Query 015286
Match_columns 410
No_of_seqs 207 out of 1350
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 09:56:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015286.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015286hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r7k_A Probable acyl COA dehyd 100.0 9E-73 3.1E-77 552.2 40.8 378 26-406 23-401 (403)
2 3p4t_A Putative acyl-COA dehyd 100.0 1.3E-72 4.5E-77 551.0 41.4 388 16-406 10-399 (403)
3 1ukw_A Acyl-COA dehydrogenase; 100.0 2.3E-72 7.8E-77 545.4 41.1 375 31-408 4-378 (379)
4 2d29_A Acyl-COA dehydrogenase; 100.0 4E-72 1.4E-76 545.1 42.8 378 30-409 5-386 (387)
5 3pfd_A Acyl-COA dehydrogenase; 100.0 4.6E-73 1.6E-77 552.6 35.9 377 29-408 16-393 (393)
6 3nf4_A Acyl-COA dehydrogenase; 100.0 4E-72 1.4E-76 545.3 41.2 377 27-408 11-387 (387)
7 2vig_A Short-chain specific ac 100.0 7.8E-72 2.7E-76 543.6 41.4 377 30-408 4-380 (391)
8 1buc_A Butyryl-COA dehydrogena 100.0 7.4E-72 2.5E-76 542.7 40.6 376 31-408 4-383 (383)
9 2jif_A Short/branched chain sp 100.0 9.8E-72 3.3E-76 544.5 41.3 377 30-409 27-403 (404)
10 2dvl_A Acyl-COA dehydrogenase; 100.0 2.1E-71 7.3E-76 537.2 40.8 370 32-408 3-372 (372)
11 2pg0_A Acyl-COA dehydrogenase; 100.0 4.1E-71 1.4E-75 537.6 42.3 373 30-406 8-383 (385)
12 1egd_A Medium chain acyl-COA d 100.0 2.1E-71 7.2E-76 541.5 40.3 377 30-409 14-393 (396)
13 1ivh_A Isovaleryl-COA dehydrog 100.0 3.6E-71 1.2E-75 539.5 40.5 378 32-409 13-392 (394)
14 1rx0_A Acyl-COA dehydrogenase 100.0 5.5E-71 1.9E-75 537.8 41.6 376 30-409 17-393 (393)
15 3ii9_A Glutaryl-COA dehydrogen 100.0 3.6E-72 1.2E-76 546.9 33.1 378 28-409 15-392 (396)
16 3sf6_A Glutaryl-COA dehydrogen 100.0 4.8E-71 1.6E-75 540.0 38.4 373 28-409 26-399 (403)
17 3swo_A Glutaryl-COA dehydrogen 100.0 6.4E-71 2.2E-75 538.6 38.4 372 29-409 23-394 (399)
18 2eba_A Putative glutaryl-COA d 100.0 3.6E-70 1.2E-74 531.0 40.3 372 30-408 9-381 (385)
19 2ix5_A Acyl-coenzyme A oxidase 100.0 5E-70 1.7E-74 536.4 40.2 373 30-409 53-425 (436)
20 3mpi_A Glutaryl-COA dehydrogen 100.0 1.7E-70 5.8E-75 535.6 35.0 373 30-406 3-382 (397)
21 1r2j_A Protein FKBI; polyketid 100.0 4E-70 1.4E-74 527.0 33.8 360 41-408 2-363 (366)
22 4hr3_A Putative acyl-COA dehyd 100.0 8E-70 2.7E-74 533.7 36.0 378 30-409 7-411 (415)
23 3owa_A Acyl-COA dehydrogenase; 100.0 3.6E-69 1.2E-73 546.8 37.6 375 28-409 29-425 (597)
24 1siq_A GCD, glutaryl-COA dehyd 100.0 5.7E-68 2E-72 516.7 38.9 371 30-408 12-384 (392)
25 2z1q_A Acyl-COA dehydrogenase; 100.0 1.8E-67 6.2E-72 534.8 35.1 370 33-409 29-415 (577)
26 3mkh_A Nitroalkane oxidase; ox 100.0 4.7E-67 1.6E-71 517.6 33.1 379 29-409 4-417 (438)
27 2c12_A Nitroalkane oxidase; ox 100.0 4.8E-66 1.6E-70 510.3 36.9 378 30-408 4-419 (439)
28 2uxw_A VERY-long-chain specifi 100.0 1E-65 3.4E-70 523.1 38.7 365 38-406 56-428 (607)
29 2wbi_A Acyl-COA dehydrogenase 100.0 7.3E-66 2.5E-70 507.0 32.2 378 29-409 20-419 (428)
30 3mxl_A Nitrososynthase; flavin 100.0 5.9E-64 2E-68 489.4 28.9 366 30-408 7-393 (395)
31 2or0_A Hydroxylase; APC7385, r 100.0 3.3E-63 1.1E-67 486.6 27.6 362 29-409 15-402 (414)
32 3m9v_A FAD-dependent oxidoredu 100.0 4.3E-62 1.5E-66 482.2 33.6 369 28-409 16-405 (439)
33 2rfq_A 3-HSA hydroxylase, oxyg 100.0 8.1E-62 2.8E-66 474.0 31.4 353 38-409 11-387 (394)
34 2jbr_A P-hydroxyphenylacetate 100.0 3.3E-62 1.1E-66 480.5 28.4 353 38-409 39-415 (422)
35 1w07_A Acyl-COA oxidase; oxido 100.0 3.5E-55 1.2E-59 450.0 28.5 364 33-408 28-440 (659)
36 3djl_A Protein AIDB; alpha hel 100.0 1.2E-54 4.2E-59 435.1 31.1 328 67-409 88-442 (541)
37 2ddh_A Acyl-COA oxidase; beta 100.0 4.1E-51 1.4E-55 419.1 31.3 360 34-408 27-437 (661)
38 1u8v_A Gamma-aminobutyrate met 100.0 5.8E-40 2E-44 325.1 28.1 276 125-408 118-445 (490)
39 2yyk_A 4-hydroxyphenylacetate- 100.0 9.2E-40 3.1E-44 323.2 26.4 265 132-406 122-422 (481)
40 3hwc_A Chlorophenol-4-monooxyg 100.0 2.3E-34 8E-39 284.1 28.1 237 130-374 127-391 (515)
41 4g5e_A 2,4,6-trichlorophenol 4 100.0 1.3E-29 4.4E-34 250.7 24.9 244 134-384 134-400 (517)
42 3owa_A Acyl-COA dehydrogenase; 94.3 0.38 1.3E-05 48.4 12.4 108 300-409 482-592 (597)
43 2uxw_A VERY-long-chain specifi 75.6 36 0.0012 34.0 13.2 69 300-368 506-575 (607)
44 2z1q_A Acyl-COA dehydrogenase; 73.1 76 0.0026 31.4 15.0 101 301-409 469-570 (577)
No 1
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}
Probab=100.00 E-value=9e-73 Score=552.16 Aligned_cols=378 Identities=29% Similarity=0.458 Sum_probs=358.9
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHH
Q 015286 26 SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI 105 (410)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~l 105 (410)
.+++..+++|+.++++.+++|+.+++.|.+.+.|+.+.+|. ++|++|.+.||+++.+|++|||.|+++.+...++|++
T Consensus 23 ~~~~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel 100 (403)
T 3r7k_A 23 VAPEAWTTPERRALSQMARSFVEREIAPKLAEWEHVGEIPR--DLHLNAAEVGLLGIGFPEEVGGSGGNAIDSALVTEAI 100 (403)
T ss_dssp --CGGGGCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCT--HHHHHHHHHTCTTBTSCGGGTCCBCCHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCH--HHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHH
Confidence 34455567788899999999999999999889999999999 9999999999999999999999999999999999999
Q ss_pred Hhc-ccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeee
Q 015286 106 SRA-SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKM 184 (410)
Q Consensus 106 a~~-~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~ 184 (410)
++. |+++++.+..+..++...|..+|+++|+++|+|++++|+.++++++|||++|||+..++|+|++++|||+|||+|.
T Consensus 101 a~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~ 180 (403)
T 3r7k_A 101 LAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKT 180 (403)
T ss_dssp HHTTCCHHHHHHHCTHHHHSHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEE
T ss_pred HhcCCchHHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhceEEEEEECCEEEEEEEEE
Confidence 998 8999887775544777889999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHH
Q 015286 185 WCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVM 264 (410)
Q Consensus 185 ~~s~~~~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~ 264 (410)
|+||+.+||+++|.++++++ +..++++|+||++.|||++.++|+++|++++++++|.||||+||++++||..+.|+...
T Consensus 181 ~vs~a~~Ad~~~v~a~~~~~-~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~ 259 (403)
T 3r7k_A 181 FITSGVRADFVTTAVRTGGP-GYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQI 259 (403)
T ss_dssp EEETTTTCSEEEEEEECSSS-SGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHH
T ss_pred cccCCccCCEEEEEEEcCCC-CCCceEEEEEeCCCCCeEecCcccccCCCCCCceEEEEeeEEECHHHcCCCCCchHHHH
Confidence 99999999999999999765 55689999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhh
Q 015286 265 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKD 344 (410)
Q Consensus 265 ~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~ 344 (410)
...+...|+.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.++++++|++++.+++.++.+.+...+
T Consensus 260 ~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~ 339 (403)
T 3r7k_A 260 MQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQIIRHKLAEMARQVDVACTYTRAVMQRWLAGEDVVAE 339 (403)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998878888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHh
Q 015286 345 CAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRAL 406 (410)
Q Consensus 345 ~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~ 406 (410)
++++|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|++++++..|++.+
T Consensus 340 ~~~aK~~a~~~a~~v~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l 401 (403)
T 3r7k_A 340 VSMAKNTAVYACDYVVNEAVQIFGGMGYMRESEIERHYRDCRILGIGGGTNEIMNEVIAKRI 401 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHTTTTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEecCCchHHHHHHHhCcceeecCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999976
No 2
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*
Probab=100.00 E-value=1.3e-72 Score=550.98 Aligned_cols=388 Identities=29% Similarity=0.463 Sum_probs=359.7
Q ss_pred ccccccCCCcCCCCCCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCH
Q 015286 16 TKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGY 95 (410)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~ 95 (410)
|+...++++.++++..+++|+.++++.+++|+.+.+.|.+.+.|+.+.+|. ++|++|.+.||+++.+|++|||.|+++
T Consensus 10 ~~~~~~~~~~~~M~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~l~~P~e~GG~g~~~ 87 (403)
T 3p4t_A 10 GTLEAQTQGPGSMSIWTTAEREALRKTVRAFAEREVLPHAHEWERAGEIPR--ELHRKAAELGLLGAGFPEDAGGSGGDG 87 (403)
T ss_dssp -------------CTTSSHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCH--HHHHHHHHTTCTTBTSCGGGTCCBCCT
T ss_pred cchhhhccCCCCCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCH--HHHHHHHHCCCCcCCCChhhCCCCCCH
Confidence 344556666666777778888899999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccch-hHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeC
Q 015286 96 LYHCIAMEEISRASGSV-GLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVD 174 (410)
Q Consensus 96 ~~~~~v~e~la~~~~s~-~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~ 174 (410)
.+...++|++++.|+++ ++.+..|..++...|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|++++
T Consensus 88 ~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~ 167 (403)
T 3p4t_A 88 ADPVVICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDG 167 (403)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHSTHHHHSHHHHHHTCHHHHHHTHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEET
T ss_pred HHHHHHHHHHHHhCCchhhhHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceEEEEEeC
Confidence 99999999999999999 88777776567778999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeeeeeeecCCCcCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcc
Q 015286 175 GGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL 254 (410)
Q Consensus 175 ~g~~lnG~k~~~s~~~~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~l 254 (410)
|||+|||+|.|+||+..||+++|.++++++ +.+++++|+||++.|||++.++|+++|++++++++|.||||+||++++|
T Consensus 168 ~g~~lnG~K~~vs~a~~Ad~~~v~a~~~~~-~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~l 246 (403)
T 3p4t_A 168 DHYVINGAKTYITSGVRADYVVTAARTGGP-GAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLV 246 (403)
T ss_dssp TEEEEEEEEEEEETTTTCSEEEEEEECSSS-SGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEE
T ss_pred CEEEEEEEEEEecCCcccCEEEEEEEeCCC-CCCceEEEEEeCCCCCeEecCCCCcccCCCCCeeEEEEcceEecHHHcC
Confidence 999999999999999999999999998764 5568999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015286 255 GQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARD 334 (410)
Q Consensus 255 g~~~~g~~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~ 334 (410)
|.++.|+......+...|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++.+++.
T Consensus 247 g~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~pi~~~q~vq~~la~~~~~~~aar~~~~~aa~~ 326 (403)
T 3p4t_A 247 GSENTGFAQIAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAGMARRIDVARVYTRHVVER 326 (403)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCC-hhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHh
Q 015286 335 CDNGKVD-PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRAL 406 (410)
Q Consensus 335 ~d~~~~~-~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~ 406 (410)
++.+.+. ...++++|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|++++++..|++.+
T Consensus 327 ~d~~~~~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l 399 (403)
T 3p4t_A 327 QLAGETNLIAEVCFAKNTAVEAGEWVANQAVQLFGGMGYMAESEVERQYRDMRILGIGGGTTEILTSLAAKTL 399 (403)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHTTTTTTTSCHHHHHHHHHHHH
T ss_pred HHCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhChhhccCCCcHHHHHHHhhcceeccCHHHHHHHHHHHHc
Confidence 9988766 78899999999999999999999999999999999999999999999999999999999999987
No 3
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=2.3e-72 Score=545.36 Aligned_cols=375 Identities=37% Similarity=0.575 Sum_probs=356.9
Q ss_pred CCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccc
Q 015286 31 LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG 110 (410)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~~ 110 (410)
.+++|+..+++.+++|+++.+.|.+.+.|+.+.+|. ++|++|.+.||+++.+|++|||.|+++.+...++|++++.|+
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~eel~~~~~ 81 (379)
T 1ukw_A 4 SLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPW--PVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYACM 81 (379)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTGGGHHHHHHHTCCCH--HHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCH--HHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHHhCc
Confidence 346777799999999999999998888999999999 999999999999999999999999999999999999999999
Q ss_pred chhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCCC
Q 015286 111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGP 190 (410)
Q Consensus 111 s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~~ 190 (410)
++++.+..|. ++...|..+|+++||++|+|++.+|+.++++++|||++|||+..++|+|++++|||+|||+|.|+||+.
T Consensus 82 ~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~ 160 (379)
T 1ukw_A 82 GIYTIPMASD-LGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGG 160 (379)
T ss_dssp HHHHHHHHHH-HHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTT
T ss_pred hHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcChhhCeEEEEEeCCEEEEEEEEecccCCC
Confidence 9998888875 778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhhcH
Q 015286 191 VAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDL 270 (410)
Q Consensus 191 ~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~~ 270 (410)
+||+++|+++++++++.+++++|+||++.|||++.+.|+++|++++++++|.||||+||+++++|..+.|+......+..
T Consensus 161 ~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~ 240 (379)
T 1ukw_A 161 EAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLNK 240 (379)
T ss_dssp TEEEEEEEEESCGGGGGGGEEEEEEETTCTTEEEEECCCCSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHHHHHH
T ss_pred cCCEEEEEEEcCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEEeeEEecHHhcCCCCCchHHHHHHHHHH
Confidence 99999999998654345678999999999999999999999999999999999999999999999999999888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhHHHH
Q 015286 271 ERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVIL 350 (410)
Q Consensus 271 ~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~~ak~ 350 (410)
.|+.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.++++++|++++.+++.++.+.+....++++|+
T Consensus 241 ~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~g~~~~~~~~~aK~ 320 (379)
T 1ukw_A 241 TRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFKLVDMLIGIETARMYTYYAAWLADQGLPHAHASAIAKA 320 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887767788999999
Q ss_pred HHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhc
Q 015286 351 CAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 351 ~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
++++.+.++++.++|+|||.||+++++++|+|||++...+++|++++++..|++.+++
T Consensus 321 ~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 378 (379)
T 1ukw_A 321 YASEIAFEAANQAIQIHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLIIARHILA 378 (379)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhCCeecCCCChHHHHHHHhcCceecCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999886
No 4
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*
Probab=100.00 E-value=4e-72 Score=545.13 Aligned_cols=378 Identities=38% Similarity=0.614 Sum_probs=358.3
Q ss_pred CCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 015286 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (410)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~ 109 (410)
..+++|+..+++.+++|+.+.+.|.+.+.|+.+.+|+ ++|++|.+.||+++.+|++|||.|+++.+...++|+++++|
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~ 82 (387)
T 2d29_A 5 FEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPW--DLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYD 82 (387)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHCCCCH--HHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHhcchhHHHHhhcCCCCH--HHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhhC
Confidence 4456777799999999999999998888999999999 99999999999999999999999999999999999999999
Q ss_pred cchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCC
Q 015286 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 189 (410)
Q Consensus 110 ~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~ 189 (410)
+++++.+..|..++...|..+|+++|+++|+|++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.|+||+
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~ 162 (387)
T 2d29_A 83 GALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQG 162 (387)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEeCCCCCCCCHhhCceEEEEeCCEEEEEeEEeccCCC
Confidence 99998887774367778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCEEEEEEEeCCCC----CCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHH
Q 015286 190 PVAQTLVVYAKTDIKA----GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMM 265 (410)
Q Consensus 190 ~~ad~~~v~a~~~~~~----~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~ 265 (410)
.+||+++|+++++++. +.+++++|+||++.|||++.++|+++|++++++++|.||||+||+++++|.++.|+....
T Consensus 163 ~~Ad~~~v~a~~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~ 242 (387)
T 2d29_A 163 SVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVL 242 (387)
T ss_dssp TTCSEEEEEEECSCCSCGGGTTTTEEEEEEECCSSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHHH
T ss_pred CcCCEEEEEEEeCCccccCCCCCCeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEEeeEEECHHHcCCCCCccHHHHH
Confidence 9999999999987542 455799999999999999999999999999999999999999999999999999998888
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhh
Q 015286 266 SGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDC 345 (410)
Q Consensus 266 ~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~ 345 (410)
..+...|+.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.++++++|++++.+++.++.+.+....+
T Consensus 243 ~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~ 322 (387)
T 2d29_A 243 RVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLKAAELKDAGRPFTLEA 322 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCcchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999877677789
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhcc
Q 015286 346 AGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 409 (410)
Q Consensus 346 ~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 409 (410)
+++|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|++++++..|++.+++.
T Consensus 323 ~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~G~~~i~~~~ia~~~l~~ 386 (387)
T 2d29_A 323 AQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLLEA 386 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeecCCCChHHHHHHHhhCccccCCHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999864
No 5
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=4.6e-73 Score=552.63 Aligned_cols=377 Identities=35% Similarity=0.589 Sum_probs=353.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhc
Q 015286 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (410)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~ 108 (410)
+..+++|++++++.+++|+++.+.|.+.+.|+.+.+|. ++|++|.+.||+++.+|++|||.|+++.+...++|++++.
T Consensus 16 ~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eela~~ 93 (393)
T 3pfd_A 16 LFQLPEEHIALREAIRALAEKEIAPYAAEVDEKARFPE--EALAALNSSGFSAIHVPEEYGGQGADSVATCIVIEEVARV 93 (393)
T ss_dssp ------CHHHHHHHHHHHHHHHTGGGHHHHHHTTCCCH--HHHHHHHHHTCSCTTSCGGGTCCCCCHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCchHHHHHhhhCCCCH--HHHHHHHHCCCCCCCCChhHCCCCCCHHHHHHHHHHHHhh
Confidence 34556777799999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecC
Q 015286 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN 188 (410)
Q Consensus 109 ~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~ 188 (410)
|+++++++..|. ++...|..+|+++||++|+|++.+|+.++++++|||++|||+..++|+|++++|||+|||+|.|+||
T Consensus 94 ~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~ 172 (393)
T 3pfd_A 94 DCSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITN 172 (393)
T ss_dssp CHHHHHHHHHHH-HTTHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred CchHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCcccCeeEEEEcCCEEEEeeEEEEecC
Confidence 999999777775 6677788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhh
Q 015286 189 GPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGL 268 (410)
Q Consensus 189 ~~~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~ 268 (410)
+.+||+++|+++++++++..++++|+||++.|||++.++|+++|++++++++|.||||+||++++||.++.|+......+
T Consensus 173 ~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~g~g~~~~~~~l 252 (393)
T 3pfd_A 173 GGKSTWYTVMAVTDPDKGANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATL 252 (393)
T ss_dssp TTTCSEEEEEEESCGGGGGGGEEEEEEETTSTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHH
T ss_pred CcccCEEEEEEEeCCCCCCCceEEEEEECCCCCeEecCCCCcccCCCCCceEEEEccEEEcHHHcCCCCCchHHHHHHHH
Confidence 99999999999997654556899999999999999999999999999999999999999999999999999999998999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-ChhhhhH
Q 015286 269 DLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV-DPKDCAG 347 (410)
Q Consensus 269 ~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~-~~~~~~~ 347 (410)
...|+.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.++++++|++++.+++.++.+.+ ....+++
T Consensus 253 ~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~~~~~~~~~~~ 332 (393)
T 3pfd_A 253 DHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEAARLMVYSAAARAERGEGDLGFISAA 332 (393)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988765 6678899
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhc
Q 015286 348 VILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 348 ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
+|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|++++++..|+|.+++
T Consensus 333 aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~ll~ 393 (393)
T 3pfd_A 333 SKCFASDVAMEVTTDAVQLFGGYGYTQDFPVERMMRDAKITQIYEGTNQIQRVVMSRALLR 393 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHTGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhchhhccCCChHHHHHHhhcceeeecCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999875
No 6
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=4e-72 Score=545.30 Aligned_cols=377 Identities=32% Similarity=0.577 Sum_probs=352.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHH
Q 015286 27 STSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEIS 106 (410)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la 106 (410)
.++..+++++.++++.+++|+.+.+.|.+.+.|+.+.+|. ++|++|.+.||+++.+|++|||.|+++.+...++|+++
T Consensus 11 ~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eel~ 88 (387)
T 3nf4_A 11 VDRLLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPE--GVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIA 88 (387)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCT--THHHHHHTTTTTSTTSCGGGTCCCCCHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCH--HHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHH
Confidence 3345567888899999999999999999989999999999 99999999999999999999999999999999999999
Q ss_pred hcccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeee
Q 015286 107 RASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWC 186 (410)
Q Consensus 107 ~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~ 186 (410)
++|+++++.+..|. ++...+..+|+++|+++|+|++++|+.++++++|||++|||+..++|+|++++|||+|||+|.|+
T Consensus 89 ~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~ 167 (387)
T 3nf4_A 89 ARWASVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWI 167 (387)
T ss_dssp TTCHHHHHHHHHHH-HHTHHHHHHSCHHHHHHHHHHHTTSSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEE
T ss_pred HhCchHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEEcCCCCCCChhhCEEEEEEeCCEEEEEeEEecc
Confidence 99999999888887 77788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHh
Q 015286 187 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMS 266 (410)
Q Consensus 187 s~~~~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~ 266 (410)
||+.+||+++|+++++ ++.+++++|+||++.|||++.+.|+++|++++++++|.|+||+||+++++|..+.|+.....
