Query 015286
Match_columns 410
No_of_seqs 207 out of 1350
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 04:52:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015286.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015286hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0139 Short-chain acyl-CoA d 100.0 2.6E-82 5.7E-87 563.1 24.2 363 30-396 36-398 (398)
2 KOG0141 Isovaleryl-CoA dehydro 100.0 2.1E-81 4.5E-86 548.5 28.4 378 32-409 41-420 (421)
3 KOG0140 Medium-chain acyl-CoA 100.0 1.8E-80 4E-85 542.2 29.1 378 29-409 25-405 (408)
4 PLN02519 isovaleryl-CoA dehydr 100.0 2.1E-68 4.6E-73 521.8 43.9 382 29-410 23-404 (404)
5 cd01151 GCD Glutaryl-CoA dehyd 100.0 1.4E-67 2.9E-72 513.9 44.1 373 29-408 10-382 (386)
6 cd01156 IVD Isovaleryl-CoA deh 100.0 2.5E-67 5.3E-72 511.0 42.7 374 33-408 3-376 (376)
7 PRK03354 crotonobetainyl-CoA d 100.0 3.3E-67 7.1E-72 509.9 42.5 374 31-409 4-378 (380)
8 cd01157 MCAD Medium chain acyl 100.0 2.9E-67 6.3E-72 510.7 42.0 374 33-409 2-378 (378)
9 cd01162 IBD Isobutyryl-CoA deh 100.0 8.4E-67 1.8E-71 506.6 42.3 373 33-409 2-375 (375)
10 PRK12341 putative acyl-CoA deh 100.0 9.4E-67 2E-71 507.1 42.7 372 31-408 4-378 (381)
11 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 8.1E-67 1.8E-71 506.2 41.0 368 33-405 2-370 (372)
12 cd01160 LCAD Long chain acyl-C 100.0 1.4E-66 3.1E-71 504.9 41.7 369 35-406 2-371 (372)
13 PTZ00461 isovaleryl-CoA dehydr 100.0 3E-66 6.4E-71 507.6 42.2 373 30-409 35-408 (410)
14 PLN02526 acyl-coenzyme A oxida 100.0 8E-66 1.7E-70 504.3 43.0 375 28-409 25-399 (412)
15 cd01161 VLCAD Very long chain 100.0 1.3E-65 2.9E-70 503.1 41.9 381 21-409 19-407 (409)
16 TIGR03203 pimD_small pimeloyl- 100.0 1.1E-65 2.3E-70 497.5 38.7 366 32-404 4-374 (378)
17 cd01158 SCAD_SBCAD Short chain 100.0 3.4E-65 7.3E-70 495.7 41.3 372 35-408 2-373 (373)
18 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 7.2E-64 1.6E-68 488.8 39.6 371 38-408 5-394 (394)
19 PRK09463 fadE acyl-CoA dehydro 100.0 8.9E-63 1.9E-67 502.7 41.4 366 31-402 79-466 (777)
20 PRK13026 acyl-CoA dehydrogenas 100.0 4.3E-62 9.4E-67 495.7 41.1 366 29-402 76-465 (774)
21 TIGR03204 pimC_large pimeloyl- 100.0 5.4E-61 1.2E-65 467.6 41.6 371 32-408 4-394 (395)
22 cd01153 ACAD_fadE5 Putative ac 100.0 8.1E-61 1.8E-65 468.7 39.5 362 40-406 2-406 (407)
23 COG1960 CaiA Acyl-CoA dehydrog 100.0 1.4E-60 2.9E-65 466.3 39.8 374 34-409 7-389 (393)
24 cd01152 ACAD_fadE6_17_26 Putat 100.0 1.9E-60 4.2E-65 462.7 35.4 365 35-408 2-380 (380)
25 PTZ00456 acyl-CoA dehydrogenas 100.0 1E-59 2.3E-64 475.4 41.3 374 30-407 54-479 (622)
26 KOG0137 Very-long-chain acyl-C 100.0 2.8E-61 6.1E-66 455.7 26.8 397 7-407 52-459 (634)
27 PLN02876 acyl-CoA dehydrogenas 100.0 4.4E-59 9.6E-64 490.8 41.0 376 32-409 402-819 (822)
28 PLN02636 acyl-coenzyme A oxida 100.0 9.3E-59 2E-63 472.7 37.7 369 32-408 61-485 (686)
29 cd01163 DszC Dibenzothiophene 100.0 2.1E-58 4.5E-63 448.3 33.1 356 42-409 2-374 (377)
30 KOG0138 Glutaryl-CoA dehydroge 100.0 3.1E-58 6.8E-63 401.6 28.1 380 21-408 45-426 (432)
31 PLN02312 acyl-CoA oxidase 100.0 1E-56 2.2E-61 456.7 36.5 347 57-408 99-487 (680)
32 cd01154 AidB Proteins involved 100.0 6.7E-56 1.4E-60 434.4 38.5 355 44-408 38-418 (418)
33 cd01159 NcnH Naphthocyclinone 100.0 1.9E-55 4.1E-60 426.3 26.7 347 43-408 3-370 (370)
34 PRK11561 isovaleryl CoA dehydr 100.0 5.3E-52 1.2E-56 410.5 37.1 328 67-408 88-441 (538)
35 cd00567 ACAD Acyl-CoA dehydrog 100.0 1.6E-51 3.4E-56 392.9 36.5 324 35-404 2-327 (327)
36 PTZ00460 acyl-CoA dehydrogenas 100.0 3.3E-50 7.2E-55 407.5 31.4 300 109-408 88-431 (646)
37 PTZ00457 acyl-CoA dehydrogenas 100.0 8.1E-49 1.7E-53 385.3 35.5 292 73-399 58-362 (520)
38 cd01150 AXO Peroxisomal acyl-C 100.0 1.3E-49 2.7E-54 403.9 30.5 315 94-408 80-444 (610)
39 PLN02443 acyl-coenzyme A oxida 100.0 2E-46 4.4E-51 380.4 30.4 293 116-408 99-440 (664)
40 KOG1469 Predicted acyl-CoA deh 100.0 2E-47 4.2E-52 329.2 15.7 335 74-408 36-382 (392)
41 KOG0135 Pristanoyl-CoA/acyl-Co 100.0 3.5E-35 7.5E-40 276.2 20.4 336 70-409 82-465 (661)
42 TIGR02309 HpaB-1 4-hydroxyphen 100.0 7.4E-28 1.6E-32 236.5 25.5 239 128-374 119-391 (477)
43 KOG0136 Acyl-CoA oxidase [Lipi 100.0 1.1E-26 2.3E-31 224.1 21.0 301 109-409 104-449 (670)
44 PF00441 Acyl-CoA_dh_1: Acyl-C 99.9 1.5E-23 3.2E-28 176.8 18.5 150 258-407 1-150 (150)
45 PF02771 Acyl-CoA_dh_N: Acyl-C 99.8 1.6E-19 3.5E-24 144.6 8.1 112 34-147 2-113 (113)
46 PF08028 Acyl-CoA_dh_2: Acyl-C 99.7 3.7E-16 7.9E-21 129.0 13.4 123 273-395 1-133 (134)
47 COG2368 Aromatic ring hydroxyl 99.7 2.1E-15 4.5E-20 142.8 19.9 239 130-373 125-398 (493)
48 TIGR02310 HpaB-2 4-hydroxyphen 99.6 6.1E-14 1.3E-18 137.7 23.7 231 134-370 136-399 (519)
49 PF02770 Acyl-CoA_dh_M: Acyl-C 99.6 4.6E-15 9.9E-20 100.2 6.2 52 151-202 1-52 (52)
50 PF11794 HpaB_N: 4-hydroxyphen 99.1 3.2E-10 6.8E-15 102.3 10.5 120 135-254 124-263 (264)
51 PF03241 HpaB: 4-hydroxyphenyl 97.1 0.0076 1.6E-07 53.1 11.7 71 303-373 43-118 (205)
52 PF14749 Acyl-CoA_ox_N: Acyl-c 90.4 0.23 5E-06 40.0 2.7 33 116-148 92-124 (125)
53 PTZ00457 acyl-CoA dehydrogenas 88.8 6.9 0.00015 39.7 12.3 79 300-379 429-508 (520)
54 KOG0137 Very-long-chain acyl-C 75.1 65 0.0014 32.8 12.5 71 299-369 532-603 (634)
55 PRK09463 fadE acyl-CoA dehydro 24.6 9.2E+02 0.02 26.1 12.7 101 300-408 559-662 (777)
56 PF05284 DUF736: Protein of un 23.7 2E+02 0.0043 22.4 4.9 58 189-248 22-80 (107)
57 PHA02095 hypothetical protein 20.9 63 0.0014 22.8 1.4 15 173-187 25-39 (84)
No 1
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=2.6e-82 Score=563.13 Aligned_cols=363 Identities=40% Similarity=0.678 Sum_probs=352.6
Q ss_pred CCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 015286 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (410)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~ 109 (410)
.++++|+ .+.+.+++|+++.+.|..+++|++..+|+ .+++.+.+.|++++.+|++|||.|.++...+.++|+|++.|
T Consensus 36 ~l~E~e~-~l~~tvrkfa~~~i~Plv~~mD~~~~~~~--~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d 112 (398)
T KOG0139|consen 36 ILSETEQ-MLQKTVRKFAQEEIKPLVREMDRESRYPA--SVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVD 112 (398)
T ss_pred hcCcHHH-HHHHHHHHHHHHhcchHHHhhhhhccCCH--HHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccC
Confidence 4555555 99999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred cchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCC
Q 015286 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 189 (410)
Q Consensus 110 ~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~ 189 (410)
+|++.++.+|+++...+|..||+++||++|+|.+ .|+.+++|++|||++|||...++|+|++++|.|+|||+|.|+||+
T Consensus 113 ~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~ 191 (398)
T KOG0139|consen 113 ASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-TGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNA 191 (398)
T ss_pred ccceeEEEecccccchHHHHhCcHHHHhhhcchh-hccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCC
Confidence 9999999999889999999999999999888885 678899999999999999999999999999999999999999999
Q ss_pred CcCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhhc
Q 015286 190 PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269 (410)
Q Consensus 190 ~~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~ 269 (410)
..|++++|++.+++..+.+++++|+||+++||+++..+.+++|||++.++.++|+||+||++++||+.|.|+.+.+..++
T Consensus 192 ~~A~~~lVfan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln 271 (398)
T KOG0139|consen 192 GEADWFLVFANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLN 271 (398)
T ss_pred cccceEEEEEecChhhccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHhcC
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhHHH
Q 015286 270 LERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVI 349 (410)
Q Consensus 270 ~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~~ak 349 (410)
.+|+.++++++|+++.|+|+++.|+++|.+||++|.++|.+||+||++.+++|++|+++|++++.-+.+.|...+++|+|
T Consensus 272 ~gRIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaRlL~ynaAr~k~~G~pf~keAAMAK 351 (398)
T KOG0139|consen 272 AGRIGIGAQMLGLAQGCFDETIPYAQERLQFGKRLLDFQGLQHQIADMATEIEAARLLVYNAARMKDQGLPFVKEAAMAK 351 (398)
T ss_pred ccceeehhhhhhhhHhHHHhhhHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHH
Q 015286 350 LCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSE 396 (410)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~ 396 (410)
+++++.+..+++.|+|+.||.||+++.|.+|+|||++...|++|+++
T Consensus 352 l~ase~A~~~t~qCiq~lGG~Gyt~d~paek~yRDarI~~IyeGtsn 398 (398)
T KOG0139|consen 352 LYASEVATKTTHQCIQWLGGVGYTKDFPAEKFYRDARIGEIYEGTSN 398 (398)
T ss_pred HhhhhhhhHHHHHHHHHHhcccccccccHHHHhhhceeeeeecCCCC
Confidence 99999999999999999999999999999999999999999999863
No 2
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=2.1e-81 Score=548.51 Aligned_cols=378 Identities=72% Similarity=1.151 Sum_probs=369.0
Q ss_pred CcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccc
Q 015286 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGS 111 (410)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~~s 111 (410)
+++|++.+++.+++|+++++.|.+.++|+.+.|+..+++|+++.++|++|+..|++|||.|+++...++++||+++..+.
T Consensus 41 ~~~e~~~~r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sra~g~ 120 (421)
T KOG0141|consen 41 LSDEQDQLRESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISRASGG 120 (421)
T ss_pred CCHHHHHHHHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHhhcCC
Confidence 56777799999999999999999999999999987789999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCCCc
Q 015286 112 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPV 191 (410)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~~~ 191 (410)
++..+..|++++++.|.+.|+++|+++|+|++.+|+.++++++|||++|||+..++++|++++++|+|||.|.||||++.
T Consensus 121 v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG~~ 200 (421)
T KOG0141|consen 121 VALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITNGPD 200 (421)
T ss_pred cccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEEeCCC--CCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhhc
Q 015286 192 AQTLVVYAKTDIK--AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269 (410)
Q Consensus 192 ad~~~v~a~~~~~--~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~ 269 (410)
||.++|.|.++.. ++.+|+++|+|++..||+...+..+++||||++++++.|+|++||+++++|.++.|+.+++..++
T Consensus 201 advliVyAkTd~~a~~~~hGIt~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkGvYvlMsgLd 280 (421)
T KOG0141|consen 201 ADVLIVYAKTDHSAVPPSHGITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKGVYVLMSGLD 280 (421)
T ss_pred CcEEEEEEecCCCCCCCcCceEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCceEEEEecCCC
Confidence 9999999999876 57789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhHHH
Q 015286 270 LERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVI 349 (410)
Q Consensus 270 ~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~~ak 349 (410)
..|+.+++..+|+++.++|.+..|+++|++||+++++||.+|.++|+|.+.+.++|+++|.++...|.+.-+...++.++
T Consensus 281 ~ERLvla~gplglmqa~~d~~~~Y~~qR~afgk~ig~fQ~~QgklAdmyT~l~a~Rsyvy~va~~~d~g~~~~kdcag~i 360 (421)
T KOG0141|consen 281 LERLVLAAGPLGLMQAALDETFPYAHQRKAFGKKIGHFQLLQGKLADMYTTLCASRSYVYNVARACDAGNVDPKDCAGVI 360 (421)
T ss_pred hhHhhhccCchHHHHHHHHHhhhHHHHHHHhCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhcc
Q 015286 350 LCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 409 (410)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 409 (410)
+|++|.+.+++.+++|++||.||+.++|+.|++||++.+.|..|+++|++..|+|.+.+.
T Consensus 361 l~aaE~~tqVald~iQ~~GGnGYineyp~gr~lrDAklyeIgaGTsEirr~lIgRel~~e 420 (421)
T KOG0141|consen 361 LYAAEKATQVALDAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRLLIGRELNKE 420 (421)
T ss_pred hhHhhhhHHHHHHHHhhccCcccccccchhhhhhhceeeeccCChHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999998764
No 3
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-80 Score=542.22 Aligned_cols=378 Identities=37% Similarity=0.615 Sum_probs=369.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhc
Q 015286 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (410)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~ 108 (410)
+.-++|+|.++++.+++|.++++.|.++++|+.+.||. +++++..++|+.+..+|+.+||.|++..+.+.+.|+|+++
T Consensus 25 sf~L~e~qke~q~~A~kFa~~e~~P~aae~Dk~ge~P~--~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayG 102 (408)
T KOG0140|consen 25 SFGLTEDQKEFQEAARKFAKDEMIPNAAEYDKSGEFPW--EIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYG 102 (408)
T ss_pred ccCcchHHHHHHHHHHHHHHHhhccchhhhcccCCCcH--HHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHcc
Confidence 57788999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecC
Q 015286 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN 188 (410)
Q Consensus 109 ~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~ 188 (410)
|.++...+..|+ ++.++|..+|+++||++||++++....++++++|||++|||+.+++|+|++.+|.|+|||+|.||||
T Consensus 103 Ctg~~~~I~~~~-l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawItg 181 (408)
T KOG0140|consen 103 CTGIQTAISIHN-LAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWITG 181 (408)
T ss_pred chhHHHHHhccc-hhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeeec
Confidence 999999999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCEEEEEEEeCCC---CCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHH
Q 015286 189 GPVAQTLVVYAKTDIK---AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMM 265 (410)
Q Consensus 189 ~~~ad~~~v~a~~~~~---~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~ 265 (410)
+.+|+|++|++|++++ ++.++++.|+|+.++||++......+||.+.+++..|.|+||+||.+++||.++.|+.+.+
T Consensus 182 ~G~anwyfVlaRtd~~pk~p~~Kaft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvAm 261 (408)
T KOG0140|consen 182 AGHANWYFVLARTDPDPKTPAGKAFTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVAM 261 (408)
T ss_pred CCccceEEEEEecCCCCCCCCCcceEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceehh
Confidence 9999999999999986 4567899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhh
Q 015286 266 SGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDC 345 (410)
Q Consensus 266 ~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~ 345 (410)
..++-.|..+++.++|++++++|++++|+.+|++||+||++||.+|++||+|.+.++.+|++.+.+++.+|++......+
T Consensus 262 ~~fd~tRp~vAa~alG~A~r~ld~a~ky~~eRK~FG~~iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~evd~~r~~sy~a 341 (408)
T KOG0140|consen 262 GGFDKTRPNVAAGALGLAQRCLDEATKYALERKAFGTPIANHQAVQFMLADMAINLELARLMTRNAAWEVDNGRRNSYYA 341 (408)
T ss_pred hhccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhCcChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhcc
Q 015286 346 AGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 409 (410)
Q Consensus 346 ~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 409 (410)
+++|.++++.+.+++..++|++||.||..++|+++++||++.++|++|+++|+|..|+|.++..
T Consensus 342 SiAK~fA~D~an~~at~AvQifGG~Gfn~eYpVeklmRDaki~QIyEGTsqiqRlvIsR~ll~~ 405 (408)
T KOG0140|consen 342 SIAKLFATDTANQAATNAVQIFGGNGFNKEYPVEKLMRDAKIYQIYEGTSQIQRLVISRSLLQK 405 (408)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhccCCccccccHHHHHhhhhhhHhhhchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999864
No 4
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=2.1e-68 Score=521.83 Aligned_cols=382 Identities=91% Similarity=1.443 Sum_probs=357.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhc
Q 015286 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (410)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~ 108 (410)
++.+++++..+++.+++|+.+.+.|.+.+.|+.+.+|...++|++|.+.||+++.+|++|||.|+++.+...++|++++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~~ 102 (404)
T PLN02519 23 SLLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRA 102 (404)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHhhh
Confidence 45677888899999999999999999889999888998223799999999999999999999999999999999999999
Q ss_pred ccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecC
Q 015286 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN 188 (410)
Q Consensus 109 ~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~ 188 (410)
|+++++++.+|...+...+..+|+++|+++|+|.+.+|+.++++++|||++|+|...+++++++++|||+|||+|.|+|+
T Consensus 103 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~ 182 (404)
T PLN02519 103 SGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTN 182 (404)
T ss_pred cccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEeecC
Confidence 99999988888655566788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhh
Q 015286 189 GPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGL 268 (410)
Q Consensus 189 ~~~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~ 268 (410)
+.+||+++|.++++++.+..++.+|+||++.|||++.+.|+++|+++++++++.|+||+||++++++..+.|+......+
T Consensus 183 a~~ad~~~v~a~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~~~~~ 262 (404)
T PLN02519 183 GPVAQTLVVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSGL 262 (404)
T ss_pred CCcCCEEEEEEEeCCCCCCCeeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCccHHHHHHHH
Confidence 99999999999987544556789999999999999999999999999999999999999999999999888988777788
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhHH
Q 015286 269 DLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGV 348 (410)
Q Consensus 269 ~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~~a 348 (410)
+..|+.+++.++|+++++++.+++|+++|.+||+|+.++|.+|+++++|.+.++++++++++++..++.+.....++..+
T Consensus 263 ~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~pl~~~~~v~~~la~~~~~l~aar~~~~~aa~~~~~~~~~~~~~~~a 342 (404)
T PLN02519 263 DLERLVLAAGPLGLMQACLDVVLPYVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRSYVYSVARDCDNGKVDRKDCAGV 342 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999998876556778889
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhccC
Q 015286 349 ILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQQ 410 (410)
Q Consensus 349 k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~~ 410 (410)
|+++++.+.+++..+++++||.||+++++++|+|||++...+++|++++++..|++.+++++
T Consensus 343 k~~~~~~a~~~~~~a~~i~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~e~~~~~i~~~~~~~~ 404 (404)
T PLN02519 343 ILCAAERATQVALQAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRMLIGRELFKEE 404 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceecCCChHHHHHHhhhcceeeCCHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999874
No 5
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=1.4e-67 Score=513.89 Aligned_cols=373 Identities=34% Similarity=0.550 Sum_probs=348.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhc
Q 015286 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (410)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~ 108 (410)
+..+++++.++++.+++|+++.+.|.+.+.|+.+.+|. ++|++|.+.||+++ +|++|||.|+++.+...++|++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~-vP~~~GG~g~~~~~~~~v~e~l~~~ 86 (386)
T cd01151 10 DDLLTEEERAIRDTAREFCQEELAPRVLEAYREEKFDR--KIIEEMGELGLLGA-TIKGYGCAGLSSVAYGLIAREVERV 86 (386)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCccHHHHHHhCCCCH--HHHHHHHHCCCCcc-CccccCCCCCCHHHHHHHHHHHHhh
Confidence 34456677799999999999999998888888888999 99999999999999 9999999999999999999999999
Q ss_pred ccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecC
Q 015286 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN 188 (410)
Q Consensus 109 ~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~ 188 (410)
|+++++.+.+|..++...+..+|+++|+++|++++++|+.++++++|||++|||...+.|+|++++|||+|||+|.|+|+
T Consensus 87 ~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~ 166 (386)
T cd01151 87 DSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITN 166 (386)
T ss_pred ChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecC
Confidence 99998877776545666788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhh
Q 015286 189 GPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGL 268 (410)
Q Consensus 189 ~~~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~ 268 (410)
+..||+++|.++++++ .++.+|+||++.|||++.+.|+++|+++++++++.|+||+||++++++. +.|+......+
T Consensus 167 ~~~Ad~~lv~ar~~~~---~~~~~flVp~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~-~~g~~~~~~~~ 242 (386)
T cd01151 167 SPIADVFVVWARNDET---GKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPG-AEGLRGPFKCL 242 (386)
T ss_pred CCcCCEEEEEEEECCC---CcEEEEEEcCCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCc-cccHHHHHHHH
Confidence 9999999999998642 3678999999999999999999999999999999999999999999986 46777777788
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhHH
Q 015286 269 DLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGV 348 (410)
Q Consensus 269 ~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~~a 348 (410)
...|+.+++.++|+++++++.+++|+++|.+||+|++++|.+|++|++|.+.++++|++++.+++.+|.+.....+.+++
T Consensus 243 ~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~eaar~l~~~a~~~~d~~~~~~~~~~~~ 322 (386)
T cd01151 243 NNARYGIAWGALGAAEDCYHTARQYVLDRKQFGRPLAAFQLVQKKLADMLTEIALGLLACLRVGRLKDQGKATPEQISLL 322 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999998876566778999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhc
Q 015286 349 ILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 349 k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
|+++++.+.++++.++|++||.||+++++++|+|||++...+++|++++++..|++.+++
T Consensus 323 K~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~~~~~~~i~~~~l~ 382 (386)
T cd01151 323 KRNNCGKALEIARTAREMLGGNGISDEYHIIRHMVNLESVNTYEGTHDIHALILGRAITG 382 (386)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHhhhcceecCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999875
No 6
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=2.5e-67 Score=511.02 Aligned_cols=374 Identities=72% Similarity=1.177 Sum_probs=352.5
Q ss_pred cHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccch
Q 015286 33 DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSV 112 (410)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~~s~ 112 (410)
+++++.+++.+++|+.+.+.+.+.+.|+.+.+|. +.|+.|.+.||+++.+|++|||.|+++.+...++|+|+++|+++
T Consensus 3 ~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~--~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~ 80 (376)
T cd01156 3 DDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFPR--DLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSV 80 (376)
T ss_pred CHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCH--HHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhH
Confidence 4667799999999999999998888888888999 99999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCCCcC
Q 015286 113 GLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVA 192 (410)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~~~a 192 (410)
+|.+..|...+...|..+|+++|+++|++++.+|+.++++++|||.+|+|...+++++++++|||+|||+|.|+||+..|
T Consensus 81 ~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a 160 (376)
T cd01156 81 ALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDA 160 (376)
T ss_pred HHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcC
Confidence 99877776556667889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhhcHHH
Q 015286 193 QTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLER 272 (410)
Q Consensus 193 d~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~~~r 272 (410)
|+++|.++++++++..++.+|+||++.|||++.+.|+++|++++++++|.|+||+||++++++..+.|+......+...|
T Consensus 161 ~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r 240 (376)
T cd01156 161 DTLVVYAKTDPSAGAHGITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYER 240 (376)
T ss_pred CEEEEEEEeCCCCCCCceEEEEEcCCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHHHHhhHH
Confidence 99999999875544567889999999999999999999999999999999999999999999999999888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhHHHHHH
Q 015286 273 LVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCA 352 (410)
Q Consensus 273 l~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~~ak~~~ 352 (410)
+.+++.++|+++++++.+++|+++|++||+|+.++|.+|+++++|.++++++|++++.+++.+|.+.......+.+|+++
T Consensus 241 ~~~aa~~lG~a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~k~~~ 320 (376)
T cd01156 241 LVLAGGPIGIMQAALDVAIPYAHQRKQFGQPIGEFQLVQGKLADMYTRLNASRSYLYTVAKACDRGNMDPKDAAGVILYA 320 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcCcchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988765556778899999
Q ss_pred HHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhc
Q 015286 353 AERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 353 ~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
++.+.++++.+++++||.||+++++++|+|||++...+++|++++++..|++.++|
T Consensus 321 ~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rda~~~~~~~gt~~~~~~~i~~~~~~ 376 (376)
T cd01156 321 AEKATQVALDAIQILGGNGYINDYPTGRLLRDAKLYEIGAGTSEIRRMVIGRELFK 376 (376)
T ss_pred HHHHHHHHHHHHHHhcCcccccCCHHHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999998875
No 7
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.3e-67 Score=509.92 Aligned_cols=374 Identities=28% Similarity=0.470 Sum_probs=344.3
Q ss_pred CCcHHHHHHHHHHHHHHHhcc-CcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 015286 31 LFDDTQLQFKESVGQFARENI-APRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (410)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~ 109 (410)
.++++++.+++.+++|+++++ .+...+.|+.+.+|. ++|++|.+.||+++.+|++|||.|+++.+++.++|+++++|
T Consensus 4 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~~ 81 (380)
T PRK03354 4 NLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPE--RFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLG 81 (380)
T ss_pred CCCHHHHHHHHHHHHHHHhccCChhHHHHHhhCCCCH--HHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcC
Confidence 356677799999999999886 566677888889999 99999999999999999999999999999999999999999
Q ss_pred cchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCC
Q 015286 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 189 (410)
Q Consensus 110 ~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~ 189 (410)
+++++++.++. ....+..+++++|+++|++++.+|+.++++++|||+.|||...+.|++++++|||+|||+|.|+|++
T Consensus 82 ~s~~~~~~~~~--~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~~ 159 (380)
T PRK03354 82 APTYVLYQLPG--GFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSS 159 (380)
T ss_pred cchHHHHHhcc--cHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEcCC
Confidence 99887665553 2456788899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhhc
Q 015286 190 PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269 (410)
Q Consensus 190 ~~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~ 269 (410)
.+|||++|.++++.+++..++.+|+||++.|||++. +|+++|++++++++|.|+||+||+++++|.++.|+......+.
