BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015286
(410 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 506 bits (1302), Expect = e-143, Method: Compositional matrix adjust.
Identities = 240/377 (63%), Positives = 292/377 (77%), Gaps = 2/377 (0%)
Query: 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXX 91
+ Q Q ++++ +F +E++AP+A ID+SN F WK +GN + GITAP +
Sbjct: 13 LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 72
Query: 92 XXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GA
Sbjct: 73 GLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGA 132
Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKG 209
LAMSEPNAGSDVV MK KA++ YI+NGNK W TNGP A L+VYAKTD+ A S+G
Sbjct: 133 LAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRG 192
Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269
ITAFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C +P N+LG E KGVYV+MSGLD
Sbjct: 193 ITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLD 252
Query: 270 LERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVY 329
LERLVLA GPLG+MQA LD +PY+ RE FG+ +G FQ +QGK ADMYT L + R YVY
Sbjct: 253 LERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQYVY 312
Query: 330 SVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYE 389
+VA+ CD G KDCAGVIL +AE ATQV L IQC GGNGY+N++ GR LRDAKLYE
Sbjct: 313 NVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGNGYINDFPMGRFLRDAKLYE 372
Query: 390 IGAGTSEIRRMIIGRAL 406
IGAGTSE+RR++IGRA
Sbjct: 373 IGAGTSEVRRLVIGRAF 389
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 265 bits (676), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 144/380 (37%), Positives = 210/380 (55%), Gaps = 2/380 (0%)
Query: 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEX 88
S+ +T +++ FA + + P AA +D+ + FP + K MG L + P+E
Sbjct: 7 SVELPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFP--TSQVKKMGELGLLAMDVPEEL 64
Query: 89 XXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
+ IA+EEISR S G+ +++L + +++ GS QK +++ +G+
Sbjct: 65 SGAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDK 124
Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
+G A+SEP GSD A +++NG K W TN A VV+A TD +K
Sbjct: 125 IGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNK 184
Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGL 268
GI+AF++ PG + +K DKLG+R S T L+FE+C +P EN+LG+ G G + M L
Sbjct: 185 GISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTL 244
Query: 269 DLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYV 328
D+ R+ +A+ LGI QA LD + Y R FG PL + Q IQ K ADM AL+S+R
Sbjct: 245 DMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQNIQFKLADMALALESARLLT 304
Query: 329 YSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLY 388
+ A DN K K+ A L A+E AT ++ QAIQ LGG GYV E R RDA++
Sbjct: 305 WRAAMLKDNKKPFTKESAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERYYRDARIT 364
Query: 389 EIGAGTSEIRRMIIGRALLK 408
EI GTSEI+R++I LL+
Sbjct: 365 EIYEGTSEIQRLVIAGHLLR 384
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 256 bits (654), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 145/381 (38%), Positives = 209/381 (54%), Gaps = 4/381 (1%)
Query: 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEX 88
S+ +T ++ FA + + P AA +D+ + FP K MG L + P+E
Sbjct: 3 SVELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFP--AAQVKKMGGLGLLAMDVPEEL 60
Query: 89 XXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
+ IAMEEISR S G+ +++L + +++ GS QK ++ SG+
Sbjct: 61 GGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDK 120
Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDG-GYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS 207
+G A+SEP GSD G R +G +++NG K W TN A VV+A TD +
Sbjct: 121 IGCFALSEPGNGSDA-GAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQN 179
Query: 208 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG 267
K I+AF++ PG + +K DKLG+RGS T L+FE+C +P +++LG+ G G + M
Sbjct: 180 KSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQT 239
Query: 268 LDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSY 327
LD+ R+ +A+ LGI Q LD + Y R FG PL + Q IQ K ADM AL+S+R
Sbjct: 240 LDMGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLL 299
Query: 328 VYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKL 387
+ A DN K K+ A L A+E AT ++ QAIQ LGG GYV E R RDA++
Sbjct: 300 TWRAAMLKDNKKPFIKEAAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARI 359
Query: 388 YEIGAGTSEIRRMIIGRALLK 408
EI GTSEI+R++I LL+
Sbjct: 360 TEIYEGTSEIQRLVIAGHLLR 380
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
pdb|1BUC|B Chain B, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
Length = 383
Score = 251 bits (641), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 132/312 (42%), Positives = 195/312 (62%), Gaps = 1/312 (0%)
Query: 98 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 157
+ +A+EE+++ V ++ A +LC N + + G+ AQK+K+L L+ G +GA ++EP
Sbjct: 72 YILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEP 131
Query: 158 NAGSDVVGMKCKADRVDGG-YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIE 216
NAG+D G + A + D G Y +NG+K++ TNG A +V+A TD G+ GITAFI+E
Sbjct: 132 NAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHGITAFILE 191
Query: 217 KGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLA 276
G PGF+ +K DK+G+ S T ELVF++ VP EN+LG+EGKG + M LD R+ +A
Sbjct: 192 DGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVA 251
Query: 277 AGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCD 336
A LGI +A L + Y +QR QFG+PL +FQ I K ADM ++++R+ VY A
Sbjct: 252 AQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVYKAACKKQ 311
Query: 337 NGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSE 396
GK D A A++ A +VT +A+Q GG GY EY R +RDAK+ +I GT+E
Sbjct: 312 EGKPFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKITQIYEGTNE 371
Query: 397 IRRMIIGRALLK 408
++ M+ G ALL+
Sbjct: 372 VQLMVTGGALLR 383
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
pdb|2DVL|B Chain B, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
Length = 372
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/371 (38%), Positives = 210/371 (56%), Gaps = 13/371 (3%)
Query: 41 ESVGQFARENIAPRAANIDQSNSFPQDVNLW---KLMGNFNLHGITAPQEXXXXXXXXXX 97
++V + ARE + P A D+ +P W K + L G+T P+E
Sbjct: 12 DAVRRVAREVLYPLAPEYDRKAEYP-----WPQLKALAELGLLGMTTPEEWGGVGLDSVT 66
Query: 98 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 157
+A+EE++ A SV + S L L+R GS AQK +YL L GE +GA ++EP
Sbjct: 67 WALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEP 126
Query: 158 NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEK 217
AGSD ++ +A RV GG+++NG K W T+ A VV A+T+ KGI+AF++EK
Sbjct: 127 QAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMARTE-----KGISAFLVEK 181
Query: 218 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 277
G PG S + +K+G+ + T E+ E FVP EN+LG+EG+G+ ++GLD R+ +AA
Sbjct: 182 GTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSGRVGVAA 241
Query: 278 GPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN 337
+GI + ++ Y +REQFG+ L E Q I K ADM+ + ++R+ V AR D
Sbjct: 242 QAVGIARGAFEIAKAYAEEREQFGKKLKEHQAIAFKIADMHVKIAAARALVLEAARKKDR 301
Query: 338 GKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEI 397
G+ + + L A+ A +VT +A+Q LGG GY +Y R RDAK+ EI GTSEI
Sbjct: 302 GERFTLEASAAKLFASAAAVEVTREAVQVLGGYGYHRDYRVERYYRDAKVTEIYEGTSEI 361
Query: 398 RRMIIGRALLK 408
+R++I R L +
Sbjct: 362 QRLVIARELYR 372
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 236 bits (603), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 132/379 (34%), Positives = 208/379 (54%), Gaps = 10/379 (2%)
Query: 34 DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITA---PQEXXX 90
+ + +E++ A + IAP AA +D+ FP++ + N G +A P+E
Sbjct: 21 EEHIALREAIRALAEKEIAPYAAEVDEKARFPEEA-----LAALNSSGFSAIHVPEEYGG 75
Query: 91 XXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVG 150
CI +EE++R S L A + L L+ GS K + LP + SGE +
Sbjct: 76 QGADSVATCIVIEEVARVDCSASL-IPAVNKLGTMGLILRGSEELKKQVLPAVASGEAMA 134
Query: 151 ALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGI 210
+ A+SE AGSD M+ +A +I+NG+K W TNG + V A TD G+ GI
Sbjct: 135 SYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVMAVTDPDKGANGI 194
Query: 211 TAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDL 270
+AF++ K GF+ K KLG++GS T EL FENC +P + ++G+ G G ++ LD
Sbjct: 195 SAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDH 254
Query: 271 ERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYS 330
R + A +GI Q LD + Y ++R+QFGRP+ + Q +Q ADM ++++R VYS
Sbjct: 255 TRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEAARLMVYS 314
Query: 331 VARDCDNGKVDPKDCAGVILC-AAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYE 389
A + G+ D + C A++ A +VT A+Q GG GY ++ R++RDAK+ +
Sbjct: 315 AAARAERGEGDLGFISAASKCFASDVAMEVTTDAVQLFGGYGYTQDFPVERMMRDAKITQ 374
Query: 390 IGAGTSEIRRMIIGRALLK 408
I GT++I+R+++ RALL+
Sbjct: 375 IYEGTNQIQRVVMSRALLR 393
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|B Chain B, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|C Chain C, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|D Chain D, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
Length = 404
Score = 234 bits (596), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 134/378 (35%), Positives = 207/378 (54%), Gaps = 9/378 (2%)
Query: 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFN--LHGITAPQEXX 89
F D ++ K SV +FA+E IAP + +D+++ + V + G F L GI E
Sbjct: 29 FTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSV----IQGLFQQGLMGIEVDPEYG 84
Query: 90 XXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVR-HGSPAQKDKYLPKLISGEH 148
+ +EE+++ SV + + N IN L+R HG+ QK YLP+L + E
Sbjct: 85 GTGASFLSTVLVIEELAKVDASVAV-FCEIQNTLINTLIRKHGTEEQKATYLPQLTT-EK 142
Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
VG+ +SE AGSD +K +AD+ Y++NG+KMW ++ A +V A D G K
Sbjct: 143 VGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYK 202
Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGL 268
GIT+F++++ PG + +KLG+R S TC L FEN VP N+LGQ G G + L
Sbjct: 203 GITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSL 262
Query: 269 DLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYV 328
+ R+ +AA LG+ Q C D +PY+++R QFG+ L +FQ +Q + A + T L+++R
Sbjct: 263 NEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLT 322
Query: 329 YSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLY 388
Y+ AR + GK K+ + A+E A Q T + I+ +GG GY +Y + RDAK+
Sbjct: 323 YNAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIG 382
Query: 389 EIGAGTSEIRRMIIGRAL 406
I G S I+ I + +
Sbjct: 383 TIYEGASNIQLNTIAKHI 400
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 231 bits (588), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 134/377 (35%), Positives = 199/377 (52%), Gaps = 9/377 (2%)
