Query 015277
Match_columns 410
No_of_seqs 120 out of 139
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 04:46:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015277.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015277hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04765 DUF616: Protein of un 100.0 6E-118 1E-122 874.4 28.3 304 13-326 1-305 (305)
2 cd04194 GT8_A4GalT_like A4GalT 95.0 0.038 8.2E-07 52.1 5.2 97 110-209 29-131 (248)
3 cd00505 Glyco_transf_8 Members 92.8 0.62 1.3E-05 44.3 8.8 160 110-301 29-200 (246)
4 PF01501 Glyco_transf_8: Glyco 90.5 0.41 8.9E-06 43.6 4.7 116 158-301 85-205 (250)
5 PF03407 Nucleotid_trans: Nucl 69.2 12 0.00025 34.5 5.8 90 171-302 66-156 (212)
6 cd06429 GT8_like_1 GT8_like_1 68.1 7.8 0.00017 38.2 4.6 96 110-208 28-148 (257)
7 cd06432 GT8_HUGT1_C_like The C 56.8 10 0.00022 36.9 3.1 96 110-208 29-130 (248)
8 PF03452 Anp1: Anp1; InterPro 52.0 12 0.00026 37.6 2.8 47 162-211 133-179 (269)
9 PLN03181 glycosyltransferase; 48.5 20 0.00043 38.6 3.8 121 153-317 176-322 (453)
10 PF05637 Glyco_transf_34: gala 47.5 14 0.00029 36.0 2.3 44 256-300 143-192 (239)
11 cd02537 GT8_Glycogenin Glycoge 45.1 1E+02 0.0022 29.4 7.9 53 141-194 53-112 (240)
12 PLN02742 Probable galacturonos 44.9 28 0.00061 38.3 4.4 94 110-206 255-385 (534)
13 cd06430 GT8_like_2 GT8_like_2 44.8 46 0.001 34.0 5.7 34 162-195 87-120 (304)
14 PLN02718 Probable galacturonos 43.8 54 0.0012 36.6 6.4 96 110-208 341-452 (603)
15 cd06431 GT8_LARGE_C LARGE cata 39.7 26 0.00057 34.8 3.0 99 109-208 28-135 (280)
16 KOG1924 RhoA GTPase effector D 37.2 49 0.0011 38.3 4.9 15 28-42 65-79 (1102)
17 PF03314 DUF273: Protein of un 34.9 32 0.00069 33.9 2.7 41 165-207 35-75 (222)
18 PF00906 Hepatitis_core: Hepat 33.7 24 0.00051 33.7 1.5 19 380-398 160-178 (187)
19 KOG2675 Adenylate cyclase-asso 28.3 66 0.0014 34.8 3.9 13 318-330 200-212 (480)
20 cd02515 Glyco_transf_6 Glycosy 24.4 54 0.0012 33.2 2.3 113 68-189 19-141 (271)
21 PLN02769 Probable galacturonos 23.2 1.5E+02 0.0033 33.4 5.6 49 157-207 431-485 (629)
22 PF06588 Muskelin_N: Muskelin 22.7 2.6E+02 0.0056 27.4 6.4 97 85-192 55-154 (199)
23 KOG0126 Predicted RNA-binding 22.5 80 0.0017 30.9 2.9 78 11-122 7-89 (219)
24 KOG0400 40S ribosomal protein 22.1 86 0.0019 29.0 2.9 50 201-269 9-58 (151)
No 1
>PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function. The function of is unknown although a number of the members are thought to be glycosyltransferases.
Probab=100.00 E-value=5.8e-118 Score=874.36 Aligned_cols=304 Identities=59% Similarity=1.005 Sum_probs=297.3
Q ss_pred ceeeeecCCcccccCCCCCCCCCCCChhhccccccCCCCeeeecccccCCCCCCCCccCChhhHHHHhccCcEEEEEeee
Q 015277 13 NLTYITEPVLNREAEFGGSDFGGYPPLAQRNNSYDIRESMSVHCGFVKGKPGRGTGYDLDEEDILDMEQCHGIVVVSAIF 92 (410)
Q Consensus 13 ~l~y~~~~~~~~~~~~~~~~FgG~~s~~~r~~sf~~~~~~~vhCgf~~g~~~~~~gf~i~e~d~~~m~~c~kvVVyTAIF 92 (410)
||+||.+|+.+. +.++++|||||||+||++||+++++|+|||||++ ||||||+|.|+.||++|+ ||||||||
T Consensus 1 nl~y~~~~~~~~--~~~~~~f~g~~s~~~R~~sf~~~~~~~v~Cgf~~-----~~gf~i~~~d~~~m~~c~-vvV~saIF 72 (305)
T PF04765_consen 1 NLTYIEEENKPE--SGRGPSFGGNQSLEERESSFDIQEDMTVHCGFVK-----NTGFDISESDRRYMEKCR-VVVYSAIF 72 (305)
T ss_pred CCcccccccccc--cCCCCCcCCcCCHHHHHHhcCCCCCceecccccc-----CCCCCCCHHHHHHHhcCC-EEEEEEec
Confidence 899999998766 8899999999999999999999999999999999 799999999999999999 99999999
Q ss_pred CCCcccCCCCCCCccCCCCeeEEEEechhhHHHHhhccCC-CCCCcccceEEEEcCCCCCCCccccCCcceeecccCCCC
Q 015277 93 GAFDDINQPSNISEYSRKTVCFVMFVDEETEAYLKANSGL-DRTKKIGIWRIVVIHNPPYSDARRTGKIPKLLAHRLFPN 171 (410)
Q Consensus 93 G~YD~L~~P~~is~~s~~~VcFi~FtD~~tl~~l~~~~~~-~~~~~~g~WrIV~V~~lpy~D~rrngRipKiLpHrLFPn 171 (410)
|+||+|+||.+||+++.++|||+||||+.|+++|++++.+ ++++++|+||||+|+++||+|+|||||+||||||+||||