T Consensus 160 ~~ad~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~~~ 238 (380)
T PRK03354 160 AYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVT-KLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFD 238 (380)
T ss_pred CcCCEEEEEEEcCCCCCCCceeEEEEECCCCceEec-cccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHHHHHHH
Confidence 999999999998544344567889999999999985 7999999999999999999999999999998888877666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhHHH
Q 015286 270 LERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVI 349 (410)
Q Consensus 270 ~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~~ak 349 (410)
..|+.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.+.+++++++++++++..+.+.......+++|
T Consensus 239 ~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~~~aK 318 (380)
T PRK03354 239 HERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCK 318 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999998887765567789999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhcc
Q 015286 350 LCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 409 (410)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 409 (410)
+++++.+.++++.+++++||.||+++++++|+|||++...+++|++++++..|++.++++
T Consensus 319 ~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 378 (380)
T PRK03354 319 YFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378 (380)
T ss_pred HHHHHHHHHHHHHHHHHhcCceecCCChHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999998753
No 8
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=2.9e-67 Score=510.73 Aligned_cols=374 Identities=37% Similarity=0.564 Sum_probs=347.8
Q ss_pred cHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccch
Q 015286 33 DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSV 112 (410)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~~s~ 112 (410)
+++++.+++.+++|+.+.+.|.+.+.|+.+.+|. ++|++|.+.||+++.+|++|||.|+++.+...++|++++.|+++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~ 79 (378)
T cd01157 2 TEQQKEFQETARKFAREEIIPVAAEYDKSGEYPW--PLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGV 79 (378)
T ss_pred CHHHHHHHHHHHHHHHHhcccchHHHHhhCCCCH--HHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHH
Confidence 4667799999999999999998888999889999 99999999999999999999999999999999999999999998
Q ss_pred hHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCCCcC
Q 015286 113 GLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVA 192 (410)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~~~a 192 (410)
++.+..+. ++...+..+|+++||++||+++.+|+.+.++++|||+.|+|...+.+++++++|||+|||+|.|+|++.+|
T Consensus 80 ~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a 158 (378)
T cd01157 80 QTAIEANS-LGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKA 158 (378)
T ss_pred HHHHHhhh-hhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccC
Confidence 87665554 55556677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEeCCCCC---CCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhhc
Q 015286 193 QTLVVYAKTDIKAG---SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269 (410)
Q Consensus 193 d~~~v~a~~~~~~~---~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~ 269 (410)
|+++|.++++++.+ ..++.+|+||++.|||++.+.|+++|+++++++++.|+||+||.+++++.++.|+......+.
T Consensus 159 d~~lv~a~~~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~~~ 238 (378)
T cd01157 159 NWYFLLARSDPDPKCPASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFD 238 (378)
T ss_pred CEEEEEEEeCCcccCCCCCceEEEEEcCCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHHHh
Confidence 99999999864322 356889999999999999999999999999999999999999999999988889888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhHHH
Q 015286 270 LERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVI 349 (410)
Q Consensus 270 ~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~~ak 349 (410)
..|+.+++.++|+++++++.+++|+++|.+||+|+.++|.+|+++++|.++++++|++++.+++.+|.+.......+++|
T Consensus 239 ~~r~~~aa~~lG~a~~~l~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~aK 318 (378)
T cd01157 239 KTRPPVAAGAVGLAQRALDEATKYALERKTFGKLIAEHQAVSFMLADMAMKVELARLAYQRAAWEVDSGRRNTYYASIAK 318 (378)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999998887654456678899
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhcc
Q 015286 350 LCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 409 (410)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 409 (410)
+++++.+.++++.+++++||.||+++++++|+|||++.+.+++|++++++.+|++.++.+
T Consensus 319 ~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 378 (378)
T cd01157 319 AFAADIANQLATDAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISREHLGK 378 (378)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHHhhceecCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999998764
No 9
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=8.4e-67 Score=506.59 Aligned_cols=373 Identities=36% Similarity=0.580 Sum_probs=350.5
Q ss_pred cHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccch
Q 015286 33 DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSV 112 (410)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~~s~ 112 (410)
+|++.++++.+++|+.+++.|.+.+.|+.+.+|. +.|++|.+.||+++.+|++|||.|.++.+.+.++|+|+++|+++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~ 79 (375)
T cd01162 2 NEEQRAIQEVARAFAAKEMAPHAADWDQKKHFPV--DVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVST 79 (375)
T ss_pred CHHHHHHHHHHHHHHHHhCCcchhhHHhhCCCCH--HHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhH
Confidence 4566699999999999999999888999899999 99999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCCCcC
Q 015286 113 GLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVA 192 (410)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~~~a 192 (410)
++.+.+|. ++..++..+|+++|+++|++++.+|+.++++++|||++|+|...++++++++++||+|||+|.|+|++.+|
T Consensus 80 ~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a 158 (375)
T cd01162 80 AAYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDS 158 (375)
T ss_pred HHHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCC
Confidence 98888886 66778888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhhcHHH
Q 015286 193 QTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLER 272 (410)
Q Consensus 193 d~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~~~r 272 (410)
|+++|.++++++ +..++.+|+||++.|||++.+.|+++|++++++++|.||||+||.++++|..+.|+......+...|
T Consensus 159 d~~~v~a~~~~~-~~~~~~~~lv~~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r 237 (375)
T cd01162 159 DVYVVMARTGGE-GPKGISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGR 237 (375)
T ss_pred CEEEEEEEecCC-CCCceEEEEEeCCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHHHHHHHH
Confidence 999999997643 3456889999999999999999999999999999999999999999999999889888777888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-ChhhhhHHHHH
Q 015286 273 LVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV-DPKDCAGVILC 351 (410)
Q Consensus 273 l~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~-~~~~~~~ak~~ 351 (410)
+.+++.++|+++++++.+++|+++|++||+||.++|.+|+++++|.+++++++++++.+++.++.+.+ .....+++|++
T Consensus 238 ~~~aa~~lG~a~~al~~~~~~a~~R~~fg~~l~~~~~vq~~la~~~~~l~~a~~~~~~a~~~~~~~~~~~~~~~~~ak~~ 317 (375)
T cd01162 238 LNIASCSLGAAQAALDLARAYLEERKQFGKPLADFQALQFKLADMATELVASRLMVRRAASALDRGDPDAVKLCAMAKRF 317 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988743 34567889999
Q ss_pred HHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhcc
Q 015286 352 AAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 409 (410)
Q Consensus 352 ~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 409 (410)
+++.+.++++.++++|||.||.++++++|+|||++...+++|++++++.++++.++++
T Consensus 318 ~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~~~~~~~~~ 375 (375)
T cd01162 318 ATDECFDVANQALQLHGGYGYLKDYPVEQYVRDLRVHQILEGTNEIMRLIIARALLTR 375 (375)
T ss_pred HHHHHHHHHHHHHHHhcccccccCChHHHHHHHhhcceeecCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999998763
No 10
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=9.4e-67 Score=507.09 Aligned_cols=372 Identities=30% Similarity=0.478 Sum_probs=342.8
Q ss_pred CCcHHHHHHHHHHHHHHHhccC-cchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 015286 31 LFDDTQLQFKESVGQFARENIA-PRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (410)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~ 109 (410)
.+++|+..+++.+++|+.+.+. +.+.++|+.+.+|+ ++|++|++.||+++.+|++|||.|.++.+.+.++|++++.|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~~ 81 (381)
T PRK12341 4 SLTEEQELLLASIRELITRNFPEEYFRTCDENGTYPR--EFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSKCG 81 (381)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCchhHHHHHHhCCCCH--HHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhhcC
Confidence 3456777999999999998885 56778898899999 99999999999999999999999999999999999999999
Q ss_pred cchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhh-hcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecC
Q 015286 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKL-ISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN 188 (410)
Q Consensus 110 ~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l-~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~ 188 (410)
.+ ++++ .+. ++...+..+|+++||++|++++ .+|+.++++++|||+.|||...+++++++++|||+|||+|.|+||
T Consensus 82 ~~-~~~~-~~~-~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is~ 158 (381)
T PRK12341 82 AP-AFLI-TNG-QCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFITG 158 (381)
T ss_pred hh-HHHH-hhh-hhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEcC
Confidence 88 4443 232 4555678899999999999998 599988999999999999999999999999999999999999999
Q ss_pred CCcCCEEEEEEEeCCCC-CCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhh
Q 015286 189 GPVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG 267 (410)
Q Consensus 189 ~~~ad~~~v~a~~~~~~-~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~ 267 (410)
+.+||+++|.++++++. +..++.+|+||++.|||++ .+|+++|+++++++.|+|+||+||++++||.++.|+......
T Consensus 159 ~~~Ad~~~v~a~~~~~~~~~~~~~~~lV~~~~~gv~~-~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~ 237 (381)
T PRK12341 159 AKEYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKI-NPLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMYN 237 (381)
T ss_pred CccCCEEEEEEEcCCCCCCCCceEEEEEeCCCCceee-cccccccCCCCCceEEEECcEEecHHHcCCCCChHHHHHHHH
Confidence 99999999999986443 2346889999999999999 579999999999999999999999999999999998877778
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhH
Q 015286 268 LDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAG 347 (410)
Q Consensus 268 ~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~~ 347 (410)
++..|+.++++++|+++++++.+++|+++|++||+|+.++|.+|++|+++.++++++|++++++++.++++.+.....++
T Consensus 238 ~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~~~aar~~~~~a~~~~d~~~~~~~~~~~ 317 (381)
T PRK12341 238 FEMERLINAARSLGFAECAFEDAARYANQRIQFGKPIGHNQLIQEKLTLMAIKIENMRNMVYKVAWQADNGQSLRTSAAL 317 (381)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999998887666677899
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhc
Q 015286 348 VILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 348 ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
+|+++++.+.++++.+++++||.||.++++++|+|||++...+++|++++++.+|++.+++
T Consensus 318 aK~~~~~~a~~v~~~~~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~g~~~~~~~~i~~~~~~ 378 (381)
T PRK12341 318 AKLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYIAGRQILK 378 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHhhcceecCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999875
No 11
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=8.1e-67 Score=506.16 Aligned_cols=368 Identities=31% Similarity=0.503 Sum_probs=342.9
Q ss_pred cHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccch
Q 015286 33 DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSV 112 (410)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~~s~ 112 (410)
++++..+++.+++|+.+.+.|...+.|+.+.+|. ++|++|.+.||+++.+|++|||.|+++.+.+.++|++++.|+++
T Consensus 2 t~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~~~--~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~ 79 (372)
T TIGR03207 2 NEDLQALADTARRFARERIAPGFKERDKTRVLDR--ELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSM 79 (372)
T ss_pred CHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCH--HHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccH
Confidence 4566699999999999999998888888889999 99999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCCCcC
Q 015286 113 GLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVA 192 (410)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~~~a 192 (410)
++....+. ++...+..+|+++|+++|++++.+|+.++++++|||+.|||..++.+++++++|||+|||+|.|+|++.+|
T Consensus 80 ~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~a 158 (372)
T TIGR03207 80 SYVNLLAS-LNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQA 158 (372)
T ss_pred HHHHHhhh-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcC
Confidence 87654443 55667888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEeCCC-CCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhhcHH
Q 015286 193 QTLVVYAKTDIK-AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLE 271 (410)
Q Consensus 193 d~~~v~a~~~~~-~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~~~ 271 (410)
|+++|+++++++ .+..++.+|+||++.|||++ .+|+++|++++++++|.|+||+||++++++..+.|+......++..
T Consensus 159 d~~lv~a~~~~~~~~~~~~~~~lVp~~~~gv~~-~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~ 237 (372)
T TIGR03207 159 DAAVVFARTGSEAEGARGISAFLVPMDLPGITR-NRFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFS 237 (372)
T ss_pred CEEEEEEEcCCCCCCCCceEEEEEcCCCCCeec-CcchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHHHHHHH
Confidence 999999998643 23456889999999999997 4799999999999999999999999999999999988888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhHHHHH
Q 015286 272 RLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILC 351 (410)
Q Consensus 272 rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~~ak~~ 351 (410)
|+.++++++|+++++++.+++|+++|++||+|+.++|.||+++++|.+.++++|++++.+++.++.+.+.....+++|++
T Consensus 238 r~~~a~~~~G~a~~al~~a~~~~~~R~~fg~~i~~~q~v~~~la~~~~~~~~ar~l~~~aa~~~~~~~~~~~~~~~aK~~ 317 (372)
T TIGR03207 238 RALIGLQVLAVARAALDETWRYVAERQAFGKPLSAFQGVSHPLADAETQVEAARLLCLQTLWLKDHGLPHTSEAAMCKWW 317 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888776556678899999
Q ss_pred HHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHH
Q 015286 352 AAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRA 405 (410)
Q Consensus 352 ~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~ 405 (410)
+++.+.++++.++|++||.||.++ +++|+|||++...+++|++++++.+|++.
T Consensus 318 ~~~~a~~v~~~a~~v~Gg~g~~~~-~l~r~~rd~~~~~i~~Gt~~~~~~~i~~~ 370 (372)
T TIGR03207 318 APKLAYDVIHQCLLTHGHGGYDRG-DMEQRLRDVLGFQIGDGTAQIMKTIIARH 370 (372)
T ss_pred HHHHHHHHHHHHHHHhcCCcCCCc-hHHHHHhHhhheeecCCHHHHHHHHHhhc
Confidence 999999999999999999999999 99999999999999999999999999874
No 12
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=1.4e-66 Score=504.94 Aligned_cols=369 Identities=36% Similarity=0.677 Sum_probs=345.2
Q ss_pred HHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccchhH
Q 015286 35 TQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGL 114 (410)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~~s~~~ 114 (410)
++.++++.+++|+.+.+.|.+.++|+.+.+|+ ++|++|++.||+++.+|++|||.|+++.+...++|++++.+.+ ++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~~ 78 (372)
T cd01160 2 EHDAFRDVVRRFFAKEVAPFHHEWEKAGEVPR--EVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS-GP 78 (372)
T ss_pred hHHHHHHHHHHHHHHhCchhHHHHHhhCCCCH--HHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch-HH
Confidence 55699999999999999998888998889999 9999999999999999999999999999999999999996544 66
Q ss_pred HHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCCCcCCE
Q 015286 115 SYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQT 194 (410)
Q Consensus 115 ~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~~~ad~ 194 (410)
++.+|...+..++..+++++|+++|++++.+|+.++++++|||++|||...+.|+++++++||+|||+|.|+||+.+||+
T Consensus 79 ~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~ 158 (372)
T cd01160 79 GLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADV 158 (372)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccCE
Confidence 77777545667788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCC-CCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhhcHHHH
Q 015286 195 LVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERL 273 (410)
Q Consensus 195 ~~v~a~~~~~~-~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~~~rl 273 (410)
++|.++++++. +..++.+|+||++.|||++.++|+++|++++++++|.|+||+||++++||.++.|+......+...|+
T Consensus 159 ~~v~a~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~~~ 238 (372)
T cd01160 159 VIVVARTGGEARGAGGISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQERL 238 (372)
T ss_pred EEEEEEeCCCCCCCCceEEEEEeCCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHHHH
Confidence 99999987542 34578999999999999998899999999999999999999999999999998898888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhHHHHHHH
Q 015286 274 VLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAA 353 (410)
Q Consensus 274 ~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~~ak~~~~ 353 (410)
.+++.++|+++++++.+++|+++|++||+|+.++|.+|++|+++.+++++++++++.+++..+.+......++++|++++
T Consensus 239 ~~aa~~lG~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~~~~~~~~~~~~~aK~~~~ 318 (372)
T cd01160 239 LIAAGALAAAEFMLEETRNYVKQRKAFGKTLAQLQVVRHKIAELATKVAVTRAFLDNCAWRHEQGRLDVAEASMAKYWAT 318 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988877655677889999999
Q ss_pred HHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHh
Q 015286 354 ERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRAL 406 (410)
Q Consensus 354 ~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~ 406 (410)
+.+.++++.++++|||.||+++++++|+|||++...+++|++++++.+|++.+
T Consensus 319 ~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~gt~~~~~~~i~~~~ 371 (372)
T cd01160 319 ELQNRVAYECVQLHGGWGYMREYPIARAYRDARVQPIYGGTTEIMKELISRQM 371 (372)
T ss_pred HHHHHHHHHHHHHhcCceecCCCHHHHHHHHhhcccccCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999976
No 13
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=3e-66 Score=507.61 Aligned_cols=373 Identities=40% Similarity=0.680 Sum_probs=347.2
Q ss_pred CCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 015286 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (410)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~ 109 (410)
..+++++..+++.+++|+.+.+.|.+.+.|+.+.+|. ++|+.|.+.||+++.+|++|||.|+++.+...++|++++.|
T Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~--~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~ 112 (410)
T PTZ00461 35 YNPTPEHAALRETVAKFSREVVDKHAREDDINMHFNR--DLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYD 112 (410)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCH--HHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhC
Confidence 3456777799999999999999999888898889999 99999999999999999999999999999999999999999
Q ss_pred cchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCC-eEEEeeeeeeecC
Q 015286 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDG-GYIINGNKMWCTN 188 (410)
Q Consensus 110 ~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~-g~~lnG~k~~~s~ 188 (410)
+++++.+..|..++...+..+++++|+++|++.+.+|+.++++++|||++|+|...+.|+++++++ ||+|||+|.|+||
T Consensus 113 ~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~ 192 (410)
T PTZ00461 113 PGFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITN 192 (410)
T ss_pred chHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECC
Confidence 988877766654456677889999999999999999999999999999999999999999999865 7999999999999
Q ss_pred CCcCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhh
Q 015286 189 GPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGL 268 (410)
Q Consensus 189 ~~~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~ 268 (410)
+..||+++|.+++++ ++.+|+||++.|||++.+.|+++|+++++++++.|+||+||++++|+.++.|+......+
T Consensus 193 a~~Ad~~lv~a~~~~-----~~~~flVp~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~~~~~~ 267 (410)
T PTZ00461 193 GTVADVFLIYAKVDG-----KITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRNL 267 (410)
T ss_pred CccCCEEEEEEEeCC-----ceEEEEEeCCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHHHHHHH
Confidence 999999999999742 478999999999999999999999999999999999999999999999998988777788
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhHH
Q 015286 269 DLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGV 348 (410)
Q Consensus 269 ~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~~a 348 (410)
...|+.+++.++|+++++++.+++|+++|++||+|+.++|.+|++|+++.+.++++|++++.+++.++.+.......+++
T Consensus 268 ~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~~~~~~~~~a 347 (410)
T PTZ00461 268 ELERVTLAAMAVGIAERSVELMTSYASERKAFGKPISNFGQIQRYIAEGYADTEAAKALVYSVSHNVHPGNKNRLGSDAA 347 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCcCHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999998887765455677889
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhcc
Q 015286 349 ILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 409 (410)
Q Consensus 349 k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 409 (410)
|.++++.+.++++.++|++||.||+++++++|+|||++.+.+.+|++++++..|++.++++
T Consensus 348 K~~a~~~a~~v~~~a~qv~Gg~G~~~~~~l~r~~Rda~~~~i~~Gt~e~~~~~i~~~~~~~ 408 (410)
T PTZ00461 348 KLFATPIAKKVADSAIQVMGGMGYSRDMPVERLWRDAKLLEIGGGTIEAHHKNITKDLLKG 408 (410)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHHhhheeccCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999988764
No 14
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=8e-66 Score=504.28 Aligned_cols=375 Identities=27% Similarity=0.463 Sum_probs=345.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHh
Q 015286 28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR 107 (410)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~ 107 (410)
.+..+++++..+++.+++|+.+++.|...+.|+...+|. ++|++|.+.||+++.+ ++|||.|+++.+.+.++|++++
T Consensus 25 ~~~~~t~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~p~--~~~~~l~~~G~~~~~v-~~~GG~G~~~~~~~~~~e~la~ 101 (412)
T PLN02526 25 FDDLLTPEEQALRKRVRECMEKEVAPIMTEYWEKAEFPF--HIIPKLGSLGIAGGTI-KGYGCPGLSITASAIATAEVAR 101 (412)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcccchHHHHHhCCCCH--HHHHHHHHCCCCcCcc-cccCCCCcCHHHHHHHHHHHHh
Confidence 445456677799999999999999888777777778998 9999999999999999 9999999999999999999999
Q ss_pred cccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeec
Q 015286 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT 187 (410)
Q Consensus 108 ~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s 187 (410)
.|+++++.+..|..++...+..+|+++|+++|++++.+|+.++++++|||+.|+|...+.|++++++|||+|||+|.|+|
T Consensus 102 ~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~gg~~lnG~K~~vs 181 (412)
T PLN02526 102 VDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIG 181 (412)
T ss_pred hCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEEEEeeec
Confidence 99998776766764566678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhh
Q 015286 188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG 267 (410)
Q Consensus 188 ~~~~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~ 267 (410)
|+..||+++|.++++++ .++.+|+||++.|||++.+.|+++|++++++++|.|+||+||++++++..+ ++......
