Query 015287
Match_columns 410
No_of_seqs 251 out of 1746
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:53:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015287.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015287hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02477 glutamate dehydrogena 100.0 8E-134 2E-138 1025.1 49.7 410 1-410 1-410 (410)
2 COG0334 GdhA Glutamate dehydro 100.0 2E-131 4E-136 991.5 45.4 408 2-409 2-410 (411)
3 PRK14030 glutamate dehydrogena 100.0 1E-129 2E-134 998.5 48.2 408 2-409 19-444 (445)
4 PRK09414 glutamate dehydrogena 100.0 5E-126 1E-130 974.9 47.3 408 2-409 23-444 (445)
5 PRK14031 glutamate dehydrogena 100.0 4E-122 9E-127 943.4 46.6 407 3-409 20-443 (444)
6 PTZ00079 NADP-specific glutama 100.0 2E-121 4E-126 936.7 47.5 387 23-409 54-453 (454)
7 KOG2250 Glutamate/leucine/phen 100.0 4E-105 9E-110 805.5 33.7 387 23-409 66-483 (514)
8 PTZ00324 glutamate dehydrogena 100.0 5.6E-84 1.2E-88 703.2 40.4 366 18-398 459-912 (1002)
9 cd05313 NAD_bind_2_Glu_DH NAD( 100.0 1.4E-73 3.1E-78 549.1 27.1 241 169-409 1-254 (254)
10 PF00208 ELFV_dehydrog: Glutam 100.0 1.2E-65 2.6E-70 493.7 19.5 233 176-408 1-244 (244)
11 cd01076 NAD_bind_1_Glu_DH NAD( 100.0 4E-62 8.6E-67 464.9 25.5 226 176-401 1-226 (227)
12 cd05211 NAD_bind_Glu_Leu_Phe_V 100.0 3.2E-61 6.9E-66 455.7 23.7 217 184-401 1-217 (217)
13 PF02812 ELFV_dehydrog_N: Glu/ 100.0 2.4E-48 5.2E-53 340.2 14.5 130 31-160 1-130 (131)
14 cd01075 NAD_bind_Leu_Phe_Val_D 100.0 5.1E-44 1.1E-48 334.5 23.0 195 182-401 2-199 (200)
15 smart00839 ELFV_dehydrog Gluta 100.0 1.1E-30 2.4E-35 219.7 10.0 100 282-384 3-102 (102)
16 COG2902 NAD-specific glutamate 100.0 1.2E-27 2.7E-32 263.9 23.7 338 18-379 759-1195(1592)
17 PF05088 Bac_GDH: Bacterial NA 100.0 1.3E-26 2.7E-31 264.9 26.4 370 19-408 698-1168(1528)
18 PRK08374 homoserine dehydrogen 99.3 1.8E-12 3.8E-17 130.7 7.2 171 207-386 3-205 (336)
19 PRK06392 homoserine dehydrogen 99.2 2.1E-11 4.6E-16 122.4 9.4 83 207-291 1-91 (326)
20 PRK06270 homoserine dehydrogen 98.9 1.1E-08 2.3E-13 103.5 11.8 177 207-386 3-209 (341)
21 cd05191 NAD_bind_amino_acid_DH 98.7 1.1E-07 2.4E-12 77.2 10.0 84 184-311 1-86 (86)
22 PLN02700 homoserine dehydrogen 98.4 1.3E-06 2.8E-11 89.4 8.8 61 206-266 3-79 (377)
23 PRK06813 homoserine dehydrogen 98.3 1.7E-06 3.7E-11 87.8 7.8 175 207-386 3-206 (346)
24 COG0460 ThrA Homoserine dehydr 98.1 1.4E-05 3E-10 80.4 9.6 170 205-386 2-197 (333)
25 PF00670 AdoHcyase_NAD: S-aden 97.9 0.0001 2.3E-09 67.1 9.7 120 185-329 5-127 (162)
26 cd01065 NAD_bind_Shikimate_DH 97.8 0.00071 1.5E-08 59.7 13.9 129 192-333 5-138 (155)
27 PRK09436 thrA bifunctional asp 97.7 0.00011 2.4E-09 82.5 8.5 180 199-386 458-665 (819)
28 TIGR02853 spore_dpaA dipicolin 97.6 0.00048 1E-08 68.3 11.7 126 182-331 130-259 (287)
29 PRK09599 6-phosphogluconate de 97.5 0.0025 5.5E-08 63.2 14.1 168 207-395 1-210 (301)
30 PRK09466 metL bifunctional asp 97.4 0.00026 5.7E-09 79.3 7.4 177 203-386 455-659 (810)
31 PRK08306 dipicolinate synthase 97.4 0.0012 2.6E-08 65.7 10.8 126 182-331 131-260 (296)
32 PRK15438 erythronate-4-phospha 97.3 0.0068 1.5E-07 62.5 15.0 130 184-337 94-236 (378)
33 PTZ00075 Adenosylhomocysteinas 97.3 0.0011 2.4E-08 69.9 9.2 107 187-313 234-343 (476)
34 COG0373 HemA Glutamyl-tRNA red 97.2 0.013 2.8E-07 60.9 16.4 184 187-404 159-358 (414)
35 cd05311 NAD_bind_2_malic_enz N 97.2 0.0035 7.5E-08 60.0 11.2 136 185-328 4-144 (226)
36 PRK05476 S-adenosyl-L-homocyst 97.1 0.0016 3.5E-08 67.9 8.5 99 182-303 191-290 (425)
37 COG0281 SfcA Malic enzyme [Ene 97.1 0.0039 8.4E-08 64.4 10.8 125 182-319 175-306 (432)
38 PF03446 NAD_binding_2: NAD bi 97.0 0.0021 4.6E-08 58.0 7.6 106 207-332 2-117 (163)
39 PRK12861 malic enzyme; Reviewe 97.0 0.01 2.2E-07 66.1 14.0 179 118-328 119-305 (764)
40 PF02826 2-Hacid_dh_C: D-isome 97.0 0.004 8.7E-08 57.1 9.3 109 201-329 31-147 (178)
41 PRK00257 erythronate-4-phospha 97.0 0.0035 7.5E-08 64.7 9.8 54 184-238 94-147 (381)
42 PRK13243 glyoxylate reductase; 97.0 0.0082 1.8E-07 60.7 11.8 155 201-377 145-311 (333)
43 cd01080 NAD_bind_m-THF_DH_Cycl 96.9 0.0077 1.7E-07 55.2 10.5 96 180-314 22-119 (168)
44 PRK07232 bifunctional malic en 96.9 0.012 2.5E-07 65.6 13.6 120 182-313 161-286 (752)
45 cd00401 AdoHcyase S-adenosyl-L 96.9 0.003 6.4E-08 65.8 8.4 102 183-307 182-286 (413)
46 PRK08410 2-hydroxyacid dehydro 96.8 0.017 3.8E-07 57.8 12.7 110 202-335 141-258 (311)
47 PRK14175 bifunctional 5,10-met 96.8 0.013 2.8E-07 58.2 11.5 94 182-314 138-233 (286)
48 PF01488 Shikimate_DH: Shikima 96.8 0.0039 8.5E-08 54.7 7.0 103 202-318 8-117 (135)
49 COG0111 SerA Phosphoglycerate 96.8 0.017 3.8E-07 58.3 12.4 37 201-238 137-173 (324)
50 PF03447 NAD_binding_3: Homose 96.8 0.00077 1.7E-08 57.3 2.3 90 213-342 1-95 (117)
51 cd05312 NAD_bind_1_malic_enz N 96.8 0.0093 2E-07 58.9 10.1 122 184-313 3-142 (279)
52 PRK13529 malate dehydrogenase; 96.8 0.053 1.1E-06 58.3 16.4 183 112-313 218-419 (563)
53 PRK09310 aroDE bifunctional 3- 96.7 0.025 5.5E-07 60.0 13.6 154 184-376 314-472 (477)
54 PLN02494 adenosylhomocysteinas 96.7 0.015 3.3E-07 61.4 11.6 114 183-319 234-351 (477)
55 PRK06932 glycerate dehydrogena 96.7 0.048 1E-06 54.8 14.6 108 203-335 144-260 (314)
56 PLN03129 NADP-dependent malic 96.7 0.048 1E-06 58.9 15.2 178 112-313 243-438 (581)
57 PLN03139 formate dehydrogenase 96.6 0.02 4.4E-07 59.2 12.0 108 202-329 195-311 (386)
58 PRK12862 malic enzyme; Reviewe 96.6 0.0093 2E-07 66.6 9.4 120 182-313 169-294 (763)
59 PRK15409 bifunctional glyoxyla 96.5 0.024 5.3E-07 57.2 11.5 108 201-329 140-256 (323)
60 PRK07574 formate dehydrogenase 96.5 0.024 5.2E-07 58.6 11.6 157 202-378 188-357 (385)
61 cd00762 NAD_bind_malic_enz NAD 96.5 0.014 3E-07 56.9 9.2 121 184-313 3-143 (254)
62 PLN02928 oxidoreductase family 96.5 0.027 5.8E-07 57.4 11.7 124 202-335 155-289 (347)
63 TIGR00936 ahcY adenosylhomocys 96.5 0.0082 1.8E-07 62.4 7.9 96 184-302 176-272 (406)
64 PF03807 F420_oxidored: NADP o 96.5 0.0054 1.2E-07 49.9 5.2 88 208-312 1-95 (96)
65 PRK00676 hemA glutamyl-tRNA re 96.4 0.052 1.1E-06 55.1 12.9 138 140-314 121-264 (338)
66 TIGR00872 gnd_rel 6-phosphoglu 96.3 0.015 3.2E-07 57.7 8.6 168 207-394 1-207 (298)
67 PRK06487 glycerate dehydrogena 96.3 0.084 1.8E-06 53.1 14.0 101 203-329 145-253 (317)
68 PF01113 DapB_N: Dihydrodipico 96.3 0.002 4.4E-08 55.8 1.9 104 207-325 1-111 (124)
69 PRK13302 putative L-aspartate 96.3 0.014 3.1E-07 57.3 8.1 112 204-332 4-122 (271)
70 PRK00045 hemA glutamyl-tRNA re 96.3 0.19 4.1E-06 52.4 16.8 99 203-318 179-288 (423)
71 PRK00048 dihydrodipicolinate r 96.3 0.015 3.2E-07 56.7 8.0 109 207-336 2-119 (257)
72 COG0057 GapA Glyceraldehyde-3- 96.2 0.025 5.3E-07 57.0 9.4 32 207-238 2-35 (335)
73 PTZ00142 6-phosphogluconate de 96.2 0.011 2.5E-07 62.5 7.4 172 207-395 2-218 (470)
74 PRK06436 glycerate dehydrogena 96.2 0.019 4E-07 57.5 8.5 104 202-329 118-229 (303)
75 TIGR00507 aroE shikimate 5-deh 96.2 0.13 2.8E-06 50.2 14.2 130 185-332 100-235 (270)
76 PRK14192 bifunctional 5,10-met 96.2 0.032 6.9E-07 55.4 9.8 52 182-238 139-191 (283)
77 TIGR01035 hemA glutamyl-tRNA r 96.1 0.26 5.6E-06 51.4 16.8 99 203-319 177-286 (417)
78 PRK13304 L-aspartate dehydroge 96.1 0.013 2.9E-07 57.2 6.8 107 207-331 2-117 (265)
79 PRK13581 D-3-phosphoglycerate 96.1 0.061 1.3E-06 57.8 12.1 108 201-329 135-250 (526)
80 TIGR01505 tartro_sem_red 2-hyd 96.1 0.074 1.6E-06 52.3 11.8 170 208-396 1-205 (291)
81 PF03949 Malic_M: Malic enzyme 96.0 0.017 3.7E-07 56.4 7.0 123 185-313 4-143 (255)
82 PRK06349 homoserine dehydrogen 96.0 0.023 5E-07 59.4 8.3 158 206-386 3-188 (426)
83 cd05213 NAD_bind_Glutamyl_tRNA 95.9 0.056 1.2E-06 54.1 10.3 108 193-318 166-281 (311)
84 PRK00258 aroE shikimate 5-dehy 95.9 0.18 3.9E-06 49.5 13.7 129 185-331 105-241 (278)
85 PTZ00317 NADP-dependent malic 95.9 0.23 5E-06 53.5 15.1 182 113-315 221-419 (559)
86 PRK11064 wecC UDP-N-acetyl-D-m 95.8 0.27 5.9E-06 51.2 15.3 32 207-239 4-35 (415)
87 COG0499 SAM1 S-adenosylhomocys 95.8 0.03 6.5E-07 57.0 7.8 105 181-308 187-292 (420)
88 TIGR00873 gnd 6-phosphoglucona 95.8 0.022 4.8E-07 60.3 7.2 169 209-395 2-215 (467)
89 cd01078 NAD_bind_H4MPT_DH NADP 95.7 0.041 8.9E-07 50.8 7.9 124 184-319 6-138 (194)
90 COG5322 Predicted dehydrogenas 95.7 0.19 4.1E-06 49.5 12.6 133 183-333 144-281 (351)
91 PRK11790 D-3-phosphoglycerate 95.7 0.2 4.3E-06 52.2 13.7 104 202-329 147-259 (409)
92 cd05212 NAD_bind_m-THF_DH_Cycl 95.7 0.15 3.3E-06 45.3 11.1 53 182-239 8-61 (140)
93 TIGR01532 E4PD_g-proteo D-eryt 95.7 0.12 2.6E-06 52.3 11.6 32 208-239 1-36 (325)
94 TIGR01327 PGDH D-3-phosphoglyc 95.6 0.15 3.3E-06 54.7 12.9 156 201-378 133-301 (525)
95 PRK15469 ghrA bifunctional gly 95.5 0.042 9E-07 55.2 7.6 107 202-329 132-246 (312)
96 PRK15461 NADH-dependent gamma- 95.4 0.066 1.4E-06 53.1 8.7 169 207-395 2-206 (296)
97 PRK12549 shikimate 5-dehydroge 95.4 0.27 5.8E-06 48.7 12.9 132 185-332 110-248 (284)
98 PF10727 Rossmann-like: Rossma 95.4 0.01 2.2E-07 52.0 2.5 106 206-330 10-122 (127)
99 PF00044 Gp_dh_N: Glyceraldehy 95.4 0.08 1.7E-06 47.8 8.3 33 207-239 1-34 (151)
100 PRK12490 6-phosphogluconate de 95.4 0.059 1.3E-06 53.4 8.3 170 207-395 1-209 (299)
101 PRK13940 glutamyl-tRNA reducta 95.4 0.87 1.9E-05 47.6 17.2 150 140-319 127-282 (414)
102 COG1052 LdhA Lactate dehydroge 95.3 0.19 4.2E-06 50.8 11.7 108 201-329 141-256 (324)
103 PLN02350 phosphogluconate dehy 95.3 0.046 1E-06 58.3 7.5 174 207-394 7-223 (493)
104 PRK10792 bifunctional 5,10-met 95.3 0.057 1.2E-06 53.6 7.6 53 182-239 139-192 (285)
105 PLN00203 glutamyl-tRNA reducta 95.3 0.74 1.6E-05 49.5 16.4 112 194-319 253-378 (519)
106 PRK14189 bifunctional 5,10-met 95.2 0.06 1.3E-06 53.5 7.6 53 181-238 137-190 (285)
107 PRK13535 erythrose 4-phosphate 95.2 0.24 5.1E-06 50.4 11.9 32 207-238 2-37 (336)
108 PRK14176 bifunctional 5,10-met 95.2 0.064 1.4E-06 53.3 7.6 53 182-239 144-197 (287)
109 PRK14177 bifunctional 5,10-met 95.2 0.12 2.6E-06 51.3 9.5 93 182-312 139-233 (284)
110 PRK14194 bifunctional 5,10-met 95.2 0.056 1.2E-06 54.1 7.2 53 182-239 139-192 (301)
111 PRK09424 pntA NAD(P) transhydr 95.1 0.08 1.7E-06 56.7 8.5 35 204-239 163-197 (509)
112 PF02882 THF_DHG_CYH_C: Tetrah 95.1 0.075 1.6E-06 48.4 7.1 54 181-239 15-69 (160)
113 TIGR01546 GAPDH-II_archae glyc 95.0 0.05 1.1E-06 55.2 6.5 90 209-310 1-106 (333)
114 PLN02272 glyceraldehyde-3-phos 95.0 0.32 7E-06 50.8 12.4 33 207-239 86-119 (421)
115 PRK06476 pyrroline-5-carboxyla 94.9 0.33 7.2E-06 46.8 11.7 171 207-396 1-194 (258)
116 PRK14172 bifunctional 5,10-met 94.9 0.16 3.5E-06 50.3 9.5 83 182-301 138-222 (278)
117 COG1748 LYS9 Saccharopine dehy 94.9 0.073 1.6E-06 55.1 7.3 126 207-349 2-137 (389)
118 PRK14191 bifunctional 5,10-met 94.9 0.1 2.2E-06 51.8 8.0 53 181-238 136-189 (285)
119 PRK13301 putative L-aspartate 94.8 0.066 1.4E-06 52.6 6.5 107 207-332 3-120 (267)
120 PRK15425 gapA glyceraldehyde-3 94.8 0.37 8.1E-06 48.9 12.1 32 207-238 3-35 (331)
121 PF03721 UDPG_MGDP_dh_N: UDP-g 94.8 0.094 2E-06 48.7 7.2 120 207-336 1-155 (185)
122 PRK08223 hypothetical protein; 94.8 0.026 5.6E-07 56.1 3.5 36 204-239 25-60 (287)
123 PRK08328 hypothetical protein; 94.8 0.027 5.9E-07 54.0 3.6 119 204-331 25-147 (231)
124 PLN02520 bifunctional 3-dehydr 94.7 0.47 1E-05 51.1 13.3 132 184-331 351-495 (529)
125 PRK15057 UDP-glucose 6-dehydro 94.7 0.69 1.5E-05 47.9 14.0 178 207-397 1-234 (388)
126 COG1023 Gnd Predicted 6-phosph 94.7 0.11 2.3E-06 50.5 7.4 168 207-394 1-208 (300)
127 PRK14179 bifunctional 5,10-met 94.7 0.1 2.2E-06 51.9 7.5 52 182-238 138-190 (284)
128 TIGR01534 GAPDH-I glyceraldehy 94.7 0.4 8.7E-06 48.6 11.9 31 208-238 1-34 (327)
129 TIGR01809 Shik-DH-AROM shikima 94.7 0.51 1.1E-05 46.6 12.4 130 185-331 106-251 (282)
130 PRK11559 garR tartronate semia 94.7 0.17 3.8E-06 49.7 9.1 169 207-395 3-207 (296)
131 PRK14187 bifunctional 5,10-met 94.6 0.16 3.5E-06 50.7 8.8 83 182-301 140-224 (294)
132 TIGR02356 adenyl_thiF thiazole 94.6 0.094 2E-06 49.2 6.8 37 203-239 18-54 (202)
133 PLN02358 glyceraldehyde-3-phos 94.6 0.4 8.8E-06 48.8 11.8 34 207-240 6-40 (338)
134 PRK14188 bifunctional 5,10-met 94.6 0.13 2.8E-06 51.4 8.0 52 182-238 138-190 (296)
135 PLN02516 methylenetetrahydrofo 94.6 0.23 4.9E-06 49.8 9.7 54 181-239 146-200 (299)
136 COG0677 WecC UDP-N-acetyl-D-ma 94.6 0.29 6.3E-06 50.6 10.6 118 207-334 10-155 (436)
137 smart00846 Gp_dh_N Glyceraldeh 94.5 0.67 1.5E-05 41.6 11.7 32 207-238 1-33 (149)
138 PRK14166 bifunctional 5,10-met 94.5 0.19 4.1E-06 49.9 8.8 83 182-301 137-221 (282)
139 PRK07680 late competence prote 94.4 0.11 2.4E-06 50.6 7.1 111 207-334 1-119 (273)
140 TIGR00518 alaDH alanine dehydr 94.4 0.17 3.6E-06 52.1 8.6 35 204-239 165-199 (370)
141 PLN03096 glyceraldehyde-3-phos 94.3 0.45 9.8E-06 49.4 11.5 32 207-238 61-95 (395)
142 PRK03659 glutathione-regulated 94.2 0.39 8.4E-06 52.5 11.4 136 207-368 401-547 (601)
143 COG2085 Predicted dinucleotide 94.1 0.15 3.3E-06 48.4 7.0 88 207-313 2-95 (211)
144 TIGR02355 moeB molybdopterin s 94.1 0.14 3E-06 49.5 6.9 36 204-239 22-57 (240)
145 TIGR00036 dapB dihydrodipicoli 94.1 0.21 4.5E-06 49.0 8.2 98 207-318 2-105 (266)
146 PLN02616 tetrahydrofolate dehy 94.0 0.3 6.6E-06 50.0 9.4 84 181-301 210-295 (364)
147 COG0569 TrkA K+ transport syst 94.0 0.13 2.9E-06 49.1 6.5 112 207-334 1-122 (225)
148 PRK05690 molybdopterin biosynt 94.0 0.16 3.4E-06 49.2 7.1 37 203-239 29-65 (245)
149 PF13241 NAD_binding_7: Putati 94.0 0.071 1.5E-06 44.5 4.1 37 202-238 3-39 (103)
150 PRK12480 D-lactate dehydrogena 94.0 0.09 2E-06 53.2 5.5 105 202-329 142-254 (330)
151 PRK06141 ornithine cyclodeamin 93.9 0.95 2.1E-05 45.4 12.8 116 204-333 123-242 (314)
152 COG2084 MmsB 3-hydroxyisobutyr 93.9 0.22 4.7E-06 49.6 8.0 167 207-393 1-204 (286)
153 cd01079 NAD_bind_m-THF_DH NAD 93.9 0.19 4E-06 47.4 7.0 139 182-345 33-183 (197)
154 PRK07403 glyceraldehyde-3-phos 93.8 0.66 1.4E-05 47.2 11.4 32 207-238 2-36 (337)
155 PTZ00023 glyceraldehyde-3-phos 93.8 0.56 1.2E-05 47.8 10.9 32 207-238 3-35 (337)
156 PRK14180 bifunctional 5,10-met 93.8 0.33 7.1E-06 48.2 9.0 83 182-301 138-222 (282)
157 PRK12491 pyrroline-5-carboxyla 93.8 2 4.3E-05 42.2 14.6 175 207-400 3-209 (272)
158 PRK15059 tartronate semialdehy 93.8 0.29 6.4E-06 48.5 8.7 165 208-395 2-204 (292)
159 PRK14186 bifunctional 5,10-met 93.8 0.33 7.1E-06 48.6 8.9 83 182-301 138-222 (297)
160 TIGR01692 HIBADH 3-hydroxyisob 93.7 1.4 3E-05 43.3 13.4 165 211-396 1-202 (288)
161 PRK07729 glyceraldehyde-3-phos 93.7 0.82 1.8E-05 46.7 11.8 32 207-238 3-35 (343)
162 PRK13303 L-aspartate dehydroge 93.7 0.16 3.4E-06 49.7 6.6 107 207-331 2-117 (265)
