Query 015281
Match_columns 410
No_of_seqs 182 out of 355
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 04:49:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015281.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015281hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1901 Uncharacterized high-g 100.0 1.9E-70 4.1E-75 561.3 26.9 271 130-408 176-447 (487)
2 PF04146 YTH: YT521-B-like dom 100.0 3.6E-51 7.8E-56 360.4 8.9 136 259-400 1-140 (140)
3 KOG1902 Putative signal transd 100.0 8.2E-44 1.8E-48 351.8 10.1 150 246-403 60-214 (441)
4 PRK00809 hypothetical protein; 95.0 0.12 2.7E-06 46.8 8.1 122 261-394 2-142 (144)
5 PF01878 EVE: EVE domain; Int 84.1 3.5 7.5E-05 36.2 6.5 128 261-396 1-143 (143)
6 PRK02268 hypothetical protein; 49.7 30 0.00066 31.8 4.8 123 260-397 2-136 (141)
7 KOG0921 Dosage compensation co 25.1 3.9E+02 0.0085 32.2 9.3 22 131-153 1196-1217(1282)
8 PF08683 CAMSAP_CKK: Microtubu 18.3 2.9E+02 0.0064 24.9 5.4 58 265-326 10-67 (123)
9 PF10539 Dev_Cell_Death: Devel 16.2 2.8E+02 0.0061 25.4 4.8 115 269-397 9-130 (130)
10 cd05840 SPBC215_ISWI_like The 10.9 2.4E+02 0.0053 23.8 2.7 31 265-300 61-91 (93)
No 1
>KOG1901 consensus Uncharacterized high-glucose-regulated protein [General function prediction only]
Probab=100.00 E-value=1.9e-70 Score=561.27 Aligned_cols=271 Identities=53% Similarity=0.803 Sum_probs=236.7
Q ss_pred CCCccCccccCCCCcccCCCcccCCCCCCCCCCCCCCCCCccccCCCccccCCCCCCCCCCCCC-CcccccccCCCCCCC
Q 015281 130 AFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRGRGYGASGSGKE-NVDGLNELNKGPRAK 208 (410)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~w~~~~~k~~~r~~~~~~~~~~~~-~~d~~~e~nrgpr~~ 208 (410)
..+|.+.++.+.+.||.+..+...+..|+...|.....+|+|..+++..+..+ ........++ ..+.++|+|||||+.
T Consensus 176 ~~~~~~~~~~~~~~~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~nrg~~s~ 254 (487)
T KOG1901|consen 176 AQGYYDQFSSQPGLYGSYQPTGGSGPPYGQSLYANQPKGRSPYGVDNSRPTWG-INYPRLPSDEAGSDSLNEQNRGPRSS 254 (487)
T ss_pred ccccccccccCcccccCccccCCCCCccCcccccccccCCCCcccCCCccccc-ccCCCccccccccccccccccCcccc
Confidence 57788889988889999888877788999999999999999999986544333 2222223333 378999999999999
Q ss_pred CCCCCCCCCCceecccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEEecCChhhHHHHhhcCeeecCCch
Q 015281 209 GFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNG 288 (410)
Q Consensus 209 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qyN~~df~~~~~~aRFFIIKS~nedNIhkSikygVWaTTp~n 288 (410)
..+++.........+... +......+++++++||.++|+..+.+||||||||++|||||+||||+||++|+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~-------s~~~~~~~~~~~~~yn~~~f~~~~~nAkfFVIKSySEDdVHkSIKY~vWsST~~G 327 (487)
T KOG1901|consen 255 DSRGQDINSSGPTEAGSA-------SAPESNESVKRRDRYNPPDFLTDYSNAKFFVIKSYSEDDVHKSIKYNVWSSTLNG 327 (487)