T Consensus 182 ~~~~Ad~~lv~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp~~~~l~~~~-~~~~~~~~ 257 (412)
T PLN02526 182 NSTFADVLVIFARNTTT---NQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVPDEDRLPGVN-SFQDTNKV 257 (412)
T ss_pred CCCccCEEEEEEEeCCC---CCeEEEEEcCCCCCeEcCCCCCccCcCCCCeeEEEEeeEEECHHHhCCCcc-cHHHHHHH
Confidence 99999999999998532 357899999999999999999999999999999999999999999997653 66666777
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhH
Q 015286 268 LDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAG 347 (410)
Q Consensus 268 ~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~~ 347 (410)
+...|+.+++.++|+++++++.+++|+++|.+||+||.++|.+|+++++|.++++++|++++++++.+|.+.+.....++
T Consensus 258 ~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~ 337 (412)
T PLN02526 258 LAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQEKLVRMLGNIQAMFLVGWRLCKLYESGKMTPGHASL 337 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999998876555667889
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhcc
Q 015286 348 VILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 409 (410)
Q Consensus 348 ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 409 (410)
+|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|++++++..|+|.+++.
T Consensus 338 aK~~a~~~a~~v~~~a~~~~Gg~G~~~~~~l~r~~RD~~~~~~~~G~~ev~~~~i~~~~l~~ 399 (412)
T PLN02526 338 GKAWITKKARETVALGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINALVTGREITGI 399 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccCcCHHHHHHhcccceEecCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999764
No 15
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=1.3e-65 Score=503.09 Aligned_cols=381 Identities=34% Similarity=0.552 Sum_probs=348.3
Q ss_pred cCCCcCCCCCCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHH
Q 015286 21 HSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCI 100 (410)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~ 100 (410)
||+.++ .-+++++..+++.+++|+.+.+.|. ++|+.+.+|. ++|++|.+.||+++.+|++|||.|+++.+...
T Consensus 19 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~~~--~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~ 91 (409)
T cd01161 19 YPSVLT---EEQTEELNMLVGPVEKFFEEVNDPA--KNDQLEKIPR--KTLTQLKELGLFGLQVPEEYGGLGLNNTQYAR 91 (409)
T ss_pred CccccC---ccCCHHHHHHHHHHHHHHHHhCCch--hhccccCCCH--HHHHHHHhCCCCCCCCChhhCCCCCCHHHHHH
Confidence 555444 4456777799999999999998875 4577778998 99999999999999999999999999999999
Q ss_pred HHHHHHhcccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEe--CCeEE
Q 015286 101 AMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYI 178 (410)
Q Consensus 101 v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~--~~g~~ 178 (410)
++|++++ |+++++.+..|...+...+..+|+++|+++|++++.+|+.++++++|||++|+|...++++++++ ++||+
T Consensus 92 v~e~l~~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~ 170 (409)
T cd01161 92 LAEIVGM-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYV 170 (409)
T ss_pred HHHHHhh-ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEE
Confidence 9999999 99999888777645555677899999999999999999999999999999999999999999984 55799
Q ss_pred EeeeeeeecCCCcCCEEEEEEEeCC--CCC--CCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcc
Q 015286 179 INGNKMWCTNGPVAQTLVVYAKTDI--KAG--SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL 254 (410)
Q Consensus 179 lnG~k~~~s~~~~ad~~~v~a~~~~--~~~--~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~l 254 (410)
|||+|.|+||+.+||+++|.++++. ..+ ..++.+|+||++.|||++.+.|+++|++++++++|.|+||+||+++++
T Consensus 171 l~G~K~~vs~~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp~~~~gv~~~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~l 250 (409)
T cd01161 171 LNGSKIWITNGGIADIFTVFAKTEVKDATGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVL 250 (409)
T ss_pred EEeEEEeecCCCcCCEEEEEEEcCCCCCCCCCCCceEEEEEeCCCCCcccCCcccccCCCCCCceEEEeccEEECHHHcC
Confidence 9999999999999999999999752 112 256889999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015286 255 GQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARD 334 (410)
Q Consensus 255 g~~~~g~~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~ 334 (410)
|..+.|+......+...|+.+++.++|+++++++.+++|+++|++||+|+.++|.+|++++++.+.++++|++++.+++.
T Consensus 251 g~~g~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~l~~~q~vq~~la~~~~~~~aar~l~~~a~~~ 330 (409)
T cd01161 251 GEVGDGFKVAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGKKIHEFGLIQEKLANMAILQYATESMAYMTSGN 330 (409)
T ss_pred CCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCC--CChhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhcc
Q 015286 335 CDNGK--VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 409 (410)
Q Consensus 335 ~d~~~--~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 409 (410)
++.+. +....++++|+++++.+.++++.+++++||.||.++++++|+|||++...+++|++++++.+|++.+++.
T Consensus 331 ~d~~~~~~~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~ia~~~l~~ 407 (409)
T cd01161 331 MDRGLKAEYQIEAAISKVFASEAAWLVVDEAIQIHGGMGFMREYGVERVLRDLRIFRIFEGTNEILRLFIALTGLQH 407 (409)
T ss_pred HHCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHhhhcceeecCHHHHHHHHHHHHHhhh
Confidence 88775 3456789999999999999999999999999999999999999999999999999999999999998763
No 16
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=1.1e-65 Score=497.55 Aligned_cols=366 Identities=24% Similarity=0.374 Sum_probs=330.7
Q ss_pred CcHHHHHHHHHHHHHHHhccCcchh--hhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 015286 32 FDDTQLQFKESVGQFARENIAPRAA--NIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (410)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~ 109 (410)
+++|+..+++.+++|+.+.+.+... ..|+.+.||. ++|++|.+.||+++.+|++|||.|+++.+.+.++|++++.+
T Consensus 4 ~~~eq~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~~ 81 (378)
T TIGR03203 4 LSEEQRLLKESVEGLLKTSYDFDSRKKYQKEKGGWSK--AVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKAL 81 (378)
T ss_pred CCHHHHHHHHHHHHHHHhhCCHHHHHHHHhccCCCCH--HHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhCcc
Confidence 4677779999999999998876533 3567788999 99999999999999999999999999999999999999987
Q ss_pred cchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCC
Q 015286 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 189 (410)
Q Consensus 110 ~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~ 189 (410)
.+... +... .++..++..+|+++||++|||++++|+.++++++|||++|||...+.|++++++|||+|||+|.|||++
T Consensus 82 ~~~~~-~~~~-~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a 159 (378)
T TIGR03203 82 VLEPY-LATV-VIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNG 159 (378)
T ss_pred cchHH-HHHH-HHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCC
Confidence 54332 2222 244567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCEEEEEEEeCCCC-CCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhh
Q 015286 190 PVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGL 268 (410)
Q Consensus 190 ~~ad~~~v~a~~~~~~-~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~ 268 (410)
..||+++|.++++++. +..++++|+||++.|||++.+.+.++|+ .+++|.||||+||+++++|.+++|+..+...+
T Consensus 160 ~~Ad~~lv~ar~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~g~---~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~~l 236 (378)
T TIGR03203 160 ETADTLIVTARTKGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGL---HAADITFTGVVVGADAAIGDPENALPLIERVV 236 (378)
T ss_pred ccCCEEEEEEecCCCCCCCCceEEEEEECCCCCceeccccccCCC---ceeeEEECCCcccHHhhcCCcchHHHHHHHHH
Confidence 9999999999986432 4467899999999999999766666665 46899999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--CChhhhh
Q 015286 269 DLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK--VDPKDCA 346 (410)
Q Consensus 269 ~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~--~~~~~~~ 346 (410)
+..|+.+++.++|+++++++.+++|+++|+|||+||++||.||++|++|.+.++++|++++.+++..+.+. +....++
T Consensus 237 ~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qFG~pi~~~Q~vq~~lAdm~~~~e~ar~l~~~aa~~~~~~~~~~~~~~~a 316 (378)
T TIGR03203 237 DDARAALCAEAVGLMDESLKTTVEYIKTRKQFGVPIGSFQVLQHRAADMFVAVEQARSMAMFATMASDFDDAKERANAIA 316 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998877532 3456789
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHH
Q 015286 347 GVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGR 404 (410)
Q Consensus 347 ~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~ 404 (410)
++|+++++.+.++++.++|+|||.||+++++++++|||++.+.+.+|++++++..|++
T Consensus 317 ~aK~~a~e~a~~va~~aiqi~Gg~G~t~e~~~~~~~r~a~~~~~~~G~~~~~~~~~~~ 374 (378)
T TIGR03203 317 AAKVQIGKSLKFVGQQSIQLHGGIGMTMEAKIGHYFKRLTMIEHTFGDTDFHLSRVSA 374 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceeecccchHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987
No 17
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=3.4e-65 Score=495.74 Aligned_cols=372 Identities=45% Similarity=0.737 Sum_probs=351.5
Q ss_pred HHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccchhH
Q 015286 35 TQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGL 114 (410)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~~s~~~ 114 (410)
++.++++.+++|+.+.+.+.+.+.|+.+.+|. +.|++|.+.||+++.+|++|||.|.++.+++.++|++++.|++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~~~--~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~ 79 (373)
T cd01158 2 EHQMIRKTVRDFAEKEIAPLAAEMDEKGEFPR--EVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAV 79 (373)
T ss_pred hHHHHHHHHHHHHHHhcccchHHHhhcCCCCH--HHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHH
Confidence 45699999999999889988888998888999 9999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCCCcCCE
Q 015286 115 SYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQT 194 (410)
Q Consensus 115 ~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~~~ad~ 194 (410)
++.+|...+...+..+++++|+++|++++.+|+.++++++|||.+|++...+.+++++++|||+|||+|.|+||+.+||+
T Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~ 159 (373)
T cd01158 80 IVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADF 159 (373)
T ss_pred HHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCE
Confidence 98888756667888999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhhcHHHHH
Q 015286 195 LVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLV 274 (410)
Q Consensus 195 ~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~~~rl~ 274 (410)
++|.++++.+++..++.+|+||++.|||++.++|+++|++++++++|.|+||+||++++++..+.|+......+...|+.
T Consensus 160 ~lv~a~~~~~~~~~~~~~~lvp~~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~ 239 (373)
T cd01158 160 YIVFAVTDPSKGYRGITAFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRIG 239 (373)
T ss_pred EEEEEEcCCCCCCCceEEEEEcCCCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHHHHH
Confidence 99999976554456788999999999999999999999999999999999999999999999988988888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhHHHHHHHH
Q 015286 275 LAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAE 354 (410)
Q Consensus 275 ~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~~ak~~~~~ 354 (410)
+++.++|+++++++.+++|+++|.+||.++.++|.+|++++++.+.+++++++++.++..++.+.+...+..++|+++++
T Consensus 240 ~~a~~lG~a~~~l~~~~~~~~~R~~~g~~~~~~~~v~~~la~~~~~l~aa~~~~~~aa~~~~~~~~~~~~~~~~k~~~~~ 319 (373)
T cd01158 240 IAAQALGIAQAALDAAVDYAKERKQFGKPIADFQGIQFKLADMATEIEAARLLTYKAARLKDNGEPFIKEAAMAKLFASE 319 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998776556778899999999
Q ss_pred HHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhc
Q 015286 355 RATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 355 ~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
.+.++++.+++++||.||.++++++|+|||++...+++|++++++..|++.++|
T Consensus 320 ~a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 373 (373)
T cd01158 320 VAMRVTTDAVQIFGGYGYTKDYPVERYYRDAKITEIYEGTSEIQRLVIAKHLLK 373 (373)
T ss_pred HHHHHHHHHHHhhcCccCCCCChHHHHHHHhhhccccCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999986
No 18
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=7.2e-64 Score=488.78 Aligned_cols=371 Identities=24% Similarity=0.329 Sum_probs=330.4
Q ss_pred HHHHHHHHHHHhccCcchhhhhhcC-------CCCC--cHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhc
Q 015286 38 QFKESVGQFARENIAPRAANIDQSN-------SFPQ--DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (410)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~d~~~-------~~p~--~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~ 108 (410)
+|++.+|+|+++++.|...++|+.+ .+|+ ..++|+++.+.||+++.+|++|||.|+++.+.+.++|+++++
T Consensus 5 ~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~~~ 84 (394)
T cd01155 5 ELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEETGRS 84 (394)
T ss_pred HHHHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHHhhh
Confidence 8999999999999999877777431 1343 138888999999999999999999999999999999999998
Q ss_pred ccc-hhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCC-CCCCCCCceeEEEEeCCeEEEeeeeeee
Q 015286 109 SGS-VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMWC 186 (410)
Q Consensus 109 ~~s-~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~-~Gs~~~~~~t~a~~~~~g~~lnG~k~~~ 186 (410)
|.. ..+....+...+...+..+|+++|+++|++++++|+.++++++|||+ .|+|...+.+++++++|||+|||+|.|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~~v 164 (394)
T cd01155 85 FFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKWWS 164 (394)
T ss_pred cccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEEEE
Confidence 633 23222222213345788999999999999999999999999999997 6799888999999999999999999999
Q ss_pred cCCCc--CCEEEEEEEeCCCC--CCCCeEEEEEeCCCCCeeeccccccccCCC--CCceeEEeceeeeCCCCcccCCCch
Q 015286 187 TNGPV--AQTLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKLGMRG--SDTCELVFENCFVPNENVLGQEGKG 260 (410)
Q Consensus 187 s~~~~--ad~~~v~a~~~~~~--~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~--~~s~~v~f~~v~VP~~~~lg~~~~g 260 (410)
||+.+ +|+++|.+++++++ +..++.+|+||++.|||++.++|+++|+++ +++++|.|+||+||++++++..+.|
T Consensus 165 s~~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~~~g 244 (394)
T cd01155 165 SGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILGEGRG 244 (394)
T ss_pred cCCCCCCCCEEEEEEEeCCCcCCCCCceEEEEEeCCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCCCChH
Confidence 99954 88999999986432 235789999999999999998999999997 6789999999999999999998889
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-
Q 015286 261 VYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK- 339 (410)
Q Consensus 261 ~~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~- 339 (410)
+......+...|+..++.++|+++++++.+++|+++|.+||+|+.++|.+|++|++|.+.++++|++++.+++.++.+.
T Consensus 245 ~~~~~~~~~~~r~~~~a~~lG~a~~al~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~~ 324 (394)
T cd01155 245 FEIAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAFGKKLAQHGVVAHWIAKSRIEIEQARLLVLKAAHMIDTVGN 324 (394)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 8888888889999999999999999999999999999999999999999999999999999999999999999988743
Q ss_pred -CChhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhc
Q 015286 340 -VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 340 -~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
.....++++|+++++.+.++++.+++++||.||+++++++|+|||++.+.+++|++++++..|++.++|
T Consensus 325 ~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~~~~~~ia~~~~~ 394 (394)
T cd01155 325 KAARKEIAMIKVAAPRMALKIIDRAIQVHGAAGVSQDTPLANMYAWARTLRIADGPDEVHLRSIARMELK 394 (394)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCHHHHHHHHHhhceeecCHHHHHHHHHHHHHhC
Confidence 245778999999999999999999999999999999999999999999999999999999999998864
No 19
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=8.9e-63 Score=502.65 Aligned_cols=366 Identities=23% Similarity=0.350 Sum_probs=325.4
Q ss_pred CCcHHHHHHHHH-HHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 015286 31 LFDDTQLQFKES-VGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (410)
Q Consensus 31 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~ 109 (410)
+++|++ .+++. +++|+. .+ ....+.++.+.+|+ ++|+.+++.||+++.+|++|||.|++..+.+.++|++++.|
T Consensus 79 Ls~ee~-~~~d~~v~~l~~-~~-~~~~~~~~~~~~P~--e~w~~L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~ 153 (777)
T PRK09463 79 LTAEEQ-AFLDGPVEELCR-MV-NDWQITHELADLPP--EVWQFIKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRS 153 (777)
T ss_pred CCHHHH-HHHHHHHHHHHH-HH-HHHHHhccccCCCH--HHHHHHHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhC
Confidence 455555 88886 888864 22 12222233478999 99999999999999999999999999999999999999999
Q ss_pred cchhHHHHhhhhHH-HHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeE-----EEEeCC---eEEEe
Q 015286 110 GSVGLSYGAHSNLC-INQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCK-----ADRVDG---GYIIN 180 (410)
Q Consensus 110 ~s~~~~~~~~~~~~-~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~-----a~~~~~---g~~ln 180 (410)
++++..+..|++++ ..+|..+|+++||++|||++++|+.+.|+++|||++|||...++|+ ++++++ ||+||
T Consensus 154 ~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLN 233 (777)
T PRK09463 154 GTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLT 233 (777)
T ss_pred cchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCCcccccccceeeeeeecCCcccceEEE
Confidence 98877666665455 3578899999999999999999999999999999999999888754 445666 69999
Q ss_pred eeeeeecCCCcCCEEEEEEEe-CCC-----CCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcc
Q 015286 181 GNKMWCTNGPVAQTLVVYAKT-DIK-----AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL 254 (410)
Q Consensus 181 G~k~~~s~~~~ad~~~v~a~~-~~~-----~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~l 254 (410)
|+|.|||+++.||+++|.+++ +++ ++..++++|+||++.|||++.+.++++|++ ..++++.|+||+||.+++|
T Consensus 234 G~K~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp~d~pGV~ig~~~~~lG~r-~~~g~v~fddV~VP~d~lL 312 (777)
T PRK09463 234 WNKRYITLAPIATVLGLAFKLYDPDGLLGDKEDLGITCALIPTDTPGVEIGRRHFPLNVP-FQNGPTRGKDVFIPLDYII 312 (777)
T ss_pred EEEEeeCCCCccCEEEEEEEecCcccccCCCCCCceEEEEEECCCCCeEecccccccCcc-cccceEEeeeeecCHHHhc
Confidence 999999999999999999986 332 235679999999999999999999999998 5689999999999999999
Q ss_pred cCC---CchHHHHHhhhcHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHH
Q 015286 255 GQE---GKGVYVMMSGLDLER-LVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYS 330 (410)
Q Consensus 255 g~~---~~g~~~~~~~~~~~r-l~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~ 330 (410)
|.. +.|+..++..++.+| +.+++.++|+++++++.+++|+++|+|||+||+++|.||++|++|.+++++++++.+.
T Consensus 313 G~~~~~G~G~~~l~~~L~~gR~i~laA~avG~ar~al~~Av~YA~~R~QFG~pIg~fQaVQ~~LAdma~~~~a~eaar~~ 392 (777)
T PRK09463 313 GGPKMAGQGWRMLMECLSVGRGISLPSNSTGGAKLAALATGAYARIRRQFKLPIGKFEGIEEPLARIAGNAYLMDAARTL 392 (777)
T ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 874 889999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhccccccCc--chHHHHHhhhccCcccCChHHHHHHHH
Q 015286 331 VARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNE--YATGRLLRDAKLYEIGAGTSEIRRMII 402 (410)
Q Consensus 331 a~~~~d~~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~--~~l~r~~Rd~~~~~~~~G~~~~~~~~i 402 (410)
+++.+|.+.....+++++|+++++.+.++++.++|+|||.||+++ ++++|+|||++...+.+|+|++++..|
T Consensus 393 ~a~~~D~G~~~~~~aA~AK~~atE~a~~va~~AmQIhGG~G~~~~~~~~leR~yRdari~~i~eGtn~i~r~~i 466 (777)
T PRK09463 393 TTAAVDLGEKPSVLSAIAKYHLTERGRQVINDAMDIHGGKGICLGPNNFLARAYQAAPIAITVEGANILTRSLM 466 (777)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhchhheeCCCCChHHHHHHhCcchheeCcHHHHHHHHH
Confidence 888888876567788999999999999999999999999999997 899999999999999999999999876
No 20
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=4.3e-62 Score=495.69 Aligned_cols=366 Identities=22% Similarity=0.295 Sum_probs=320.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhc
Q 015286 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (410)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~ 108 (410)
+.+++||+.-+.+.++.++. .+. .....++.+.+|+ ++|+.|++.||+++.+|++|||.|++..+.+.++|++++.