T Consensus 168 s~~~~Ad~~~v~a~~~--~~~~g~~~flV~~~~pGv~~~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~ 245 (387)
T 3nf4_A 168 THGGKADFYTLFARTG--EGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFS 245 (387)
T ss_dssp ETTTTCSEEEEEEECC----CCCEEEEEEETTCTTEEECCCCCBSSCCSSCEEEEEEEEEEEEGGGEESSTTCHHHHHHH
T ss_pred cCCcccCEEEEEEEeC--CCCCceEEEEEECCCCCeEecCcccccccCCCCeeEEEEeeEEecHHHcCCCCCchHHHHHH
Confidence 9999999999999986 34568999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhh
Q 015286 267 GLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCA 346 (410)
Q Consensus 267 ~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~ 346 (410)
.+...|+.+++.++|+++++++.+++|+++|++||+|+.++|.+|++|++|.+.++++|++++.+++.++.+.+...+++
T Consensus 246 ~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~~~~~~~~~~~~ 325 (387)
T 3nf4_A 246 ALDSGRLGIAAVATGLAQAALDEAVAYANERTAFGRKIIDHQGLGFLLADMAAAVATARATYLDAARRRDQGRPYSQQAS 325 (387)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CTTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887888899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhc
Q 015286 347 GVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 347 ~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
++|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|++++++..|++.+++
T Consensus 326 ~aK~~a~~~a~~~~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l~~ 387 (387)
T 3nf4_A 326 IAKLTATDAAMKVTTDAVQVFGGVGYTRDYRVERYMREAKIMQIFEGTNQIQRLVIARGLTR 387 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcHhhcCCCcHHHHHhHhhcCeeecChHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999998864
No 7
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*
Probab=100.00 E-value=7.8e-72 Score=543.62 Aligned_cols=377 Identities=39% Similarity=0.619 Sum_probs=356.7
Q ss_pred CCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 015286 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (410)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~ 109 (410)
..+++|+..+++.+++|+.+.+.|.+.+.|+.+.+|. ++|++|.+.||+++.+|++|||.|+++.+...++|+++++|
T Consensus 4 ~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~ 81 (391)
T 2vig_A 4 VELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPA--AQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGC 81 (391)
T ss_dssp --CCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCH--HHHHHHHHHTTTSTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHhCcccHHHHHhcCCCCH--HHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHhhc
Confidence 3356777799999999999999998888999999999 99999999999999999999999999999999999999999
Q ss_pred cchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCC
Q 015286 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 189 (410)
Q Consensus 110 ~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~ 189 (410)
+++++.+..|..++...|..+|+++|+++|+|++.+|+.++++++|||++|||+..++|+|++++|||+|||+|.|+||+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~ 161 (391)
T 2vig_A 82 ASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNA 161 (391)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCCcccceeEEEEeCCEEEEeeEEEeecCC
Confidence 99998888774366778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhhc
Q 015286 190 PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269 (410)
Q Consensus 190 ~~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~ 269 (410)
.+||+++|+++++++++.+++++|+||++.|||++.+.|+++|++++++++|.||||+||+++++|.++.|+......+.
T Consensus 162 ~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~ 241 (391)
T 2vig_A 162 WEASAAVVFASTDRALQNKSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLD 241 (391)
T ss_dssp TTCSEEEEEEECCSSSTTSCEEEEEEESSCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHHHHHHH
T ss_pred CcCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEECcEEECHHHcCCCCCchHHHHHHHHH
Confidence 99999999999875445568999999999999999999999999999999999999999999999999999988888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhHHH
Q 015286 270 LERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVI 349 (410)
Q Consensus 270 ~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~~ak 349 (410)
..|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++.+++.++.+.+...+++++|
T Consensus 242 ~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~~~aK 321 (391)
T 2vig_A 242 MGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLLTWRAAMLKDNKKPFIKEAAMAK 321 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998776677899999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhc
Q 015286 350 LCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
+++++.+.++++.++|+|||.||+++++++|+|||++...+++|++++++..|++.+++
T Consensus 322 ~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~G~~~~~~~~ia~~~l~ 380 (391)
T 2vig_A 322 LAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLR 380 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCeEecCCChHHHHHHHhhcceeecCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999875
No 8
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=7.4e-72 Score=542.67 Aligned_cols=376 Identities=39% Similarity=0.621 Sum_probs=357.4
Q ss_pred CCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCC---CCHHHHHHHHHHHHh
Q 015286 31 LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLG---LGYLYHCIAMEEISR 107 (410)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g---~~~~~~~~v~e~la~ 107 (410)
.+++|+.++++.+++|+++.+.|.+.+.|+.+.+|. ++|++|.+.||+++.+|++|||.| +++.+...++|++++
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~v~eel~~ 81 (383)
T 1buc_A 4 NLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDK--ELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELAK 81 (383)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTTTTHHHHHHHTCCCH--HHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCH--HHHHHHHHCCCCCCCCChhhCCCCCCCCCHHHHHHHHHHHHh
Confidence 346777799999999999999999889999999999 999999999999999999999999 999999999999999
Q ss_pred cccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEe-CCeEEEeeeeeee
Q 015286 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWC 186 (410)
Q Consensus 108 ~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~-~~g~~lnG~k~~~ 186 (410)
+|+++++++..|..++...|..+|+++|+++|+|++.+|+.++|+++|||++|||+..++|+|+++ +|||+|||+|.|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~~g~~lnG~K~~~ 161 (383)
T 1buc_A 82 YDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFI 161 (383)
T ss_dssp HCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEEE
T ss_pred hChHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEeCCCCCCCChhhCEeEEEEcCCCEEEEEEEEecc
Confidence 999999888877546778899999999999999999999999999999999999999999999999 9999999999999
Q ss_pred cCCCcCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHh
Q 015286 187 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMS 266 (410)
Q Consensus 187 s~~~~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~ 266 (410)
||+.+||+++|+++++++.+.+++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++||.++.|+.....
T Consensus 162 s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~ 241 (383)
T 1buc_A 162 TNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMM 241 (383)
T ss_dssp ETTTTCSEEEEEEESCSSSSTTSEEEEEEETTCTTEEEEEECCCSSCTTSCEEEEEEEEEEECGGGEESCTTBHHHHHHH
T ss_pred CCCCcCCEEEEEEEeCCCCCCCceEEEEEECCCCCeEecCccccccccCCceeEEEEccEEeCHHHcCCCCCchHHHHHH
Confidence 99999999999999875545568999999999999999999999999999999999999999999999999999988888
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhh
Q 015286 267 GLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCA 346 (410)
Q Consensus 267 ~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~ 346 (410)
.+...|+.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.++++++|++++.+++.++.+.+....++
T Consensus 242 ~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~~ar~~~~~aa~~~~~g~~~~~~~~ 321 (383)
T 1buc_A 242 TLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVYKAACKKQEGKPFTVDAA 321 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999988777778899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhc
Q 015286 347 GVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 347 ~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
++|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|++++++..|++.+++
T Consensus 322 ~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 383 (383)
T 1buc_A 322 IAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALLR 383 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeecCCCChHHHHHHHhhcccccCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999874
No 9
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Probab=100.00 E-value=9.8e-72 Score=544.53 Aligned_cols=377 Identities=35% Similarity=0.586 Sum_probs=356.2
Q ss_pred CCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 015286 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (410)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~ 109 (410)
..+++|+..+++.+++|+++.+.|...+.|+.+.+|. ++|++|.+.||+++.+|++|||.|+++.+...++|++++.|
T Consensus 27 ~~~~~e~~~l~~~~r~~~~~~~~p~~~~~d~~~~~~~--~~~~~l~e~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~ 104 (404)
T 2jif_A 27 QTFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEK--SVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVD 104 (404)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHTCCCH--HHHHHHHHTTTTSSSSCGGGTCCCCCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHhCcccHHHHhhcCCCCH--HHHHHHHHCCCCccCCchhhCCCCCCHHHHHHHHHHHHhcC
Confidence 4456777799999999999999998888999999999 99999999999999999999999999999999999999999
Q ss_pred cchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCC
Q 015286 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 189 (410)
Q Consensus 110 ~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~ 189 (410)
+++++.+..|..++..+|..+|+++||++|+|++.+|. ++++++|||++|||...++|+|++++|||+|||+|.|+||+
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~-~~~~a~tEp~~Gsd~~~~~t~A~~~g~g~vlnG~K~~is~a 183 (404)
T 2jif_A 105 ASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEK-VGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSA 183 (404)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHHTC-CEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC-cceEEecCCCCCCChhhceeEEEEeCCEEEEEeEEEeecCC
Confidence 99998888776566778889999999999999999985 78999999999999999999999999999999999999999
Q ss_pred CcCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhhc
Q 015286 190 PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269 (410)
Q Consensus 190 ~~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~ 269 (410)
..||+++|+++++++++.+++++|+||++.|||++.+.|+++|++++++++|.||||+||++++||.++.|+......+.
T Consensus 184 ~~Ad~~~v~ar~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~ 263 (404)
T 2jif_A 184 EHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLN 263 (404)
T ss_dssp TTCSEEEEEEESCGGGGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHH
T ss_pred cccCEEEEEEEeCCCCCCCceEEEEEecCCCCeEeccCcccccCCCCceEEEEEccEEECHHHcCCCCCchHHHHHHHHH
Confidence 99999999999865444567899999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhHHH
Q 015286 270 LERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVI 349 (410)
Q Consensus 270 ~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~~ak 349 (410)
..|+.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.++++++|++++.+++.++.+.+...+++++|
T Consensus 264 ~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~~~aK 343 (404)
T 2jif_A 264 EGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKEASMAK 343 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877677889999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhcc
Q 015286 350 LCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 409 (410)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 409 (410)
+++++.+.++++.++|+|||.||++++|++|+|||++...+++|++++++..|++.++++
T Consensus 344 ~~a~e~a~~v~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~~~~~ 403 (404)
T 2jif_A 344 YYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHIDAE 403 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcceecCCCcHHHHHhhccceeecCCHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999998764
No 10
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=2.1e-71 Score=537.22 Aligned_cols=370 Identities=39% Similarity=0.638 Sum_probs=353.3
Q ss_pred CcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccc
Q 015286 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGS 111 (410)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~~s 111 (410)
+++|+.++++.+++|+.+.+.|.+.+.|+.+.+|. ++|++|.+.||+++.+|++|||.|+++.+...++|++++.|++
T Consensus 3 ~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~ 80 (372)
T 2dvl_A 3 LTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPW--PQLKALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAADPS 80 (372)
T ss_dssp CCHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCCH--HHHHHHHHTTGGGTTSCGGGTSCCCCHHHHHHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHHHHhCchhHHHHHhhCCCCH--HHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhcCcH
Confidence 35677799999999998889888888999999999 9999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCCCc
Q 015286 112 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPV 191 (410)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~~~ 191 (410)
+++.+..|..++...|..+|+++|+++|+|++.+|+.++++++|||++|||...++|+|++++|||+|||+|.|+||+.+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~ 160 (372)
T 2dvl_A 81 VAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGH 160 (372)
T ss_dssp HHHHHHHHTSHHHHHHHHHCCHHHHHHTHHHHHTTSSCEEEECCCSSCSSCGGGCCCEEEEETTEEEEEEEEEEEETTTT
T ss_pred HHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEeEEEeecCCCc
Confidence 99888887436778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhhcHH
Q 015286 192 AQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLE 271 (410)
Q Consensus 192 ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~~~ 271 (410)
||+++|++++++ ++++|+||++.|||++.+.|+++|++++++++|.||||+||+++++|.++.|+......+...
T Consensus 161 Ad~~~v~a~~~~-----g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~ 235 (372)
T 2dvl_A 161 AHLYVVMARTEK-----GISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSG 235 (372)
T ss_dssp CSEEEEEEEETT-----EEEEEEEETTCTTEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHH
T ss_pred CCEEEEEEEeCC-----CcEEEEEeCCCCCeEecCcccccccCcCCeeEEEECcEEeCHHHcCCCCCchHHHHHHHHHHH
Confidence 999999999853 689999999999999999999999999999999999999999999999999998888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhHHHHH
Q 015286 272 RLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILC 351 (410)
Q Consensus 272 rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~~ak~~ 351 (410)
|+.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.++++++|++++.+++.++.+.+....++++|++
T Consensus 236 r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~~~aK~~ 315 (372)
T 2dvl_A 236 RVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQAIAFKIADMHVKIAAARALVLEAARKKDRGERFTLEASAAKLF 315 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCcccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887777889999999
Q ss_pred HHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhc
Q 015286 352 AAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 352 ~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
+++.+.++++.++|+|||.||+++++++|+|||++...+++|++++++..|++.+++
T Consensus 316 a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 372 (372)
T 2dvl_A 316 ASAAAVEVTREAVQVLGGYGYHRDYRVERYYRDAKVTEIYEGTSEIQRLVIARELYR 372 (372)
T ss_dssp HHHHHHHHHHHHHHHTGGGGGSGGGSHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhcCeecCCCCcHHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999874
No 11
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}
Probab=100.00 E-value=4.1e-71 Score=537.63 Aligned_cols=373 Identities=33% Similarity=0.563 Sum_probs=352.5
Q ss_pred CCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 015286 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (410)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~ 109 (410)
..+++|+..+++.+++|+.+.+.|.+.+.|+.+.+|. ++|++|.+.||+++.+|++|||.|+++.+.+.++|+++++|
T Consensus 8 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~ 85 (385)
T 2pg0_A 8 RYLREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPR--SFWAKMGENGFLCPWVDEKYGGLNADFAYSVVINEELEKVG 85 (385)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCH--HHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCCCH--HHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhC
Confidence 3356777799999999999999998889999999999 99999999999999999999999999999999999999999
Q ss_pred -cchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecC
Q 015286 110 -GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN 188 (410)
Q Consensus 110 -~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~ 188 (410)
+++++.+ |..++...|..+|+++|+++|+|++++|+.++++++|||++|||+..++|+|++++|||+|||+|.|+||
T Consensus 86 ~~~~~~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~ 163 (385)
T 2pg0_A 86 SSLVGIGL--HNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITN 163 (385)
T ss_dssp GGGHHHHH--HHHTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETT
T ss_pred CchHHHHH--HhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCcCHhhCeEEEEEcCCEEEEEeEEecccC
Confidence 8888765 5436677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCEEEEEEEeCCC--CCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHh
Q 015286 189 GPVAQTLVVYAKTDIK--AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMS 266 (410)
Q Consensus 189 ~~~ad~~~v~a~~~~~--~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~ 266 (410)
+.+||+++|.++++++ ++.+++++|+||++.|||++.++|+++|++++++++|.||||+||++++||.++.|+.....
T Consensus 164 ~~~Ad~~~v~a~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~ 243 (385)
T 2pg0_A 164 GIHADLIVVACKTDPQAKPPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYLME 243 (385)
T ss_dssp TTTCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCCEEEEEEEEEEEGGGEESCTTCHHHHHHH
T ss_pred CcccCEEEEEEEeCCccCCCCCceEEEEEeCCCCCeEecCCccccccCCCceEEEEEcceEEcHHHcCCCCCchHHHHHH
Confidence 9999999999998644 24457899999999999999989999999999999999999999999999999999988888
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhh
Q 015286 267 GLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCA 346 (410)
Q Consensus 267 ~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~ 346 (410)
.+...|+.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.++++++|++++.+++.++.+.+....++
T Consensus 244 ~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~d~g~~~~~~~~ 323 (385)
T 2pg0_A 244 KLQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKRVSEFQTVQFRLAEMATEIALGRTFVDRVIEEHMAGKQIVTEVS 323 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999998877778899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHh
Q 015286 347 GVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRAL 406 (410)
Q Consensus 347 ~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~ 406 (410)
++|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|++++++..|++.+
T Consensus 324 ~aK~~a~e~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~l 383 (385)
T 2pg0_A 324 MAKWWITEMAKRVAAEAMQLHGGYGYMEEYEIARRYRDIPVSAIYAGTNEMMKTIIARQL 383 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTGGGGGBTTSHHHHHHHHGGGGGTTTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccCCCCcHHHHHhhhcCceeecCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999975
No 12
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*
Probab=100.00 E-value=2.1e-71 Score=541.49 Aligned_cols=377 Identities=36% Similarity=0.561 Sum_probs=355.8
Q ss_pred CCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 015286 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (410)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~ 109 (410)
..+++|+.++++.+++|+.+.+.|.+.+.|+.+.+|. ++|++|.+.||+++.+|++|||.|+++.+...++|++++.|
T Consensus 14 ~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~ 91 (396)
T 1egd_A 14 FEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPV--PLIRRAWELGLMNTHIPENCGGLGLGTFDACLISEELAYGC 91 (396)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHCCCCH--HHHHHHHHHTCSSTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHhCchhHHHHHhhCCCCH--HHHHHHHHCCCCCCCCchhhCCCCCCHHHHHHHHHHHHhhC
Confidence 4456777799999999999999998888999999998 99999999999999999999999999999999999999999
Q ss_pred cchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCC
Q 015286 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 189 (410)
Q Consensus 110 ~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~ 189 (410)
+++++.+ .|..++...|..+|+++|+++|+|++.+|+.++++++|||++|||+..++|+|++++|||+|||+|.|+||+
T Consensus 92 ~~~~~~~-~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~ 170 (396)
T 1egd_A 92 TGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNG 170 (396)
T ss_dssp HHHHHHH-HHHHHHTHHHHHHCCHHHHHHHHHHHHHSCCCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETT
T ss_pred ccHHHHH-HhhhHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcchhhCeeEEEEeCCEEEEEEEEEcccCC
Confidence 9999877 565466667889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCEEEEEEEeCCCCCC---CCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHh
Q 015286 190 PVAQTLVVYAKTDIKAGS---KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMS 266 (410)
Q Consensus 190 ~~ad~~~v~a~~~~~~~~---~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~ 266 (410)
.+||+++|+++++++.+. +++++|+||++.|||++.++|+++|++++++++|.||||+||++++||.++.|+.....
T Consensus 171 ~~Ad~~~v~a~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~ 250 (396)
T 1egd_A 171 GKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMG 250 (396)
T ss_dssp TTCSEEEEEEECCCCTTSCGGGTEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGBSSSTTBHHHHHHH
T ss_pred cccCEEEEEEEeCCCCCCCCCCCeEEEEEeCCCCCeeeCCccccccccCCCeeEEEECcEEECHHHcCCCCCccHHHHHH
Confidence 999999999998754333 57899999999999999999999999999999999999999999999999999988888
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhh
Q 015286 267 GLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCA 346 (410)
Q Consensus 267 ~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~ 346 (410)
.+...|+.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.++++++|++++.+++.++.+.+...+++
T Consensus 251 ~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~~ 330 (396)
T 1egd_A 251 AFDKERPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYAS 330 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999998877777899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhcc
Q 015286 347 GVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 409 (410)
Q Consensus 347 ~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 409 (410)
++|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|++++++..|++.++++
T Consensus 331 ~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~~ 393 (396)
T 1egd_A 331 IAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYGGTSQIQRLIVAREHIDK 393 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTTBTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccCCChHHHHHHHhhCeeecCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999864
No 13
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=3.6e-71 Score=539.47 Aligned_cols=378 Identities=65% Similarity=1.113 Sum_probs=357.7
Q ss_pred CcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccc
Q 015286 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGS 111 (410)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~~s 111 (410)
+++|+..+++.+++|+.+.+.|.+.+.|+.+.+|...++|++|.+.||+++.+|++|||.|+++.+.+.++|++++.|++
T Consensus 13 ~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~~~ 92 (394)
T 1ivh_A 13 LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGA 92 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCchHHHHHHHHHCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhhchh
Confidence 46777799999999999999998888998888887558999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCCCc
Q 015286 112 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPV 191 (410)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~~~ 191 (410)
+++.+..|..++...|..+|+++|+++|+|++.+|+.++++++|||++|||+..++|+|++++|||+|||+|.|+||+.+
T Consensus 93 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~~~~ 172 (394)
T 1ivh_A 93 VGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPD 172 (394)
T ss_dssp HHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETGGG
T ss_pred HHHHHHHhhHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCcCcccceEEEEEcCCEEEEEeEEEeeCCCCc
Confidence 99988877546778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEEeCCC--CCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhhc
Q 015286 192 AQTLVVYAKTDIK--AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269 (410)
Q Consensus 192 ad~~~v~a~~~~~--~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~ 269 (410)
||+++|+++++++ ++..++++|+||++.|||++.+.|+++|++++++++|.||||+||+++++|.++.|+......+.