T ss_pred cccCccccCCcchhcccc-------ccccccccccChhhcCccccccccccceEEEEeccChhhhhhhcccceeecccCC
Confidence 998887655433333221 1212235788999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCeeEEEEeeCCCCCCCCcccccccccccccceeEEEeecCCCCCcccccc
Q 015281 289 NKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITL 368 (410)
Q Consensus 289 nkKLn~AFkea~e~~~~~~V~LfFSVN~Sg~FqG~AeM~Spvdf~k~~~~Wqqdkw~G~F~VkWl~vkdVPf~~lkHI~N 368 (410)
|||||+||++++++.++||||||||||.||||||+|||++||||+++++||+||||.|.|+|+||+|||||+..|+||++
T Consensus 328 NKkLdaAYreak~~~~~cPvfLfFSVNaSGqFCGvAEMvgPVdfn~~~~~WqQDKW~G~FpVKWhiVKDVPNs~lrHI~L 407 (487)
T KOG1901|consen 328 NKKLDAAYREAKKKSGKCPVFLFFSVNASGQFCGVAEMVGPVDFNKDMEYWQQDKWSGSFPVKWHIVKDVPNSQLRHIIL 407 (487)
T ss_pred chhhHHHHHHhhhccCCCCceEEEEEcCCccccceeeeccceecccccchhhhcccceecceeeEEEeeCCccceeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccCCCCcccChHHHHHHHHHHHhccccccccc
Q 015281 369 ENNENKPVTNSRDTQEVCPFLFLSLIFILLLLCFVTQKHK 408 (410)
Q Consensus 369 ~~NeNKPVt~SRDgQEI~~e~G~qLLkIF~~~~~~~q~~~ 408 (410)
++|||||||++||+|||.+++|+|||+||..+.++|-.-|
T Consensus 408 eNNeNKPVTnSRDTQEV~leqGievlkIfk~y~~~TSiLD 447 (487)
T KOG1901|consen 408 ENNENKPVTNSRDTQEVPLEQGIEVLKIFKSYAAKTSILD 447 (487)
T ss_pred ecCCCCCcccccccceecHHHHHHHHHHHHhhcceeeecc
Confidence 9999999999999999999999999999999998875443
No 2
>PF04146 YTH: YT521-B-like domain; InterPro: IPR007275 A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells []. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanaisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B, Q9QY02 from SWISSPROT, is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner []. The domain is predicted to have four alpha helices and six beta strands []. In plant cells environmental stimuli, which light, pathogens, hormones, and abiotic stresses, elicit changes in the cytosolic Ca levels but little is known of the cytosolic-nuclear Ca-signaling pathway; where gene regulation occurs to respond appropriately to the stress. It has been demonstrated that two novel Arabidopsis thaliana (Mouse-ear cress) proteins, (ECT1 and ECT2), specifically associated with Calcineurin B-Like-Interacting Protein Kinase1 (CIPK1), a member of Ser/Thr protein kinases that interact with the calcineurin B-like Ca-binding proteins. These two proteins contain a very similar C-terminal region (180 amino acids in length, 81% similarity), which is required and sufficient for both interaction with CIPK1 and translocation to the nucleus. This domain, the YTH-domain, is conserved across all eukaryotes and suggests that the conserved C-terminal region plays a critical role in relaying the cytosolic Ca-signals to the nucleus, thereby regulating gene expression [].; PDB: 2YUD_A 2YU6_A.