163 cd00755 YgdL_like Family of ac 93.6 0.041 8.9E-07 53.0 2.3 36 204-239 9-44 (231)
164 PRK14618 NAD(P)H-dependent gly 93.5 0.49 1.1E-05 47.3 9.8 115 206-330 4-131 (328)
165 COG1712 Predicted dinucleotide 93.4 0.15 3.3E-06 49.0 5.7 79 207-302 1-81 (255)
166 PRK07688 thiamine/molybdopteri 93.3 0.28 6.1E-06 49.9 7.9 37 203-239 21-57 (339)
167 COG0345 ProC Pyrroline-5-carbo 93.3 2.1 4.5E-05 42.2 13.6 116 207-341 2-126 (266)
168 PRK14182 bifunctional 5,10-met 93.3 0.41 9E-06 47.5 8.8 83 182-301 137-221 (282)
169 PRK14183 bifunctional 5,10-met 93.3 0.29 6.3E-06 48.6 7.6 54 181-239 136-190 (281)
170 TIGR01921 DAP-DH diaminopimela 93.3 0.3 6.4E-06 49.5 7.8 34 206-239 3-37 (324)
171 PRK14167 bifunctional 5,10-met 93.3 0.5 1.1E-05 47.3 9.2 83 182-301 137-225 (297)
172 PF01408 GFO_IDH_MocA: Oxidore 93.2 0.23 4.9E-06 41.6 6.0 107 207-330 1-116 (120)
173 PF01262 AlaDh_PNT_C: Alanine 93.2 0.12 2.6E-06 46.8 4.5 34 204-238 18-51 (168)
174 PRK14169 bifunctional 5,10-met 93.2 0.33 7.1E-06 48.2 7.8 84 181-301 135-220 (282)
175 PRK07679 pyrroline-5-carboxyla 93.2 2.4 5.1E-05 41.5 13.9 100 205-323 2-111 (279)
176 PRK14178 bifunctional 5,10-met 93.1 0.29 6.2E-06 48.6 7.3 54 181-239 131-185 (279)
177 PLN02306 hydroxypyruvate reduc 93.1 0.13 2.9E-06 53.1 5.2 118 201-329 160-292 (386)
178 COG0169 AroE Shikimate 5-dehyd 93.1 2.2 4.8E-05 42.4 13.5 128 186-331 108-246 (283)
179 PF07991 IlvN: Acetohydroxy ac 93.1 0.14 3E-06 46.9 4.6 37 204-241 2-38 (165)
180 PRK08289 glyceraldehyde-3-phos 93.1 1.5 3.3E-05 46.4 12.9 37 204-240 125-166 (477)
181 PTZ00353 glycosomal glyceralde 93.0 0.99 2.2E-05 46.0 11.2 32 207-238 3-35 (342)
182 PF02737 3HCDH_N: 3-hydroxyacy 93.0 0.074 1.6E-06 49.0 2.8 31 208-239 1-31 (180)
183 PRK06719 precorrin-2 dehydroge 92.9 0.15 3.1E-06 46.2 4.5 34 202-235 9-42 (157)
184 PRK05225 ketol-acid reductoiso 92.9 1.2 2.6E-05 47.1 11.8 30 204-233 34-63 (487)
185 PRK12548 shikimate 5-dehydroge 92.9 2 4.3E-05 42.6 12.9 136 186-331 110-256 (289)
186 PLN02897 tetrahydrofolate dehy 92.9 0.58 1.3E-05 47.7 9.2 94 181-312 193-288 (345)
187 PRK14982 acyl-ACP reductase; P 92.8 0.35 7.6E-06 49.3 7.7 131 184-344 133-270 (340)
188 KOG0069 Glyoxylate/hydroxypyru 92.8 0.31 6.8E-06 49.5 7.1 101 200-320 156-263 (336)
189 PLN02819 lysine-ketoglutarate 92.7 0.21 4.6E-06 57.6 6.6 114 205-335 568-704 (1042)
190 COG1064 AdhP Zn-dependent alco 92.6 0.31 6.6E-06 49.6 6.8 34 205-238 166-199 (339)
191 PRK14185 bifunctional 5,10-met 92.6 0.73 1.6E-05 46.0 9.3 83 182-301 137-225 (293)
192 TIGR00561 pntA NAD(P) transhyd 92.6 0.96 2.1E-05 48.6 10.8 35 204-239 162-196 (511)
193 PRK14852 hypothetical protein; 92.5 0.41 8.9E-06 54.8 8.4 121 203-332 329-454 (989)
194 PRK13403 ketol-acid reductoiso 92.5 0.19 4.1E-06 50.9 5.1 32 204-235 14-45 (335)
195 PRK12749 quinate/shikimate deh 92.5 3.6 7.9E-05 40.8 14.3 135 185-332 107-254 (288)
196 PRK14851 hypothetical protein; 92.5 0.11 2.3E-06 57.6 3.6 120 204-332 41-165 (679)
197 TIGR03026 NDP-sugDHase nucleot 92.4 4.5 9.8E-05 41.9 15.5 32 207-239 1-32 (411)
198 PRK08300 acetaldehyde dehydrog 92.4 0.44 9.5E-06 47.8 7.5 115 205-334 3-132 (302)
199 PRK07877 hypothetical protein; 92.4 0.32 6.9E-06 54.3 7.1 124 204-342 105-234 (722)
200 PF02254 TrkA_N: TrkA-N domain 92.3 0.5 1.1E-05 39.4 6.8 102 209-329 1-111 (116)
201 PRK08229 2-dehydropantoate 2-r 92.2 2.6 5.6E-05 42.2 13.0 31 207-238 3-33 (341)
202 PRK14173 bifunctional 5,10-met 92.2 0.51 1.1E-05 47.0 7.7 54 181-239 134-188 (287)
203 COG1648 CysG Siroheme synthase 92.2 0.4 8.7E-06 45.6 6.7 50 202-261 8-57 (210)
204 PRK06718 precorrin-2 dehydroge 92.2 0.22 4.7E-06 46.9 4.9 84 202-300 6-89 (202)
205 PRK05479 ketol-acid reductoiso 92.2 0.2 4.4E-06 50.8 4.9 34 204-238 15-48 (330)
206 KOG2380 Prephenate dehydrogena 92.1 0.24 5.1E-06 50.4 5.2 34 205-239 51-84 (480)
207 PRK14171 bifunctional 5,10-met 92.1 0.44 9.6E-06 47.4 7.1 83 182-301 139-223 (288)
208 PLN02688 pyrroline-5-carboxyla 92.0 0.67 1.5E-05 44.7 8.2 31 207-238 1-36 (266)
209 PLN02237 glyceraldehyde-3-phos 92.0 1.5 3.4E-05 46.1 11.2 32 207-238 76-110 (442)
210 PRK14190 bifunctional 5,10-met 92.0 0.44 9.6E-06 47.4 6.9 52 182-238 138-190 (284)
211 PRK10669 putative cation:proto 91.9 0.45 9.7E-06 51.3 7.6 105 207-330 418-531 (558)
212 TIGR01915 npdG NADPH-dependent 91.9 0.35 7.6E-06 45.7 6.0 97 207-315 1-105 (219)
213 PRK08955 glyceraldehyde-3-phos 91.9 2.6 5.6E-05 42.9 12.5 32 207-238 3-35 (334)
214 KOG2018 Predicted dinucleotide 91.8 0.47 1E-05 47.7 6.9 86 204-289 72-173 (430)
215 TIGR01470 cysG_Nterm siroheme 91.8 0.23 5.1E-06 46.8 4.6 35 202-236 5-39 (205)
216 PRK06567 putative bifunctional 91.7 0.69 1.5E-05 53.2 8.8 34 204-238 381-414 (1028)
217 PRK03562 glutathione-regulated 91.6 0.94 2E-05 49.8 9.7 107 206-331 400-515 (621)
218 KOG1370 S-adenosylhomocysteine 91.6 0.44 9.6E-06 47.8 6.4 119 204-342 212-352 (434)
219 PRK05597 molybdopterin biosynt 91.6 0.52 1.1E-05 48.2 7.2 36 204-239 26-61 (355)
220 PRK07340 ornithine cyclodeamin 91.6 2.3 4.9E-05 42.5 11.6 109 204-327 123-234 (304)
221 PRK08605 D-lactate dehydrogena 91.4 0.29 6.2E-06 49.5 5.1 107 201-329 141-256 (332)
222 PRK14170 bifunctional 5,10-met 91.4 0.57 1.2E-05 46.6 7.0 93 182-312 137-231 (284)
223 PLN02858 fructose-bisphosphate 91.4 4.1 8.8E-05 48.9 15.2 170 206-395 324-532 (1378)
224 COG2344 AT-rich DNA-binding pr 91.4 0.4 8.6E-06 45.0 5.4 55 185-240 64-120 (211)
225 PRK07417 arogenate dehydrogena 91.1 0.76 1.6E-05 45.0 7.5 68 207-292 1-68 (279)
226 PRK08762 molybdopterin biosynt 91.0 0.53 1.2E-05 48.3 6.6 37 203-239 132-168 (376)
227 TIGR00465 ilvC ketol-acid redu 90.9 0.38 8.3E-06 48.4 5.4 35 204-238 1-35 (314)
228 PRK06046 alanine dehydrogenase 90.8 2.4 5.2E-05 42.7 11.0 113 205-331 128-244 (326)
229 PRK04207 glyceraldehyde-3-phos 90.7 2.3 5E-05 43.2 10.9 33 207-239 2-35 (341)
230 PLN02545 3-hydroxybutyryl-CoA 90.5 0.3 6.6E-06 48.1 4.2 32 207-239 5-36 (295)
231 PRK07878 molybdopterin biosynt 90.4 0.83 1.8E-05 47.3 7.5 36 204-239 40-75 (392)
232 PF00070 Pyr_redox: Pyridine n 90.3 1.2 2.6E-05 34.9 6.7 42 208-252 1-42 (80)
233 PF01118 Semialdhyde_dh: Semia 90.3 0.4 8.7E-06 41.0 4.2 42 208-253 1-44 (121)
234 PRK14193 bifunctional 5,10-met 90.2 1 2.3E-05 44.7 7.6 53 182-239 138-193 (284)
235 PRK07530 3-hydroxybutyryl-CoA 90.1 1.2 2.7E-05 43.7 8.1 32 207-239 5-36 (292)
236 PRK09496 trkA potassium transp 89.9 1.3 2.9E-05 45.9 8.6 121 193-329 217-345 (453)
237 TIGR02354 thiF_fam2 thiamine b 89.9 0.48 1E-05 44.5 4.8 36 204-239 19-54 (200)
238 PRK01438 murD UDP-N-acetylmura 89.9 0.55 1.2E-05 49.4 5.8 40 199-239 9-48 (480)
239 PRK05472 redox-sensing transcr 89.8 0.65 1.4E-05 43.8 5.7 53 186-239 65-119 (213)
240 PRK04690 murD UDP-N-acetylmura 89.8 0.46 1E-05 50.2 5.1 35 204-239 6-40 (468)
241 PRK05600 thiamine biosynthesis 89.8 0.54 1.2E-05 48.4 5.4 36 204-239 39-74 (370)
242 PRK14184 bifunctional 5,10-met 89.7 1.1 2.3E-05 44.7 7.2 53 182-239 137-194 (286)
243 COG0686 Ald Alanine dehydrogen 89.7 1.9 4E-05 43.6 8.8 34 204-238 166-199 (371)
244 PF00899 ThiF: ThiF family; I 89.6 0.36 7.8E-06 41.9 3.5 34 206-239 2-35 (135)
245 PRK12475 thiamine/molybdopteri 89.6 0.48 1E-05 48.2 4.8 37 203-239 21-57 (338)
246 PRK02472 murD UDP-N-acetylmura 89.5 0.58 1.3E-05 48.6 5.6 36 203-239 2-37 (447)
247 PRK08268 3-hydroxy-acyl-CoA de 89.5 0.42 9E-06 51.2 4.5 32 207-239 8-39 (507)
248 PRK06928 pyrroline-5-carboxyla 89.5 8 0.00017 37.9 13.2 113 207-337 2-125 (277)
249 KOG0068 D-3-phosphoglycerate d 89.5 0.31 6.6E-06 49.5 3.2 35 200-234 140-174 (406)
250 PRK12550 shikimate 5-dehydroge 89.3 9.3 0.0002 37.7 13.5 123 185-331 106-236 (272)
251 PF03435 Saccharop_dh: Sacchar 89.2 0.37 8.1E-06 49.2 3.7 112 209-339 1-127 (386)
252 TIGR02279 PaaC-3OHAcCoADH 3-hy 89.1 0.4 8.7E-06 51.3 4.1 32 207-239 6-37 (503)
253 PRK15116 sulfur acceptor prote 89.1 0.55 1.2E-05 46.3 4.7 36 204-239 28-63 (268)
254 PLN02712 arogenate dehydrogena 89.0 0.7 1.5E-05 51.2 5.9 38 200-238 363-400 (667)
255 COG2130 Putative NADP-dependen 88.8 1.3 2.7E-05 44.6 7.0 110 184-311 133-250 (340)
256 cd00757 ThiF_MoeB_HesA_family 88.7 0.62 1.4E-05 44.4 4.7 37 203-239 18-54 (228)
257 PRK05717 oxidoreductase; Valid 88.7 0.85 1.8E-05 43.2 5.6 36 202-238 6-42 (255)
258 PRK14174 bifunctional 5,10-met 88.7 1.2 2.7E-05 44.5 6.9 53 182-239 139-196 (295)
259 KOG0455 Homoserine dehydrogena 88.6 0.98 2.1E-05 44.2 5.9 57 205-261 2-71 (364)
260 PF01210 NAD_Gly3P_dh_N: NAD-d 88.6 1.8 3.9E-05 38.7 7.4 30 208-238 1-30 (157)
261 PRK11579 putative oxidoreducta 88.4 3 6.5E-05 42.0 9.7 102 207-331 5-119 (346)
262 PRK07819 3-hydroxybutyryl-CoA 88.4 0.46 9.9E-06 47.0 3.6 32 207-239 6-37 (286)
263 PRK14181 bifunctional 5,10-met 88.2 1.4 3.1E-05 43.8 7.0 53 182-239 133-190 (287)
264 COG1179 Dinucleotide-utilizing 88.2 0.51 1.1E-05 45.9 3.7 36 204-239 28-63 (263)
265 PRK14106 murD UDP-N-acetylmura 88.2 0.78 1.7E-05 47.7 5.5 36 203-239 2-37 (450)
266 KOG0409 Predicted dehydrogenas 88.0 1 2.2E-05 45.2 5.7 172 204-398 33-244 (327)
267 PRK08293 3-hydroxybutyryl-CoA 87.9 0.64 1.4E-05 45.7 4.4 32 207-239 4-35 (287)
268 PRK09496 trkA potassium transp 87.8 1.4 3E-05 45.8 6.9 31 207-238 1-31 (453)
269 PRK00066 ldh L-lactate dehydro 87.7 1.3 2.9E-05 44.5 6.6 34 205-239 5-40 (315)
270 KOG0022 Alcohol dehydrogenase, 87.6 0.53 1.1E-05 47.5 3.5 47 182-235 176-223 (375)
271 PLN02858 fructose-bisphosphate 87.6 2.2 4.8E-05 51.1 9.2 172 205-396 3-213 (1378)
272 PRK08618 ornithine cyclodeamin 87.5 4.9 0.00011 40.4 10.5 115 205-334 126-245 (325)
273 PRK00094 gpsA NAD(P)H-dependen 87.4 2 4.3E-05 42.4 7.5 32 207-239 2-33 (325)
274 PTZ00434 cytosolic glyceraldeh 87.4 2.5 5.5E-05 43.4 8.3 32 207-238 4-40 (361)
275 PLN02353 probable UDP-glucose 87.3 3.1 6.7E-05 44.3 9.3 32 207-239 2-35 (473)
276 PRK06153 hypothetical protein; 87.3 0.39 8.4E-06 49.7 2.4 37 203-239 173-209 (393)
277 PF13380 CoA_binding_2: CoA bi 87.2 1.7 3.6E-05 37.2 6.0 100 207-333 1-109 (116)
278 PTZ00082 L-lactate dehydrogena 87.2 0.82 1.8E-05 46.1 4.7 37 204-241 4-41 (321)
279 PRK07531 bifunctional 3-hydrox 87.2 4.8 0.0001 43.0 10.7 32 207-239 5-36 (495)
280 PRK01710 murD UDP-N-acetylmura 87.1 0.9 2E-05 47.7 5.2 35 204-239 12-46 (458)
281 PRK14620 NAD(P)H-dependent gly 87.1 1.9 4.1E-05 43.1 7.2 31 207-238 1-31 (326)
282 COG0190 FolD 5,10-methylene-te 87.1 1.6 3.4E-05 43.4 6.4 53 182-239 136-189 (283)
283 PRK14619 NAD(P)H-dependent gly 87.0 0.98 2.1E-05 44.9 5.1 34 205-239 3-36 (308)
284 PRK08507 prephenate dehydrogen 87.0 1.9 4.2E-05 42.0 7.1 31 207-238 1-33 (275)
285 PRK11880 pyrroline-5-carboxyla 87.0 2 4.4E-05 41.4 7.2 89 207-314 3-97 (267)
286 PRK14168 bifunctional 5,10-met 86.8 1.8 3.8E-05 43.4 6.7 53 182-239 141-198 (297)
287 COG0673 MviM Predicted dehydro 86.7 4.1 8.9E-05 40.3 9.4 111 205-331 2-122 (342)
288 PRK00436 argC N-acetyl-gamma-g 86.7 2 4.4E-05 43.6 7.3 96 207-314 3-102 (343)
289 PRK07066 3-hydroxybutyryl-CoA 86.5 0.71 1.5E-05 46.7 3.8 32 207-239 8-39 (321)
290 PRK04148 hypothetical protein; 86.3 1.5 3.3E-05 38.8 5.3 34 204-239 15-48 (134)
291 COG0059 IlvC Ketol-acid reduct 86.3 0.7 1.5E-05 46.4 3.5 55 204-259 16-74 (338)
292 TIGR03628 arch_S11P archaeal r 86.3 2.9 6.4E-05 36.0 6.9 66 179-244 38-112 (114)
293 PRK15182 Vi polysaccharide bio 86.2 26 0.00056 36.8 15.4 33 205-239 5-37 (425)
294 PLN02256 arogenate dehydrogena 86.2 1.6 3.4E-05 43.8 6.1 33 204-236 34-66 (304)
295 PRK07523 gluconate 5-dehydroge 86.2 1.4 2.9E-05 41.7 5.4 35 203-238 7-42 (255)
296 PRK08644 thiamine biosynthesis 86.2 1 2.2E-05 42.7 4.5 36 204-239 26-61 (212)
297 PRK14027 quinate/shikimate deh 86.1 2.2 4.8E-05 42.3 7.0 130 185-331 110-249 (283)
298 TIGR03215 ac_ald_DH_ac acetald 86.0 1.4 3E-05 43.8 5.6 33 207-239 2-35 (285)
299 PRK03369 murD UDP-N-acetylmura 85.9 1.2 2.6E-05 47.3 5.4 35 204-239 10-44 (488)
300 PTZ00431 pyrroline carboxylate 85.9 13 0.00028 36.0 12.2 105 205-335 2-116 (260)
301 PRK00141 murD UDP-N-acetylmura 85.8 1.2 2.6E-05 47.1 5.3 35 204-239 13-47 (473)
302 PRK08628 short chain dehydroge 85.7 1.3 2.9E-05 41.8 5.1 35 201-235 2-37 (258)
303 TIGR01832 kduD 2-deoxy-D-gluco 85.7 1.4 3.1E-05 41.2 5.3 34 203-236 2-36 (248)
304 PRK09607 rps11p 30S ribosomal 85.6 3.4 7.4E-05 36.6 7.1 66 179-244 45-119 (132)
305 PRK02006 murD UDP-N-acetylmura 85.6 1.2 2.7E-05 47.2 5.2 36 204-240 5-40 (498)
306 PRK06849 hypothetical protein; 85.4 1.3 2.7E-05 45.4 5.1 34 205-239 3-37 (389)
307 PRK07502 cyclohexadienyl dehyd 85.4 2.4 5.3E-05 42.0 7.0 33 206-239 6-40 (307)
308 cd01492 Aos1_SUMO Ubiquitin ac 85.3 0.99 2.1E-05 42.2 3.9 36 204-239 19-54 (197)
309 COG1250 FadB 3-hydroxyacyl-CoA 85.3 0.99 2.1E-05 45.4 4.1 33 206-239 3-35 (307)
310 cd08239 THR_DH_like L-threonin 85.2 6.1 0.00013 39.0 9.7 32 204-235 162-194 (339)
311 PLN02896 cinnamyl-alcohol dehy 85.2 1.7 3.6E-05 43.6 5.7 37 201-237 5-42 (353)
312 PRK07060 short chain dehydroge 85.0 1.7 3.7E-05 40.4 5.5 36 202-238 5-41 (245)
313 PRK07634 pyrroline-5-carboxyla 85.0 3.1 6.6E-05 39.5 7.2 101 205-323 3-111 (245)
314 cd01485 E1-1_like Ubiquitin ac 85.0 1.2 2.5E-05 41.8 4.2 36 204-239 17-52 (198)
315 PRK06300 enoyl-(acyl carrier p 85.0 1.5 3.3E-05 43.6 5.3 36 202-238 4-42 (299)
316 PRK12828 short chain dehydroge 85.0 1.5 3.3E-05 40.4 5.0 35 203-238 4-39 (239)
317 PRK12826 3-ketoacyl-(acyl-carr 85.0 1.6 3.4E-05 40.7 5.2 34 203-236 3-37 (251)
318 PRK09291 short chain dehydroge 84.9 1.4 3E-05 41.5 4.8 31 206-236 2-33 (257)
319 PRK01390 murD UDP-N-acetylmura 84.8 1.4 3E-05 46.2 5.2 35 204-239 7-41 (460)
320 PRK04308 murD UDP-N-acetylmura 84.7 1.6 3.5E-05 45.5 5.6 35 204-239 3-37 (445)
321 PRK06138 short chain dehydroge 84.5 1.7 3.7E-05 40.6 5.2 34 203-236 2-36 (252)
322 KOG0089 Methylenetetrahydrofol 84.4 1.4 3.1E-05 43.5 4.6 53 183-239 147-200 (309)
323 PTZ00117 malate dehydrogenase; 84.3 1.3 2.8E-05 44.6 4.4 35 204-239 3-38 (319)
324 PRK12938 acetyacetyl-CoA reduc 84.3 1.9 4.2E-05 40.3 5.4 35 204-238 1-36 (246)
325 cd08230 glucose_DH Glucose deh 84.2 3.2 6.9E-05 41.6 7.3 33 204-236 171-203 (355)
326 PF02558 ApbA: Ketopantoate re 84.1 2 4.4E-05 37.4 5.2 29 209-237 1-29 (151)
327 COG1063 Tdh Threonine dehydrog 84.1 3.7 8E-05 41.7 7.7 33 207-239 170-202 (350)
328 COG1004 Ugd Predicted UDP-gluc 84.0 6.7 0.00015 40.9 9.4 184 207-403 1-250 (414)
329 PRK05557 fabG 3-ketoacyl-(acyl 84.0 2.3 5E-05 39.3 5.8 36 203-238 2-38 (248)
330 cd01974 Nitrogenase_MoFe_beta 83.8 22 0.00048 37.2 13.6 36 202-237 299-334 (435)
331 PRK07231 fabG 3-ketoacyl-(acyl 83.8 2.1 4.5E-05 40.0 5.4 36 203-239 2-38 (251)