T Consensus 73 G~yD~l~qP~~i~~~s~~~vcf~mF~D~~t~~~l~~~~~~~~~~~~ig~WrIv~v~~lp~~d~rr~~r~~K~lpHrlfp~ 152 (305)
T PF04765_consen 73 GNYDKLRQPKNISEYSKKNVCFFMFVDEETLKSLESEGHIPDENKKIGIWRIVVVKNLPYDDPRRNGRIPKLLPHRLFPN 152 (305)
T ss_pred CCCccccCchhhCHHHhcCccEEEEEehhhHHHHHhcCCccccccccCceEEEEecCCCCcchhhcCcccceeccccCCC
Confidence 9999999999999999999999999999999999998865 888999999999999999999999999999999999999
Q ss_pred CCEEEEEeCceEEeeCHHHHHHHHhhccCCcEEEecCCCCCCHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCcccCC
Q 015277 172 ARFSLWIDGKLELVVDPYQILERHLWRKNATFAISRHYKRFDVLVEAEANKAAKKYDNASIDFQIEFYKNEGLTPYSEAK 251 (410)
Q Consensus 172 y~ySIWIDgki~L~~DP~~lLe~~L~r~~~~~Ais~Hp~R~cvYEEA~a~~~~~K~~~~~I~~Qm~~Yk~eGlp~~~~~k 251 (410)
|+|||||||||+|++||++||+++||+++++|||++||.|+||||||+||++++||+.+.|++||++|+++|||+|+.+|
T Consensus 153 y~ySIWID~ki~L~~Dp~~lie~~l~~~~~~~Ai~~H~~R~cvyeEa~a~~~~~k~~~~~I~~Qm~~Y~~eGlp~~s~~k 232 (305)
T PF04765_consen 153 YDYSIWIDGKIQLIVDPLLLIERFLWRKNADIAISKHPERNCVYEEAEACKRLGKYDPERIDEQMEFYKQEGLPPWSPAK 232 (305)
T ss_pred CceEEEEeeeEEEecCHHHHHHHHHhcCCCcEEEeCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcceEEEcccCCchhHHHHHHHHHHhcCCCCCCchHHHHHhHhccCCCccccccccchhhhhhhhccc
Q 015277 252 LPITSDVPEGCVIIREHVPISNLFVCLWFNEVDRFTSRDQISFSTVRDKLWAKTNWTVNMFLDCERRNFVVQKYH 326 (410)
Q Consensus 252 ~P~~sgL~E~~vIiR~H~~~snlfmclWfnEv~rfs~RDQLSF~Yvl~Kl~~~~~~~~nMF~dcer~~~v~~~~h 326 (410)
+|+.+|||||+||||+|++++|+|||+|||||++||+||||||+||+||++. +|++|||+||||+++|++++|
T Consensus 233 ~~l~s~v~E~~iIiR~H~~~~nlf~clWfnEv~rfs~RDQLSF~Yv~wk~~~--~~~~~mf~~~~~~~~~~~~~h 305 (305)
T PF04765_consen 233 LPLPSDVPEGNIIIRKHNPMSNLFMCLWFNEVERFSPRDQLSFPYVLWKLGP--KFKLNMFKDCERRQLVVLYRH 305 (305)
T ss_pred cccccCCccceEEEecCCchhHHHHHHHHHHHhcCCCcccchHHHHHHHhCC--cccchhhhHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999996 699999999999999999998
No 2
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=95.00 E-value=0.038 Score=52.10 Aligned_cols=97 Identities=19% Similarity=0.219 Sum_probs=59.6
Q ss_pred CCeeEEEEechhhHHHHhhccCCCCCCcccceEEEEcCCCCCCCcc-ccCC-----cceeecccCCCCCCEEEEEeCceE
Q 015277 110 KTVCFVMFVDEETEAYLKANSGLDRTKKIGIWRIVVIHNPPYSDAR-RTGK-----IPKLLAHRLFPNARFSLWIDGKLE 183 (410)
Q Consensus 110 ~~VcFi~FtD~~tl~~l~~~~~~~~~~~~g~WrIV~V~~lpy~D~r-rngR-----ipKiLpHrLFPny~ySIWIDgki~ 183 (410)
..++|++++|+.+......-..+.... ...-+++.++...+.+.. ...+ +.|++...+||+|+.-||||+-+.
T Consensus 29 ~~~~~~il~~~is~~~~~~L~~~~~~~-~~~i~~~~i~~~~~~~~~~~~~~~~~~~y~rl~l~~ll~~~~rvlylD~D~l 107 (248)
T cd04194 29 RDYDFYILNDDISEENKKKLKELLKKY-NSSIEFIKIDNDDFKFFPATTDHISYATYYRLLIPDLLPDYDKVLYLDADII 107 (248)
T ss_pred CceEEEEEeCCCCHHHHHHHHHHHHhc-CCeEEEEEcCHHHHhcCCcccccccHHHHHHHHHHHHhcccCEEEEEeCCEE
Confidence 478999999875543322111110000 122344544332121111 1222 347889999999999999999999
Q ss_pred EeeCHHHHHHHHhhccCCcEEEecCC
Q 015277 184 LVVDPYQILERHLWRKNATFAISRHY 209 (410)
Q Consensus 184 L~~DP~~lLe~~L~r~~~~~Ais~Hp 209 (410)
+.+|+..|.+.-+ ++..+|+..|.
T Consensus 108 v~~di~~L~~~~~--~~~~~aa~~d~ 131 (248)
T cd04194 108 VLGDLSELFDIDL--GDNLLAAVRDP 131 (248)
T ss_pred ecCCHHHHhcCCc--CCCEEEEEecc
Confidence 9999999987544 46778887764
No 3
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=92.84 E-value=0.62 Score=44.26 Aligned_cols=160 Identities=13% Similarity=0.181 Sum_probs=93.1
Q ss_pred CCeeEEEEechhhHHHHhhccCCCCCCcccceEEEEcCCCCCC------CccccCCcceeecccCCCCCCEEEEEeCceE
Q 015277 110 KTVCFVMFVDEETEAYLKANSGLDRTKKIGIWRIVVIHNPPYS------DARRTGKIPKLLAHRLFPNARFSLWIDGKLE 183 (410)
Q Consensus 110 ~~VcFi~FtD~~tl~~l~~~~~~~~~~~~g~WrIV~V~~lpy~------D~rrngRipKiLpHrLFPny~ySIWIDgki~ 183 (410)
+.+.|+.++|..+....+.-..+... .....+++.++...+. ......-+.|++...|||+++--||+|+-+.