Query: 34 DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGI---TAPQEXXX 90
+ Q Q + +FA+E I P A D+ P W ++ + G+ P+E
Sbjct: 7 EEQRQLQALARRFAKEVILPVAQEYDEKEEVP-----WPVIEKLHEVGLLNAIIPEEYGG 61
Query: 91 XXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVG 150
I EE++ A + + S+L I ++ G+ QK+++L L +
Sbjct: 62 MGLKMLDEVIVGEELAYACMGI-YTIPMASDLGITPVLLAGTEEQKERFLRPLTEKPALA 120
Query: 151 ALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGI 210
A A+SEP GSD +K +A R Y++NG KMW +NG A+ +VV+A + + KG+
Sbjct: 121 AFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRHKGV 180
Query: 211 TAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDL 270
A ++E+G PGF + K+G R S T ELVFE+ VP EN LG+EG+G + M L+
Sbjct: 181 VALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLNK 240
Query: 271 ERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYS 330
R+ +AAG +G+ + LD Y ++RE FG P+ FQ IQ K DM ++++R Y Y
Sbjct: 241 TRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFKLVDMLIGIETARMYTYY 300
Query: 331 VARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEI 390
A D G A A+E A + QAIQ GG GYV E+ +LLRD KL +I
Sbjct: 301 AAWLADQGLPHAHASAIAKAYASEIAFEAANQAIQIHGGYGYVREFPVEKLLRDVKLNQI 360
Query: 391 GAGTSEIRRMIIGRALL 407
GT+EI+R+II R +L
Sbjct: 361 YEGTNEIQRLIIARHIL 377
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 230 bits (587), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 139/368 (37%), Positives = 209/368 (56%), Gaps = 6/368 (1%)
Query: 45 QFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEE 104
+F + +AP AA D++ +FP D L + + F + G P+ +E
Sbjct: 20 EFLKAEVAPGAAERDRTGAFPWD--LVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEA 77
Query: 105 ISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVV 164
I+ G++ L+ +H++L ++ GS AQK+ +LPKL SGE +GA ++EP +GSD
Sbjct: 78 IAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAA 137
Query: 165 GMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS----KGITAFIIEKGMP 220
+K KA++V+GG+ +NG K + T G VA VV A+TD +GI+AF +
Sbjct: 138 ALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPER 197
Query: 221 GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPL 280
G +K +KLG+ SDT +L+ E+ FVP E +LG+ GKG Y ++ LD R+ +AA +
Sbjct: 198 GLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAV 257
Query: 281 GIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV 340
G+ QA LD L Y + RE FGRP+ EF+ + K A+ T L+++R A D G+
Sbjct: 258 GLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLKAAELKDAGRP 317
Query: 341 DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRM 400
+ A L A+E A + +AIQ LGG GYV +Y R RDA+L IG GTSEI ++
Sbjct: 318 FTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKL 377
Query: 401 IIGRALLK 408
+I R LL+
Sbjct: 378 VIARRLLE 385
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/368 (35%), Positives = 193/368 (52%), Gaps = 6/368 (1%)
Query: 39 FKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEX--XXXXXXXX 96
++ V F + I P A D N FP + + + MG G P+E
Sbjct: 12 LQKEVRNFVNKKIVPFADQWDNENHFPYEEAV-RPMGELGFFGTVIPEEYGGEGMDQGWL 70
Query: 97 XHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSE 156
I EEI+R S ++ + C ++ +GS A K KY+PKL S E +G ++E
Sbjct: 71 AAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITE 130
Query: 157 PNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIE 216
P+AGSDV+ M A+ +++NG+K W +N A L+ YA TD AGS+G++AF+IE
Sbjct: 131 PDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAYTDKAAGSRGLSAFVIE 190
Query: 217 -KGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVL 275
+ PG T+ L+KLG S T EL +N VP EN+LG+ G G ++ L+ RL
Sbjct: 191 PRNFPGIKTSN-LEKLGSHASPTGELFLDNVKVPKENILGKPGDGARIVFGSLNHTRLSA 249
Query: 276 AAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDC 335
AAG +G+ QACLD + Y +R QFG+P+G+FQ Q A M ++++R Y A
Sbjct: 250 AAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMNQDMIAQMAVEVEAARLLAYKAAAAK 309
Query: 336 DNGKVDPK-DCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGT 394
D G+++ D A A E ++ A++ LG GY EY R RDA Y + G+
Sbjct: 310 DEGRLNNGLDVAMAKYAAGEAVSKCANYAMRILGAYGYSTEYPVARFYRDAPTYYMVEGS 369
Query: 395 SEIRRMII 402
+ I +MII
Sbjct: 370 ANICKMII 377
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 214 bits (546), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 137/382 (35%), Positives = 199/382 (52%), Gaps = 12/382 (3%)
Query: 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDV--NLWKLMGNFNLHGITAPQ 86
S F + Q +F+ + +FARE I P AA D++ +P + W+L G N H P+
Sbjct: 13 SFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWEL-GLMNTH---IPE 68
Query: 87 EXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLIS 145
C+ EE+ A G G+ N L ++ G+ QK KYL ++
Sbjct: 69 NCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTE 126
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205
+ A ++EP AGSDV G+K KA++ YIING KMW TNG A + A++D
Sbjct: 127 EPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDP 186
Query: 206 ---GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVY 262
+K T FI+E PG +K +G R SDT +VFE+ VP ENVL +G G
Sbjct: 187 KAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFK 246
Query: 263 VMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQ 322
V M D ER V+AAG +G+ Q LD Y +R+ FG+ L E Q I A+M ++
Sbjct: 247 VAMGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVE 306
Query: 323 SSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLL 382
+R A + D+G+ + + A + A Q+ A+Q LGGNG+ EY +L+
Sbjct: 307 LARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLM 366
Query: 383 RDAKLYEIGAGTSEIRRMIIGR 404
RDAK+Y+I GTS+I+R+I+ R
Sbjct: 367 RDAKIYQIYGGTSQIQRLIVAR 388
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 212 bits (540), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 195/383 (50%), Gaps = 8/383 (2%)
Query: 26 SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAP 85
S S + Q +F+ + +FARE I P AA D++ +P V L K L P
Sbjct: 10 SGFSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYP--VPLLKRAWELGLMNTHIP 67
Query: 86 QEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLI 144
+ C+ EE+ A G G+ +N L L+ G+ Q+ KYL ++
Sbjct: 68 ESFGGLGLGIIDSCLITEEL--AYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMT 125
Query: 145 SGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK 204
+ A ++EP AGSDV G+K KA++ YIING KMW TNG A + A++D
Sbjct: 126 EEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPD 185
Query: 205 A---GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGV 261
SK T FI+E PG +K +G R SDT +VFE+ VP ENVL EG G
Sbjct: 186 PKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGF 245
Query: 262 YVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTAL 321
+ M D R +AAG +G+ Q LD Y +R+ FG+ L E Q I ADM +
Sbjct: 246 KIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADMAMKV 305
Query: 322 QSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRL 381
+ +R A + D+G+ + + AA+ A Q+ A+Q GGNG+ EY +L
Sbjct: 306 ELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVEKL 365
Query: 382 LRDAKLYEIGAGTSEIRRMIIGR 404
+RDAK+Y+I GT++I+R+II R
Sbjct: 366 MRDAKIYQIYEGTAQIQRIIIAR 388
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 136/382 (35%), Positives = 198/382 (51%), Gaps = 12/382 (3%)
Query: 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDV--NLWKLMGNFNLHGITAPQ 86
S F + Q +F+ + +FARE I P AA D++ +P + W+L G N H P+
Sbjct: 38 SFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWEL-GLMNTH---IPE 93
Query: 87 EXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLIS 145
C+ EE+ A G G+ N L ++ G+ QK KYL ++
Sbjct: 94 NCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTE 151
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205
+ A ++EP AGSDV G+K KA++ YIING KMW TNG A + A++D
Sbjct: 152 EPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDP 211
Query: 206 ---GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVY 262
+K T FI+E PG +K +G R SDT +VFE+ VP ENVL +G G
Sbjct: 212 KAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFK 271
Query: 263 VMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQ 322
V M D R V+AAG +G+ Q LD Y +R+ FG+ L E Q I A+M ++
Sbjct: 272 VAMGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVE 331
Query: 323 SSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLL 382
+R A + D+G+ + + A + A Q+ A+Q LGGNG+ EY +L+
Sbjct: 332 LARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLM 391
Query: 383 RDAKLYEIGAGTSEIRRMIIGR 404
RDAK+Y+I GTS+I+R+I+ R
Sbjct: 392 RDAKIYQIYEGTSQIQRLIVAR 413
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 136/382 (35%), Positives = 198/382 (51%), Gaps = 12/382 (3%)
Query: 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDV--NLWKLMGNFNLHGITAPQ 86
S F + Q +F+ + +FARE I P AA D++ +P + W+L G N H P+
Sbjct: 13 SFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWEL-GLMNTH---IPE 68
Query: 87 EXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLIS 145
C+ EE+ A G G+ N L ++ G+ QK KYL ++
Sbjct: 69 NCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTE 126
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205
+ A ++EP AGSDV G+K KA++ YIING KMW TNG A + A++D
Sbjct: 127 EPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDP 186
Query: 206 ---GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVY 262
+K T FI+E PG +K +G R SDT +VFE+ VP ENVL +G G
Sbjct: 187 KAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFK 246
Query: 263 VMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQ 322
V M D R V+AAG +G+ Q LD Y +R+ FG+ L E Q I A+M ++
Sbjct: 247 VAMGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVE 306
Query: 323 SSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLL 382
+R A + D+G+ + + A + A Q+ A+Q LGGNG+ EY +L+
Sbjct: 307 LARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLM 366
Query: 383 RDAKLYEIGAGTSEIRRMIIGR 404
RDAK+Y+I GTS+I+R+I+ R
Sbjct: 367 RDAKIYQIYEGTSQIQRLIVAR 388
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 211 bits (538), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 135/380 (35%), Positives = 194/380 (51%), Gaps = 8/380 (2%)
Query: 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEX 88
S + Q +F+ + +FARE I P AA D++ +P V L K L P+
Sbjct: 3 SFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYP--VPLLKRAWELGLMNTHIPESF 60
Query: 89 XXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGE 147
C+ EE+ A G G+ +N L L+ G+ Q+ KYL ++
Sbjct: 61 GGLGLGIIDSCLITEEL--AYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMTEEP 118
Query: 148 HVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA-- 205
+ A ++EP AGSDV G+K KA++ YIING KMW TNG A + A++D
Sbjct: 119 LMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKA 178