T Consensus 173 Ad~~~v~ar~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~ 252 (394)
T 1ivh_A 173 ADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLD 252 (394)
T ss_dssp CSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHHHHH
T ss_pred CCEEEEEEEeCCcccCCCCCeEEEEEeCCCCCeEeccccccccCCCCCeeEEEECcEEEcHHHcCCCCCchHHHHHHHHH
Confidence 9999999998754 23457899999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhHHH
Q 015286 270 LERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVI 349 (410)
Q Consensus 270 ~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~~ak 349 (410)
..|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++.+++.++.+.+....++++|
T Consensus 253 ~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~~~aK 332 (394)
T 1ivh_A 253 LERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDCAGVI 332 (394)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877778899999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhcc
Q 015286 350 LCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 409 (410)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 409 (410)
+++++.+.++++.++|+|||.||+++++++|+|||++...+++|++++++..|++.++++
T Consensus 333 ~~a~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~ll~~ 392 (394)
T 1ivh_A 333 LYSAECATQVALDGIQCFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNAD 392 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGBTTSTHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCccccCCchHHHHHHhcccccccCChHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999864
No 14
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=5.5e-71 Score=537.80 Aligned_cols=376 Identities=29% Similarity=0.505 Sum_probs=355.2
Q ss_pred CCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 015286 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (410)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~ 109 (410)
..+++|+..+++.+++|+.+.+.|.+.+.|+.+.+|. ++|++|.+.||+++.+|++|||.|+++.+...++|+++++|
T Consensus 17 ~~~~~e~~~~~~~~r~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~ 94 (393)
T 1rx0_A 17 MGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPV--DVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGC 94 (393)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCH--HHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCccHHHHhhcCCCCH--HHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhC
Confidence 3456777799999999999999998889999999999 99999999999999999999999999999999999999999
Q ss_pred cchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCC
Q 015286 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 189 (410)
Q Consensus 110 ~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~ 189 (410)
+++++.+..|. ++...|..+|+++||++|+|++++|+.++++++|||++|||...++|+|++++|||+|||+|.|+||+
T Consensus 95 ~~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~is~a 173 (393)
T 1rx0_A 95 TSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGA 173 (393)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred cchhHHHHHhH-HHHHHHHHHCCHHHHHHHHHHHhCCCceEEEEecCCCCCcCcccceeEEEEcCCEEEEEeEEEeecCC
Confidence 99998888876 77788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhhc
Q 015286 190 PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269 (410)
Q Consensus 190 ~~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~ 269 (410)
.+||+++|++++++ ++.+++++|+||++.|||++.+.|+++|++++++++|.||||+||+++++|..+.|+......+.
T Consensus 174 ~~Ad~~~v~a~~~~-~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~ 252 (393)
T 1rx0_A 174 GESDIYVVMCRTGG-PGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLN 252 (393)
T ss_dssp TTCSEEEEEEESSS-SSGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHH
T ss_pred ccCCEEEEEEEcCC-CCCCceEEEEEeCCCCCeEecCcccccccCCCCceEEEEcCeEeCHHHcCCCCCchHHHHHHHHH
Confidence 99999999999864 34557999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CChhhhhHH
Q 015286 270 LERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK-VDPKDCAGV 348 (410)
Q Consensus 270 ~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~-~~~~~~~~a 348 (410)
..|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++.+++.++.+. +....++++
T Consensus 253 ~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~~a 332 (393)
T 1rx0_A 253 GGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAARLMVRNAAVALQEERKDAVALCSMA 332 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999998864 345678999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhcc
Q 015286 349 ILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 409 (410)
Q Consensus 349 k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 409 (410)
|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|++++++..|+|.++++
T Consensus 333 K~~a~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~~ 393 (393)
T 1rx0_A 333 KLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILISRSLLQE 393 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGGGGBTTSTHHHHHHHHHHTTTSSSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcCCeeecCCChHHHHHHhccCceecCChHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999863
No 15
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Probab=100.00 E-value=3.6e-72 Score=546.91 Aligned_cols=378 Identities=34% Similarity=0.550 Sum_probs=351.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHh
Q 015286 28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR 107 (410)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~ 107 (410)
++..+++|+.++++.+++|+++.+.|.+.+.|+.+.+|. ++|++|.+.||+++.+|++|||.|+++.+...++|++++
T Consensus 15 m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~eel~~ 92 (396)
T 3ii9_A 15 LDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDA--AIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVER 92 (396)
T ss_dssp GGGGSCHHHHHHHHHHHHHCCCCCHHHHHHHHHHTCCCT--HHHHHHHHTTCSSTTSCGGGTSCCCCHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCCH--HHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHHH
Confidence 345567777799999999999999999889999999999 999999999999999999999999999999999999999
Q ss_pred cccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeec
Q 015286 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT 187 (410)
Q Consensus 108 ~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s 187 (410)
+|+++++.+..|..++...|..+|+++|+++|+|++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.|+|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs 172 (396)
T 3ii9_A 93 VDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWIT 172 (396)
T ss_dssp TCHHHHHHHHCCCCCCCHHHHHHSCHHHHHHHHHHHHHTSSCEEEECCCCC------CCCCEEEEETTEEEEEEEEEEEE
T ss_pred hChhHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCChhhCeeEEEEeCCEEEEEEEEEeEC
Confidence 99999988888764556778999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhh
Q 015286 188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG 267 (410)
Q Consensus 188 ~~~~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~ 267 (410)
|+.+||+++|.+++++ ++.+++++|+||++.|||++.+.|+++|++++++++|.||||+||++++++. +.|+......
T Consensus 173 ~a~~Ad~~~v~a~~~~-~g~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~l~~-~~g~~~~~~~ 250 (396)
T 3ii9_A 173 NSPIADVFVVWAKLDE-DGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPH-VKGLRGPFTC 250 (396)
T ss_dssp TGGGCSEEEEEEEEEE-TTEEEEEEEEEETTCTTEECCBCCCCSSCTTSCEEEEEEEEEEEEGGGBCTT-CCSTHHHHHH
T ss_pred CCccCCEEEEEEEecC-CCCCceEEEEEecCCCCeEeccccccccCCcCCeeEEEEccEEECHHHccCC-ChHHHHHHHH
Confidence 9999999999999862 2445689999999999999999999999999999999999999999999976 7888888888
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhH
Q 015286 268 LDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAG 347 (410)
Q Consensus 268 ~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~~ 347 (410)
+...|+.+++.++|+++++++.+++|+++|++||+|++++|.+|++|++|.++++++|++++.+++.+|.+.+....+++
T Consensus 251 l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~ 330 (396)
T 3ii9_A 251 LNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSI 330 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988777888999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhcc
Q 015286 348 VILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 409 (410)
Q Consensus 348 ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 409 (410)
+|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|++++++..|+|.+++-
T Consensus 331 aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~~~~~~ia~~llgl 392 (396)
T 3ii9_A 331 MKRNSCGKALDIARLARDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAQTGI 392 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCSCSGGGHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHhhCcccccCCCcHHHHHhhhcCceeecCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999863
No 16
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}
Probab=100.00 E-value=4.8e-71 Score=539.96 Aligned_cols=373 Identities=29% Similarity=0.497 Sum_probs=356.7
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCC-CcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHH
Q 015286 28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFP-QDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEIS 106 (410)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p-~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la 106 (410)
++..+++|+.++++.+++|+.+++.|.+.+.|+.+.+| . ++|++|.+.||+++.+ ++|||.|+++.+...++|+|+
T Consensus 26 m~~~l~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~p~~--~~~~~l~~~Gl~~l~~-~e~GG~g~~~~~~~~v~eela 102 (403)
T 3sf6_A 26 INAVLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELPAR--ELAVELGELGLLGMHL-KGYGCAGMSAVAYGLACLELE 102 (403)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHH--HHHHHHHHTTCSSTTS-CSTTCCCCCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhcChhHHHHHhcCCCCHH--HHHHHHHHCCCCcccc-hhhCCCCCCHHHHHHHHHHHH
Confidence 34556777789999999999999999999999999999 9 9999999999999999 999999999999999999999
Q ss_pred hcccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeee
Q 015286 107 RASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWC 186 (410)
Q Consensus 107 ~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~ 186 (410)
+.|+++++++..|..++...|..+|+++||++|+|++.+|+.++++++|||++|||+.+++|+|++++|||+|||+|.|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~i 182 (403)
T 3sf6_A 103 AGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWI 182 (403)
T ss_dssp HHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEE
T ss_pred HhcccHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEEccCCCCCCchhcEEEEEEECCEEEEEEEEEee
Confidence 99999998888876567788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHh
Q 015286 187 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMS 266 (410)
Q Consensus 187 s~~~~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~ 266 (410)
||+.+||+++|+++++. ++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++||. +.|+.....
T Consensus 183 s~a~~Ad~~~v~ar~~~-----g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~-~~g~~~~~~ 256 (403)
T 3sf6_A 183 TNGSVADVAVVWARTDE-----GIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARLPG-ATSLGAPLR 256 (403)
T ss_dssp ETGGGCSEEEEEEEETT-----EEEEEEEETTSTTEEEEECCSCSSCTTSCEEEEEEEEEEEEGGGBCTT-CCSTHHHHH
T ss_pred cCCcccCEEEEEEEeCC-----ceEEEEEECCCCCeEecCCCCccCCCCCceeEEEEccEEEcHHHccCC-ChhHHHHHH
Confidence 99999999999999862 689999999999999999999999999999999999999999999998 889988899
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhh
Q 015286 267 GLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCA 346 (410)
Q Consensus 267 ~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~ 346 (410)
.+...|+.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.++++++|++++.+++.++.+.+....++
T Consensus 257 ~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~pi~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~ 336 (403)
T 3sf6_A 257 CLNEARFGIVFGALGAARDCLETALAYACSREQFDRPIGGFQLTQQKLADMTLEYGKGFLLALHLGRQKDAGELAPEQVS 336 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877788899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhcc
Q 015286 347 GVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 409 (410)
Q Consensus 347 ~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 409 (410)
++|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|++++++..|++.+++.
T Consensus 337 ~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~llgl 399 (403)
T 3sf6_A 337 LGKLNNVREAIEIARTARTVLGASGITGEYPVMRHANNLESVLTYEGTSEMHTLIIGQALTGV 399 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEccccCcHHHHHhhcccceeecCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999999999999999999999999999864
No 17
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}
Probab=100.00 E-value=6.4e-71 Score=538.61 Aligned_cols=372 Identities=30% Similarity=0.478 Sum_probs=355.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhc
Q 015286 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (410)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~ 108 (410)
+..+++|+.++++.+++|+.+++.|.+.+.|+.+.+|. ++|++|.+.||+++.+ ++|||.|+++.+.+.++|+++++
T Consensus 23 ~~~l~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~Gl~~l~~-~e~GG~g~~~~~~~~v~eel~~~ 99 (399)
T 3swo_A 23 DRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPS--ELAKEFGNLGVLGMHL-QGYGCAGTNAVSYGLACMELEAG 99 (399)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCT--THHHHHHHHTCTTTTS-CSTTCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCCH--HHHHHHHHCCCCcCCh-hhhCCCCCCHHHHHHHHHHHHHh
Confidence 34567777799999999999989999889999999999 9999999999999999 99999999999999999999999
Q ss_pred ccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecC
Q 015286 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN 188 (410)
Q Consensus 109 ~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~ 188 (410)
|+++++++..|..++...|..+|+++|+++|+|++.+|+.++++++|||++|||+.+++|+|++++|||+|||+|.|+||
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~ 179 (399)
T 3swo_A 100 DSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITN 179 (399)
T ss_dssp CHHHHHHHHHHTTTHHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred CccHHHHHHHHhhhhhhHHHhcCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCCccceEEEEEeCCEEEEEEEEEeECC
Confidence 99999888877557778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhh
Q 015286 189 GPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGL 268 (410)
Q Consensus 189 ~~~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~ 268 (410)
+.+||+++|.++++ .++++|+||++.|||++.+.|+++|++++++++|.|+||+||+++++|. +.|+......+
T Consensus 180 a~~Ad~~~v~a~~~-----~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~-~~g~~~~~~~l 253 (399)
T 3swo_A 180 GNLADVATVWAQTD-----DGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLPL-AEGLSAPLSCL 253 (399)
T ss_dssp TTTCSEEEEEEBCT-----TSCEEEEEETTSTTEEEEECCCBSSCCSSCEEEEEEEEEEECGGGBCTT-CCSTHHHHHHH
T ss_pred CCccCEEEEEEEeC-----CceEEEEEeCCCCCeEeecCcCcccCCCCceeEEEEccEEEcHHHcCCC-ChhHHHHHHHH
Confidence 99999999999985 3689999999999999999999999999999999999999999999998 88998888899
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhHH
Q 015286 269 DLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGV 348 (410)
Q Consensus 269 ~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~~a 348 (410)
...|+.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.++++++|++++.+++.++.+.+....++++
T Consensus 254 ~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~a 333 (399)
T 3swo_A 254 NEARFGIVFGALGAARDSLETTIAYTQSREVFDKPLSNYQLTQEKLANMTVELGKGMLLAIHLGRIKDAEGVRPEQISLG 333 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeCCcchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988788889999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhcc
Q 015286 349 ILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 409 (410)
Q Consensus 349 k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 409 (410)
|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|++++++..|++.+++.
T Consensus 334 K~~a~~~a~~v~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~llg~ 394 (399)
T 3swo_A 334 KLNNVREAIAIARECRTLLGGSGITLEYSPLRHANNLESVLTYEGTSEMHLLSIGKALTGK 394 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGBSSSTHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhhCcccccCCCcHHHHHHHhhcceeecCHHHHHHHHHHHHHcCc
Confidence 9999999999999999999999999999999999999999999999999999999999874
No 18
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}
Probab=100.00 E-value=3.6e-70 Score=531.03 Aligned_cols=372 Identities=28% Similarity=0.462 Sum_probs=349.0
Q ss_pred CCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 015286 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (410)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~ 109 (410)
..+++|+..+++.+++|+.+.+.|.+.+.|+.+.+|. ++|++|.+.||+++.+|++|||.|+++.+...++|++++.|
T Consensus 9 ~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~ 86 (385)
T 2eba_A 9 DLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPT--HLIPRFAELGFLGPTLPPEYGGAGVSSAAYGLICYELERVD 86 (385)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCG--GGHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCccHHHHHHhCCCCH--HHHHHHHHCCCcCCCCchhhCCCCCCHHHHHHHHHHHHHhC
Confidence 3456777799999999999999998888899999999 99999999999999999999999999999999999999999
Q ss_pred cchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCC-CCceeEEEEeCCeEEEeeeeeeecC
Q 015286 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDV-VGMKCKADRVDGGYIINGNKMWCTN 188 (410)
Q Consensus 110 ~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~-~~~~t~a~~~~~g~~lnG~k~~~s~ 188 (410)
+++++.+..|..++...|..+|+++||++|+|++.+|+.++++++|||++|||+ ..++|+|++++|||+|||+|.|+||
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~~t~A~~~~~g~~lnG~K~~~s~ 166 (385)
T 2eba_A 87 SGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITN 166 (385)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCCTTCTTSTTTTCCCEEEC--CEEEEEEEEEEEET
T ss_pred chHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCcCCCccccCeeEEEEeCCEEEEEeeeeccCC
Confidence 999988888765667788899999999999999999999999999999999999 8999999999999999999999999
Q ss_pred CCcCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhh
Q 015286 189 GPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGL 268 (410)
Q Consensus 189 ~~~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~ 268 (410)
+.+||+++|.++++ + + + +++|+||++.|||++.+.|+++|++++++++|.|+||+||+++++ ..++|+......+
T Consensus 167 ~~~Ad~~~v~a~~~-~-g-~-~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~l-~~~~g~~~~~~~l 241 (385)
T 2eba_A 167 GNLAHLAVIWAKDE-G-G-E-VLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRL-PKALGLKAPLSCL 241 (385)
T ss_dssp TTTCSEEEEEEECC-------EEEEEEETTSTTEEEEECCSBSSSCSSCEEEEEEEEEEEEGGGBC-TTCCSTHHHHHHH
T ss_pred CcccCEEEEEEEeC-C-C-c-EEEEEEeCCCCCeEecccccccccccCceeEEEEccEEEcHHHcc-CCCchHHHHHHHH
Confidence 99999999999985 2 2 3 889999999999999999999999999999999999999999999 6788888888888
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhHH
Q 015286 269 DLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGV 348 (410)
Q Consensus 269 ~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~~a 348 (410)
...|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++.+++.++.+.+...+++++
T Consensus 242 ~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~g~~~~~~~~~a 321 (385)
T 2eba_A 242 TQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKKQLVQAKLAEMLAWHTEGLLLAWRLARLKDEGKLTPAQVSLA 321 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeCCeeHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999887777788999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhc
Q 015286 349 ILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 349 k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
|.++++.+.++++.++|+|||.||+++++++|+|||++...+++|++++++..|++.+++
T Consensus 322 K~~a~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~~~~~~~~ia~~llg 381 (385)
T 2eba_A 322 KRQNVWKALQAARMARDILGGSGITLEYHAIRHMLNLETVYTYEGTHDVHTLVLGREITG 381 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccCCcChHHHHHHhccCceeeCChHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999875
No 19
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*
Probab=100.00 E-value=5e-70 Score=536.37 Aligned_cols=373 Identities=27% Similarity=0.453 Sum_probs=350.8
Q ss_pred CCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 015286 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (410)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~ 109 (410)
..+++|+..+++.+++|+++++.|...+.|+.+.+|. ++|++|.+.||+++.+| +|||.|+++.+...++|+++++|
T Consensus 53 ~~l~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~p~--~~~~~l~e~Gl~~l~~p-e~GG~G~~~~~~~~v~eela~~~ 129 (436)
T 2ix5_A 53 DLLTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFPF--HITPKLGAMGVAGGSIK-GYGCPGLSITANAIATAEIARVD 129 (436)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCG--GGHHHHHTTTCTTTTCC-STTCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHhhCChhhHHHHhcCCCCH--HHHHHHHHcCCCcCcCC-CCCCCCCCHHHHHHHHHHHHhhC
Confidence 4456777799999999999999988878787889999 99999999999999999 99999999999999999999999
Q ss_pred cchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCC
Q 015286 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 189 (410)
Q Consensus 110 ~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~ 189 (410)
+++++.+..|..++...|..+|+++||++|+|++++|+.++|+++|||++|||...++|+|++++|||+|||+|.|+||+
T Consensus 130 ~~~~~~~~~~~~~~~~~l~~~gt~~qk~~~l~~l~~G~~~~a~a~tEp~~GSd~~~~~t~A~~~gdg~vLnG~K~~is~a 209 (436)
T 2ix5_A 130 ASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNS 209 (436)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred ccHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCcccceEEEEEeCCEEEEeeeccCCCCC
Confidence 99988777775467778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhhc
Q 015286 190 PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269 (410)
Q Consensus 190 ~~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~ 269 (410)
.+||+++|+++++++ .++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++++.. .++......+.
T Consensus 210 ~~Ad~~lv~Ar~~~~---~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~-~g~~~~~~~l~ 285 (436)
T 2ix5_A 210 TFADLLIIFARNTTT---NQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGV-NSFQDTSKVLA 285 (436)
T ss_dssp TTCSEEEEEEEETTT---SSEEEEEEETTCTTEEEEECCCBSSSTTSCEEEEEEEEEEEEGGGBCTTC-SSHHHHHHHHH
T ss_pred cccCEEEEEEEECCC---CcEEEEEEECCCCCeEeeccccccCCCcCCceeEEeccEEECHHHcCCcc-ccHHHHHHHHH
Confidence 999999999998632 36899999999999999999999999999999999999999999999865 57877888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhHHH
Q 015286 270 LERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVI 349 (410)
Q Consensus 270 ~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~~ak 349 (410)
..|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++.+.+...+++++|
T Consensus 286 ~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfG~pi~~~q~vq~~la~~~~~~~aar~l~~~aa~~~d~g~~~~~~as~aK 365 (436)
T 2ix5_A 286 VSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGK 365 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876677889999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhcc
Q 015286 350 LCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 409 (410)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 409 (410)
+++++.+.++++.++|+|||.||+++++++|+|||++...+++|++++++..|++.+++.
T Consensus 366 ~~a~e~a~~v~~~a~q~~Gg~G~~~e~~l~r~~Rda~~~~i~~Gt~ei~~~~iar~llgl 425 (436)
T 2ix5_A 366 AWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTGI 425 (436)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGGGBGGGSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhCccccccCChHHHHHHHhhcceeecCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999998763
No 20
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Probab=100.00 E-value=1.7e-70 Score=535.58 Aligned_cols=373 Identities=37% Similarity=0.640 Sum_probs=355.1
Q ss_pred CCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCC-CcHHHHHHHHHcCCCCCCCCcCCCCCCC--CHHHHHHHHHHHH
Q 015286 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFP-QDVNLWKLMGNFNLHGITAPQEYGGLGL--GYLYHCIAMEEIS 106 (410)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p-~~~~~~~~l~~~Gl~~~~~p~~~GG~g~--~~~~~~~v~e~la 106 (410)
..+++|++++++.+++|+.+.+.|.+.+.|+.+.+| . ++|++|.+.||+++.+|++|||.|+ ++.+...++|+++
T Consensus 3 ~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~--~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~~~v~eela 80 (397)
T 3mpi_A 3 FNLSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYE--EAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIA 80 (397)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCTT--TTHHHHHHTTTTCTTSCGGGTSCCCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCHH--HHHHHHHHCCCCccCCChhhCCCCCCCCHHHHHHHHHHHH
Confidence 445677779999999999999999999999999999 9 9999999999999999999999999 9999999999999
Q ss_pred hcccchhHHHHhhhhHHHH-HHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeee
Q 015286 107 RASGSVGLSYGAHSNLCIN-QLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMW 185 (410)
Q Consensus 107 ~~~~s~~~~~~~~~~~~~~-~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~ 185 (410)
+.|+++++.+..|. ++.. .+..+|+++|+++|+|++.+|+.++++++|||+.|||+..++|+|++++|||+|||+|.|
T Consensus 81 ~~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~ 159 (397)
T 3mpi_A 81 RGSSALRVQLNMEV-LGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTW 159 (397)
T ss_dssp HHCHHHHHHHHHHT-TTTHHHHHHHSCHHHHHHHHHHHHTTSSCCCEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEE
T ss_pred hhCchHHHHHHHHH-HhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeEEEEEeCCEEEEEEEEEe
Confidence 99999999888875 6656 889999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcCCEEEEEEEeCCCCCCCCeEEEEE-eCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHH
Q 015286 186 CTNGPVAQTLVVYAKTDIKAGSKGITAFII-EKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVM 264 (410)
Q Consensus 186 ~s~~~~ad~~~v~a~~~~~~~~~~~~~flV-~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~ 264 (410)
+||+.+||+++|+++++++++..++.+|+| |++.|||++ ++|+++|++++++++|.||||+||+++++|.++.|+...