332 KOG1257 NADP+-dependent malic 83.8 14 0.00029 39.9 11.7 175 114-315 234-427 (582)
333 PRK06523 short chain dehydroge 83.8 2 4.4E-05 40.6 5.4 36 202-238 5-41 (260)
334 PLN02206 UDP-glucuronate decar 83.7 1.7 3.7E-05 45.7 5.3 37 200-236 113-150 (442)
335 TIGR01202 bchC 2-desacetyl-2-h 83.7 1.7 3.7E-05 42.8 5.0 35 204-238 143-177 (308)
336 cd01483 E1_enzyme_family Super 83.6 1.8 3.9E-05 37.8 4.6 32 208-239 1-32 (143)
337 PRK08217 fabG 3-ketoacyl-(acyl 83.5 2.1 4.5E-05 39.9 5.3 35 203-238 2-37 (253)
338 cd01491 Ube1_repeat1 Ubiquitin 83.5 3.1 6.8E-05 41.4 6.7 36 204-239 17-52 (286)
339 KOG1196 Predicted NAD-dependen 83.5 4.4 9.6E-05 40.8 7.6 118 177-314 132-257 (343)
340 PRK07774 short chain dehydroge 83.5 2.2 4.7E-05 40.0 5.4 35 203-238 3-38 (250)
341 TIGR02371 ala_DH_arch alanine 83.4 12 0.00025 37.8 10.9 115 205-335 127-246 (325)
342 PRK08339 short chain dehydroge 83.4 2.2 4.7E-05 40.9 5.5 36 202-238 4-40 (263)
343 PRK06841 short chain dehydroge 83.3 2.2 4.7E-05 40.2 5.4 35 203-238 12-47 (255)
344 PRK05786 fabG 3-ketoacyl-(acyl 83.3 2.1 4.6E-05 39.7 5.2 35 203-238 2-37 (238)
345 PRK00683 murD UDP-N-acetylmura 83.2 1.8 3.9E-05 44.9 5.1 34 205-239 2-35 (418)
346 COG0771 MurD UDP-N-acetylmuram 83.1 1.5 3.3E-05 46.3 4.6 36 204-240 5-40 (448)
347 cd05291 HicDH_like L-2-hydroxy 83.0 2.2 4.8E-05 42.5 5.5 32 207-239 1-34 (306)
348 PRK07890 short chain dehydroge 83.0 2.1 4.5E-05 40.3 5.1 34 204-238 3-37 (258)
349 PF02629 CoA_binding: CoA bind 83.0 1.3 2.8E-05 36.4 3.2 35 206-240 3-38 (96)
350 PRK06949 short chain dehydroge 83.0 2.4 5.2E-05 39.9 5.5 34 202-235 5-39 (258)
351 PRK13394 3-hydroxybutyrate deh 83.0 2.3 4.9E-05 40.1 5.3 35 203-238 4-39 (262)
352 PRK08703 short chain dehydroge 83.0 2.3 5.1E-05 39.7 5.4 36 203-239 3-39 (239)
353 PRK08291 ectoine utilization p 82.8 15 0.00032 37.1 11.4 118 205-335 131-252 (330)
354 PRK09186 flagellin modificatio 82.8 2.2 4.8E-05 40.1 5.2 32 204-235 2-34 (256)
355 PLN02586 probable cinnamyl alc 82.8 4 8.6E-05 41.3 7.4 35 204-238 182-216 (360)
356 PRK06522 2-dehydropantoate 2-r 82.7 1.9 4.2E-05 42.0 4.9 31 207-238 1-31 (304)
357 PRK12829 short chain dehydroge 82.7 2.1 4.6E-05 40.3 5.1 32 204-235 9-41 (264)
358 PRK00421 murC UDP-N-acetylmura 82.7 1.8 3.9E-05 45.4 5.0 35 204-239 5-40 (461)
359 TIGR02622 CDP_4_6_dhtase CDP-g 82.7 2.1 4.5E-05 42.9 5.2 33 204-236 2-35 (349)
360 PRK11891 aspartate carbamoyltr 82.7 61 0.0013 34.3 16.1 172 97-289 123-316 (429)
361 PRK05876 short chain dehydroge 82.7 2.3 5.1E-05 41.1 5.4 36 203-239 3-39 (275)
362 PRK06035 3-hydroxyacyl-CoA deh 82.7 1.9 4.2E-05 42.4 4.9 32 207-239 4-35 (291)
363 PRK10206 putative oxidoreducta 82.6 2.4 5.3E-05 42.9 5.7 107 207-330 2-118 (344)
364 PRK05309 30S ribosomal protein 82.4 5.3 0.00011 35.1 7.0 65 180-244 53-118 (128)
365 PRK12742 oxidoreductase; Provi 82.4 2.6 5.6E-05 39.1 5.5 33 203-235 3-36 (237)
366 PRK08416 7-alpha-hydroxysteroi 82.4 2.5 5.5E-05 40.2 5.5 37 202-238 4-41 (260)
367 PLN02240 UDP-glucose 4-epimera 82.3 2.4 5.2E-05 42.1 5.5 34 203-236 2-36 (352)
368 PRK06505 enoyl-(acyl carrier p 82.2 2.2 4.9E-05 41.2 5.1 34 204-238 5-41 (271)
369 PRK05579 bifunctional phosphop 82.2 4.6 0.0001 42.1 7.6 38 202-240 184-238 (399)
370 PRK07533 enoyl-(acyl carrier p 82.1 2.5 5.3E-05 40.4 5.3 36 203-239 7-45 (258)
371 PRK06194 hypothetical protein; 82.0 2.5 5.4E-05 40.7 5.3 35 203-238 3-38 (287)
372 smart00859 Semialdhyde_dh Semi 82.0 3.8 8.2E-05 34.7 5.9 32 208-239 1-34 (122)
373 PRK07411 hypothetical protein; 82.0 1.7 3.8E-05 44.9 4.4 36 204-239 36-71 (390)
374 PRK09260 3-hydroxybutyryl-CoA 81.9 1.9 4.2E-05 42.3 4.6 32 207-239 2-33 (288)
375 PRK08063 enoyl-(acyl carrier p 81.8 2.7 5.9E-05 39.3 5.4 35 204-238 2-37 (250)
376 PRK05867 short chain dehydroge 81.8 2.7 5.9E-05 39.6 5.5 35 203-238 6-41 (253)
377 PF03853 YjeF_N: YjeF-related 81.7 11 0.00023 34.3 9.1 47 184-234 7-57 (169)
378 PRK06125 short chain dehydroge 81.7 2.9 6.2E-05 39.6 5.5 37 202-239 3-40 (259)
379 PRK15181 Vi polysaccharide bio 81.6 2.3 5.1E-05 42.6 5.1 36 202-237 11-47 (348)
380 CHL00041 rps11 ribosomal prote 81.6 6 0.00013 34.1 6.9 65 180-244 49-114 (116)
381 PRK08213 gluconate 5-dehydroge 81.6 2.8 6.1E-05 39.7 5.4 36 202-238 8-44 (259)
382 PRK09072 short chain dehydroge 81.5 2.9 6.3E-05 39.7 5.5 35 203-238 2-37 (263)
383 PRK06079 enoyl-(acyl carrier p 81.5 2.5 5.5E-05 40.2 5.1 34 204-238 5-41 (252)
384 PRK08945 putative oxoacyl-(acy 81.3 2.5 5.5E-05 39.7 5.0 35 204-239 10-45 (247)
385 PRK06171 sorbitol-6-phosphate 81.3 2.8 6E-05 39.9 5.3 36 203-239 6-42 (266)
386 PRK06057 short chain dehydroge 81.3 2.7 5.9E-05 39.7 5.3 34 204-238 5-39 (255)
387 PRK08642 fabG 3-ketoacyl-(acyl 81.3 2.9 6.2E-05 39.1 5.3 34 204-237 3-37 (253)
388 PLN02427 UDP-apiose/xylose syn 81.2 2.6 5.6E-05 42.8 5.4 36 201-236 9-46 (386)
389 PLN02695 GDP-D-mannose-3',5'-e 81.2 2.4 5.2E-05 43.2 5.1 32 205-236 20-52 (370)
390 TIGR03632 bact_S11 30S ribosom 81.1 6.4 0.00014 33.5 6.8 65 180-244 36-101 (108)
391 PRK07236 hypothetical protein; 81.0 2.9 6.3E-05 42.5 5.6 41 204-245 4-44 (386)
392 PRK08993 2-deoxy-D-gluconate 3 80.8 2.8 6.1E-05 39.7 5.2 33 203-235 7-40 (253)
393 PRK07806 short chain dehydroge 80.8 3.5 7.5E-05 38.6 5.7 34 203-236 3-37 (248)
394 PRK07984 enoyl-(acyl carrier p 80.8 2.8 6.1E-05 40.4 5.2 34 204-238 4-40 (262)
395 PRK06124 gluconate 5-dehydroge 80.8 3.2 6.8E-05 39.2 5.5 37 202-239 7-44 (256)
396 PRK12823 benD 1,6-dihydroxycyc 80.7 2.9 6.3E-05 39.5 5.2 35 203-238 5-40 (260)
397 PRK06172 short chain dehydroge 80.7 2.9 6.3E-05 39.3 5.2 36 203-239 4-40 (253)
398 PRK08085 gluconate 5-dehydroge 80.7 3.2 6.9E-05 39.1 5.5 36 203-239 6-42 (254)
399 PRK08936 glucose-1-dehydrogena 80.7 3.6 7.8E-05 39.0 5.8 36 202-237 3-39 (261)
400 PRK06398 aldose dehydrogenase; 80.7 3.1 6.6E-05 39.7 5.4 33 203-235 3-36 (258)
401 PRK12746 short chain dehydroge 80.6 3.3 7.2E-05 38.9 5.6 33 203-235 3-36 (254)
402 PRK06196 oxidoreductase; Provi 80.6 3.1 6.8E-05 41.0 5.6 35 201-235 21-56 (315)
403 PRK07831 short chain dehydroge 80.6 2.8 6.2E-05 39.7 5.1 34 204-238 15-50 (262)
404 PRK05875 short chain dehydroge 80.6 3.2 7E-05 39.6 5.5 34 203-236 4-38 (276)
405 PRK12429 3-hydroxybutyrate deh 80.6 3 6.5E-05 39.1 5.2 32 204-235 2-34 (258)
406 PRK08594 enoyl-(acyl carrier p 80.5 3 6.5E-05 39.9 5.3 35 203-238 4-41 (257)
407 PRK05808 3-hydroxybutyryl-CoA 80.5 2.4 5.1E-05 41.5 4.6 32 207-239 4-35 (282)
408 PRK07792 fabG 3-ketoacyl-(acyl 80.5 3.2 6.9E-05 40.9 5.6 36 202-238 8-44 (306)
409 PRK07825 short chain dehydroge 80.4 3.3 7.1E-05 39.6 5.5 35 203-238 2-37 (273)
410 PRK06130 3-hydroxybutyryl-CoA 80.3 2.6 5.5E-05 41.8 4.8 31 207-238 5-35 (311)
411 PRK09620 hypothetical protein; 80.3 3.3 7.1E-05 39.8 5.4 34 204-237 1-51 (229)
412 PRK08265 short chain dehydroge 80.3 3.4 7.3E-05 39.4 5.5 35 203-238 3-38 (261)
413 PRK05562 precorrin-2 dehydroge 80.2 3.1 6.8E-05 40.0 5.2 36 203-238 22-57 (223)
414 KOG2336 Molybdopterin biosynth 80.1 1.9 4.2E-05 42.8 3.8 43 196-239 67-115 (422)
415 PLN02253 xanthoxin dehydrogena 80.1 3.3 7.1E-05 39.7 5.4 35 203-238 15-50 (280)
416 PRK01368 murD UDP-N-acetylmura 80.0 2.4 5.2E-05 44.7 4.8 34 204-239 4-37 (454)
417 PLN00141 Tic62-NAD(P)-related 79.9 3.1 6.8E-05 39.5 5.2 36 203-238 14-50 (251)
418 PLN02712 arogenate dehydrogena 79.9 2.8 6E-05 46.6 5.4 31 205-235 51-81 (667)
419 PRK05653 fabG 3-ketoacyl-(acyl 79.8 3.5 7.5E-05 38.1 5.3 35 203-238 2-37 (246)
420 PRK07856 short chain dehydroge 79.8 3.7 8E-05 38.7 5.6 36 203-239 3-39 (252)
421 PF13460 NAD_binding_10: NADH( 79.8 3.2 6.9E-05 37.0 4.9 31 209-239 1-32 (183)
422 PLN02653 GDP-mannose 4,6-dehyd 79.7 2.9 6.3E-05 41.5 5.0 34 203-236 3-37 (340)
423 PRK06197 short chain dehydroge 79.7 2.9 6.4E-05 40.9 5.0 34 203-236 13-47 (306)
424 PLN02214 cinnamoyl-CoA reducta 79.7 3.1 6.8E-05 41.7 5.3 34 204-237 8-42 (342)
425 TIGR01850 argC N-acetyl-gamma- 79.7 5.8 0.00013 40.4 7.3 96 207-314 1-102 (346)
426 PRK07062 short chain dehydroge 79.6 3.6 7.7E-05 39.1 5.4 36 202-238 4-40 (265)
427 PRK07067 sorbitol dehydrogenas 79.6 3.5 7.5E-05 39.0 5.3 34 204-238 4-38 (257)
428 PLN02986 cinnamyl-alcohol dehy 79.4 3.5 7.5E-05 40.6 5.5 35 204-238 3-38 (322)
429 TIGR03325 BphB_TodD cis-2,3-di 79.4 3.5 7.6E-05 39.2 5.3 35 203-238 2-37 (262)
430 PRK12939 short chain dehydroge 79.4 3.7 8E-05 38.2 5.4 33 203-235 4-37 (250)
431 PRK12771 putative glutamate sy 79.3 2.8 6.1E-05 45.3 5.1 34 204-238 135-168 (564)
432 PLN02662 cinnamyl-alcohol dehy 79.3 2.9 6.3E-05 40.9 4.8 32 205-236 3-35 (322)
433 PRK06129 3-hydroxyacyl-CoA deh 79.1 2.9 6.2E-05 41.6 4.8 32 207-239 3-34 (308)
434 PRK07035 short chain dehydroge 79.1 3.7 8.1E-05 38.6 5.4 35 203-238 5-40 (252)
435 PRK08264 short chain dehydroge 79.0 3.7 7.9E-05 38.2 5.2 35 203-238 3-39 (238)
436 PRK05447 1-deoxy-D-xylulose 5- 79.0 6.2 0.00014 41.0 7.3 32 207-238 2-37 (385)
437 PRK05872 short chain dehydroge 79.0 3.8 8.3E-05 40.0 5.6 35 203-238 6-41 (296)
438 COG1004 Ugd Predicted UDP-gluc 79.0 5 0.00011 41.7 6.5 91 204-313 308-410 (414)
439 cd01487 E1_ThiF_like E1_ThiF_l 79.0 2.8 6.2E-05 38.3 4.3 32 208-239 1-32 (174)
440 PRK09287 6-phosphogluconate de 78.9 4.1 9E-05 43.2 6.1 164 217-395 1-207 (459)
441 TIGR03206 benzo_BadH 2-hydroxy 78.9 3.5 7.7E-05 38.4 5.1 32 204-235 1-33 (250)
442 PRK12937 short chain dehydroge 78.9 4 8.8E-05 37.9 5.5 34 203-236 2-36 (245)
443 PRK08226 short chain dehydroge 78.9 3.7 8E-05 38.9 5.3 35 203-238 3-38 (263)
444 PRK06114 short chain dehydroge 78.9 3.8 8.3E-05 38.7 5.4 36 203-239 5-41 (254)
445 PRK09135 pteridine reductase; 78.9 3.6 7.8E-05 38.2 5.1 33 204-236 4-37 (249)
446 KOG0023 Alcohol dehydrogenase, 78.8 3.8 8.3E-05 41.6 5.4 43 196-239 173-215 (360)
447 PRK06249 2-dehydropantoate 2-r 78.8 2.6 5.6E-05 42.0 4.3 32 205-236 4-35 (313)
448 PRK07577 short chain dehydroge 78.8 3.8 8.2E-05 37.9 5.2 32 205-236 2-34 (234)
449 PRK02705 murD UDP-N-acetylmura 78.8 3 6.5E-05 43.5 5.0 31 208-239 2-32 (459)
450 PRK07576 short chain dehydroge 78.8 3.8 8.3E-05 39.2 5.4 35 203-238 6-41 (264)
451 PRK10537 voltage-gated potassi 78.8 12 0.00026 38.9 9.3 102 206-328 240-350 (393)
452 PRK12770 putative glutamate sy 78.7 9.8 0.00021 38.3 8.6 36 204-239 170-205 (352)
453 PRK06935 2-deoxy-D-gluconate 3 78.7 3.9 8.4E-05 38.7 5.4 35 203-238 12-47 (258)
454 TIGR02437 FadB fatty oxidation 78.7 2.3 4.9E-05 47.6 4.3 32 207-239 314-345 (714)
455 PRK07097 gluconate 5-dehydroge 78.6 3.9 8.5E-05 38.9 5.4 35 203-238 7-42 (265)
456 PRK05866 short chain dehydroge 78.6 4.1 9E-05 39.9 5.7 36 202-238 36-72 (293)
457 PRK07814 short chain dehydroge 78.5 3.8 8.1E-05 39.1 5.3 36 203-239 7-43 (263)
458 PRK07063 short chain dehydroge 78.5 3.9 8.4E-05 38.7 5.3 35 203-238 4-39 (260)
459 PRK06550 fabG 3-ketoacyl-(acyl 78.5 3.9 8.4E-05 37.9 5.2 36 203-239 2-38 (235)
460 PRK06077 fabG 3-ketoacyl-(acyl 78.4 4.4 9.6E-05 37.8 5.6 36 203-238 3-39 (252)
461 PRK07326 short chain dehydroge 78.4 3.7 8.1E-05 38.0 5.1 34 204-238 4-38 (237)
462 PRK06463 fabG 3-ketoacyl-(acyl 78.4 4.7 0.0001 38.1 5.8 34 203-236 4-38 (255)
463 PRK12481 2-deoxy-D-gluconate 3 78.2 3.7 8.1E-05 38.9 5.1 33 203-235 5-38 (251)
464 TIGR02441 fa_ox_alpha_mit fatt 78.2 1.3 2.8E-05 49.7 2.2 32 207-239 336-367 (737)
465 KOG1502 Flavonol reductase/cin 78.2 4.8 0.0001 40.9 6.0 34 205-238 5-39 (327)
466 TIGR03736 PRTRC_ThiF PRTRC sys 78.1 2.8 6E-05 40.8 4.2 25 205-229 10-34 (244)
467 PRK06500 short chain dehydroge 78.1 3.7 8.1E-05 38.3 5.0 34 204-238 4-38 (249)
468 PRK12825 fabG 3-ketoacyl-(acyl 78.1 4.5 9.8E-05 37.3 5.5 35 204-238 4-39 (249)
469 PRK06182 short chain dehydroge 78.1 4 8.7E-05 39.0 5.3 31 205-235 2-33 (273)
470 PLN02514 cinnamyl-alcohol dehy 78.0 6.7 0.00014 39.5 7.1 42 197-238 172-213 (357)
471 PLN02166 dTDP-glucose 4,6-dehy 77.9 3.8 8.3E-05 43.0 5.5 37 200-236 114-151 (436)
472 PRK06914 short chain dehydroge 77.9 4.1 8.8E-05 39.0 5.3 32 205-236 2-34 (280)
473 PF00056 Ldh_1_N: lactate/mala 77.7 4.4 9.5E-05 35.8 5.0 32 207-239 1-35 (141)
474 PLN02730 enoyl-[acyl-carrier-p 77.6 3.5 7.6E-05 41.2 4.9 34 201-234 4-40 (303)
475 TIGR02130 dapB_plant dihydrodi 77.6 5 0.00011 39.8 5.8 115 208-335 2-126 (275)
476 PRK08415 enoyl-(acyl carrier p 77.5 3.8 8.3E-05 39.8 5.0 35 204-239 3-40 (274)
477 PRK12859 3-ketoacyl-(acyl-carr 77.5 4 8.7E-05 38.8 5.1 33 203-235 3-38 (256)
478 PRK05854 short chain dehydroge 77.5 4.2 9.1E-05 40.3 5.4 33 203-235 11-44 (313)
479 PRK07478 short chain dehydroge 77.4 4.4 9.5E-05 38.2 5.3 35 203-238 3-38 (254)
480 PRK06603 enoyl-(acyl carrier p 77.4 3.9 8.4E-05 39.1 5.0 34 204-238 6-42 (260)
481 PRK03803 murD UDP-N-acetylmura 77.3 3.5 7.6E-05 43.0 5.0 33 206-239 6-38 (448)
482 PF00411 Ribosomal_S11: Riboso 77.2 8.8 0.00019 32.7 6.5 63 182-244 38-101 (110)
483 PRK12748 3-ketoacyl-(acyl-carr 77.2 3.9 8.5E-05 38.6 4.9 33 203-235 2-37 (256)
484 PRK08261 fabG 3-ketoacyl-(acyl 77.1 9.6 0.00021 39.6 8.2 33 203-235 207-240 (450)
485 PRK12921 2-dehydropantoate 2-r 77.1 3.4 7.4E-05 40.4 4.6 29 207-235 1-29 (305)
486 PRK12827 short chain dehydroge 77.1 4.4 9.5E-05 37.6 5.1 34 203-236 3-37 (249)
487 PLN00198 anthocyanidin reducta 77.0 4.1 8.9E-05 40.4 5.2 34 203-236 6-40 (338)
488 PRK08017 oxidoreductase; Provi 76.9 4.1 8.9E-05 38.2 5.0 30 207-236 3-33 (256)
489 PRK12769 putative oxidoreducta 76.8 3.7 8E-05 45.3 5.2 35 204-239 325-359 (654)
490 PF01494 FAD_binding_3: FAD bi 76.6 3.8 8.3E-05 39.9 4.8 32 208-240 3-34 (356)
491 PRK03806 murD UDP-N-acetylmura 76.6 4.2 9.2E-05 42.2 5.4 35 204-239 4-38 (438)
492 KOG1429 dTDP-glucose 4-6-dehyd 76.5 4.8 0.0001 40.4 5.3 39 199-238 20-59 (350)
493 PTZ00090 40S ribosomal protein 76.4 12 0.00027 35.7 7.8 67 180-247 156-224 (233)
494 PRK08589 short chain dehydroge 76.4 4.9 0.00011 38.6 5.4 33 203-235 3-36 (272)
495 PRK11730 fadB multifunctional 76.4 2.1 4.5E-05 47.9 3.1 32 207-239 314-345 (715)
496 PRK09242 tropinone reductase; 76.2 4.9 0.00011 37.9 5.3 35 203-238 6-41 (257)
497 PRK07889 enoyl-(acyl carrier p 76.2 4.6 0.0001 38.5 5.1 34 204-238 5-41 (256)
498 CHL00194 ycf39 Ycf39; Provisio 76.2 4.2 9.1E-05 40.2 5.0 31 207-237 1-32 (317)
499 PLN02178 cinnamyl-alcohol dehy 76.1 8.1 0.00018 39.4 7.2 35 204-238 177-211 (375)
500 TIGR03366 HpnZ_proposed putati 76.1 9.1 0.0002 37.0 7.2 34 204-238 119-153 (280)
No 1
>PLN02477 glutamate dehydrogenase
Probab=100.00 E-value=7.5e-134 Score=1025.11 Aligned_cols=410 Identities=84% Similarity=1.331 Sum_probs=406.3
Q ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHhccCCCeEEEEEEEEEeCCCceeEEEEEEEEeeCCCCCCCCCeeeecCCCHHHH