Query: 206 -GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVM 264
SK T FI+E PG +K +G R SDT +VFE+ VP ENVL EG G +
Sbjct: 179 PASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGFKIA 238
Query: 265 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSS 324
M D R +AAG +G+ Q LD Y +R+ FG+ L E Q I ADM ++ +
Sbjct: 239 MGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADMAMKVELA 298
Query: 325 RSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD 384
R A + D+G+ + + AA+ A Q+ A+Q GGNG+ EY +L+RD
Sbjct: 299 RLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVEKLMRD 358
Query: 385 AKLYEIGAGTSEIRRMIIGR 404
AK+Y+I GT++I+R+II R
Sbjct: 359 AKIYQIYEGTAQIQRIIIAR 378
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
pdb|2PG0|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
Length = 385
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 196/383 (51%), Gaps = 9/383 (2%)
Query: 28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAP-- 85
T+ + F+ + +F + P + ++ P+ + W MG +G P
Sbjct: 6 TARYLREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPR--SFWAKMGE---NGFLCPWV 60
Query: 86 QEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLIS 145
E + + + E GS + G H+++ + +G+ QK K+LPK ++
Sbjct: 61 DEKYGGLNADFAYSVVINEELEKVGSSLVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVT 120
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205
GE + A+AM+EP AGSD+ + A + YI+NG K + TNG A +VV KTD +A
Sbjct: 121 GELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIHADLIVVACKTDPQA 180
Query: 206 G--SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYV 263
+GI+ ++E+ PGF+ +KL+K+G+ DT EL F++ VP N+LG+EGKG Y
Sbjct: 181 KPPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYY 240
Query: 264 MMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQS 323
+M L ERLV+A + + YV+QR FG+ + EFQ +Q + A+M T +
Sbjct: 241 LMEKLQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKRVSEFQTVQFRLAEMATEIAL 300
Query: 324 SRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLR 383
R++V V + GK + + E A +V +A+Q GG GY+ EY R R
Sbjct: 301 GRTFVDRVIEEHMAGKQIVTEVSMAKWWITEMAKRVAAEAMQLHGGYGYMEEYEIARRYR 360
Query: 384 DAKLYEIGAGTSEIRRMIIGRAL 406
D + I AGT+E+ + II R L
Sbjct: 361 DIPVSAIYAGTNEMMKTIIARQL 383
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 126/394 (31%), Positives = 195/394 (49%), Gaps = 22/394 (5%)
Query: 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXX 91
FD++ + + F + P ++ +V L + G L I P+E
Sbjct: 28 FDESVKEIARTTRTFVEREVLPLLERMEHGE-LELNVPLMRKAGELGLLAIDVPEEYGGL 86
Query: 92 XXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
+ EE+S SG ++YGAH+++ LV G+ QK KYLPKL SGE + A
Sbjct: 87 DLPKVISTVVAEELS-GSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAA 145
Query: 152 LAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG 209
++EP +GSD + K +A + G YI+NG K W +N A V+AK D +
Sbjct: 146 YCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAKVD----GEH 201
Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269
TAF++E+ PG S + K+G++ S T +++ E+ VP ENVLG+ GKG + + L+
Sbjct: 202 FTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLN 261
Query: 270 LERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVY 329
+ R L AG +G + L++ Y QR QFGRP+G F IQ K +M + + ++ S VY
Sbjct: 262 VGRYKLGAGAVGGAKRALELSAQYATQRVQFGRPIGRFGLIQQKLGEMASRIYAAESAVY 321
Query: 330 SVARDCDNGKVDPKDCAGVILCAAERATQVTL--------------QAIQCLGGNGYVNE 375
D + K V+ E A + ++ + +Q GG GY E
Sbjct: 322 RTVGLIDEALLGKKGPEAVMAGIEEYAVEASIIKVLGSEVLDYVVDEGVQIHGGYGYSQE 381
Query: 376 YATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 409
Y R RDA++ I GT+EI R++I LL++
Sbjct: 382 YPIERAYRDARINRIFEGTNEINRLLIPGMLLRR 415
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 202 bits (513), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 129/389 (33%), Positives = 192/389 (49%), Gaps = 9/389 (2%)
Query: 22 SAAFSSTSLLFDDTQL-----QFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGN 76
+A F L D QL +++ +A+ +APR + + D +++ MG
Sbjct: 7 AATFHWDDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHET--TDAAIFREMGE 64
Query: 77 FNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQK 136
L G T P++ + + E+ R S+L + + GS AQK
Sbjct: 65 IGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQK 124
Query: 137 DKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLV 196
+KYLPKL +GE +G ++EPN GSD M +A +V GGY ++G+KMW TN P+A V
Sbjct: 125 EKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFV 184
Query: 197 VYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ 256
V+AK D + G I FI+EKG G S K+G+R S T E+V + FVP EN+L
Sbjct: 185 VWAKLD-EDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPH 243
Query: 257 EGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTAD 316
KG+ + L+ R +A G LG ++C + YV R+QFGRPL Q IQ K AD
Sbjct: 244 V-KGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLAD 302
Query: 317 MYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEY 376
M T + V + R D G + + + + +A + A LGGNG +E+
Sbjct: 303 MQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEF 362
Query: 377 ATGRLLRDAKLYEIGAGTSEIRRMIIGRA 405
R L + ++ GT +I +I+GRA
Sbjct: 363 GVARHLVNLEVVNTYEGTHDIHALILGRA 391
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 201 bits (512), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 129/389 (33%), Positives = 192/389 (49%), Gaps = 9/389 (2%)
Query: 22 SAAFSSTSLLFDDTQL-----QFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGN 76
+A F L D QL +++ +A+ +APR + + D +++ MG
Sbjct: 3 AATFHWDDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHET--TDAAIFREMGE 60
Query: 77 FNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQK 136
L G T P++ + + E+ R S+L + + GS AQK
Sbjct: 61 IGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQK 120
Query: 137 DKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLV 196
+KYLPKL +GE +G ++EPN GSD M +A +V GGY ++G+KMW TN P+A V
Sbjct: 121 EKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFV 180
Query: 197 VYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ 256
V+AK D + G I FI+EKG G S K+G+R S T E+V + FVP EN+L
Sbjct: 181 VWAKLD-EDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPH 239
Query: 257 EGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTAD 316
KG+ + L+ R +A G LG ++C + YV R+QFGRPL Q IQ K AD
Sbjct: 240 V-KGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLAD 298
Query: 317 MYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEY 376
M T + V + R D G + + + + +A + A LGGNG +E+
Sbjct: 299 MQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEF 358
Query: 377 ATGRLLRDAKLYEIGAGTSEIRRMIIGRA 405
R L + ++ GT +I +I+GRA
Sbjct: 359 GVARHLVNLEVVNTYEGTHDIHALILGRA 387
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 201 bits (512), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 129/389 (33%), Positives = 192/389 (49%), Gaps = 9/389 (2%)
Query: 22 SAAFSSTSLLFDDTQL-----QFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGN 76
+A F L D QL +++ +A+ +APR + + D +++ MG
Sbjct: 4 AATFHWDDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHET--TDAAIFREMGE 61
Query: 77 FNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQK 136
L G T P++ + + E+ R S+L + + GS AQK
Sbjct: 62 IGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQK 121
Query: 137 DKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLV 196
+KYLPKL +GE +G ++EPN GSD M +A +V GGY ++G+KMW TN P+A V
Sbjct: 122 EKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFV 181
Query: 197 VYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ 256
V+AK D + G I FI+EKG G S K+G+R S T E+V + FVP EN+L
Sbjct: 182 VWAKLD-EDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPH 240
Query: 257 EGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTAD 316
KG+ + L+ R +A G LG ++C + YV R+QFGRPL Q IQ K AD
Sbjct: 241 V-KGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLAD 299
Query: 317 MYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEY 376
M T + V + R D G + + + + +A + A LGGNG +E+
Sbjct: 300 MQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEF 359
Query: 377 ATGRLLRDAKLYEIGAGTSEIRRMIIGRA 405
R L + ++ GT +I +I+GRA
Sbjct: 360 GVARHLVNLEVVNTYEGTHDIHALILGRA 388
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/379 (31%), Positives = 202/379 (53%), Gaps = 5/379 (1%)
Query: 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXX 89
LL + E + A + + P ++ ++P+ V ++ +G L + P+E
Sbjct: 14 LLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGV--FEQLGAAGLLSLPQPEEWG 71
Query: 90 XXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHV 149
+ +EEI+ SV ++ HS L + L+ G+ QK ++LP ++SGE +
Sbjct: 72 GGGQPYEVYLQVLEEIAARWASVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQI 130
Query: 150 GALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG 209
GA ++SEP AGSD ++C A DGGY+ING+K W T+G A ++A+T GS+G
Sbjct: 131 GAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADFYTLFARTG--EGSRG 188
Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269
++ F++ PG S + +K+G+ T ++N + + +G+EG+G+ + S LD
Sbjct: 189 VSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALD 248
Query: 270 LERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVY 329
RL +AA G+ QA LD + Y +R FGR + + Q + ADM A+ ++R+
Sbjct: 249 SGRLGIAAVATGLAQAALDEAVAYANERTAFGRKIIDHQGLGFLLADMAAAVATARATYL 308
Query: 330 SVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYE 389
AR D G+ + + L A + A +VT A+Q GG GY +Y R +R+AK+ +
Sbjct: 309 DAARRRDQGRPYSQQASIAKLTATDAAMKVTTDAVQVFGGVGYTRDYRVERYMREAKIMQ 368
Query: 390 IGAGTSEIRRMIIGRALLK 408
I GT++I+R++I R L +
Sbjct: 369 IFEGTNQIQRLVIARGLTR 387
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 118/379 (31%), Positives = 192/379 (50%), Gaps = 15/379 (3%)
Query: 39 FKESVGQFARENIAPRAANIDQSNSFPQDVNL-------WKLMGNFNLHGITAPQEXXXX 91
E QF +E + P + ++ N ++ L W+ + G+ P E
Sbjct: 46 LNEEQTQFLKELVEPVSRFFEEVNDPAKNDALEMVEETTWQGLKELGAFGLQVPSELGGV 105
Query: 92 XXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
+ +E + VG++ GAH ++ ++ G+ AQK+KYLPKL SGE V A
Sbjct: 106 GLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAA 165
Query: 152 LAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG 209
++EP++GSD ++ A G Y +NG+K+W +NG +A V+AKT + + G
Sbjct: 166 FCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATG 225
Query: 210 -----ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVM 264
ITAF++E+G G + K+G++ S+T E+ F+ VP+ENVLG+ G G V
Sbjct: 226 AVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVA 285
Query: 265 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSS 324
M L+ R +AA G M+ + + + R QFG + F IQ K A M +
Sbjct: 286 MHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMVMLQYVT 345
Query: 325 RSYVYSVARDCDNGKVDPKDCAGVI-LCAAERATQVTLQAIQCLGGNGYVNEYATGRLLR 383
S Y V+ + D G D + A + + +E A +VT + IQ +GG G++ E R+LR
