Query 015281
Match_columns 410
No_of_seqs 182 out of 355
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 09:51:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015281.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015281hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yu6_A YTH domain-containing p 100.0 6.9E-55 2.4E-59 385.3 10.8 137 256-399 4-140 (141)
2 2yud_A YTH domain-containing p 100.0 8.1E-55 2.8E-59 398.6 8.5 155 240-402 8-168 (180)
3 2hd9_A UPF0310 protein PH1033; 96.7 0.0052 1.8E-07 54.0 8.2 125 261-397 2-144 (145)
4 2p5d_A UPF0310 protein mjecl36 96.5 0.005 1.7E-07 54.2 6.6 124 260-395 4-146 (147)
5 2eve_A Hypothetical protein ps 50.7 43 0.0015 30.2 7.2 128 261-397 2-149 (157)
6 3eop_A Thymocyte nuclear prote 32.5 98 0.0033 28.4 6.7 132 261-398 2-168 (176)
7 2ar1_A Hypothetical protein; s 28.9 2.4E+02 0.0082 25.6 8.6 132 258-397 17-166 (172)
8 3goe_A DNA repair protein RAD6 21.3 84 0.0029 25.7 3.6 46 262-313 11-56 (82)
9 2jvf_A De novo protein M7; tet 14.6 18 0.00061 29.4 -1.7 14 375-388 9-22 (96)
10 2gbs_A Hypothetical protein RP 13.4 2.3E+02 0.0078 25.0 4.8 124 261-397 2-135 (145)
No 1
>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=6.9e-55 Score=385.30 Aligned_cols=137 Identities=29% Similarity=0.495 Sum_probs=131.8
Q ss_pred CCCCceEEEEecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCeeEEEEeeCCCCCCCC
Q 015281 256 SYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKT 335 (410)
Q Consensus 256 ~~~~aRFFIIKS~nedNIhkSikygVWaTTp~nnkKLn~AFkea~e~~~~~~V~LfFSVN~Sg~FqG~AeM~Spvdf~k~ 335 (410)
...++|||||||++++|||+|++||||+||++||++|++||+++ .+||||||||+||+|||||+|++++|+ ..
T Consensus 4 ~~~~~rfFIiKS~s~~ni~~S~k~gvW~tt~~~~~~L~~Af~~~------~~V~L~FSvn~Sg~F~G~A~M~s~~~~-~~ 76 (141)
T 2yu6_A 4 GSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWES------SIVYLVFSVQGSGHFQGFSRMSSEIGR-EK 76 (141)
T ss_dssp CCCCCEEEEEEESSSHHHHHHHHTCEEECCTTSHHHHHHHHHHS------SCEEEEEEESSSSEECEEEEECSCSSS-CC
T ss_pred CCCCcEEEEEEeCCHHHHHHHHHcCEeeccCccHHHHHHHHhcC------CcEEEEEEECCCCeEEEEEEEcccCCC-CC
Confidence 35799999999999999999999999999999999999999998 499999999999999999999999999 55
Q ss_pred cccccccccccccceeEEEeecCCCCCccccccCCCCCCCcccCCCCcccChHHHHHHHHHHHh
Q 015281 336 VEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVCPFLFLSLIFILLL 399 (410)
Q Consensus 336 ~~~Wqqdkw~G~F~VkWl~vkdVPf~~lkHI~N~~NeNKPVt~SRDgQEI~~e~G~qLLkIF~~ 399 (410)
..+|++++|+|.|+|+||+++||||..++||+|++||||||+++||||||++++|++||+||++
T Consensus 77 ~~~W~~~~~~g~F~V~Wi~~~~vpf~~~~hl~n~~N~nk~V~~~RDgqEi~~~~G~~l~~if~~ 140 (141)
T 2yu6_A 77 SQDWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWER 140 (141)
T ss_dssp CCCCSCSCCCCEEEEEEEECSCEEHHHHTSCEETTSTTEETTCCCTTEEECTTHHHHHHGGGGT
