Query 015277
Match_columns 410
No_of_seqs 120 out of 139
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 09:47:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015277.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015277hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 81.7 0.73 2.5E-05 43.6 2.8 96 110-209 34-136 (276)
2 1g9r_A Glycosyl transferase; a 80.7 1.3 4.5E-05 42.1 4.3 109 160-300 84-198 (311)
3 3u2u_A Glycogenin-1, GN-1, GN1 35.8 61 0.0021 30.6 6.2 52 141-193 57-117 (263)
4 1ll2_A Glycogenin-1; protein-s 26.5 59 0.002 31.5 4.5 52 141-193 56-116 (333)
5 3iot_A Maltose-binding protein 21.3 20 0.00068 34.8 0.0 11 292-302 355-365 (449)
6 2ope_A PILX; type IV pilin, mi 10.6 96 0.0033 27.1 1.5 11 171-181 85-95 (128)
7 3mx7_A FAS apoptotic inhibitor 9.9 73 0.0025 26.2 0.4 14 169-182 72-85 (90)
8 4gqb_C Histone H4 peptide; TIM 9.6 1.3E+02 0.0046 19.2 1.5 13 390-402 12-24 (26)
9 1j5s_A Uronate isomerase; TM00 8.3 1.5E+02 0.0052 30.6 2.1 22 51-72 298-326 (463)
10 1o7q_A N-acetyllactosaminide a 8.1 25 0.00087 34.4 -3.5 74 111-187 81-154 (289)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=81.68 E-value=0.73 Score=43.55 Aligned_cols=96 Identities=18% Similarity=0.191 Sum_probs=55.3
Q ss_pred CCeeEEEEechhhHHHHhhccCCCCCCccc-ceEEEEcCCCCCCCccccCC-----cceeecccCCC-CCCEEEEEeCce
Q 015277 110 KTVCFVMFVDEETEAYLKANSGLDRTKKIG-IWRIVVIHNPPYSDARRTGK-----IPKLLAHRLFP-NARFSLWIDGKL 182 (410)
Q Consensus 110 ~~VcFi~FtD~~tl~~l~~~~~~~~~~~~g-~WrIV~V~~lpy~D~rrngR-----ipKiLpHrLFP-ny~ySIWIDgki 182 (410)
..++|++++|+.+......-..+-. ..| .-+++.++...+.....+.+ +.|++...+|| +++--||+|+-+
T Consensus 34 ~~~~~~il~~~is~~~~~~L~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~ 111 (276)
T 3tzt_A 34 RIFDVYLIHSRISEDKLKDLGEDLK--KFSYTLYPIRATDDLFSFAKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDM 111 (276)
T ss_dssp CCEEEEEEESCCCHHHHHHHHHHHH--TTTCEEEEEECC-------------CHHHHHHHTHHHHSCTTCCEEEEECSSE
T ss_pred CceEEEEEeCCCCHHHHHHHHHHHH--HcCCEEEEEEeCHHHHhcCccccccCHHHHHHHHHHHHcccccCeEEEEeCCe
Confidence 4789999999765432211000000 011 22333333322222111222 56888899999 699999999999
Q ss_pred EEeeCHHHHHHHHhhccCCcEEEecCC
Q 015277 183 ELVVDPYQILERHLWRKNATFAISRHY 209 (410)
Q Consensus 183 ~L~~DP~~lLe~~L~r~~~~~Ais~Hp 209 (410)
.+.+|+..|.+.-+ ++..+|+..+.
T Consensus 112 iv~~di~~L~~~dl--~~~~~aav~d~ 136 (276)
T 3tzt_A 112 LVINPLDDLLRTDI--SDYILAAASHT 136 (276)
T ss_dssp EECSCSHHHHTCCC--TTSSEEEEEC-
T ss_pred eecCCHHHHhhcCC--CCCeEEEEEec
Confidence 99999999987444 45678887654
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=80.75 E-value=1.3 Score=42.12 Aligned_cols=109 Identities=12% Similarity=0.135 Sum_probs=66.9
Q ss_pred cceeecccCCCCCCEEEEEeCceEEeeCHHHHHHHHhhccCCcEEEecCCCCCCHHHHHHHHHHhccCChHHHHHHHHHH
Q 015277 160 IPKLLAHRLFPNARFSLWIDGKLELVVDPYQILERHLWRKNATFAISRHYKRFDVLVEAEANKAAKKYDNASIDFQIEFY 239 (410)
Q Consensus 160 ipKiLpHrLFPny~ySIWIDgki~L~~DP~~lLe~~L~r~~~~~Ais~Hp~R~cvYEEA~a~~~~~K~~~~~I~~Qm~~Y 239 (410)
+.|++...+||+++-.||||+-+.+.+|+..|.+.=+ ++..+|+..+ | +.+ ..+ ...
