BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015279
(410 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of
Lgtc
Length = 311
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 92/223 (41%), Gaps = 47/223 (21%)
Query: 179 AGANLS--DTTPRTFAS-KLQARSPKYISLLNHLRIYIPELFPHLDKVVFLDDDIVIQRD 235
G N+ D P FA L R +IS+ + R+ + E DKV++LD D++++
Sbjct: 55 GGGNIRFIDVNPEDFAGFPLNIR---HISITTYARLKLGEYIADCDKVLYLDIDVLVRDS 111
Query: 236 LSPLWEIDLGGKVNGA-----VETCRGEDEWVMSKRFRNYFNFSHPLIAKHLDPEECAWA 290
L+PLW+ DLG GA VE G + + YFN
Sbjct: 112 LTPLWDTDLGDNWLGACIDLFVERQEGYKQKIGMADGEYYFN------------------ 153
Query: 291 YGMNIFDLRAWRKTNIRETYHSWLKENLKSNLTMWKLGTLPPALIAFKGHVHPIDPSWHL 350
G+ + +L+ WR+ +I + W+++ ++ ++ + L FKG V + ++
Sbjct: 154 AGVLLINLKKWRRHDIFKMSCEWVEQ--YKDVMQYQDEDILNGL--FKGGVCYANSRFNF 209
Query: 351 LGLGYQ--------------NKTSIESVKKAAVIHYNGQSKPW 379
+ Y + +V AV HY G +KPW
Sbjct: 210 MPTNYAFMANRFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPW 252
>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex
With Mn And Udp-2f-Galactose
pdb|1GA8|A Chain A, Crystal Structure Of Galacosyltransferase Lgtc In Complex
With Donor And Acceptor Sugar Analogs
Length = 311
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 91/223 (40%), Gaps = 47/223 (21%)
Query: 179 AGANLS--DTTPRTFAS-KLQARSPKYISLLNHLRIYIPELFPHLDKVVFLDDDIVIQRD 235
G N+ D P FA L R +IS+ + R+ + E DKV++LD D++++
Sbjct: 55 GGGNIRFIDVNPEDFAGFPLNIR---HISITTYARLKLGEYIADCDKVLYLDIDVLVRDS 111
Query: 236 LSPLWEIDLGGKVNGA-----VETCRGEDEWVMSKRFRNYFNFSHPLIAKHLDPEECAWA 290
L+PLW+ DLG GA VE G + + YFN
Sbjct: 112 LTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGXADGEYYFN------------------ 153
Query: 291 YGMNIFDLRAWRKTNIRETYHSWLKENLKSNLTMWKLGTLPPALIAFKGHVHPIDPSWHL 350
G+ + +L+ WR+ +I + W+++ ++ ++ + L FKG V + ++
Sbjct: 154 AGVLLINLKKWRRHDIFKXSSEWVEQ--YKDVXQYQDQDILNGL--FKGGVCYANSRFNF 209
Query: 351 LGLGYQ--------------NKTSIESVKKAAVIHYNGQSKPW 379
Y + +V AV HY G +KPW
Sbjct: 210 XPTNYAFXANWFASRHTDPLYRDRTNTVXPVAVSHYCGPAKPW 252
>pdb|3SPD|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|C Chain C, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|D Chain D, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPL|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|C Chain C, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|D Chain D, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
Length = 204
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 5/39 (12%)
Query: 202 YISLLNHLRIYI--PELFPHLDKVVFLDDDIVIQRDLSP 238
++S ++L++YI PE + V++ DDD+V+ RD+ P
Sbjct: 3 HMSFRDNLKVYIESPESY---KNVIYYDDDVVLVRDMFP 38
>pdb|3SP4|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 From
Schizosaccharomyces Pombe
pdb|3SP4|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 From
Schizosaccharomyces Pombe
Length = 204
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 5/39 (12%)
Query: 202 YISLLNHLRIYI--PELFPHLDKVVFLDDDIVIQRDLSP 238
++S ++L++YI PE + V++ DDD+V+ RD+ P
Sbjct: 3 HMSFRDNLKVYIESPESY---KNVIYYDDDVVLVRDMFP 38
>pdb|1YLE|A Chain A, The Structure Of ArginineORNITHINE SUCCINYLTRANSFERASE
SUBUNIT AI From Pseudomonas Aeruginosa
Length = 342
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 170 RNYYHGNHVAGANLSDTTPRTFASKLQARSPKYISLL 206
RN++ N++ LS RTF ++L P Y+ LL
Sbjct: 184 RNFFDLNYIEAEKLSGLKSRTFLAELMPHYPIYVPLL 220
>pdb|2FGX|A Chain A, Solution Nmr Structure Of Protein Ne2328 From Nitrosomonas
Europaea. Northeast Structural Genomics Consortium
Target Net3
Length = 107
Score = 28.1 bits (61), Expect = 9.1, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 129 SWFALNPVSPAIVEVKGIHQFDWLTRENVPVLEAVENHDGIRNYYHGNHVAGANLS 184
SWF L ++ + G L + VPVL AV + +Y+ + V GA LS
Sbjct: 57 SWFELE-----VINIDGNEHLTRLYNDRVPVLFAVNEDKELCHYFLDSDVIGAYLS 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,759,874
Number of Sequences: 62578
Number of extensions: 527005
Number of successful extensions: 1407
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1399
Number of HSP's gapped (non-prelim): 11
length of query: 410
length of database: 14,973,337
effective HSP length: 101
effective length of query: 309
effective length of database: 8,652,959
effective search space: 2673764331
effective search space used: 2673764331
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)