T Consensus 160 ~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~~Gv~v-~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~~ 238 (397)
T 3mpi_A 160 ISNAAQADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKT-SNLEKLGSHASPTGELFLDNVKVPKENILGKPGDGARIV 238 (397)
T ss_dssp EETTTTCSSEEEEEESCGGGGGGSEEEEEECTTTSTTEEE-EECCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHH
T ss_pred eCCCcccCEEEEEEEcCCCCCCCceEEEEEEcCCCCCeEe-ccCccccCcCCceeEEEEeeEEECHHHcCCCCCchHHHH
Confidence 999999999999999876545568999999 999999999 999999999999999999999999999999999999998
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCChh
Q 015286 265 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG-KVDPK 343 (410)
Q Consensus 265 ~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~-~~~~~ 343 (410)
...+...|+.+++.++|+++++++.+++|+++|++||+|+.++|.+|++|++|.++++++|++++.+++.++.+ .+...
T Consensus 239 ~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~~~~~~~ 318 (397)
T 3mpi_A 239 FGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMNQDMIAQMAVEVEAARLLAYKAAAAKDEGRLNNGL 318 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999987 56677
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHH-HHh
Q 015286 344 DCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIG-RAL 406 (410)
Q Consensus 344 ~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~-~~~ 406 (410)
.++++|+++++.+.++++.++|+|||.||++++|++|+|||++...+++|++++++..|+ |.+
T Consensus 319 ~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~~l 382 (397)
T 3mpi_A 319 DVAMAKYAAGEAVSKCANYAMRILGAYGYSTEYPVARFYRDAPTYYMVEGSANICKMIIALDQL 382 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSHHHHHHHHTTHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCeeecCCCCHHHHHhhccceeeecCHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999999999999999999999 765
No 21
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=4e-70 Score=527.03 Aligned_cols=360 Identities=28% Similarity=0.393 Sum_probs=333.7
Q ss_pred HHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccchhHHHHhhh
Q 015286 41 ESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHS 120 (410)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~~s~~~~~~~~~ 120 (410)
+.+++|+++++.|.+.+.|+.+.+|. ++|++|.+.||+++.+|++|||.|+++.+...++|+++++|+++++.+..|.
T Consensus 2 ~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~ 79 (366)
T 1r2j_A 2 PERDALLTDLVGDRAAEWDTSGELPR--DLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQG 79 (366)
T ss_dssp -CCHHHHHHHHSSCHHHHHHHTCCCH--HHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hHHHHHHHHhccccHHHHhhcCCCCH--HHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 56789999999998888999999999 9999999999999999999999999999999999999999999998888775
Q ss_pred hHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCCCcCCEEEEEEE
Q 015286 121 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAK 200 (410)
Q Consensus 121 ~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~~~ad~~~v~a~ 200 (410)
.++...|. +|+++||++|+|++.+|+ ++++++|||++|||+..++|+|++++|||+|||+|.|+||+.+||+++|+++
T Consensus 80 ~~~~~~l~-~g~~~q~~~~l~~~~~G~-~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~ 157 (366)
T 1r2j_A 80 MAAWTVQR-LGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGL 157 (366)
T ss_dssp HHHHHHHH-HSCHHHHHHHHHHTTCC--CEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCSEEEEEEB
T ss_pred HHHHHHHH-hCCHHHHHHHHHHHhCCC-eeEEEeCCCCCCCchhhCEeEEEEeCCEEEEEEEEecccCCcccCEEEEEEE
Confidence 46667788 999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHH-HhhhcHHHHHHHHHH
Q 015286 201 TDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVM-MSGLDLERLVLAAGP 279 (410)
Q Consensus 201 ~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~-~~~~~~~rl~~aa~~ 279 (410)
+++ + ++++|+||++.|||++.+.|+++|++++++++|.||||+||+++++|.++.|+... ...+...|+.+++.+
T Consensus 158 ~~~--~--g~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~~l~~~r~~~aa~~ 233 (366)
T 1r2j_A 158 QED--G--SGAVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGC 233 (366)
T ss_dssp CSS--S--CCEEEEEETTSTTEEEEECSSCSSSTTSCCEEEEEEEEEEEGGGBCTTTTSCTTTTTHHHHHHHHHHHHHHH
T ss_pred eCC--C--ceEEEEEECCCCCeEecCCcCCccCCCCCeeEEEEeeEEEcHHHcCCCCCccHHHHHHHHhhHHHHHHHHHH
Confidence 853 2 78999999999999999999999999999999999999999999999988888777 777889999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCChhhhhHHHHHHHHHHHH
Q 015286 280 LGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG-KVDPKDCAGVILCAAERATQ 358 (410)
Q Consensus 280 ~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~-~~~~~~~~~ak~~~~~~a~~ 358 (410)
+|+++++++.+++|+++|++||+||.++|.+|++|++|.++++++|++++.+++.++.+ .+...+++++|+++++.+.+
T Consensus 234 ~G~a~~al~~a~~ya~~R~~fg~~i~~~q~v~~~la~~~~~~~~ar~~~~~aa~~~~~g~~~~~~~~~~aK~~a~~~a~~ 313 (366)
T 1r2j_A 234 VGILRACRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTAEQIAARVCEYASDHWDEGSPEMVPATILAKHVAAERAAA 313 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999887 56677899999999999999
Q ss_pred HHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhc
Q 015286 359 VTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 359 ~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
+++.++|+|||.||+++++++|+|||++...+++|++++++..|++.+++
T Consensus 314 ~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~ia~~~lg 363 (366)
T 1r2j_A 314 GAATAAQVLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVMLAQHALA 363 (366)
T ss_dssp HHHHHHHHHGGGGC--CCHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhCCeeecCCCcHHHHHHhccCceecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999876
No 22
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=8e-70 Score=533.71 Aligned_cols=378 Identities=22% Similarity=0.273 Sum_probs=345.6
Q ss_pred CCCcHHHHHHHHHHHHHHHhccCcchhhhhhcC------------------CCCCcHHHHHHHHHcCCCCCCCCcCCCCC
Q 015286 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSN------------------SFPQDVNLWKLMGNFNLHGITAPQEYGGL 91 (410)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~------------------~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~ 91 (410)
..+++++.++++.+++|+.+++.|...+.|+.. .+|. ++|++|.+.||+++.+|++|||.
T Consensus 7 ~~~~~~~~~l~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~e~G~~~~~~P~~~GG~ 84 (415)
T 4hr3_A 7 FAPSARAAELIAAVREFIDAEVMPVERAVLAHHDELLGARAGTTAELWHVPPELD--SLKAKARAAGLWNLFLPDPELGG 84 (415)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCSCSGGGGSCCTHHH--HHHHHHHHTTCSSTTCCCTTTSC
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhccccccccccccccccCcchhHH--HHHHHHHhCCCcCcCCCHHHCCC
Confidence 556777779999999999999888776666443 1445 99999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcccchhHHHHh-hhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCC-CCCCCCCceeE
Q 015286 92 GLGYLYHCIAMEEISRASGSVGLSYGA-HSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCK 169 (410)
Q Consensus 92 g~~~~~~~~v~e~la~~~~s~~~~~~~-~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~-~Gs~~~~~~t~ 169 (410)
|+++.+.+.++|+|++.|.+..+.... +...+...|..+|+++||++|+|++++|+.++|+++|||+ +|||+..++|+
T Consensus 85 g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~~gsd~~~~~t~ 164 (415)
T 4hr3_A 85 GLSNSEYAPLAEQMGRSLFAPTVFNCNAPDSGNMEVLHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAAT 164 (415)
T ss_dssp CCCHHHHHHHHHHHTTCSSHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHTTSCEEEEECCCTTSCTTSGGGCCCE
T ss_pred CCCHHHHHHHHHHHhcccchHHHHHHhccccchHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCchhhCeeE
Confidence 999999999999999988654443222 2213346789999999999999999999999999999999 99999999999
Q ss_pred EEEeCCeEEEeeeeeeecCCCc--CCEEEEEEEeCCCC-CCCCeEEEEEeCCCCCeeeccccccccCCCCC--ceeEEec
Q 015286 170 ADRVDGGYIINGNKMWCTNGPV--AQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSD--TCELVFE 244 (410)
Q Consensus 170 a~~~~~g~~lnG~k~~~s~~~~--ad~~~v~a~~~~~~-~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~--s~~v~f~ 244 (410)
|++++|||+|||+|.|+||+.+ ||+++|+++++++. +..++++|+||++.|||++.++|+++|+++++ +++|.|+
T Consensus 165 A~~~g~g~~lnG~K~~is~a~~~~Ad~~~v~a~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~~~v~fd 244 (415)
T 4hr3_A 165 AVVEGDEVVINGRKWWSTGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHGVVSFD 244 (415)
T ss_dssp EEEETTEEEEEEEEEEEETTTSTTEEEEEEEEECCTTSCTTSSEEEEEEETTSTTEEEEEECCBTTBCCTTTCEEEEEEE
T ss_pred EEEECCEEEEeeEEeeECCCCCCCCCEEEEEEEeCCCCCCCCceEEEEEEcCCCceEecCCCCccccCCCCCCeeEEEEc
Confidence 9999999999999999999966 99999999997543 44689999999999999999999999999987 9999999
Q ss_pred eeeeCCCCcccCCCchHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHH
Q 015286 245 NCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSS 324 (410)
Q Consensus 245 ~v~VP~~~~lg~~~~g~~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~ 324 (410)
||+||++++||.++.|+.+....+...|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++
T Consensus 245 dv~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aa 324 (415)
T 4hr3_A 245 NVRLPADAFIAGPGKGFEIAQGRLGPGRVHHAMRLIGLAEVALEHACRRGLDRTAFGKPLVNLGGNRERIADARIAINQT 324 (415)
T ss_dssp EEEEEGGGBSSCTTCHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSTTHHHHHHHHHHHHHHH
T ss_pred cEEECHHHcCCCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhC--CCCChhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHH
Q 015286 325 RSYVYSVARDCDN--GKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMII 402 (410)
Q Consensus 325 ~~~~~~a~~~~d~--~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i 402 (410)
|++++.+++.++. +.+....++++|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|++++++..|
T Consensus 325 r~~~~~aa~~~d~~~~~~~~~~~~~aK~~a~e~a~~v~~~a~qi~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~i 404 (415)
T 4hr3_A 325 RLLVLHAAWLLDTVGIMGALSAVSEIKVAAPNMAQQVIDMAIQIHGGGGLSNDFPLAAAWVNARALRLADGPDEVHRGVV 404 (415)
T ss_dssp HHHHHHHHHHHHHTCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGSSSSSHHHHHHHHHHTTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCchHHHHHHHhhhheeecCcHHHHHHHH
Confidence 9999999999987 44567789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcc
Q 015286 403 GRALLKQ 409 (410)
Q Consensus 403 ~~~~~~~ 409 (410)
++.++++
T Consensus 405 a~~~l~~ 411 (415)
T 4hr3_A 405 ARIELAK 411 (415)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9999875
No 23
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=100.00 E-value=3.6e-69 Score=546.82 Aligned_cols=375 Identities=32% Similarity=0.546 Sum_probs=344.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhccCcchhhhhhcC-CCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHH
Q 015286 28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSN-SFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEIS 106 (410)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la 106 (410)
.++..++|+.++++.+++|+.+++.|...++|+.+ .+|. ++|++|.+.||+++.+|++|||.|+++.+...++|+++
T Consensus 29 ~p~~lt~eq~~l~~~vr~f~~~~~~p~~~~~d~~~~~~~~--~~~~~l~e~Gl~gl~vPee~GG~G~~~~~~~~v~Eel~ 106 (597)
T 3owa_A 29 TPEDFSSEHKMIAKTTEDFIVNEVLPELEYLEQHEFDRSV--RLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKFS 106 (597)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHTGGGHHHHTTTCHHHHH--HHHHHHHHTTTTCTTSCGGGTCCCCCHHHHHHHHHHHG
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCcCCH--HHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHH
Confidence 34555677779999999999999999888888765 5777 99999999999999999999999999999999999999
Q ss_pred hcccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeC--CeEEEeeeee
Q 015286 107 RASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVD--GGYIINGNKM 184 (410)
Q Consensus 107 ~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~--~g~~lnG~k~ 184 (410)
+.+++ +..+..|..++...+..+|+++||++|+|++++|+.++++++|||++|||+.+++|+|++++ ++|+|||+|.
T Consensus 107 ~~~~~-~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~la~Ge~~~a~alTEp~aGSD~~~~~T~A~~~~dG~~yvLnG~K~ 185 (597)
T 3owa_A 107 RAGGF-AITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQ 185 (597)
T ss_dssp GGTHH-HHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEE
T ss_pred ccchH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCcceeeEecCCCCCCCcccceeEEEEeCCCCEEEEeeEEE
Confidence 98643 44455554455567889999999999999999999999999999999999999999999964 4599999999
Q ss_pred eecCCCcCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHH
Q 015286 185 WCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVM 264 (410)
Q Consensus 185 ~~s~~~~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~ 264 (410)
|+||+.+||+++|++++++ .++++|+||++.|||++.+.|+++|++++++++|.|+||+||.+++||..+.|+.+.
T Consensus 186 ~is~a~~Ad~~lV~Art~~----~g~s~flV~~~~pGv~v~~~~~~~Glrgs~t~~v~fddV~VP~~~lLG~~g~G~~~~ 261 (597)
T 3owa_A 186 WITNSAFADVFIVYAKIDG----EHFSAFIVEKDYAGVSTSPEEKKMGIKCSSTRTLILEDALVPKENLLGEIGKGHIIA 261 (597)
T ss_dssp EEETTTTCSEEEEEEEETT----TEEEEEEEETTSTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHH
T ss_pred EeCCCccCCEEEEEEEeCC----CceEEEEEeCCCCCeEEecccccccCCCCCceEEEEeceeecHHHhcCcccchHHHH
Confidence 9999999999999999864 378999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----
Q 015286 265 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK----- 339 (410)
Q Consensus 265 ~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~----- 339 (410)
...++.+|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++.+++.+|.+.
T Consensus 262 ~~~l~~~R~~~aa~~lG~a~~al~~a~~ya~~R~qfG~pi~~~q~vq~~LA~m~~~~~aar~l~~~aa~~~d~~~~~~~~ 341 (597)
T 3owa_A 262 FNILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARFPLIQEKLANMAAKTYAAESSVYRTVGLFESRMSTLSE 341 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887642
Q ss_pred --------------CChhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHH
Q 015286 340 --------------VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRA 405 (410)
Q Consensus 340 --------------~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~ 405 (410)
+...+++++|+++++.+.++++.++|+|||.||++++|++|+|||++...+++|++++++..|++.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~s~aK~~ase~a~~v~~~a~qi~GG~G~~~e~~ler~~RDar~~~i~eGt~ei~r~~Ia~~ 421 (597)
T 3owa_A 342 EEVKDGKAVAASIAEYAIECSLNKVFGSEVLDYTVDEGVQIHGGYGFMAEYEIERMYRDSRINRIFEGTNEINRLIVPGT 421 (597)
T ss_dssp HHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHGGGGTSSSCHHHHHHHHHHH
T ss_pred cccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccChHHHHHHHhhhhheeCcHHHHHHHHHHHH
Confidence 234568899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcc
Q 015286 406 LLKQ 409 (410)
Q Consensus 406 ~~~~ 409 (410)
++++
T Consensus 422 ll~~ 425 (597)
T 3owa_A 422 FLRK 425 (597)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 24
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*
Probab=100.00 E-value=5.7e-68 Score=516.73 Aligned_cols=371 Identities=29% Similarity=0.465 Sum_probs=347.7
Q ss_pred CCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 015286 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (410)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~ 109 (410)
..+++|+.++++.+++|+.+.+.|...+.|+.+.+|. ++|++|.+.||+++.+ ++|||.|+++.+...++|++++.|
T Consensus 12 ~~~~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~Gl~~l~~-~~~GG~g~~~~~~~~~~eel~~~~ 88 (392)
T 1siq_A 12 EQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHR--EIISEMGELGVLGPTI-KGYGCAGVSSVAYGLLARELERVD 88 (392)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCT--HHHHHHHHTTCSSTTC-EETTEECCCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCH--HHHHHHHhCCCCcccH-HhhCCCCCCHHHHHHHHHHHHHhC
Confidence 4456777799999999999999888888888889999 9999999999999999 999999999999999999999999
Q ss_pred cchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEe--CCeEEEeeeeeeec
Q 015286 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIINGNKMWCT 187 (410)
Q Consensus 110 ~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~--~~g~~lnG~k~~~s 187 (410)
+++++.+..|..++...+..+|+++|+++|+|++.+|+.++++++|||++|||+..++|+|+++ +|||+|||+|.|+|
T Consensus 89 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~~~g~~lnG~K~~vs 168 (392)
T 1siq_A 89 SGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWIT 168 (392)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEEEEEEEEE
T ss_pred cHHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEECCCCCCcCccccEEEEEEeCCCCEEEEEEEEEeec
Confidence 9998877666545567788999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCcCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhh
Q 015286 188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG 267 (410)
Q Consensus 188 ~~~~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~ 267 (410)
|+.+||+++|.+++++ .++.+|+||++.|||++.+.|+++|++++++++|.||||+||++++++.. .|+......
T Consensus 169 ~~~~Ad~~~v~a~~~~----g~~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~-~g~~~~~~~ 243 (392)
T 1siq_A 169 NSPMADLFVVWARCED----GCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGA-SSLGGPFGC 243 (392)
T ss_dssp TGGGCSEEEEEEEETT----SCEEEEEEETTCTTEECCBCCCCSSSTTSCEEEEEEEEEEEEGGGBCTTC-CSSHHHHHH
T ss_pred CCcccCEEEEEEEECC----CCEEEEEEeCCCCCeEeccccccccccCCceEEEEEccEEECHHHcCCcc-cCHHHHHHH
Confidence 9999999999999863 24889999999999999999999999999999999999999999999875 577777777
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhH
Q 015286 268 LDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAG 347 (410)
Q Consensus 268 ~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~~ 347 (410)
+...|+.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.++++++|++++.+++.++.+.+....+++
T Consensus 244 l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~~ar~~~~~aa~~~d~~~~~~~~~~~ 323 (392)
T 1siq_A 244 LNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSL 323 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999987766777899
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhc
Q 015286 348 VILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 348 ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
+|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|++++++..+++.+++
T Consensus 324 aK~~~~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~llg 384 (392)
T 1siq_A 324 LKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITG 384 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTGGGGGSGGGSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccccCCCcHHHHHhhCcCCeeecCcHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999875
No 25
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=1.8e-67 Score=534.76 Aligned_cols=370 Identities=34% Similarity=0.567 Sum_probs=341.4
Q ss_pred cHHHHHHHHHHHHHHHhccCcchhhhhhc-CCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccc
Q 015286 33 DDTQLQFKESVGQFARENIAPRAANIDQS-NSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGS 111 (410)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~~s 111 (410)
++|+..+++.+++|+.+.+.|...+.+.. ..+|+ ++|++|.+.||+++.+|++|||.|+++.+...++|++ ..|++
T Consensus 29 ~~e~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~p~--~~~~~l~e~Gl~~l~vPee~GG~g~~~~~~~~v~eel-~~~~s 105 (577)
T 2z1q_A 29 DESVKEIARTTRTFVEREVLPLLERMEHGELELNV--PLMRKAGELGLLAIDVPEEYGGLDLPKVISTVVAEEL-SGSGG 105 (577)
T ss_dssp CHHHHHHHHHHHHHHHTTTHHHHHHHHTTCGGGHH--HHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHH-TTSCT
T ss_pred CHHHHHHHHHHHHHHhccCchhHHhhhcccCCCCH--HHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHH-hhccc
Confidence 45556999999999998888775554432 36787 9999999999999999999999999999999999999 77999
Q ss_pred hhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEe--CCeEEEeeeeeeecCC
Q 015286 112 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIINGNKMWCTNG 189 (410)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~--~~g~~lnG~k~~~s~~ 189 (410)
+++.+..|.+++..+|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|+++ +++|+|||+|.|+||+
T Consensus 106 ~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~l~~G~~~~a~alTEp~aGSD~~~~~t~A~~~~dG~~~vLnG~K~~it~a 185 (577)
T 2z1q_A 106 FSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNA 185 (577)
T ss_dssp HHHHHHHHHTTTTHHHHHHCCHHHHHTTHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEEEEETT
T ss_pred HHHHHhhhHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeeEEEEeCCCCEEEEEEEeeCCCCC
Confidence 99888877655566789999999999999999999999999999999999999999999984 4579999999999999
Q ss_pred CcCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhhc
Q 015286 190 PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269 (410)
Q Consensus 190 ~~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~ 269 (410)
..||+++|++++++ .++++|+||++.|||++.+.|+++|++++++++|.|+||+||.+++||..+.|+......+.