T Consensus 76 ~~l~~eeq~fl~~~v~~l~~-~~~-e~~~~~~~~~~P~--evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~ 151 (774)
T PRK13026 76 PTLTAEEQAFIDNEVETLLT-MLD-DWDIVQNRKDLPP--EVWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATR 151 (774)
T ss_pred cccCHHHHHHHHHHHHHHHh-hhh-hhhhhhhhcCCCH--HHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHh
Confidence 34677777444447888854 222 2333456788999 9999999999999999999999999999999999999999
Q ss_pred ccchhHHHHhhhhHH-HHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEE-----EeCC---eEEE
Q 015286 109 SGSVGLSYGAHSNLC-INQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKAD-----RVDG---GYII 179 (410)
Q Consensus 109 ~~s~~~~~~~~~~~~-~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~-----~~~~---g~~l 179 (410)
+.+++..+.+|++++ ..+|..+|+++||++|||++++|+.++|+++|||++|||..+++|+++ ++++ ||+|
T Consensus 152 ~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvL 231 (774)
T PRK13026 152 SVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRL 231 (774)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEE
Confidence 988877666665444 457889999999999999999999999999999999999998886554 5666 6999
Q ss_pred eeeeeeecCCCcCCEEEEEEEe-CCC-----CCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCc
Q 015286 180 NGNKMWCTNGPVAQTLVVYAKT-DIK-----AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENV 253 (410)
Q Consensus 180 nG~k~~~s~~~~ad~~~v~a~~-~~~-----~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~ 253 (410)
||+|.|||+++.||++++.+++ +++ ++..++++|+||++.|||++.+.++++|+++. ++++.||||+||.+++
T Consensus 232 NG~K~~IT~A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fLVp~d~pGV~ig~~~~~lG~~~~-~g~v~fdDV~VP~d~l 310 (774)
T PRK13026 232 TWDKRYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPTDHPGVEIGRRHNPLGMAFM-NGTTRGKDVFIPLDWI 310 (774)
T ss_pred EEEEEeecCccccCEEEEEEEeeCccccccCCCCCceEEEEEECCCCCeEeeccccccccCcc-cceEEEeeeEccHHHh
Confidence 9999999999999999887764 332 23468999999999999999989999999874 5899999999999999
Q ss_pred ccCC---CchHHHHHhhhcHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHH---HHHHHHH
Q 015286 254 LGQE---GKGVYVMMSGLDLER-LVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYT---ALQSSRS 326 (410)
Q Consensus 254 lg~~---~~g~~~~~~~~~~~r-l~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~---~l~a~~~ 326 (410)
||.+ ++|+..++..++.+| +.+++.++|+++.+++.+++|+++|+|||+||+++|.||++||+|.+ .++++|.
T Consensus 311 LG~~~~~G~G~~~l~~~L~~gR~i~laA~a~G~A~~al~~Av~YA~~R~QFG~pIg~fQ~Vq~~LAdma~~~y~lEaaR~ 390 (774)
T PRK13026 311 IGGPDYAGRGWRMLVECLSAGRGISLPALGTASGHMATRTTGAYAYVRRQFGMPIGQFEGVQEALARIAGNTYLLEAARR 390 (774)
T ss_pred cCCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9975 889999999999999 89999999999999999999999999999999999999999999999 7899999
Q ss_pred HHHHHHHHhhCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhccccccCc--chHHHHHhhhccCcccCChHHHHHHHH
Q 015286 327 YVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNE--YATGRLLRDAKLYEIGAGTSEIRRMII 402 (410)
Q Consensus 327 ~~~~a~~~~d~~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~--~~l~r~~Rd~~~~~~~~G~~~~~~~~i 402 (410)
+++.++ |.+.....+++++|+++++.+.++++.++|+|||.||+++ ++++|+|||++...+.+|+|++++..|
T Consensus 391 l~~~a~---D~G~~~~~~aA~AK~~atE~a~~va~~AmQIhGG~Gy~~e~~~~ler~yRdari~~i~eGtnei~R~l~ 465 (774)
T PRK13026 391 LTTTGL---DLGVKPSVVTAIAKYHMTELARDVVNDAMDIHAGKGIQLGPKNYLGHAYMAVPIAITVEGANILTRNLM 465 (774)
T ss_pred HHHHHH---HCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhchheeeCCCCChHHHHHHHhhhhheeCcHHHHHHHHH
Confidence 988764 5554456788999999999999999999999999999998 899999999999999999999999743
No 21
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=5.4e-61 Score=467.65 Aligned_cols=371 Identities=24% Similarity=0.354 Sum_probs=323.5
Q ss_pred CcHHHHHHHHHHHHHHHhccCcchhhh-hhcCCCCC--cHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhc
Q 015286 32 FDDTQLQFKESVGQFARENIAPRAANI-DQSNSFPQ--DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (410)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~p~--~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~ 108 (410)
+++|+.++++.+++|+++++.|...+. ++...+|. ..++|+++.+.||+++.+|++|||.|+++.+.+.++|+++++
T Consensus 4 lteeq~~l~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eelg~~ 83 (395)
T TIGR03204 4 FSKEEQAFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEELQSA 83 (395)
T ss_pred CCHHHHHHHHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhc
Confidence 466777999999999999998765442 23334552 127999999999999999999999999999999999999999
Q ss_pred ccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecC
Q 015286 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN 188 (410)
Q Consensus 109 ~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~ 188 (410)
+.+.++.+.++ ++...+..+|+++|+++|+|++.+|+.++++++|||++|||...+.|+++++++||+|||+|.|+|+
T Consensus 84 ~~~~~~~~~~~--~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~vt~ 161 (395)
T TIGR03204 84 PAPQPLAFGVS--MVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTL 161 (395)
T ss_pred CCCccchhHhH--hhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEeecC
Confidence 98877644332 3344678889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCEEEEEEEeCCCC-CCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhh
Q 015286 189 GPVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG 267 (410)
Q Consensus 189 ~~~ad~~~v~a~~~~~~-~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~ 267 (410)
+..||+++|.++++++. +..++.+|+||.+.|||++.+.....| ++++++|.|+||+||+++++|..+.|+......
T Consensus 162 a~~Ad~~lv~a~~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~ 239 (395)
T TIGR03204 162 AQHADWIFCLCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENKGWDYAKFL 239 (395)
T ss_pred CccCCeEEEEEEeCCCCCCCCCeEEEEEeCCCCCeEecChhhccC--CCceeEEEEcceEEcHHHcCCCCCchHHHHHHH
Confidence 99999999999976432 346789999999999999965444443 678899999999999999999988999988888
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCC-CChhhh
Q 015286 268 LDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCD-NGK-VDPKDC 345 (410)
Q Consensus 268 ~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d-~~~-~~~~~~ 345 (410)
+...|++.++ +|+++++++.+++|+++|++||+||+++|.||++|++|.++++++|+++|+++.... .+. .....+
T Consensus 240 l~~~r~g~aa--~g~a~~~l~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~~a 317 (395)
T TIGR03204 240 LGNERTGIAR--VGVSKERIRRIKDLAAKVESGGKPVIEDAKFREKLAAVEIELKALELTQLRVVADEGKHGKGKPNPAS 317 (395)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 8899988876 899999999999999999999999999999999999999999999999999975432 221 234579
Q ss_pred hHHHHHHHHHHHHHHHHHHHh----------hccccccCc----chHHHHHhhhccCcccCChHHHHHHHHHHHhhc
Q 015286 346 AGVILCAAERATQVTLQAIQC----------LGGNGYVNE----YATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 346 ~~ak~~~~~~a~~~~~~~~~~----------~Gg~g~~~~----~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
+++|+++++.+.++++.++|+ |||.||+++ ++++++|||++.+.+++|++++++.+|+|.+++
T Consensus 318 a~aK~~~~~~~~~~~~~a~q~~g~~~~~~~~~Gg~G~~~~~~~~~~~~~~~r~~~~~~i~~Gt~ei~~~~ia~~~l~ 394 (395)
T TIGR03204 318 SVLKIKGSEIQQATTELLMEVIGPFAAPYDVHGDDGSNEAMDWTAQIAPSYFNNRKVSIYGGSNEIQRNIIAKAVLG 394 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhhhHHHHHHHhccccceeccHHHHHHHHHHHHHcC
Confidence 999999999999999999985 888999865 479999999999999999999999999998864
No 22
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=8.1e-61 Score=468.73 Aligned_cols=362 Identities=29% Similarity=0.446 Sum_probs=326.2
Q ss_pred HHHHHHHHHhccCcchhhhhhcCC--------CCCc-HHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccc
Q 015286 40 KESVGQFARENIAPRAANIDQSNS--------FPQD-VNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG 110 (410)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~d~~~~--------~p~~-~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~~ 110 (410)
++.+++|+.+.+.|.+.++|+... ||+. .++|++|.+.||+++.+|++|||.|.++.+...+.|+++++|+
T Consensus 2 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~ 81 (407)
T cd01153 2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDA 81 (407)
T ss_pred hHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhH
Confidence 678999999999998888887654 8842 3789999999999999999999999999999999999999999
Q ss_pred chhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEe-CCeEEEeeeeeeecCC
Q 015286 111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNG 189 (410)
Q Consensus 111 s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~-~~g~~lnG~k~~~s~~ 189 (410)
+++|.+..|. +...+..+++++|+++|++++.+|+.+.++++|||++|||...++|+++++ +|||+|||+|.|+||+
T Consensus 82 s~~~~~~~~~--~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~ 159 (407)
T cd01153 82 PLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAG 159 (407)
T ss_pred HHHHHHHHhH--HHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCC
Confidence 9988776553 345677889999999999999999999999999999999999999999998 5689999999999999
Q ss_pred CcC----CEEEEEEEeCCC-CCCCCeEEEEEeCCC-----CCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCc
Q 015286 190 PVA----QTLVVYAKTDIK-AGSKGITAFIIEKGM-----PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGK 259 (410)
Q Consensus 190 ~~a----d~~~v~a~~~~~-~~~~~~~~flV~~~~-----~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~ 259 (410)
.+| ++++|+++++++ ++..++.+|+||++. |||++.+.|+++|++++++++|.|+||+|| +++.++.
T Consensus 160 ~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp~~~~~~~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~~~~ 236 (407)
T cd01153 160 EHDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEGM 236 (407)
T ss_pred CcccccccEEEEEEeCCCCCCCCCceEEEEEeccCcCCCCCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCCCCc
Confidence 886 578888987542 234578899999987 899999999999999999999999999999 7898888
Q ss_pred hHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc--------cccchhHHHHHHHHHHHHHHHHHHHHHH
Q 015286 260 GVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRP--------LGEFQFIQGKTADMYTALQSSRSYVYSV 331 (410)
Q Consensus 260 g~~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~--------l~~~~~v~~~la~~~~~l~a~~~~~~~a 331 (410)
|+......+...|+.++++++|+++++++.+++|+++|++||+| +.++|.+|++|+++.+++++++++++.+
T Consensus 237 g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~~~~~a 316 (407)
T cd01153 237 GLAQMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLYT 316 (407)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888999999999999999999999999999999999999 8889999999999999999999999999
Q ss_pred HHHhhCCCCC--------------hhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHH
Q 015286 332 ARDCDNGKVD--------------PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEI 397 (410)
Q Consensus 332 ~~~~d~~~~~--------------~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~ 397 (410)
++.+|..... ....+++|+++++.+.++++.++++|||.||.++++++|+|||+++..+++|++++
T Consensus 317 a~~~d~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~Gt~~~ 396 (407)
T cd01153 317 ATVQDLAERKATEGEDRKALSALADLLTPVVKGFGSEAALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGI 396 (407)
T ss_pred HHhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCcHHHHHHhhhhheeecChHHH
Confidence 9988765311 23356899999999999999999999999999999999999999999999999998
Q ss_pred HHH-HHHHHh
Q 015286 398 RRM-IIGRAL 406 (410)
Q Consensus 398 ~~~-~i~~~~ 406 (410)
++. .+++++
T Consensus 397 ~~~~~~~~~~ 406 (407)
T cd01153 397 QALDLIGRKI 406 (407)
T ss_pred HHHHHhhccc
Confidence 876 777765
No 23
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=1.4e-60 Score=466.29 Aligned_cols=374 Identities=43% Similarity=0.704 Sum_probs=343.5
Q ss_pred HHHHHHHHHHHHHHHhccCcchhhhhh---cCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccc
Q 015286 34 DTQLQFKESVGQFARENIAPRAANIDQ---SNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG 110 (410)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~~ 110 (410)
+++..+++.+++|+.+.+.+...+.++ ...+|. ++++++.+.|++++.+|++|||.+.+..+...+.|++++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~~~~ 84 (393)
T COG1960 7 EEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPR--ELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARADA 84 (393)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhhhhcccccCHH--HHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHHhhCc
Confidence 555699999999999999887777775 678887 999999999999999999999999999999999999999999
Q ss_pred chhHHHHhhhhH---HHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCce-eEEEEeCCeEEEeeeeeee
Q 015286 111 SVGLSYGAHSNL---CINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMK-CKADRVDGGYIINGNKMWC 186 (410)
Q Consensus 111 s~~~~~~~~~~~---~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~-t~a~~~~~g~~lnG~k~~~ 186 (410)
+.++.+..+... ....+..+|+++|+++|+|++.+|+.++|+++|||.+|||+..++ |++++++|+|+|||+|+|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~~i 164 (393)
T COG1960 85 GGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWI 164 (393)
T ss_pred chhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeEEEEE
Confidence 887666654322 223566799999999999999999999999999999999999987 7777767779999999999
Q ss_pred cCCCcCCEEEEEEEeCCC-CCCCCeEEEEEeCC-CCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHH
Q 015286 187 TNGPVAQTLVVYAKTDIK-AGSKGITAFIIEKG-MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVM 264 (410)
Q Consensus 187 s~~~~ad~~~v~a~~~~~-~~~~~~~~flV~~~-~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~ 264 (410)
||+.+||+++|+++++++ ++.+++++|+||++ .|||++.+.|++.|+++++++++.|+||+||.+++||..+.|+...
T Consensus 165 s~~~~ad~~~v~Ar~~~~~~~~~gis~flV~~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~~~ 244 (393)
T COG1960 165 SNAPVADWLLVLARTDPAPGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKIA 244 (393)
T ss_pred cCCCCCCEEEEEEEcCCcccccCceEEEEEeCCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcCCchHHHH
Confidence 999999999999999865 45678999999999 5999998877644999999999999999999999999999999999
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhh
Q 015286 265 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKD 344 (410)
Q Consensus 265 ~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~ 344 (410)
...+...|+.+++.++|+++++++.+++|+++|++||++++++|.+|++|+++.+++++++++++++++..+.+......
T Consensus 245 ~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~~i~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~~~~~~~~~~ 324 (393)
T COG1960 245 METLNVERLGIAAQALGIAEAALEEAVAYARERKQFGRPIADFQLVQFKLADMAAELEAARLLVLRAAELADAGDDAGAE 324 (393)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887544478
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhcc
Q 015286 345 CAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 409 (410)
Q Consensus 345 ~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 409 (410)
++++|+++++.+.++++.++|++||.||+.+++++|+|||++...+++|++++++..+++.+++.
T Consensus 325 ~~~aK~~a~~~~~~~~~~a~q~~Gg~g~~~e~~i~r~~rda~~~~i~~Gt~~i~~~~i~~~~~~~ 389 (393)
T COG1960 325 AAMAKLFATEAALEVADEAVQVHGGYGYTEEYPVERYYRDARILRIYEGTSEIQRLIIARRLLGL 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccCchHHHHHHHhHhheeccCHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999998764
No 24
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1.9e-60 Score=462.68 Aligned_cols=365 Identities=24% Similarity=0.367 Sum_probs=324.2
Q ss_pred HHHHHHHHHHHHHHhccCcchhh-----hhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 015286 35 TQLQFKESVGQFARENIAPRAAN-----IDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (410)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~ 109 (410)
|+.++++.+++|+++++.|.... .|+.+.+|. +++++|++.||+++.+|++|||.|.++.+.+.++|++++.|
T Consensus 2 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~ 79 (380)
T cd01152 2 SEEAFRAEVRAWLAAHLPPELREESALGYREGREDRR--RWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAG 79 (380)
T ss_pred cHHHHHHHHHHHHHhcCCccccccccccccccchHHH--HHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcC
Confidence 34499999999999999886532 244566888 89999999999999999999999999999999999999999
Q ss_pred cchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCC
Q 015286 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 189 (410)
Q Consensus 110 ~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~ 189 (410)
.++++.+..+. .+...+..+|+++|+++|++++.+|+.+.++++|||+.|||...+.++++++++||+|||+|.|+|++
T Consensus 80 ~~~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~ 158 (380)
T cd01152 80 APVPFNQIGID-LAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGA 158 (380)
T ss_pred CCcccchhhHH-HHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCc
Confidence 99887522333 44567888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCEEEEEEEeCCCC-CCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhh
Q 015286 190 PVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGL 268 (410)
Q Consensus 190 ~~ad~~~v~a~~~~~~-~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~ 268 (410)
.+||+++|.++++++. +..++.+|+||++.|||++.+.|+++| +++++++.|+||+||.+++|+.++.|+......+
T Consensus 159 ~~ad~~lv~a~~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l 236 (380)
T cd01152 159 HYADWAWLLVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTL 236 (380)
T ss_pred cccCEEEEEEEeCCCccCcCCeEEEEEeCCCCceEeeehhhccC--CCCcceEEecCcCcchhcccCCCCchHHHHHHHH
Confidence 9999999999976432 234688999999999999999998887 5788999999999999999999988988877777
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhHH
Q 015286 269 DLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGV 348 (410)
Q Consensus 269 ~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~~a 348 (410)
...|+..++.+.| +++.+++|+++|.+||+||.++|.+|++|++|.+++++++++++.+++.++.+......++++
T Consensus 237 ~~~r~~~~~~~~~----~~~~a~~~a~~r~~~g~~l~~~~~vq~~la~~~~~l~~a~~l~~~aa~~~~~~~~~~~~~a~a 312 (380)
T cd01152 237 NFERVSIGGSAAT----FFELLLARLLLLTRDGRPLIDDPLVRQRLARLEAEAEALRLLVFRLASALAAGKPPGAEASIA 312 (380)
T ss_pred HhcccccchhhhH----HHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHH
Confidence 7777776655444 455667788889999999999999999999999999999999999999998876555678999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccCc--------chHHHHHhhhccCcccCChHHHHHHHHHHHhhc
Q 015286 349 ILCAAERATQVTLQAIQCLGGNGYVNE--------YATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 349 k~~~~~~a~~~~~~~~~~~Gg~g~~~~--------~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
|+++++.+.++++.+++++||.||.++ ++++|+|||++.+.+++|++++++.+|++.+++
T Consensus 313 K~~~~~~a~~v~~~a~~i~Gg~g~~~~~~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 380 (380)
T cd01152 313 KLFGSELAQELAELALELLGTAALLRDPAPGAELAGRWEADYLRSRATTIYGGTSEIQRNIIAERLLG 380 (380)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccccccccccccccHHHHHHHhCccceeeccHHHHHHHHHHHHhcC
Confidence 999999999999999999999999988 799999999999999999999999999998874
No 25
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1e-59 Score=475.43 Aligned_cols=374 Identities=24% Similarity=0.370 Sum_probs=331.8
Q ss_pred CCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCC---------CC-cHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHH
Q 015286 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSF---------PQ-DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHC 99 (410)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------p~-~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~ 99 (410)
.++.|..+.+++.+++|+++++.|...+.|+.+.+ |+ ..+.|+++.+.||+++.+|++|||.|++.....
T Consensus 54 ~~~~~~~~~il~~a~~fa~~~~~p~~~~~D~~~~~~~~~g~v~~p~g~~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~ 133 (622)
T PTZ00456 54 DVTKELMDSLLEEASKLATQTLLPLYESSDSEGCVLLKDGNVTTPKGFKEAYQALKAGGWTGISEPEEYGGQALPLSVGF 133 (622)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcccchhhHhhccCccccCCcccCChhHHHHHHHHHHcCCCCCCCCcccCCCCcCHHHHH
Confidence 67789999999999999999999998888876543 53 248999999999999999999999999988666
Q ss_pred HHHHHHHhcccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCe-EE
Q 015286 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG-YI 178 (410)
Q Consensus 100 ~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g-~~ 178 (410)
.+.|.++..+++++.....+. .+...|..+|+++||++|||++++|++++++++|||++|||+..++|+|++++|| |+
T Consensus 134 ~~~E~~~~a~~~~~~~~~l~~-ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~ 212 (622)
T PTZ00456 134 ITRELMATANWGFSMYPGLSI-GAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYK 212 (622)
T ss_pred HHHHHHHHhchHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEE
Confidence 666667777777654434333 4556889999999999999999999999999999999999999999999999875 99
Q ss_pred EeeeeeeecCCCcC----CEEEEEEEeCCC-CCCCCeEEEEEeCCC----------CCeeeccccccccCCCCCceeEEe
Q 015286 179 INGNKMWCTNGPVA----QTLVVYAKTDIK-AGSKGITAFIIEKGM----------PGFSTAQKLDKLGMRGSDTCELVF 243 (410)
Q Consensus 179 lnG~k~~~s~~~~a----d~~~v~a~~~~~-~~~~~~~~flV~~~~----------~gv~~~~~~~~~Gl~~~~s~~v~f 243 (410)
|||+|.|||++.++ ++++|+||++++ ++.+++++|+||++. +||++...++++|+++++++.|.|
T Consensus 213 L~G~K~fIt~g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~f 292 (622)
T PTZ00456 213 ITGTKIFISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQLSF 292 (622)
T ss_pred EeeEEEEecCCchhhccCcEEEEEEEecCCCCCCCceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEEEe
Confidence 99999999999863 688999998753 456789999999865 478887888999999999999999
Q ss_pred ceeeeCCCCcccCCCchHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc------------CCccccchhHH
Q 015286 244 ENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQF------------GRPLGEFQFIQ 311 (410)
Q Consensus 244 ~~v~VP~~~~lg~~~~g~~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~------------g~~l~~~~~v~ 311 (410)
+|+ .+++||.+++|+..+...++..|+.+++.++|+++++++.+++|+++|+|| +.||+++|.||
T Consensus 293 d~~---~~~llG~~~~Gl~~~~~~mn~aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr 369 (622)
T PTZ00456 293 ENS---VGYLIGEPNAGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEKPADRIICHANVR 369 (622)
T ss_pred eCh---hHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccCCCCccccCHHHH
Confidence 994 578999999999999999999999999999999999999999999999984 67899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCC--C-----------ChhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchH
Q 015286 312 GKTADMYTALQSSRSYVYSVARDCDNGK--V-----------DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYAT 378 (410)
Q Consensus 312 ~~la~~~~~l~a~~~~~~~a~~~~d~~~--~-----------~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l 378 (410)
++|++|.+.++++|++++.++..+|... + .....+++|+++++.+.++++.++|+|||.||++++++
T Consensus 370 ~~L~~~~a~~eaaral~~~aA~~~D~~~~~~~~~~~~~~~~~~~~~t~iaK~~~te~a~~va~~aiQv~GG~Gy~~e~~l 449 (622)
T PTZ00456 370 QNILFAKAVAEGGRALLLDVGRLLDIHAAAKDAATREALDHEIGFYTPIAKGCLTEWGVEAASRCLQVWGGHGYIKGNGM 449 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCccCCchH
Confidence 9999999999999999999999888642 1 12346799999999999999999999999999999999
Q ss_pred HHHHhhhccCcccCChHHHHH-HHHHHHhh
Q 015286 379 GRLLRDAKLYEIGAGTSEIRR-MIIGRALL 407 (410)
Q Consensus 379 ~r~~Rd~~~~~~~~G~~~~~~-~~i~~~~~ 407 (410)
+|+|||++...|++|+++|++ ..|+|+++
T Consensus 450 er~~RDari~~i~eGt~~iq~~dli~rkll 479 (622)
T PTZ00456 450 EQILRDARIGTLYEGTTGIQALDFIGRKVL 479 (622)
T ss_pred HHHHHHhhcccccCChHHHHHHHHHHHHhh
Confidence 999999999999999999997 59999997
No 26
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=2.8e-61 Score=455.71 Aligned_cols=397 Identities=31% Similarity=0.498 Sum_probs=359.0
Q ss_pred cchhhhh-ccccccccCCCcCCCCCCCcHHHHHHHHHHHHHHHhccCc--chhhhhhcCCCCCcHHHHHHHHHcCCCCCC
Q 015286 7 ARSLCAS-FFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAP--RAANIDQSNSFPQDVNLWKLMGNFNLHGIT 83 (410)
Q Consensus 7 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~ 83 (410)
.|++.+. |.. ..+.+.+-+.+...++|+.++.+..-.-+.+.+.+ ..+..|+....++ ..++.|++.|+|++.