T ss_pred CccccccccCCcEEEEEEEeecCChHHhhhcccccCCCCeEEeCCCCEEcCHHHHHHHHHHHhh
Confidence 6679999999999999999999999999999999999999999999999999999999999985
No 2
>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=8.1e-55 Score=398.61 Aligned_cols=155 Identities=29% Similarity=0.429 Sum_probs=145.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeCCCCC
Q 015281 240 PLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQ 319 (410)
Q Consensus 240 ~~~~~~~qyN~~df~~~~~~aRFFIIKS~nedNIhkSikygVWaTTp~nnkKLn~AFkea~e~~~~~~V~LfFSVN~Sg~ 319 (410)
...+++++||+.+++. +++|||||||++++|||+|++||||+||++||++|++||+++ .+||||||||+||+
T Consensus 8 ~~~~~~~~~~~~~~~~--~~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~Af~~~------~~V~L~FSVn~Sg~ 79 (180)
T 2yud_A 8 VRAVRKDQTSKLKYVL--QDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSA------RSVILIFSVRESGK 79 (180)
T ss_dssp CCCCCCCSSHHHHHHT--TTCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHHHHHS------SCEEEEEEETTTSE
T ss_pred hhhcchhhcccccccc--CceEEEEEEeCCHHHHHHHHHcCEeecccccHHHHHHHHhhC------CeEEEEEEeCCCCc
Confidence 3445789999988875 799999999999999999999999999999999999999998 48999999999999
Q ss_pred eeEEEEeeCCCCCCCCccccc------ccccccccceeEEEeecCCCCCccccccCCCCCCCcccCCCCcccChHHHHHH
Q 015281 320 FVGVAEMVGPVDFDKTVEYWQ------QDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVCPFLFLSL 393 (410)
Q Consensus 320 FqG~AeM~Spvdf~k~~~~Wq------qdkw~G~F~VkWl~vkdVPf~~lkHI~N~~NeNKPVt~SRDgQEI~~e~G~qL 393 (410)
|||||+|+++++++....+|+ +++|+|.|+|+||+++||||..++||+|++||||||+++||||||++++|++|
T Consensus 80 F~G~A~M~s~~~~~~~~~~W~~~~~~~~~~~~g~F~V~Wi~~~dvPf~~~~hl~n~~NenkpV~~sRDgqEI~~~~G~~L 159 (180)
T 2yud_A 80 FQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQL 159 (180)
T ss_dssp EEEEEEEEEEEECSSCCCCCCCCSSCCGGGGCSEEEEEEEECSCEEHHHHTTCCBTTTTSBCTTSCCTTEEECHHHHHHH
T ss_pred EEEEEEEccCCCCCCCCccccccCccchhhcCCceEEEEEEeecCCchhhhhccccccCCCeeeeCCCCEEcCHHHHHHH
Confidence 999999999999988888896 46799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccc
Q 015281 394 IFILLLLCF 402 (410)
Q Consensus 394 LkIF~~~~~ 402 (410)
|+||..+..
T Consensus 160 ~~lf~~~~~ 168 (180)
T 2yud_A 160 CLLFPPDES 168 (180)
T ss_dssp HHHSCCCSS
T ss_pred HHhcccCcC
Confidence 999987654
No 3
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=96.68 E-value=0.0052 Score=53.95 Aligned_cols=125 Identities=13% Similarity=0.191 Sum_probs=81.0
Q ss_pred eEEEEecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeCCC--------CCeeEEEEeeCCCCC
Q 015281 261 KFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNAS--------GQFVGVAEMVGPVDF 332 (410)
Q Consensus 261 RFFIIKS~nedNIhkSikygVWaTTp~nnkKLn~AFkea~e~~~~~~V~LfFSVN~S--------g~FqG~AeM~Spvdf 332 (410)
+|.|+|| +.|++...++.|+|-. .+..+..-++ - .....+|||+-+.. ..|.|+|++++..-.