T Consensus 29 ~~~~~~il~~~is~~~~~~L~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~y~RL~i~~llp~~~kvlYLD~D~i 107 (246)
T cd00505 29 KPLRFHVLTNPLSDTFKAALDNLRKL-YNFNYELIPVDILDSVDSEHLKRPIKIVTLTKLHLPNLVPDYDKILYVDADIL 107 (246)
T ss_pred CCeEEEEEEccccHHHHHHHHHHHhc-cCceEEEEeccccCcchhhhhcCccccceeHHHHHHHHhhccCeEEEEcCCee
Confidence 47889999988655322211111000 0123445555432221 2223445789999999999999999999999
Q ss_pred EeeCHHHHHHHHhhccCCcEEEecCCCCCCHHHHHHHHHHhccCChHHHHHHHHHH-HHCCCCCcccCCCCCCCCCCcce
Q 015277 184 LVVDPYQILERHLWRKNATFAISRHYKRFDVLVEAEANKAAKKYDNASIDFQIEFY-KNEGLTPYSEAKLPITSDVPEGC 262 (410)
Q Consensus 184 L~~DP~~lLe~~L~r~~~~~Ais~Hp~R~cvYEEA~a~~~~~K~~~~~I~~Qm~~Y-k~eGlp~~~~~k~P~~sgL~E~~ 262 (410)
+..|+..|.+--+ ++..+|+..-.. .. ... +.| +..|++. ....+-++
T Consensus 108 v~~di~~L~~~~l--~~~~~aav~d~~----~~------~~~-----------~~~~~~~~~~~--------~~~yfNsG 156 (246)
T cd00505 108 VLTDIDELWDTPL--GGQELAAAPDPG----DR------REG-----------KYYRQKRSHLA--------GPDYFNSG 156 (246)
T ss_pred eccCHHHHhhccC--CCCeEEEccCch----hh------hcc-----------chhhcccCCCC--------CCCceeee
Confidence 9999999998666 466788864321 00 000 111 1223321 22345567
Q ss_pred EEEcccCC-----chhHHHHHHHHHHhcCCCCCCchHHHHHhHh
Q 015277 263 VIIREHVP-----ISNLFVCLWFNEVDRFTSRDQISFSTVRDKL 301 (410)
Q Consensus 263 vIiR~H~~-----~snlfmclWfnEv~rfs~RDQLSF~Yvl~Kl 301 (410)
|++=+-.. +.......|.+...+..--||=.++.++...
T Consensus 157 Vmlinl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~~~~~ 200 (246)
T cd00505 157 VFVVNLSKERRNQLLKVALEKWLQSLSSLSGGDQDLLNTFFKQV 200 (246)
T ss_pred eEEEechHHHHHHHHHHHHHHHHhhcccCccCCcHHHHHHHhcC
Confidence 77732221 2222234455555678889999999998875
No 4
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=90.52 E-value=0.41 Score=43.62 Aligned_cols=116 Identities=15% Similarity=0.152 Sum_probs=65.9
Q ss_pred CCcceeecccCCCCCCEEEEEeCceEEeeCHHHHHHHHhhccCCcEEEecCCCCCCHHHHHHHHHHhccCChHHHHHHHH
Q 015277 158 GKIPKLLAHRLFPNARFSLWIDGKLELVVDPYQILERHLWRKNATFAISRHYKRFDVLVEAEANKAAKKYDNASIDFQIE 237 (410)
Q Consensus 158 gRipKiLpHrLFPny~ySIWIDgki~L~~DP~~lLe~~L~r~~~~~Ais~Hp~R~cvYEEA~a~~~~~K~~~~~I~~Qm~ 237 (410)
.-+.|++.+.+|++|+--||+|+-+.+.+|+..|.+.-+ ++..+|+... ....
T Consensus 85 ~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~--~~~~~~a~~~-------------------------~~~~ 137 (250)
T PF01501_consen 85 ATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDL--QGKYLAAVED-------------------------ESFD 137 (250)
T ss_dssp GGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC-----TTSSEEEEE-----------------------------H
T ss_pred HHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccc--hhhhcccccc-------------------------chhh
Confidence 344689999999999999999999999999999998666 3666777666 0001
Q ss_pred HHHHCCCCCcccCCCCCCCCCCcceEEEcccCCch-hHHHHHHHHHHhc----CCCCCCchHHHHHhHh
Q 015277 238 FYKNEGLTPYSEAKLPITSDVPEGCVIIREHVPIS-NLFVCLWFNEVDR----FTSRDQISFSTVRDKL 301 (410)
Q Consensus 238 ~Yk~eGlp~~~~~k~P~~sgL~E~~vIiR~H~~~s-nlfmclWfnEv~r----fs~RDQLSF~Yvl~Kl 301 (410)
.+ ..+-...+....+...+.+-++|++=+-.... +.+...+.+.++. ..--||=-|++++...
T Consensus 138 ~~-~~~~~~~~~~~~~~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DQ~~ln~~~~~~ 205 (250)
T PF01501_consen 138 NF-PNKRFPFSERKQPGNKPYFNSGVMLFNPSKWRKENILQKLIEWLEQNGMKLGFPDQDILNIVFYGN 205 (250)
T ss_dssp HH-HTSTTSSEEECESTTTTSEEEEEEEEEHHHHHHHHHHHHHHHHHHHTTTT-SSCHHHHHHHHHTTG
T ss_pred hh-hhcccchhhcccCcccccccCcEEEEeechhhhhhhhhhhhhhhhhcccccCcCchHHHhhhccce
Confidence 01 11111122223344566777887774322211 1122322222222 4558999999998844
No 5
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=69.21 E-value=12 Score=34.49 Aligned_cols=90 Identities=14% Similarity=0.158 Sum_probs=62.6
Q ss_pred CCCEEEEEeCceEEeeCHHHHHHHHhhccCCcEEEecCCCCCCHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCcccC
Q 015277 171 NARFSLWIDGKLELVVDPYQILERHLWRKNATFAISRHYKRFDVLVEAEANKAAKKYDNASIDFQIEFYKNEGLTPYSEA 250 (410)
Q Consensus 171 ny~ySIWIDgki~L~~DP~~lLe~~L~r~~~~~Ais~Hp~R~cvYEEA~a~~~~~K~~~~~I~~Qm~~Yk~eGlp~~~~~ 250 (410)
+|+ -+++|+=+.+..||..+++ ..+.++.++.-..... . .+.
T Consensus 66 G~~-vl~~D~Dvv~~~dp~~~~~----~~~~Di~~~~d~~~~~-----------------~------~~~---------- 107 (212)
T PF03407_consen 66 GYD-VLFSDADVVWLRDPLPYFE----NPDADILFSSDGWDGT-----------------N------SDR---------- 107 (212)
T ss_pred CCc-eEEecCCEEEecCcHHhhc----cCCCceEEecCCCccc-----------------c------hhh----------
Confidence 444 5689999999999999982 1467787765221000 0 000
Q ss_pred CCCCCCCCCcceEEEcccCCchhHHHHHHHHHHhcCCC-CCCchHHHHHhHhc
Q 015277 251 KLPITSDVPEGCVIIREHVPISNLFVCLWFNEVDRFTS-RDQISFSTVRDKLW 302 (410)
Q Consensus 251 k~P~~sgL~E~~vIiR~H~~~snlfmclWfnEv~rfs~-RDQLSF~Yvl~Kl~ 302 (410)
..+.+-+++++=+.++.+..|+..|-......+. .||-.|..++....