T Consensus 52 ~rs~~~~lF~~--~~v~k~v~~yPev~~~e~~~~~~~~~~pl~r~f~e~~d~~k~d~~~~~~~--~t~e~l~elG~fgl~ 127 (634)
T KOG0137|consen 52 SRSFARGLFRG--KLVTKDVFPYPEVITSEQKELLEQFVLPLERFFEEVNDSKKNDKLGKIEE--TTLEALRELGLFGLQ 127 (634)
T ss_pred chhHHHHhhhh--hhhhhhhcCCcccCcHHHHHHHHhhhhhHHHhhhccchhhhhhhhcccch--hHHHHHHHhCceeec
Confidence 4455555 222 24444555666777777777776655555555543 3567788889999 999999999999999
Q ss_pred CCcCCCCCCCCHHHHHHHHHHHHhcccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCC
Q 015286 84 APQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDV 163 (410)
Q Consensus 84 ~p~~~GG~g~~~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~ 163 (410)
+|.+|+|.|++..+++.++|.++.+|.++...+..|...+...|..+|+++||++|||++++|+.++++++|||.+|||.
T Consensus 128 v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~~~~A~altE~s~Gsda 207 (634)
T KOG0137|consen 128 VPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGKLIAAFALTEPSSGSDA 207 (634)
T ss_pred cCcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCCccceEEEecCCCCccc
Confidence 99999999999999999999999999999988888887888899999999999999999999999999999999999999
Q ss_pred CCceeEEEEeCCe--EEEeeeeeeecCCCcCCEEEEEEEeCCCC----CCCCeEEEEEeCCCCCeeeccccccccCCCCC
Q 015286 164 VGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKA----GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSD 237 (410)
Q Consensus 164 ~~~~t~a~~~~~g--~~lnG~k~~~s~~~~ad~~~v~a~~~~~~----~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~ 237 (410)
....|+++...|| |+|||.|.|+||+..||+++|+|++..++ ...++++|+|+++.-||+-.++..++|.+++.
T Consensus 208 as~~~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~VfAqt~~~~~~g~~k~k~T~Flver~~~Gvt~G~~e~k~GiKgsn 287 (634)
T KOG0137|consen 208 ASGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTVFAQTEVDPADGEVKRKITAFLVERDFGGVTNGPPEKKMGIKGSN 287 (634)
T ss_pred ccceeeeeecCCCCeEEEcCeeEEEecCccceeeeeeeccccCCCCccccCceEEEEEeccccCccCCCchhhhcccccc
Confidence 9999999886644 99999999999999999999999997432 34679999999999999999999999999999
Q ss_pred ceeEEeceeeeCCCCcccCCCchHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHH
Q 015286 238 TCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADM 317 (410)
Q Consensus 238 s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~ 317 (410)
+++|+|++|.||.+++||.+++|+.+.+..++-+|+..++..+|+++++++++.+|+..|.|||++|.++..+|.++++|
T Consensus 288 t~~v~f~~~ki~~envlG~~G~G~kva~nilnsgR~~~aaa~~G~mkr~I~~~~d~~~~rtQ~g~~L~~~~l~q~k~~~m 367 (634)
T KOG0137|consen 288 TAEVHFEGVKIPIENVLGKPGDGFKVAMNILNSGRFGMAAALLGLMKRIIEEAADYATNRTQFGKKLHDFGLIQEKVAEM 367 (634)
T ss_pred eeeeeeccccccHHHhcCCCCcchHHHHHHHccCCcchhHHHHHHHHHHHHHHHHHhhcceecCcchhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCC--CCChhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChH
Q 015286 318 YTALQSSRSYVYSVARDCDNG--KVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTS 395 (410)
Q Consensus 318 ~~~l~a~~~~~~~a~~~~d~~--~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~ 395 (410)
...+.+.++++|..+..+|+. .....+.++.|+++++.++.++++++|++||.||+++.+++|.+||++.+.|++|++
T Consensus 368 ~~~~Ya~ESm~yl~sg~~D~~~a~d~~lEaai~Ki~a~e~a~~v~se~iqi~Gg~g~m~d~g~Er~LRD~ri~~I~egtn 447 (634)
T KOG0137|consen 368 ASKVYATESMLYLLSGLMDEVGAKDVQLEAAILKIFASEQAWAVVSEAIQIVGGMGYMRDTGLERLLRDARILRIFEGTN 447 (634)
T ss_pred HHHHHHHHHHHHHHhcccccccceeeeehHHHHHHHhhhHHHHHHHhhhheeccccccccCchHHHhhhhheeeeecCch
Confidence 999999999999999999984 367889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 015286 396 EIRRMIIGRALL 407 (410)
Q Consensus 396 ~~~~~~i~~~~~ 407 (410)
||++..|+..-+
T Consensus 448 dvLrlfiAltg~ 459 (634)
T KOG0137|consen 448 DVLRLFIALTGL 459 (634)
T ss_pred hHHHHHHHHHHH
Confidence 999999986544
No 27
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=4.4e-59 Score=490.76 Aligned_cols=376 Identities=24% Similarity=0.346 Sum_probs=333.5
Q ss_pred CcHHHHHHHHHHHHHHHhccCcchhhhhhcC-------CCC-CcHHHHHHHH-HcCCCCCCCCcC---------------
Q 015286 32 FDDTQLQFKESVGQFARENIAPRAANIDQSN-------SFP-QDVNLWKLMG-NFNLHGITAPQE--------------- 87 (410)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-------~~p-~~~~~~~~l~-~~Gl~~~~~p~~--------------- 87 (410)
.++++.++++++++|+++++.|...++++.. .+| . +.|+++. +.||+++.+|++
T Consensus 402 ~s~~~~~l~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~~~~ 479 (822)
T PLN02876 402 PSEKVLELRKKLIKFMEDHIYPMENEFYKLAQSSSRWTVHPEE--ERLKELAKKEGLWNLWIPLDSAARARKLLFEDNKH 479 (822)
T ss_pred CCHHHHHHHHHHHHHHHHHccCccHHHHhhcccccccccCcch--HHHHHHHHHcCcccCCCCchhhhhhhhcccccccc
Confidence 4567779999999999999888765665322 366 5 7788875 999999999995
Q ss_pred ---------CCCCCCCHHHHHHHHHHHHhcccchh-HHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCC
Q 015286 88 ---------YGGLGLGYLYHCIAMEEISRASGSVG-LSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 157 (410)
Q Consensus 88 ---------~GG~g~~~~~~~~v~e~la~~~~s~~-~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep 157 (410)
|||.|+++.+...++|++++++.+.. +.+..+.......|..+|+++||++|++++++|+.++|+++|||
T Consensus 480 ~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp 559 (822)
T PLN02876 480 MVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEP 559 (822)
T ss_pred cccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCC
Confidence 99999999999999999999864422 21222222334568889999999999999999999999999999
Q ss_pred C-CCCCCCCceeEEEEeCCeEEEeeeeeeecCC--CcCCEEEEEEEeCCCC-CCCCeEEEEEeCCCCCeeeccccccccC
Q 015286 158 N-AGSDVVGMKCKADRVDGGYIINGNKMWCTNG--PVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGM 233 (410)
Q Consensus 158 ~-~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~--~~ad~~~v~a~~~~~~-~~~~~~~flV~~~~~gv~~~~~~~~~Gl 233 (410)
+ +|||..+++|++++++|||+|||+|.|+|++ +.||+++|.++++++. +..++++|+||.+.|||++.++|+++|+
T Consensus 560 ~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~~~~~~~~s~flV~~~~pGv~i~~~~~~~G~ 639 (822)
T PLN02876 560 QVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFNAPKHKQQSMILVDIQTPGVQIKRPLLVFGF 639 (822)
T ss_pred CccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCCCCCCCCcceEEEEeCCCCCceeecccceecc
Confidence 7 6899999999999999999999999999998 5799999999986432 3356889999999999999889999999
Q ss_pred CCC--CceeEEeceeeeCCCCcccCCCchHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHH
Q 015286 234 RGS--DTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQ 311 (410)
Q Consensus 234 ~~~--~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~ 311 (410)
+++ ++++|.|+||+||++++++..++|+......+..+|+..++.++|+++++++.+++|+++|++||+||.++|.+|
T Consensus 640 r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~vG~a~~ale~a~~ya~~R~~fg~~i~~~q~vq 719 (822)
T PLN02876 640 DDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMQLMVQRALSRKAFGKLIAQHGSFL 719 (822)
T ss_pred CCCCCCeeEEEEcceeechhheecCCCchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhCHHHH
Confidence 974 588999999999999999988889888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCC--CChhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCc
Q 015286 312 GKTADMYTALQSSRSYVYSVARDCDNGK--VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYE 389 (410)
Q Consensus 312 ~~la~~~~~l~a~~~~~~~a~~~~d~~~--~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~ 389 (410)
++|++|.+.++++|++++.+++.++... .....++++|+++++.+.++++.++|+|||.||+++++++|+|||++...
T Consensus 720 ~~la~~~~~leaar~l~~~aa~~~d~~~~~~~~~~~a~aK~~a~e~a~~va~~a~qv~Gg~G~~~e~~l~r~~Rdar~~~ 799 (822)
T PLN02876 720 SDLAKCRVELEQTRLLVLEAADQLDRLGNKKARGIIAMAKVAAPNMALKVLDMAMQVHGAAGVSSDTVLAHLWATARTLR 799 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCcchHHHHHHhhhhcc
Confidence 9999999999999999999999998732 34567899999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHhhcc
Q 015286 390 IGAGTSEIRRMIIGRALLKQ 409 (410)
Q Consensus 390 ~~~G~~~~~~~~i~~~~~~~ 409 (410)
+++|++++++..|++.+++.
T Consensus 800 i~~Gt~e~~~~~ia~~~~~~ 819 (822)
T PLN02876 800 IADGPDEVHLGTIAKLELQR 819 (822)
T ss_pred cccChHHHHHHHHHHHHHHh
Confidence 99999999999999999864
No 28
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=9.3e-59 Score=472.65 Aligned_cols=369 Identities=22% Similarity=0.325 Sum_probs=330.5
Q ss_pred CcHHHHHHHHHHHHHHHhc--c-CcchhhhhhcCCCC-CcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHh
Q 015286 32 FDDTQLQFKESVGQFAREN--I-APRAANIDQSNSFP-QDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR 107 (410)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~--~-~~~~~~~d~~~~~p-~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~ 107 (410)
.+++..++++++++|+.+. + .|....+++.+.+| . ++++.+.+.|++++.+|++ ++.+...++|++++
T Consensus 61 l~~~~~~~r~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~--~l~~~~~~~g~~~~~~~~~------~~~~~~~~~e~l~~ 132 (686)
T PLN02636 61 MRGKHRDIQEKIYEFFNSRPDLQTPVEISKDEHRELCMR--QLTGLVREAGIRPMKYLVE------DPAKYFAITEAVGS 132 (686)
T ss_pred cCCcHHHHHHHHHHHHHhCccccCCchhhHHHhhhhHHH--HHHHHHHhcCccccccccC------CHHHHHHHHHHHHh
Confidence 3444558999999998877 3 56666677777777 6 8889999999999999976 78899999999999
Q ss_pred cccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEe--CCeEEEe-----
Q 015286 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN----- 180 (410)
Q Consensus 108 ~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~--~~g~~ln----- 180 (410)
.|++++..+..|..++...|..+|+++|+++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 133 ~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~~ 212 (686)
T PLN02636 133 VDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDG 212 (686)
T ss_pred hchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCCC
Confidence 999888778888768888999999999999999999999999999999999999999999999998 7889999
Q ss_pred eeeeeecCCCc-CCEEEEEEEeCCC------CCCCCeEEEEEeCC-------CCCeeeccccccccCCCCCceeEEecee
Q 015286 181 GNKMWCTNGPV-AQTLVVYAKTDIK------AGSKGITAFIIEKG-------MPGFSTAQKLDKLGMRGSDTCELVFENC 246 (410)
Q Consensus 181 G~k~~~s~~~~-ad~~~v~a~~~~~------~~~~~~~~flV~~~-------~~gv~~~~~~~~~Gl~~~~s~~v~f~~v 246 (410)
|+|+|++|++. ||+++|+|++... ++..|+++|+||.+ .|||++.+.++++|+++.+++.|.||||
T Consensus 213 g~K~wI~na~~~ad~~vV~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~FdnV 292 (686)
T PLN02636 213 AIKWWIGNAAVHGKFATVFARLKLPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRSV 292 (686)
T ss_pred eEEEeecCCcccCCEEEEEEEecCCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEEEeeE
Confidence 99999999965 9999999998622 12568999999987 5999999999999999999999999999
Q ss_pred eeCCCCcccC----------------CCchHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc------c
Q 015286 247 FVPNENVLGQ----------------EGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRP------L 304 (410)
Q Consensus 247 ~VP~~~~lg~----------------~~~g~~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~------l 304 (410)
+||.+++|+. .++|+...+..+..+|+.+++.++|+++++++.+++|+++|+|||.| |
T Consensus 293 rVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~qFg~p~~~e~~I 372 (686)
T PLN02636 293 RIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYSLLRQQFGPPKQPEISI 372 (686)
T ss_pred EECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCEeCCCCCCCCCcc
Confidence 9999999953 25688888899999999999999999999999999999999999999 9
Q ss_pred ccchhHHHHHHHHHHHHHHHH----HHHHHHHHHhhCCC-----CChhhhhHHHHHHHHHHHHHHHHHHHhhccccccCc
Q 015286 305 GEFQFIQGKTADMYTALQSSR----SYVYSVARDCDNGK-----VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNE 375 (410)
Q Consensus 305 ~~~~~v~~~la~~~~~l~a~~----~~~~~a~~~~d~~~-----~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~ 375 (410)
.++|.+|++|++|.+.+++++ .+++.+++..+.+. +....++++|+++++.+.++++.|+|+|||+||+.+
T Consensus 373 ~d~q~vQ~~La~~la~~~a~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~rq~~GG~Gy~~~ 452 (686)
T PLN02636 373 LDYQSQQHKLMPMLASTYAFHFATEYLVERYSEMKKTHDDQLVADVHALSAGLKAYITSYTAKALSTCREACGGHGYAAV 452 (686)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCc
Confidence 999999999999999999954 66666666655433 245678999999999999999999999999999999
Q ss_pred chHHHHHhhhccCcccCChHHHHHHHHHHHhhc
Q 015286 376 YATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 376 ~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
++++++|||++...+++|+|+|++.+++|.+++
T Consensus 453 ~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~ 485 (686)
T PLN02636 453 NRFGSLRNDHDIFQTFEGDNTVLLQQVAADLLK 485 (686)
T ss_pred CcHHHHHHHhhhheeecChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999876
No 29
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=2.1e-58 Score=448.28 Aligned_cols=356 Identities=22% Similarity=0.279 Sum_probs=314.6
Q ss_pred HHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccchhHHHHhhhh
Q 015286 42 SVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSN 121 (410)
Q Consensus 42 ~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~~s~~~~~~~~~~ 121 (410)
++++++ +.+.+++.+.|+.+.+|. +.|++|.+.||+++.+|++|||.|+++.+...++|++++.|+++++++.+|.
T Consensus 2 ~~~~~~-~~~~~~a~~~d~~~~~p~--~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~- 77 (377)
T cd01163 2 RARPLA-ARIAEGAAERDRQRGLPY--EEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHF- 77 (377)
T ss_pred hHHHHH-HHHhhhhhhhhhcCCCCH--HHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH-
Confidence 456674 568888899999999999 9999999999999999999999999999999999999999999999888876
Q ss_pred HHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCCCcCCEEEEEEEe
Q 015286 122 LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 201 (410)
Q Consensus 122 ~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~~~ad~~~v~a~~ 201 (410)
.+...+..+|+++|+++|++++.+|+.+ +.+++||++|+ .....+++++++|||+|||+|.|+|++.+||+++|.+++
T Consensus 78 ~~~~~l~~~g~~~~~~~~l~~~~~g~~~-~~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~ 155 (377)
T cd01163 78 GFVEALLLAGPEQFRKRWFGRVLNGWIF-GNAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALD 155 (377)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhCCCeE-EEeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEc
Confidence 5557888999999999999999999865 46999999775 556777788888999999999999999999999999986
Q ss_pred CCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhhcHHHHHHHHHHHH
Q 015286 202 DIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLG 281 (410)
Q Consensus 202 ~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~~~rl~~aa~~~G 281 (410)
++ .+..+|+||++.|||++.+.|+++|++++++++|.|+||+||+++++|.++.++. ....+...++.+++.++|
T Consensus 156 ~~----~~~~~~lV~~~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~-~~~~~~~~~l~~aa~~lG 230 (377)
T cd01163 156 EE----GKLVFAAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDR-GTLLTAIYQLVLAAVLAG 230 (377)
T ss_pred CC----CcEEEEEEeCCCCceeecCCcccccCccCCcceEEEeeEEECHHHccCCCccccc-cccccHHHHHHHHHHHHH
Confidence 43 3567899999999999999999999999999999999999999999998887754 233455778999999999
Q ss_pred HHHHHHHHHHHHHHhhh-hcCC----ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC------------CChhh
Q 015286 282 IMQACLDVVLPYVRQRE-QFGR----PLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK------------VDPKD 344 (410)
Q Consensus 282 ~a~~al~~~~~~~~~R~-~~g~----~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~------------~~~~~ 344 (410)
+++++++.+++|+++|+ +||+ ++.++|.+|+++++|.++++++|++++.+++.+|++. .....
T Consensus 231 ~a~~al~~~~~~~~~R~~~~g~~~~~~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~ 310 (377)
T cd01163 231 IARAALDDAVAYVRSRTRPWIHSGAESARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTAEARGEAALA 310 (377)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 99999999999999995 6775 5789999999999999999999999999999887641 12345
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhcc
Q 015286 345 CAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 409 (410)
Q Consensus 345 ~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 409 (410)
++++|+++++.+.++++.++|+|||.||+++++++|+|||++...+|...+ -...+++..++.+
T Consensus 311 ~~~aK~~~~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~h~~~~-~~~~~~~~~~~~~ 374 (377)
T cd01163 311 VAAAKVVVTRLALDATSRLFEVGGASATAREHNLDRHWRNARTHTLHNPVI-YKERAVGDYALNG 374 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchhhccccCCcchhhhhhhhhccCHHH-HHHHHhchhhcCC
Confidence 779999999999999999999999999999999999999999999998874 5556777766654
No 30
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-58 Score=401.58 Aligned_cols=380 Identities=30% Similarity=0.490 Sum_probs=354.5
Q ss_pred cCCCcCCCCCCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHH
Q 015286 21 HSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCI 100 (410)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~ 100 (410)
+.+.+...+++++||+ .+++.+|+++++++.|...+..+...||+ +++.++.+.|++|..+ +.||-.|.+......
T Consensus 45 ~qD~~~l~dqLT~dE~-air~~~Reycq~~l~Prvtea~r~e~F~~--~i~pemGsmGvlG~ti-kGYGCaG~S~vaygl 120 (432)
T KOG0138|consen 45 WQDPLVLEDQLTEDEI-AIRDTFREYCQERLMPRVTEANRNEVFDR--EIIPEMGSMGVLGPTI-KGYGCAGVSSVAYGL 120 (432)
T ss_pred ccchhhhhhhcCHHHH-HHHHHHHHHHHHHhhhHHHHHhhhccCCh--hhhhhhhccccccCcc-cCcCCCchHHHHHHH
Confidence 3344566688888888 99999999999999999999999999999 9999999999999988 789999999999999
Q ss_pred HHHHHHhcccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCe--EE
Q 015286 101 AMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YI 178 (410)
Q Consensus 101 v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g--~~ 178 (410)
+.+|+.+.|.+....+.+|++++..+|..+|+++||++|+|.+++|+.++||++|||.+|||..++.|+|++++.+ |+
T Consensus 121 ~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyk 200 (432)
T KOG0138|consen 121 LAREVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYK 200 (432)
T ss_pred HHHHHHHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEE
Confidence 9999999999888778888889999999999999999999999999999999999999999999999999999988 99
Q ss_pred EeeeeeeecCCCcCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCC
Q 015286 179 INGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG 258 (410)
Q Consensus 179 lnG~k~~~s~~~~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~ 258 (410)
|||+|.|++|++.||+++|+||...+ ..+.-|+|+++.+|++.-....++++|.+.++.|.+|||+||++++|....
T Consensus 201 lNGsKtWI~nsp~aDl~vvwAr~~t~---n~I~GFi~~k~~~GL~apkI~gK~sLRas~tG~Ilmd~V~VPeE~~LPg~~ 277 (432)
T KOG0138|consen 201 LNGSKTWITNSPMADLFVVWARCETD---NKIRGFILEKGMRGLSAPKIEGKFSLRASATGMILMDGVEVPEENLLPGAS 277 (432)
T ss_pred ECCeeeeecCCcccceEEEEEecccC---CceeeEEEecCCCCCcCCCcCCeeeeeecccCceeecCCcCChhhcCCCcc
Confidence 99999999999999999999998743 467789999999999998889999999999999999999999999995433
Q ss_pred chHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 015286 259 KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG 338 (410)
Q Consensus 259 ~g~~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~ 338 (410)
++.--...++..|.+++-..+|+++.+++.+.+|..+|+|||.|++.+|.+|.+|++|..++...-.++++.....|.+
T Consensus 278 -s~qgpf~cLnnaR~giAWg~lGase~c~~~arqY~ldRkQFG~PLAanQL~Q~Kladmltei~lgl~~clrl~rLkd~g 356 (432)
T KOG0138|consen 278 -SLQGPFGCLNNARYGIAWGALGASEFCLHTARQYTLDRKQFGRPLAANQLIQKKLADMLTEITLGLQACLRLGRLKDQG 356 (432)
T ss_pred -ccCCchhhhhhhhhheeehhchhHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 3333456778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhc
Q 015286 339 KVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 339 ~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
......+++.|.+.+.-+.++++.+.+++||.|+.+++-+.|++-|....-.++|+-||+..+++|.+.+
T Consensus 357 ~~tp~qiSl~Krn~~gKaleiAr~~RdmLGgNGI~deyhv~rh~~nLE~vnTYEGThDihaLilGRaiTG 426 (432)
T KOG0138|consen 357 KATPEQISLLKRNNCGKALEIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITG 426 (432)
T ss_pred cCChhhhHHHhhccchhHHHHHHHHHHHhcCCcchhHHHHHHHHcCccceecccccchHHHHhhhhhhhh
Confidence 8888899999999999999999999999999999999999999999999999999999999999999865
No 31
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=1e-56 Score=456.67 Aligned_cols=347 Identities=19% Similarity=0.243 Sum_probs=312.9
Q ss_pred hhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccchhHHHHhhhhHHHHHHHhcCCHHHH
Q 015286 57 NIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQK 136 (410)
Q Consensus 57 ~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~ 136 (410)
..|+...++. +.++++.+.|+++..+|++ |.+ ++...+.++|++++.|++++..+..|.+++...|..+|+++|+
T Consensus 99 s~~~~~~~~~--~~~~~l~~~g~~~~~~pe~--g~~-~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk 173 (680)
T PLN02312 99 TMEQQREITM--KRILYLLERGVFRGWLTET--GPE-AELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHH 173 (680)
T ss_pred CHHHHHHhHH--HHHHHHHHhhhcCCCCCCC--CCc-cHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHH
Confidence 3355566777 8999999999999999985 333 6788889999999999988877788876788889999999999
Q ss_pred hhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEe--CCeEEEe-----eeeeeecCC-CcCCEEEEEEEeCCCCCCC
Q 015286 137 DKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKMWCTNG-PVAQTLVVYAKTDIKAGSK 208 (410)
Q Consensus 137 ~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~--~~g~~ln-----G~k~~~s~~-~~ad~~~v~a~~~~~~~~~ 208 (410)
++|+|.+.+|+.++|+++|||++|||+.+++|+|+++ +|+|+|| |+|+|++|+ ..||+++|+|++..+.+..