T Consensus 2 ~YWL~ks-s~d~~~~~~~~g~~GV-n~~arn~lr~---m----k~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~ 72 (145)
T 2hd9_A 2 TYWICIT-NRENWEVIKRHNVWGV-PKKHKNTLSR---V----KPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYV 72 (145)
T ss_dssp CEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHHTT---C----CTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEE
T ss_pred ceEEEeC-CHHHHHHHHHcCcccc-CHHHHHHHHh---C----CCCCEEEEEEccccccCCCCCCceEEEEEEEcCCcEe
Confidence 5899999 8999999999999977 5544422221 1 12367778887665 899999999986522
Q ss_pred CCCccccc-----ccccccccceeEEEeecCCCCCccccccCCCCC-----CCcccCCCCcccChHHHHHHHHHH
Q 015281 333 DKTVEYWQ-----QDKWVGCFPLKWLIIKDVPNSSLRHITLENNEN-----KPVTNSRDTQEVCPFLFLSLIFIL 397 (410)
Q Consensus 333 ~k~~~~Wq-----qdkw~G~F~VkWl~vkdVPf~~lkHI~N~~NeN-----KPVt~SRDgQEI~~e~G~qLLkIF 397 (410)
+.+ .+|. .+..--...|+++.+..||+..+.. .+++=.| .++ .-+--++|+.+....||+.+
T Consensus 73 D~t-~~~~~~~~~~~~~p~rv~v~~v~~~~i~~~~l~~-~l~fi~~k~~w~~~l-~r~gv~pV~~~d~~~I~~~m 144 (145)
T 2hd9_A 73 DFS-RIFKPHRGGKETYPYRVKIKPIKIGEINFKPLIN-DLKFIKNKKRWSMHF-FGKAMRELPEEDYKLIEKLL 144 (145)
T ss_dssp CCC-CCSCCTTSSCCCCCEEEEEEEEEEEEEESGGGGG-GCTTCCCSTTGGGGT-TTCSEEEECHHHHHHHHHHC
T ss_pred CCC-ccCCCcccccCCeeEEEeCEEEeeccCcHHHHHh-hhhhhccccccccee-cccCceEcCHHHHHHHHHhh
Confidence 221 1222 2222224568899899999877665 3333222 112 12338999999999988753
No 4
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=96.45 E-value=0.005 Score=54.17 Aligned_cols=124 Identities=14% Similarity=0.136 Sum_probs=77.5
Q ss_pred ceEEEEecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeC------CCCCeeEEEEeeCCCC--
Q 015281 260 AKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVN------ASGQFVGVAEMVGPVD-- 331 (410)
Q Consensus 260 aRFFIIKS~nedNIhkSikygVWaTTp~nnkKLn~AFkea~e~~~~~~V~LfFSVN------~Sg~FqG~AeM~Spvd-- 331 (410)
.+|.|+|+ +++++...++.|+|-. .+..+..-++ - .. ...+||+... .-..|.|+|++++..-
T Consensus 4 m~YWL~~s-e~~~~~~~~~~g~wGV-n~~arn~lr~---M---k~-GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y~D 74 (147)
T 2p5d_A 4 MAYWLCIT-NEDNWKVIKEKKIWGV-AERYKNTINK---V---KV-GDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYKD 74 (147)
T ss_dssp CCEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHHTT---C---CT-TCEEEEEECCBCSTTCBCCEEEEEEEECSCCEEC
T ss_pred ccceeeec-CHHHHHHHHHcCeeec-CHHHHHHHHh---C---CC-CCEEEEEEecccCCCCCCCEEEEEEEEecccccC
Confidence 47999999 6888999999999977 4443322221 1 12 3566666332 3468999999998542
Q ss_pred ---CCCCcccccccccccccceeEEEe--ecCCCCCcc----ccccC--CCCCCCcccCCCCcccChHHHHHHHH
Q 015281 332 ---FDKTVEYWQQDKWVGCFPLKWLII--KDVPNSSLR----HITLE--NNENKPVTNSRDTQEVCPFLFLSLIF 395 (410)