Probab=100.00 E-value=3.6e-51 Score=360.38 Aligned_cols=136 Identities=46% Similarity=0.818 Sum_probs=114.2
Q ss_pred CceEEEEecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCeeEEEEeeCCCCCCCCccc
Q 015281 259 DAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEY 338 (410)
Q Consensus 259 ~aRFFIIKS~nedNIhkSikygVWaTTp~nnkKLn~AFkea~e~~~~~~V~LfFSVN~Sg~FqG~AeM~Spvdf~k~~~~ 338 (410)
++|||||||++++||++|++||||+|+++++++|++||+++ ++||||||||+|++|||||+|+|+++++....+
T Consensus 1 ~~rfFiiKS~~~~ni~~s~~~gvW~t~~~~~~~L~~Af~~~------~~V~L~FSvn~S~~F~G~A~M~s~~~~~~~~~~ 74 (140)
T PF04146_consen 1 NARFFIIKSFNEENIHLSIKYGVWATQPKNEKKLNEAFKES------RNVYLFFSVNGSGHFQGYARMTSPIDPDSPKPF 74 (140)
T ss_dssp --EEEEEEESSCHHHHHHHHCTEEE--CCCHHHHHHHHHHS------S-EEEEEEETTTSEEEEEEEEECECCSSS----
T ss_pred CcEEEEEEECCHHHHHHHHhCCEEcccccchHHHHHHHHhC------CCEEEEEeecCcceEEEEEEEccCCCCcccCcc
Confidence 58999999999999999999999999999999999999998 489999999999999999999999999988999
Q ss_pred cc----ccccccccceeEEEeecCCCCCccccccCCCCCCCcccCCCCcccChHHHHHHHHHHHhc
Q 015281 339 WQ----QDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVCPFLFLSLIFILLLL 400 (410)
Q Consensus 339 Wq----qdkw~G~F~VkWl~vkdVPf~~lkHI~N~~NeNKPVt~SRDgQEI~~e~G~qLLkIF~~~ 400 (410)
|. ..+|+|.|+|+||++++|||+.++||+|++||||||+++||||||++++|++||+||+++
T Consensus 75 w~~~~~~~~~~g~F~v~Wl~~~~lpf~~~~hl~n~~n~~~pV~~~rDgqEi~~~~G~~l~~~f~~~ 140 (140)
T PF04146_consen 75 WQQDSSSSKWGGPFRVEWLRVKDLPFSKLRHLRNPLNENKPVKISRDGQEIEPEIGEQLLKIFDNQ 140 (140)
T ss_dssp --SS-SGCGG-SEEEEEEEE-S-EEHHHHTT-EETTTTTEETTS--TTEEE-CCHHHHHHHHCGT-
T ss_pred ccccccccccCCceEEEEEECCcCChHHhcccccccCCCcEEEECCCCEEeCHHHHHHHHHHHhhC
Confidence 95 368999999999999999999999999999999999999999999999999999999864
No 3
>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]
Probab=100.00 E-value=8.2e-44 Score=351.80 Aligned_cols=150 Identities=35% Similarity=0.545 Sum_probs=137.7
Q ss_pred CCCCCCCCCCCCCCceEEEEecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCeeEEEE
Q 015281 246 EKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAE 325 (410)
Q Consensus 246 ~qyN~~df~~~~~~aRFFIIKS~nedNIhkSikygVWaTTp~nnkKLn~AFkea~e~~~~~~V~LfFSVN~Sg~FqG~Ae 325 (410)
++++....+. ..+|||||||.|.+||++|++.|||+||+.|++||+.||+++ ..||||||||.||||||||+
T Consensus 60 ~~~~~ss~~~--~~~rYFIiKS~N~eN~elSvqkGiWaTq~sNE~kLn~AF~~s------~~ViLIFSVn~SghFQG~Ar 131 (441)
T KOG1902|consen 60 DQTSKLKYVL--QDARYFIIKSNNHENVELSVQKGVWSTQPSNEKKLNLAFRSS------RSVILIFSVNESGHFQGFAR 131 (441)
T ss_pred hhcccccccC--CceEEEEEecCCccceeeehhcceeccccccHHHHHHHHhhc------CcEEEEEEecccccchhhhh
Confidence 4555554444 689999999999999999999999999999999999999998 58999999999999999999
Q ss_pred eeCCCCCCCCcccccc-----cccccccceeEEEeecCCCCCccccccCCCCCCCcccCCCCcccChHHHHHHHHHHHhc
Q 015281 326 MVGPVDFDKTVEYWQQ-----DKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVCPFLFLSLIFILLLL 400 (410)
Q Consensus 326 M~Spvdf~k~~~~Wqq-----dkw~G~F~VkWl~vkdVPf~~lkHI~N~~NeNKPVt~SRDgQEI~~e~G~qLLkIF~~~ 400 (410)
|+|+|-..++...|.+ ..|++.|+||||++++|||.++.||+|||||||||++|||||||++++|+|||.|+...