T Consensus 186 ~~Ad~~~V~Ar~~g----~gis~flVp~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~VP~~~llg~~g~g~~~~~~~l~ 261 (577)
T 2z1q_A 186 GFAHLFTVFAKVDG----EHFTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLN 261 (577)
T ss_dssp TTCSEEEEEEEETT----TEEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCTTCTHHHHHHHHH
T ss_pred CccCEEEEEEEeCC----CeeEEEEEeCCCCCeEecCCCCCCCCCCCceeEEEecceeccHHHccCCCCchHHHHHHHHH
Confidence 99999999999852 57899999999999999999999999999999999999999999999999999999888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----------
Q 015286 270 LERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG----------- 338 (410)
Q Consensus 270 ~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~----------- 338 (410)
.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.+.++++|++++.+++.+|.+
T Consensus 262 ~~R~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~~~ 341 (577)
T 2z1q_A 262 VGRYKLGAGAVGGAKRALELSAQYATQRVQFGRPIGRFGLIQQKLGEMASRIYAAESAVYRTVGLIDEALLGKKGPEAVM 341 (577)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSSSBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999888764
Q ss_pred ---CCChhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhcc
Q 015286 339 ---KVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 409 (410)
Q Consensus 339 ---~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 409 (410)
.+....++++|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|++++++..|++.++++
T Consensus 342 ~~~~~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~e~~l~r~~Rda~~~~i~eGt~~i~~~~ia~~~l~~ 415 (577)
T 2z1q_A 342 AGIEEYAVEASIIKVLGSEVLDYVVDEGVQIHGGYGYSQEYPIERAYRDARINRIFEGTNEINRLLIPGMLLRR 415 (577)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHGGGGTTTSCHHHHHHHTTGGGSCC
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeecCCChHHHHHhhCcceeeeCcHHHHHHHHHHHHHHHH
Confidence 13345688999999999999999999999999999999999999999999999999999999999888753
No 26
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}
Probab=100.00 E-value=4.7e-67 Score=517.58 Aligned_cols=379 Identities=21% Similarity=0.300 Sum_probs=343.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHhccCcchhhhhh----cC-CCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHH
Q 015286 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQ----SN-SFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAME 103 (410)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----~~-~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e 103 (410)
+..+++|+.++++.+|+|+++++.|...+.++ .. .+|...++|++|.+.||+++.+|++|||.|+++.+...++|
T Consensus 4 ~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~e 83 (438)
T 3mkh_A 4 DFHLSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQISPAHGGTGGTLIESAILVE 83 (438)
T ss_dssp BCCCCHHHHHHHHHHHHHHHHTHHHHHHHHTTSCTTCHHHHHTTHHHHHHHHHTTTTGGGSCGGGTCCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcHHHHHhhccccccCcCCCcHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHH
Confidence 35567788899999999999999887666543 22 45511299999999999999999999999999999999999
Q ss_pred HHHhcccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcC--ceeeEEEecCCCCCC-----CCCCceeEEEEeCCe
Q 015286 104 EISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISG--EHVGALAMSEPNAGS-----DVVGMKCKADRVDGG 176 (410)
Q Consensus 104 ~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g--~~~~~~~~tep~~Gs-----~~~~~~t~a~~~~~g 176 (410)
+|++.|+++++.+..+. ++...+..+|+++ +++|+|++++| +.++|+++|||++|| |+.+++|+|++++||
T Consensus 84 ela~~~~~~~~~~~~~~-~~~~~l~~~g~~~-~~~~l~~~~~G~g~~~~~~a~tEp~~gs~~~~sd~~~~~t~A~~~g~g 161 (438)
T 3mkh_A 84 ECYSVEPSAALTIFATG-LGLTPINLAAGPQ-HAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEGDE 161 (438)
T ss_dssp HHHHHCHHHHHHHHHHH-HHHHHHHHHCCGG-GHHHHGGGSSSCSCCCEEEECCCTTCCTTTTCTTSCCCSCEEEEETTE
T ss_pred HHHhhChhHHHHHHHhh-HHHHHHHhhCCHH-HHHHHHHHhcCCCCceEEEEEccCCCCCCccccccccceeEEEEeCCE
Confidence 99999999998777665 6667788899999 99999999986 589999999999998 588899999999999
Q ss_pred EEEeeeeeeecCCC-----cCCEEEEEEEeCC-----C-CCCCCeEEEEEeCCC-----CC-eeeccccccccCCCCCce
Q 015286 177 YIINGNKMWCTNGP-----VAQTLVVYAKTDI-----K-AGSKGITAFIIEKGM-----PG-FSTAQKLDKLGMRGSDTC 239 (410)
Q Consensus 177 ~~lnG~k~~~s~~~-----~ad~~~v~a~~~~-----~-~~~~~~~~flV~~~~-----~g-v~~~~~~~~~Gl~~~~s~ 239 (410)
|+|||+|.|+||+. .||+++|++++.. + ++..++++|+||++. || |++.+.|+++|+++++++
T Consensus 162 ~~lnG~K~~is~a~~~~~~~Ad~~~v~a~~~~~~~~~~~~~~~g~~~flV~~~~~~~~~pG~v~v~~~~~~~G~r~~~~~ 241 (438)
T 3mkh_A 162 WVINGEKMWATNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVATPGHTSVSGP 241 (438)
T ss_dssp EEEEEEECSCTTTTCTTSSCCSEEEEEEEECSSCCCTTCCGGGGEEEEEEEHHHHHHHCTTSEEEEECCCCSSCTTCCCC
T ss_pred EEEEeEEEEecCCCccccccCcEEEEEEEecCcccCcccCCCCceEEEEEecCccccCCCCcEEecCcCCCcCCcCCCce
Confidence 99999999999997 8999999999853 1 223578999999875 88 999999999999999999
Q ss_pred eEEeceeeeCCCCcccCCCchHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CccccchhHHHHHHHHH
Q 015286 240 ELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG-RPLGEFQFIQGKTADMY 318 (410)
Q Consensus 240 ~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g-~~l~~~~~v~~~la~~~ 318 (410)
+|.||||+||++++||.++.|+......+..+|+.+++.++|+++++++.+++|+++|++|| +||+++|.+|++|++|.
T Consensus 242 ~v~fddv~VP~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~~g~~pi~~~q~vq~~la~~~ 321 (438)
T 3mkh_A 242 HVRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGGAVPLLERQAFADLLSGVK 321 (438)
T ss_dssp EEEEEEEEEEGGGEEECTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCGGGSHHHHHHHHHHH
T ss_pred EEEECcEEECHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEeCCCeeccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCC----hhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCCh
Q 015286 319 TALQSSRSYVYSVARDCDNGKVD----PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGT 394 (410)
Q Consensus 319 ~~l~a~~~~~~~a~~~~d~~~~~----~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~ 394 (410)
++++++|++++++++.++.+.+. ...++++|+++++.+.++++.++|++||.||++++|++|+|||++.+.+++|+
T Consensus 322 ~~~~aar~~~~~aa~~~d~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~a~q~~Gg~G~~~~~~l~r~~Rda~~~~i~~Gt 401 (438)
T 3mkh_A 322 IQTEAARALTWKAAHAMENGPGDYDARRELALAAKVFCSEAAVKACTDVINAVGISAYDLQRPFSDLLNTAVVLPIFDGG 401 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGCTTSSHHHHHHHHTHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhccCCCcHHHHHHHhheeeeecCC
Confidence 99999999999999999877532 22367899999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHHHhhcc
Q 015286 395 S-EIRRMIIGRALLKQ 409 (410)
Q Consensus 395 ~-~~~~~~i~~~~~~~ 409 (410)
+ ++++..|++.++++
T Consensus 402 ~~~v~~~~i~r~ll~~ 417 (438)
T 3mkh_A 402 NVGIRRRHLQQLMLKP 417 (438)
T ss_dssp TTTTHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHHHhc
Confidence 9 99999999999975
No 27
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Probab=100.00 E-value=4.8e-66 Score=510.32 Aligned_cols=378 Identities=19% Similarity=0.314 Sum_probs=342.5
Q ss_pred CCCcHHHHHHHHHHHHHHHhccCcchhhhhhc----CCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHH
Q 015286 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQS----NSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI 105 (410)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~l 105 (410)
..+++|+..+++.+++|+++++.|...+.|+. +.+|...++|++|.+.||+++.+|++|||.|+++.+.+.++|++
T Consensus 4 ~~~~~e~~~l~~~~r~f~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel 83 (439)
T 2c12_A 4 FKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEEL 83 (439)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTGGGHHHHHTTCSSHHHHHHTTHHHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCChhHHHHhhcccccCCCCChHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHH
Confidence 34567777999999999999998887666653 34551129999999999999999999999999999999999999
Q ss_pred HhcccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhh--cCceeeEEEecCCCCCC-----CCCCceeEEEEeCCeEE
Q 015286 106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI--SGEHVGALAMSEPNAGS-----DVVGMKCKADRVDGGYI 178 (410)
Q Consensus 106 a~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~--~g~~~~~~~~tep~~Gs-----~~~~~~t~a~~~~~g~~ 178 (410)
++.|+++++++..|. ++...+..+|+++|+++|+|+++ +|+.++|+++|||++|| |...++|+|++++|||+
T Consensus 84 a~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~~~G~~~~~~a~tEp~~Gs~~~~sd~~~~~t~A~~~~~g~~ 162 (439)
T 2c12_A 84 FAVEPATSITIVATA-LGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWV 162 (439)
T ss_dssp HTTCCTTHHHHHHHH-HHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEETTEEE
T ss_pred HhhChHHHHHHHHhH-HHHHHHHHhCCHHHHHHHHHHHhhcCCCEEEEEEecCCCCCCCccccccccceeEEEEcCCEEE
Confidence 999999999887775 66778899999999999999999 69999999999999997 57788999999999999
Q ss_pred EeeeeeeecCCC-----cCCEEEEEEEe-C----CC----CCCCCeEEEEEeCCCC------CeeeccccccccCCCCCc
Q 015286 179 INGNKMWCTNGP-----VAQTLVVYAKT-D----IK----AGSKGITAFIIEKGMP------GFSTAQKLDKLGMRGSDT 238 (410)
Q Consensus 179 lnG~k~~~s~~~-----~ad~~~v~a~~-~----~~----~~~~~~~~flV~~~~~------gv~~~~~~~~~Gl~~~~s 238 (410)
|||+|.|+||+. .||+++|++++ + ++ ++.+++++|+||++.| ||++.+.|+++|++++++
T Consensus 163 lnG~K~~is~~~~~~~~~Ad~~~v~ar~~~~~~~~~~~~~~~~~g~~~flV~~~~pGv~~~~Gv~v~~~~~~~G~r~~~~ 242 (439)
T 2c12_A 163 ISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSG 242 (439)
T ss_dssp EEEEEECCTTTTTTTSSCCSEEEEEEEECSCTTSCCCTTSCGGGGEEEEEECHHHHHTSCGGGEEEEECCCBSSCTTCCC
T ss_pred EEeEEEeecCCCccccccCcEEEEEEEcCCcccCccccccCCCCceEEEEEECCCCcccCCCceEeCCcccccccCCCCc
Confidence 999999999997 99999999998 5 32 2345789999999998 788999999999999999
Q ss_pred eeEEeceeeeCCCCcccCCCchHH-HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcCCccccchhHHHHHHH
Q 015286 239 CELVFENCFVPNENVLGQEGKGVY-VMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQ-REQFGRPLGEFQFIQGKTAD 316 (410)
Q Consensus 239 ~~v~f~~v~VP~~~~lg~~~~g~~-~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~-R~~~g~~l~~~~~v~~~la~ 316 (410)
++|.|+||+||++++||.++.|+. +....+...|+.+++.++|+++++++.+++|+++ |.+||+||+++|.+|++|++
T Consensus 243 ~~v~fddv~VP~~~~lg~~~~g~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~rr~~~G~~i~~~q~vq~~la~ 322 (439)
T 2c12_A 243 PHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLID 322 (439)
T ss_dssp CEEEEEEEEEEGGGBCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSSCGGGSHHHHHHHHH
T ss_pred eEEEEccEEecHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceeeCCeehhccHHHHHHHHH
Confidence 999999999999999999999988 8888889999999999999999999999999996 78899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCC----hhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccC
Q 015286 317 MYTALQSSRSYVYSVARDCDNGKVD----PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGA 392 (410)
Q Consensus 317 ~~~~l~a~~~~~~~a~~~~d~~~~~----~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~ 392 (410)
|.++++++|++++.+++.++.+.+. ...++++|+++++.+.++++.++|+|||.||+++++++|+|||++...+++
T Consensus 323 ~~~~~~aar~~~~~aa~~~~~~~~~~~~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~ 402 (439)
T 2c12_A 323 CKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFD 402 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGBTTSSHHHHHHHHTTTTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEcCCChHHHHHHhhhcceeec
Confidence 9999999999999999999887542 235789999999999999999999999999999999999999999999999
Q ss_pred ChH-HHHHHHHHHHhhc
Q 015286 393 GTS-EIRRMIIGRALLK 408 (410)
Q Consensus 393 G~~-~~~~~~i~~~~~~ 408 (410)
|++ ++++..|++.+..
T Consensus 403 G~~~~~~~~~i~~~l~~ 419 (439)
T 2c12_A 403 GGNIGLRRRQMQRVMAL 419 (439)
T ss_dssp SCTTTTHHHHHHHHHTS
T ss_pred CChHHHHHHHHHHHHhc
Confidence 988 7999999886653
No 28
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=100.00 E-value=1e-65 Score=523.08 Aligned_cols=365 Identities=33% Similarity=0.533 Sum_probs=338.3
Q ss_pred HHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccchhHHHH
Q 015286 38 QFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYG 117 (410)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~~s~~~~~~ 117 (410)
.+++.+++|+.+.+.+ .+.|+...+|+ ++|++|++.||+++.+|++|||.|++..+...++|+++++|+++++.+.
T Consensus 56 ~l~~~~~~~~~~~~~~--~~~d~~~~~p~--~~~~~l~e~Gl~~l~~P~e~GG~gl~~~~~~~v~e~l~~~~~s~a~~~~ 131 (607)
T 2uxw_A 56 ELVEPVSRFFEEVNDP--AKNDALEMVEE--TTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLG 131 (607)
T ss_dssp HHHHHHHHHHHHTCCH--HHHHHHTSCCH--HHHHHHHHTTTTCTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCH--HHhccccCCCH--HHHHHHHHcCCcCCCCChhhCCCCCCHHHHHHHHHHHHHcccHHHHHHH
Confidence 4889999999887755 34577788998 9999999999999999999999999999999999999999999998888
Q ss_pred hhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeC--CeEEEeeeeeeecCCCcCCEE
Q 015286 118 AHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVD--GGYIINGNKMWCTNGPVAQTL 195 (410)
Q Consensus 118 ~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~--~g~~lnG~k~~~s~~~~ad~~ 195 (410)
.|.+++...|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|++++ ++|+|||+|.|+|++..||++
T Consensus 132 ~~~~~g~~~l~~~Gt~eqk~~~Lp~l~~G~~~~~~alTEp~aGSD~~~~~t~A~~~~dG~~y~LnG~K~~is~~~~Ad~~ 211 (607)
T 2uxw_A 132 AHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIF 211 (607)
T ss_dssp HHHTTTTHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEECTTSSEEEEEEEEEEEETTTTCSEE
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceeEEEEeCCCCEEEEEeEEEeecCCcccCEE
Confidence 775455678889999999999999999999999999999999999999999999974 479999999999999999999
Q ss_pred EEEEEeCCCC---C--CCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhhcH
Q 015286 196 VVYAKTDIKA---G--SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDL 270 (410)
Q Consensus 196 ~v~a~~~~~~---~--~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~~ 270 (410)
+|+++++..+ + .+++++|+||++.|||++.+.|+++|++++++++|.|+||+||.+++||.++.|+..+...++.
T Consensus 212 lV~Ar~~~~~~~~g~~~~gis~flVp~~~~Gv~v~~~~~~~G~rg~~t~~v~fddv~VP~~~llG~~g~G~~~~~~~l~~ 291 (607)
T 2uxw_A 212 TVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNN 291 (607)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEEEEEGGGSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHH
T ss_pred EEEEEecCCCcccCCCCCceEEEEEeCCCCCeEEecCccccCCCCCCeeEEEeccEEecHHHhcCCCCchHHHHHHHHHH
Confidence 9999985321 1 3578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CChhhhhHHH
Q 015286 271 ERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK-VDPKDCAGVI 349 (410)
Q Consensus 271 ~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~-~~~~~~~~ak 349 (410)
+|+.+++.++|+++++++.+++|+++|+|||+||+++|.||++|++|.+.+++++++++.++..+|.+. +.....+++|
T Consensus 292 ~Rl~~aa~~~G~a~~al~~a~~ya~~R~qfG~pi~~~~~vq~~La~~~~~~eaaral~~~aa~~~d~~~~~~~~~~~~aK 371 (607)
T 2uxw_A 292 GRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISK 371 (607)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998764 3456789999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHh
Q 015286 350 LCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRAL 406 (410)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~ 406 (410)
+++++.+.++++.++|+|||.||+++++++|+|||++...+++|++++++..|++..
T Consensus 372 ~~~se~a~~v~~~a~qv~GG~G~~~e~~l~r~~Rda~~~~i~eGt~~i~~~~ia~~g 428 (607)
T 2uxw_A 372 IFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVALQG 428 (607)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHSSTTSHHHHHHHHGGGGTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCccccCccHHHHHHHhcccceeeCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999886543
No 29
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.3e-66 Score=506.96 Aligned_cols=378 Identities=20% Similarity=0.309 Sum_probs=334.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHhccCcchh---hhhhc-----CCCCC---cHHHHHHHHHcCCCCCCCCcCCCCCCCCHHH
Q 015286 29 SLLFDDTQLQFKESVGQFARENIAPRAA---NIDQS-----NSFPQ---DVNLWKLMGNFNLHGITAPQEYGGLGLGYLY 97 (410)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~-----~~~p~---~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~ 97 (410)
+..+++|+.++++.+++|+++++.|... +.|+. ..+++ ..++|++|.+.||+++.+|+ |.|+++.+
T Consensus 20 ~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~---G~g~~~~~ 96 (428)
T 2wbi_A 20 LFVQTRKGQEVLIKVKHFMKQHILPAEKEVTEFYVQNENSVDKWGKPLVIDKLKEMAKVEGLWNLFLPA---VSGLSHVD 96 (428)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTHHHHHHHHHC----------CCSCCHHHHHHHHHHHHTTCCSTTCHH---HHCCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhCCchhcchhHHhhhccccccccCCcccHHHHHHHHHHCCCCeecCCC---CCCCCHHH
Confidence 3556778889999999999998877655 55532 23321 23899999999999999999 88999999
Q ss_pred HHHHHHHHHhcccc-hhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCC-CCCCCCCceeEEEEeCC
Q 015286 98 HCIAMEEISRASGS-VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDG 175 (410)
Q Consensus 98 ~~~v~e~la~~~~s-~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~-~Gs~~~~~~t~a~~~~~ 175 (410)
...++|+++++|.+ .++....+...+...|..+|+++||++|+|++++|+.++|+++|||+ +|||+..++|+|++++|
T Consensus 97 ~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~aGsd~~~~~t~A~~~~~ 176 (428)
T 2wbi_A 97 YALIAEETGKCFFAPDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDED 176 (428)
T ss_dssp HHHHHHHHTTSTTHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHHTSSEEEEECCCTTSCTTSGGGCCCEEEEETT
T ss_pred HHHHHHHHHhhcchhhhHhhhccchhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEEecCCcCCCCcccceEEEEEeCC
Confidence 99999999999843 23322222224566788999999999999999999999999999999 99999999999999999
Q ss_pred eEEEeeeeeeecCCCc--CCEEEEEEEeCCCC--CCCCeEEEEEeCCCCCeeeccccccccCCCCC---ceeEEeceeee
Q 015286 176 GYIINGNKMWCTNGPV--AQTLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSD---TCELVFENCFV 248 (410)
Q Consensus 176 g~~lnG~k~~~s~~~~--ad~~~v~a~~~~~~--~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~---s~~v~f~~v~V 248 (410)
||+|||+|.|+||+.+ ||+++|+++++++. +..++++|+||++.|||++.++|+++|+++++ +++|.||||+|
T Consensus 177 g~~lnG~K~~is~a~~~~Ad~~~v~art~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fddv~V 256 (428)
T 2wbi_A 177 SYVINGKKWWSSGAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEIHFNQVRV 256 (428)
T ss_dssp EEEEEEEEEEEETTTSTTEEEEEEEEECCCTTSCGGGCEEEEEEETTSTTEEEEEECCBTTBCCGGGCCEEEEEEEEEEE
T ss_pred EEEEEeEEeccCCCCCCcCCEEEEEEEeCCccCCCCCceEEEEEECCCCcEEecCCCCccccCCCCCCCeEEEEeCceEE
Confidence 9999999999999988 99999999986542 34578999999999999999999999999994 99999999999
Q ss_pred CCCCcccCCCchHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHH
Q 015286 249 PNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYV 328 (410)
Q Consensus 249 P~~~~lg~~~~g~~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~ 328 (410)
|++++||.++.|+......+...|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|+++
T Consensus 257 P~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~ 336 (428)
T 2wbi_A 257 PATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLAERALQIMCERATQRIAFKKKLYAHEVVAHWIAESRIAIEKIRLLT 336 (428)
T ss_dssp EGGGBCSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHhcCCccchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhC-C-CCChhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHh
Q 015286 329 YSVARDCDN-G-KVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRAL 406 (410)
Q Consensus 329 ~~a~~~~d~-~-~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~ 406 (410)
+.+++.++. + .+....++++|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|++++++..|++.+
T Consensus 337 ~~aa~~~d~~g~~~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~G~~~~~~~~ia~~~ 416 (428)
T 2wbi_A 337 LKAAHSMDTLGSAGAKKEIAMIKVAAPRAVSKIVDWAIQVCGGAGVSQDYPLANMYAITRVLRLADGPDEVHLSAIATME 416 (428)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGSTTSSHHHHHHHHHHHTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcHHHHHHHHhhcEecCChHHHHHHHHHHHH
Confidence 999998876 2 34567789999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcc
Q 015286 407 LKQ 409 (410)
Q Consensus 407 ~~~ 409 (410)
++.
T Consensus 417 l~~ 419 (428)
T 2wbi_A 417 LRD 419 (428)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 30
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}
Probab=100.00 E-value=5.9e-64 Score=489.37 Aligned_cols=366 Identities=22% Similarity=0.315 Sum_probs=325.7
Q ss_pred CCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCC-CCHHHHHHHHHHHHhc
Q 015286 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLG-LGYLYHCIAMEEISRA 108 (410)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g-~~~~~~~~v~e~la~~ 108 (410)
..+++|+.++++.+++|+. .+.|.+.+.|+.+.+|. ++|++|.+.||+++.+|++|||.| .++.+...++|++++.