Q Consensus 332 ---f~k~~~~Wqqdkw~G~F~VkWl~v--kdVPf~~lk----HI~N~--~NeNKPVt~SRDgQEI~~e~G~qLLk 395 (410)
|+....|...+..--..+|+++.. ..||+..++ +|++. |.+ .-|..+ -++|+.+.-..||+
T Consensus 75 ~t~~dp~~~y~~~~~~w~~VdV~~v~~~~~~v~L~~Lk~~L~fi~~~~~~~~-~L~r~g--v~pV~~~~~~~I~~ 146 (147)
T 2p5d_A 75 SSKIFKPTPRNPNEKFPYRVKLKEIKVFEPPINFKELIPKLKFITNKKRWSG-HLMGKA--MREIPEEDYKLIVG 146 (147)
T ss_dssp CCCCSCCBTTBTTCCCCEEEEEEEEEEEEEEEEHHHHGGGCTTCCCSSSCCC---CCCS--EEEECHHHHHHHHT
T ss_pred CcccCcCccCcCCCCCceEEEEEEEeecCCccCHHHHHhhhhhcccchhhHH-HHhcCC--ceECCHHHHHHHHh
Confidence 222222221222223788999988 888877776 12122 222 224555 89999998888875
No 5
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=50.70 E-value=43 Score=30.17 Aligned_cols=128 Identities=14% Similarity=0.336 Sum_probs=74.1
Q ss_pred eEEEEec----CChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeC-CCCCeeEEEEeeCCC-----
Q 015281 261 KFFIIKS----YSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVN-ASGQFVGVAEMVGPV----- 330 (410)
Q Consensus 261 RFFIIKS----~nedNIhkSikygVWaTTp~nnkKLn~AFkea~e~~~~~~V~LfFSVN-~Sg~FqG~AeM~Spv----- 330 (410)
+|.++|| ++.+|+.. .....|.-.++-..+ -|-.+. .-+ ...||+.-| ....+.|+|+++...
T Consensus 2 ~YWL~KsEP~~~Siddl~~-~~~~~WdGVRNyqAr---N~mr~M--k~G-D~~ffYHS~c~~pgIvGi~eVv~e~ypD~t 74 (157)
T 2eve_A 2 AYWLMKSEPDEFSISDLQR-LGKARWDGVRNYQAR---NFLRTM--AEG-DEFFFYHSSCPEPGIAGIGKIVKTAYPDPT 74 (157)
T ss_dssp CEEEEEECTTTSCHHHHHH-HSEEEECCCCCHHHH---HHHHHC--CTT-CEEEEEECSSSSCEEEEEEEEEEEEEECGG
T ss_pred ceeeEecCCCeeeHHHHhc-CCcEecCCcccHHHH---HHHHhc--CCC-CEEEEEecCCCCCEEEEEEEEeEccCCCcc
Confidence 4788886 56788877 555789755542221 111121 123 455556555 889999999999743
Q ss_pred CCCCCcccccc------cccccccceeEEEe--ecCCCCCccccccCCCCCCCccc-CC-CCcccChHHHHHHHHHH
Q 015281 331 DFDKTVEYWQQ------DKWVGCFPLKWLII--KDVPNSSLRHITLENNENKPVTN-SR-DTQEVCPFLFLSLIFIL 397 (410)
Q Consensus 331 df~k~~~~Wqq------dkw~G~F~VkWl~v--kdVPf~~lkHI~N~~NeNKPVt~-SR-DgQEI~~e~G~qLLkIF 397 (410)
.|+....||.. -+|. .+.|+-+.. +-|+...++... ++.+..-|.. +| --|.|..++-..||+|=
T Consensus 75 ~fdp~s~YyDpks~~~~prw~-~VdV~~v~~~~~pv~L~elK~~~-~L~~m~Lv~~g~RLSV~PVt~~ew~~I~~l~ 149 (157)
T 2eve_A 75 ALDPDSHYHDAKATTEKNPWS-ALDIGFVDIFKNVLGLGYLKQQS-QLEQLPLVQKGSRLSVMPVTAEQWAAILALR 149 (157)
T ss_dssp GGCTTSTTCCTTCCSSCCCCE-EEEEEEEEEEEEEEEHHHHHTCG-GGTTCGGGSTTCCCSEEEECHHHHHHHHHHH
T ss_pred cccccCcCcCcccCCCCCCEE-EEEEEEeeecCCccCHHHHhcCc-ccccCceeeccCCcCceecCHHHHHHHHHHh
Confidence 35555566632 2343 445554443 445555555432 3444445555 23 45788888888888763
No 6
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=32.47 E-value=98 Score=28.38 Aligned_cols=132 Identities=16% Similarity=0.238 Sum_probs=78.4