T Consensus 84 y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l--~~~~~aav~d----~-~~~------~~~----------~~~ 140 (311)
T 1g9r_A 84 YARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDL--GDNWLGASID----L-FVE------RQE----------GYK 140 (311)
T ss_dssp GGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCC--TTCSEEEEEC----H-HHH------TST----------THH
T ss_pred HHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCC--CCcEEEEEec----c-chh------hhH----------HHH
Confidence 4577778889999999999999999999999887434 4566777653 2 111 010 112
Q ss_pred HHCCCCCcccCCCCCCCCCCcceEEEcccC-----CchhHHHHHHHHHHh-cCCCCCCchHHHHHhH
Q 015277 240 KNEGLTPYSEAKLPITSDVPEGCVIIREHV-----PISNLFVCLWFNEVD-RFTSRDQISFSTVRDK 300 (410)
Q Consensus 240 k~eGlp~~~~~k~P~~sgL~E~~vIiR~H~-----~~snlfmclWfnEv~-rfs~RDQLSF~Yvl~K 300 (410)
...|+++ ..+.+-++|++=+-. ...+. ...|.++.. ++.--||=-++.++..
T Consensus 141 ~~~~~~~--------~~~yfNsGv~linl~~~r~~~~~~~-~~~~~~~~~~~~~~~DQd~lN~~f~~ 198 (311)
T 1g9r_A 141 QKIGMAD--------GEYYFNAGVLLINLKKWRRHDIFKM-SSEWVEQYKDVMQYQDQDILNGLFKG 198 (311)
T ss_dssp HHTTCCT--------TSCCEEEEEEEECHHHHTTSCHHHH-HHHHHHHHTTTCSSHHHHHHHHHHTT
T ss_pred HhcCCCC--------CCceEeeeeeeeeHHHHHhcchHHH-HHHHHHhccCcCccCCcCHHHHHHcC
Confidence 3446643 234566788763221 22222 123444432 3555799888888764
No 3
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=35.75 E-value=61 Score=30.58 Aligned_cols=52 Identities=10% Similarity=0.141 Sum_probs=38.1
Q ss_pred eEEEEcCCCCCCC---------ccccCCcceeecccCCCCCCEEEEEeCceEEeeCHHHHHH
Q 015277 141 WRIVVIHNPPYSD---------ARRTGKIPKLLAHRLFPNARFSLWIDGKLELVVDPYQILE 193 (410)
Q Consensus 141 WrIV~V~~lpy~D---------~rrngRipKiLpHrLFPny~ySIWIDgki~L~~DP~~lLe 193 (410)
++++.|+.+...+ ++...-+.|++..+|. +|+--||+|+-+.+..|+..|.+
T Consensus 57 ~~vi~V~~l~~~~~~~~~~~~rp~~~~~~~kl~~~~l~-~~~~vlylD~D~~v~~~~~~Lf~ 117 (263)
T 3u2u_A 57 DEVIMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLT-QYSKCVFMDADTLVLANIDDLFD 117 (263)
T ss_dssp SEEEECCCCCCCCHHHHHHTTCTTGGGGGGGGGGGGCT-TCSEEEEECTTEEECSCCGGGGG
T ss_pred CeEEEeeecCCcchhhhhhhcCcchhHHhHHHHhcccc-CcceEEEEcCCEeeccCHHHHhC
Confidence 6678886554322 2234457799988876 69999999999999999776653
No 4
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=26.51 E-value=59 Score=31.45 Aligned_cols=52 Identities=12% Similarity=0.153 Sum_probs=37.4
Q ss_pred eEEEEcCCCCCCCc---------cccCCcceeecccCCCCCCEEEEEeCceEEeeCHHHHHH
Q 015277 141 WRIVVIHNPPYSDA---------RRTGKIPKLLAHRLFPNARFSLWIDGKLELVVDPYQILE 193 (410)
Q Consensus 141 WrIV~V~~lpy~D~---------rrngRipKiLpHrLFPny~ySIWIDgki~L~~DP~~lLe 193 (410)
++|+.|+.+...++ .-..-+.|++...| ++|+-.||||+-+.+..|+..|.+
T Consensus 56 ~~v~~v~~l~~~~~~~~~~~~~~~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~ 116 (333)
T 1ll2_A 56 DEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFE 116 (333)
T ss_dssp SEEEECCTTSTTSTTHHHHHHCGGGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGG
T ss_pred CEEEEEeecCCcchhhcccccccchHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhC
Confidence 46777765543221 11223678888875 899999999999999999887764
No 5
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=21.26 E-value=20 Score=34.85 Aligned_cols=11 Identities=0% Similarity=-0.176 Sum_probs=4.8
Q ss_pred chHHHHHhHhc
Q 015277 292 ISFSTVRDKLW 302 (410)
Q Consensus 292 LSF~Yvl~Kl~ 302 (410)
.+-.=++.++.