T Consensus 174 ~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~~~~~ 253 (680)
T PLN02312 174 DKWLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGKNE 253 (680)
T ss_pred HHHHHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCCCCCC
Confidence 9999999999999999999999999999999999998 4679999 799999998 7999999999997655567
Q ss_pred CeEEEEEeC---C---CCCeeeccccccccCCCCCceeEEeceeeeCCCCcccC----------------CCchHHHHHh
Q 015286 209 GITAFIIEK---G---MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ----------------EGKGVYVMMS 266 (410)
Q Consensus 209 ~~~~flV~~---~---~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~----------------~~~g~~~~~~ 266 (410)
|+++|+||. + .|||++.+.++++|+++.+++.|.||||+||.+++|+. ++.|+.++..
T Consensus 254 Gv~~FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~ 333 (680)
T PLN02312 254 GVHAFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLA 333 (680)
T ss_pred CeEEEEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHHH
Confidence 899999982 3 79999999999999999999999999999999999983 5678888888
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC----c---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 015286 267 GLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGR----P---LGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK 339 (410)
Q Consensus 267 ~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~----~---l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~ 339 (410)
.+..+|+.+++.++|+++++++.+++|+++|+|||. | |.++|.+|++|++|.+.+++++.....+.+.++.+.
T Consensus 334 ~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a~~~~a~~l~~~~~~~~ 413 (680)
T PLN02312 334 PLTSGRVTIAVSAIYSSKVGLAIAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMSFAANDLKMIYVKRT 413 (680)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999995 4 999999999999999999998777777666655432
Q ss_pred -----CChhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhc
Q 015286 340 -----VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 340 -----~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
+....++++|+++++.+.++++.|+|+|||+||+.+++++++|||++...+++|+|+|++.+++|.+++
T Consensus 414 ~~~~~~~~~~as~aKa~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~ 487 (680)
T PLN02312 414 PESNKAIHVVSSGFKAVLTWHNMRTLQECREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVLMQQVSKALLA 487 (680)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHhhhhheeecCcHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999999999999999999998875
No 32
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=6.7e-56 Score=434.40 Aligned_cols=355 Identities=28% Similarity=0.435 Sum_probs=312.6
Q ss_pred HHHHHhccCcchhhhhhcCC------CCC-cHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccchhHHH
Q 015286 44 GQFARENIAPRAANIDQSNS------FPQ-DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSY 116 (410)
Q Consensus 44 ~~~~~~~~~~~~~~~d~~~~------~p~-~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~~s~~~~~ 116 (410)
.+++..+ .|...++|+.+. +|+ .+++++++.+.||+++ +|+++||.| ......+.+.++..+...+..+
T Consensus 38 ~~~a~~~-~P~~~~~d~~g~r~~~v~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~p~ 113 (418)
T cd01154 38 ARLADRN-PPVLEMWDRWGRRVDRVWVHPAWHALMRRLIEEGVINI-EDGPAGEGR--RHVHFAAGYLLSDAAAGLLCPL 113 (418)
T ss_pred HHHhhcC-CCcccCCCCCCCcCCeEEeCHHHHHHHHHHHHcCCccC-CchhhCCCc--HHHHHHHHHHHHhcchhccCcH
Confidence 3444444 677888888877 673 2488899999999999 777777655 3444456777787777666655
Q ss_pred HhhhhHHHHHHHhcCCHHHHhhhchhhhcCc----eeeEEEecCCCCCCCCCCceeEEEEe-CCeEEEeeeeeeecCCCc
Q 015286 117 GAHSNLCINQLVRHGSPAQKDKYLPKLISGE----HVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPV 191 (410)
Q Consensus 117 ~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~----~~~~~~~tep~~Gs~~~~~~t~a~~~-~~g~~lnG~k~~~s~~~~ 191 (410)
.+|. .+...|..+|+++|+ +|+|++++|+ .++|+++|||++|||+..++|+|+++ +|+|+|||+|+|+|++ .
T Consensus 114 ~~~~-~~~~~l~~~g~~~~~-~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a-~ 190 (418)
T cd01154 114 TMTD-AAVYALRKYGPEELK-QYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP-L 190 (418)
T ss_pred HHHH-HHHHHHHHhCcHHHH-HHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-c
Confidence 6666 677889999988865 6999999997 89999999999999999999999999 8899999999999999 9
Q ss_pred CCEEEEEEEeCCC-CCCCCeEEEEEeCCCC-----CeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHH
Q 015286 192 AQTLVVYAKTDIK-AGSKGITAFIIEKGMP-----GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMM 265 (410)
Q Consensus 192 ad~~~v~a~~~~~-~~~~~~~~flV~~~~~-----gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~ 265 (410)
||+++|+|+++++ ++.+++++|+||++.| ||++.+.|+++|++++++++|.|+||. ++++|.+++|+.++.
T Consensus 191 Ad~~lv~Art~~~~~~~~gls~flVp~~~~~~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv~---~~~lG~~g~G~~~~~ 267 (418)
T cd01154 191 ADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDAE---AYLIGDEGKGIYYIL 267 (418)
T ss_pred cCEEEEEEECCCCCCCCCcEEEEEEeccCCCCCCCCeEecccccccCCCCCCeEEEEecCcC---ccccCCCCccHHHHH
Confidence 9999999998754 3457899999999875 999999999999999999999999983 789999999999999
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC----
Q 015286 266 SGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVD---- 341 (410)
Q Consensus 266 ~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~---- 341 (410)
..++..|+.+++.++|+++++++.+++|+++|++||+++.++|.+|++|+++.+++++++++++.+++.++.....
T Consensus 268 ~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~l~~~~~v~~~La~~~~~~eaar~l~~~aa~~~~~~~~~~~~~ 347 (418)
T cd01154 268 EMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGKPLIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAAADKPVE 347 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988864211
Q ss_pred ----hhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhc
Q 015286 342 ----PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 342 ----~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
+...+++|+++++.+.++++.+++++||.||+++++++|+|||++...|++|+++|++..+.|.+.|
T Consensus 348 ~~~~r~~~~~aK~~~~e~a~~v~~~a~~i~Gg~G~~~~~~l~r~~RDa~~~~i~~Gt~~i~~~~~~r~~~~ 418 (418)
T cd01154 348 AHMARLATPVAKLIACKRAAPVTSEAMEVFGGNGYLEEWPVARLHREAQVTPIWEGTGNIQALDVLRVLVK 418 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEcCCChHHHHHhcCcCcceeccHHHHHHHHHHHHhcC
Confidence 2246779999999999999999999999999999999999999999999999999999999998753
No 33
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=1.9e-55 Score=426.32 Aligned_cols=347 Identities=20% Similarity=0.270 Sum_probs=300.2
Q ss_pred HHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccchhHHHHhhhhH
Q 015286 43 VGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNL 122 (410)
Q Consensus 43 ~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~~s~~~~~~~~~~~ 122 (410)
+++++ +.+++.+.+.|+.+.||. +.|+.|++.||+++.+|++|||.|+++.+...++|+|++.|+++++++..+. +
T Consensus 3 ~~~~~-~~~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~ 78 (370)
T cd01159 3 AEDLA-PLIRERAPEAERARRLPD--EVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-T 78 (370)
T ss_pred HHHHH-HHHHHhHHHHHHcCCCCH--HHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-H
Confidence 45553 457788899999999999 9999999999999999999999999999999999999999999998766554 5
Q ss_pred HHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCCCcCCEEEEEEEeC
Q 015286 123 CINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 202 (410)
Q Consensus 123 ~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~~~ad~~~v~a~~~ 202 (410)
....+..+++++|++.|++.. .+ ..+ +..++.++|++++|||+|||+|.|+|++.++|+++|.++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~-~~--~~~----------g~~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~ 145 (370)
T cd01159 79 HSRMLAAFPPEAQEEVWGDGP-DT--LLA----------GSYAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVE 145 (370)
T ss_pred HHHHHHhCCHHHHHHHhCCCC-Cc--eEE----------eeecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECC
Confidence 556777889999998887642 11 111 11234678999999999999999999999999999999986
Q ss_pred CCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCC------chHH---HHHhhhcHHHH
Q 015286 203 IKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG------KGVY---VMMSGLDLERL 273 (410)
Q Consensus 203 ~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~------~g~~---~~~~~~~~~rl 273 (410)
++++..++++|+||++ ||++.+.|+++||+++++++|.|+||+||++++|+..+ .+.. +.......+++
T Consensus 146 ~~~~~~~~~~~lV~~~--Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 223 (370)
T cd01159 146 DDDGGPLPRAFVVPRA--EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFPL 223 (370)
T ss_pred CCCCCCcceEEEEEhH--HCEEecccccccccccCCCcEEEcceEcCccceecccccccCCCCCCCCccccCchHHHHHH
Confidence 4434567899999987 99999999999999999999999999999999997542 2211 23345567889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc---CCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC--------Ch
Q 015286 274 VLAAGPLGIMQACLDVVLPYVRQREQF---GRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV--------DP 342 (410)
Q Consensus 274 ~~aa~~~G~a~~al~~~~~~~~~R~~~---g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~--------~~ 342 (410)
.++++++|+++++++.+++|+++|.+| |+|++++|.+|+++++|.+.++++|++++.+++.++.+.. ..
T Consensus 224 ~~aa~~lG~a~~~l~~~~~~~~~R~~~~~~g~~i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~~~~~~~~~~~~~ 303 (370)
T cd01159 224 SFAAVSLGAAEGALAEFLELAGKRVRQYGAAVKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHALAGGPIDVEER 303 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcccCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 999999999999999999999999987 6789999999999999999999999999999998876421 12
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChH-HHHHHHHHHHhhc
Q 015286 343 KDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTS-EIRRMIIGRALLK 408 (410)
Q Consensus 343 ~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~-~~~~~~i~~~~~~ 408 (410)
..++++|+++++.+.++++.+++++||.||.++++++|+|||++...+|+|++ ++++..|+|++++
T Consensus 304 ~~~~~aK~~~~e~~~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~~~~~~~~~~~~~~~~l~ 370 (370)
T cd01159 304 ARIRRDAAYAAKLSAEAVDRLFHAAGGSALYTASPLQRIWRDIHAAAQHAALNPETAAEAYGRALLG 370 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhcccCCcHHHHHHHHHHHhhhhccCcchHHHHHHHHhcC
Confidence 35778999999999999999999999999999999999999999999999999 9999999999875
No 34
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=5.3e-52 Score=410.52 Aligned_cols=328 Identities=23% Similarity=0.355 Sum_probs=283.2
Q ss_pred cHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHH-HhcccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhc
Q 015286 67 DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI-SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLIS 145 (410)
Q Consensus 67 ~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~l-a~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~ 145 (410)
.+++++.+.+.||.++.+++++| ....-...+.+-| +..++... +....+.+...+..+++++|+++|+|++.+
T Consensus 88 ~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~g~~--cp~~mT~~a~~~l~~~~~e~~~~~lp~l~s 162 (538)
T PRK11561 88 WHLLMQGLCANRVHNLAWEEDAR---SGAFVARAARFMLHAQVEAGTL--CPITMTFAATPLLLQMLPAPFQDWLTPLLS 162 (538)
T ss_pred HHHHHHHHHHcCCccCCCCCccC---chHHHHHHHHHHHHhhhhHHhh--chHHHHHHHHHHHHhcCHHHHHHHHHHHhC
Confidence 45777778889999999988775 2222222223333 33333222 222223455566677889999999999999
Q ss_pred Cc-------------eeeEEEecCCCCCCCCCCceeEEEEe-CCeEEEeeeeeeecCCCcCCEEEEEEEeCCCCCCCCeE
Q 015286 146 GE-------------HVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGIT 211 (410)
Q Consensus 146 g~-------------~~~~~~~tep~~Gs~~~~~~t~a~~~-~~g~~lnG~k~~~s~~~~ad~~~v~a~~~~~~~~~~~~ 211 (410)
|+ .+.++++|||++|||+..++|+|+++ +|+|+|||+|+|+| ++.||+++|+|+++ .+++
T Consensus 163 g~~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt~-----~Gls 236 (538)
T PRK11561 163 DRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQAK-----GGLS 236 (538)
T ss_pred CCcccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEEC-----CceE
Confidence 87 45699999999999999999999995 66799999999999 68999999999985 3799
Q ss_pred EEEEeCCCC-----CeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 015286 212 AFIIEKGMP-----GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAC 286 (410)
Q Consensus 212 ~flV~~~~~-----gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~~~rl~~aa~~~G~a~~a 286 (410)
+|+||++.| ||++...++++|++++++++|.|+||. +++||.+++|+..+...++..|+..++.++|+++++
T Consensus 237 ~FlVp~~~p~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv~---~~llG~~g~G~~~i~~~l~~~Rl~~a~~a~G~a~~A 313 (538)
T PRK11561 237 CFFVPRFLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDAI---GWLLGEEGEGIRLILKMGGMTRFDCALGSHGLMRRA 313 (538)
T ss_pred EEEEECCCCCCCCCceEEecccccccCCCCceeEEEECCHH---HHHCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988 799988999999999999999999993 789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC------hhhhhHHHHHHHHHHHHHH
Q 015286 287 LDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVD------PKDCAGVILCAAERATQVT 360 (410)
Q Consensus 287 l~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~------~~~~~~ak~~~~~~a~~~~ 360 (410)
++.+++|+++|++||+||+++|.+|++|++|.+++++++++++.+++.+|.+.+. .....++|+++++.+.+++
T Consensus 314 l~~A~~yA~~R~~FG~~L~~~q~vq~~LAdm~~~ieaar~l~~~aa~~~d~~~~~~~~~~~rl~t~~aK~~~~e~a~~v~ 393 (538)
T PRK11561 314 FSVAIYHAHQRQVFGKPLIEQPLMRQVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGIPFV 393 (538)
T ss_pred HHHHHHHHHhCccCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999876421 2234579999999999999
Q ss_pred HHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhc
Q 015286 361 LQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 361 ~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
+.++|++||.||+++++++|+|||++..+|++|+++|++..+.|.+.+
T Consensus 394 ~~Amqv~GG~Gy~ee~~lerl~RDa~v~~I~eGt~~i~~ldv~r~l~~ 441 (538)
T PRK11561 394 AEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNK 441 (538)
T ss_pred HHHHHhcCCccCCCCcHHHHHHHHHhhhhcccCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999875
No 35
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=1.6e-51 Score=392.93 Aligned_cols=324 Identities=42% Similarity=0.692 Sum_probs=295.7
Q ss_pred HHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccchhH
Q 015286 35 TQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGL 114 (410)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~~s~~~ 114 (410)
++.++++.+++|+.+.+.+.....+. ++. ..|+.+.+.|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~g~~---------------------------------- 42 (327)
T cd00567 2 EQRELRDSAREFAAEELEPYARERRE---TPE--EPWELLAELGLL---------------------------------- 42 (327)
T ss_pred hHHHHHHHHHHHHHHhccccHHhHHh---hCC--CCHHHHHHHHHH----------------------------------
Confidence 45689999999999999888775554 344 456777788877
Q ss_pred HHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCCCcCCE
Q 015286 115 SYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQT 194 (410)
Q Consensus 115 ~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~~~ad~ 194 (410)
++..+|..+|+++|+++|++.+.+|+.++++++|||.+|++...+.++++++++||+|||+|.|+|++..||+
T Consensus 43 -------~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~ 115 (327)
T cd00567 43 -------LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADL 115 (327)
T ss_pred -------hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCE
Confidence 3334677789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCC-CCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhhcHHHH
Q 015286 195 LVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERL 273 (410)
Q Consensus 195 ~~v~a~~~~~~-~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~~~rl 273 (410)
++|.++++.++ +..++.+|+||++.|||++.+.|+++|+++++++.+.|+||+||++++++..+.++......+...++
T Consensus 116 ~lv~a~~~~~~~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~ 195 (327)
T cd00567 116 FIVLARTDEEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRL 195 (327)
T ss_pred EEEEEEeCCCCCCCCceEEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHHH
Confidence 99999986543 34568899999999999999999999999999999999999999999999888888778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-ChhhhhHHHHHH
Q 015286 274 VLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV-DPKDCAGVILCA 352 (410)
Q Consensus 274 ~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~-~~~~~~~ak~~~ 352 (410)
.++++++|+++++++.+++|+++|.+||.|+.++|.+|++++++.+.+++++++++.+++.++.... ....+.++|.++
T Consensus 196 ~~aa~~~G~a~~al~~~~~~~~~r~~~g~~~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~k~~~ 275 (327)
T cd00567 196 LLAAVALGAARAALDEAVEYAKQRKQFGKPLAEFQAVQFKLADMAAELEAARLLLYRAAWLLDQGPDEARLEAAMAKLFA 275 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999988754 567788999999
Q ss_pred HHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHH
Q 015286 353 AERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGR 404 (410)
Q Consensus 353 ~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~ 404 (410)
++.+.++++.++++|||.||.++++++|+|||++...+++|++++++..+++
T Consensus 276 ~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~G~~~~~~~~~~~ 327 (327)
T cd00567 276 TEAAREVADLAMQIHGGRGYSREYPVERYLRDARAARIAEGTAEIQRLIIAR 327 (327)
T ss_pred HHHHHHHHHHHHHHccCccccCCCHHHHHHHhhhcceeecCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999988764
No 36
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=3.3e-50 Score=407.46 Aligned_cols=300 Identities=20% Similarity=0.253 Sum_probs=269.2
Q ss_pred ccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEe--CCeEEEe-----e
Q 015286 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----G 181 (410)
Q Consensus 109 ~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~--~~g~~ln-----G 181 (410)
+++....+..|.+++...|..+|+++|+++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+|| |
T Consensus 88 ~~~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g 167 (646)
T PTZ00460 88 CPQGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEA 167 (646)
T ss_pred ccCCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCe
Confidence 34444445566657777888999999999999999999999999999999999999999999996 5779998 9
Q ss_pred eeeeecC-CCcCCEEEEEEEeCCCCCCCCeEEEEEeC-------CCCCeeeccccccccCCCCCceeEEeceeeeCCCCc
Q 015286 182 NKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEK-------GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENV 253 (410)
Q Consensus 182 ~k~~~s~-~~~ad~~~v~a~~~~~~~~~~~~~flV~~-------~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~ 253 (410)
+|+|++| +..||+++|+|++..+.+..|+++|+||. +.|||++.+.++++|+++.+++.+.||||+||.+++
T Consensus 168 ~K~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nl 247 (646)
T PTZ00460 168 VKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSL 247 (646)
T ss_pred EEEccCCCCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHh
Confidence 9999998 68999999999997655567899999993 249999999999999999999999999999999999
Q ss_pred ccC------CCc----h-HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC------ccccchhHHHHHHH
Q 015286 254 LGQ------EGK----G-VYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGR------PLGEFQFIQGKTAD 316 (410)
Q Consensus 254 lg~------~~~----g-~~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~------~l~~~~~v~~~la~ 316 (410)
||. .|. | +......+...|+.+++.++|+++++++.+++|+++|+|||+ ||+++|.+|++|++
T Consensus 248 Lg~~~~v~~~G~~~~~g~~~~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R~QFg~~~~~E~pI~~yQ~~Q~rLa~ 327 (646)
T PTZ00460 248 LARYIKVSEDGQVERQGNPKVSYASMMYMRNLIIDQYPRFAAQALTVAIRYSIYRQQFTNDNKQENSVLEYQTQQQKLLP 327 (646)
T ss_pred CCcccccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCcHhhhHHHHHHHHH
Confidence 985 332 3 666777788999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCC------CC------ChhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhh
Q 015286 317 MYTALQSSRSYVYSVARDCDNG------KV------DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD 384 (410)
Q Consensus 317 ~~~~l~a~~~~~~~a~~~~d~~------~~------~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd 384 (410)
+.+.+++++.+.+.+++.++.. .+ ....++++|+++++.+.++++.|+|+|||+||+.+++++++|||
T Consensus 328 ~la~~~A~r~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd 407 (646)
T PTZ00460 328 LLAEFYACIFGGLKIKELVDDNFNRVQKNDFSLLQLTHAILSAAKANYTYFVSNCAEWCRLSCGGHGYAHYSGLPAIYFD 407 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCcHHHHHHH
Confidence 9999999999999998887642 11 24568899999999999999999999999999999999999999
Q ss_pred hccCcccCChHHHHHHHHHHHhhc
Q 015286 385 AKLYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 385 ~~~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
++...+++|+++|++.++++.+++
T Consensus 408 a~~~~t~eG~n~vl~~~iar~ll~ 431 (646)
T PTZ00460 408 MSPNITLEGENQIMYLQLARYLLK 431 (646)
T ss_pred hccceeecCcHHHHHHHHHHHHHH
Confidence 999999999999999999998875
No 37
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=8.1e-49 Score=385.27 Aligned_cols=292 Identities=27% Similarity=0.316 Sum_probs=264.4
Q ss_pred HHHHc-CCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeE
Q 015286 73 LMGNF-NLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151 (410)
Q Consensus 73 ~l~~~-Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~ 151 (410)
.++++ ||+++.+|++|||.|+++.+.+.++|++++.+++..+.+..|..++...+..+|+++||++|||++++|+.+++
T Consensus 58 ~~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~i~A 137 (520)
T PTZ00457 58 NDKILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTIMMG 137 (520)
T ss_pred chHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcEEE
Confidence 36799 99999999999999999999999999999988877665555654666778889999999999999999999999
Q ss_pred EEecCCCCCCCCCCceeEEEEe-CCeEEEeeeeeeecCCCcCCEEEEEEEeCC----CCC---CCCeEEEEEeCCCCCee
Q 015286 152 LAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDI----KAG---SKGITAFIIEKGMPGFS 223 (410)
Q Consensus 152 ~~~tep~~Gs~~~~~~t~a~~~-~~g~~lnG~k~~~s~~~~ad~~~v~a~~~~----~~~---~~~~~~flV~~~~~gv~ 223 (410)
++++| +.|||...++|+|+++ +|+|+|||+|.|+ ++..||+++|++++++ +.+ ..++++|+||++.|||+
T Consensus 138 ~AltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~g~~~~~git~FlV~~dapGVt 215 (520)
T PTZ00457 138 WATEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEEGATEVSRNSFFICAKDAKGVS 215 (520)
T ss_pred EEeCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCcccccccccCcCceEEEEEECCCCceE
Confidence 99988 8999999999999986 4579999999966 8999999999999853 112 24789999999999999
Q ss_pred eccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc
Q 015286 224 TAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRP 303 (410)
Q Consensus 224 ~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~ 303 (410)
+.. ++|.|||| |.+++||.++.|+......++.+|+.+++.++|+++++++.+++|++
T Consensus 216 v~~------------~eV~FddV--P~~~vLG~~g~G~~~a~~~L~~~Rl~~aA~~vGia~~ale~av~ya~-------- 273 (520)
T PTZ00457 216 VNG------------DSVVFENT--PAADVVGVVGEGFKDAMITLFTEQYLYAASLLGIMKRVVQELRGSNA-------- 273 (520)
T ss_pred Eec------------CEEEECCC--CHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 852 59999997 99999999999999999999999999999999999999999999986
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCChhhhhHHHHHHH---HHHHHHHHHHHHhhccccccCcchHH
Q 015286 304 LGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG-KVDPKDCAGVILCAA---ERATQVTLQAIQCLGGNGYVNEYATG 379 (410)
Q Consensus 304 l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~-~~~~~~~~~ak~~~~---~~a~~~~~~~~~~~Gg~g~~~~~~l~ 379 (410)
+|.||++|++|.+.++++|+++|.+++.+|.+ .+...+++++|+|++ +.+++++++++| ++.|+|
T Consensus 274 ---~QaVq~~LAdma~~ieAarsl~y~AA~~~D~g~~d~~~eAa~ak~~~s~~~e~~~~~~~~~~~--------~~~~~E 342 (520)
T PTZ00457 274 ---EEGATDTVASFACAMYAMESTLYALTANLDLPTEDSLLECTLVSAFVQSTTNQLLSILETATP--------PSTTLE 342 (520)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHhhhhHHHHHHHhhhhcc--------CCccHH
Confidence 48999999999999999999999999999997 457889999999999 889999988877 899999
Q ss_pred HHHhhhccCcccCChHHHHH
Q 015286 380 RLLRDAKLYEIGAGTSEIRR 399 (410)
Q Consensus 380 r~~Rd~~~~~~~~G~~~~~~ 399 (410)
|++||+|.+.|++|++++++
T Consensus 343 ~~~rd~ri~~i~egs~~~l~ 362 (520)
T PTZ00457 343 KCFANARLFLSMMESRDFLY 362 (520)
T ss_pred HHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999998
No 38
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=1.3e-49 Score=403.90 Aligned_cols=315 Identities=23% Similarity=0.266 Sum_probs=282.3
Q ss_pred CHHHHHHHHHHHHhcccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEe
Q 015286 94 GYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV 173 (410)
Q Consensus 94 ~~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~ 173 (410)
++.+...+.|++++.|++++..+..|..++...|..+|+++|+++|+|++.+|+.++|+++|||++|||+.+++|+|+++
T Consensus 80 ~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d 159 (610)
T cd01150 80 DPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYD 159 (610)
T ss_pred CHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEEC
Confidence 67788899999999999887667778767888999999999999999999999999999999999999999999999999
Q ss_pred C--CeEEEe-----eeeeeecCCC-cCCEEEEEEEeCCCCCCCCeEEEEEeCC-------CCCeeeccccccccCCCCCc
Q 015286 174 D--GGYIIN-----GNKMWCTNGP-VAQTLVVYAKTDIKAGSKGITAFIIEKG-------MPGFSTAQKLDKLGMRGSDT 238 (410)
Q Consensus 174 ~--~g~~ln-----G~k~~~s~~~-~ad~~~v~a~~~~~~~~~~~~~flV~~~-------~~gv~~~~~~~~~Gl~~~~s 238 (410)
+ ++|+|| |+|+|++|++ .|++++|+|++..+.+..|+.+|+||.. .|||++.+.++++|+++.++
T Consensus 160 ~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~dn 239 (610)
T cd01150 160 PLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDN 239 (610)
T ss_pred CCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCCCe
Confidence 8 889999 9999999975 5999999999865445678999999963 39999999999999999999
Q ss_pred eeEEeceeeeCCCCcccC----------------CCchHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 015286 239 CELVFENCFVPNENVLGQ----------------EGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGR 302 (410)
Q Consensus 239 ~~v~f~~v~VP~~~~lg~----------------~~~g~~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~ 302 (410)
+.+.||||+||.+++|+. ++.|+..+...+..+|+.+++.++|.++++++.+++|++.|+|||.