Sbjct: 346 ESMAYMVSANMDQGATDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLR 405
Query: 384 DAKLYEIGAGTSEIRRMII 402
D +++ I GT++I R+ +
Sbjct: 406 DLRIFRIFEGTNDILRLFV 424
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 118/379 (31%), Positives = 192/379 (50%), Gaps = 15/379 (3%)
Query: 39 FKESVGQFARENIAPRAANIDQSNSFPQDVNL-------WKLMGNFNLHGITAPQEXXXX 91
E QF +E + P + ++ N ++ L W+ + G+ P E
Sbjct: 26 LNEEQTQFLKELVEPVSRFFEEVNDPAKNDALEMVEETTWQGLKELGAFGLQVPSELGGV 85
Query: 92 XXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
+ +E + VG++ GAH ++ ++ G+ AQK+KYLPKL SGE V A
Sbjct: 86 GLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAA 145
Query: 152 LAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG 209
++EP++GSD ++ A G Y +NG+K+W +NG +A V+AKT + + G
Sbjct: 146 FCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATG 205
Query: 210 -----ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVM 264
ITAF++E+G G + K+G++ S+T E+ F+ VP+ENVLG+ G G V
Sbjct: 206 AVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVA 265
Query: 265 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSS 324
M L+ R +AA G M+ + + + R QFG + F IQ K A M +
Sbjct: 266 MHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMVMLQYVT 325
Query: 325 RSYVYSVARDCDNGKVDPKDCAGVI-LCAAERATQVTLQAIQCLGGNGYVNEYATGRLLR 383
S Y V+ + D G D + A + + +E A +VT + IQ +GG G++ E R+LR
Sbjct: 326 ESMAYMVSANMDQGATDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLR 385
Query: 384 DAKLYEIGAGTSEIRRMII 402
D +++ I GT++I R+ +
Sbjct: 386 DLRIFRIFEGTNDILRLFV 404
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 191 bits (484), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 123/399 (30%), Positives = 190/399 (47%), Gaps = 27/399 (6%)
Query: 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXX 91
F ++ F + P ++Q + F + V L K G L G P+E
Sbjct: 33 FSSEHKXIAKTTEDFIVNEVLPELEYLEQ-HEFDRSVRLLKEAGELGLLGADVPEEYGGI 91
Query: 92 XXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
+ E+ SRA G +++GAH + +V G+ QK KYLP L +GE + A
Sbjct: 92 GLDKVSSALIAEKFSRAGG-FAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAA 150
Query: 152 LAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG 209
A++EP +GSD +G K A G Y++NG K W TN A +VYAK D +
Sbjct: 151 YALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSAFADVFIVYAKID----GEH 206
Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269
+AFI+EK G ST+ + K G++ S T L+ E+ VP EN+LG+ GKG + + L+
Sbjct: 207 FSAFIVEKDYAGVSTSPEEKKXGIKCSSTRTLILEDALVPKENLLGEIGKGHIIAFNILN 266
Query: 270 LERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVY 329
+ R L G +G + +++ Y QR+QF +P+ F IQ K A+ ++ S VY
Sbjct: 267 IGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARFPLIQEKLANXAAKTYAAESSVY 326
Query: 330 SV-----ARDCDNGKVDPKDCAGVILCAAERATQVTL--------------QAIQCLGGN 370
+R + + KD V AE A + +L + +Q GG
Sbjct: 327 RTVGLFESRXSTLSEEEVKDGKAVAASIAEYAIECSLNKVFGSEVLDYTVDEGVQIHGGY 386
Query: 371 GYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 409
G+ EY R RD+++ I GT+EI R+I+ L++
Sbjct: 387 GFXAEYEIERXYRDSRINRIFEGTNEINRLIVPGTFLRK 425
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|B Chain B, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|C Chain C, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|D Chain D, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND
Length = 393
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/382 (28%), Positives = 189/382 (49%), Gaps = 5/382 (1%)
Query: 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEX 88
S+ ++ Q +F++ FA +AP A DQ FP DV + G+ +
Sbjct: 16 SMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDV--MRKAAQLGFGGVYIQTDV 73
Query: 89 XXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
+ E ++ S H N+C + G+ Q+ K+ P L + E
Sbjct: 74 GGSGLSRLDTSVIFEALATGCTSTTAYISIH-NMCAWMIDSFGNEEQRHKFCPPLCTMEK 132
Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
+ ++EP +GSD + A + YI+NG+K + + + VV +T G K
Sbjct: 133 FASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTG-GPGPK 191
Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGL 268
GI+ ++EKG PG S +K K+G T ++FE+C VP N +G EG+G + + GL
Sbjct: 192 GISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGL 251
Query: 269 DLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYV 328
+ R+ +A+ LG A + + ++ R+QFG PL Q++Q ADM T L ++R V
Sbjct: 252 NGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAARLMV 311
Query: 329 YSVARDCDNGKVDPKD-CAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKL 387
+ A + D C+ L A + + QA+Q GG GY+ +YA + +RD+++
Sbjct: 312 RNAAVALQEERKDAVALCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDSRV 371
Query: 388 YEIGAGTSEIRRMIIGRALLKQ 409
++I G++E+ R++I R+LL++
Sbjct: 372 HQILEGSNEVMRILISRSLLQE 393
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 172 bits (435), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 178/362 (49%), Gaps = 4/362 (1%)
Query: 46 FARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEI 105
F IAP+ A + P+D++L L GI P+E + E I
Sbjct: 43 FVEREIAPKLAEWEHVGEIPRDLHL--NAAEVGLLGIGFPEEVGGSGGNAIDSALVTEAI 100
Query: 106 SRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVV 164
A GS G+ ++ + + + +GS A ++Y+ ++G+ +G+L ++EP AGSDV
Sbjct: 101 LAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVA 160
Query: 165 GMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFST 224
++ +A R Y++NG K + T+G A + +T G G++ +I+K PGF
Sbjct: 161 NLRTRAVREGDTYVVNGAKTFITSGVRADFVTTAVRTG-GPGYGGVSLLVIDKNSPGFEV 219
Query: 225 AQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQ 284
+++LDK+G R SDT EL F + VP +N++G E G +M ERL +A
Sbjct: 220 SRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQFQAERLGIAVQAYATAG 279
Query: 285 ACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKD 344
LD+ + R+RE FGRPL Q I+ K A+M + + +Y +V + G+ +
Sbjct: 280 RALDLAKSWARERETFGRPLTGRQIIRHKLAEMARQVDVACTYTRAVMQRWLAGEDVVAE 339
Query: 345 CAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGR 404
+ A V +A+Q GG GY+ E R RD ++ IG GT+EI +I +
Sbjct: 340 VSMAKNTAVYACDYVVNEAVQIFGGMGYMRESEIERHYRDCRILGIGGGTNEIMNEVIAK 399
Query: 405 AL 406
+
Sbjct: 400 RI 401
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3OIB|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3P4T|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
pdb|3P4T|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
Length = 403
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/383 (29%), Positives = 182/383 (47%), Gaps = 7/383 (1%)
Query: 27 STSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQ 86
S S+ + +++V FA + P A +++ P++++ + L G P+
Sbjct: 21 SMSIWTTAEREALRKTVRAFAEREVLPHAHEWERAGEIPRELH--RKAAELGLLGAGFPE 78
Query: 87 EXXXXXXXXXXHCIAMEEISRASGSVGLSYGA--HSNLCINQLVRHGSPAQKDKYLPKLI 144
+ + EE+ A GS G Y + + + ++ G D Y+ +
Sbjct: 79 DAGGSGGDGADPVVICEEMHYA-GSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTL 137
Query: 145 SGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK 204
GE +GALA++EP GSDV ++ +AD Y+ING K + T+G A +V A+T
Sbjct: 138 RGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVTAARTG-G 196
Query: 205 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVM 264
G+ G++ +++KG PGF +KLDK+G R SDT EL + + VP N++G E G +
Sbjct: 197 PGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQI 256
Query: 265 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSS 324
+ ER+ LA Q CLD+ + + R R+ FGRPL Q +Q A M + +
Sbjct: 257 AAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAGMARRIDVA 316
Query: 325 RSYVYSVARDCDNGKVD-PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLR 383
R Y V G+ + + A E V QA+Q GG GY+ E R R
Sbjct: 317 RVYTRHVVERQLAGETNLIAEVCFAKNTAVEAGEWVANQAVQLFGGMGYMAESEVERQYR 376
Query: 384 DAKLYEIGAGTSEIRRMIIGRAL 406
D ++ IG GT+EI + + L
Sbjct: 377 DMRILGIGGGTTEILTSLAAKTL 399
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 157 bits (398), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 140/286 (48%), Gaps = 6/286 (2%)
Query: 121 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 180
+L + + GS QKD++LP + SG +G ++EP+ GSD GM+ +A R +I+
Sbjct: 117 SLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILT 176
Query: 181 GNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 240
G KMW TNG VA VV+A+TD +GI F++ PGF+ K+ +R S T E
Sbjct: 177 GTKMWITNGSVADVAVVWARTD-----EGIRGFVVPTDTPGFTANTIKSKMSLRASVTSE 231
Query: 241 LVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQF 300
LV + +P+ L + + L+ R + G LG + CL+ L Y REQF
Sbjct: 232 LVLDGVRLPDSARL-PGATSLGAPLRCLNEARFGIVFGALGAARDCLETALAYACSREQF 290
Query: 301 GRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVT 360
RP+G FQ Q K ADM + R D G++ P+ + L A ++
Sbjct: 291 DRPIGGFQLTQQKLADMTLEYGKGFLLALHLGRQKDAGELAPEQVSLGKLNNVREAIEIA 350
Query: 361 LQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRAL 406
A LG +G EY R + + GTSE+ +IIG+AL
Sbjct: 351 RTARTVLGASGITGEYPVMRHANNLESVLTYEGTSEMHTLIIGQAL 396
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 155 bits (392), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 108/379 (28%), Positives = 172/379 (45%), Gaps = 9/379 (2%)
Query: 28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQE 87
T L D + +V QF + P +S + P + L K GN + G+ Q
Sbjct: 22 TDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSE--LAKEFGNLGVLGMHL-QG 78
Query: 88 XXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE 147
+ +A E+ +L + + R+GS QK+++LP+L +G+
Sbjct: 79 YGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGD 138
Query: 148 HVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS 207
+G ++EP+ GS+ GM+ +A R +I+NG KMW TNG +A V+A+TD
Sbjct: 139 AIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGNLADVATVWAQTD----- 193
Query: 208 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG 267
GI F++ PGF+ + KL +R S T ELV +N +P L +G+ +S
Sbjct: 194 DGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQL-PLAEGLSAPLSC 252
Query: 268 LDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSY 327
L+ R + G LG + L+ + Y + RE F +PL +Q Q K A+M L
Sbjct: 253 LNEARFGIVFGALGAARDSLETTIAYTQSREVFDKPLSNYQLTQEKLANMTVELGKGMLL 312
Query: 328 VYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKL 387
+ R D V P+ + L A + + LGG+G EY+ R + +
Sbjct: 313 AIHLGRIKDAEGVRPEQISLGKLNNVREAIAIARECRTLLGGSGITLEYSPLRHANNLES 372
Query: 388 YEIGAGTSEIRRMIIGRAL 406
GTSE+ + IG+AL
Sbjct: 373 VLTYEGTSEMHLLSIGKAL 391
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
pdb|2R0N|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 172/374 (45%), Gaps = 12/374 (3%)
Query: 36 QLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXX 95
++ +++ + +E + PR +++ F +++ MG + G T +
Sbjct: 20 EILIRDTFRTYCQERLMPRILLANRNEVFHREI--ISEMGELGVLGPTI-KGYGCAGVSS 76