T Consensus 7 ~~lt~e~~~~~~~~r~~~~-~~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~eel~~~ 83 (395)
T 3mxl_A 7 APLTPAGRTVVDLLAGVIP-RISAEAADRDRTGTFPV--EAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALMRLAEA 83 (395)
T ss_dssp SCCSHHHHHHHHHHTTTHH-HHHHHHHHHHHHTCCCH--HHHHHHHHHTGGGCSSCTTTTSCCCCCHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHH-HHhhchHHHhhhCCCCH--HHHHHHHHCCCcCcCCChhhCCCCCcCHHHHHHHHHHHHhh
Confidence 5556777799999999986 58889999999999999 999999999999999999999999 9999999999999999
Q ss_pred ccchhHHHHhhhhHHHHHH--HhcCCHHHH---hhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeee
Q 015286 109 SGSVGLSYGAHSNLCINQL--VRHGSPAQK---DKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNK 183 (410)
Q Consensus 109 ~~s~~~~~~~~~~~~~~~l--~~~g~~~~~---~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k 183 (410)
|+++++.+..|...+..++ ..+|+++|| ++|+|++.+|+.++++++|||++|+ ..+++ +++|||+|||+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~qk~~~~~~l~~~~~g~~~~~~a~tEp~~~~--~~~~t---~~~~g~~lnG~K 158 (395)
T 3mxl_A 84 DASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPGVV--TELHS---DGAGGWLLSGRK 158 (395)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHTSCCEECCCSBCTTCC--CEEEE---CSSSCEEEEEEE
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhcCCHHHHhHHHHHHHHHhcCCcEEEEEecCCCCCC--CceEE---ecCCEEEEeeEE
Confidence 9999998887754444443 356999999 9999999999999999999998753 22332 378899999999
Q ss_pred eeecCCCcCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCccc--CCCchH
Q 015286 184 MWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLG--QEGKGV 261 (410)
Q Consensus 184 ~~~s~~~~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg--~~~~g~ 261 (410)
.|+||+.+||+++|+++++++++.+++++|+||++.|||++.+.|+++|++++++++|.|+||+||+++++| ..+.++
T Consensus 159 ~~is~a~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~g~ 238 (395)
T 3mxl_A 159 VLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGARR 238 (395)
T ss_dssp EEETTGGGCSEECCCEEEECTTSCEEEECCCEETTCTTEEEECCCCBSSCTTSCCEEEEEEEEEECGGGCCEEEESSCCC
T ss_pred EEecCccccCEEEEEEEeCCCCCCCceEEEEEECCCCceEeCCCchhcCCCCCCcceEEEcceEcCHHHhcCCCCCCccH
Confidence 999999999999999999765555678999999999999999999999999999999999999999999998 667666
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhC----
Q 015286 262 YVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN---- 337 (410)
Q Consensus 262 ~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~---- 337 (410)
..........|+.+++.++|+++++++.+++|++ ++|+.++|.+|++|++|.++++++|++++.+++.++.
T Consensus 239 ~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~-----~r~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~ 313 (395)
T 3mxl_A 239 DAVLAGQTVSSITMLGIYAGIAQAARDIAVGFCA-----GRGGEPRAGARALVAGLDTRLYALRTTVGAALTNADAASVD 313 (395)
T ss_dssp TTHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH-----TTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 5444445568899999999999999999999998 4589999999999999999999999999999988775
Q ss_pred --CCCC------hhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCc-ccCChHHHHHHHHHHHhhc
Q 015286 338 --GKVD------PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYE-IGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 338 --~~~~------~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~-~~~G~~~~~~~~i~~~~~~ 408 (410)
..+. ...++++|+++++.+.++++.++|+|||.||+++++++|+|||++... +|+|++++++..|++.+++
T Consensus 314 ~~~~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~~~~~g~~~~~~~~ia~~~Lg 393 (395)
T 3mxl_A 314 LSGDPDERGRRMMTPFQYAKMTVNELAPAVVDDCLSLVGGLAYTAGHPLSRLYRDVRAGGFMQPYSYVDAVDYLSGQALG 393 (395)
T ss_dssp CCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGBTTSHHHHHHHHGGGGGGCSSCCHHHHHHHHHHHHSC
T ss_pred cccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhccCCCcHHHHHHHHHhccccCCCCHHHHHHHHHHHHhC
Confidence 1111 145678899999999999999999999999999999999999999999 9999999999999999986
No 31
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}
Probab=100.00 E-value=3.3e-63 Score=486.58 Aligned_cols=362 Identities=17% Similarity=0.190 Sum_probs=322.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhc
Q 015286 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (410)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~ 108 (410)
++.+++|+.++++.+++|+.+ +.|.+.+.|+.+.+|. ++|++|.+.||+++.+|++|||.|+++.+...++|++++.
T Consensus 15 ~~~~~~~~~~l~~~~r~~~~~-~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~ 91 (414)
T 2or0_A 15 ENLYFQGMGRVLDRIEVVAEE-IRGQAVQSEADCRLTD--AAAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGVAAL 91 (414)
T ss_dssp --------CHHHHHHHHTHHH-HHHHHHHHHHHTSCCH--HHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHH-HHHhHHHHHhcCCCCH--HHHHHHHHCCCchhcCchhhCCCCCCHHHHHHHHHHHHhh
Confidence 355566777999999999875 8888888999999999 9999999999999999999999999999999999999999
Q ss_pred ccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecC
Q 015286 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN 188 (410)
Q Consensus 109 ~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~ 188 (410)
|+++++++..|. ++...|..+|+++|+++|+| +|+.++|+++| | +|+|++++|||+|||+|.|+||
T Consensus 92 ~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~---~g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~is~ 157 (414)
T 2or0_A 92 DGASGWVTGIVG-VHPWELAFADPQVQEEIWGE---DNDTWMASPYA-P---------MGVATPVDGGYVLKGRWSFSSG 157 (414)
T ss_dssp CHHHHHHHHHHT-THHHHHTTSCHHHHHHHHSS---CTTCCEECCCS-C---------CEEEEEETTEEEEEEEEEEETT
T ss_pred ChHHHHHHHHHH-HHHHHHHhCCHHHHHHHHcc---CCCeEEEeccC-C---------CceeEEECCeEEEEeeEeccCC
Confidence 999998887775 77788899999999999999 69989999988 4 5799999999999999999999
Q ss_pred CCcCCEEEEEEEeCCCCCCC---CeEEEEEeCCCCCeeec-cccccccCCCCCceeEEeceeeeCCCCcccC--------
Q 015286 189 GPVAQTLVVYAKTDIKAGSK---GITAFIIEKGMPGFSTA-QKLDKLGMRGSDTCELVFENCFVPNENVLGQ-------- 256 (410)
Q Consensus 189 ~~~ad~~~v~a~~~~~~~~~---~~~~flV~~~~~gv~~~-~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~-------- 256 (410)
+..||+++|+++++++++.+ ++++|+||++ ||++. +.|+++|++++++++|.||||+||++++|+.
T Consensus 158 a~~Ad~~~v~a~~~~~~g~~~~~g~~~flV~~~--gv~v~~~~~~~~G~r~~~~~~v~fd~v~VP~~~~lg~~~~~~g~~ 235 (414)
T 2or0_A 158 TDHCQWAFLGAMVGDGEGGIATPSSLHVILPRT--DYQIVEDTWDVIGLRGTGSKDLIVDGAFVPGYRTLNAAKVMDGRA 235 (414)
T ss_dssp GGGCSEEEEEEEECC-----CCCSEEEEEEEGG--GCEEETTCCCBSSCGGGCCEEEEEEEEEEEGGGEEEHHHHHHSHH
T ss_pred CchhhEEEEEEEecCCCCCcccceeEEEEEEhh--hcEEecCCCccccCcccCCCcEEEccEEecHHHeeccccccccCC
Confidence 99999999999987433434 8899999997 89999 8999999999999999999999999999975
Q ss_pred CC----chHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 015286 257 EG----KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQF-GRPLGEFQFIQGKTADMYTALQSSRSYVYSV 331 (410)
Q Consensus 257 ~~----~g~~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~-g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a 331 (410)
++ .|+.+....+...|+.+++.++|+++++++.+++|+++|++| |+|+.++|.+|++|++|.++++++|++++.+
T Consensus 236 ~g~~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~f~G~~i~~~q~vq~~la~~~~~~~aar~l~~~a 315 (414)
T 2or0_A 236 QKEAGRPEPLFNMPYSCMFPLGITAAVIGITEGALACHIAVQKDRVAITGQKIKEDPYVLSAIGESAAEINASRVSLIET 315 (414)
T ss_dssp HHHHTCSCSGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCTTSCBGGGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 234455566778999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHhh----CCCCC----hhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCC-hHHHHHHHH
Q 015286 332 ARDCD----NGKVD----PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAG-TSEIRRMII 402 (410)
Q Consensus 332 ~~~~d----~~~~~----~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G-~~~~~~~~i 402 (410)
++.++ .+.+. ...++++|+++++.+.++++.++|++||.||+++++++|+|||++...+++| ++++++..|
T Consensus 316 a~~~~~~~~~g~~~~~~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~t~~~~~~~i 395 (414)
T 2or0_A 316 ADRFYDKVDAGKEITFEERAIGRRTQIAAAWRAVRAADEIFARAGGGALHYKTPMQRFWRDAHAGLAHAVHVPGPTNHAS 395 (414)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGBTTSSHHHHHHHHHHHHTSGGGCCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHhhccCCchhHHHHHHHHHHcCCcccchHHHHHH
Confidence 99998 65442 2468899999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHhhcc
Q 015286 403 GRALLKQ 409 (410)
Q Consensus 403 ~~~~~~~ 409 (410)
++.+++.
T Consensus 396 a~~~lg~ 402 (414)
T 2or0_A 396 ALTQLGG 402 (414)
T ss_dssp HHHHTTC
T ss_pred HHHHhCC
Confidence 9998864
No 32
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}
Probab=100.00 E-value=4.3e-62 Score=482.25 Aligned_cols=369 Identities=21% Similarity=0.324 Sum_probs=322.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCC-CCHHHHHHHHHHHH
Q 015286 28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLG-LGYLYHCIAMEEIS 106 (410)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g-~~~~~~~~v~e~la 106 (410)
++..+++++.++++.+++|+. .+.+.+.+.|+.+.+|. ++|++|++.||+++.+|++|||.| .++.+++.++|+++
T Consensus 16 m~~~lt~e~~~l~~~~r~~~~-~~~~~a~~~d~~~~~~~--~~~~~l~~~Gl~~l~~P~~~GG~gl~~~~~~~~v~eel~ 92 (439)
T 3m9v_A 16 LYAPVTPAGRVLLDRLAAHLP-RIRSTAAEHDRDGTFPT--DTFDALRKDGLMGATVPAELGGLGVDRLYDVAVALLAVA 92 (439)
T ss_dssp TSSCSSHHHHHHHHHHHTTHH-HHHHHHHHHHHHTCCCH--HHHHHHHHTTGGGTTSCGGGTSCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH-HHhhhHHHHHhcCCCCH--HHHHHHHHCCCccCCCChhhCCCCCCCHHHHHHHHHHHH
Confidence 346677888899999999985 68888999999999999 999999999999999999999999 89999999999999
Q ss_pred hcccchhHHHHhhhhHHHHH--HHhcCCHHH---HhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEee
Q 015286 107 RASGSVGLSYGAHSNLCINQ--LVRHGSPAQ---KDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIING 181 (410)
Q Consensus 107 ~~~~s~~~~~~~~~~~~~~~--l~~~g~~~~---~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG 181 (410)
+.|+++++++.+|...+..+ +..+|+++| |++|++++.+|+.++|+++|||+++ ...+++ +++|||+|||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~q~~~k~~~l~~l~~g~~~~~~a~tEp~~~--~~~~~t---~~~~g~vlnG 167 (439)
T 3m9v_A 93 RADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHTA--VTTLRP---DGAGGWLLSG 167 (439)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTCCCEEEECEECTTC--CCEEEE---CSSSCEEEEE
T ss_pred hhChHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEeecCCCCC--CCceee---ccCCEEEEEe
Confidence 99999998887775444443 346799999 9999999999999999999999853 333333 2788899999
Q ss_pred eeeeecCCCcCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCccc--CCCc
Q 015286 182 NKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLG--QEGK 259 (410)
Q Consensus 182 ~k~~~s~~~~ad~~~v~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg--~~~~ 259 (410)
+|+|+||+.+||+++|+++++++.+.+++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++|+ ..+.
T Consensus 168 ~K~~~s~a~~Ad~~~v~art~~~~~~~g~~~flVp~~~pGv~i~~~~~~~G~~~~~~~~v~fddv~VP~~~~lg~~~~g~ 247 (439)
T 3m9v_A 168 RKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGA 247 (439)
T ss_dssp EEEEETTGGGCSEEEECEEECC--CCCCEEEEEEETTCTTEEECCCCCCSSCTTSCCEEEEEEEEEECGGGEEECCC--C
T ss_pred EEEeecCccccCEEEEEEEecCCCCCceeEEEEEECCCCCeEECCCcccCCcCCCCceeEEEeeeEcCHHHccCCCCCCc
Confidence 99999999999999999999866566789999999999999999999999999999999999999999999998 6666
Q ss_pred hHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-
Q 015286 260 GVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG- 338 (410)
Q Consensus 260 g~~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~- 338 (410)
++.........+|+.+++.++|+++++++.+++|++. +|+.++|.+|++|+++.++++++|++++.+++.++..
T Consensus 248 g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~~-----r~i~~~~~vq~~la~~~~~~~aar~l~~~aa~~~d~~~ 322 (439)
T 3m9v_A 248 RNDAVLAGQTVSSVSVLGVYVGVAQAAYDTAVAALER-----RPEPPQAAALTLVAEIDSRLYALRATAGSALTAADALS 322 (439)
T ss_dssp CCGGGHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHT-----CSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6544333345578899999999999999999999994 5799999999999999999999999999988776641
Q ss_pred -----------CCChhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCc-ccCChHHHHHHHHHHHh
Q 015286 339 -----------KVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYE-IGAGTSEIRRMIIGRAL 406 (410)
Q Consensus 339 -----------~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~-~~~G~~~~~~~~i~~~~ 406 (410)
......++++|+++++.+.++++.++|+|||.||+++++++|+|||++... +|+|++++++..+++.+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~ak~~a~~~a~~v~~~a~q~~Gg~G~~~~~~l~r~~Rda~~~~~~~~gt~~~~~~~i~~~~ 402 (439)
T 3m9v_A 323 ADLSGDMDERGRQMMRHFQCAKLAVNRLAPEIVSDCLSLVGGASYTAGHPLARLLRDVQAGRFMQPYAYVDAVDFLSAQA 402 (439)
T ss_dssp HCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSTTSHHHHHHHHTTGGGTSSSCCHHHHHHHHHHHH
T ss_pred cccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhcCCChHHHHHHHHHhhhhhCCCchHHHHHHHHHHH
Confidence 011234567899999999999999999999999999999999999999999 99999999999999998
Q ss_pred hcc
Q 015286 407 LKQ 409 (410)
Q Consensus 407 ~~~ 409 (410)
++.
T Consensus 403 lg~ 405 (439)
T 3m9v_A 403 LGI 405 (439)
T ss_dssp TTC
T ss_pred hCC
Confidence 864
No 33
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A
Probab=100.00 E-value=8.1e-62 Score=474.04 Aligned_cols=353 Identities=18% Similarity=0.234 Sum_probs=321.1
Q ss_pred HHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccchhHHHH
Q 015286 38 QFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYG 117 (410)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~~s~~~~~~ 117 (410)
++++.+++|+. .+.|.+.+.|+.+.+|. ++|++|.+.||+++.+|++|||.|+++.+...++|+|++.|+++++++.
T Consensus 11 ~l~~~~~~~~~-~~~~~~~~~d~~~~~p~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~ 87 (394)
T 2rfq_A 11 EVMQRLDALLP-TLRERAQETEDLRRIPD--DSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSS 87 (394)
T ss_dssp HHHHHHHHHHH-HHHHTHHHHHHHTSCCH--HHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHhHHHHHhcCCCCH--HHHHHHHHCCCceecCchhhCCCCCCHHHHHHHHHHHHhhChhHHHHHH
Confidence 68999999986 58888888999999999 9999999999999999999999999999999999999999999998877
Q ss_pred hhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCCCcCCEEEE
Q 015286 118 AHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVV 197 (410)
Q Consensus 118 ~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~~~ad~~~v 197 (410)
.|. ++...+..+|+++|+++|++ +|+.+++++++ | +|+|++++|||+|||+|.|+||+.+||+++|
T Consensus 88 ~~~-~~~~~l~~~g~~~q~~~~l~---~g~~~~~~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v 153 (394)
T 2rfq_A 88 IIG-VHNWHLALFSQQAQEDVWGN---DTDVRISSSYA-P---------MGAGQVVDGGYTVNGAWAWSSGCDHASWAVL 153 (394)
T ss_dssp HHH-HHHHHHTTSCHHHHHHHHSS---CTTCCEEEECS-C---------SEEEEEETTEEEEEEEEEEETTGGGCSEEEE
T ss_pred HHH-HHHHHHHhCCHHHHHHHhCC---CCCeEEEeccC-C---------CceEEEeCCeEEEeeeEeccCCCcccceEEE
Confidence 775 77788889999999999999 68889999987 4 4799999999999999999999999999999
Q ss_pred EEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccC--------CC----chHHHHH
Q 015286 198 YAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ--------EG----KGVYVMM 265 (410)
Q Consensus 198 ~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~--------~~----~g~~~~~ 265 (410)
+++++++++.+++++|+||++ ||++.+.|+++|++++++++|.||||+||++++|+. ++ .++.+..
T Consensus 154 ~a~~~~~g~~~~~~~flV~~~--gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~~~g~~~g~~~~~g~~~~~ 231 (394)
T 2rfq_A 154 GGPVIKDGRPVDFVSFLIPRE--DYRIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGLERNTAPVYKM 231 (394)
T ss_dssp EEEEEETTEEEEEEEEEEEGG--GCEEECCCCBSSCGGGCCEEEEEEEEEEEGGGEEEHHHHHTTCCGGGTTCCCGGGGS
T ss_pred eeeecCCCCCCceeEEEEEhh--hcEEeCCccccccccCCCCceEEcceEcChHHhcccccccccCCCCcccCCCccccc
Confidence 999843222347899999997 899999999999999999999999999999999975 22 2344555
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh----CC
Q 015286 266 SGLDLERLVLAAGPLGIMQACLDVVLPYVRQRE---QFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCD----NG 338 (410)
Q Consensus 266 ~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~---~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d----~~ 338 (410)
..+...|+.+++.++|+++++++.+++|+++|+ +||+||+++|.+|++|++|.++++++|++++.+++.++ .+
T Consensus 232 ~~~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~~~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~~~~g 311 (394)
T 2rfq_A 232 PWGTIHPTTISAPIVGMAYGAYDAHVEHQGKRVRAAFAGEKAKDDPFAKVRIAEASSDIDAAWRQLSGNVADEYALLVAG 311 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 667789999999999999999999999999999 99999999999999999999999999999999999998 66
Q ss_pred CCC----hhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCC-hHHHHHHHHHHHhhcc
Q 015286 339 KVD----PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAG-TSEIRRMIIGRALLKQ 409 (410)
Q Consensus 339 ~~~----~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G-~~~~~~~~i~~~~~~~ 409 (410)
.+. ...++++|+++++.+.++++.++|+|||.||+++++++|+|||++...+++| ++++++..|++.+++.
T Consensus 312 ~~~~~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~g~~~~~~~~~i~~~llg~ 387 (394)
T 2rfq_A 312 EEVPFELRLRARRDQVRATGRAISSIDKLFESSGATALANGTPLQRFWRDAHAGRVHAANDPERAYVMYGTGEFGL 387 (394)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTCHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhhcCCcHHHHHHHHHHHHcccccCchhHHHHHHHHHhCC
Confidence 542 2367899999999999999999999999999999999999999999999999 9999999999998864
No 34
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*
Probab=100.00 E-value=3.3e-62 Score=480.48 Aligned_cols=353 Identities=19% Similarity=0.238 Sum_probs=323.5
Q ss_pred HHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccchhHHHH
Q 015286 38 QFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYG 117 (410)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~~s~~~~~~ 117 (410)
++++.+++|+. .+.+.+.+.|+.+.+|. ++|++|.+.||+++.+|++|||.|+++.+...++|+++++|+++++++.
T Consensus 39 ~l~~~~r~~~~-~~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~ 115 (422)
T 2jbr_A 39 SMLEKIQQILP-QIAKNAESAEQLRRVPD--ENIKLLKEIGLHRAFQPKVYGGLEMSLPDFANCIVTLAGACAGTAWAFS 115 (422)
T ss_dssp CHHHHHHHHHH-HHHHTHHHHHHHTSCCH--HHHHHHHHTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHhhHHHHHcCCCCH--HHHHHHHHCCchhcCCchhcCCCCCCHHHHHHHHHHHHhhCcCHHHHHH
Confidence 68999999986 58888888999999999 9999999999999999999999999999999999999999999998777
Q ss_pred hhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeeeecCCCcCCEEEE
Q 015286 118 AHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVV 197 (410)
Q Consensus 118 ~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~~~ad~~~v 197 (410)
.|. ++...+..+|+++|+++|++. |+.++|+++| | +|+|++++|||+|||+|.|+||+.+||+++|
T Consensus 116 ~~~-~~~~~l~~~g~~~q~~~~l~~---g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v 181 (422)
T 2jbr_A 116 LLC-THSHQIAMFSKQLQDEIWLKD---PDATASSSIA-P---------FGKVEEVEGGIILNGDYGWSSGCDHAEYAIV 181 (422)
T ss_dssp HHH-HHHHHHTTSCHHHHHHHHTTC---TTCCEEEECS-C---------CSEEEEETTEEEEEEEEEEETTGGGCSEEEE
T ss_pred HHH-HHHHHHHhCCHHHHHHHHccC---CCeEEEeecC-C---------CeeEEEeCCEEEEeeeEeeecCCccccEEEE
Confidence 775 777888999999999999997 8888999988 4 4689999999999999999999999999999
Q ss_pred EEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCceeEEeceeeeCCCCcccCC--------Cch-----HHHH
Q 015286 198 YAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE--------GKG-----VYVM 264 (410)
Q Consensus 198 ~a~~~~~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~--------~~g-----~~~~ 264 (410)
.++++++++.+++++|+||++ ||++.+.|+++|++++++++|.|+||+||++++||.. +.| +.+.