T Consensus 240 g~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R~qfg~ 319 (610)
T cd01150 240 GFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFGP 319 (610)
T ss_pred EEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHeeeecCC
Confidence 999999999999999975 5567778888889999999999999999999999999999999999
Q ss_pred c-------cccchhHHHHHHHHHHHHHHHHHHHHHH----H---HHhhCCC-----CChhhhhHHHHHHHHHHHHHHHHH
Q 015286 303 P-------LGEFQFIQGKTADMYTALQSSRSYVYSV----A---RDCDNGK-----VDPKDCAGVILCAAERATQVTLQA 363 (410)
Q Consensus 303 ~-------l~~~~~v~~~la~~~~~l~a~~~~~~~a----~---~~~d~~~-----~~~~~~~~ak~~~~~~a~~~~~~~ 363 (410)
| |.++|.+|++|+++.+..++.+...... . ..++++. +....++++|.++++.+.++++.|
T Consensus 320 ~~~~~e~~I~~~q~~q~rL~~~la~~~a~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~aa~~K~~~t~~a~~~~~~~ 399 (610)
T cd01150 320 KPSDPEVQILDYQLQQYRLFPQLAAAYAFHFAAKSLVEMYHEIIKELLQGNSELLAELHALSAGLKAVATWTAAQGIQEC 399 (610)
T ss_pred CCCCCcchhhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 9999999999999999999876443322 2 2333331 234568899999999999999999
Q ss_pred HHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhc
Q 015286 364 IQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 364 ~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
+|+|||+||+.+++++++|||++...+++|+|+|++.++++.+++
T Consensus 400 rq~~GG~Gy~~~~~l~~l~~d~~~~~t~EG~n~vl~~~iar~ll~ 444 (610)
T cd01150 400 REACGGHGYLAMNRLPTLRDDNDPFCTYEGDNTVLLQQTANYLLK 444 (610)
T ss_pred HHHhcCccchhhcChHHHHhhccceeeeecchHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999876
No 39
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=2e-46 Score=380.42 Aligned_cols=293 Identities=21% Similarity=0.266 Sum_probs=258.0
Q ss_pred HHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEe--CCeEEEe-----eeeeeecC
Q 015286 116 YGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKMWCTN 188 (410)
Q Consensus 116 ~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~--~~g~~ln-----G~k~~~s~ 188 (410)
+..|.++++..|..+|+++|+++|+|++.+|+.++|+++|||++|||+.+++|+|+++ +++|+|| |+|+|++|
T Consensus 99 ~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~ 178 (664)
T PLN02443 99 TDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGG 178 (664)
T ss_pred eeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecC
Confidence 4456556677888999999999999999999999999999999999999999999998 6789998 99999999
Q ss_pred C-CcCCEEEEEEEeCCCCCCCCeEEEEEeCC-------CCCeeecccccccc---CCCCCceeEEeceeeeCCCCcccCC
Q 015286 189 G-PVAQTLVVYAKTDIKAGSKGITAFIIEKG-------MPGFSTAQKLDKLG---MRGSDTCELVFENCFVPNENVLGQE 257 (410)
Q Consensus 189 ~-~~ad~~~v~a~~~~~~~~~~~~~flV~~~-------~~gv~~~~~~~~~G---l~~~~s~~v~f~~v~VP~~~~lg~~ 257 (410)
+ ..||+++|+|++..+++..|+++|+||.+ .|||++.+.++++| +++.+++.|.|+||+||.+++|+..
T Consensus 179 ~~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~~ 258 (664)
T PLN02443 179 LGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRL 258 (664)
T ss_pred CcccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCCcc
Confidence 6 78999999999875555678999999975 79999999999999 5568899999999999999999753
Q ss_pred C------chH------HHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccc--cchhH-----HHHHHHHH
Q 015286 258 G------KGV------YVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLG--EFQFI-----QGKTADMY 318 (410)
Q Consensus 258 ~------~g~------~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~--~~~~v-----~~~la~~~ 318 (410)
+ ... ......+...|+.+++.++|+++++++.+++|+++|+|||.|++ ++|.+ |++|+++.
T Consensus 259 ~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg~~~~~~e~qii~y~~~Q~rL~~~l 338 (664)
T PLN02443 259 SKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIATRYSAVRRQFGSQDGGPETQVIDYKTQQSRLFPLL 338 (664)
T ss_pred cccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCCCCCCccchhhhhhHHHHHHHHHHH
Confidence 2 211 23445677889999999999999999999999999999999887 55555 99999999
Q ss_pred HHHHHHHHHHHHHHHHhhC-------CC-C----ChhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhc
Q 015286 319 TALQSSRSYVYSVARDCDN-------GK-V----DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAK 386 (410)
Q Consensus 319 ~~l~a~~~~~~~a~~~~d~-------~~-~----~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~ 386 (410)
+.+++++.+.+.+++.+++ +. . ....++++|+++++.+.++++.|+|+|||+||+.++++++++||++
T Consensus 339 a~~~a~r~~~~~a~~~~~~~~~~~~~~~~~~~~e~h~~aa~~Ka~~t~~a~~~i~~~rq~cGG~Gy~~~~~l~~l~~d~~ 418 (664)
T PLN02443 339 ASAYAFRFVGEWLKWLYTDVTQRLEANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELFAVYV 418 (664)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccCcHHHHHhhhh
Confidence 9999999999998887653 11 1 1223789999999999999999999999999999999999999999
Q ss_pred cCcccCChHHHHHHHHHHHhhc
Q 015286 387 LYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 387 ~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
...+++|+|++++.+++|.+++
T Consensus 419 ~~~t~EGdn~Vl~~~iar~ll~ 440 (664)
T PLN02443 419 PACTYEGDNVVLLLQVARFLMK 440 (664)
T ss_pred cceeecCcHHHHHHHHHHHHHH
Confidence 9999999999999999998875
No 40
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=100.00 E-value=2e-47 Score=329.18 Aligned_cols=335 Identities=25% Similarity=0.345 Sum_probs=299.6
Q ss_pred HHHcCCCCCCCCcCC--CCCCCCHHHHHHHHHHHHhccc-chhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceee
Q 015286 74 MGNFNLHGITAPQEY--GGLGLGYLYHCIAMEEISRASG-SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVG 150 (410)
Q Consensus 74 l~~~Gl~~~~~p~~~--GG~g~~~~~~~~v~e~la~~~~-s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~ 150 (410)
.+..|++++++|..- =|.|++..+++.++|.+++.-. +--+......+.-...|.+||++||+.+||-++.+|+...
T Consensus 36 aK~eGlWNLFlp~~~qkyg~GLtnveYa~icElmGrs~~APeVfNC~APDTGNMEvl~rYGseeQks~WL~PLLeG~irS 115 (392)
T KOG1469|consen 36 AKVEGLWNLFLPAVSQKYGAGLTNVEYAHICELMGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKSQWLIPLLEGNIRS 115 (392)
T ss_pred HHhcchHHhhhHHHHHhhccCccchhHHHHHHHhccccccchhccCCCCCCCCeeehhhhCCHHHHhhHhHHHhcCCcee
Confidence 345899999999653 5788999999999999998642 2222233333355568999999999999999999999999
Q ss_pred EEEecCCC-CCCCCCCceeEEEEeCCeEEEeeeeeeecCC--CcCCEEEEEEEeCCC--CCCCCeEEEEEeCCCCCeeec
Q 015286 151 ALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMWCTNG--PVAQTLVVYAKTDIK--AGSKGITAFIIEKGMPGFSTA 225 (410)
Q Consensus 151 ~~~~tep~-~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~--~~ad~~~v~a~~~~~--~~~~~~~~flV~~~~~gv~~~ 225 (410)
||++|||. +.||..+++++.+++++.|+|||+|||+||+ +.+.+.+++.+++.. +..+..++.+||.++|||++.
T Consensus 116 cFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~rhkQqSmiLVpM~TpGvkii 195 (392)
T KOG1469|consen 116 CFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASRHKQQSMILVPMNTPGVKII 195 (392)
T ss_pred eEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccchhhcccEEEEecCCCCeeEe
Confidence 99999999 5689999999999999999999999999997 677889999998865 234567899999999999999
Q ss_pred cccccccCCCCC--ceeEEeceeeeCCCCcccCCCchHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc
Q 015286 226 QKLDKLGMRGSD--TCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRP 303 (410)
Q Consensus 226 ~~~~~~Gl~~~~--s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~ 303 (410)
.+....|....+ ..+|+|+||+||..+++-.+++|+.+.+..+..+|+..|.-.+|.++++++...+.+..|..||++
T Consensus 196 RpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGRiHHcMRliG~aERal~lm~~R~~sRiaFgk~ 275 (392)
T KOG1469|consen 196 RPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGRIHHCMRLIGLAERALQLMKERALSRIAFGKK 275 (392)
T ss_pred eeeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcch
Confidence 999999887554 578999999999999998899999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--CCChhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHH
Q 015286 304 LGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG--KVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRL 381 (410)
Q Consensus 304 l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~--~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~ 381 (410)
+..+..+.+.+|+...++|.+|+++..++..+|.- .....+++|+|+.+...+.++.+.++|.+||.|+..+.++.++
T Consensus 276 l~q~~s~~~diA~sRveiEqaRLLvLkAAh~mD~~G~k~Ak~~iAMiKv~AP~ma~kilD~AiQ~~G~aG~s~~~~la~l 355 (392)
T KOG1469|consen 276 LVQHGSVAHDIAESRVEIEQARLLVLKAAHSMDTLGNKGAKKEIAMIKVAAPNMASKILDRAIQVQGGAGVSSDTPLANL 355 (392)
T ss_pred hhhcchHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcchhhhhheeeeeecCcHHHHHHHHHHHHHhcCCCCCCCceeeEE
Confidence 99999999999999999999999999999999874 3556789999999999999999999999999999999999999
Q ss_pred HhhhccCcccCChHHHHHHHHHHHhhc
Q 015286 382 LRDAKLYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 382 ~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
|--+++..+.+|+++++...|++--++
T Consensus 356 ~~~~r~lriadgPd~vhL~ai~~le~~ 382 (392)
T KOG1469|consen 356 YAIARVLRIADGPDEVHLSAIAKLELR 382 (392)
T ss_pred EEEeeeEEeccCCCccchhhhhhhhHH
Confidence 999999999999999999998875543
No 41
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.5e-35 Score=276.20 Aligned_cols=336 Identities=24% Similarity=0.313 Sum_probs=283.3
Q ss_pred HHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCcee
Q 015286 70 LWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHV 149 (410)
Q Consensus 70 ~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~ 149 (410)
.|..+.+.|.+....-+. |. -+..-...++|.++.+|.|++.-+..|..+..+.+..+|++.+++ |+.++-+-+.+
T Consensus 82 r~~~l~~~gv~~~~~~~~--~~-~~~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev~ 157 (661)
T KOG0135|consen 82 RIKRLVELGVFKFWLVED--GP-EAELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEVK 157 (661)
T ss_pred HHHHHHHhccCcceeecC--ch-HHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhcceee
Confidence 344455555554433222 00 123467788999999999999999999888899999999999988 99999999999
Q ss_pred eEEEecCCCCCCCCCCceeEEEEe--CCeEEEe-----eeeeeecC-CCcCCEEEEEEEeCCCCCCCCeEEEEEeCC---
Q 015286 150 GALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEKG--- 218 (410)
Q Consensus 150 ~~~~~tep~~Gs~~~~~~t~a~~~--~~g~~ln-----G~k~~~s~-~~~ad~~~v~a~~~~~~~~~~~~~flV~~~--- 218 (410)
+||++||.++||+..+++|+|+.| .+.|+|| ..|.|+.| +.+|++.+|+++........|+..|+||..
T Consensus 158 gcfamTEl~HGSNt~~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~FiiqIRdpk 237 (661)
T KOG0135|consen 158 GCFAMTELGHGSNTKGIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFIIQIRDPK 237 (661)
T ss_pred eeEEEeeecCCccccceeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeEEEEeeccc
Confidence 999999999999999999999999 6779998 78999999 689999999999976666789999999863
Q ss_pred ----CCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCC----------------chHHHHHhhhcHHHHHHHHH
Q 015286 219 ----MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG----------------KGVYVMMSGLDLERLVLAAG 278 (410)
Q Consensus 219 ----~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~----------------~g~~~~~~~~~~~rl~~aa~ 278 (410)
.|||+|.++-++.|+.|.+++.+.|+||+||.+++|...+ +-+-.....+..+|++++..
T Consensus 238 T~~t~PgV~igD~G~K~GlnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~~ 317 (661)
T KOG0135|consen 238 TLQTLPGVRIGDCGHKIGLNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIASS 317 (661)
T ss_pred ccCCCCCceecccccccccccccCceEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHHH
Confidence 4899999999999999999999999999999999984321 12223456677889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCC-------ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----------CCC
Q 015286 279 PLGIMQACLDVVLPYVRQREQFGR-------PLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG----------KVD 341 (410)
Q Consensus 279 ~~G~a~~al~~~~~~~~~R~~~g~-------~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~----------~~~ 341 (410)
++|.++-++.+|++|+..|+|||. +|.++|.-|++|--+.+...+.+-+.......+.+. .+.
T Consensus 318 ai~~lkla~tIAIRYS~sRRQFGP~~~geEv~iLeYp~qQ~RL~P~LAaaya~~fas~~l~~~y~E~~~~~~~~~n~kei 397 (661)
T KOG0135|consen 318 AIGALKLALTIAIRYSLSRRQFGPTKNGEEVPILEYPSQQYRLLPYLAAAYALSFASKYLVMIYVERTPRTNEGVNSKEI 397 (661)
T ss_pred HHHHHHHHHHHhhhhHHhHhhhCCCCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHH
Confidence 999999999999999999999983 588999999999888877777766665555444332 122
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhcc
Q 015286 342 PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 409 (410)
Q Consensus 342 ~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 409 (410)
....+..|.++++...++.++|.+.|||+||...+.+..+--|--.+..++|.|.|+.++.++.++++
T Consensus 398 HALsSg~K~~~TW~~~~~LqecREAcGGhGYl~~nRlg~Lr~D~D~~~TfEGDNnVLlQqvsn~LL~~ 465 (661)
T KOG0135|consen 398 HALSSGLKPVATWHNMRALQECREACGGHGYLQENRLGQLRDDHDPFQTFEGDNNVLLQQVSNALLAQ 465 (661)
T ss_pred HHHHhccchhhhHhhHHHHHHHHHHhccchHHHHHHhcccccCCCccceeecCceeHHHHHHHHHHHH
Confidence 33456789999999999999999999999999999999999999999999999999999999999874
No 42
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.96 E-value=7.4e-28 Score=236.48 Aligned_cols=239 Identities=18% Similarity=0.228 Sum_probs=198.8
Q ss_pred HhcCCH--HHHhhhchhhhcCceeeEEEecCCCCCCC--------CCCceeEEEEeCCeEEEeeeeeeecCCCcCCEEEE
Q 015286 128 VRHGSP--AQKDKYLPKLISGEHVGALAMSEPNAGSD--------VVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVV 197 (410)
Q Consensus 128 ~~~g~~--~~~~~~l~~l~~g~~~~~~~~tep~~Gs~--------~~~~~t~a~~~~~g~~lnG~k~~~s~~~~ad~~~v 197 (410)
..++++ +-..+|+..+.+.++..+.+++.|...-. ..-.--..++++|||+|||.|.|+|++ .||+++|
T Consensus 119 ~~~~~~y~~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V 197 (477)
T TIGR02309 119 GKSNSEFAENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILI 197 (477)
T ss_pred hhcCcHHHHHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEE
Confidence 444444 34567899999999999999999874322 111123456778999999999999996 9999999
Q ss_pred EEEeCCCCCC-C--CeEEEEEeCCCCCeeeccccccccCCCC-----------CceeEEeceeeeCCCCc--ccCC---C
Q 015286 198 YAKTDIKAGS-K--GITAFIIEKGMPGFSTAQKLDKLGMRGS-----------DTCELVFENCFVPNENV--LGQE---G 258 (410)
Q Consensus 198 ~a~~~~~~~~-~--~~~~flV~~~~~gv~~~~~~~~~Gl~~~-----------~s~~v~f~~v~VP~~~~--lg~~---~ 258 (410)
++++...++. . ....|+||.++|||++....+++|.++. ..+.|.||||+||+++| +|+. +
T Consensus 198 ~~~~~~~~~~~~~~ya~~F~VP~dtpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e~a~ 277 (477)
T TIGR02309 198 FPSTVLKAGAEKDPYALAFAIPTNTPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVELCN 277 (477)
T ss_pred eccCCCCCccCCCCeEEEEEeeCCCCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCCHHHHH
Confidence 9998654332 2 2689999999999999988888998876 66999999999999999 7876 5
Q ss_pred chHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 015286 259 KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG 338 (410)
Q Consensus 259 ~g~~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~ 338 (410)
.++.... .++..+..++|.+..++|.++.|++. .+++.++.++|+||++|++|.+.++++|++++.++...+.+
T Consensus 278 ~~f~~~~-----~~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~gi~~~q~VQ~kLAEm~~~~Ea~ral~~aAa~~~~~~ 351 (477)
T TIGR02309 278 NAYAATG-----AVNHMAHQVVALKIAKTEAFLGVAAL-MAEGIGADGFQHVQEKIAEIIVYLEAMKAFWTRAEEEAKEN 351 (477)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 5543322 23666889999999999999999998 99999999999999999999999999999999999998884
Q ss_pred C-----CChhhhhHHHHHHHHHHHHHHHHHHHhhccccccC
Q 015286 339 K-----VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVN 374 (410)
Q Consensus 339 ~-----~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~ 374 (410)
. +....++++|+++++...++. .++|++||.|+..
T Consensus 352 ~~G~~~P~~~~as~aKl~~~e~~~rv~-~alq~lGG~G~~~ 391 (477)
T TIGR02309 352 AYGLMTPDRGALDAARNLYPRLYPRLR-EILEQLGASGLIT 391 (477)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHHHH-HHHHHHhCCcEEe
Confidence 3 567889999999999999995 9999999999863
No 43
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]
Probab=99.95 E-value=1.1e-26 Score=224.08 Aligned_cols=301 Identities=21% Similarity=0.272 Sum_probs=244.9
Q ss_pred ccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCC--eEEEe-----e
Q 015286 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDG--GYIIN-----G 181 (410)
Q Consensus 109 ~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~--g~~ln-----G 181 (410)
...-+..+..|.++....|..-|++||.++|+++....+.++|+|-||.++|+++.+++|+|+.+.. .|+|| .
T Consensus 104 ~~~~~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta 183 (670)
T KOG0136|consen 104 LGQEGHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTA 183 (670)
T ss_pred cccCCchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcce
Confidence 3344445667877888999999999999999999999999999999999999999999999999864 59986 8
Q ss_pred eeeeecC-CCcCCEEEEEEEeCCCCCCCCeEEEEEeCC-------CCCeeeccccccccCCCCCceeEEeceeeeCCCCc
Q 015286 182 NKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEKG-------MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENV 253 (410)
Q Consensus 182 ~k~~~s~-~~~ad~~~v~a~~~~~~~~~~~~~flV~~~-------~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~ 253 (410)
.|||..+ +..++|.+|.|+.-.+....|+..|+||.. .|||++++...+||..+.+++-+.||||+||.++.