Query: 96 XXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMS 155
+ + E+ R + S+L ++ + +GS Q+ KYLP+L GE +G ++
Sbjct: 77 VAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLT 136
Query: 156 EPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAF 213
EPN+GSD M+ +A + + Y +NG K W TN P+A VV+A+ + I F
Sbjct: 137 EPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGF 192
Query: 214 IIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL-GQEGKGVYVMMSGLDLER 272
++EKGM G S + K +R S T ++ + VP ENVL G G L+ R
Sbjct: 193 LLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLG--GPFGCLNNAR 250
Query: 273 LVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVA 332
+A G LG + CL Y R QFG PL Q IQ K ADM T + +
Sbjct: 251 YGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLG 310
Query: 333 RDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGA 392
R D K P+ + + +A + QA LGGNG +EY R + +
Sbjct: 311 RLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYE 370
Query: 393 GTSEIRRMIIGRAL 406
GT +I +I+GRA+
Sbjct: 371 GTHDIHALILGRAI 384
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
Length = 392
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 171/374 (45%), Gaps = 12/374 (3%)
Query: 36 QLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXX 95
++ +++ + +E + PR +++ F +++ MG + G T
Sbjct: 18 EILIRDTFRTYCQERLMPRILLANRNEVFHREI--ISEMGELGVLGPTIKGYGCAGVSSV 75
Query: 96 XXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMS 155
+A E+ R + S+L ++ + +GS Q+ KYLP+L GE +G ++
Sbjct: 76 AYGLLA-RELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLT 134
Query: 156 EPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAF 213
EPN+GSD M+ +A + + Y +NG K W TN P+A VV+A+ + I F
Sbjct: 135 EPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGF 190
Query: 214 IIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL-GQEGKGVYVMMSGLDLER 272
++EKGM G S + K +R S T ++ + VP ENVL G G L+ R
Sbjct: 191 LLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLG--GPFGCLNNAR 248
Query: 273 LVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVA 332
+A G LG + CL Y R QFG PL Q IQ K ADM T + +
Sbjct: 249 YGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLG 308
Query: 333 RDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGA 392
R D K P+ + + +A + QA LGGNG +EY R + +
Sbjct: 309 RLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYE 368
Query: 393 GTSEIRRMIIGRAL 406
GT +I +I+GRA+
Sbjct: 369 GTHDIHALILGRAI 382
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 148 bits (374), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 171/374 (45%), Gaps = 12/374 (3%)
Query: 36 QLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXX 95
++ +++ + +E + PR +++ F +++ MG + G T
Sbjct: 20 EILIRDTFRTYCQERLMPRILLANRNEVFHREI--ISEMGELGVLGPTIKGYGCAGVSSV 77
Query: 96 XXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMS 155
+A E+ R + S+L ++ + +GS Q+ KYLP+L GE +G ++
Sbjct: 78 AYGLLA-RELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLT 136
Query: 156 EPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAF 213
EPN+GSD M+ +A + + Y +NG K W TN P+A VV+A+ + I F
Sbjct: 137 EPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGF 192
Query: 214 IIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL-GQEGKGVYVMMSGLDLER 272
++EKGM G S + K +R S T ++ + VP ENVL G G L+ R
Sbjct: 193 LLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLG--GPFGCLNNAR 250
Query: 273 LVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVA 332
+A G LG + CL Y R QFG PL Q IQ K ADM T + +
Sbjct: 251 YGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLG 310
Query: 333 RDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGA 392
R D K P+ + + +A + QA LGGNG +EY R + +
Sbjct: 311 RLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYD 370
Query: 393 GTSEIRRMIIGRAL 406
GT +I +I+GRA+
Sbjct: 371 GTHDIHALILGRAI 384
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|C Chain C, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|D Chain D, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|E Chain E, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|F Chain F, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|G Chain G, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|H Chain H, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|I Chain I, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
Length = 385
Score = 148 bits (373), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 102/383 (26%), Positives = 171/383 (44%), Gaps = 8/383 (2%)
Query: 25 FSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITA 84
F + L + + +++ +F + P + + FP +L G T
Sbjct: 4 FYALEDLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFP--THLIPRFAELGFLGPTL 61
Query: 85 PQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI 144
P E + + E+ R + S+L + + +GS QK ++LPKL
Sbjct: 62 PPEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLA 121
Query: 145 SGEHVGALAMSEPNAGSDVVG-MKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDI 203
GE VG ++EP+ GSD G MK +A R +++NG KMW TNG +A V++AK +
Sbjct: 122 RGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAHLAVIWAKDE- 180
Query: 204 KAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYV 263
+ F++ PGF + K+ +R S T ELV E VP E++ + G+
Sbjct: 181 ---GGEVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVP-ESLRLPKALGLKA 236
Query: 264 MMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQS 323
+S L R +A G +G ++A + + + + R FG PL + Q +Q K A+M
Sbjct: 237 PLSCLTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKKQLVQAKLAEMLAWHTE 296
Query: 324 SRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLR 383
+ +AR D GK+ P + +A Q A LGG+G EY R +
Sbjct: 297 GLLLAWRLARLKDEGKLTPAQVSLAKRQNVWKALQAARMARDILGGSGITLEYHAIRHML 356
Query: 384 DAKLYEIGAGTSEIRRMIIGRAL 406
+ + GT ++ +++GR +
Sbjct: 357 NLETVYTYEGTHDVHTLVLGREI 379
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 153/308 (49%), Gaps = 6/308 (1%)
Query: 98 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 157
+ IA EI+R S HS+L + + GS AQK+KYLP L V A++EP
Sbjct: 118 NAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEP 177
Query: 158 NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEK 217
+ GSD G+ A +V+GG+ ING K W N A L+++A+ + I FI++K
Sbjct: 178 DNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTT---TNQINGFIVKK 234
Query: 218 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG-LDLERLVLA 276
PG + +K+G+R +++ +N FVP+E+ L G + S L + R+++A
Sbjct: 235 DAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRL--PGVNSFQDTSKVLAVSRVMVA 292
Query: 277 AGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCD 336
P+GI D+ Y+++R+QFG PL FQ Q K M +Q+ + + + +
Sbjct: 293 WQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYE 352
Query: 337 NGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSE 396
G++ P + + +A + + LGGNG + ++ + D + GT +
Sbjct: 353 TGQMTPGQASLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYD 412
Query: 397 IRRMIIGR 404
I ++ GR
Sbjct: 413 INTLVTGR 420
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 153/308 (49%), Gaps = 6/308 (1%)
Query: 98 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 157
+ IA EI+R S HS+L + + GS AQK+KYLP L V A++EP
Sbjct: 118 NAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEP 177
Query: 158 NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEK 217
+ GSD G+ A +V+GG+ ING K W N A L+++A+ + I FI++K
Sbjct: 178 DNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTT---TNQINGFIVKK 234
Query: 218 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG-LDLERLVLA 276
PG + +K+G+R +++ +N FVP+E+ L G + S L + R+++A
Sbjct: 235 DAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRL--PGVNSFQDTSKVLAVSRVMVA 292
Query: 277 AGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCD 336
P+GI D+ Y+++R+QFG PL FQ Q K M +Q+ + + + +
Sbjct: 293 WQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYE 352
Query: 337 NGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSE 396
G++ P + + +A + + LGGNG + ++ + D + GT +
Sbjct: 353 TGQMTPGQASLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYD 412
Query: 397 IRRMIIGR 404
I ++ GR
Sbjct: 413 INTLVTGR 420
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of
Fk520 Polyketide Immunosuppresant
Length = 366
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 139/284 (48%), Gaps = 13/284 (4%)
Query: 129 RHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGY-IINGNKMWCT 187
R G Q+ +L +L SG+ + A+ SE AGSD+ M+ + R+DG +++G+K+W T
Sbjct: 87 RLGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLSAMRTRV-RLDGDTAVVDGHKVWTT 144
Query: 188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCF 247
A LVV+ + +G+ ++ PG + G R + +L +
Sbjct: 145 AAAYADHLVVFGLQEDGSGA----VVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVR 200
Query: 248 VPNENVLGQEGKGVYVMMSG-LDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGE 306
VP VL G + ++++ L R +A G +GI++AC + + R REQFGRPLG+
Sbjct: 201 VPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGD 260
Query: 307 FQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILC---AAERATQVTLQA 363
Q + G AD++TA Q + + D G P+ IL AAERA A
Sbjct: 261 HQLVAGHIADLWTAEQIAARVCEYASDHWDEGS--PEMVPATILAKHVAAERAAAGAATA 318
Query: 364 IQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALL 407
Q L G + R RDAKL EI G+SE+ R+++ + L
Sbjct: 319 AQVLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVMLAQHAL 362
>pdb|3DJL|A Chain A, Crystal Structure Of Alkylation Response Protein E. Coli
Aidb
pdb|3U33|A Chain A, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|B Chain B, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|C Chain C, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|D Chain D, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|E Chain E, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|F Chain F, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|G Chain G, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|H Chain H, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|I Chain I, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|J Chain J, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|K Chain K, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|L Chain L, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
Length = 541
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 140/297 (47%), Gaps = 31/297 (10%)
Query: 132 SPAQKDKYLPKLISGEHVGAL----AMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWC 186
+P D+Y L+ G L M+E GSDV+ +A+R+ DG Y + G+K W
Sbjct: 158 TPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHK-WF 216
Query: 187 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMP-GFSTAQKL----DKLGMRGSDTCEL 241
+ P + +V A+T + G++ F + + +P G A +L DKLG R + +CE+