Q 015287 1 MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEV 80 (410)
Q Consensus 1 ~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~v~~p~~~d~G~~~~~~G~rv~h~~~~GPakGGiR~~~~~~~~ev 80 (410)
|++|++++++|++|+++++++|+++++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||++|++|+
T Consensus 1 ~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~v~~p~~~d~g~~~~~~gyRvqh~~~~GP~kGGiR~~p~v~~~ev 80 (410)
T PLN02477 1 MNALAATNRNFREAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPDEV 80 (410)
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHHHhcCceEEEEEEEEEECCCcEEEeeeeEeeecCccCCCCCCeeecCCCCHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhh
Q 015287 81 NALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKF 160 (410)
Q Consensus 81 ~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~f~~~l~~~iG~~~dipapDvgt~~~~m~wi~d~~~~~ 160 (410)
++||+||||||||++||||||||||.+||+++|+.|+|+++|+|+++|.+++||+.|||||||||++++|+||+|+|+++
T Consensus 81 ~~La~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~ 160 (410)
T PLN02477 81 NALAQLMTWKTAVANIPYGGAKGGIGCDPRDLSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKF 160 (410)
T ss_pred HHHHHHHHHHHHhcCCCCcCceeeeccCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCceecCccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCC
Q 015287 161 HGHSPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG 240 (410)
Q Consensus 161 ~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G 240 (410)
.|++|+++||||+.+|||.+|.++|||||+++++++++++|.+++|+||+||||||||+++|++|.++|+|||||||++|
T Consensus 161 ~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G 240 (410)
T PLN02477 161 HGFSPAVVTGKPIDLGGSLGREAATGRGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITG 240 (410)
T ss_pred hCCCCceEeCCCcccCCCCCCCccchHHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccccccceEeecccCCcccccccccccceEEEecCCCCCCHHHH
Q 015287 241 AIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEAD 320 (410)
Q Consensus 241 ~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DvliPaA~~~~I~~~na~~i~akiIvEgAN~p~t~~A~ 320 (410)
++|||+|||+++|++++++++++.+|++++.++++++|..+||||+|||++++||++||++++||+|+||||+|+||+|+
T Consensus 241 ~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~~~DvliP~Al~~~I~~~na~~i~ak~I~egAN~p~t~ea~ 320 (410)
T PLN02477 241 AVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVEPCDVLIPAALGGVINKENAADVKAKFIVEAANHPTDPEAD 320 (410)
T ss_pred eEECCCCCCHHHHHHHHHhcCchhccccceEecCccceeccccEEeeccccccCCHhHHHHcCCcEEEeCCCCCCCHHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCceEeccccccccCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 015287 321 EILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRV 400 (410)
Q Consensus 321 ~iL~~rGI~v~PD~laNaGGVi~s~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~ri 400 (410)
++|++|||+|+||+++|+||||+|||||+||+++++|++++|+++|+++|.++|+++++.|+++++++|+|||++|++||
T Consensus 321 ~~L~~rGI~~~PD~~aNaGGVivs~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a~~rv 400 (410)
T PLN02477 321 EILRKKGVVVLPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNRELDRYMTDAFKALKEMCKTHNCSLRMGAFTLGVNRV 400 (410)
T ss_pred HHHHHCCcEEEChHHhCCCCeeeeHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCC
Q 015287 401 AQATLLRGWE 410 (410)
Q Consensus 401 ~~a~~~rg~~ 410 (410)
+++|+.||||
T Consensus 401 ~~a~~~rG~~ 410 (410)
T PLN02477 401 ARATVLRGWE 410 (410)
T ss_pred HHHHHhhCCC
Confidence 9999999997
No 2
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-131 Score=991.48 Aligned_cols=408 Identities=48% Similarity=0.839 Sum_probs=402.6
Q ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHhccCCCeEEEEEEEEEeCCCceeEEEEEEEEeeCCCCCCCCCeeeecCCCHHHHH
Q 015287 2 NALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVN 81 (410)
Q Consensus 2 ~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~v~~p~~~d~G~~~~~~G~rv~h~~~~GPakGGiR~~~~~~~~ev~ 81 (410)
++|+++++++++|++.++++++++++|++|+|.++|++||+||||++++|+|||||||+++||+|||+||||++|++|++
T Consensus 2 ~~~~~a~~~~~~~~~~~~~~~~~~e~l~~p~r~i~~~i~v~~d~g~~~~~~g~rvqhn~a~GP~kGGiRfhP~v~~~ev~ 81 (411)
T COG0334 2 NEFEQAVKELEKALEPLYLDEGVLERLKEPERVIQVRIPVRMDDGSVKVFRGYRVQHNSALGPYKGGVRFHPYVTLEEVK 81 (411)
T ss_pred cHHHHHHHHHHHhhhhccCchhHHHHhcCceeEEEEEEEEEEcCCcEeeeEEEEEEecCCcCCccCceecCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhh
Q 015287 82 ALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFH 161 (410)
Q Consensus 82 ~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~f~~~l~~~iG~~~dipapDvgt~~~~m~wi~d~~~~~~ 161 (410)
+||+||||||||++||||||||||++||+.+|+.|+|||+|+|+++|.+++||++|||||||||++++|+||+|||+++.
T Consensus 82 ~Ls~~MT~Knal~~Lp~GGGKGgi~~DPk~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~ 161 (411)
T COG0334 82 ALSFWMTLKNALAGLPYGGGKGGIIVDPKGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIV 161 (411)
T ss_pred HHHHHHHHHHHHhCCCCCCCceeeeCCcccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCceecCccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCC
Q 015287 162 GH-SPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG 240 (410)
Q Consensus 162 g~-~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G 240 (410)
|. .|+++||||+++|||.+|.++|||||+++++++++.++.+++|+||+||||||||+++|++|++.|+|||++||++|
T Consensus 162 g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g 241 (411)
T COG0334 162 GNSAPGVFTGKPLELGGSLGRSEATGYGVFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKG 241 (411)
T ss_pred CCCCcceecCCcccccCCCCCCcccceehHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 86 59999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccccccceEeecccCCcccccccccccceEEEecCCCCCCHHHH
Q 015287 241 AIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEAD 320 (410)
Q Consensus 241 ~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DvliPaA~~~~I~~~na~~i~akiIvEgAN~p~t~~A~ 320 (410)
+||||+|||+++|++.+++.+++.+|++++.++++++|+++||||+|||++|+||++||++|+||+|+||||+|+|++|+
T Consensus 242 ~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~~cDIl~PcA~~n~I~~~na~~l~ak~V~EgAN~P~t~eA~ 321 (411)
T COG0334 242 GIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEVDCDILIPCALENVITEDNADQLKAKIVVEGANGPTTPEAD 321 (411)
T ss_pred ceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccccCcEEcccccccccchhhHHHhhhcEEEeccCCCCCHHHH
Confidence 99999999999999888788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCceEeccccccccCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 015287 321 EILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRV 400 (410)
Q Consensus 321 ~iL~~rGI~v~PD~laNaGGVi~s~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~ri 400 (410)
++|.+|||+|+||+++|||||++|||||+||.++++|++|+|+++|+++|.++++.+++.++++++++|+|||++|++||
T Consensus 322 ~i~~erGIl~~PD~laNAGGV~vS~~E~~qn~~~~~wt~eev~~kl~~im~~~~~~~~~~~~~~~~~~r~aA~~~a~~Rv 401 (411)
T COG0334 322 EILLERGILVVPDILANAGGVIVSYLEWVQNAQGLYWTEEEVDEKLERIMVNAFEAVYQAAKEYGVDLRTAAYILAFERV 401 (411)
T ss_pred HHHHHCCCEEcChhhccCcCeeeehHHHHhhcccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCC
Q 015287 401 AQATLLRGW 409 (410)
Q Consensus 401 ~~a~~~rg~ 409 (410)
++||+.|||
T Consensus 402 a~Am~~~G~ 410 (411)
T COG0334 402 ADAMKARGW 410 (411)
T ss_pred HHHHHhcCC
Confidence 999999998
No 3
>PRK14030 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-129 Score=998.48 Aligned_cols=408 Identities=30% Similarity=0.465 Sum_probs=400.9
Q ss_pred CHHHHHHHHHHHHHHHcCCCHH-----HHHhccCCCeEEEEEEEEEeCCCceeEEEEEEEEeeCCCCCCCCCeeeecCCC
Q 015287 2 NALTATNRNFRYAARILGLDSK-----LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVD 76 (410)
Q Consensus 2 ~~~~~~~~~~~~a~~~~~~~~~-----~~~~l~~p~r~~~v~~p~~~d~G~~~~~~G~rv~h~~~~GPakGGiR~~~~~~ 76 (410)
+||+++++++++|+++++++|+ ++++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||+++
T Consensus 19 eF~~~~~~~~~~~~~~l~~~~~y~~~~~~~~l~~p~r~i~~~vp~~~d~G~~~~~~GyRvqhn~~lGP~kGGiR~~p~v~ 98 (445)
T PRK14030 19 EYLQAVKEVLLSVEDVYNQHPEFEKAKIIERIVEPDRIFTFRVPWVDDKGEVQVNLGYRVQFNNAIGPYKGGIRFHPSVN 98 (445)
T ss_pred HHHHHHHHHHHHHHHHHccChhhhhhHHHHHhhcCcEEEEEEEEEEECCCcEEEEeeEEEEecCcccCCCCcEEecCCCC
Confidence 5899999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHH
Q 015287 77 PDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDE 156 (410)
Q Consensus 77 ~~ev~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~f~~~l~~~iG~~~dipapDvgt~~~~m~wi~d~ 156 (410)
++|+++||+||||||||++||||||||||.+||+.+|+.|+||++|+|+++|.++|||++|||||||||++++|+||+|+
T Consensus 99 ~~~v~aLa~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt~~~~M~w~~d~ 178 (445)
T PRK14030 99 LSILKFLGFEQTFKNALTTLPMGGGKGGSDFSPRGKSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGVGGREVGYMFGM 178 (445)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceeeecCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCceecCccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEE
Q 015287 157 YSKFHGHSPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 157 ~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVs 236 (410)
|+++.++.++++||||+.+|||.+|.++|||||++++++++++.|.+++|+||+||||||||+++|++|++.|+|||+||
T Consensus 179 y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavS 258 (445)
T PRK14030 179 YKKLTREFTGTLTGKGLEFGGSLIRPEATGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTIS 258 (445)
T ss_pred HHhccCccccEEEccccccCCCCCCCCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeCCCCCCHHH---HHHHHHhCCCcc-----cCCCCeeecCCcccccccceEeecccCCcccccccccc---cce
Q 015287 237 DITGAIKNPNGIDVPA---LLKYKKSNKSLN-----DFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADV---KAK 305 (410)
Q Consensus 237 D~~G~i~~~~GlDi~~---l~~~~~~~g~v~-----~~~~~~~i~~~~ll~~~~DvliPaA~~~~I~~~na~~i---~ak 305 (410)
|++|+||||+|||+++ |++++++++++. .||+++.++++++|+++||||+|||++|+||++||++| +||
T Consensus 259 D~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~~~~~~~~~cDVliPcAl~n~I~~~na~~l~~~~ak 338 (445)
T PRK14030 259 GPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFAGKKPWEQKVDIALPCATQNELNGEDADKLIKNGVL 338 (445)
T ss_pred cCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcCCccceeccccEEeeccccccCCHHHHHHHHHcCCe
Confidence 9999999999999888 888998888875 78888889999999999999999999999999999999 999
Q ss_pred EEEecCCCCCCHHHHHHHHhCCceEeccccccccCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 015287 306 FIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHN 385 (410)
Q Consensus 306 iIvEgAN~p~t~~A~~iL~~rGI~v~PD~laNaGGVi~s~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~ 385 (410)
+|+||||+|+||+|+++|++|||+|+||+++|||||++|||||+||+++++|++|+|+++|+++|.++|+++++.+++++
T Consensus 339 ~V~EgAN~p~t~eA~~iL~~rGI~~vPD~~aNAGGVivs~~E~~qn~~~~~w~~eeV~~~L~~~m~~~~~~v~~~~~~~~ 418 (445)
T PRK14030 339 CVAEVSNMGCTAEAIDKFIAAKQLFAPGKAVNAGGVATSGLEMSQNAMHLSWSAEEVDEKLHQIMSGIHEQCVKYGKEGD 418 (445)
T ss_pred EEEeCCCCCCCHHHHHHHHHCCCEEeCcceecCCCeeeehhhhhccccccCcCHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --CCHHHHHHHHHHHHHHHHHHHcCC
Q 015287 386 --CNLRMGAFTLGVNRVAQATLLRGW 409 (410)
Q Consensus 386 --~~~r~aA~~~A~~ri~~a~~~rg~ 409 (410)
+++|+|||++|++||++||..|||
T Consensus 419 ~~~~lr~aA~~~a~~rva~a~~~rG~ 444 (445)
T PRK14030 419 GYINYVKGANIAGFMKVAKAMLAQGV 444 (445)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998
No 4
>PRK09414 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=4.5e-126 Score=974.89 Aligned_cols=408 Identities=30% Similarity=0.497 Sum_probs=399.8
Q ss_pred CHHHHHHHHHHHHHHHcCCCHH-----HHHhccCCCeEEEEEEEEEeCCCceeEEEEEEEEeeCCCCCCCCCeeeecCCC
Q 015287 2 NALTATNRNFRYAARILGLDSK-----LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVD 76 (410)
Q Consensus 2 ~~~~~~~~~~~~a~~~~~~~~~-----~~~~l~~p~r~~~v~~p~~~d~G~~~~~~G~rv~h~~~~GPakGGiR~~~~~~ 76 (410)
++|++++.+|++|+++++++|+ ++++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||+++
T Consensus 23 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~l~~p~r~i~v~~pv~~d~g~~~~~~gyRv~h~~~~GPakGG~R~~p~v~ 102 (445)
T PRK09414 23 EFHQAVREVLESLWPVLEKNPEYAEAGILERLVEPERVIIFRVPWVDDKGQVQVNRGFRVQFNSAIGPYKGGLRFHPSVN 102 (445)
T ss_pred hHHHHHHHHHHHHHHHhccChhhhhhhHHHHhcCCceEEEEEEEEEECCCcEEEEeeeEEEecCCCcCCCCceeecCCCC
Confidence 6899999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHH
Q 015287 77 PDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDE 156 (410)
Q Consensus 77 ~~ev~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~f~~~l~~~iG~~~dipapDvgt~~~~m~wi~d~ 156 (410)
++|+.+||+||||||||++||||||||||.+||+++|+.|+|||+|+|+++|.+++||..|||+|||||++++|+||+|+
T Consensus 103 ~~ev~aLA~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~ 182 (445)
T PRK09414 103 LSILKFLGFEQIFKNALTGLPIGGGKGGSDFDPKGKSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQ 182 (445)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceeeeecCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCceecCccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEE
Q 015287 157 YSKFHGHSPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 157 ~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVs 236 (410)
|+++.++..+++||||+.+|||.+|.++|||||++++++++++.+.+++|+||+||||||||+++|++|++.|+|||+||
T Consensus 183 y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavs 262 (445)
T PRK09414 183 YKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCS 262 (445)
T ss_pred HHhhcCcceEEEecCCcccCCCCCCCCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 99999987799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeCCCCCCHHHHHHHHHhC-CCcccCC---CCeeecCCcccccccceEeecccCCcccccccccc---cceEEEe
Q 015287 237 DITGAIKNPNGIDVPALLKYKKSN-KSLNDFQ---GGNAMDLNDLLVHECDVLVPCALGGVLNKENAADV---KAKFIIE 309 (410)
Q Consensus 237 D~~G~i~~~~GlDi~~l~~~~~~~-g~v~~~~---~~~~i~~~~ll~~~~DvliPaA~~~~I~~~na~~i---~akiIvE 309 (410)
|++|++|||+|||+++|+++++++ +++.+|+ +++.++++++++++||||||||++|+||++||.++ +||+|+|
T Consensus 263 Ds~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~~~d~DVliPaAl~n~It~~~a~~i~~~~akiIvE 342 (445)
T PRK09414 263 DSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPWSVPCDIALPCATQNELDEEDAKTLIANGVKAVAE 342 (445)
T ss_pred cCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCccccccCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEc
Confidence 999999999999999999999886 5788887 45678999999999999999999999999999999 9999999
Q ss_pred cCCCCCCHHHHHHHHhCCceEeccccccccCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC--CC
Q 015287 310 AANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHN--CN 387 (410)
Q Consensus 310 gAN~p~t~~A~~iL~~rGI~v~PD~laNaGGVi~s~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~--~~ 387 (410)