Q ss_pred eEEEEec-------------CChhhHHHH-hhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCeeEEEEe
Q 015281 261 KFFIIKS-------------YSEDDVHKS-VKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEM 326 (410)
Q Consensus 261 RFFIIKS-------------~nedNIhkS-ikygVWaTTp~nnkKLn~AFkea~e~~~~~~V~LfFSVN~Sg~FqG~AeM 326 (410)
+|.++|| |+.||+... .+...|.=-++-..+-. .++- .-+..||+.-|....-.+.|+|++
T Consensus 2 ~yWLmKSEP~~r~e~g~dv~fSidDl~~~~~~~~~WdGVRNyqARN~--mR~M---k~GD~~fFYHSnck~pgIvGi~eV 76 (176)
T 3eop_A 2 SHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNF--LRAM---KLGEEAFFYHSNCKEPGIAGLMKI 76 (176)
T ss_dssp CEEEEEEBSSCCBSSSSBCBCCSHHHHTSGGGEEECCCCCCHHHHHH--HHHC---CTTCEEEEEECCSSSCEEEEEEEE
T ss_pred ceeeeeeCCCcccccCccceEeHHHHHhccCCCCcccCcccHHHHHH--HHhc---CCCCEEEEEecCCCCCeEEEEEEE
Confidence 5778886 566777665 34567886654322211 1222 123445554444478899999999
Q ss_pred eCCC-----CCCCCcccccc------cccccccceeEEEe--ecCCCCCccccc-------cCCCCCCCcccCC-CCccc
Q 015281 327 VGPV-----DFDKTVEYWQQ------DKWVGCFPLKWLII--KDVPNSSLRHIT-------LENNENKPVTNSR-DTQEV 385 (410)
Q Consensus 327 ~Spv-----df~k~~~~Wqq------dkw~G~F~VkWl~v--kdVPf~~lkHI~-------N~~NeNKPVt~SR-DgQEI 385 (410)
+... .|+...+|+.. .+|. .+.|+-+.. +-|+...++... -++-+..-|+.+| --|-|
T Consensus 77 v~e~ypD~T~fDp~s~YyDpkS~~~~prW~-~VdV~~v~~~~~~vtL~eLK~~~~~~~~~~~~L~~m~Lvr~~RLSV~PV 155 (176)
T 3eop_A 77 VKEAYPDHTQFEKNNPHYDPSSKEDNPKWS-MVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQPL 155 (176)
T ss_dssp EEEEEECGGGTCTTSTTCCTTCCTTSCSCE-EEEEEEEEEEEEEEEHHHHHHHHHHHHHHTCTTSSCHHHHCTTCSEEEE
T ss_pred eeccccCCcccCCCCCCCCccCcCCCCCEE-EEEEEEeeecCCcccHHHHhcCcccccccccccccCceeccCccCceec
Confidence 9743 35555666642 2564 466666554 346666666653 1454555566665 45778
Q ss_pred ChHHHHHHHHHHH
Q 015281 386 CPFLFLSLIFILL 398 (410)
Q Consensus 386 ~~e~G~qLLkIF~ 398 (410)
..+.-..||.+-+
T Consensus 156 t~~ew~~I~~l~~ 168 (176)
T 3eop_A 156 TQEEFDFVLSLEE 168 (176)
T ss_dssp CHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHh
Confidence 8888888887644
No 7
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=28.90 E-value=2.4e+02 Score=25.63 Aligned_cols=132 Identities=23% Similarity=0.336 Sum_probs=74.7
Q ss_pred CCceEEEEec----CChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCeeEEEEeeCCC---
Q 015281 258 SDAKFFIIKS----YSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPV--- 330 (410)
Q Consensus 258 ~~aRFFIIKS----~nedNIhkSikygVWaTTp~nnkKLn~AFkea~e~~~~~~V~LfFSVN~Sg~FqG~AeM~Spv--- 330 (410)
..-.|.++|| ++.+|+.. -....|.-.++-..+- -.++. .-+..||+.-|-.....+.|+|+++...