T Consensus 108 ----~~~~~n~G~~~~r~t~~~~~~~~~w~~~~~~~~~~~DQ~~~n~~l~~~~ 156 (212)
T PF03407_consen 108 ----NGNLVNTGFYYFRPTPRTIAFLEDWLERMAESPGCWDQQAFNELLREQA 156 (212)
T ss_pred ----cCCccccceEEEecCHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhcc
Confidence 1112235666666689999999999999999955 79999999999865
No 6
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=68.10 E-value=7.8 Score=38.16 Aligned_cols=96 Identities=14% Similarity=0.265 Sum_probs=61.1
Q ss_pred CCeeEEEEechhhHHHHhhccCCCCCCcccceEEEEcCCCCCC-----Cc---------------cccC-----Ccceee
Q 015277 110 KTVCFVMFVDEETEAYLKANSGLDRTKKIGIWRIVVIHNPPYS-----DA---------------RRTG-----KIPKLL 164 (410)
Q Consensus 110 ~~VcFi~FtD~~tl~~l~~~~~~~~~~~~g~WrIV~V~~lpy~-----D~---------------rrng-----RipKiL 164 (410)
.+++|..|||..+...++.--... ....-..+++.+++..+. ++ .+.. -+.+++
T Consensus 28 ~~~~fhvvtd~~s~~~~~~~~~~~-~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ 106 (257)
T cd06429 28 SNLVFHIVTDNQNYGAMRSWFDLN-PLKIATVKVLNFDDFKLLGKVKVDSLMQLESEADTSNLKQRKPEYISLLNFARFY 106 (257)
T ss_pred CceEEEEecCccCHHHHHHHHHhc-CCCCceEEEEEeCcHHhhcccccchhhhhhccccccccccCCccccCHHHHHHHH
Confidence 578999999988866554321111 011234666666432221 01 0111 134666
Q ss_pred cccCCCCCCEEEEEeCceEEeeCHHHHHHHHhhccCCcEEEecC
Q 015277 165 AHRLFPNARFSLWIDGKLELVVDPYQILERHLWRKNATFAISRH 208 (410)
Q Consensus 165 pHrLFPny~ySIWIDgki~L~~DP~~lLe~~L~r~~~~~Ais~H 208 (410)
.-.+||+++--||+|+-+.+.+|...|.+.=+ ++..+|+...
T Consensus 107 ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl--~~~~~aav~d 148 (257)
T cd06429 107 LPELFPKLEKVIYLDDDVVVQKDLTELWNTDL--GGGVAGAVET 148 (257)
T ss_pred HHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCC--CCCEEEEEhh
Confidence 67889999999999999999999999998655 4566766544
No 7
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=56.82 E-value=10 Score=36.93 Aligned_cols=96 Identities=14% Similarity=0.167 Sum_probs=56.0
Q ss_pred CCeeEEEEechhhHHHHhhccCCCCCCcccceEEEEcCC-CCCCCccccCC----cceeecccCCC-CCCEEEEEeCceE
Q 015277 110 KTVCFVMFVDEETEAYLKANSGLDRTKKIGIWRIVVIHN-PPYSDARRTGK----IPKLLAHRLFP-NARFSLWIDGKLE 183 (410)
Q Consensus 110 ~~VcFi~FtD~~tl~~l~~~~~~~~~~~~g~WrIV~V~~-lpy~D~rrngR----ipKiLpHrLFP-ny~ySIWIDgki~ 183 (410)
..+.|++++|..+.+.++.-..+.+.. ...=.++.++. ..+.......+ +..+++..+|| +++--||+|+-+.
T Consensus 29 ~~~~fyil~~~is~e~~~~l~~~~~~~-~~~i~~i~i~~~~~~~~~~~~~~~~~~y~rL~~~~lLP~~vdkvLYLD~Dil 107 (248)
T cd06432 29 SPVKFWFIKNFLSPQFKEFLPEMAKEY-GFEYELVTYKWPRWLHKQTEKQRIIWGYKILFLDVLFPLNVDKVIFVDADQI 107 (248)
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHHh-CCceEEEEecChhhhhcccccchhHHHHHHHHHHHhhhhccCEEEEEcCCce
Confidence 468999999977744332211110000 01113344431 11111111111 22366777899 6999999999999
Q ss_pred EeeCHHHHHHHHhhccCCcEEEecC
Q 015277 184 LVVDPYQILERHLWRKNATFAISRH 208 (410)
Q Consensus 184 L~~DP~~lLe~~L~r~~~~~Ais~H 208 (410)
+.+|...|.+-=+ ++.-+|+..|
T Consensus 108 v~~dL~eL~~~dl--~~~~~Aav~d 130 (248)
T cd06432 108 VRTDLKELMDMDL--KGAPYGYTPF 130 (248)
T ss_pred ecccHHHHHhcCc--CCCeEEEeec
Confidence 9999999887655 4677888765
No 8
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=52.04 E-value=12 Score=37.63 Aligned_cols=47 Identities=19% Similarity=0.430 Sum_probs=37.6
Q ss_pred eeecccCCCCCCEEEEEeCceEEeeCHHHHHHHHhhccCCcEEEecCCCC
Q 015277 162 KLLAHRLFPNARFSLWIDGKLELVVDPYQILERHLWRKNATFAISRHYKR 211 (410)
Q Consensus 162 KiLpHrLFPny~ySIWIDgki~L~~DP~~lLe~~L~r~~~~~Ais~Hp~R 211 (410)
-+|.|-|=|..++.+|+|+-|. .-|-.||+.++. .+.+|-+++=..+
T Consensus 133 ~LL~~aL~p~~swVlWlDaDIv--~~P~~lI~dli~-~~kdIivPn~~~~ 179 (269)
T PF03452_consen 133 FLLSSALGPWHSWVLWLDADIV--ETPPTLIQDLIA-HDKDIIVPNCWRR 179 (269)
T ss_pred HHHHhhcCCcccEEEEEecCcc--cCChHHHHHHHh-CCCCEEccceeec
Confidence 3567777789999999999887 889999999995 5778877554333
No 9
>PLN03181 glycosyltransferase; Provisional
Probab=48.54 E-value=20 Score=38.55 Aligned_cols=121 Identities=19% Similarity=0.209 Sum_probs=75.4
Q ss_pred CccccCCcceeecc----cCCCCCCEEEEEeCceEEeeCHH--HHHHHHhhccCCcEEEecCCCCCCHHHHHHHHHHhcc
Q 015277 153 DARRTGKIPKLLAH----RLFPNARFSLWIDGKLELVVDPY--QILERHLWRKNATFAISRHYKRFDVLVEAEANKAAKK 226 (410)
Q Consensus 153 D~rrngRipKiLpH----rLFPny~ySIWIDgki~L~~DP~--~lLe~~L~r~~~~~Ais~Hp~R~cvYEEA~a~~~~~K 226 (410)
++.+.+.|-|+..- .-||++++-.|+|...-|+ ||. +=+++|. +.. +..|..=.-+|++