T Consensus 355 ~~~eeal~~~~ 365 (449)
T 3iot_A 355 QTVDAALAAAQ 365 (449)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 34444444443
No 6
>2ope_A PILX; type IV pilin, minor pilin, bacterial pathogenesis, adhesion, aggregation, filament, cell adhesion; 2.40A {Neisseria meningitidis} PDB: 2opd_A
Probab=10.58 E-value=96 Score=27.06 Aligned_cols=11 Identities=18% Similarity=0.655 Sum_probs=9.7
Q ss_pred CCCEEEEEeCc
Q 015277 171 NARFSLWIDGK 181 (410)
Q Consensus 171 ny~ySIWIDgk 181 (410)
.|.||+|||+.
T Consensus 85 gYtlsvwmdS~ 95 (128)
T 2ope_A 85 GYTLSVWMNSV 95 (128)
T ss_dssp SCCCEEEEETT
T ss_pred CeeEEEEEccC
Confidence 69999999984
No 7
>3mx7_A FAS apoptotic inhibitory molecule 1; beta sheet, apoptosis; 1.76A {Homo sapiens}
Probab=9.87 E-value=73 Score=26.18 Aligned_cols=14 Identities=29% Similarity=0.219 Sum_probs=11.9
Q ss_pred CCCCCEEEEEeCce
Q 015277 169 FPNARFSLWIDGKL 182 (410)
Q Consensus 169 FPny~ySIWIDgki 182 (410)
...|.|+++||||-
T Consensus 72 ~~~y~YtL~VngKs 85 (90)
T 3mx7_A 72 GFAYEYTLEINGKS 85 (90)
T ss_dssp TTEEEEEEEETTEE
T ss_pred CccEEEEEEECCEe
Confidence 46799999999984
No 8
>4gqb_C Histone H4 peptide; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=9.63 E-value=1.3e+02 Score=19.16 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=9.6
Q ss_pred CCccccccccccC
Q 015277 390 RRSASRRHRKTIS 402 (410)
Q Consensus 390 ~~~~~~~~~~~~~ 402 (410)
.+.|.+||||+..
T Consensus 12 gkggakrhrkv~~ 24 (26)
T 4gqb_C 12 GKGGAKRHRKVXX 24 (26)
T ss_pred Cccchhhhccccc
Confidence 3557789999864
No 9
>1j5s_A Uronate isomerase; TM0064, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.85A {Thermotoga maritima} SCOP: c.1.9.8
Probab=8.27 E-value=1.5e+02 Score=30.57 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=18.9
Q ss_pred CeeeecccccC-------CCCCCCCccCC
Q 015277 51 SMSVHCGFVKG-------KPGRGTGYDLD 72 (410)
Q Consensus 51 ~~~vhCgf~~g-------~~~~~~gf~i~ 72 (410)
.|++|.|+.+. +=|.++|||+-
T Consensus 298 ~mQlH~G~~Rn~n~~~~~~~G~d~G~D~~ 326 (463)
T 1j5s_A 298 VTQLHIGALRDYRDSLFKTLGPDSGGDIS 326 (463)
T ss_dssp EEEEEECEECSCSHHHHHHTCSSSSCCEE
T ss_pred cEEEeecCCCCCCHHHHHHhCCCCCCCCc
Confidence 69999999987 56889999983
No 10
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=8.05 E-value=25 Score=34.42 Aligned_cols=74 Identities=14% Similarity=0.151 Sum_probs=0.0
Q ss_pred CeeEEEEechhhHHHHhhccCCCCCCcccceEEEEcCCCCCCCccccCCcceeecccCCCCCCEEEEEeCceEEeeC
Q 015277 111 TVCFVMFVDEETEAYLKANSGLDRTKKIGIWRIVVIHNPPYSDARRTGKIPKLLAHRLFPNARFSLWIDGKLELVVD 187 (410)
Q Consensus 111 ~VcFi~FtD~~tl~~l~~~~~~~~~~~~g~WrIV~V~~lpy~D~rrngRipKiLpHrLFPny~ySIWIDgki~L~~D 187 (410)
.|-|+.|||+... ++ .-.+.+.......+|-.-..=++...+|..-+-+...-+++-++||-+.+|+++.+..+
T Consensus 81 ~v~YYVFTD~~~~--~p-~v~l~~~r~~~V~~i~~~~~W~d~sm~Rm~~i~~~~~~~~~~evDYLf~~dvd~~F~~~ 154 (289)
T 1o7q_A 81 PVIFYIMVDDVSR--MP-LIELGPLRSFKVFKIKPEKRWQDISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDK 154 (289)
T ss_dssp CEEEEEEESCGGG--CC-CCCCCTTEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHTHHHHCSEEEEECSSEEECSC
T ss_pred eEEEEEEeCChhh--CC-ccccCCCCeEEEEEeccccCCchhHHHHHHHHHHHHHHHHhhcCCEEEEeeCCcEeecc
Done!