T Consensus 182 ~a~~~~~~g~~g~~~flV~~~--gv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~~~~~g~~~g~g~~~~~~~~~ 259 (422)
T 2jbr_A 182 GFNRFDADGNKIYSFGVIPRS--DYEIVDNWYAQAIKSSGSKMLKLVNVFIPEYRISKAKDMMEGKSAGFGLYPDSKIFY 259 (422)
T ss_dssp EEEEECTTSCEEEEEEEEEGG--GCEEECCCCBSSSGGGCCEEEEEEEEEEEGGGEEEHHHHHHTCSTTTTSCTTCSSSS
T ss_pred EEEecCCCCCceeEEEEEEcC--ceEEeCCccccCcCCCCCCcEEEeeEEecHHHeecccccccCCCCcccccCCCcccc
Confidence 999865434557899999997 8999999999999999999999999999999999864 444 5455
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh----CC
Q 015286 265 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQRE--QFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCD----NG 338 (410)
Q Consensus 265 ~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~--~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d----~~ 338 (410)
...+...|+.+++.++|+++++++.+++|+++|+ +||+|++++|.+|++|++|.++++++|++++.+++.++ .+
T Consensus 260 ~~~~~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~g 339 (422)
T 2jbr_A 260 TPYRPYFASGFSAVSLGIAERMIEAFKEKQRNRVRAYTGANVGLATPALMRIAESTHQVAAARALLEKTWEDHRIHGLNH 339 (422)
T ss_dssp SCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCBCTTTCCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6667788999999999999999999999999998 99999999999999999999999999999999999998 65
Q ss_pred CCC----hhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCcccCChH-HHHHHHHHHHhhcc
Q 015286 339 KVD----PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTS-EIRRMIIGRALLKQ 409 (410)
Q Consensus 339 ~~~----~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~-~~~~~~i~~~~~~~ 409 (410)
.+. ...++++|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|++ ++++..|++.+++.
T Consensus 340 ~~~~~~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~~~e~~~~~ia~~~lg~ 415 (422)
T 2jbr_A 340 QYPNKETLAFWRTNQAYAVKMCIEAVDRLMAAAGATSFMDNSELQRLFRDAHMTGAHAYTDYDVCAQILGRELMGM 415 (422)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGBTTCHHHHHHHHHHHHTSSTTTCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhhhcCCcHHHHHHHHHHHhcCCccchhHHHHHHHHHHhCC
Confidence 442 246889999999999999999999999999999999999999999999999999 99999999998864
No 35
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Probab=100.00 E-value=3.5e-55 Score=450.02 Aligned_cols=364 Identities=17% Similarity=0.196 Sum_probs=313.4
Q ss_pred cHHHHHHHHHHHHHHHhccCcchhhhhhcCCCCCcHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccch
Q 015286 33 DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSV 112 (410)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~~~~s~ 112 (410)
++|+.++++.+++|+.+.-.. ....+....+++ +.|+.|++.|++. .+|++|| .+..+...+.|++ +.++
T Consensus 28 ~~e~~~lr~~vr~~l~~~~~~-~~~~~~~~~~~~--~~~~~l~~~g~l~-~~p~e~G---~~~~~~~~v~e~~---~~~~ 97 (659)
T 1w07_A 28 SRHAFEVSDRIARLVASDPVF-EKSNRARLSRKE--LFKSTLRKCAHAF-KRIIELR---LNEEEAGRLRHFI---DQPA 97 (659)
T ss_dssp SHHHHHHHHHHHHHHHTCGGG-CCTTTTSSCHHH--HHHHHHHHHHHHH-HHHHHTT---CCHHHHHHHHHHH---CCCC
T ss_pred ChHHHHHHHHHHHHHhcCccc-ccCCccCCChHH--HHHHHHHHHHHHH-HhHHHhC---CCchHHHHHHHHh---ccch
Confidence 377779999999999765222 111122234555 8999999988887 4788888 4567777666665 4555
Q ss_pred hHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEe--CCeEEEe-----eeeee
Q 015286 113 GLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKMW 185 (410)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~--~~g~~ln-----G~k~~ 185 (410)
+ +..|..++...|..+|+++|+++|+|++++|+.++|+++|||++|||+.+++|+|+++ +|||+|| |+|+|
T Consensus 98 ~--~~~~~~l~~~~l~~~Gt~eqk~~~L~~i~~Ge~~~~~a~TEp~~GSd~~~l~TtA~~d~~~~g~vLntP~~~G~K~~ 175 (659)
T 1w07_A 98 Y--VDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWW 175 (659)
T ss_dssp H--HHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSGGGSEEC
T ss_pred h--hhhHHhHHHHHHHHcCCHHHHHHHhhHHhcCCEEEEEEecCCCCCCCcccceeEEEEcCCCCEEEEcCCCCCeEEEe
Confidence 4 5566446777889999999999999999999999999999999999999999999999 6889999 99999
Q ss_pred ecC-CCcCCEEEEEEEeCCCCCCCCeEEEEEeC-C------CCCeeecccccccc---CCCCCceeEEeceeeeCCCCcc
Q 015286 186 CTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEK-G------MPGFSTAQKLDKLG---MRGSDTCELVFENCFVPNENVL 254 (410)
Q Consensus 186 ~s~-~~~ad~~~v~a~~~~~~~~~~~~~flV~~-~------~~gv~~~~~~~~~G---l~~~~s~~v~f~~v~VP~~~~l 254 (410)
+|| +..||+++|+|++..+++..++++|+||. + .|||++.+.|+++| +++++++.|.|+||+||.+++|
T Consensus 176 is~~a~~Ad~~lV~Ar~~~~~~~~G~~~flVp~r~~~~~~~~pGV~v~~~~~~~G~~~~~g~~~~~v~fd~VrVP~~~lL 255 (659)
T 1w07_A 176 PGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQML 255 (659)
T ss_dssp CTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCBSSSSGGGGSCCEEEEESSEEEEGGGBC
T ss_pred ecCCCCCCCEEEEEEEECCCCCCCCeEEEEEEccccCCCCCCCCeEEecCccCccccccCCCCceEEEeccEEECHHHhc
Confidence 999 89999999999986543445789999995 5 69999999999999 9999999999999999999999
Q ss_pred cC------CCchH------HHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-------ccccchhHHHHHH
Q 015286 255 GQ------EGKGV------YVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGR-------PLGEFQFIQGKTA 315 (410)
Q Consensus 255 g~------~~~g~------~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~-------~l~~~~~v~~~la 315 (410)
+. .+.++ ......+..+|+.+++.++|+++++++.+++|++.|++||. |++++|.+|++|+
T Consensus 256 g~~~~v~~~g~~~~~~~~~~~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~e~pi~~~q~vq~rLa 335 (659)
T 1w07_A 256 MRLSKVTREGEYVPSDVPKQLVYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLF 335 (659)
T ss_dssp CSSEEECTTCCEEECSSCGGGCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSCC---CCCCBGGGSHHHHHHHH
T ss_pred CCcCccCCCCceecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCcccchhccHHHHHHHH
Confidence 85 45443 24556678999999999999999999999999999999998 8999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-------CCCC-----ChhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHh
Q 015286 316 DMYTALQSSRSYVYSVARDCD-------NGKV-----DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLR 383 (410)
Q Consensus 316 ~~~~~l~a~~~~~~~a~~~~d-------~~~~-----~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~R 383 (410)
++.+.+++++++.+.+++.++ .+.+ ....++++|+++++.+.++++.|+|+|||+||+.+++++++||
T Consensus 336 ~~~a~~~a~~~~~~~aa~~~~~~~~~~~~g~~~~~~~~~~~~a~aK~~at~~a~~~~~~a~q~~GG~G~~~~~~l~r~~r 415 (659)
T 1w07_A 336 PLLASAYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLWCSGLPELFA 415 (659)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGBGGGSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCHHHHHH
Confidence 999999999999999887663 3332 2456789999999999999999999999999999999999999
Q ss_pred hhccCcccCChHHHHHHHHHHHhhc
Q 015286 384 DAKLYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 384 d~~~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
|++...+++|++++++..+++.+++
T Consensus 416 da~~~~~~eG~~~v~~~~iar~lL~ 440 (659)
T 1w07_A 416 VYVPACTYEGDNVVLQLQVARFLMK 440 (659)
T ss_dssp HHGGGGTTTSCHHHHHHHHHHHHHH
T ss_pred hcceeEEEeCChHHHHHHHHHHHHH
Confidence 9999999999999999999999886
No 36
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*
Probab=100.00 E-value=1.2e-54 Score=435.13 Aligned_cols=328 Identities=23% Similarity=0.335 Sum_probs=295.0
Q ss_pred cHHHHHHHHHcCCCCCCC--CcCCCCCCCCHHHHHHHHHHHHhcccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhh
Q 015286 67 DVNLWKLMGNFNLHGITA--PQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI 144 (410)
Q Consensus 67 ~~~~~~~l~~~Gl~~~~~--p~~~GG~g~~~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~ 144 (410)
.+++++.+.+.||+++.+ |++|||.+...... ..++..+......+.++. .+...|..+| ++|+++|+|++.
T Consensus 88 ~~~~~~~l~e~Gl~~l~~~~p~~~Gg~~~~~~~~----~~~~~~~~~~~~p~~~t~-~~~~~L~~~g-~eqk~~~lp~l~ 161 (541)
T 3djl_A 88 WHLLMQALCTNRVHNLAWEEDARSGAFVARAARF----MLHAQVEAGSLCPITMTF-AATPLLLQML-PAPFQDWTTPLL 161 (541)
T ss_dssp HHHHHHHHHHTTTTTGGGSTTCCTTHHHHHHHHH----HHHHHHCSTTHHHHHHHH-HHHHHHHHHC-CGGGGGGHHHHT
T ss_pred HHHHHHHHHhCCcccCCCCCCCCCCcHHHHHHHH----HHHHHHHHhhhcHHHHHH-HHHHHHHHcC-HHHHHHHHHHHh
Confidence 468999999999999999 79999654444333 333333444444444555 5666788888 999999999999
Q ss_pred cCce-------------eeEEEecCCCCCCCCCCceeEEEEe-CCeEEEeeeeeeecCCCcCCEEEEEEEeCCCCCCCCe
Q 015286 145 SGEH-------------VGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGI 210 (410)
Q Consensus 145 ~g~~-------------~~~~~~tep~~Gs~~~~~~t~a~~~-~~g~~lnG~k~~~s~~~~ad~~~v~a~~~~~~~~~~~ 210 (410)
+|+. ++|+++|||++|||+..++|+|+++ +|||+|||+|+|+| +.+||+++|+++++ .++
T Consensus 162 sge~~p~~~~~~~~~g~~~~~a~TEp~~GSDl~~~~T~A~~~~~g~y~LnG~K~f~S-a~~Ad~~lVlArt~-----~Gi 235 (541)
T 3djl_A 162 SDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFS-VPQSDAHLVLAQTA-----GGL 235 (541)
T ss_dssp CSCCCCCSSCGGGSSSCCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEEEE-CTTSSEEEEEEEET-----TEE
T ss_pred CCCcccccccccccccceeEEEeccCCcCCCcccceeEEEEcCCCeEEEEEEEEeec-ccccCEEEEEEEEC-----Cce
Confidence 9998 7899999999999999999999999 78899999999999 89999999999985 489
Q ss_pred EEEEEeCCCC-----CeeeccccccccCCCCCceeEEeceeeeCCCCcccCCCchHHHHHhhhcHHHHHHHHHHHHHHHH
Q 015286 211 TAFIIEKGMP-----GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQA 285 (410)
Q Consensus 211 ~~flV~~~~~-----gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~~lg~~~~g~~~~~~~~~~~rl~~aa~~~G~a~~ 285 (410)
++|+||++.| ||++.+.|+++|++++++++|.|+||+ ++++|.++.|+.++...+...|+.+++.++|++++
T Consensus 236 s~flVp~~~p~~~~~Gv~i~~~~~~~G~rgt~s~~v~fddv~---~~llG~~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~ 312 (541)
T 3djl_A 236 SCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDAI---GWLLGLEGEGIRLILKMGGMTRFDCALGSHAMMRR 312 (541)
T ss_dssp EEEEEESBCTTSCBCSEEEEEECCCSSCTTSCEEEEEEEEEE---EEEESSTTCHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCCcCCeEEeeccccCCCcCCceeEEEEccce---eeeeecCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988 999999999999999999999999996 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC------hhhhhHHHHHHHHHHHHH
Q 015286 286 CLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVD------PKDCAGVILCAAERATQV 359 (410)
Q Consensus 286 al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~------~~~~~~ak~~~~~~a~~~ 359 (410)
+++.+++|+++|++||+|++++|.+|++|+++.+++++++++++.+++.++.+... ....+++|+++++.+.++
T Consensus 313 al~~a~~ya~~R~~fG~~i~~~p~vq~~La~~~~~~eaaral~~~aa~~~d~~~~~~~~~~~~~~~~~aK~~ase~a~~~ 392 (541)
T 3djl_A 313 AFSLAIYHAHQRHVFGNPLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGMPF 392 (541)
T ss_dssp HHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCccCCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999886431 234678999999999999
Q ss_pred HHHHHHhhccccccCcchHHHHHhhhccCcccCChHHHHHHHHHHHhhcc
Q 015286 360 TLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 409 (410)
Q Consensus 360 ~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 409 (410)
++.+++++||.||+++++++|+|||++..+|++|+++|++..|+|.+++.
T Consensus 393 ~~~a~q~~Gg~G~~~e~~l~r~~Rda~~~~i~eGt~ei~~~~i~r~l~~~ 442 (541)
T 3djl_A 393 VAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQ 442 (541)
T ss_dssp HHHHHHHHGGGGGSTTSHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhCCeeecCCCcHHHHHHhhhhhheeCCcHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999998764
No 37
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Probab=100.00 E-value=4.1e-51 Score=419.13 Aligned_cols=360 Identities=17% Similarity=0.190 Sum_probs=292.8
Q ss_pred HHHHHHHHHHHHHHHhccCcchhhhhhcCCCCC------cHHHHHHHHHcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHh
Q 015286 34 DTQLQFKESVGQFARENIAPRAANIDQSNSFPQ------DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR 107 (410)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~------~~~~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~v~e~la~ 107 (410)
++..++++++++++.+. |.....+ ...+.. ..+..+.|.+. + ++|||.+ ..+. .+++++..
T Consensus 27 ~~~~~~r~~~~~~l~~~--p~~~~~~-~~~~~~~e~~~~~~~~~~~l~~~-~------~~~~~~~--~~~~-~~~~~~~~ 93 (661)
T 2ddh_A 27 PENTRRRREIENLILND--PDFQHED-YNFLTRSQRYEVAVKKSATMVKK-M------REYGISD--PEEI-MWFKNSVH 93 (661)
T ss_dssp HHHHHHHHHHHHHHHTC--GGGCCSC-GGGSCHHHHHHHHHHHHHHHHHH-H------HHTTCCC--HHHH-HHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcC--cccccCC-cCCCCHHHHHHHHHHHHHHHHHH-H------HHcCCCC--chHH-HHHHHHhc
Confidence 55668999999998765 3211100 001111 01223344443 2 6778765 3333 33666654
Q ss_pred cccchhHHHHhhhhHHHHHHHhcCCHHHHhhhchhhhcCceeeEEEecCCCCCCCCCCceeEEEEe--CCeEEEe-----
Q 015286 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN----- 180 (410)
Q Consensus 108 ~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~~~~~t~a~~~--~~g~~ln----- 180 (410)
.+ ++..+..|..+++..|..+|+++|+++|+|++.+|+.++|+++|||++|||+.+++|+|+++ +|||+||
T Consensus 94 ~~--~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~i~~Ge~~g~~a~TE~g~GSd~~~l~TtA~~d~~~~~~vLntP~~~ 171 (661)
T 2ddh_A 94 RG--HPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVT 171 (661)
T ss_dssp TT--CCCTTHHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSST
T ss_pred cc--hhhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEeeccCCcCcCcccceeEEEEcCCCCeEEEcCCCCC
Confidence 33 23334566557788899999999999999999999999999999999999999999999999 7899999
Q ss_pred eeeeeecC-CCcCCEEEEEEEeCCCCCCCCeEEEEEeC-C------CCCeeeccccccccCCCCCceeEEeceeeeCCCC
Q 015286 181 GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEK-G------MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNEN 252 (410)
Q Consensus 181 G~k~~~s~-~~~ad~~~v~a~~~~~~~~~~~~~flV~~-~------~~gv~~~~~~~~~Gl~~~~s~~v~f~~v~VP~~~ 252 (410)
|+|+|+|| +..||+++|+|++..+++..++.+|+||. + .|||++.+.|+++|++++++++|.|+||+||.++
T Consensus 172 G~K~wis~~a~~Ad~~vV~Ar~~~~~~~~G~~~FlVp~rd~~~~~~~pGV~v~~~~~k~Gl~g~~~~~v~Fd~VrVP~~~ 251 (661)
T 2ddh_A 172 SIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPREN 251 (661)
T ss_dssp TSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCCSSCTTCCCEEEEESSEEEEGGG
T ss_pred eEEEecCCCcccCCEEEEEEEEccCCCCCceEEEEEecccccCCCCCCCeEEecCcccccCCCCcceEEEeccEEECHHH
Confidence 99999999 88999999999986543445789999994 4 7999999999999999999999999999999999
Q ss_pred cccCC------Cch-----HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-------ccccchhHHHHH
Q 015286 253 VLGQE------GKG-----VYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGR-------PLGEFQFIQGKT 314 (410)
Q Consensus 253 ~lg~~------~~g-----~~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~-------~l~~~~~v~~~l 314 (410)
+|+.. +.+ +......+..+|+.+++.++|+++++++.+++|++.|.+||. ||.++|.+|++|
T Consensus 252 lLg~~~~v~~~G~~~~~~~~~~~~~~l~~~R~~iaa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~vq~rL 331 (661)
T 2ddh_A 252 MLMKYAQVKPDGTYVKPLSNKLTYGTMVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKL 331 (661)
T ss_dssp BCCSSCEECTTCCEECCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSCSSTTSCCCBGGGSHHHHHHH
T ss_pred hcCcccccCCCCceeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCCCCccccccccHHHHHHH
Confidence 99874 322 456677778999999999999999999999999999999998 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC-------CCC-----ChhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHH
Q 015286 315 ADMYTALQSSRSYVYSVARDCDN-------GKV-----DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLL 382 (410)
Q Consensus 315 a~~~~~l~a~~~~~~~a~~~~d~-------~~~-----~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~ 382 (410)
+++.+.+++++.+++.+++.++. +.+ ....++++|.++++.+.++++.|+++|||+||+.+++++++|
T Consensus 332 a~~~a~~~aar~~~~~aa~~~~~~~~~~~~g~~~~~~~~~~~aa~aK~~at~~a~~~~~~a~q~~GG~G~~~~~~l~r~~ 411 (661)
T 2ddh_A 332 FPLLATAYAFHFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRMACGGHGYSHSSGIPNIY 411 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSGGGSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCcHHHHH
Confidence 99999999999999999988863 221 234678999999999999999999999999999999999999
Q ss_pred hhhccCcccCChHHHHHHHHHHHhhc
Q 015286 383 RDAKLYEIGAGTSEIRRMIIGRALLK 408 (410)
Q Consensus 383 Rd~~~~~~~~G~~~~~~~~i~~~~~~ 408 (410)
||++...+++|++++++.++++.+++
T Consensus 412 rda~~~~~~eG~~~vl~~~iar~lL~ 437 (661)
T 2ddh_A 412 VTFTPACTFEGENTVMMLQTARFLMK 437 (661)
T ss_dssp HHHGGGGTSSSCHHHHHHHHHHHHHH
T ss_pred HhcceeeEecCchHHHHHHHHHHHHH
Confidence 99999999999999999999999876
No 38
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=5.8e-40 Score=325.11 Aligned_cols=276 Identities=12% Similarity=0.121 Sum_probs=218.4
Q ss_pred HHHHhcCC--HHHHhhhchhhhcCceeeEEEecCCCCC--------CCC-CCceeEEEEeCCeEEEeeeeeeecCCCcCC
Q 015286 125 NQLVRHGS--PAQKDKYLPKLISGEHVGALAMSEPNAG--------SDV-VGMKCKADRVDGGYIINGNKMWCTNGPVAQ 193 (410)
Q Consensus 125 ~~l~~~g~--~~~~~~~l~~l~~g~~~~~~~~tep~~G--------s~~-~~~~t~a~~~~~g~~lnG~k~~~s~~~~ad 193 (410)
.++..+|+ ++||++|||++++|+.++|+++|||+.| ||+ ..++ ++++++|||+|||+|+|+||++.||
T Consensus 118 ~~~~~~Gt~~~eqk~~~L~~l~~Ge~~~a~a~TEP~~~rs~~~~~gSD~~~~~~-~a~r~gdg~vlnG~K~~iT~a~~Ad 196 (490)
T 1u8v_A 118 EIDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLR-IVEKREDGIVVRGAKAHQTGSINSH 196 (490)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCE-EEEECSSEEEEEEEECSCTTCTTCS
T ss_pred hHHHHhCCCHHHHHHHHHHHHHhCCceeeeeeeCCCCCCcccccccCCcccceE-EEEEECCEEEEEeEEEEeeCCcccC
Confidence 35568999 9999999999999999999999999874 665 3455 8899999999999999999999999
Q ss_pred EEEEEEEeCCCC-CCCCeEEEEEeCCCCCeeecc---cccc----------ccC-CC-CCceeEEeceeeeCCCCcc--c
Q 015286 194 TLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQ---KLDK----------LGM-RG-SDTCELVFENCFVPNENVL--G 255 (410)
Q Consensus 194 ~~~v~a~~~~~~-~~~~~~~flV~~~~~gv~~~~---~~~~----------~Gl-~~-~~s~~v~f~~v~VP~~~~l--g 255 (410)
+++|+++++.++ +..++++|+||+++|||++.+ .+++ +|+ +. .++++|.||||+||++++| |
T Consensus 197 ~~iV~art~~~~~~~~~~s~flVp~d~pGv~v~~~r~~~~~~~~~~~~d~~lg~~r~~~~~~~v~FddV~VP~e~vl~~g 276 (490)
T 1u8v_A 197 EHIIMPTIAMTEADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIFLCQ 276 (490)
T ss_dssp EEEECCSSCCCGGGGGGCEEEEEETTCTTEEEEECCCTTGGGGGSTTCCGGGSSSSCCCCCEEEEEEEEEEEGGGEEEES
T ss_pred EEEEEEecCCCCCCCCeEEEEEEECCCCCEEEEecccccccccccccccCCccccccCCceEEEEECceEeCHHHccCCC
Confidence 999999986322 233578999999999999953 4443 666 64 6678899999999999998 7
Q ss_pred CCCchHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015286 256 QEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDC 335 (410)
Q Consensus 256 ~~~~g~~~~~~~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~ 335 (410)
..+.++......+...|+..+++++|.+..++..+...... + ++.++|.||++|++|.+.++++|++++++++..