Sbjct: 217 FSVPQSDAHLVLAQT-----AGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEV 271
Query: 242 VFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 301
F++ +LG EG+G+ +++ + R A G +M+ + + + QR FG
Sbjct: 272 EFQDAI---GWLLGLEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFG 328
Query: 302 RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKD---------CAGVILCA 352
PL + ++ + M L+ + ++ +AR D + D K+ A ++C
Sbjct: 329 NPLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDR-RADAKEALWARLFTPAAKFVIC- 386
Query: 353 AERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 409
+R +A++ LGG GY E RL R+ + I G+ I + + R L KQ
Sbjct: 387 -KRGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQ 442
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
pdb|2WBI|B Chain B, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
Length = 428
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 118/291 (40%), Gaps = 10/291 (3%)
Query: 130 HGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMWCTN 188
+GS QK ++L L+ G M+EP+ A SD ++C R + Y+ING K W +
Sbjct: 130 YGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGKKWWSSG 189
Query: 189 G--PVAQTLVVYAKTDIKAGS--KGITAFIIEKGMPGFSTAQKLDKLGMRGS---DTCEL 241
P + +V +T + S K + ++ PG + L G + E+
Sbjct: 190 AGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEI 249
Query: 242 VFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 301
F VP N++ EG+G + L R+ +G+ + L ++ QR F
Sbjct: 250 HFNQVRVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLAERALQIMCERATQRIAFK 309
Query: 302 RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN-GKVDPKDCAGVILCAAERA-TQV 359
+ L + + A+ A++ R A D G K +I AA RA +++
Sbjct: 310 KKLYAHEVVAHWIAESRIAIEKIRLLTLKAAHSMDTLGSAGAKKEIAMIKVAAPRAVSKI 369
Query: 360 TLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQQ 410
AIQ GG G +Y + ++ + G E+ I L+ Q
Sbjct: 370 VDWAIQVCGGAGVSQDYPLANMYAITRVLRLADGPDEVHLSAIATMELRDQ 420
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
Mycobacterium Abscessus
Length = 415
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 118/291 (40%), Gaps = 8/291 (2%)
Query: 127 LVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMW 185
L R+GS QK+ +L L+ G+ A M+EP+ A SD M A +ING K W
Sbjct: 121 LHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAATAVVEGDEVVINGRKWW 180
Query: 186 CT--NGPVAQTLVVYAKTDIKAGSKGITAFI-IEKGMPGFSTAQKLDKLGMRGSDTCELV 242
T P + ++ TD A + + + PG + + L +G V
Sbjct: 181 STGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHGV 240
Query: 243 --FENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQF 300
F+N +P + + GKG + L R+ A +G+ + L+ R F
Sbjct: 241 VSFDNVRLPADAFIAGPGKGFEIAQGRLGPGRVHHAMRLIGLAEVALEHACRRGLDRTAF 300
Query: 301 GRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN-GKVDPKDCAGVILCAAER-ATQ 358
G+PL + + AD A+ +R V A D G + I AA A Q
Sbjct: 301 GKPLVNLGGNRERIADARIAINQTRLLVLHAAWLLDTVGIMGALSAVSEIKVAAPNMAQQ 360
Query: 359 VTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 409
V AIQ GG G N++ +A+ + G E+ R ++ R L +
Sbjct: 361 VIDMAIQIHGGGGLSNDFPLAAAWVNARALRLADGPDEVHRGVVARIELAK 411
>pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp
Length = 439
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 102/222 (45%), Gaps = 11/222 (4%)
Query: 175 GGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMR 234
GG++++G K + PV V+ A+TD G + + ++ + PGF+ D LGMR
Sbjct: 161 GGWLLSGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMR 220
Query: 235 GSDTCELVFENCFVPNENVLGQEGKGVY--VMMSGLDLERLVLAAGPLGIMQACLDVVLP 292
S T ++VF++C +P ++VL ++ G +++G + + + +G+ QA D +
Sbjct: 221 ASGTVDIVFDDCPIPADHVLMRDPVGARNDAVLAGQTVSSVSVLGVYVGVAQAAYDTAVA 280
Query: 293 YVRQREQFGRPLGEFQFIQGKTADMY-------TALQSSRSYVYSVARDCDN-GKVDPKD 344
+ +R + + + + +Y +AL ++ + ++ D D G+ +
Sbjct: 281 ALERRPEPPQ-AAALTLVAEIDSRLYALRATAGSALTAADALSADLSGDMDERGRQMMRH 339
Query: 345 CAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAK 386
L A ++ + +GG Y + RLLRD +
Sbjct: 340 FQCAKLAVNRLAPEIVSDCLSLVGGASYTAGHPLARLLRDVQ 381
>pdb|3MXL|A Chain A, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|B Chain B, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|C Chain C, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|D Chain D, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
Length = 395
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 82/357 (22%), Positives = 145/357 (40%), Gaps = 32/357 (8%)
Query: 50 NIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXH-CIAMEEISRA 108
I+ AA+ D++ +FP V ++ L G T P E A+ ++ A
Sbjct: 26 RISAEAADRDRTGTFP--VEAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALMRLAEA 83
Query: 109 SGSVGLSYGAH--SNLCINQLVRHGSP---AQKDKYLPKLISGEHVGALAMSEPNAGSDV 163
S L++ L + +HG+P A ++ L + GE A+ +
Sbjct: 84 DASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPG---- 139
Query: 164 VGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFS 223
V + +D GG++++G K+ + P+A V+A+ GS + ++ + PG +
Sbjct: 140 VVTELHSDGA-GGWLLSGRKVLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLT 198
Query: 224 TAQKLDKLGMRGSDTCELVFENCFVPNENVL--GQEGKGVYVMMSGLDLERLVLAAGPLG 281
D LGMR S T E+VF+ C V + +L G G +++G + + + G
Sbjct: 199 VLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGARRDAVLAGQTVSSITMLGIYAG 258
Query: 282 IMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV- 340
I QA D+ + + R G P + + A + T L + R+ V + + D V
Sbjct: 259 IAQAARDIAVGFCAGRG--GEPRAGARAL---VAGLDTRLYALRTTVGAALTNADAASVD 313
Query: 341 ---DPKDCAGVI--------LCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAK 386
DP + + + E A V + +GG Y + RL RD +
Sbjct: 314 LSGDPDERGRRMMTPFQYAKMTVNELAPAVVDDCLSLVGGLAYTAGHPLSRLYRDVR 370
>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|B Chain B, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|C Chain C, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|D Chain D, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|E Chain E, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|F Chain F, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|G Chain G, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|H Chain H, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
Length = 437
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 128/319 (40%), Gaps = 38/319 (11%)
Query: 102 MEEISRASGSVGLSYGAH-SNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAG 160
+ EI+ A GS+G +G H +N + +L+ GS Q++ ++ A SE N
Sbjct: 100 VREIAAADGSLGHLFGYHLTNAPMIELI--GSQEQEEHLYTQIAQNNWWTGNASSENN-- 155
Query: 161 SDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-ITAFIIEKG 218
S V+ K A DGGY++NG K +C+ + L V+ + +G I A I
Sbjct: 156 SHVLDWKVSATPTEDGGYVLNGTKHFCSGAKGSDLLFVFGVVQDDSPQQGAIIAAAIPTS 215
Query: 219 MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG------LDLER 272
G + +GMR +D+ F N V + VLG V + + +
Sbjct: 216 RAGVTPNDDWAAIGMRQTDSGSTDFHNVKVEPDEVLGAPNAFVLAFIQSERGSLFAPIAQ 275
Query: 273 LVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYT---------ALQ- 322
L+ A LGI LD Y R + + P G IQ T D YT ALQ
Sbjct: 276 LIFANVYLGIAHGALDAAREYTRTQARPWTPAG----IQQATEDPYTIRSYGEFTIALQG 331
Query: 323 ---SSRSYVYSVARDCDNGK-VDPKD-------CAGVILCAAERATQVTLQAIQCLGGNG 371
++R + + D G + P+D +GV A A ++ + +G G
Sbjct: 332 ADAAAREAAHLLQTVWDKGDALTPEDRGELMVKVSGVKALATNAALNISSGVFEVIGARG 391
Query: 372 YVNEYATGRLLRDAKLYEI 390
Y R R+ + + +
Sbjct: 392 THPRYGFDRFWRNVRTHSL 410
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|B Chain B, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|C Chain C, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|D Chain D, Podospora Anserina Nitroalkane Oxidase
Length = 438
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 124/306 (40%), Gaps = 34/306 (11%)
Query: 135 QKDKYLPKLISGE--HVGALAMSEPNAGSDVV-----GMKCKADRVDGG-YIINGNKMWC 186
Q ++L +SGE + +L SEP ++ + G + A R++G ++ING KMW
Sbjct: 113 QHAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTA-RLEGDEWVINGEKMWA 171
Query: 187 TNGP--------VAQTLVVYAKTDIKAGSKGITAFII---------EKGMPGFSTAQKLD 229
TN +A + A T ++ G +I G F + +
Sbjct: 172 TNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVA 231
Query: 230 KLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDV 289
G + + N VP +NVL G+G V D +++ A +G+M+A D
Sbjct: 232 TPGHTSVSGPHVRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRAAFDA 291
Query: 290 VLPYVRQREQFGR-PLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPK----- 343
L + ++ + G PL E Q + + +++R+ + A +NG D
Sbjct: 292 ALKFAKEDNRGGAVPLLERQAFADLLSGVKIQTEAARALTWKAAHAMENGPGDYDARREL 351
Query: 344 DCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEI-GAGTSEIRRMII 402
A + C +E A + I +G + Y + LL A + I G IRR +
Sbjct: 352 ALAAKVFC-SEAAVKACTDVINAVGISAYDLQRPFSDLLNTAVVLPIFDGGNVGIRRRHL 410
Query: 403 GRALLK 408
+ +LK
Sbjct: 411 QQLMLK 416
>pdb|2C0U|A Chain A, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|B Chain B, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|C Chain C, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|D Chain D, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
Length = 439
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/337 (19%), Positives = 131/337 (38%), Gaps = 54/337 (16%)
Query: 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 157
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 78 IILEELFAVEPATSITIVA-TALGLXPVILCDSPSLQEKFLKPFISGEGEPLASLXHSEP 136
Query: 158 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 189
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 137 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 196
Query: 190 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 242
P Q V+ + A +K I+ G P + G +
Sbjct: 197 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 246
Query: 243 FENCFVPNENVLGQEG-KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 301
F VP+EN+L G K ++ + ++ A +G +A + L + + + G
Sbjct: 247 FTEFHVPHENLLCTPGLKAQGLVETAFAXSAALVGAXAIGTARAAFEEALVFAKSDTRGG 306
Query: 302 -RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCAAERA 356
+ + E Q + K D L++SR V+ ++ KV + + + A
Sbjct: 307 SKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEXAXQTKIYTTDVA 366
Query: 357 TQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAG 393
+ + A + +G Y + + RLL + Y + G
Sbjct: 367 VECVIDAXKAVGXKSYAKDXSFPRLLNEVXCYPLFDG 403
>pdb|3D9D|A Chain A, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|B Chain B, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|C Chain C, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|D Chain D, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9E|A Chain A, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|B Chain B, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|C Chain C, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|D Chain D, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3FCJ|A Chain A, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|B Chain B, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|C Chain C, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|D Chain D, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