|||+|+||+|+++|++|||+|+||+++||||||+|||||+||.++++|++++|+++|+++|.++|+++++.+++++ ++
T Consensus 343 gAN~p~t~~A~~~L~~rGI~~vPD~laNaGGVivs~~E~~qn~~~~~w~~~~V~~~l~~~m~~~~~~~~~~~~~~~~~~~ 422 (445)
T PRK09414 343 GANMPSTPEAIEVFLEAGVLFAPGKAANAGGVATSGLEMSQNASRLSWTFEEVDARLHDIMKNIHHACVETAEEYGKPGN 422 (445)
T ss_pred CCCCCCCHHHHHHHHHCCcEEECchhhcCCCeeeeehhhccccccceecHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC
Q 015287 388 LRMGAFTLGVNRVAQATLLRGW 409 (410)
Q Consensus 388 ~r~aA~~~A~~ri~~a~~~rg~ 409 (410)
+|+|||++|++||++||+.|||
T Consensus 423 ~r~aA~~~a~~rv~~a~~~rG~ 444 (445)
T PRK09414 423 YVAGANIAGFVKVADAMLAQGV 444 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999997
No 5
>PRK14031 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=4.3e-122 Score=943.42 Aligned_cols=407 Identities=30% Similarity=0.465 Sum_probs=389.5
Q ss_pred HHHHHHHHHHHHHHHcCCCHHH-----HHhccCCCeEEEEEEEEEeCCCceeEEEEEEEEeeCCCCCCCCCeeeecCCCH
Q 015287 3 ALTATNRNFRYAARILGLDSKL-----ERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDP 77 (410)
Q Consensus 3 ~~~~~~~~~~~a~~~~~~~~~~-----~~~l~~p~r~~~v~~p~~~d~G~~~~~~G~rv~h~~~~GPakGGiR~~~~~~~ 77 (410)
++|.+.+.++.-...++-+|.+ +++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||++++
T Consensus 20 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~gyRvqhn~~lGP~kGGiR~~p~v~~ 99 (444)
T PRK14031 20 YHQAVEEVLSTIEEEYNKHPEFDKANLIERLCIPDRVYQFRVTWVDDKGNVQTNMGYRVQHNNAIGPYKGGIRFHASVNL 99 (444)
T ss_pred HHHHHHHHHHHHHHHHHhChhhhhhhHHHHhhcCceEEEEEEEEEECCCCEEEEeeEEEEecCCCcCCCCCeeecCCCCH
Confidence 5677777777777777766665 56999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHh
Q 015287 78 DEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEY 157 (410)
Q Consensus 78 ~ev~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~f~~~l~~~iG~~~dipapDvgt~~~~m~wi~d~~ 157 (410)
+|+++||+||||||||++||||||||||.+||+++|+.|+||++|+|+++|.++|||..|||||||||++++|+||+|+|
T Consensus 100 ~~v~aLa~~MT~K~Al~~lP~GGgKggi~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y 179 (444)
T PRK14031 100 GILKFLAFEQTFKNSLTTLPMGGGKGGSDFSPRGKSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMY 179 (444)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCceeeeeCCCCCCCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCceecCccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEEC
Q 015287 158 SKFHGHSPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSD 237 (410)
Q Consensus 158 ~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 237 (410)
+++.++.++++||||+.+|||.+|.++|||||++++++++++.|.+|+|+||+||||||||+++|++|++.|+|||+|||
T Consensus 180 ~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 180 KKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred HhhcCCcceEECCCccccCCCCCCCcccHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeCCCCCCHHHHH---HHHHh-CCCcccCC---CCeeecCCcccccccceEeecccCCcccccccccccce---EE
Q 015287 238 ITGAIKNPNGIDVPALL---KYKKS-NKSLNDFQ---GGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAK---FI 307 (410)
Q Consensus 238 ~~G~i~~~~GlDi~~l~---~~~~~-~g~v~~~~---~~~~i~~~~ll~~~~DvliPaA~~~~I~~~na~~i~ak---iI 307 (410)
++|++|||+|||+++|. +++.. ++++.+|+ +++.++++++|+.+||||+|||++++||++||++|+|+ +|
T Consensus 260 ~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~~d~~~~~~cDIliPaAl~n~I~~~na~~l~a~g~~~V 339 (444)
T PRK14031 260 SDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVEGARPWGEKGDIALPSATQNELNGDDARQLVANGVIAV 339 (444)
T ss_pred CCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcCCcccccCCCcEEeecccccccCHHHHHHHHhcCCeEE
Confidence 99999999999999986 55554 56787776 56778999999999999999999999999999999986 99
Q ss_pred EecCCCCCCHHHHHHHHhCCceEeccccccccCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc--C
Q 015287 308 IEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTH--N 385 (410)
Q Consensus 308 vEgAN~p~t~~A~~iL~~rGI~v~PD~laNaGGVi~s~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~--~ 385 (410)
+||||+|+||+|+++|++|||+++||+++|||||++|||||+||+++++|++|+|+++|+++|.++|+++++.++++ +
T Consensus 340 ~EgAN~P~t~eA~~~L~~rgI~~~PD~~aNAGGVivs~~E~~qn~~~~~W~~eeV~~~L~~~m~~~~~~v~~~~~~~~~~ 419 (444)
T PRK14031 340 SEGANMPSTPEAIKVFQDAKILYAPGKAANAGGVSVSGLEMTQNSIKLSWSSEEVDEKLKSIMKNIHEACVQYGTEADGY 419 (444)
T ss_pred ECCCCCCCCHHHHHHHHHCCcEEeChhhccCCCeeeehhhhhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988 6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHcCC
Q 015287 386 CNLRMGAFTLGVNRVAQATLLRGW 409 (410)
Q Consensus 386 ~~~r~aA~~~A~~ri~~a~~~rg~ 409 (410)
+++|+|||++|++||++||+.|||
T Consensus 420 ~~~r~aA~~~a~~rva~a~~~~G~ 443 (444)
T PRK14031 420 VNYVKGANVAGFMKVAKAMMAQGI 443 (444)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999997
No 6
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-121 Score=936.67 Aligned_cols=387 Identities=30% Similarity=0.508 Sum_probs=375.6
Q ss_pred HHHHhccCCCeEEEEEEEEEeCCCceeEEEEEEEEeeCCCCCCCCCeeeecCCCHHHHHHHHHHHHHHHhhcCCCCCCce
Q 015287 23 KLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAK 102 (410)
Q Consensus 23 ~~~~~l~~p~r~~~v~~p~~~d~G~~~~~~G~rv~h~~~~GPakGGiR~~~~~~~~ev~~LA~~Mt~K~Al~~lp~GGaK 102 (410)
.++++|++|+|+|+|++||+||||++++|+|||||||+++||+||||||||++|++|+++||++|||||||++||+||||
T Consensus 54 ~i~e~l~~Per~i~~~vp~~~D~G~v~v~~GyRVqhn~alGP~kGGlRfhp~v~~~~vk~La~~mt~KnAl~gLP~GGgK 133 (454)
T PTZ00079 54 GVLERLVEPERVIQFRVPWVDDKGEQRVNRGFRVQYNSALGPYKGGLRFHPSVNLSILKFLGFEQIFKNSLTTLPMGGGK 133 (454)
T ss_pred HHHHHhccCceEEEEEEEEEECCCCEEEEeeEEEEEcCCCCCCCCCEEeeCCCCHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCccccCCCCCCCC
Q 015287 103 GGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRE 182 (410)
Q Consensus 103 ggI~~dP~~~s~~e~e~~~r~f~~~l~~~iG~~~dipapDvgt~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~ 182 (410)
|||.+||+.+|+.|++|++|+|+++|.++|||..||||||+||++++|+||+++|+++.+..|+++||||+.+|||.+|.
T Consensus 134 GGi~~dPk~~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~ 213 (454)
T PTZ00079 134 GGSDFDPKGKSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRP 213 (454)
T ss_pred eeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCCCHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHH---HHHHHh
Q 015287 183 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAL---LKYKKS 259 (410)
Q Consensus 183 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l---~~~~~~ 259 (410)
++|||||++++++++++.+.+++|+||+||||||||+++|++|++.|+|||+|||++|+||||+|||+++| .++++.
T Consensus 214 eATG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~ 293 (454)
T PTZ00079 214 EATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNV 293 (454)
T ss_pred cccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888 666665
Q ss_pred C-CCcccCC----CCeeecCCcccccccceEeecccCCcccccccccc---cceEEEecCCCCCCHHHHHHHHhCCceEe
Q 015287 260 N-KSLNDFQ----GGNAMDLNDLLVHECDVLVPCALGGVLNKENAADV---KAKFIIEAANHPTDPEADEILSKKGVVIL 331 (410)
Q Consensus 260 ~-g~v~~~~----~~~~i~~~~ll~~~~DvliPaA~~~~I~~~na~~i---~akiIvEgAN~p~t~~A~~iL~~rGI~v~ 331 (410)
+ +++.+|+ +++.++++++|+++||||+|||++|+||++||++| +||+|+||||+|+|++|+++|++|||+|+
T Consensus 294 ~~g~i~~~~~~~~~a~~~~~~~~~~~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~~L~~~GI~~~ 373 (454)
T PTZ00079 294 KRGRLKEYAKHSSTAKYVPGKKPWEVPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATHLFKKNGVIFC 373 (454)
T ss_pred cCCcHHhhhhccCCcEEeCCcCcccCCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHCCcEEE
Confidence 4 6777764 56788999999999999999999999999999987 99999999999999999999999999999
Q ss_pred ccccccccCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHcCC
Q 015287 332 PDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTH--NCNLRMGAFTLGVNRVAQATLLRGW 409 (410)
Q Consensus 332 PD~laNaGGVi~s~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~--~~~~r~aA~~~A~~ri~~a~~~rg~ 409 (410)
||+++|||||++|||||+||+++++|++|+|+++|+++|.++|+++++.++++ ++++|+|||+.|+.||++||..|||
T Consensus 374 PD~~aNAGGV~vS~~E~~Qn~~~~~W~~eeV~~~L~~~M~~~~~~~~~~a~~~~~~~~~r~~A~i~~~~rva~Am~~~G~ 453 (454)
T PTZ00079 374 PGKAANAGGVAISGLEMSQNAARLQWTAEEVDEKLREIMKSIFEACVKYAEKYGGKSDLVAGANIAGFLKVADSMIEQGC 453 (454)
T ss_pred ChhhhcCCCeeeehHHhhhhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999998 5899999999999999999999997
No 7
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-105 Score=805.52 Aligned_cols=387 Identities=51% Similarity=0.805 Sum_probs=365.4
Q ss_pred HHHHhccCCCeEEEEEEEEEeCCCceeEEEEEEEEeeCCCCCCCCCeeeecCCCHHHHHHHHHHHHHHHhhcCCCCCCce
Q 015287 23 KLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAK 102 (410)
Q Consensus 23 ~~~~~l~~p~r~~~v~~p~~~d~G~~~~~~G~rv~h~~~~GPakGGiR~~~~~~~~ev~~LA~~Mt~K~Al~~lp~GGaK 102 (410)
.++.+|..|+|+++|++||.+|+|+.+|+.||||||+.+|||+||||||||+++++++++||+.||||||+.++|+||||
T Consensus 66 ~Il~~l~p~~~~i~~~~p~~~d~G~~~V~~gfRvqh~~argP~KGGIR~hpsvn~d~~k~La~~~t~K~A~tdiP~GGaK 145 (514)
T KOG2250|consen 66 AILFRLDPPERVIKFRVPIPRDDGEFEVINGFRVQHNRARGPAKGGIRYHPSVNLDIVKALAFLMTYKNALTDIPYGGAK 145 (514)
T ss_pred hhhhhcCccceeEEEEeceecCCceEEEeechhhhhhhccCcccCceEeCCcCCHHHHHHHHHHHHHHhhccCCCCCCCc
Confidence 56668889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCccccCCCCCCCC
Q 015287 103 GGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRE 182 (410)
Q Consensus 103 ggI~~dP~~~s~~e~e~~~r~f~~~l~~~iG~~~dipapDvgt~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~ 182 (410)
|||.+||+.+|..|+||+||+|+++|.++|||.+|+|+|||||++++|.|++++|++.+|++++++||||+.+|||.+|.
T Consensus 146 GGi~~dPk~~s~nEi~r~~~~f~~el~~~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~ 225 (514)
T KOG2250|consen 146 GGILIDPKGKSDNEIERITRRFTDELIDIIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRY 225 (514)
T ss_pred CccccCccccchHHHHHHHHHHHHHHHHHcCCCCCCCccccccCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhC--CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhC
Q 015287 183 AATGLGVFFATEALLAEHG--KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN 260 (410)
Q Consensus 183 ~aTg~Gv~~~~~~~~~~~g--~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~ 260 (410)
+||||||+++++.++++++ .+++|+||+||||||||++++++|++.|+++|+|+|++|+|+||+|||+++|.++++++
T Consensus 226 ~ATG~GV~~y~e~~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~~G~l~np~Gid~~eL~~~~~~k 305 (514)
T KOG2250|consen 226 EATGRGVVYYVEAILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDSKGVLINPDGIDIEELLDLADEK 305 (514)
T ss_pred cccchhHHHHHHHHHHhccCCCCcCceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcCceeEECCCCCCHHHHHHHHHhh
Confidence 9999999999999999887 56999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCeeecCC-------cccccccceEeecccCCcccccccccccce---EEEecCCCCCCHHHHHHHHhCCceE
Q 015287 261 KSLNDFQGGNAMDLN-------DLLVHECDVLVPCALGGVLNKENAADVKAK---FIIEAANHPTDPEADEILSKKGVVI 330 (410)
Q Consensus 261 g~v~~~~~~~~i~~~-------~ll~~~~DvliPaA~~~~I~~~na~~i~ak---iIvEgAN~p~t~~A~~iL~~rGI~v 330 (410)
+++.+|++++...+. .+|..+||||+|||.+|+||.+||..+.++ +||||||+|+||+|+++|+++||++
T Consensus 306 ~~i~~f~~~~~~~~~~~~~~~~~~~v~~~DI~vPCA~qn~I~~~nA~~lvak~~~~IvEGAN~ptTpeA~~vlek~gv~i 385 (514)
T KOG2250|consen 306 KTIKSFDGAKLSYEGYIAGLPPWTLVEKCDILVPCATQNEITGENAKALVAKGCKYIVEGANMPTTPEADEVLEKAGVLI 385 (514)
T ss_pred ccccccccccccCccccccCcchhhHhhCcEEeecCccCcccHhhHHHHHhcCCcEEEecCCCCCChhHHHHHHhCCeEE
Confidence 999999988754443 678889999999999999999999999766 9999999999999999999999999
Q ss_pred eccccccccCceehhHHHhhhcc-------cCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHcC--------CCHHHH
Q 015287 331 LPDIYANSGGVTVSYFEWVQNIQ-------GFMWEEEKVNHELKRYMMSAFKDI----KTMCQTHN--------CNLRMG 391 (410)
Q Consensus 331 ~PD~laNaGGVi~s~~E~~qn~~-------~~~w~~~~v~~~l~~~m~~~~~~v----~~~a~~~~--------~~~r~a 391 (410)
+||..||+|||++|||||+||++ .+.|++|.|...|.++|...+... ++.+++++ .++...
T Consensus 386 ~Pd~~aNaGGVtvS~~E~l~nl~~~s~g~~~~~~~~e~v~~~L~~v~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~g 465 (514)
T KOG2250|consen 386 IPDIYANAGGVTVSYFEWLQNLNHVSYGKLTFKWTEEKVDSLLASVQENLSRKQGKANLEPAAEFKDRIQGTSEKDLVHG 465 (514)
T ss_pred echhhccCCCeeeeHHHHHHhcccccccceeEEeehhhHHHHHHHHHHHHHHhccCcccchHHHhhhhhcCCCchHHhhh
Confidence 99999999999999999999999 689999999999999777776666 54443322 478999
Q ss_pred HHHHHHHHHHHHHHHcCC
Q 015287 392 AFTLGVNRVAQATLLRGW 409 (410)
Q Consensus 392 A~~~A~~ri~~a~~~rg~ 409 (410)
|.+.++.|++++|..+|+
T Consensus 466 al~~~~~kva~ai~~~g~ 483 (514)
T KOG2250|consen 466 ALIATFNKVARAITDQGD 483 (514)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 999999999999998874
No 8
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=100.00 E-value=5.6e-84 Score=703.16 Aligned_cols=366 Identities=24% Similarity=0.295 Sum_probs=343.5
Q ss_pred cCCCHHHHHhccCCCeEEEEEEEEEeCCCceeEEEEEEEEeeCCCCCCCCCeeeecC-----------CCHHHHHHHHHH
Q 015287 18 LGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPE-----------VDPDEVNALAQL 86 (410)
Q Consensus 18 ~~~~~~~~~~l~~p~r~~~v~~p~~~d~G~~~~~~G~rv~h~~~~GPakGGiR~~~~-----------~~~~ev~~LA~~ 86 (410)
++++|++++.|+.|++.+.+.+|+ | +.|+|||+||+.+ ++||+||||+ ++++|+++||+|
T Consensus 459 Frldp~~l~~l~~P~~p~~v~fv~----G--~~f~G~hvR~~di---ARGGiR~~~s~~~edy~tn~~~~~dEv~~LA~t 529 (1002)
T PTZ00324 459 FRLDPSFLSELEYPRVPYGVFLVA----G--AQFRGFHIRFTDI---ARGGVRMIQSFKEQAYRRNKRSVFDENYNLAST 529 (1002)
T ss_pred EeCCHHHHhhcCCCCceEEEEEEE----C--CcEEEEEEecCCc---ccceeEEecCcchhhhhhcccCcHHHHHHHHHH
Confidence 479999999999999999999999 4 8999999999999 9999999998 889999999999
Q ss_pred HHHHHhhcCCCCCCceeEEecCCCCCCH---HHHHHHHHHHHHHHhhccCCCCcc-----------cCCCCCCCHHHHHH
Q 015287 87 MTWKTAVAAIPYGGAKGGIGCNPRELSM---SELERLTRVFTQKIHDLIGIHRDV-----------PAPDMGTNSQTMAW 152 (410)
Q Consensus 87 Mt~K~Al~~lp~GGaKggI~~dP~~~s~---~e~e~~~r~f~~~l~~~iG~~~di-----------papDvgt~~~~m~w 152 (410)
||+||| +||+|||||||++||+.+++ .|+|+++|+|+++|.+++||..|| ||||+||+++.|+|
T Consensus 530 qt~KNa--dIP~GGaKGgi~vdp~~~~~~~~~e~er~~r~yi~aLlDli~p~~dIVd~~~~de~l~~aPD~ntta~~mdw 607 (1002)
T PTZ00324 530 QLLKNK--DIPEGGSKGTILLSSRYLNKFAQVRCQHAFLQYIDALLDVMLPGEKVVDHLKQEEIIFLGPDEHTTGTLMDW 607 (1002)
T ss_pred HHHhcC--CCCCCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHhcCCCcccccccCCccccccCCCCCCCHHHHHH
Confidence 999997 99999999999999999887 889999999999999999999998 99999999999999
Q ss_pred HHHHhhhhhCCC--CceecCccccCCCCCCCC-chhHHHHHHHHHHHHHHhCCCCCCCeEEEEc--cChHHHHHHHHHHH
Q 015287 153 ILDEYSKFHGHS--PAVVTGKPIDLGGSLGRE-AATGLGVFFATEALLAEHGKSISNMKFAIQG--FGNVGSWAAKFFHE 227 (410)
Q Consensus 153 i~d~~~~~~g~~--~~~~tGkp~~~GGs~gr~-~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG--fGnVG~~~a~~L~~ 227 (410)
| ++|++.+|++ ++++||||+.+||+.|+. ++||+||+++++++++++|+++++.||++|| ||+||++.++++.