T Consensus 132 MsS~IG~~~~q~~W~~~~G~~a~~G~~FkVkWiRl~eLpFqkt~hL~NP~NdnkpVKISRD~QELep~VGEqL~~Ll~~~ 211 (441)
T KOG1902|consen 132 MSSEIGHGGSQIHWVLPAGMSAMLGGVFKVKWIRLRELPFQKTAHLTNPWNENKPVKISRDGQELEPEVGEQLCLLLPPD 211 (441)
T ss_pred hcchhccCCCCccccccCCcccccCceeeEeEEeeccccchhhhhcCCcccccCceeecccccccChhHHHHHHHhcCCC
Confidence 9999988888767865 67999999999999999999999999999999999999999999999999999999876
Q ss_pred ccc
Q 015281 401 CFV 403 (410)
Q Consensus 401 ~~~ 403 (410)
+-.
T Consensus 212 p~~ 214 (441)
T KOG1902|consen 212 PSI 214 (441)
T ss_pred cch
Confidence 543
No 4
>PRK00809 hypothetical protein; Provisional
Probab=94.97 E-value=0.12 Score=46.78 Aligned_cols=122 Identities=13% Similarity=0.183 Sum_probs=74.6
Q ss_pred eEEEEecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeC------CCCCeeEEEEeeCCCCCCC
Q 015281 261 KFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVN------ASGQFVGVAEMVGPVDFDK 334 (410)
Q Consensus 261 RFFIIKS~nedNIhkSikygVWaTTp~nnkKLn~AFkea~e~~~~~~V~LfFSVN------~Sg~FqG~AeM~Spvdf~k 334 (410)
+|+|+=+ ++||+..+.++|||-.....-.-|. .. .....+||++-+ .-..|.|+|++++..-.+.
T Consensus 2 ~yWi~~~-~~~~~~~~~~~gv~g~~~~~rn~lr----~M----k~GD~v~fYhs~~~~~~~~~~~ivgi~eV~~~~y~D~ 72 (144)
T PRK00809 2 TYWLCIT-NEDNWEVIKDKNVWGVPERYKNTIE----KV----KPGDKLIIYVSQEYGAERLPGKIVGIYEVVSEWYEDS 72 (144)
T ss_pred ceEEEec-CHHHHHHHHhCCEeecchhhhhHHh----hC----CCCCEEEEEECCccCCCCCCceEEEEEEEecCcccCC
Confidence 6777777 8999999999999999654222111 11 124678888887 5789999999998752222
Q ss_pred Cccccc------ccccccccceeEEEeec--CCCCCcc----ccccCCCCCCCc-ccCCCCcccChHHHHHHH
Q 015281 335 TVEYWQ------QDKWVGCFPLKWLIIKD--VPNSSLR----HITLENNENKPV-TNSRDTQEVCPFLFLSLI 394 (410)
Q Consensus 335 ~~~~Wq------qdkw~G~F~VkWl~vkd--VPf~~lk----HI~N~~NeNKPV-t~SRDgQEI~~e~G~qLL 394 (410)
+ .+|. .+.+--..+|+++...+ ||...|. -|++.-.=...+ ..++ .||+.+--+-|+
T Consensus 73 t-~~~p~~~~~~~~~~p~rvdV~~~~~~~~~v~l~~L~~~L~fik~~~~w~~~l~R~~~--~~I~~~d~~~I~ 142 (144)
T PRK00809 73 T-PIFPAEPVRPKEIYPYRVKLKPVKIFEEPIDFKPLIPKLKFIENKKQWSGHLRNRAM--RPIPEEDYKLIE 142 (144)
T ss_pred c-cCCCccccCCCCCceEEEEEEEeeecCCcccHHHHHhhhhhhhcccccchhhhcCCC--ccCCHHHHHHHh
Confidence 2 2332 22233467899998888 7765551 112211101222 5566 788777665444
No 5
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=84.08 E-value=3.5 Score=36.20 Aligned_cols=128 Identities=14% Similarity=0.221 Sum_probs=63.7
Q ss_pred eEEEEecC----ChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeC-CCCCeeEEEEeeCCCCCC--
Q 015281 261 KFFIIKSY----SEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVN-ASGQFVGVAEMVGPVDFD-- 333 (410)
Q Consensus 261 RFFIIKS~----nedNIhkSikygVWaTTp~nnkKLn~AFkea~e~~~~~~V~LfFSVN-~Sg~FqG~AeM~Spvdf~-- 333 (410)
+|+|+|+. +-+++ .-.+..+|.-..+...+- ++++.+ . ..-+||+.-. ..+.|.|+|+.++..-.+
T Consensus 1 ~YWl~~~~P~~~~~~~~-~~~~~~~~~gv~~~~~~~--~l~~mk---~-GD~vifY~s~~~~~~ivai~~V~~~~~~d~~ 73 (143)