T Consensus 176 d~~~p~~WaKipalRaAM~a~PeAEWfWWLDsDALIM-Np~~sLPl~ry~---~~N--Lvvhg~p~~vy~~--------- 240 (453)
T PLN03181 176 HPKMNSYWAKLPVVRAAMLAHPEAEWIWWVDSDAVFT-DMDFKLPLHRYR---DHN--LVVHGWPKLIYEK--------- 240 (453)
T ss_pred CccCchhhhHHHHHHHHHHHCCCceEEEEecCCceee-cCCCCCCHhhcC---Ccc--ccccCCccccccc---------
Confidence 44455556665332 3399999999999999886 331 1133332 111 2233221112211
Q ss_pred CChHHHHHHHHHHHHCCCCCcccCCCCCCCCCCcceEEEcccCCchhHHHHHHHH------------HHh--------cC
Q 015277 227 YDNASIDFQIEFYKNEGLTPYSEAKLPITSDVPEGCVIIREHVPISNLFVCLWFN------------EVD--------RF 286 (410)
Q Consensus 227 ~~~~~I~~Qm~~Yk~eGlp~~~~~k~P~~sgL~E~~vIiR~H~~~snlfmclWfn------------Ev~--------rf 286 (410)
.. ..|+--|.++||+| +-+-.|+..||. ++. -|
T Consensus 241 ------------------qd--------w~GlN~GsFLIRNc-qWSl~LLDaWa~Mgp~~p~~~~~G~~l~~~l~~r~~~ 293 (453)
T PLN03181 241 ------------------RS--------WTALNAGVFLIRNC-QWSLDFMDAWASMGPASPEYAKWGKILRSTFKDKLFP 293 (453)
T ss_pred ------------------cc--------ccccceeeeEEecC-HHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCCCCC
Confidence 11 46777789999986 666668999987 221 14
Q ss_pred CCCCCchHHHHHhHhccCCCccccccccchh
Q 015277 287 TSRDQISFSTVRDKLWAKTNWTVNMFLDCER 317 (410)
Q Consensus 287 s~RDQLSF~Yvl~Kl~~~~~~~~nMF~dcer 317 (410)
-+=||=++-|.+-+.+. +|.-..|...++
T Consensus 294 eaDDQsaLvyll~~~~~--~w~~k~ylE~~y 322 (453)
T PLN03181 294 ESDDQSALVYLLYKHKE--KWGDKIYLEGEY 322 (453)
T ss_pred CccchHHHHHHHHhccc--hhccceeeecce
Confidence 45799999999998775 388888777664
No 10
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=47.51 E-value=14 Score=35.96 Aligned_cols=44 Identities=20% Similarity=0.322 Sum_probs=0.0
Q ss_pred CCCCcceEEEcccCCchhHHHHHHHHHHhcCC------CCCCchHHHHHhH
Q 015277 256 SDVPEGCVIIREHVPISNLFVCLWFNEVDRFT------SRDQISFSTVRDK 300 (410)
Q Consensus 256 sgL~E~~vIiR~H~~~snlfmclWfnEv~rfs------~RDQLSF~Yvl~K 300 (410)
.||--|.+|||.+ +-+..|.+.|+...-+.. ..||=+|.|.+..
T Consensus 143 ~gLNtGsFliRns-~ws~~fLd~w~~~~~~~~~~~~~~~~EQsAl~~ll~~ 192 (239)
T PF05637_consen 143 NGLNTGSFLIRNS-PWSRDFLDAWADPLYRNYDWDQLEFDEQSALEHLLQW 192 (239)
T ss_dssp ---------------------------------------------------
T ss_pred ccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence 5666678899985 555567899996554332 2456666666543
No 11
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=45.08 E-value=1e+02 Score=29.44 Aligned_cols=53 Identities=11% Similarity=0.162 Sum_probs=38.7
Q ss_pred eEEEEcCCCCCC-------CccccCCcceeecccCCCCCCEEEEEeCceEEeeCHHHHHHH
Q 015277 141 WRIVVIHNPPYS-------DARRTGKIPKLLAHRLFPNARFSLWIDGKLELVVDPYQILER 194 (410)
Q Consensus 141 WrIV~V~~lpy~-------D~rrngRipKiLpHrLFPny~ySIWIDgki~L~~DP~~lLe~ 194 (410)
++++.|+.+... +.+-.+-+.|+..-.+ .+|+--||||+-+.+..|+..|.+.
T Consensus 53 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~kl~~~~l-~~~drvlylD~D~~v~~~i~~Lf~~ 112 (240)
T cd02537 53 WIVREVEPIDPPDSANLLKRPRFKDTYTKLRLWNL-TEYDKVVFLDADTLVLRNIDELFDL 112 (240)
T ss_pred CEEEecCccCCcchhhhccchHHHHHhHHHHhccc-cccceEEEEeCCeeEccCHHHHhCC
Confidence 677776654322 2233445778777776 5799999999999999998888764
No 12
>PLN02742 Probable galacturonosyltransferase
Probab=44.85 E-value=28 Score=38.28 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=59.4
Q ss_pred CCeeEEEEechhhHHHHhhccCCCCCCcccceEEEEcCCCCCCCc--------------------------c--ccCCcc
Q 015277 110 KTVCFVMFVDEETEAYLKANSGLDRTKKIGIWRIVVIHNPPYSDA--------------------------R--RTGKIP 161 (410)
Q Consensus 110 ~~VcFi~FtD~~tl~~l~~~~~~~~~~~~g~WrIV~V~~lpy~D~--------------------------r--rngRip 161 (410)
.++-|..+||..+...++.==. ....+.-.|.|..+++..+... . ...|-|
T Consensus 255 ~~~VFHiVTD~~n~~aM~~WF~-~n~~~~a~v~V~n~e~f~wl~~~~~pvl~ql~~~~~~~~yf~~~~~~~~~~~k~r~p 333 (534)
T PLN02742 255 DQLVFHLVTDEVNYGAMQAWFA-MNDFKGVTVEVQKIEEFSWLNASYVPVLKQLQDSDTQSYYFSGSQDDGKTEIKFRNP 333 (534)
T ss_pred CcEEEEEeechhhHHHHHHHHh-hCCCCccEEEEEEeccccccccccchHHHHhhhhhhhhhhcccccccccccccccCc
Confidence 4588999999999877653100 1122235677777665322110 0 011213
Q ss_pred ee---------ecccCCCCCCEEEEEeCceEEeeCHHHHHHHHhhccCCcEEEe
Q 015277 162 KL---------LAHRLFPNARFSLWIDGKLELVVDPYQILERHLWRKNATFAIS 206 (410)
Q Consensus 162 Ki---------LpHrLFPny~ySIWIDgki~L~~DP~~lLe~~L~r~~~~~Ais 206 (410)
|+ +.-++||+.+--||+|+-+.+.+|+..|.+-=| ++.-+|+.