T Consensus 17 ~~M~YWL~KSEP~~~Siddl~~-~~~~~WdGVRNyqARN--~mr~M---k~GD~vfFYHS~c~~pgIvGi~eVv~e~ypD 90 (172)
T 2ar1_A 17 EDIHYWLLKSEPHKFSIDDLAK-QKTSPWDGVRNYAARN--NMRAM---SVGDKVLFYHSNTKEPGVAGLAEVVRLAYDD 90 (172)
T ss_dssp TSCCEEEEEECTTTSCHHHHHH-HSEEECCCCCCHHHHH--HHHHC---CTTCEEEEEECSSSSCEEEEEEEEEEEEEEC
T ss_pred CccceEEEEcCCCccCHHHHHh-cCceeccCcCcHHHHH--HHHhc---CCCCEEEEEecCCCCCEEEEEEEEeeeccCC
Confidence 3457999997 56777877 4446797655432211 11222 1233454444443889999999999743
Q ss_pred --CCCCCcccccc------cccccccceeEEEe--ecCCCCCccccccCCCCCCCcccCC-CCcccChHHHHHHHHHH
Q 015281 331 --DFDKTVEYWQQ------DKWVGCFPLKWLII--KDVPNSSLRHITLENNENKPVTNSR-DTQEVCPFLFLSLIFIL 397 (410)
Q Consensus 331 --df~k~~~~Wqq------dkw~G~F~VkWl~v--kdVPf~~lkHI~N~~NeNKPVt~SR-DgQEI~~e~G~qLLkIF 397 (410)
.|+....||.. -+|. .+.|+-+.. .-|+...++... ++.+..-|..+| --|-|..++-..||++-
T Consensus 91 ~t~fdp~s~YyDpks~~~~prw~-~VdV~~v~~~~~pvtL~eLK~~~-~L~~m~Lvr~~RLSV~PVt~~ew~~I~~l~ 166 (172)
T 2ar1_A 91 FTALDKTSEYFDPKATKEKNPWK-MVDVKFVARWDTVLTLHELKSRR-ELQKMALFTQRRLSVQPVSASEYAYILRMN 166 (172)
T ss_dssp GGGGCTTSTTCCTTCCSSCCCCE-EEEEEEEEEEEEEEEHHHHTTCG-GGTTCHHHHCSSCSEEEECHHHHHHHHHHH
T ss_pred cccccccCcccCcccCCCCCCeE-EEEEEEeeecCCcccHHHHhcCc-ccccCeeeeccCCCceecCHHHHHHHHHhh
Confidence 35555566642 1343 455555432 445555555432 233333444444 34778888888888765
No 8
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=21.31 E-value=84 Score=25.65 Aligned_cols=46 Identities=20% Similarity=0.168 Sum_probs=33.8
Q ss_pred EEEEecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEE
Q 015281 262 FFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFS 313 (410)
Q Consensus 262 FFIIKS~nedNIhkSikygVWaTTp~nnkKLn~AFkea~e~~~~~~V~LfFS 313 (410)
-.+++|.-.+|+..+|+- .....+|-+||++++..+....|.|.|-
T Consensus 11 ~~~~~~~~~~dl~f~I~~------~t~v~kLi~ayc~~~~I~~~~~IrllFD 56 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPV------DFTVKDLIKRYCTEVKISFHERIRLEFE 56 (82)
T ss_dssp EEEEEESSSCCEEEEEET------TSBHHHHHHHHHHHHTCCCCTTCEEEET
T ss_pred HHhhhccCCCCeEEEecC------CCCHHHHHHHHHHHcCCCcCceEEEEEc
Confidence 355666666777655553 3346899999999998887778999884
No 9
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=14.63 E-value=18 Score=29.40 Aligned_cols=14 Identities=29% Similarity=0.199 Sum_probs=11.1