T PF01878_consen 1 RYWLLKANPENFSIDDL-EHWGVTVWDGVRNYQARK--NLKRMK---P-GDKVIFYHSGCKERGIVAIGEVVSEPYPDPT 73 (143)
T ss_dssp -EEEEEEBTTTSHHHHH-HHHSEEECHTEEEHHHHH--HHHC-----T-T-EEEEEETSSSS-EEEEEEEEEEEEEE-GG
T ss_pred CEEEEEeCCcccCHHHh-cccceEEEcCEeehhhhh--hhhcCC---C-CCEEEEEEcCCCCCEEEEEEEEeccccCCCc
Confidence 58999997 55555 444455555443322221 444432 2 3466667666 679999999999864221
Q ss_pred ---CCcccccccc--cccccceeEEEeec--CCCCCccccccCCCCCCCcccC-CCCcccChHHHHHHHHH
Q 015281 334 ---KTVEYWQQDK--WVGCFPLKWLIIKD--VPNSSLRHITLENNENKPVTNS-RDTQEVCPFLFLSLIFI 396 (410)
Q Consensus 334 ---k~~~~Wqqdk--w~G~F~VkWl~vkd--VPf~~lkHI~N~~NeNKPVt~S-RDgQEI~~e~G~qLLkI 396 (410)
....++.... ....++|+++..-+ |+...|+.. ..+.+-.-+... .--.+|..+.-..|+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~pi~l~~Lk~~-~~l~~l~~i~~~r~s~~~it~~~~~~I~~~ 143 (143)
T PF01878_consen 74 AFDPDSPYYDPKSNPKPYRVDVEYVKIFEKPIPLKELKAE-PELENLSFIRNKRLSVFPITEEDFEAIMEM 143 (143)
T ss_dssp GTSTTSTTBTTTSCSSSEEEEEEEEEEEEEEEEHHHHHC--GGGTTSHHHHTTT-SEEEE-HHHHHHHHHH
T ss_pred cccccccCcCCccCCCeeEEEEEEEEecCCCcCHHHHhcC-CccccChhhhcCCcCeEEECHHHHHHHHhC
Confidence 1111122211 23467888886554 444555432 112222223222 33457777777666654
No 6
>PRK02268 hypothetical protein; Provisional
Probab=49.69 E-value=30 Score=31.76 Aligned_cols=123 Identities=12% Similarity=0.130 Sum_probs=69.5
Q ss_pred ceEEEEecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeC-------CCCCeeEEEEeeCCCCC
Q 015281 260 AKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVN-------ASGQFVGVAEMVGPVDF 332 (410)
Q Consensus 260 aRFFIIKS~nedNIhkSikygVWaTTp~nnkKLn~AFkea~e~~~~~~V~LfFSVN-------~Sg~FqG~AeM~Spvdf 332 (410)
.+|.|+=. |+|++.+.++.|+|-.. |+.+. ..+.-+ ...-+|++|=. .-..|.+++++++.--+
T Consensus 2 ~~yWI~v~-s~~hv~~g~~~gf~qv~-hgK~a---pl~Rmk----pGD~ivyYsp~~~~~~~~~~qaftAig~V~~~~~Y 72 (141)
T PRK02268 2 MRYWIGVV-SAEHVRRGVEGGFMQVC-HGKAA---PLRRMK----PGDWIIYYSPKTTFGGKDKLQAFTAIGKVKDDEPY 72 (141)
T ss_pred cceEEEEc-cHHHHHHHHhCCEEEeC-CCccc---hhhcCC----CCCEEEEEeceEecCCCcccceEEEEEEEcCCceE
Confidence 35665544 79999999999999874 43321 122221 23567777722 34789999999986333
Q ss_pred CCCcccccccccccccceeEEEeecCCCCCc----cccccCCCCCCCcccCCCC-cccChHHHHHHHHHH
Q 015281 333 DKTVEYWQQDKWVGCFPLKWLIIKDVPNSSL----RHITLENNENKPVTNSRDT-QEVCPFLFLSLIFIL 397 (410)
Q Consensus 333 ~k~~~~Wqqdkw~G~F~VkWl~vkdVPf~~l----kHI~N~~NeNKPVt~SRDg-QEI~~e~G~qLLkIF 397 (410)
...+. .+-.-=.++|+|+.+.++|+.-| +.|++.-+=.... |=| -||+.+-.+.|.+.+
T Consensus 73 q~~m~---~~f~P~Rr~v~~~~~~e~pi~pLi~~L~Fi~~k~~Wg~~f---r~g~~eI~e~Df~~I~~am 136 (141)
T PRK02268 73 QVEMA---PGFIPWRRDVDYYPCAETPIRPLLDHLDFTEDRKNWGYQF---RFGHFEISKHDFETIASAM 136 (141)
T ss_pred ecccC---CCceeEEEEeeEeecCccchHHhhcccceeeCcchhhHhh---cCCcEecCHHHHHHHHHHh
Confidence 21110 00011146799999999998654 3444322212222 323 677666555444433
No 7
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=25.05 E-value=3.9e+02 Score=32.15 Aligned_cols=22 Identities=32% Similarity=0.375 Sum_probs=10.9