T Consensus 334 ~y~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~~~DL--~~~viaAV 385 (534)
T PLN02742 334 KYLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLFSIDL--HGNVNGAV 385 (534)
T ss_pred ccccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHhcCCC--CCCEEEEe
Confidence 33 233689999999999999999999999987545 35666665
No 13
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=44.77 E-value=46 Score=34.02 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=30.8
Q ss_pred eeecccCCCCCCEEEEEeCceEEeeCHHHHHHHH
Q 015277 162 KLLAHRLFPNARFSLWIDGKLELVVDPYQILERH 195 (410)
Q Consensus 162 KiLpHrLFPny~ySIWIDgki~L~~DP~~lLe~~ 195 (410)
.++...+||+.+--||+|+-+.+.+|+..|.+-|
T Consensus 87 RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~~~ 120 (304)
T cd06430 87 RLFLPSLLPDVDSLLYVDTDILFLRPVEEIWSFL 120 (304)
T ss_pred HHHHHHHhhhhceEEEeccceeecCCHHHHHHHH
Confidence 3788899999999999999999999999999863
No 14
>PLN02718 Probable galacturonosyltransferase
Probab=43.82 E-value=54 Score=36.63 Aligned_cols=96 Identities=13% Similarity=0.179 Sum_probs=60.7
Q ss_pred CCeeEEEEechhhHHHHhhccCCCCCCcccceEEEEcCCC---C--CCC-----ccccCC------cceeecccCCCCCC
Q 015277 110 KTVCFVMFVDEETEAYLKANSGLDRTKKIGIWRIVVIHNP---P--YSD-----ARRTGK------IPKLLAHRLFPNAR 173 (410)
Q Consensus 110 ~~VcFi~FtD~~tl~~l~~~~~~~~~~~~g~WrIV~V~~l---p--y~D-----~rrngR------ipKiLpHrLFPny~ 173 (410)
.++.|..|||..+...++.--.+.. .....+.|+.+++. | |.+ +..+.+ +.+++.-.+||+++
T Consensus 341 ~~ivFHVvTD~is~~~mk~wf~l~~-~~~a~I~V~~Iddf~~lp~~~~~~lk~l~s~~~~~~S~~~y~Rl~ipellp~l~ 419 (603)
T PLN02718 341 EKIVFHVVTDSLNYPAISMWFLLNP-PGKATIQILNIDDMNVLPADYNSLLMKQNSHDPRYISALNHARFYLPDIFPGLN 419 (603)
T ss_pred CcEEEEEEeCCCCHHHHHHHHHhCC-CCCcEEEEEecchhccccccchhhhhhccccccccccHHHHHHHHHHHHhcccC
Confidence 3689999999988776652111111 11346677766532 1 111 001112 23556667899999
Q ss_pred EEEEEeCceEEeeCHHHHHHHHhhccCCcEEEecC
Q 015277 174 FSLWIDGKLELVVDPYQILERHLWRKNATFAISRH 208 (410)
Q Consensus 174 ySIWIDgki~L~~DP~~lLe~~L~r~~~~~Ais~H 208 (410)
--||+|+-+.+.+|+..|.+-=+ ++..+|+...
T Consensus 420 KvLYLD~DvVV~~DL~eL~~iDl--~~~v~aaVed 452 (603)
T PLN02718 420 KIVLFDHDVVVQRDLSRLWSLDM--KGKVVGAVET 452 (603)
T ss_pred EEEEEECCEEecCCHHHHhcCCC--CCcEEEEecc
Confidence 99999999999999999987545 3556666643
No 15
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=39.72 E-value=26 Score=34.84 Aligned_cols=99 Identities=11% Similarity=0.103 Sum_probs=59.9
Q ss_pred CCCeeEEEEechhhHHHHhhccCCCCCCcccceEEEEcCCC--CC---CCccccCCc--ceeecccCCC-CCCEEEEEeC
Q 015277 109 RKTVCFVMFVDEETEAYLKANSGLDRTKKIGIWRIVVIHNP--PY---SDARRTGKI--PKLLAHRLFP-NARFSLWIDG 180 (410)
Q Consensus 109 ~~~VcFi~FtD~~tl~~l~~~~~~~~~~~~g~WrIV~V~~l--py---~D~rrngRi--pKiLpHrLFP-ny~ySIWIDg 180 (410)
...++|..|+|+.....++.-...-+ .....+.++.+++. .+ ....-.+.+ .+++.+.+|| +++--||+|+
T Consensus 28 ~~~~~fhii~d~~s~~~~~~l~~~~~-~~~~~i~f~~i~~~~~~~~~~~~~~~s~~y~y~RL~ip~llp~~~dkvLYLD~ 106 (280)
T cd06431 28 RNPLHFHLITDEIARRILATLFQTWM-VPAVEVSFYNAEELKSRVSWIPNKHYSGIYGLMKLVLTEALPSDLEKVIVLDT 106 (280)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHhcc-ccCcEEEEEEhHHhhhhhccCcccchhhHHHHHHHHHHHhchhhcCEEEEEcC
Confidence 35689999999876554332111100 11234555555321 11 111122222 4888999999 7999999999
Q ss_pred ceEEeeCHHHHHHHHh-hccCCcEEEecC
Q 015277 181 KLELVVDPYQILERHL-WRKNATFAISRH 208 (410)
Q Consensus 181 ki~L~~DP~~lLe~~L-~r~~~~~Ais~H 208 (410)
=+.+.+|+.+|.+-+. ..++.-+|+..+
T Consensus 107 Diiv~~di~eL~~~~~~~~~~~~~a~v~~ 135 (280)
T cd06431 107 DITFATDIAELWKIFHKFTGQQVLGLVEN 135 (280)
T ss_pred CEEEcCCHHHHHHHhhhcCCCcEEEEecc
Confidence 9999999999998741 123445666654
No 16
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=37.16 E-value=49 Score=38.33 Aligned_cols=15 Identities=13% Similarity=0.109 Sum_probs=9.2
Q ss_pred CCCCCCCCCCChhhc
Q 015277 28 FGGSDFGGYPPLAQR 42 (410)
Q Consensus 28 ~~~~~FgG~~s~~~r 42 (410)
..-+.|+|+|++++=
T Consensus 65 ~sn~d~pt~q~~q~~ 79 (1102)
T KOG1924|consen 65 ASNNDYPTAQGLQDI 79 (1102)
T ss_pred ccccCCcccccHHHH
Confidence 334567777777653
No 17
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=34.94 E-value=32 Score=33.92 Aligned_cols=41 Identities=15% Similarity=0.399 Sum_probs=34.4
Q ss_pred cccCCCCCCEEEEEeCceEEeeCHHHHHHHHhhccCCcEEEec
Q 015277 165 AHRLFPNARFSLWIDGKLELVVDPYQILERHLWRKNATFAISR 207 (410)
Q Consensus 165 pHrLFPny~ySIWIDgki~L~~DP~~lLe~~L~r~~~~~Ais~ 207 (410)
.+.++|++++-++|||-|-+ ++|...||.|+. .+.++-.+.