T Consensus 277 ~~~~g~~~~~~~~~~~r~~~~a~~~~~~~~~lG~a~~~~~~---~--gi~~~q~vq~~laem~~~leaar~l~~~aa~~~ 351 (490)
T 1u8v_A 277 EYDFAGMMVERFAGYHRQSYGGCKVGVGDVVIGAAALAADY---N--GAQKASHVKDKLIEMTHLNETLYCCGIACSAEG 351 (490)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--TCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c--CchhcHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 77777877677777788877776666666666665543321 3 389999999999999999999999999999998
Q ss_pred hC---CC--CChhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhh-----------------ccCcccCC
Q 015286 336 DN---GK--VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDA-----------------KLYEIGAG 393 (410)
Q Consensus 336 d~---~~--~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~-----------------~~~~~~~G 393 (410)
+. +. +...+++++|+++++.+.++++.++|++||.|++ .|+++.|||. ........
T Consensus 352 d~~~~g~~~~~~~~~s~aK~~a~e~a~~v~~~a~qi~Gg~g~~--~p~er~~rd~~~~~~~~~~~~~~l~~~~~g~~~~~ 429 (490)
T 1u8v_A 352 YPTAAGNYQIDLLLANVCKQNITRFPYEIVRLAEDIAGGLMVT--MPSEADFKSETVVGRDGETIGDFCNKFFAAAPTCT 429 (490)
T ss_dssp EECTTSCEECCHHHHHHHHHHHTTHHHHHHHHHHHHHCTHHHH--CCCHHHHTCCCBCSTTSCBHHHHHHHHTCCSTTSC
T ss_pred cccccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhc--ChHHHHHhCchhccccchhHHHHHHHHhCCCCCCC
Confidence 63 32 4466789999999999999999999999999997 4555555554 44444444
Q ss_pred hHHHHHHH-HHHHhhc
Q 015286 394 TSEIRRMI-IGRALLK 408 (410)
Q Consensus 394 ~~~~~~~~-i~~~~~~ 408 (410)
+.+.++.. +++.+..
T Consensus 430 ~~dr~~~~rl~~~~~~ 445 (490)
T 1u8v_A 430 TEERMRVLRFLENICL 445 (490)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 44555543 6665543
No 39
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Probab=100.00 E-value=9.2e-40 Score=323.23 Aligned_cols=265 Identities=17% Similarity=0.214 Sum_probs=220.7
Q ss_pred CHHHHhhhchhhhcCceeeEEEecCCCCC--------CCCCCceeEE-EEeCCeEEEeeeeeeecCCCcCCEEEEEEEeC
Q 015286 132 SPAQKDKYLPKLISGEHVGALAMSEPNAG--------SDVVGMKCKA-DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 202 (410)
Q Consensus 132 ~~~~~~~~l~~l~~g~~~~~~~~tep~~G--------s~~~~~~t~a-~~~~~g~~lnG~k~~~s~~~~ad~~~v~a~~~ 202 (410)
.++||++|||++++|+.++++++|||+.| ||+. +.+++ ++++|||+|||+|+|+|| +.||+++|+++++
T Consensus 122 ~~eqk~~~L~~l~~Ge~~~a~a~TEP~~grs~~~s~gsd~~-~~~~~~~~~gdg~VlnG~K~~iT~-~~Ad~~iV~art~ 199 (481)
T 2yyk_A 122 FAENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPY-IPVGVVKQTEKGIVVRGARMTATF-PLADEVLIFPSIL 199 (481)
T ss_dssp GHHHHHHHHHHHHHHTCCEEEEECCCCCCTTC----CCCSC-SBCEEEEECSSEEEEEEEEEEEEC-CCSSEEEECCCSC
T ss_pred HHHHHHHHHHHHHcCCeEEEEeeECCCCCCCCCccccCCcc-cceEEEEEECCEEEEEeEEEEecc-ccccEEEEEEecC
Confidence 36999999999999999999999999976 5654 55665 478999999999999999 9999999999986
Q ss_pred CCC-CCCCeEEEEEeCCCCCeeec--ccccc--------ccCCC-CCceeEEeceeeeCCCCcc--cCCCchHHHH--Hh
Q 015286 203 IKA-GSKGITAFIIEKGMPGFSTA--QKLDK--------LGMRG-SDTCELVFENCFVPNENVL--GQEGKGVYVM--MS 266 (410)
Q Consensus 203 ~~~-~~~~~~~flV~~~~~gv~~~--~~~~~--------~Gl~~-~~s~~v~f~~v~VP~~~~l--g~~~~g~~~~--~~ 266 (410)
+++ +..++++|+||+++|||++. +.++. +|.+. .++++|.||||+||++++| |..+.++... ..
T Consensus 200 ~~~~~~~~~s~flVp~dtpGv~v~~r~~~~~~~s~~d~~lg~r~~~~~~~v~FddV~VP~e~vl~~G~~~~g~~~~~~~~ 279 (481)
T 2yyk_A 200 LQAGSEKYALAFALPTSTPGLHFVCREALVGGDSPFDHPLSSRVEEMDCLVIFDDVLVPWERVFILGNVELCNNAYGATG 279 (481)
T ss_dssp CCTTCGGGCEEEEEETTCTTEEEEECCCCCCCSCTTTCTTTTTCCCCEEEEEEEEEEEEGGGEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCCeEEEEEEECCCCCEEEEeccccccCCccccccccccCCCCeEEEEEccEEECHHHccCCCCccHHHHHHHHhh
Confidence 432 23458999999999999995 33432 56664 6778999999999999998 6665555444 56
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CC--CC
Q 015286 267 GLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN---GK--VD 341 (410)
Q Consensus 267 ~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~---~~--~~ 341 (410)
.+...|+..++..+|.++.++..+..++.. + +|.++|.||++|++|.++++++|++++++++..+. +. +.
T Consensus 280 ~l~~~r~~~~~~~~g~a~~~lg~a~~~~~~---~--gi~~~q~vq~~laem~~~leaar~l~~~aa~~~d~~~~G~~~~~ 354 (481)
T 2yyk_A 280 ALNHMAHQVVALKTAKTEAFLGVAALMAEG---I--GADVYGHVQEKIAEIIVYLEAMRAFWTRAEEEAKENAYGLLVPD 354 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---T--TGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECTTSCEECC
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHh---c--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCcCcc
Confidence 778899999999999999999999888764 3 39999999999999999999999999999999863 32 45
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHhhhccCc------ccCChHHHHHHHHHHHh
Q 015286 342 PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYE------IGAGTSEIRRMIIGRAL 406 (410)
Q Consensus 342 ~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~------~~~G~~~~~~~~i~~~~ 406 (410)
..+++++|+++++.+.++++.++|++||.++. .|+++.| |.+... ...|++++++..|.|.+
T Consensus 355 ~~~~s~aK~~a~e~a~~v~~~a~qi~Gg~g~~--~p~e~~~-~~~i~~~l~~~l~~~g~~~~~r~~i~rl~ 422 (481)
T 2yyk_A 355 RGALDGARNLYPRLYPRIREILEQIGASGLIT--LPSEKDF-KGPLGPFLEKFLQGAALEAKERVALFRLA 422 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSC--CCCHHHH-HSTTHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccc--CccHHHh-ChhhhHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 66899999999999999999999999998877 8888888 884322 22488999999888654
No 40
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Probab=100.00 E-value=2.3e-34 Score=284.14 Aligned_cols=237 Identities=13% Similarity=0.151 Sum_probs=186.8
Q ss_pred cCC--HHHHhhhchhhhcCceeeEEEecCCCC--------CCCCCCceeEEEEeCCeEEEeeeeeeecCCCcCCEEEEEE
Q 015286 130 HGS--PAQKDKYLPKLISGEHVGALAMSEPNA--------GSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYA 199 (410)
Q Consensus 130 ~g~--~~~~~~~l~~l~~g~~~~~~~~tep~~--------Gs~~~~~~t~a~~~~~g~~lnG~k~~~s~~~~ad~~~v~a 199 (410)
+|+ .+|+++|||++++|+.++++++|||+. |||+ .++++ .+++|||+|||+|.|+||+..||+++|++
T Consensus 127 ~~~~~~eq~~~~L~~l~~Ge~~~a~AltEP~~~rs~~~~~GSD~-~~~~~-~~~gdg~VlnG~K~~iT~a~~Ad~~lV~a 204 (515)
T 3hwc_A 127 EGRNLTQNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSP-NLRIV-EKTDDGIIVNGVKAVGTGIAFGDYMHIGC 204 (515)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCCCCEECCCCCCCCCSCTTTSCCS-BCEEE-EECSSEEEEEEEEEEEESGGGCSEEEECC
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEeeCCCCCcccccccCCCc-ceEEE-EEECCEEEEEEEEEEECCccccCEEEEEE
Confidence 555 478999999999999999999999986 4677 55543 45688999999999999999999999999
Q ss_pred EeCC-CCCCCCeEEEEEeCCCCCeeeccccccccCC----------CCCceeEEeceeeeCCCCcc--cCCCchHHHHHh
Q 015286 200 KTDI-KAGSKGITAFIIEKGMPGFSTAQKLDKLGMR----------GSDTCELVFENCFVPNENVL--GQEGKGVYVMMS 266 (410)
Q Consensus 200 ~~~~-~~~~~~~~~flV~~~~~gv~~~~~~~~~Gl~----------~~~s~~v~f~~v~VP~~~~l--g~~~~g~~~~~~ 266 (410)
++++ .++.. +++|+||.++|||++...|..+|.+ +..++.|.||||+||++++| |+++.|+.++..
T Consensus 205 ~t~~~~~~~~-~s~FlVp~d~pGv~v~~~~~~~G~~~~d~~ls~~~~~~~a~v~FddV~VP~e~vl~~Ge~g~g~~~~~~ 283 (515)
T 3hwc_A 205 LYRPGIPGEQ-VIFAAIPTNTPGVTVFCRESTVKNDPAEHPLASQGDELDSTTVFDNVFIPWEQVFHIGNPEHAKLYPQR 283 (515)
T ss_dssp CCCTTCCGGG-CEEEEEETTCTTEEEEECCCCCCSCTTTCTTTTSCCCCEEEEEEEEEEEEGGGEEEESCTTGGGTHHHH
T ss_pred EecCCCCCCe-EEEEEEECCCCCeEEeecccccCccccccccccccCCceEEEEECceEECHHHccCCCCccHHHHHHHH
Confidence 9833 22333 8999999999999998777766632 23378899999999999999 888888766533
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CC--CC
Q 015286 267 GLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN---GK--VD 341 (410)
Q Consensus 267 ~~~~~rl~~aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~---~~--~~ 341 (410)
.+...+....+..+|.+..++..+..++. .+ +|.++|.||++|++|.+.++++|++++++++..+. +. +.
T Consensus 284 ~~~~~~r~~~~~~~~~a~~~lG~A~~~~e---~~--gI~~fQ~Vq~kLAem~~~lEaaR~l~~~Aa~~~d~~~~G~~~p~ 358 (515)
T 3hwc_A 284 IFDWVHYHILIRQVLRAELIVGLAILITE---HI--GTSKLPTVSARVAKLVAFHLAMQAHLIASEETGFHTKGGRYKPN 358 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH--TCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECTTCCEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hc--CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Confidence 33333211123334444545544444332 23 38999999999999999999999999999998874 32 56
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhccccccC
Q 015286 342 PKDCAGVILCAAERATQVTLQAIQCLGGNGYVN 374 (410)
Q Consensus 342 ~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~ 374 (410)
...++++|+++++.+.++++.++|++||.+++.
T Consensus 359 ~~~as~AK~~ase~~~rv~~~a~qi~GG~~i~~ 391 (515)
T 3hwc_A 359 PLIYDFGRAHFLQNQMSVMYELLDLAGRSSLMI 391 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeC
Confidence 677999999999999999999999999999874
No 41
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134}
Probab=99.97 E-value=1.3e-29 Score=250.71 Aligned_cols=244 Identities=12% Similarity=0.043 Sum_probs=195.7
Q ss_pred HHHhhhchhhhcCceeeEEEecCCCCCCCC-----CCce-eEEEEeCCeEEEeeeeeeecCCCcCCEEEEEEEeCCCCCC
Q 015286 134 AQKDKYLPKLISGEHVGALAMSEPNAGSDV-----VGMK-CKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS 207 (410)
Q Consensus 134 ~~~~~~l~~l~~g~~~~~~~~tep~~Gs~~-----~~~~-t~a~~~~~g~~lnG~k~~~s~~~~ad~~~v~a~~~~~~~~ 207 (410)
+-..+|+..+.++++..+.++|+|....+. .++- -..++.+|||+|||.|.|+||++.||+++|++++.+..+.
T Consensus 134 ~n~~~y~~~~~~~DL~~~~a~~dPk~dRs~~~~~q~d~~l~Vve~~~dGiVVnGaK~~~T~a~~Ad~i~V~a~t~~~~~~ 213 (517)
T 4g5e_A 134 KNIVDFVNFAKKHDLNCAPQFVDPQMDRSNPDAQQRSPGLRVIEKNDKGIVVSGVKAIGTGVAFADWIHIGVFFRPGIPG 213 (517)
T ss_dssp HHHHHHHHHHHHHTCCEEEECCCCCC-----------CBCEEEEECSSEEEEEEEEEEEESGGGCSEEEECCCCCTTCCG
T ss_pred HHHHHHHHHHHhcCceeeeeeeCCCCCCCCCchhcCCCceEEEEEcCCeEEEeeEehhhcCccccCEEEEEeecCCCCCc
Confidence 445679999999999999999999743211 1111 2456678999999999999999999999999998766566
Q ss_pred CCeEEEEEeCCCCCeeeccccccccC---------CCC-CceeEEeceeeeCCCCcc--cCCCchHHHHHhhhcHHHHHH
Q 015286 208 KGITAFIIEKGMPGFSTAQKLDKLGM---------RGS-DTCELVFENCFVPNENVL--GQEGKGVYVMMSGLDLERLVL 275 (410)
Q Consensus 208 ~~~~~flV~~~~~gv~~~~~~~~~Gl---------~~~-~s~~v~f~~v~VP~~~~l--g~~~~g~~~~~~~~~~~rl~~ 275 (410)
.+...|+||.++|||++.......+. ++. ..+.|.||||+||++++| |+++.+..+....+...+...
T Consensus 214 d~~~~F~VP~dtPGv~~i~r~~~~~~~~~d~pl~~r~~e~da~vvFDdV~VP~e~Vf~~Ge~~~~~~~~~~~~~~~~~~~ 293 (517)
T 4g5e_A 214 DQIIFAATPVNTPGVTIVCRESVVKEDPIEHPLASQGDELDGMTVFDNVFIPWSHVFHLGNPEHAKLYPQRVFDWLHYHA 293 (517)
T ss_dssp GGCEEEEEETTCTTEEEEECCCCCCSCTTTCTTGGGCCCCEEEEEEEEEEEEGGGEEEESCTTHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEecCCCCeEEEecccccCCCccccccccccCCcceEEEecceeccHHHccccCChhHHHHHHHHHHHHHHHHH
Confidence 67889999999999998644433332 222 237799999999999987 888888877777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----CCChhhhhHHHH
Q 015286 276 AAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG-----KVDPKDCAGVIL 350 (410)
Q Consensus 276 aa~~~G~a~~al~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~-----~~~~~~~~~ak~ 350 (410)
++..+|.++.++..+..+++.. | +.++|+||++|++|.+.+|+++++++.++...+.. .|+...++++|+
T Consensus 294 ~~~~~~~~~~~~g~a~~~ae~~---G--i~~fq~Vq~kLaEm~~~~E~~ral~~aaa~~a~~~~~G~~~P~~~~a~~aK~ 368 (517)
T 4g5e_A 294 LIRQSVRAELMAGLAILITEHI---G--TNKIPAVQTRVAKLIGFHQAMLAHIVASEELGFHTPGGAYKPNILIYDFGRA 368 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---T--CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECTTCCEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---C--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcCcCHHHHHHHHH
Confidence 8888999999999888887643 2 88999999999999999999999999888765432 266778999999
Q ss_pred HHHHHHHHHHHHHHHhhccccccCcchHHHHHhh
Q 015286 351 CAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD 384 (410)
Q Consensus 351 ~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd 384 (410)
++++...+++++++|++||.|++- |-++-|+|
T Consensus 369 ~a~~~~~rv~~eaiqi~GG~g~~~--Pse~d~~~ 400 (517)
T 4g5e_A 369 LYLENFSQMIYELVDLSGRSALIF--ASEDQWND 400 (517)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTTCC--CCHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCCccccC--CCHHHhcC
Confidence 999999999999999999999973 33444443
No 42
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=94.28 E-value=0.38 Score=48.38 Aligned_cols=108 Identities=16% Similarity=0.133 Sum_probs=87.1
Q ss_pred cCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CC-CChhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcch
Q 015286 300 FGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN-GK-VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYA 377 (410)
Q Consensus 300 ~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~-~~-~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~ 377 (410)
+|+.+.+.|.+..+|+++.+++.++.+.+.++...+.. +. ....+..++++|+.+...++-..+.++. .++.++..
T Consensus 482 ~~~~~~~~q~~l~~~ad~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 559 (597)
T 3owa_A 482 YGKALDKEQEILVNIADIVSNLYAMESAVLRTEKAIKTTGLEKNKQKVLYTEVFCQEAFNEIEAHAKETL--IAVENGDM 559 (597)
T ss_dssp HGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCHHH
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccchH
Confidence 56789999999999999999999999999999988764 54 3456788999999999999999999988 56666777
Q ss_pred HHHHHhhhccCcccCChH-HHHHHHHHHHhhcc
Q 015286 378 TGRLLRDAKLYEIGAGTS-EIRRMIIGRALLKQ 409 (410)
Q Consensus 378 l~r~~Rd~~~~~~~~G~~-~~~~~~i~~~~~~~ 409 (410)
+...+..++-+.-+...| .-.+..|++.++..
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 592 (597)
T 3owa_A 560 LRMMLSSLRKLTRHTPLNVIPKKREIAAKILED 592 (597)
T ss_dssp HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Confidence 777777777666665555 44567888888754
No 43
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=75.58 E-value=36 Score=34.02 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=55.5
Q ss_pred cCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-hhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 015286 300 FGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVD-PKDCAGVILCAAERATQVTLQAIQCLG 368 (410)
Q Consensus 300 ~g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~-~~~~~~ak~~~~~~a~~~~~~~~~~~G 368 (410)
.|..+.+.|.+..+|+++...+.++.+.+.++.+.++.+.+. ..+..+++.++.+...++-..+.++.-
T Consensus 506 ~~~~~~~~~~~~~rl~d~~~~~y~~~~~l~r~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 575 (607)
T 2uxw_A 506 HKKGIVNEQFLLQRLADGAIDLYAMVVVLSRASRSLSEGHPTAQHEKMLCDTWCIEAAARIREGMAALQS 575 (607)
T ss_dssp HGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467888899999999999999999999998988777666543 345788999998888888777777443
No 44
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}
Probab=73.11 E-value=76 Score=31.36 Aligned_cols=101 Identities=18% Similarity=0.130 Sum_probs=71.8
Q ss_pred CCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHH
Q 015286 301 GRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGR 380 (410)
Q Consensus 301 g~~l~~~~~v~~~la~~~~~l~a~~~~~~~a~~~~d~~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r 380 (410)
|+.+.+.|.+-.+++++.+.+..+++.+.++... .+. +..++++++.+...++...+.+++ .++.++.|...
T Consensus 469 ~~~l~~~q~~l~~lad~~~~~~~~~~~l~r~~~~--~~~----~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 540 (577)
T 2z1q_A 469 GQGVEEEQEVLGAVADILIDAYAAESALLRARRL--GGL----APVLARIYLAQALDRAQAGALSVL--PRLVEGDEARV 540 (577)
T ss_dssp GGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHH--CTT----HHHHHHHHHHHHHHHHHHHHHHHG--GGTCCTTTTHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCc----HHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCCchhH
Confidence 4566677889999999999999999998888765 221 778899999999888888877766 34445544333
Q ss_pred HHhhhccCcc-cCChHHHHHHHHHHHhhcc
Q 015286 381 LLRDAKLYEI-GAGTSEIRRMIIGRALLKQ 409 (410)
Q Consensus 381 ~~Rd~~~~~~-~~G~~~~~~~~i~~~~~~~ 409 (410)
.....+.+.. ...+++-+...|++.+++.
T Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~ 570 (577)
T 2z1q_A 541 VYSAARRLTKREPGDLVALRRQAAEAVLEA 570 (577)
T ss_dssp HHHHHHHHTCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHhc
Confidence 3333332233 3456677888999988764
Done!