Length = 438
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/351 (19%), Positives = 139/351 (39%), Gaps = 55/351 (15%)
Query: 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 157
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 77 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 135
Query: 158 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 189
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 136 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 195
Query: 190 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 242
P Q V+ + A +K I+ G P + G +
Sbjct: 196 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 245
Query: 243 FENCFVPNENVLGQEG-KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 301
F VP+EN+L G K ++ + + ++ A +G +A + L + + + G
Sbjct: 246 FTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGG 305
Query: 302 -RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCAAERA 356
+ + E Q + K D L++SR V+ ++ KV + + + A
Sbjct: 306 SKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVA 365
Query: 357 TQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEI-GAGTSEIRRMIIGRAL 406
+ + A++ +G Y + + RLL + Y + G +RR + R +
Sbjct: 366 VECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFNGGNIGLRRRQMQRVM 416
>pdb|2C12|A Chain A, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|B Chain B, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|C Chain C, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|D Chain D, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|E Chain E, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|F Chain F, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
Length = 439
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/351 (19%), Positives = 139/351 (39%), Gaps = 55/351 (15%)
Query: 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 157
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 78 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 136
Query: 158 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 189
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 137 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 196
Query: 190 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 242
P Q V+ + A +K I+ G P + G +
Sbjct: 197 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 246
Query: 243 FENCFVPNENVLGQEG-KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 301
F VP+EN+L G K ++ + + ++ A +G +A + L + + + G
Sbjct: 247 FTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGG 306
Query: 302 -RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCAAERA 356
+ + E Q + K D L++SR V+ ++ KV + + + A
Sbjct: 307 SKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVA 366
Query: 357 TQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEI-GAGTSEIRRMIIGRAL 406
+ + A++ +G Y + + RLL + Y + G +RR + R +
Sbjct: 367 VECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVM 417
>pdb|3D9G|A Chain A, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|B Chain B, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|C Chain C, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|D Chain D, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
Length = 438
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/351 (19%), Positives = 139/351 (39%), Gaps = 55/351 (15%)
Query: 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 157
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 77 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 135
Query: 158 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 189
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 136 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 195
Query: 190 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 242
P Q V+ + A +K I+ G P + G +
Sbjct: 196 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 245
Query: 243 FENCFVPNENVLGQEG-KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 301
F VP+EN+L G K ++ + + ++ A +G +A + L + + + G
Sbjct: 246 FTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGG 305
Query: 302 -RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCAAERA 356
+ + E Q + K D L++SR V+ ++ KV + + + A
Sbjct: 306 SKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVA 365
Query: 357 TQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEI-GAGTSEIRRMIIGRAL 406
+ + A++ +G Y + + RLL + Y + G +RR + R +
Sbjct: 366 VECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVM 416
>pdb|2REH|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/337 (19%), Positives = 133/337 (39%), Gaps = 54/337 (16%)
Query: 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 157
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 78 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 136
Query: 158 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 189
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 137 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 196
Query: 190 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 242
P Q V+ + A +K I+ G P + G +
Sbjct: 197 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 246
Query: 243 FENCFVPNENVLGQEG-KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 301
F VP+EN+L G K ++ + + ++ A +G +A + L + + + G
Sbjct: 247 FTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGG 306
Query: 302 -RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCAAERA 356
+ + E Q + K D L++SR V+ ++ KV + + + A
Sbjct: 307 SKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVA 366
Query: 357 TQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAG 393
+ + A++ +G Y + + RLL + Y + G
Sbjct: 367 VECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFEG 403
>pdb|3D9F|A Chain A, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|B Chain B, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|C Chain C, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|D Chain D, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
Length = 438
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/351 (19%), Positives = 139/351 (39%), Gaps = 55/351 (15%)
Query: 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 157
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 77 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 135
Query: 158 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 189
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 136 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 195
Query: 190 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 242
P Q V+ + A +K I+ G P + G +
Sbjct: 196 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 245
Query: 243 FENCFVPNENVLGQEG-KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 301
F VP+EN+L G K ++ + + ++ A +G +A + L + + + G
Sbjct: 246 FTEFHVPHENLLCTPGLKAQGLVETAFAMAAALVGAMAIGTARAAFEEALVFAKSDTRGG 305
Query: 302 -RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCAAERA 356
+ + E Q + K D L++SR V+ ++ KV + + + A
Sbjct: 306 SKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVA 365
Query: 357 TQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEI-GAGTSEIRRMIIGRAL 406
+ + A++ +G Y + + RLL + Y + G +RR + R +
Sbjct: 366 VECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVM 416
>pdb|2ZAF|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/337 (19%), Positives = 133/337 (39%), Gaps = 54/337 (16%)
Query: 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 157
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 78 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 136
Query: 158 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 189
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 137 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 196
Query: 190 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 242
P Q V+ + A +K I+ G P + G +
Sbjct: 197 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 246
Query: 243 FENCFVPNENVLGQEG-KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 301
F VP+EN+L G K ++ + + ++ A +G +A + L + + + G
Sbjct: 247 FTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGG 306
Query: 302 -RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCAAERA 356
+ + E Q + K D L++SR V+ ++ KV + + + A
Sbjct: 307 SKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVA 366
Query: 357 TQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAG 393
+ + A++ +G Y + + RLL + Y + G
Sbjct: 367 VECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDG 403
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 91/228 (39%), Gaps = 32/228 (14%)
Query: 119 HSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGG 176
H + I + G+ Q++K+LP + +G A +E GS+V G++ A D
Sbjct: 121 HWGMFIPAIKGQGTDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTDE 180
Query: 177 YIIN-----GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIE-------KGMPGFS 223
++I+ +K W G V+ VVYA+ G+ FI++ K +PG +
Sbjct: 181 FVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGKDYGVNGFIVQLRSLEDHKPLPGVT 240
Query: 224 TAQKLDKLG---MRGSDTCELVFENCFVPNENVL------GQEGKGV------YVMMSGL 268
K G D L F++ +P + +L +EGK V ++ +
Sbjct: 241 VGDIGMKFGNGAYNSMDNGVLSFDHVRIPRDQMLMRVSQVTKEGKYVQSDIPRQLLYGTM 300
Query: 269 DLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLG--EFQFIQGKT 314
R + A M + + Y R QFG G E Q I KT
Sbjct: 301 VYVRQSIVADASLAMSRAVCIATRYSAVRRQFGSQNGGQETQVIDYKT 348
>pdb|2RFQ|A Chain A, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
pdb|2RFQ|B Chain B, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
pdb|2RFQ|C Chain C, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
pdb|2RFQ|D Chain D, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
Length = 394
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 173 VDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK-GITAFIIEKGMPGFSTAQKLDKL 231
VDGGY +NG W ++G + V IK G +F+I + + + +
Sbjct: 129 VDGGYTVNGAWAW-SSGCDHASWAVLGGPVIKDGRPVDFVSFLIPR--EDYRIDDVWNVV 185
Query: 232 GMRGSDTCELVFENCFVPNENVL 254
G+RG+ + +V E+ FVP VL
Sbjct: 186 GLRGTGSNTVVVEDVFVPTHRVL 208
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 19/164 (11%)
Query: 119 HSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGG 176
H + + L+ + Q++++ + E G A +E G+ + G++ A D
Sbjct: 103 HLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQE 162
Query: 177 YIINGN-----KMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFII-------EKGMPGFS 223