T Consensus 608 a-~~~s~~rG~~~~~af~TGKp~~lGG~~hk~yG~T~rGv~~~v~~~~~~lgid~~~~Tv~~~Ggp~GDVGgN~~lls~- 685 (1002)
T PTZ00324 608 A-ALHAKKRGYPFWKSFTTGKSPSMGGIPHDTYGMTTRSVRAYVTGILEKLGLNEEEVTKFQTGGPDGDLGSNELLLSK- 685 (1002)
T ss_pred H-HHHHHHcCCCCCCCEEeCCCcccCCcCCCcCcccchhHHHHHHHHHHHcCCCccCCEEEEECCCCchHHHHHHHHhC-
Confidence 9 8999999985 899999999999999998 9999999999999999999999999999999 9999999999874
Q ss_pred CCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCC---------------------CCeee-----cCCcc---c
Q 015287 228 HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQ---------------------GGNAM-----DLNDL---L 278 (410)
Q Consensus 228 ~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~---------------------~~~~i-----~~~~l---l 278 (410)
+|||||+|++|++|||+|||+++|.++++.++++.+|+ ++..+ .++++ +
T Consensus 686 --~klVAv~D~~G~~~DP~GLd~~EL~rl~~~~~s~~~yd~~~lS~gG~~~~r~~k~i~l~~~~~i~~g~~~~~~~~l~~ 763 (1002)
T PTZ00324 686 --EKTVGIVDGSGVLHDPEGLNREELRRLAHHRLPAREFDESKLSPQGFLVLTDDRDVKLPDGTIVESGLRFRNEFHLLP 763 (1002)
T ss_pred --CEEEEEEcCCCEEECCCCCCHHHHHHHHHcCCCcccCchhhccCCCceeecccccccCCccceeccccccchhhcccc
Confidence 79999999999999999999999999999988888653 22222 23444 5
Q ss_pred ccccceEeeccc-CCccccccc--------ccccceEEEecCCCCCCHHHHHHHHhCCceEeccccccccCceehhHHHh
Q 015287 279 VHECDVLVPCAL-GGVLNKENA--------ADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWV 349 (410)
Q Consensus 279 ~~~~DvliPaA~-~~~I~~~na--------~~i~akiIvEgAN~p~t~~A~~iL~~rGI~v~PD~laNaGGVi~s~~E~~ 349 (410)
..+|||||||+. +++||++|+ .+++||+||||||+|+||+|+.+|++|||+++||+++|+|||++|||||+
T Consensus 764 ~~~vDlliPaggr~~~I~~~Na~~~~~~~~~~irakvIvEGANlpiT~eAr~~L~~~Gv~IipD~laNsGGV~~S~~Evl 843 (1002)
T PTZ00324 764 YSDADVFVPCGGRPRSVTLFNVGRFFDEKNGKLRFKIIVEGANLFITQDARLALEECGVILFKDASANKGGVTSSSLEVL 843 (1002)
T ss_pred CCCccEEEECCCCcCccCHHHHhhhhhccccCceeEEEEECCCCCCCHHHHHHHHHCCCEEcCcchhcCCCcEeeHHHHH
Confidence 789999999998 999999999 78999999999999999999999999999999999999999999999999
Q ss_pred hhcc------------------cCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 015287 350 QNIQ------------------GFMWE--EEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVN 398 (410)
Q Consensus 350 qn~~------------------~~~w~--~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~ 398 (410)
||++ +.+|+ .++|+++|+++|...|+.||+.+++.++++|++|..+..+
T Consensus 844 ~~l~l~d~ef~~~m~~~~~~~~~~f~~~yv~eV~~~L~~~a~~ef~~i~~~~~~~~~~~r~asd~lS~~ 912 (1002)
T PTZ00324 844 AALALSDEEFAEHMCVKDATDAPEFYKKYVKEILDRIEENARLEFNAIWREELRTGKPRCLLADVLSRK 912 (1002)
T ss_pred hccccchhhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 9998 78899 9999999999999999999999999999999999987643
No 9
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=100.00 E-value=1.4e-73 Score=549.09 Aligned_cols=241 Identities=32% Similarity=0.501 Sum_probs=231.5
Q ss_pred cCccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCC
Q 015287 169 TGKPIDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGI 248 (410)
Q Consensus 169 tGkp~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~Gl 248 (410)
||||+.+|||.||.++|||||++++++++++++.+++|+||+||||||||+++|++|.+.|+|||+|||++|++|||+||
T Consensus 1 TGKp~~~GGs~gR~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gl 80 (254)
T cd05313 1 TGKGLSWGGSLIRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGF 80 (254)
T ss_pred CCCCCcCCCCCCCCchhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHH---HHHHHhCCC-cccCC----CCeeecCCcccccccceEeecccCCcccccccccc---cceEEEecCCCCCCH
Q 015287 249 DVPAL---LKYKKSNKS-LNDFQ----GGNAMDLNDLLVHECDVLVPCALGGVLNKENAADV---KAKFIIEAANHPTDP 317 (410)
Q Consensus 249 Di~~l---~~~~~~~g~-v~~~~----~~~~i~~~~ll~~~~DvliPaA~~~~I~~~na~~i---~akiIvEgAN~p~t~ 317 (410)
|+++| .++++++++ +.+|+ +++.++++++|+++||||+|||++++||++||++| +||+|+||||+|+||
T Consensus 81 d~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~ 160 (254)
T cd05313 81 TGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA 160 (254)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchhcCCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCH
Confidence 99988 566766665 45553 57889999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHhCCceEeccccccccCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHH
Q 015287 318 EADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHN--CNLRMGAFTL 395 (410)
Q Consensus 318 ~A~~iL~~rGI~v~PD~laNaGGVi~s~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~--~~~r~aA~~~ 395 (410)
+|+++|++|||+|+||+++|+||||+|||||+||+++++|++|+|+++|+++|.++|+++++.+++++ ++||+|||++
T Consensus 161 ~a~~~L~~rGI~vvPD~laNaGGVivs~~E~~qn~~~~~w~~e~V~~~l~~~m~~~~~~v~~~a~~~~~~~~lr~aA~~~ 240 (254)
T cd05313 161 EAIEVFRQAGVLFAPGKAANAGGVAVSGLEMSQNSQRLSWTAEEVDAKLKDIMKNIHDACAETAKKYGDPPDLVAGANIA 240 (254)
T ss_pred HHHHHHHHCCcEEECchhhcCCCeeeeHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHHHcCC
Q 015287 396 GVNRVAQATLLRGW 409 (410)
Q Consensus 396 A~~ri~~a~~~rg~ 409 (410)
|++||++||+.||+
T Consensus 241 a~~rv~~a~~~rG~ 254 (254)
T cd05313 241 GFLKVADAMLAQGV 254 (254)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999999996
No 10
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=100.00 E-value=1.2e-65 Score=493.73 Aligned_cols=233 Identities=50% Similarity=0.850 Sum_probs=223.5
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhCCC-CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHH
Q 015287 176 GGSLGREAATGLGVFFATEALLAEHGKS-ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALL 254 (410)
Q Consensus 176 GGs~gr~~aTg~Gv~~~~~~~~~~~g~~-l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~ 254 (410)
|||.+|.++|||||++++++++++++.+ ++|+||+||||||||+++|++|++.|++||+|||++|++|||+|||+++|+
T Consensus 1 GGs~~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~ 80 (244)
T PF00208_consen 1 GGSGGRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELL 80 (244)
T ss_dssp TCHTTTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHH
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHH
Confidence 8999999999999999999999998876 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCC-cccCC-----CCeeecCC-cccccccceEeecccCCcccccccc-ccc--ceEEEecCCCCCCHHHHHHHH
Q 015287 255 KYKKSNKS-LNDFQ-----GGNAMDLN-DLLVHECDVLVPCALGGVLNKENAA-DVK--AKFIIEAANHPTDPEADEILS 324 (410)
Q Consensus 255 ~~~~~~g~-v~~~~-----~~~~i~~~-~ll~~~~DvliPaA~~~~I~~~na~-~i~--akiIvEgAN~p~t~~A~~iL~ 324 (410)
+++++.++ +..|+ +.+.++++ ++|+++||||+|||++++||++|++ .|+ ||+||||||+|+||+|+++|+
T Consensus 81 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~~L~ 160 (244)
T PF00208_consen 81 RIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADEILR 160 (244)
T ss_dssp HHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHHHHH
T ss_pred HHHHHhCCcccccccccccceeEeccccccccccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHHHHH
Confidence 99999888 99887 46778774 9999999999999999999999999 999 999999999999999999999
Q ss_pred hCCceEeccccccccCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 015287 325 KKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQAT 404 (410)
Q Consensus 325 ~rGI~v~PD~laNaGGVi~s~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~ri~~a~ 404 (410)
+|||+|+||+++|+||||+||+||+||+++++|++++|.++++++|.+++++|++.|+++++++|+|||++|++||++||
T Consensus 161 ~rGI~viPD~~aNaGGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~~~aA~~~A~~rv~~a~ 240 (244)
T PF00208_consen 161 ERGILVIPDFLANAGGVIVSYFEWLQNLQGLFWTEEEVFEKLEEIMDRAFKRVLERAEEEGISLRQAAYILAFERVAAAM 240 (244)
T ss_dssp HTT-EEE-HHHHTTHHHHHHHHHHHHHHHTSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred HCCCEEEcchhhcCCCeEeehhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcC
Q 015287 405 LLRG 408 (410)
Q Consensus 405 ~~rg 408 (410)
+.||
T Consensus 241 ~~rG 244 (244)
T PF00208_consen 241 KLRG 244 (244)
T ss_dssp HHTT
T ss_pred HhcC
Confidence 9998
No 11
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=100.00 E-value=4e-62 Score=464.86 Aligned_cols=226 Identities=54% Similarity=0.894 Sum_probs=221.9
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHH
Q 015287 176 GGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLK 255 (410)
Q Consensus 176 GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~ 255 (410)
|||.+|.++|||||++++++++++++.+++++||+|||||+||++++++|.++|++||+|+|++|++|||+|||+++|++
T Consensus 1 gG~~~~~~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~ 80 (227)
T cd01076 1 GGSLGREEATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLA 80 (227)
T ss_pred CCCCCCCccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHH
Confidence 79999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcccCCCCeeecCCcccccccceEeecccCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEecccc
Q 015287 256 YKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIY 335 (410)
Q Consensus 256 ~~~~~g~v~~~~~~~~i~~~~ll~~~~DvliPaA~~~~I~~~na~~i~akiIvEgAN~p~t~~A~~iL~~rGI~v~PD~l 335 (410)
++++++++..|++++.++++++++.+||||+|||++++||++|+++++||+|+||||+|+||+|+++|++|||+|+||++
T Consensus 81 ~~~~~g~l~~~~~~~~~~~~~i~~~~~Dvlip~a~~~~i~~~~~~~l~a~~I~egAN~~~t~~a~~~L~~rGi~~~PD~~ 160 (227)
T cd01076 81 YKKEHGSVLGFPGAERITNEELLELDCDILIPAALENQITADNADRIKAKIIVEAANGPTTPEADEILHERGVLVVPDIL 160 (227)
T ss_pred HHHhcCCcccCCCceecCCccceeecccEEEecCccCccCHHHHhhceeeEEEeCCCCCCCHHHHHHHHHCCCEEEChHH
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 015287 336 ANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVA 401 (410)
Q Consensus 336 aNaGGVi~s~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~ri~ 401 (410)
+|+||||+||+||.||++++.|++++|.+++++.|.+++.++++.++++++++|++||.+|++||+
T Consensus 161 aNaGGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~i~~~~~~v~~~a~~~~~~~~~aA~~~a~~rl~ 226 (227)
T cd01076 161 ANAGGVTVSYFEWVQNLQGFYWDEEEVNSRLETKMREAFEAVLETAEKYGVDLRTAAYVLALERVA 226 (227)
T ss_pred hcCcchhhhHHHHhhhhccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999986
No 12
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=100.00 E-value=3.2e-61 Score=455.70 Aligned_cols=217 Identities=40% Similarity=0.646 Sum_probs=211.6
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCc
Q 015287 184 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL 263 (410)
Q Consensus 184 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v 263 (410)
||||||++++++++++++.+++|+||+||||||||+++|++|+++|+++|+|||++|++||| |||++++++++++.+++
T Consensus 1 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~-Gld~~~l~~~~~~~~~~ 79 (217)
T cd05211 1 ATGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDP-GITTEELINYAVALGGS 79 (217)
T ss_pred CchhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECC-CCCHHHHHHHHHhhCCc
Confidence 69999999999999999989999999999999999999999999999999999999999999 99999999999988889
Q ss_pred ccCCCCeeecCCcccccccceEeecccCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEeccccccccCcee
Q 015287 264 NDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTV 343 (410)
Q Consensus 264 ~~~~~~~~i~~~~ll~~~~DvliPaA~~~~I~~~na~~i~akiIvEgAN~p~t~~A~~iL~~rGI~v~PD~laNaGGVi~ 343 (410)
..|+.++.+++++++..+||||+|||++|+||++|+.+++||+|+|+||+|+|++++++|++|||+|+||+++|+|||++
T Consensus 80 ~~~~~~~~~~~~~l~~~~~DVlipaA~~~~i~~~~a~~l~a~~V~e~AN~p~t~~a~~~L~~~Gi~v~Pd~~~NaGGvi~ 159 (217)
T cd05211 80 ARVKVQDYFPGEAILGLDVDIFAPCALGNVIDLENAKKLKAKVVAEGANNPTTDEALRILHERGIVVAPDIVANAGGVIV 159 (217)
T ss_pred cccCcccccCcccceeccccEEeeccccCccChhhHhhcCccEEEeCCCCCCCHHHHHHHHHCCcEEEChHHhcCCCeEe
Confidence 88887777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 015287 344 SYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVA 401 (410)
Q Consensus 344 s~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~ri~ 401 (410)
|||||+||.++++|++++|.++++++|.+++++|++.++++++++|+|||++|++||+
T Consensus 160 s~~E~~q~~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a~~rva 217 (217)
T cd05211 160 SYFEWVQNLQRLSWDAEEVRSKLEQVMTDIHNGVFAISERDGVTMRAAANILAFERIA 217 (217)
T ss_pred EHHHhcCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999985
No 13
>PF02812 ELFV_dehydrog_N: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; InterPro: IPR006097 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the dimerisation region of these enzymes.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 2BMA_C 1C1D_B 1BXG_A 1BW9_B 1C1X_A 2YFQ_B 3R3J_D 1V9L_C 1B26_C 2TMG_B ....
Probab=100.00 E-value=2.4e-48 Score=340.16 Aligned_cols=130 Identities=52% Similarity=0.895 Sum_probs=124.5
Q ss_pred CCeEEEEEEEEEeCCCceeEEEEEEEEeeCCCCCCCCCeeeecCCCHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCC
Q 015287 31 PFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPR 110 (410)
Q Consensus 31 p~r~~~v~~p~~~d~G~~~~~~G~rv~h~~~~GPakGGiR~~~~~~~~ev~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~ 110 (410)
|+|+++|+|||+||||+.+.|+|||||||+++||+||||||||++|.+|+++||++||||||+++||||||||||.+||+
T Consensus 1 pe~v~~~~~~~~~d~g~~~~~~g~~v~h~~~~GPa~GGiR~~~~~s~~ev~~LA~~MT~K~Al~~lp~GGaKggI~~dp~ 80 (131)
T PF02812_consen 1 PERVIQVRVPVVMDDGPITGLRGYRVQHSTARGPAKGGIRMHPYVSEEEVLRLARGMTYKCALAGLPFGGAKGGIKIDPK 80 (131)
T ss_dssp -SEEEEEEEEEEETTSCEEEEEEEEEEEE-SSSSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTTSS-EEEEEEEESSGG
T ss_pred CCEEEEEEEEEEeCCCCEEEEEEEEEEEcCCCCCCCCCeEEecCCCHHHHHHHHHHHHhhhhhccCCCCceeEEeecCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhh
Q 015287 111 ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKF 160 (410)
Q Consensus 111 ~~s~~e~e~~~r~f~~~l~~~iG~~~dipapDvgt~~~~m~wi~d~~~~~ 160 (410)
++|..|+|+++|+|+++|.+++|+..|||||||||+++||+||+|+|+++
T Consensus 81 ~~s~~e~e~l~r~f~~~l~~~i~~~~~i~a~Dvgt~~~dm~~i~~~~~~~ 130 (131)
T PF02812_consen 81 DLSDNERERLTRRFGRALSPFIGPGRDIPAPDVGTGERDMAWIADEYRRV 130 (131)
T ss_dssp GS-HHHHHHHHHHHHHHHGGGSBTTTEEEEBBTTBSHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHhccCcEEECCcCCCCHHHHHHHHHhchhc
Confidence 99999999999999999999999999999999999999999999999864
No 14
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=100.00 E-value=5.1e-44 Score=334.46 Aligned_cols=195 Identities=28% Similarity=0.444 Sum_probs=177.8
Q ss_pred CchhHHHHHHHHHHHHHHh--CCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHh
Q 015287 182 EAATGLGVFFATEALLAEH--GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKS 259 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~--g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~ 259 (410)
+.+|||||+++++++++++ +.+++|++|+|||||+||+++|+.|.+.|++|+ ++|.+ .+++.++++.
T Consensus 2 s~aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vv-v~D~~----------~~~~~~~~~~ 70 (200)
T cd01075 2 SPPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLI-VADIN----------EEAVARAAEL 70 (200)
T ss_pred CChhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEcCC----------HHHHHHHHHH
Confidence 4699999999999999975 778999999999999999999999999999999 88864 3555555543
Q ss_pred CCCcccCCCCeeecCCcccccccceEeecccCCcccccccccccceEEEecCCCCCC-HHHHHHHHhCCceEeccccccc
Q 015287 260 NKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTD-PEADEILSKKGVVILPDIYANS 338 (410)
Q Consensus 260 ~g~v~~~~~~~~i~~~~ll~~~~DvliPaA~~~~I~~~na~~i~akiIvEgAN~p~t-~~A~~iL~~rGI~v~PD~laNa 338 (410)
| +.+.+++++++..+|||++|||++++||++|+++++|++|+|+||+|+| ++++++|+++||+|+||+++|+
T Consensus 71 ------~-g~~~v~~~~l~~~~~Dv~vp~A~~~~I~~~~~~~l~~~~v~~~AN~~~~~~~~~~~L~~~Gi~~~Pd~~~Na 143 (200)
T cd01075 71 ------F-GATVVAPEEIYSVDADVFAPCALGGVINDDTIPQLKAKAIAGAANNQLADPRHGQMLHERGILYAPDYVVNA 143 (200)
T ss_pred ------c-CCEEEcchhhccccCCEEEecccccccCHHHHHHcCCCEEEECCcCccCCHhHHHHHHHCCCEEeCceeeeC
Confidence 1 3456777889999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred cCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 015287 339 GGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVA 401 (410)
Q Consensus 339 GGVi~s~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~ri~ 401 (410)
|||++||+||+|+. ++++.++++.+ .+++.+|++.+++++++||+|||.+|++||.
T Consensus 144 GGv~~~~~e~~~~~------~~~~~~~~~~~-~~~~~~v~~~a~~~~~~~~~aA~~~a~~r~~ 199 (200)
T cd01075 144 GGLINVADELYGGN------EARVLAKVEAI-YDTLLEIFAQAKQDGITTLEAADRMAEERIA 199 (200)
T ss_pred cCceeehhHHhCCc------HHHHHHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHHHHHHHhc
Confidence 99999999999863 67899999986 8999999999999999999999999999985
No 15
>smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase. Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.