T Consensus 184 ~KWWPGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~nm 263 (670)
T KOG0136|consen 184 TKWWPGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRTNM 263 (670)
T ss_pred ecccCCccccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeechHhh
Confidence 9999988 788899999999987767789999999963 48999999999999999999999999999999998
Q ss_pred ccC----CCch-------HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC----C---ccccchhHHHHHH
Q 015286 254 LGQ----EGKG-------VYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG----R---PLGEFQFIQGKTA 315 (410)
Q Consensus 254 lg~----~~~g-------~~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g----~---~l~~~~~v~~~la 315 (410)
+-. ..+| ....+..+-+.|..+..-..-....|..+|++|+..|.|+. . .+.++|.-|.+|=
T Consensus 264 Lmr~~kV~~dGtyv~p~~~~l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~i~pg~~E~qIlDyqTQQ~rlF 343 (670)
T KOG0136|consen 264 LMRHAKVEPDGTYVKPPHPKLGYGTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSEIRPGQPEVQILDYQTQQYRLF 343 (670)
T ss_pred hhhhheecCCCccccCCccccceeeeEEEeehhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCceeeechhHHHHHh
Confidence 832 1111 12233334445655566666667788899999999999974 2 3889999999975
Q ss_pred HHHHHHHHHHHHH-------HHHHHHhhCCC-----CChhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHh
Q 015286 316 DMYTALQSSRSYV-------YSVARDCDNGK-----VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLR 383 (410)
Q Consensus 316 ~~~~~l~a~~~~~-------~~a~~~~d~~~-----~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~R 383 (410)
-..+.-.+-+..- ......+..+. +.....+..|..++..+.+-++.|.+.|||+||+.-+.+..+|-
T Consensus 344 P~LA~ayAf~~~g~~l~~~Y~~~~~~l~~g~~s~LpeLHaLS~gLKa~~T~~~~~GIE~~R~aCGGHGYs~~Sglp~iY~ 423 (670)
T KOG0136|consen 344 PQLARAYAFRFVGEELWELYEDVLKELENGNFSRLPELHALSAGLKAVVTWDTAQGIEQCRLACGGHGYSQASGLPEIYG 423 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhchHHHHHHhhhHHHhhhhhhhHHHHHHHhcCCccchhhcCCcccee
Confidence 5555444433332 33334444442 33344667899999999999999999999999999999999999
Q ss_pred hhccCcccCChHHHHHHHHHHHhhcc
Q 015286 384 DAKLYEIGAGTSEIRRMIIGRALLKQ 409 (410)
Q Consensus 384 d~~~~~~~~G~~~~~~~~i~~~~~~~ 409 (410)
.+-....+||.|.|+..++||.|.|.
T Consensus 424 ~~v~~CTYEGEN~VmlLQ~ARfLmKs 449 (670)
T KOG0136|consen 424 VAVGACTYEGENTVLLLQVARFLVKS 449 (670)
T ss_pred eeeeeeeeeccceeehHHHHHHHHHH
Confidence 99999999999999999999999874
No 44
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.92 E-value=1.5e-23 Score=176.83 Aligned_cols=150 Identities=40% Similarity=0.618 Sum_probs=146.2
Q ss_pred CchHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 015286 258 GKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN 337 (410)
Q Consensus 258 ~~g~~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~ 337 (410)
|+||.++...+...|+.+++.++|.++.+++.+.+|+++|++||+++.++|.++++++++..++++++++++.++..++.
T Consensus 1 g~G~~~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~ 80 (150)
T PF00441_consen 1 GQGWAVALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGKPLAEHPAVRRRLADMAARLEAMRALVYRAARRLDA 80 (150)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccchhhhHHHHHhhccchhhhhcccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhh
Q 015286 338 GKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALL 407 (410)
Q Consensus 338 ~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~ 407 (410)
+.....+.+++|+++++.+.++++.+++++|+.||.++++++++|||++.+.+++|++++++..|+|.+|
T Consensus 81 ~~~~~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~~~~~l~~~~rda~~~~i~~G~~ev~~~~ia~~~l 150 (150)
T PF00441_consen 81 GQNDPVEAAIAKYFATELAQDIAEEAMQLLGGRGLTEDNPLERLYRDARAFTIYGGTNEVQRNQIARRLL 150 (150)
T ss_dssp TSSTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHGGTSTSTHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhcccccccchhhhhhhhhhhhhcccCHHHHHHhhcceeeeccCCHHHHHHHHHHHhC
Confidence 9888899999999999999999999999999999999999999999999999999999999999999986
No 45
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=99.79 E-value=1.6e-19 Score=144.55 Aligned_cols=112 Identities=41% Similarity=0.776 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccchh
Q 015286 34 DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVG 113 (410)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~~s~~ 113 (410)
|+++++++.+++|+.+.+.|...++|+.+.+|. ++|+++.+.||+++.+|++|||.++++.+.+.+++++++.|.+++
T Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~~~ 79 (113)
T PF02771_consen 2 EEQQALREEAREFAEEEIAPHAAEWDEDGRFPR--EVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADASLA 79 (113)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCHH--HHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHchHHHHHHHHhCCCCH--HHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhccccc
Confidence 555699999999999999999999998889998 999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCc
Q 015286 114 LSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE 147 (410)
Q Consensus 114 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~ 147 (410)
+++.+|.++++.+|..+|+++|+++|+|++++|+
T Consensus 80 ~~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 80 FALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp HHHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred chhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 9888887577789999999999999999999986
No 46
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=99.69 E-value=3.7e-16 Score=128.96 Aligned_cols=123 Identities=24% Similarity=0.303 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh----CCCCC----h
Q 015286 273 LVLAAGPLGIMQACLDVVLPYVRQREQ--FGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCD----NGKVD----P 342 (410)
Q Consensus 273 l~~aa~~~G~a~~al~~~~~~~~~R~~--~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d----~~~~~----~ 342 (410)
+.+++.++|++++++++++++++.|.. .+.++.+.|.+|..|+++...+++++++++.++..++ .+.+. .
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~~~g~~~~~~~~ 80 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGAPLADDPYIQARLGEAAARLDAARALLYRAARRLWEAADAGEELTPEER 80 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSBCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHH
Confidence 467899999999999999999999887 5788999999999999999999999999999999854 44332 3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChH
Q 015286 343 KDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTS 395 (410)
Q Consensus 343 ~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~ 395 (410)
....+.|.++.+.+.++++.+++++|+.++...+|++|+|||+++...|...+
T Consensus 81 ~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~~~~pl~R~~RD~~~~~~H~~~~ 133 (134)
T PF08028_consen 81 ARLRAAKAHAARLAREAVDRLFRLAGGSALYRSSPLERIWRDVRAGAQHPALN 133 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSGGGGGBTTSHHHHHHHHHHHHTTSGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhChHhhhcCCcHHHHHHHHHHHhhCcccC
Confidence 44667899999999999999999999999999999999999999999998754
No 47
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.69 E-value=2.1e-15 Score=142.77 Aligned_cols=239 Identities=16% Similarity=0.208 Sum_probs=166.9
Q ss_pred cCCH--HHHhhhchhhhcCceeeEEEecCCCCCCC-----CC--CceeE-EEEeCCeEEEeeeeeeecCCCcCCEEEEE-
Q 015286 130 HGSP--AQKDKYLPKLISGEHVGALAMSEPNAGSD-----VV--GMKCK-ADRVDGGYIINGNKMWCTNGPVAQTLVVY- 198 (410)
Q Consensus 130 ~g~~--~~~~~~l~~l~~g~~~~~~~~tep~~Gs~-----~~--~~~t~-a~~~~~g~~lnG~k~~~s~~~~ad~~~v~- 198 (410)
++++ +--.+|+..+...+...+.++|.|....+ .. .+-.+ .++.++|.+|+|.|..+|+++.+|.++|+
T Consensus 125 ~~~dy~~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~P 204 (493)
T COG2368 125 FGTDYHENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLP 204 (493)
T ss_pred ccchHHHHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEee
Confidence 4444 34567899999999999999999874322 11 22333 35568899999999999999999999988
Q ss_pred EEeCCCCCCCCeEEEEEeCCCCCeeecccc---ccccCCCCC------------ceeEEeceeeeCCCCccc--CCC--c
Q 015286 199 AKTDIKAGSKGITAFIIEKGMPGFSTAQKL---DKLGMRGSD------------TCELVFENCFVPNENVLG--QEG--K 259 (410)
Q Consensus 199 a~~~~~~~~~~~~~flV~~~~~gv~~~~~~---~~~Gl~~~~------------s~~v~f~~v~VP~~~~lg--~~~--~ 259 (410)
.+.-..++......|.+|.++|||++.... ..-|+.+.+ .+-|.||||+|||++||- +.. .
T Consensus 205 t~~~~~~d~dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf~y~d~~~~~ 284 (493)
T COG2368 205 TRSMQEDDKDFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVFIYRDLERAY 284 (493)
T ss_pred ccccCCCCCceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhheeeeccHHHHH
Confidence 443333233455689999999999987543 122222222 244999999999999983 333 2
Q ss_pred hHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 015286 260 GVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK 339 (410)
Q Consensus 260 g~~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~ 339 (410)
.+.....+..+.+...+.+-.+...-.+-.+..-++. ....++++||.+|+||.+..+.+.++...++.......
T Consensus 285 ~~~~~~~Fa~~~~~q~~~~k~~k~d~i~G~~~~~~~~-----~Gv~~~~hIq~kl~Emi~~~e~~~al~~Aa~~~a~~~~ 359 (493)
T COG2368 285 AWYAVSGFARLHRQQAVGRKAVKLDFILGAAYLIAET-----NGVEEFRHIQEKLGEMIALLELMWALSDAAAEEAQKNP 359 (493)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHh-----hCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 3333333333444444444444444443333333321 24679999999999999999999999999987765543
Q ss_pred -----CChhhhhHHHHHHHHHHHHHHHHHHHhhcccccc
Q 015286 340 -----VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYV 373 (410)
Q Consensus 340 -----~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~ 373 (410)
|+...+...|.++...-.++...+.++.||.-.+
T Consensus 360 ~G~~~Pn~~~~n~~r~~~~~~~~~~~~~l~~i~gg~~i~ 398 (493)
T COG2368 360 NGAWLPNPAYANVGRVYAPKAYPRIKEILQDISGGGIIT 398 (493)
T ss_pred CCceecCHHHHhhHHHhcccchHHHHHHHHHHhcCceee
Confidence 6778889999999999999999999988775443
No 48
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.64 E-value=6.1e-14 Score=137.72 Aligned_cols=231 Identities=12% Similarity=0.067 Sum_probs=152.8
Q ss_pred HHHhhhchhhhcCceeeEEEecCCCCCCCC-----CCc-eeEEEEeCCeEEEeeeeeeecCCCcCCEEEE-EEEeCC-CC
Q 015286 134 AQKDKYLPKLISGEHVGALAMSEPNAGSDV-----VGM-KCKADRVDGGYIINGNKMWCTNGPVAQTLVV-YAKTDI-KA 205 (410)
Q Consensus 134 ~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~-----~~~-~t~a~~~~~g~~lnG~k~~~s~~~~ad~~~v-~a~~~~-~~ 205 (410)
+-..+|+..+.+.++..+.+++.|...-+. .+. --..++.++|.+|+|.|...|+++.+|.++| .....- .+
T Consensus 136 ~n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~~ 215 (519)
T TIGR02310 136 DNARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIGD 215 (519)
T ss_pred HHHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccCC
Confidence 345678899999999999999998743221 122 2345667889999999999999999999988 444311 12
Q ss_pred CCCCeEEEEEeCCCCCeeeccccccccCC----------------CCCceeEEeceeeeCCCCcccCCCch----HHHHH
Q 015286 206 GSKGITAFIIEKGMPGFSTAQKLDKLGMR----------------GSDTCELVFENCFVPNENVLGQEGKG----VYVMM 265 (410)
Q Consensus 206 ~~~~~~~flV~~~~~gv~~~~~~~~~Gl~----------------~~~s~~v~f~~v~VP~~~~lg~~~~g----~~~~~ 265 (410)
+......|.||.++|||++..... ..+. +-.-+-|.||||+||||+|+--.+.. +....
T Consensus 216 d~dyAvaFavP~dtpGlk~IcR~s-~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~~gd~e~~~~~~~~~ 294 (519)
T TIGR02310 216 NDDFALMFIAPMDAEGVKLICRHS-YELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLIYRDFERCRTWAQYG 294 (519)
T ss_pred CCCeEEEEEeEcCCCceEEEeCCc-hhhccccCCCCCcCccccccCCceEEEEeCCcccchHHceecCCHHHHHhHHHhh
Confidence 333456799999999999984431 1110 11226699999999999998332211 11111
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----CC
Q 015286 266 SGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG-----KV 340 (410)
Q Consensus 266 ~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~-----~~ 340 (410)
.+..++....+...++.++-.+-.+..-+. -..+..+++||.+|+|+....|+.++++..+....... .|
T Consensus 295 ~~~~~~~~q~~~r~~~k~dfl~G~a~~~ae-----~~G~~~~~hVqekl~Eli~~~E~~~a~~~Aa~~~~~~~~~G~~~P 369 (519)
T TIGR02310 295 GFARLFPMQACTRLAVKLDFITGLLHKALQ-----CTGVLEFRGVQAQMGEVVAWRNLFWTLTDAMAGSAYQWKNGAQLP 369 (519)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEee
Confidence 111111111111223332222222222222 12466899999999999999999999999888766543 26
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHhhccc
Q 015286 341 DPKDCAGVILCAAERATQVTLQAIQCLGGN 370 (410)
Q Consensus 341 ~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~ 370 (410)
+...+..+|.+..+...++.+.+.+++||.
T Consensus 370 ~~~~~~a~r~~~~~~y~r~~eil~~~~agG 399 (519)
T TIGR02310 370 SAQALQTYRVMAPMAYHTIKKIIEQTVTSG 399 (519)
T ss_pred CHHHHHHHHHHhhhhhHHHHHHHHHHccCC
Confidence 777889999999999999999888666543
No 49
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.57 E-value=4.6e-15 Score=100.23 Aligned_cols=52 Identities=42% Similarity=0.763 Sum_probs=47.2
Q ss_pred EEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCCCcCCEEEEEEEeC
Q 015286 151 ALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 202 (410)
Q Consensus 151 ~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~~~ad~~~v~a~~~ 202 (410)
|+++|||++|+|+..++++++++++||+|||+|.|+++++.||+++|+||++
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~d 52 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFARTD 52 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999973
No 50
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=99.13 E-value=3.2e-10 Score=102.33 Aligned_cols=120 Identities=21% Similarity=0.380 Sum_probs=78.5
Q ss_pred HHhhhchhhhcCceeeEEEecCCCCCCCCC------Ccee-EEEEeCCeEEEeeeeeeecCCCcCCEEEEEEEeCCCCC-
Q 015286 135 QKDKYLPKLISGEHVGALAMSEPNAGSDVV------GMKC-KADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAG- 206 (410)
Q Consensus 135 ~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~------~~~t-~a~~~~~g~~lnG~k~~~s~~~~ad~~~v~a~~~~~~~- 206 (410)
-..+|+..+.+.++..+.+++.|...-... .+-. ..++.++|.+|+|.|...|+++.+|.++|+....-.++
T Consensus 124 n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~~d 203 (264)
T PF11794_consen 124 NIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRPGD 203 (264)
T ss_dssp HHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTTCC
T ss_pred HHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCCCC
Confidence 346688889999999999999997321111 1223 34667889999999999999999999999876543323
Q ss_pred CCCeEEEEEeCCCCCeeeccccccccCCC------------CCceeEEeceeeeCCCCcc
Q 015286 207 SKGITAFIIEKGMPGFSTAQKLDKLGMRG------------SDTCELVFENCFVPNENVL 254 (410)
Q Consensus 207 ~~~~~~flV~~~~~gv~~~~~~~~~Gl~~------------~~s~~v~f~~v~VP~~~~l 254 (410)
......|.||.++||+++.........+. -.-+-|.||||+|||++||
T Consensus 204 ~dyAv~FavP~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 204 EDYAVAFAVPMNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp GGG-EEEEEETT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred CceEEEEEccCCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 33456899999999999986543322221 1126799999999999986
No 51
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=97.13 E-value=0.0076 Score=53.08 Aligned_cols=71 Identities=11% Similarity=0.150 Sum_probs=59.2
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----CCChhhhhHHHHHHHHHHHHHHHHHHHhhcccccc
Q 015286 303 PLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG-----KVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYV 373 (410)
Q Consensus 303 ~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~-----~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~ 373 (410)
.+.++++||++|+|+...+|+.++++..+....... .|+......+|.+..+...++++.+.+++||.-.+
T Consensus 43 G~~~~~hVqekl~Eli~~~E~~~a~~~Aae~~a~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~l~gg~li~ 118 (205)
T PF03241_consen 43 GIDKFPHVQEKLGELIAYLETLRALLIAAEAEAEPDPSGVYVPNPLPLNAARNYFPKNYPRIVEILQDLGGGGLIT 118 (205)
T ss_dssp TGTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE-TTSSEE--HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTC
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEeECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Confidence 467899999999999999999999999888766543 27778899999999999999999999988876664
No 52
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=90.38 E-value=0.23 Score=39.96 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=27.7
Q ss_pred HHhhhhHHHHHHHhcCCHHHHhhhchhhhcCce
Q 015286 116 YGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148 (410)
Q Consensus 116 ~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~ 148 (410)
+.+|.++....|...||+||+++|+|+..+.+.
T Consensus 92 ~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~I 124 (125)
T PF14749_consen 92 LGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEI 124 (125)
T ss_dssp HHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCcc
Confidence 447877899999999999999999999887664
No 53
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=88.76 E-value=6.9 Score=39.68 Aligned_cols=79 Identities=8% Similarity=-0.011 Sum_probs=64.2
Q ss_pred cCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-hhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchH
Q 015286 300 FGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVD-PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYAT 378 (410)
Q Consensus 300 ~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~-~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l 378 (410)
+|+.|.+.|.+..+|+++.+.+.++-+.+-++...+..+.+. ..+..+++.|+.+...++-..+-+++.. ++..+..+
T Consensus 429 ~~~~i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~~~~~~~~e~~la~~fc~~a~~rv~~~~~~~~~~-~~~~~~~~ 507 (520)
T PTZ00457 429 SGSQVPYQQLLLNRLGEAASLLYAASAVASRASMCVSKGLPSAKVEGELASAFIAMAVSRARQLSEESCNV-GKTADDSY 507 (520)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CccchHHH
Confidence 578899999999999999999999999998988888777543 4456799999999999988888788876 55553434
Q ss_pred H
Q 015286 379 G 379 (410)
Q Consensus 379 ~ 379 (410)
.
T Consensus 508 ~ 508 (520)
T PTZ00457 508 K 508 (520)
T ss_pred H
Confidence 3
No 54
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=75.08 E-value=65 Score=32.82 Aligned_cols=71 Identities=14% Similarity=0.097 Sum_probs=60.7
Q ss_pred hcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CChhhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 015286 299 QFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK-VDPKDCAGVILCAAERATQVTLQAIQCLGG 369 (410)
Q Consensus 299 ~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~-~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg 369 (410)
.+|+.+.+.|.+-++||+..+.+.++-+.+-+|.+.+..+. ....+...+..++++...++-..+-.+.++
T Consensus 532 k~~k~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~igl~~aDhEl~~at~~C~ea~~~~~~~l~~~~~~ 603 (634)
T KOG0137|consen 532 KHGKGIVEEQSVLQRLANVAINIYAMVAVISRASRSYSIGLPNADHELALATAICSEASLRVLRWLWAASSG 603 (634)
T ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 36789999999999999999999999999999999988874 556788889999999888777777665555
No 55
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=24.57 E-value=9.2e+02 Score=26.12 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=63.8
Q ss_pred cCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHH
Q 015286 300 FGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATG 379 (410)
Q Consensus 300 ~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~ 379 (410)
.|+.|...|.+..+|+|+.+.+.++-+.+.++. +++.+.. +...+.+++.+...++-..+-.+..... ...+.
T Consensus 559 ~g~~l~~~e~~~~Rl~d~~~~ly~~~a~l~r~~---~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~n~p---~~~~~ 631 (777)
T PRK09463 559 LGGSLKRRERLSARLGDILSQLYLASAVLKRYE---DEGRPEA-DLPLVHWAVQDALYQAEQALDGLLRNFP---NRVVA 631 (777)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHcCC---chHHH
Confidence 467889999999999999999999998887765 3443322 2456666666665555554444443322 22344
Q ss_pred HHHhhhccCc---ccCChHHHHHHHHHHHhhc
Q 015286 380 RLLRDAKLYE---IGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 380 r~~Rd~~~~~---~~~G~~~~~~~~i~~~~~~ 408 (410)
..+|-+ .+. .+.+++|-+...+++.+..
T Consensus 632 ~~~~~~-~~p~g~~~~~p~d~~~~~~~~~~~~ 662 (777)
T PRK09463 632 GLLRVL-VFPLGRRYRAPSDKLDHQVAKLLQT 662 (777)
T ss_pred HHHHHe-eeCCCCCCCCCCHHHHHHHHHHHhC
Confidence 444433 333 3456667777777777654
No 56
>PF05284 DUF736: Protein of unknown function (DUF736); InterPro: IPR007948 This family consists of several uncharacterised bacterial proteins of unknown function.
Probab=23.72 E-value=2e+02 Score=22.36 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=38.5
Q ss_pred CCcCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCC-CCCceeEEeceeee
Q 015286 189 GPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMR-GSDTCELVFENCFV 248 (410)
Q Consensus 189 ~~~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~-~~~s~~v~f~~v~V 248 (410)
.-.+++.+|.......+..+.+.+++-+.+ +++++.-|.+.+-. +.+.-.+.+||=..
T Consensus 22 ~~~~~i~lvP~~~~~~e~aPdyRV~~~~~~--~~EvGaaW~~~~~~tg~~Ylsl~LddP~f 80 (107)
T PF05284_consen 22 TLDAKIRLVPNESKDSENAPDYRVYAGPRG--GVEVGAAWKKTSKDTGRDYLSLKLDDPSF 80 (107)
T ss_pred EecccEEEEeCCCCCCCCCCCEEEEecCCC--CCceeeeehhhccccCCceEEEEEcCCCC
Confidence 345566555544322334455666555444 89999999999988 78888899988544
No 57
>PHA02095 hypothetical protein
Probab=20.94 E-value=63 Score=22.77 Aligned_cols=15 Identities=27% Similarity=0.634 Sum_probs=11.9
Q ss_pred eCCeEEEeeeeeeec
Q 015286 173 VDGGYIINGNKMWCT 187 (410)
Q Consensus 173 ~~~g~~lnG~k~~~s 187 (410)
...||++||.|-|.-
T Consensus 25 iq~~yv~ng~wefsr 39 (84)
T PHA02095 25 IQNGYVENGSWEFSR 39 (84)
T ss_pred eeeeEEecCcEEEEe
Confidence 356899999998753
Done!