+I+N K W G + +V A+ + G+ AF++ K +PG +
Sbjct: 163 FILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGIT 222
Query: 224 TAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGK----GVYV 263
K G D L +N +P EN+L + + G YV
Sbjct: 223 VGDIGPKFGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYV 266
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 88/228 (38%), Gaps = 32/228 (14%)
Query: 119 HSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGG 176
H + + + G+ Q+ K+L + +G A +E GS+V G++ A D
Sbjct: 102 HWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDE 161
Query: 177 YIIN-----GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIE-------KGMPGFS 223
++I+ +K W G V+ VVYA+ GI FI++ +P +
Sbjct: 162 FVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNIT 221
Query: 224 TAQKLDKLG---MRGSDTCELVFENCFVPNENVLGQEGK----GVYV--------MMSGL 268
K+G D L+F++ +P + +L + K G YV + +
Sbjct: 222 VGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTM 281
Query: 269 DLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLG--EFQFIQGKT 314
R + A + + + Y R QFG G E Q I KT
Sbjct: 282 VYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKT 329
>pdb|3AFE|A Chain A, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFE|B Chain B, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFE|C Chain C, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFE|D Chain D, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFF|A Chain A, Crystal Structure Of The Hsaa Monooxygenase From M.
Tuberculosis
pdb|3AFF|B Chain B, Crystal Structure Of The Hsaa Monooxygenase From M.
Tuberculosis
Length = 394
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 173 VDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK-GITAFIIEKGMPGFSTAQKLDKL 231
VDGGY++NG+ W + A V IK G +F+I + + +
Sbjct: 129 VDGGYLVNGSWNWSSGCDHASWTFVGGPV-IKDGRPVDFGSFLIPRSE--YEIKDVWYVV 185
Query: 232 GMRGSDTCELVFENCFVPNENVL 254
G+RG+ + LV ++ FVP L
Sbjct: 186 GLRGTGSNTLVVKDVFVPRHRFL 208
>pdb|3G8D|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
pdb|3G8D|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 444
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 231 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 285
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 267 IGYRGAGTFEFLFENGEFYFIEMNTRIQVAHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 326
Query: 286 CLDV 289
+ V
Sbjct: 327 EVHV 330
>pdb|3RUP|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RUP|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RV3|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
pdb|3RV3|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
Length = 452
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 231 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 285
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 270 IGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 329
Query: 286 CLDV 289
+ V
Sbjct: 330 EVHV 333
>pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
pdb|1DV2|B Chain B, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
Length = 452
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 231 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 285
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 270 IGYRGAGTFEFLFENGEFYFIKMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 329
Query: 286 CLDV 289
+ V
Sbjct: 330 EVHV 333
>pdb|3JZF|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZF|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZI|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
pdb|3JZI|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
Length = 486
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 231 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 285
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 288 IGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 347
Query: 286 CLDV 289
+ V
Sbjct: 348 EVHV 351
>pdb|1BNC|A Chain A, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1BNC|B Chain B, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1DV1|A Chain A, Structure Of Biotin Carboxylase (Apo)
pdb|1DV1|B Chain B, Structure Of Biotin Carboxylase (Apo)
pdb|2J9G|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2J9G|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2VR1|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2VR1|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2V58|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V58|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V59|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V59|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V5A|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2V5A|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2W6M|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6M|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6O|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6O|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6P|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6P|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6Q|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Q|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Z|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W6Z|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W70|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W70|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W71|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
pdb|2W71|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
Length = 449
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 231 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 285
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 267 IGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 326
Query: 286 CLDV 289
+ V
Sbjct: 327 EVHV 330
>pdb|3RV4|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase R16e Mutant
In Complex With Mg-Adp And Bicarbonate
Length = 452
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 231 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 285
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 270 IGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 329
Query: 286 CLDV 289
+ V
Sbjct: 330 EVHV 333
>pdb|3G8C|A Chain A, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
pdb|3G8C|B Chain B, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
Length = 444
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 231 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 285
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 267 IGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 326
Query: 286 CLDV 289
+ V
Sbjct: 327 EVHV 330
>pdb|2GPS|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPS|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 231 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 285
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 287 IGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 346
Query: 286 CLDV 289
+ V
Sbjct: 347 EVHV 350
>pdb|2GPW|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|C Chain C, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|D Chain D, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 231 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 285
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 287 IGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 346
Query: 286 CLDV 289
+ V
Sbjct: 347 EVHV 350
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 351 CAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD--AKLYEIGAGTSEIRRMI 401
C A R T+V + LG NG++ + T RLLR+ ++Y + G+ I R +
Sbjct: 8 CTARRRTRVLI-----LGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 55
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 351 CAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD--AKLYEIGAGTSEIRRMI 401
C A R T+V + LG NG++ + T RLLR+ ++Y + G+ I R +
Sbjct: 8 CTARRRTRVLI-----LGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 55
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 351 CAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD--AKLYEIGAGTSEIRRMI 401
C A R T+V + LG NG++ + T RLLR+ ++Y + G+ I R +
Sbjct: 8 CTARRRTRVLI-----LGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 55
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 351 CAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD--AKLYEIGAGTSEIRRMI 401
C A R T+V + LG NG++ + T RLLR+ ++Y + G+ I R +
Sbjct: 8 CTARRRTRVLI-----LGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 55
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 351 CAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD--AKLYEIGAGTSEIRRMI 401
C A R T+V + LG NG++ + T RLLR+ ++Y + G+ I R +
Sbjct: 8 CTARRRTRVLI-----LGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 55
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 351 CAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD--AKLYEIGAGTSEIRRMI 401
C A R T+V + LG NG++ + T RLLR+ ++Y + G+ I R +
Sbjct: 310 CTARRRTRVLI-----LGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 357
>pdb|2OR0|A Chain A, Structural Genomics, The Crystal Structure Of A Putative
Hydroxylase From Rhodococcus Sp. Rha1
pdb|2OR0|B Chain B, Structural Genomics, The Crystal Structure Of A Putative
Hydroxylase From Rhodococcus Sp. Rha1
Length = 414
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 18/127 (14%)
Query: 144 ISGEHVGALAMSEPNAGSDVVGMKCK------------ADRVDGGYIINGNKMWCTNGPV 191
I G H LA ++P ++ G A VDGGY++ G W +
Sbjct: 101 IVGVHPWELAFADPQVQEEIWGEDNDTWXASPYAPXGVATPVDGGYVLKGR--WSFSSGT 158
Query: 192 AQTLVVYAKTDIKAGSKGI-TAFIIEKGMPGFS---TAQKLDKLGMRGSDTCELVFENCF 247
+ + G GI T + +P D +G+RG+ + +L+ + F
Sbjct: 159 DHCQWAFLGAXVGDGEGGIATPSSLHVILPRTDYQIVEDTWDVIGLRGTGSKDLIVDGAF 218
Query: 248 VPNENVL 254
VP L
Sbjct: 219 VPGYRTL 225
>pdb|3V71|A Chain A, Crystal Structure Of Puf-6 In Complex With 5be13 Rna
Length = 382
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 112 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGM 166
VGL + + N + +LV +PA++ + L ++I G G LAM + VV +
Sbjct: 63 VGLCHSRNGNFIVQKLVELATPAEQRELLRQMIDG---GLLAMCKDKFACRVVQL 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,565,082
Number of Sequences: 62578
Number of extensions: 475784
Number of successful extensions: 1020
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 859
Number of HSP's gapped (non-prelim): 79
length of query: 410
length of database: 14,973,337
effective HSP length: 101
effective length of query: 309
effective length of database: 8,652,959
effective search space: 2673764331
effective search space used: 2673764331
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)