Probab=99.97 E-value=1.1e-30 Score=219.67 Aligned_cols=100 Identities=43% Similarity=0.675 Sum_probs=96.1
Q ss_pred cceEeecccCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEeccccccccCceehhHHHhhhcccCCCCHHH
Q 015287 282 CDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEK 361 (410)
Q Consensus 282 ~DvliPaA~~~~I~~~na~~i~akiIvEgAN~p~t~~A~~iL~~rGI~v~PD~laNaGGVi~s~~E~~qn~~~~~w~~~~ 361 (410)
||||+|||++++||++|+++++||+|+||||+|+|++++++|++|||+|+||+++|+|||++||+||.|+.++ ++++
T Consensus 3 ~DI~~PcA~~~~I~~~~a~~l~a~~V~egAN~~~t~~a~~~L~~rGi~~~PD~~~NaGGvi~s~~E~~~~~~~---~~e~ 79 (102)
T smart00839 3 CDIFIPCALQNVINEANANRLGAKIIAEGANMPLTDEADDILEDRGVLYAPDFAANAGGVIVSALEMLQNLAR---TAEE 79 (102)
T ss_pred cCEEEeCCCcCcCCHHHHHHcCCeEEEecCCCCCCHHHHHHHHHCCCEEcCcceecCCCEEeehhhhhcccCC---CHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998774 8899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Q 015287 362 VNHELKRYMMSAFKDIKTMCQTH 384 (410)
Q Consensus 362 v~~~l~~~m~~~~~~v~~~a~~~ 384 (410)
|.+++.+.|.+++.++++.|+++
T Consensus 80 v~~~~~~~i~~~~~~v~~~a~~~ 102 (102)
T smart00839 80 VFTDLSEIMRNALEEIFETAQKY 102 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999998753
No 16
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=99.96 E-value=1.2e-27 Score=263.88 Aligned_cols=338 Identities=22% Similarity=0.240 Sum_probs=241.8
Q ss_pred cCCCHHHHHhccC--CCeEEEEEEEEEeCCCceeEEEEEEEEeeCCCCCCCCCeeeecCCC---HHHHHHHHHHHHHHHh
Q 015287 18 LGLDSKLERSLLI--PFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVD---PDEVNALAQLMTWKTA 92 (410)
Q Consensus 18 ~~~~~~~~~~l~~--p~r~~~v~~p~~~d~G~~~~~~G~rv~h~~~~GPakGGiR~~~~~~---~~ev~~LA~~Mt~K~A 92 (410)
+.++|..++-|.+ |.++|.|.= ..|+|++..+-.+ ++||+||+ +.. .+|++.|+..++.||
T Consensus 759 FK~dps~i~~lp~P~Py~eIFVyg---------~~vEGvHLRFg~V---ARGGLRws-DR~~D~rtEvlgLvKAQqvKN- 824 (1592)
T COG2902 759 FKFDPSLIDELPYPRPYREIFVYG---------PEVEGVHLRFGPV---ARGGLRWS-DRNQDFRTEVLGLVKAQQVKN- 824 (1592)
T ss_pred EEeChhhcCCCCCCCcceEEEEEc---------CcceEEEeecccc---cccccccc-ccchhHHHHHHHHHHHHHhcC-
Confidence 3578888887776 455555553 3479988665443 89999998 554 569999999999999
Q ss_pred hcCCCCCCceeEEecCC--CCCCHHHHH----HHHHHHHHHHhhcc-----C----CC------Cc----ccCCCCCCCH
Q 015287 93 VAAIPYGGAKGGIGCNP--RELSMSELE----RLTRVFTQKIHDLI-----G----IH------RD----VPAPDMGTNS 147 (410)
Q Consensus 93 l~~lp~GGaKggI~~dP--~~~s~~e~e----~~~r~f~~~l~~~i-----G----~~------~d----ipapDvgt~~ 147 (410)
+.||-+|||||+.+.+ ..-+..|+. ...+.|++.|.+++ + |. .| +-|||-||-
T Consensus 825 -avIvpvGAKGgf~~k~lp~g~~RD~i~~eg~~~Yk~Fi~~LlditDnii~~~vvpP~~vvr~d~dDpyLvVaaDKGTA- 902 (1592)
T COG2902 825 -AVIVPVGAKGGFLLKRLPTGGDRDAIFAEGIACYKAFISGLLDITDNIIDDQVVPPADVVRLDGDDPYLVVAADKGTA- 902 (1592)
T ss_pred -CcccccCCcceEecccCCCCCchHHHHHhhHHHHHHHHHHHHHHHHHhhcCCcCCChhhhhcCCCCCeEEEecCCCcc-
Confidence 5678899999998764 345555542 34556666664431 1 11 11 469999982
Q ss_pred HHHHHHHHHhhhhhCCCCceecCccccCCCCCCCC----chhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc----ChHHH
Q 015287 148 QTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRE----AATGLGVFFATEALLAEHGKSISNMKFAIQGF----GNVGS 219 (410)
Q Consensus 148 ~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~----~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf----GnVG~ 219 (410)
.--+|-- ...+-+ +|+-||.+..|||.|.+ +.|++|++++++..++++|.+++...+.+.|. |.|++
T Consensus 903 tFsD~AN-~vA~~~----~fwl~DAFaSGgS~GydHK~mGITarGaweaVkrhFrelg~d~Q~~~fTvvgiGdmsGDVfg 977 (1592)
T COG2902 903 TFSDIAN-SVAREY----GFWLGDAFASGGSAGYDHKKMGITARGAWEAVKRHFRELGLDTQTSPFTVVGIGDMSGDVFG 977 (1592)
T ss_pred cHHHHHH-HHHHHh----CCChhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHhcccCCCCceEEEeeCCCCccccc
Confidence 2233321 222223 46777888888887765 69999999999999999999988888888886 55666
Q ss_pred HHHHHHHHCCCEEEEEECCCCceeCC-CCCCHHHHHH---HHHhCCCcccCCCC--------------------------
Q 015287 220 WAAKFFHEHGGKVVAVSDITGAIKNP-NGIDVPALLK---YKKSNKSLNDFQGG-------------------------- 269 (410)
Q Consensus 220 ~~a~~L~~~GakvVaVsD~~G~i~~~-~GlDi~~l~~---~~~~~g~v~~~~~~-------------------------- 269 (410)
+ .+|..+-.++||+-|.++.++|| -++|...+.+ ....+.++.+|..+
T Consensus 978 N--gMLLS~~irLiAAfDhrhIFiDP~pd~a~S~~eR~RlF~lpRSsw~DYD~s~iS~gG~v~srs~K~I~Lspe~~~~l 1055 (1592)
T COG2902 978 N--GMLLSKHIRLIAAFDHRHIFIDPNPDLAVSFAERKRLFALPRSSWSDYDASKISKGGGVVSRSAKAITLSPEVIAAL 1055 (1592)
T ss_pred c--ceeccccceeeEEecCCceeeCCCCCccccHHHHHHHhcCCcCchhhcchhhcCCCCeEEEeeccccCCCHHHHHHh
Confidence 6 56667778899999999999999 6788776665 33345567776411
Q ss_pred ----eeecCCc----ccccc--------cceEeecccC-Ccccccccc--------cccceEEEecCCCCCCHHHHHHHH
Q 015287 270 ----NAMDLND----LLVHE--------CDVLVPCALG-GVLNKENAA--------DVKAKFIIEAANHPTDPEADEILS 324 (410)
Q Consensus 270 ----~~i~~~~----ll~~~--------~DvliPaA~~-~~I~~~na~--------~i~akiIvEgAN~p~t~~A~~iL~ 324 (410)
..++|.+ +|..| .|.+|||..+ |.++.+||+ +++||+|+||||..+|+.++-.+.
T Consensus 1056 gi~~~~~~P~elitAILKapvDLLw~GGIgTYVka~~etnA~vgDrANd~irv~g~e~raKvIgEGaNLgvTQ~gRief~ 1135 (1592)
T COG2902 1056 GIDKTELAPNELITAILKAPVDLLWNGGIGTYVKASGETNADVGDRANDAIRVNGEEVRAKVIGEGANLGVTQRGRIEFA 1135 (1592)
T ss_pred CCCccccChHHHHHHHHcCchhhhccCCCceeEecCCCccchhhcccchhhccccceeceeEEeecccccccchhHHHHH
Confidence 0122222 33433 5667888875 566655554 579999999999999999999999
Q ss_pred hCCceEeccccccccCceehhHHHhhhcc------cCCCCHHHHHHHHHHHHHHHHHHHHH
Q 015287 325 KKGVVILPDIYANSGGVTVSYFEWVQNIQ------GFMWEEEKVNHELKRYMMSAFKDIKT 379 (410)
Q Consensus 325 ~rGI~v~PD~laNaGGVi~s~~E~~qn~~------~~~w~~~~v~~~l~~~m~~~~~~v~~ 379 (410)
.+|..+.-|++.|+|||.+|..|..-.+- .-..+.++.+.-|+. |++.+.++..
T Consensus 1136 ~~Ggr~ntDaidNsaGVd~SD~EVniKIal~~a~~~g~l~~~~Rn~Llas-mtdeV~~lVl 1195 (1592)
T COG2902 1136 LAGGRINTDAIDNSAGVDCSDHEVNIKIALNSAVFAGKLTRGERNALLAS-MTDEVASLVL 1195 (1592)
T ss_pred HcCCeecchhhcccCCCcccchhhhhHHhhhhhhhcCCcchhhHHHHHHH-HHHHHHHHHH
Confidence 99999999999999999999999864431 224456677776666 6766666543
No 17
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=99.95 E-value=1.3e-26 Score=264.89 Aligned_cols=370 Identities=21% Similarity=0.224 Sum_probs=266.7
Q ss_pred CCCHHHHHhccCCCeEEEEEEEEEeCCCceeEEEEEEEEeeCCCCCCCCCeeeecCC--CHHHHHHHHHHHHHHHhhcCC
Q 015287 19 GLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEV--DPDEVNALAQLMTWKTAVAAI 96 (410)
Q Consensus 19 ~~~~~~~~~l~~p~r~~~v~~p~~~d~G~~~~~~G~rv~h~~~~GPakGGiR~~~~~--~~~ev~~LA~~Mt~K~Al~~l 96 (410)
.|+|..+..+..|....++.+- ..-|+|++..+..+ +.||+||+... -..||+.|+..|+.|| +.|
T Consensus 698 Kldp~~l~~~p~P~P~~eifV~-------s~~~eGvHLR~g~V---ARGGlRwSdR~eDfRtEvlgL~kaQ~vKN--avI 765 (1528)
T PF05088_consen 698 KLDPSFLPDLPEPRPYFEIFVY-------SPRFEGVHLRFGDV---ARGGLRWSDRPEDFRTEVLGLVKAQQVKN--AVI 765 (1528)
T ss_pred EEcHHHcCCCCCCCCcEEEEEE-------CCceEEEEcccccc---ccCcccccCCHHHHHHHHHHHHHHHHhcC--Ccc
Confidence 5788888888876555444321 24479999887665 89999996332 2579999999999999 667
Q ss_pred CCCCceeEEecCCCCC--CHHH----HHHHHHHHHHHHhhc---------cCCC------Cc----ccCCCCCCCHHHHH
Q 015287 97 PYGGAKGGIGCNPREL--SMSE----LERLTRVFTQKIHDL---------IGIH------RD----VPAPDMGTNSQTMA 151 (410)
Q Consensus 97 p~GGaKggI~~dP~~~--s~~e----~e~~~r~f~~~l~~~---------iG~~------~d----ipapDvgt~~~~m~ 151 (410)
|-||||||++++.... +..+ -...++.|++.|.++ +.|. .| |-|.|-|| ..+.
T Consensus 766 vp~GsKGgfv~k~~~~~~~r~~~~~~~~~~y~~fi~~lLd~TDN~~~g~vv~p~~vv~~D~dDpYLVVAADKGT--AtfS 843 (1528)
T PF05088_consen 766 VPVGSKGGFVVKQLPDPADRDAWQAEGIACYKTFIRALLDLTDNLVDGKVVPPPDVVRYDGDDPYLVVAADKGT--ATFS 843 (1528)
T ss_pred cCCCCceeEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCCCcceeecCCCCCceEeecCCCc--chHH
Confidence 9999999998864432 3332 234566677777655 2221 01 56999999 4444
Q ss_pred HHHHHhhhhhCCCCceecCccccCCCCCCCC----chhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHH--HHH
Q 015287 152 WILDEYSKFHGHSPAVVTGKPIDLGGSLGRE----AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAA--KFF 225 (410)
Q Consensus 152 wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~----~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a--~~L 225 (410)
=++.+.+.-+ ||+-|+.+..|||.|++ +.|++|.|.+++..++++|.++....+.|+|.|.++.-+. -+|
T Consensus 844 D~AN~ia~~~----gfWLgDAFASGGS~GYDHK~mGITArGAWesvkrHFrelg~D~q~~~fTvvGiGDMsGDVFGNGML 919 (1528)
T PF05088_consen 844 DIANEIAAEY----GFWLGDAFASGGSAGYDHKKMGITARGAWESVKRHFRELGIDIQTDPFTVVGIGDMSGDVFGNGML 919 (1528)
T ss_pred HHHHHHHHHc----CCCcchhhhcCCcCCCCchhhccchhhHHHHHHHHHHHhCCCcCCCceEEEEecCCCccccccchh
Confidence 4445544444 47889999999999986 6999999999999999999999988999999988887776 678
Q ss_pred HHCCCEEEEEECCCCceeCCCCCCHHHHH----HHHHh-CCCcccCCC------------------------------Ce
Q 015287 226 HEHGGKVVAVSDITGAIKNPNGIDVPALL----KYKKS-NKSLNDFQG------------------------------GN 270 (410)
Q Consensus 226 ~~~GakvVaVsD~~G~i~~~~GlDi~~l~----~~~~~-~g~v~~~~~------------------------------~~ 270 (410)
..+..|+||..|+.....||+- |++.-. ++++. +-++.+|.. ..
T Consensus 920 lS~~irLvaAF~H~hIFiDP~P-D~~~Sf~ER~RLF~lprSsW~DYd~~lIS~GGGVf~R~aKsI~lS~e~r~~lgi~~~ 998 (1528)
T PF05088_consen 920 LSRHIRLVAAFNHRHIFIDPDP-DPAASFAERKRLFELPRSSWADYDKSLISKGGGVFSRSAKSIPLSPEMRAALGIEKD 998 (1528)
T ss_pred cccceeEEEecCcceeecCcCC-ChhhhHHHHHHHhcCCCCChhhcCHHHhCCCCceeecccCCCCCCHHHHHHhCCCCC
Confidence 8888999999999999999997 654322 22332 235666641 11
Q ss_pred eecCCc----ccccccceEeecccCCccc---cc--------------ccccccceEEEecCCCCCCHHHHHHHHhCCce
Q 015287 271 AMDLND----LLVHECDVLVPCALGGVLN---KE--------------NAADVKAKFIIEAANHPTDPEADEILSKKGVV 329 (410)
Q Consensus 271 ~i~~~~----ll~~~~DvliPaA~~~~I~---~~--------------na~~i~akiIvEgAN~p~t~~A~~iL~~rGI~ 329 (410)
.++|+| +|..|+|+|+--.+|..|- +. |+.+++||+|+||+|..+|+.++-.+..+|..
T Consensus 999 ~~tp~eLi~aiL~apVDLlwnGGIGTYVKas~Es~~~vgDkaND~vRV~g~~lrakVvgEGgNLG~TQ~gRiE~a~~GGr 1078 (1528)
T PF05088_consen 999 SLTPDELIRAILKAPVDLLWNGGIGTYVKASTESHADVGDKANDAVRVNGSELRAKVVGEGGNLGLTQRGRIEYALNGGR 1078 (1528)
T ss_pred ccCHHHHHHHHhcCccceEecCCccceEecCCCcccccccccCcceeechHHceEEEEecccccccchHHHHHHHHcCCc
Confidence 234444 5789999999999988773 22 45668999999999999999999999999999
Q ss_pred EeccccccccCceehhHHHhhhc------ccCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHcC--C---CHHHHHHHHHH
Q 015287 330 ILPDIYANSGGVTVSYFEWVQNI------QGFMWEEEKVNHELKRYMMSAFKD-IKTMCQTHN--C---NLRMGAFTLGV 397 (410)
Q Consensus 330 v~PD~laNaGGVi~s~~E~~qn~------~~~~w~~~~v~~~l~~~m~~~~~~-v~~~a~~~~--~---~~r~aA~~~A~ 397 (410)
+--|++-||+||-+|-.|..-.+ ..-..+.++=++.|++ |++.+.+ |++-...+. + ..+...+.-..
T Consensus 1079 iNtDaiDNSaGVd~SDhEVNiKIll~~~~~~g~lt~~~Rn~lL~~-mtdeV~~lVL~~N~~Q~~alsl~~~~~~~~~~~~ 1157 (1528)
T PF05088_consen 1079 INTDAIDNSAGVDCSDHEVNIKILLNSLVRAGDLTRKERNKLLAS-MTDEVAELVLRDNYRQTLALSLAERRAAERLEEH 1157 (1528)
T ss_pred cchhhhcccCCCcCccchhhHHHHHHHHHHcCCCCHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHH
Confidence 99999999999999999974221 1123477777777777 6655544 333222221 1 12333445556
Q ss_pred HHHHHHHHHcC
Q 015287 398 NRVAQATLLRG 408 (410)
Q Consensus 398 ~ri~~a~~~rg 408 (410)
.|+.+.++.+|
T Consensus 1158 ~r~~~~Le~~g 1168 (1528)
T PF05088_consen 1158 QRLIERLEREG 1168 (1528)
T ss_pred HHHHHHHHhcC
Confidence 66766666655
No 18
>PRK08374 homoserine dehydrogenase; Provisional
Probab=99.33 E-value=1.8e-12 Score=130.70 Aligned_cols=171 Identities=22% Similarity=0.289 Sum_probs=115.8
Q ss_pred CeEEEEccChHHHHHHHHHHH--------CC--CEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCC---Ceeec
Q 015287 207 MKFAIQGFGNVGSWAAKFFHE--------HG--GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQG---GNAMD 273 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~--------~G--akvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~---~~~i~ 273 (410)
.+|+||||||||++++++|.+ .| .+|++|+|++|++|||+|+|++++++++++++.+..|+. ...++
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 689999999999999999976 45 799999999999999999999999999999888877752 22345
Q ss_pred CCccc-ccccceEeecccCCcccccccccccceEEEecCCCC------C---CHHHHHHHHhCCceEecccccccc-Cc-
Q 015287 274 LNDLL-VHECDVLVPCALGGVLNKENAADVKAKFIIEAANHP------T---DPEADEILSKKGVVILPDIYANSG-GV- 341 (410)
Q Consensus 274 ~~~ll-~~~~DvliPaA~~~~I~~~na~~i~akiIvEgAN~p------~---t~~A~~iL~~rGI~v~PD~laNaG-GV- 341 (410)
.++++ ..+|||+|.|. +.+++..+.++++.+|-+-- + -++..++.+++|+.+.- -+|.+ |+
T Consensus 83 ~~ell~~~~~DVvVd~t-----~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~--ea~v~~GiP 155 (336)
T PRK08374 83 PEEIVEEIDADIVVDVT-----NDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLF--EATVMAGTP 155 (336)
T ss_pred HHHHHhcCCCCEEEECC-----CcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEE--eccccccCC
Confidence 66777 58999999886 34566666555444443332 1 13344566778887762 33333 33
Q ss_pred eehhH-HHh-----hhcccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 015287 342 TVSYF-EWV-----QNIQGF-MWEEEKVNHELKRYMMSAFKDIKTMCQTHNC 386 (410)
Q Consensus 342 i~s~~-E~~-----qn~~~~-~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~ 386 (410)
+.+.+ +.+ +.+.+. .=+-.-+..++++ ...|.+++..|++.|.
T Consensus 156 ii~~l~~~l~g~~i~~i~GIlnGT~nyIl~~m~~--g~~f~eal~eAq~~Gy 205 (336)
T PRK08374 156 IIGLLRENLLGDTVKRIEAVVNATTTFILTRMEQ--GKTFEEALKEAQTLGI 205 (336)
T ss_pred chHHHHhhccccceEEEEEEEechHHHHHHHhhC--CCCHHHHHHHHHHcCC
Confidence 22222 111 001110 1123446666653 5679999999998885
No 19
>PRK06392 homoserine dehydrogenase; Provisional
Probab=99.24 E-value=2.1e-11 Score=122.36 Aligned_cols=83 Identities=25% Similarity=0.457 Sum_probs=68.5
Q ss_pred CeEEEEccChHHHHHHHHHHH--------CCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCccc
Q 015287 207 MKFAIQGFGNVGSWAAKFFHE--------HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL 278 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~--------~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll 278 (410)
++|+|+|||+||++++++|.+ .+.+||+|+|+++++|||+|||++++++++++ +++..++- ..++.++++
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~~-~~~~~~~ll 78 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEIDY-EKIKFDEIF 78 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCCC-CcCCHHHHh
Confidence 389999999999999999987 36899999999999999999999999998866 66655531 123456677
Q ss_pred ccccceEeecccC
Q 015287 279 VHECDVLVPCALG 291 (410)
Q Consensus 279 ~~~~DvliPaA~~ 291 (410)
..++||+|+|+-.