T Consensus 35 va~~L~~~~~vlflDaDigV-vNp~~~iEefid-~~~Di~fyd 75 (222)
T PF03314_consen 35 VAKILPEYDWVLFLDADIGV-VNPNRRIEEFID-EGYDIIFYD 75 (222)
T ss_pred HHHHhccCCEEEEEcCCcee-ecCcccHHHhcC-CCCcEEEEe
Confidence 45778999999999999876 799999999994 677777754
No 18
>PF00906 Hepatitis_core: Hepatitis core antigen; InterPro: IPR002006 This entry represent the core domain of the viral capsid (HBcAg) from various Hepatitis B virus (HBV), which is a major human pathogen. The virus is composed of an outer envelope of host-derived lipid containing the surface proteins, and an inner protein capsid that contains genomic DNA. The capsid is composed of a single polypeptide, HBcAg, also known as the core antigen. The capsid has a 5-helical fold, where two long helices form a hairpin that dimerises into a 4-helical bundle []; this fold is unusual for icosahedral viruses. The monomer fold is stabilised by a hydrophobic core that is highly conserved among human viral variants. The capsid is assembled from dimers via interactions involving a highly conserved arginine-rich region near the C terminus. This viral capsid acts as a core antigen, the major immunodominant region lying at the tips of the alpha-helical hairpins that form spikes on the capsid surface.; GO: 0005198 structural molecule activity, 0009405 pathogenesis; PDB: 1HHH_C 2QIJ_C 3KXS_F 2G34_B 2G33_C 3OX8_F 3OXS_C 3OXR_C 1QGT_B.
Probab=33.73 E-value=24 Score=33.65 Aligned_cols=19 Identities=47% Similarity=0.712 Sum_probs=0.0
Q ss_pred CCcCCCCCCCCCccccccc
Q 015277 380 TRKVSPRRGSRRSASRRHR 398 (410)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~ 398 (410)
|+++.|.+|.|||.|++-|
T Consensus 160 pR~~~P~~RRRRSqS~~Rr 178 (187)
T PF00906_consen 160 PRRRTPSPRRRRSQSRRRR 178 (187)
T ss_dssp -------------------
T ss_pred CCCCCCCCccccccCcccc
Confidence 5555566666777777433
No 19
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=28.26 E-value=66 Score=34.85 Aligned_cols=13 Identities=8% Similarity=0.230 Sum_probs=7.2
Q ss_pred hhhhhhccccccc
Q 015277 318 RNFVVQKYHRDHI 330 (410)
Q Consensus 318 ~~~v~~~~hr~~~ 330 (410)
+.+|++.|..-+.
T Consensus 200 ~~YVk~hhtTGl~ 212 (480)
T KOG2675|consen 200 QAYVKEHHTTGLV 212 (480)
T ss_pred HHHHHHhccccce
Confidence 3566666555443
No 20
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=24.42 E-value=54 Score=33.24 Aligned_cols=113 Identities=14% Similarity=0.172 Sum_probs=68.0
Q ss_pred CccCChhhHHHHhccCcEEEEEeeeCCCcccCCCC-------CCCccCCCCeeEEEEechhhHHHHhhccCCCCCCcccc
Q 015277 68 GYDLDEEDILDMEQCHGIVVVSAIFGAFDDINQPS-------NISEYSRKTVCFVMFVDEETEAYLKANSGLDRTKKIGI 140 (410)
Q Consensus 68 gf~i~e~d~~~m~~c~kvVVyTAIFG~YD~L~~P~-------~is~~s~~~VcFi~FtD~~tl~~l~~~~~~~~~~~~g~ 140 (410)
-||.+--|..|-.+.-+|.+.---+|.|-...+.= .+ ..-.|-|+.|||.... ++. -.++... .
T Consensus 19 tf~~~~l~~~y~~~n~tIgl~vfatGkY~~f~~~F~~SAEk~Fm---~g~~v~YyVFTD~~~~--~p~-v~lg~~r---~ 89 (271)
T cd02515 19 TFNPDVLDEYYRKQNITIGLTVFAVGKYTEFLERFLESAEKHFM---VGYRVIYYIFTDKPAA--VPE-VELGPGR---R 89 (271)
T ss_pred cCCHHHHHHHHHhcCCEEEEEEEEeccHHHHHHHHHHHHHHhcc---CCCeeEEEEEeCCccc--Ccc-cccCCCc---e
Confidence 47776677777777776777666678887543321 12 1257899999998753 121 0111112 2
Q ss_pred eEEEEc-CCCCCCCc--cccCCcceeecccCCCCCCEEEEEeCceEEeeCHH
Q 015277 141 WRIVVI-HNPPYSDA--RRTGKIPKLLAHRLFPNARFSLWIDGKLELVVDPY 189 (410)
Q Consensus 141 WrIV~V-~~lpy~D~--rrngRipKiLpHrLFPny~ySIWIDgki~L~~DP~ 189 (410)
=+++.| ....+.|. +|..-+-+...-+++-++||-...|+++.+..+..
T Consensus 90 ~~V~~v~~~~~W~~~sl~Rm~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~ig 141 (271)
T cd02515 90 LTVLKIAEESRWQDISMRRMKTLADHIADRIGHEVDYLFCMDVDMVFQGPFG 141 (271)
T ss_pred eEEEEeccccCCcHHHHHHHHHHHHHHHHhhcccCCEEEEeeCCceEeecCC
Confidence 234444 34555444 33323333333346889999999999999997765
No 21
>PLN02769 Probable galacturonosyltransferase
Probab=23.23 E-value=1.5e+02 Score=33.41 Aligned_cols=49 Identities=8% Similarity=0.131 Sum_probs=37.5
Q ss_pred cCCcceeecc------cCCCCCCEEEEEeCceEEeeCHHHHHHHHhhccCCcEEEec
Q 015277 157 TGKIPKLLAH------RLFPNARFSLWIDGKLELVVDPYQILERHLWRKNATFAISR 207 (410)
Q Consensus 157 ngRipKiLpH------rLFPny~ySIWIDgki~L~~DP~~lLe~~L~r~~~~~Ais~ 207 (410)
+.++..++.| .+||+.+--||+|.-+.+.+|...|.+-=| ++.-+|+..