Q ss_pred CCccCccccCCCCcccCCCcccC
Q 015281 131 FGYMSQMYANNPMYGHYGNTFRA 153 (410)
Q Consensus 131 ~~~~~~~~~~~~~~~~~g~~~~~ 153 (410)
.||...-| .++-||+.++.++.
T Consensus 1196 ggys~gGy-gsGGYGgsa~~~~~ 1217 (1282)
T KOG0921|consen 1196 GGYSGGGY-GSGGYGGSAPSARA 1217 (1282)
T ss_pred CCCCCCCc-CCCCCCCCCCCCCC
Confidence 34444444 24566665555443
No 8
>PF08683 CAMSAP_CKK: Microtubule-binding calmodulin-regulated spectrin-associated; InterPro: IPR014797 This is the C-terminal domain of a family of eumetazoan proteins collectively defined as calmodulin-regulated spectrin-associated, or CAMSAP, proteins. CAMSAP proteins carry an N-terminal region that includes the CH domain, a central region including a predicted coiled-coil and this C-terminal, or CKK, domain - defined as being present in CAMSAP, KIAA1078 and KIAA1543, The C-terminal domain is the part of the CAMSAP proteins that binds to microtubules. The domain appears to act by producing inhibition of neurite extension, probably by blocking microtubule function. CKK represents a domain that has evolved with the metazoa []. The structure of a murine hypothetical protein from RIKEN cDNA has shown the domain to adopt a mainly beta barrel structure with an associated alpha-helical hairpin. ; PDB: 1UGJ_A.
Probab=18.30 E-value=2.9e+02 Score=24.87 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=40.7
Q ss_pred EecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCeeEEEEe
Q 015281 265 IKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEM 326 (410)
Q Consensus 265 IKS~nedNIhkSikygVWaTTp~nnkKLn~AFkea~e~~~~~~V~LfFSVN~Sg~FqG~AeM 326 (410)
.|| |..-|+.|+++-+-+ .+.|++..+.+.++. +++...+++++|. ...-+|-|+=.+
T Consensus 10 ~kS-Nr~iI~nAL~~~~La-G~vN~~~r~~~l~~~-~~s~~~hflILfr-d~~~~fRglY~~ 67 (123)
T PF08683_consen 10 AKS-NRRIIHNALSHCCLA-GPVNEKQRNKALEEM-SKSEANHFLILFR-DAGCQFRGLYSY 67 (123)
T ss_dssp -----HHHHHHHHHHTTT--SSTTHHHHHHHHHHH-HHS--S-EEEEES-SSS-SEEEEEEE
T ss_pred CCC-hHHHHHHHHHHhcCC-CccCHHHHHHHHHHH-hhCCCCeEEEEEe-cCCCceEEEEEE
Confidence 455 688899999997765 677888888888865 4555568888899 778999999888
No 9
>PF10539 Dev_Cell_Death: Development and cell death domain; InterPro: IPR013989 The DCD (Development and Cell Death) domain is found in plant proteins involved in development and cell death. The DCD domain is an ~130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N terminus and a PAQV and a PLxE motif towards the C terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognizable motifs, like the KELCH repeats or the ParB domain []. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone. The predicted secondary structure of the DCD domain is mostly composed of beta strands and confined by an alpha-helix at the N- and at the C terminus []. Proteins known to contain a DCD domain are listed below: Carrot B2 protein. Pea Gda-1 protein. Soybean N-rich protein (NRP).