Q ss_pred CcccCCCCcccChH
Q 015281 375 PVTNSRDTQEVCPF 388 (410)
Q Consensus 375 PVt~SRDgQEI~~e 388 (410)
.+++.||||||+.+
T Consensus 9 tikiqrdgqeieid 22 (96)
T 2jvf_A 9 TIKIQRDGQEIEID 22 (96)
T ss_dssp EEEEEETTEEEEEE
T ss_pred EEEEeeCCeEEEEE
Confidence 46788999998754
No 10
>2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural genomics, COG294 protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: b.122.1.8
Probab=13.41 E-value=2.3e+02 Score=25.04 Aligned_cols=124 Identities=19% Similarity=0.210 Sum_probs=65.6
Q ss_pred eEEEEec----CChhhHHHHhh-cCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCeeEEEEeeCCC--CCC
Q 015281 261 KFFIIKS----YSEDDVHKSVK-YNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPV--DFD 333 (410)
Q Consensus 261 RFFIIKS----~nedNIhkSik-ygVWaTTp~nnkKLn~AFkea~e~~~~~~V~LfFSVN~Sg~FqG~AeM~Spv--df~ 333 (410)
+|.++|| ++.||+...-. .-.|.--++-..+ .-.++. .-+ .-.||+.-|....+.|+|++++.. |..
T Consensus 2 ~YWL~KsEP~~~Siddl~~~~~~~~~WdGVRNyqAr--n~mr~M---k~G-D~~ffYHS~~~~gIvGi~eVv~e~ypD~t 75 (145)
T 2gbs_A 2 AYWLVKSEPSVWSWDQQVAKGAAGEAWTGVRNHSAK--LHMVAM---RRG-DRAFYYHSNEGKEIVGIAEIIREAYPDPT 75 (145)
T ss_dssp CEEEEEECTTTSCHHHHHTTTTTCEECCCCCCHHHH--HHHHHC---CTT-CEEEEEETTTTCEEEEEEEEEEEEEECTT
T ss_pred ceEEEEcCCCcCCHHHHHhcCcccceeCCcccHHHH--HHHHhc---CCC-CEEEEEEeCCCCceEEEEEEEEeccCCCC
Confidence 4888887 45577765332 2459755442211 111222 123 455566667899999999999865 543
Q ss_pred CCcccccccccccccceeEEEe--ecCCCCCccccccCCCCCCCcccCC-CCcccChHHHHHHHHHH
Q 015281 334 KTVEYWQQDKWVGCFPLKWLII--KDVPNSSLRHITLENNENKPVTNSR-DTQEVCPFLFLSLIFIL 397 (410)
Q Consensus 334 k~~~~Wqqdkw~G~F~VkWl~v--kdVPf~~lkHI~N~~NeNKPVt~SR-DgQEI~~e~G~qLLkIF 397 (410)
.... +|. .+.|+-+.. +-|+...++... ++.+..-|..+| --|-|..++-..||.+-
T Consensus 76 ~~~p-----rw~-~VdV~~v~~~~~pvtL~elK~~~-~L~~m~lvr~~RLSV~pVt~~ew~~I~~l~ 135 (145)
T 2gbs_A 76 DASG-----KFV-CVDIKADKPLKTPVTLAAVKAEP-RLADMALMKYSRLSVQPVTAEEWKLVCKMG 135 (145)
T ss_dssp CTTS-----CSE-EEEEEEEEEEEEEEEHHHHHHCT-TGGGSHHHHCTTCSSEEECHHHHHHHHHHT
T ss_pred CCCC-----CEE-EEEEEEceecCCcccHHHHhcCc-CcccCeeeeccCCCceeeCHHHHHHHHHhh
Confidence 3222 332 344554432 344444444321 222333344444 24667777777777653
Done!