T Consensus 431 ~~eyiS~~nh~RfyIPELLP~LdKVLYLD~DVVVqgDLseLw~iDL--~gkviAAVe 485 (629)
T PLN02769 431 RTEYLSVFSHSHFLLPEIFKKLKKVVVLDDDVVVQRDLSFLWNLDM--GGKVNGAVQ 485 (629)
T ss_pred CcccccHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhcCCC--CCCeEEEeh
Confidence 4455555555 689999999999999999999999987545 455677753
No 22
>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1 [].
Probab=22.71 E-value=2.6e+02 Score=27.36 Aligned_cols=97 Identities=23% Similarity=0.321 Sum_probs=52.3
Q ss_pred EEEEEeeeCCCcccCCCCCCCccCCCCeeEEEEechhhHHHHhhccCCCCCCcccceEEEEcCCCCCCCccccCCcceee
Q 015277 85 IVVVSAIFGAFDDINQPSNISEYSRKTVCFVMFVDEETEAYLKANSGLDRTKKIGIWRIVVIHNPPYSDARRTGKIPKLL 164 (410)
Q Consensus 85 vVVyTAIFG~YD~L~~P~~is~~s~~~VcFi~FtD~~tl~~l~~~~~~~~~~~~g~WrIV~V~~lpy~D~rrngRipKiL 164 (410)
.||-|.+||-|-+.+ +-++ +.+--+-=.|++...-|- ++.+.......+..+....+--. ....-.++.|+-
T Consensus 55 aiV~sItFGKy~K~H-vCNl-----K~fkv~gG~~~~~m~ell-~~gLkND~~~Etf~l~~~~~~~~-~~~fP~rYIKIv 126 (199)
T PF06588_consen 55 AIVKSITFGKYEKPH-VCNL-----KKFKVYGGMDEENMIELL-HGGLKNDSNPETFNLKHKTNNGI-ENYFPCRYIKIV 126 (199)
T ss_pred eEEEEEeccccccCc-cccc-----eeeEEeccCCHHHHHHHH-hhhccCCCCCceEEeEEecCCcc-cceeeeeeeEEe
Confidence 578899999998764 3344 222222112333332222 33342222234444443322100 123456889999
Q ss_pred cccCC-CCCCEEEEEeCceEEe--eCHHHHH
Q 015277 165 AHRLF-PNARFSLWIDGKLELV--VDPYQIL 192 (410)
Q Consensus 165 pHrLF-Pny~ySIWIDgki~L~--~DP~~lL 192 (410)
|..-. |++.||||- ++|. .||..+-
T Consensus 127 PL~swGpsFNfSIWy---VeL~Gi~dp~~v~ 154 (199)
T PF06588_consen 127 PLQSWGPSFNFSIWY---VELSGIDDPDIVQ 154 (199)
T ss_pred chhhcCCCCceEEEE---EEEeccCCHHHHH
Confidence 97665 699999996 6666 5665543
No 23
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=22.46 E-value=80 Score=30.86 Aligned_cols=78 Identities=22% Similarity=0.404 Sum_probs=45.6
Q ss_pred ccceeeeecCCcccccCCCCCCCCCCCChhhccccccCCCCeeeecccccCCCCCCCCccCChhhHHHHhccCcEEEEEe
Q 015277 11 LKNLTYITEPVLNREAEFGGSDFGGYPPLAQRNNSYDIRESMSVHCGFVKGKPGRGTGYDLDEEDILDMEQCHGIVVVSA 90 (410)
Q Consensus 11 ~~~l~y~~~~~~~~~~~~~~~~FgG~~s~~~r~~sf~~~~~~~vhCgf~~g~~~~~~gf~i~e~d~~~m~~c~kvVVyTA 90 (410)
++|+.-+.+-++..+ +.+++||.+- -+||.-|.-|=+. |++.|-|+ + |
T Consensus 7 vk~i~~lne~Elq~g-------~~~~~SWH~~-----YkdsA~Iyiggl~--------~~LtEgDi--------l----~ 54 (219)
T KOG0126|consen 7 VKNIQKLNERELQLG-------IADKKSWHQE-----YKDSAYIYIGGLP--------YELTEGDI--------L----C 54 (219)
T ss_pred HHHHHHhhHHhhccc-------cccccchhhh-----cccceEEEECCCc--------ccccCCcE--------E----E
Confidence 345555554433322 5567788653 3566666544333 88888664 3 4
Q ss_pred eeCCCcccCCC-----CCCCccCCCCeeEEEEechhh
Q 015277 91 IFGAFDDINQP-----SNISEYSRKTVCFVMFVDEET 122 (410)
Q Consensus 91 IFG~YD~L~~P-----~~is~~s~~~VcFi~FtD~~t 122 (410)
+|-.|-.+..- +..++ .+++||+|.-|+.+
T Consensus 55 VFSqyGe~vdinLiRDk~TGK--SKGFaFLcYEDQRS 89 (219)
T KOG0126|consen 55 VFSQYGEIVDINLIRDKKTGK--SKGFAFLCYEDQRS 89 (219)
T ss_pred EeeccCceEEEEEEecCCCCc--ccceEEEEecCccc
Confidence 46666554322 23332 37999999999865
No 24
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=22.10 E-value=86 Score=29.03 Aligned_cols=50 Identities=26% Similarity=0.183 Sum_probs=35.6
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCcccCCCCCCCCCCcceEEEcccC
Q 015277 201 ATFAISRHYKRFDVLVEAEANKAAKKYDNASIDFQIEFYKNEGLTPYSEAKLPITSDVPEGCVIIREHV 269 (410)
Q Consensus 201 ~~~Ais~Hp~R~cvYEEA~a~~~~~K~~~~~I~~Qm~~Yk~eGlp~~~~~k~P~~sgL~E~~vIiR~H~ 269 (410)
-.++-|.-|+|..+ =.|-|-+.+.|++|+-.+-+-|+++ +.-+||+|.-+
T Consensus 9 KGis~SAlPY~r~~-------PtWlK~~~ddvkeqI~K~akKGltp------------sqIGviLRDsh 58 (151)
T KOG0400|consen 9 KGISGSALPYRRSV-------PTWLKLTADDVKEQIYKLAKKGLTP------------SQIGVILRDSH 58 (151)
T ss_pred cccccCccccccCC-------cHHHhcCHHHHHHHHHHHHHcCCCh------------hHceeeeeccc
Confidence 34555666666543 2355668899999999999999986 22478888753
Done!