Probab=16.20 E-value=2.8e+02 Score=25.39 Aligned_cols=115 Identities=13% Similarity=0.235 Sum_probs=76.1
Q ss_pred ChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCeeEEEEeeCCCCCCCCcccccccc-----
Q 015281 269 SEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDK----- 343 (410)
Q Consensus 269 nedNIhkSikygVWaTTp~nnkKLn~AFkea~e~~~~~~V~LfFSVN~Sg~FqG~AeM~Spvdf~k~~~~Wqqdk----- 343 (410)
|.+-+....++.+........ + |- +....+-++|||= -...+..|+=|-+|.-..+....-|..+.
T Consensus 9 n~~T~~ECf~~~lFGLP~~~~---~--~V--~~I~pG~~LFLfn--~~~r~L~GifeA~S~G~~ni~p~Af~~~~~~~~~ 79 (130)
T PF10539_consen 9 NNKTKPECFRRQLFGLPAGHK---D--FV--KKIKPGMPLFLFN--YSDRKLYGIFEATSDGGMNIEPYAFSGSGSGESP 79 (130)
T ss_pred CCCCHHHHHhcccccCChhhh---h--HH--heeCCCCEEEEEE--cCCCEEEEEEEecCCCccCcChhhhCCCCCCCcc
Confidence 445567778888887775422 1 11 1223445666652 36899999999999877777777787632
Q ss_pred cc--cccceeEEEeecCCCCCccccccCCCCCCCcccCCCCcccChHHHHHHHHHH
Q 015281 344 WV--GCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVCPFLFLSLIFIL 397 (410)
Q Consensus 344 w~--G~F~VkWl~vkdVPf~~lkHI~N~~NeNKPVt~SRDgQEI~~e~G~qLLkIF 397 (410)
+. =.|.|.| ....||=+.++|++-++=..+ .+=-.|+...+-..||.||
T Consensus 80 fPAQVrf~i~~-~C~PL~E~~fk~aI~~Ny~~~----~kF~~eLs~~Qv~~L~~LF 130 (130)
T PF10539_consen 80 FPAQVRFRIRW-DCPPLPESQFKPAIKDNYYDK----NKFRFELSHQQVRKLLSLF 130 (130)
T ss_pred cceEEEEEEee-eeecCCHHHHHHHHHHhCCCC----CcccCcCCHHHHHHHHHhC
Confidence 22 2566767 556788888999884421111 1446899999999999986
No 10
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=10.87 E-value=2.4e+02 Score=23.78 Aligned_cols=31 Identities=32% Similarity=0.454 Sum_probs=25.1
Q ss_pred EecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHH
Q 015281 265 IKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAK 300 (410)
Q Consensus 265 IKS~nedNIhkSikygVWaTTp~nnkKLn~AFkea~ 300 (410)
|+-+++++|+..++..- ..++.|-+||+.|.
T Consensus 61 l~pl~~~~~~~~l~~~~-----~k~k~l~~ay~~A~ 91 (93)
T cd05840 61 LKPLTEEKIAKFLKKPK-----RKDKELIKAYKAAK 91 (93)
T ss_pred cccCCHHHHHHHhhcCC-----CCCHHHHHHHHHhc
Confidence 67788999999888543 56699999999984
Done!