T Consensus 79 ~~~~DVvVE~t~~ 91 (326)
T PRK06392 79 EIKPDVIVDVTPA 91 (326)
T ss_pred cCCCCEEEECCCC
Confidence 7899999999843
No 20
>PRK06270 homoserine dehydrogenase; Provisional
Probab=98.90 E-value=1.1e-08 Score=103.50 Aligned_cols=177 Identities=23% Similarity=0.333 Sum_probs=112.0
Q ss_pred CeEEEEccChHHHHHHHHHHHC----------CCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCe-eecCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEH----------GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGN-AMDLN 275 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~----------GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~-~i~~~ 275 (410)
.+|+|+|||+||+.+++.|.+. +.+||+|+|+++.+|+++|+|++++.+..+..+.+..|++.. ..+.+
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 5899999999999999999765 589999999999999999999999998888777666665322 22445
Q ss_pred ccc-ccccceEeecccCCccccccccc-----c--cceEEEecCC-CCC---CHHHHHHHHhCCceEeccccccccCcee
Q 015287 276 DLL-VHECDVLVPCALGGVLNKENAAD-----V--KAKFIIEAAN-HPT---DPEADEILSKKGVVILPDIYANSGGVTV 343 (410)
Q Consensus 276 ~ll-~~~~DvliPaA~~~~I~~~na~~-----i--~akiIvEgAN-~p~---t~~A~~iL~~rGI~v~PD~laNaGGVi~ 343 (410)
+++ ..++||++.|...+.-+.+.+.. + +..+|++ | .|. -++..+..+++|+.+.-.-...+|==+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVta--NK~pla~~~~eL~~~A~~~g~~~~~ea~v~~glPii 160 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTS--NKGPLALAYKELKELAKKNGVRFRYEATVGGAMPII 160 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcC--CcHHHHhhHHHHHHHHHHcCCEEEEeeeeeechhHH
Confidence 666 46899999998654332222111 2 4556653 2 243 2455566778898775322222221122
Q ss_pred hhH-HHhhh-----ccc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 015287 344 SYF-EWVQN-----IQG-FMWEEEKVNHELKRYMMSAFKDIKTMCQTHNC 386 (410)
Q Consensus 344 s~~-E~~qn-----~~~-~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~ 386 (410)
..+ +.+.. +.+ +.=+-.-+..++++. ...|.+++..|++.|.
T Consensus 161 ~~l~~~l~g~~I~~I~GIlnGT~nyIl~~m~~~-g~~f~~al~~Aq~~G~ 209 (341)
T PRK06270 161 NLAKETLAGNDIKSIKGILNGTTNYILTRMEEE-GLSYEQALAEAQELGY 209 (341)
T ss_pred HHHHhhcccCceEEEEEEEeCcHHHHHHHHhhc-CCCHHHHHHHHHHcCC
Confidence 211 22111 001 011234456666321 4679999999998885
No 21
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.72 E-value=1.1e-07 Score=77.15 Aligned_cols=84 Identities=31% Similarity=0.370 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCc
Q 015287 184 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL 263 (410)
Q Consensus 184 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v 263 (410)
+||+|++..++...+..+.++++++++|+|+|++|+.+++.|.+.+.+.|.++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-------------------------
Confidence 4899999999999988888899999999999999999999999986555557766
Q ss_pred ccCCCCeeecCCcccccccceEeecccCCccccc--ccccccceEEEecC
Q 015287 264 NDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKE--NAADVKAKFIIEAA 311 (410)
Q Consensus 264 ~~~~~~~~i~~~~ll~~~~DvliPaA~~~~I~~~--na~~i~akiIvEgA 311 (410)
|++|+|.....+..+ +....+..+|++.|
T Consensus 56 -------------------di~i~~~~~~~~~~~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 -------------------DILVTATPAGVPVLEEATAKINEGAVVIDLA 86 (86)
T ss_pred -------------------CEEEEcCCCCCCchHHHHHhcCCCCEEEecC
Confidence 999999987766655 56666778887754
No 22
>PLN02700 homoserine dehydrogenase family protein
Probab=98.35 E-value=1.3e-06 Score=89.35 Aligned_cols=61 Identities=21% Similarity=0.316 Sum_probs=47.2
Q ss_pred CCeEEEEccChHHHHHHHHHHHC-------C--CEEEEEECCCCceeCCC----CCCHHHHHH---HHHhCCCcccC
Q 015287 206 NMKFAIQGFGNVGSWAAKFFHEH-------G--GKVVAVSDITGAIKNPN----GIDVPALLK---YKKSNKSLNDF 266 (410)
Q Consensus 206 g~~vaIqGfGnVG~~~a~~L~~~-------G--akvVaVsD~~G~i~~~~----GlDi~~l~~---~~~~~g~v~~~ 266 (410)
-.+|+|.|+|+||+.++++|.++ | .+|++|+|+++.++|++ |||++.+.+ .+.+...+..|
T Consensus 3 ~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~ 79 (377)
T PLN02700 3 KIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSAL 79 (377)
T ss_pred EEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhh
Confidence 35789999999999999998643 2 58999999999999965 999888776 33443444433
No 23
>PRK06813 homoserine dehydrogenase; Validated
Probab=98.29 E-value=1.7e-06 Score=87.77 Aligned_cols=175 Identities=18% Similarity=0.198 Sum_probs=93.8
Q ss_pred CeEEEEccChHHHHHHHHHHHCC----------CEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCc
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHG----------GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLND 276 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G----------akvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ 276 (410)
.+|+|.|||+||+.++++|.++. .+|++|+|+++.+++++|+|++.+++.......+..|. ...+++
T Consensus 3 i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~---~~~~~~ 79 (346)
T PRK06813 3 IKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYI---EHHPEE 79 (346)
T ss_pred eEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhh---ccChHH
Confidence 58999999999999999997532 58999999999999999999988665432211111111 111223
Q ss_pred cc--ccccceEeecccCCccccccccc-----ccceEEEecCCCC-C---CHHHHHHHHhCCceEeccccccccCc-eeh
Q 015287 277 LL--VHECDVLVPCALGGVLNKENAAD-----VKAKFIIEAANHP-T---DPEADEILSKKGVVILPDIYANSGGV-TVS 344 (410)
Q Consensus 277 ll--~~~~DvliPaA~~~~I~~~na~~-----i~akiIvEgAN~p-~---t~~A~~iL~~rGI~v~PD~laNaGGV-i~s 344 (410)
++ ..++||+|.|.-.+..+.+.+.. ++...=|=-||-. + .++..+.-+++|+.+.-.-.+- ||+ +..
T Consensus 80 ~~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasVg-gGiPiI~ 158 (346)
T PRK06813 80 RATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGATA-AALPTLD 158 (346)
T ss_pred HhcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeeee-eccchHH
Confidence 33 23689999986433333232222 1221111133332 2 1344445556666655432222 122 222
Q ss_pred hHHHhh------hcccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 015287 345 YFEWVQ------NIQGF-MWEEEKVNHELKRYMMSAFKDIKTMCQTHNC 386 (410)
Q Consensus 345 ~~E~~q------n~~~~-~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~ 386 (410)
.+.... .+.+. .=+-.-+..++.+. ...|.+++..|++.|.
T Consensus 159 ~l~~~~~g~~I~~i~GIlNGT~NyIL~~m~~~-g~~f~eal~~Aq~lGy 206 (346)
T PRK06813 159 IGQFSLAGCHIEKIEGILNGTTNYILTKMNEE-DITFEEALKEAQSKGI 206 (346)
T ss_pred HHhhhcccCcEEEEEEEEechHHHHHhhhhhc-CCCHHHHHHHHHHcCC
Confidence 221110 00010 00222344444321 3479999999998885
No 24
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=98.10 E-value=1.4e-05 Score=80.42 Aligned_cols=170 Identities=24% Similarity=0.293 Sum_probs=90.8
Q ss_pred CCCeEEEEccChHHHHHHHHHHHC----------CCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecC
Q 015287 205 SNMKFAIQGFGNVGSWAAKFFHEH----------GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDL 274 (410)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~----------GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~ 274 (410)
+-.+|+|.|||+||+.++++|.++ ..+|++|+|+++..+. ++|...+ ..+...+... .+.
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~--~~~~~~~-~~~~~~~~~~-------~~~ 71 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR--DLDLLNA-EVWTTDGALS-------LGD 71 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc--cccccch-hhheeccccc-------ccH
Confidence 346899999999999999999875 3589999999998775 4444333 3333222221 223
Q ss_pred CcccccccceEeecccCCccccccccc----ccceEEEecCCCC-CCH---HHHHHHHhCCceEeccccccccCc-eehh
Q 015287 275 NDLLVHECDVLVPCALGGVLNKENAAD----VKAKFIIEAANHP-TDP---EADEILSKKGVVILPDIYANSGGV-TVSY 345 (410)
Q Consensus 275 ~~ll~~~~DvliPaA~~~~I~~~na~~----i~akiIvEgAN~p-~t~---~A~~iL~~rGI~v~PD~laNaGGV-i~s~ 345 (410)
+.+...+.||++++...+.=+.+-+.. ++...-|=-||-+ ++. |..+.-+++|+.+.=..-+ +||+ +.+.
T Consensus 72 ~~~~~~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV-~gGiPiI~~ 150 (333)
T COG0460 72 EVLLDEDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATV-GGGIPIIKL 150 (333)
T ss_pred hhhccccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeee-ccCcchHHH
Confidence 445677899999997664433331111 2222222233433 221 2333344445444322111 1221 1111
Q ss_pred H-HHhhh-----ccc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 015287 346 F-EWVQN-----IQG-FMWEEEKVNHELKRYMMSAFKDIKTMCQTHNC 386 (410)
Q Consensus 346 ~-E~~qn-----~~~-~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~ 386 (410)
+ |.+.. +.+ +.=+-.-+..++++. ...|+++++.|++.|.
T Consensus 151 lr~~l~g~~I~~i~GIlNGT~NyIlt~m~~~-~~~f~dal~eAq~lGy 197 (333)
T COG0460 151 LRELLAGDEILSIRGILNGTTNYILTRMEEG-GLSFEDALAEAQELGY 197 (333)
T ss_pred HHhhcccCceEEEEEEEeccHHHHHHHHHcc-CCCHHHHHHHHHHcCC
Confidence 1 11100 000 001334566666663 1389999999999885
No 25
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.85 E-value=0.0001 Score=67.05 Aligned_cols=120 Identities=23% Similarity=0.360 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcc
Q 015287 185 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLN 264 (410)
Q Consensus 185 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~ 264 (410)
||.++..++. +..+.-+.|+++.|.|||.||+.+|+.|...|++|+ |+|.+ +-.+++....
T Consensus 5 ~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~-V~e~D----------Pi~alqA~~d----- 65 (162)
T PF00670_consen 5 TGQSLVDGIM---RATNLMLAGKRVVVIGYGKVGKGIARALRGLGARVT-VTEID----------PIRALQAAMD----- 65 (162)
T ss_dssp HHHHHHHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-EEE-EE-SS----------HHHHHHHHHT-----
T ss_pred cchhHHHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEE-EEECC----------hHHHHHhhhc-----
Confidence 4444443333 355777999999999999999999999999999998 99974 3333333322
Q ss_pred cCCCCeeecCCcccccccceEeecccC-CcccccccccccceEEE-ecCCCCCCHHHH-HHHHhCCce
Q 015287 265 DFQGGNAMDLNDLLVHECDVLVPCALG-GVLNKENAADVKAKFII-EAANHPTDPEAD-EILSKKGVV 329 (410)
Q Consensus 265 ~~~~~~~i~~~~ll~~~~DvliPaA~~-~~I~~~na~~i~akiIv-EgAN~p~t~~A~-~iL~~rGI~ 329 (410)
+| +..+-++.+ ..+||+|-|... ++|+.+-..+++=..|+ ...- .+.|.+ +.|++.++.
T Consensus 66 Gf---~v~~~~~a~-~~adi~vtaTG~~~vi~~e~~~~mkdgail~n~Gh--~d~Eid~~~L~~~~~~ 127 (162)
T PF00670_consen 66 GF---EVMTLEEAL-RDADIFVTATGNKDVITGEHFRQMKDGAILANAGH--FDVEIDVDALEANAVE 127 (162)
T ss_dssp T----EEE-HHHHT-TT-SEEEE-SSSSSSB-HHHHHHS-TTEEEEESSS--STTSBTHHHHHTCTSE
T ss_pred Cc---EecCHHHHH-hhCCEEEECCCCccccCHHHHHHhcCCeEEeccCc--CceeEeeccccccCcE
Confidence 23 222233443 378999988753 56788877777554443 2221 233332 346666543
No 26
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.79 E-value=0.00071 Score=59.72 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=77.8
Q ss_pred HHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCee
Q 015287 192 ATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNA 271 (410)
Q Consensus 192 ~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~ 271 (410)
+++.++++.+.+++++++.|.|.|++|+.+++.|.+.|...|.+.|.+ .+.+.+..++.+.- .. ....
T Consensus 5 g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~----------~~~~~~~~~~~~~~-~~-~~~~ 72 (155)
T cd01065 5 GFVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT----------LEKAKALAERFGEL-GI-AIAY 72 (155)
T ss_pred HHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC----------HHHHHHHHHHHhhc-cc-ceee
Confidence 445556666777889999999999999999999998874444477764 23333332221110 00 0011
Q ss_pred ecCCcccccccceEeecccCCcccccccc----cc-cceEEEecCCCCCCHHHHHHHHhCCceEecc
Q 015287 272 MDLNDLLVHECDVLVPCALGGVLNKENAA----DV-KAKFIIEAANHPTDPEADEILSKKGVVILPD 333 (410)
Q Consensus 272 i~~~~ll~~~~DvliPaA~~~~I~~~na~----~i-~akiIvEgAN~p~t~~A~~iL~~rGI~v~PD 333 (410)
.+.++. -.++|++|-|.-....+.++.. .+ .-++|++-+-.|...+..+.++++|+.++|.
T Consensus 73 ~~~~~~-~~~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g 138 (155)
T cd01065 73 LDLEEL-LAEADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDG 138 (155)
T ss_pred cchhhc-cccCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCC
Confidence 122232 3579999999865554111111 11 3457777765564337778899999987754
No 27
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=97.67 E-value=0.00011 Score=82.51 Aligned_cols=180 Identities=14% Similarity=0.167 Sum_probs=97.3
Q ss_pred HhCCCCCCCeEEEEccChHHHHHHHHHHHC---------CCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCC
Q 015287 199 EHGKSISNMKFAIQGFGNVGSWAAKFFHEH---------GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGG 269 (410)
Q Consensus 199 ~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~---------GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~ 269 (410)
.+-.+-+..+|+|.|||+||+.++++|.++ ..+|++|+|+++.+++|+|+|++.+.+..+... ..+...
T Consensus 458 ~f~~~~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~ 535 (819)
T PRK09436 458 SFFLSDQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAG--EPFDLD 535 (819)
T ss_pred HHhcccccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhcc--CCCCHH
Confidence 333444678999999999999999999643 357999999999999999999987665444321 111000
Q ss_pred eeecCCccc---ccccceEeecccCCcccccccccccceEEEecCCCC-CC------HHHHHHHHhCCceEecccccccc
Q 015287 270 NAMDLNDLL---VHECDVLVPCALGGVLNKENAADVKAKFIIEAANHP-TD------PEADEILSKKGVVILPDIYANSG 339 (410)
Q Consensus 270 ~~i~~~~ll---~~~~DvliPaA~~~~I~~~na~~i~akiIvEgAN~p-~t------~~A~~iL~~rGI~v~PD~laNaG 339 (410)
..+ +++ ..+.||+|.|.-+..+...-...++...=|=-||-. .+ ++..+..+++|+.+...--+ +|
T Consensus 536 ~~~---~~~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~yeatV-~~ 611 (819)
T PRK09436 536 RLI---RLVKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFLYETNV-GA 611 (819)
T ss_pred HHH---HHHhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEEEeeee-cc
Confidence 000 111 235688888875443322211222222222234443 22 33344556677766543222 12
Q ss_pred Cc--eehhHHHhh---hc---ccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 015287 340 GV--TVSYFEWVQ---NI---QGF-MWEEEKVNHELKRYMMSAFKDIKTMCQTHNC 386 (410)
Q Consensus 340 GV--i~s~~E~~q---n~---~~~-~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~ 386 (410)
|+ |.+.-+.++ ++ .+. .=+-.-+..++++ ...|.+++..|++.|.
T Consensus 612 giPii~~l~~~~~~g~~i~~i~GilnGT~nyIl~~~~~--g~~f~~al~~Aq~~Gy 665 (819)
T PRK09436 612 GLPVIETLQNLLNAGDELLKFEGILSGSLSFIFGKLDE--GMSFSEATRLAKEKGY 665 (819)
T ss_pred ccchHHHHHHHHhccCcEEEEEEEEeChHHHHhhhhhc--CCCHHHHHHHHHHcCC
Confidence 22 222222221 00 110 0022234444443 3568888888888775
No 28
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.65 E-value=0.00048 Score=68.27 Aligned_cols=126 Identities=23% Similarity=0.315 Sum_probs=84.6
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNK 261 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g 261 (410)
...|+.+.+. .+++..+.++.|++|.|.|+|.+|+.+|+.|...|++|+ +.|.+. +.+.+..+. +
T Consensus 130 ~~~~Ae~ai~---~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~-v~~R~~----------~~~~~~~~~-g 194 (287)
T TIGR02853 130 SIPTAEGAIM---MAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVF-VGARSS----------ADLARITEM-G 194 (287)
T ss_pred cHhHHHHHHH---HHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEE-EEeCCH----------HHHHHHHHC-C
Confidence 3466776643 444556778999999999999999999999999999987 777642 222222111 1
Q ss_pred CcccCCCCeeecCCcc--cccccceEeecccCCccccccccccc-ceEEEecCCCCC-CHHHHHHHHhCCceEe
Q 015287 262 SLNDFQGGNAMDLNDL--LVHECDVLVPCALGGVLNKENAADVK-AKFIIEAANHPT-DPEADEILSKKGVVIL 331 (410)
Q Consensus 262 ~v~~~~~~~~i~~~~l--l~~~~DvliPaA~~~~I~~~na~~i~-akiIvEgAN~p~-t~~A~~iL~~rGI~v~ 331 (410)
...++.+++ +-.++|++|-|.-...++++....++ -.+|++-+..|- |+= +..+++|+..+
T Consensus 195 -------~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~Pg~tdf--~~Ak~~G~~a~ 259 (287)
T TIGR02853 195 -------LIPFPLNKLEEKVAEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKPGGTDF--EYAKKRGIKAL 259 (287)
T ss_pred -------CeeecHHHHHHHhccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCCCCCCH--HHHHHCCCEEE
Confidence 112222222 12489999998755667776666554 358899998884 433 57789998765
No 29
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.46 E-value=0.0025 Score=63.17 Aligned_cols=168 Identities=20% Similarity=0.272 Sum_probs=97.1
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeee-cCCccccc--ccc
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVH--ECD 283 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i-~~~~ll~~--~~D 283 (410)
++|.|+|+|++|+.+|+.|.+.|.+|+ +.|.+ .+.+.+..+. + .... +++++.+. .+|
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~-v~dr~----------~~~~~~~~~~-g-------~~~~~~~~e~~~~~~~~d 61 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVV-GYDRN----------PEAVEALAEE-G-------ATGADSLEELVAKLPAPR 61 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEE-EEECC----------HHHHHHHHHC-C-------CeecCCHHHHHhhcCCCC
Confidence 379999999999999999999999986 66664 2333333222 1 1111 33444432 468
Q ss_pred eEeecccCCccccccc----ccc-cceEEEecCCCC--CCHHHHHHHHhCCceEeccccccccCcee---------h---
Q 015287 284 VLVPCALGGVLNKENA----ADV-KAKFIIEAANHP--TDPEADEILSKKGVVILPDIYANSGGVTV---------S--- 344 (410)
Q Consensus 284 vliPaA~~~~I~~~na----~~i-~akiIvEgAN~p--~t~~A~~iL~~rGI~v~PD~laNaGGVi~---------s--- 344 (410)
+++-|.-......+.. ..+ .-++|++..+.. .+.+..+.++++|+.++ | ...+||+.. +
T Consensus 62 vvi~~v~~~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~-d-apvsG~~~~a~~g~~~~~gG~~ 139 (301)
T PRK09599 62 VVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFV-D-VGTSGGVWGLERGYCLMIGGDK 139 (301)
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEE-e-CCCCcCHHHHhcCCeEEecCCH
Confidence 7766643332222222 222 235777776654 35566788999999998 6 556666421 1
Q ss_pred -hHHHhhhc----cc-----CCC--------CHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHH
Q 015287 345 -YFEWVQNI----QG-----FMW--------EEEKVNHELKRYMMSAFKDIKTMCQT--HNCNLRMGAFTL 395 (410)
Q Consensus 345 -~~E~~qn~----~~-----~~w--------~~~~v~~~l~~~m~~~~~~v~~~a~~--~~~~~r~aA~~~ 395 (410)
.+|-++.+ .. ..+ ..+.++.-+...+...+.+-+..+++ .|+++.+...++
T Consensus 140 ~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~ 210 (301)
T PRK09599 140 EAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVW 210 (301)
T ss_pred HHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 12222221 10 000 01234444444555677888888888 888877766554
No 30
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=97.44 E-value=0.00026 Score=79.32 Aligned_cols=177 Identities=16% Similarity=0.171 Sum_probs=98.6
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHC--------C--CEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeee
Q 015287 203 SISNMKFAIQGFGNVGSWAAKFFHEH--------G--GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM 272 (410)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~--------G--akvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i 272 (410)
+.+-.+|+|.|||+||+.++++|.++ | .+|++|+|+++.+++++|+|...+.+..+... ..++ ...+
T Consensus 455 ~~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~--~~~~-~~~~ 531 (810)
T PRK09466 455 AEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEA--VEWD-EESL 531 (810)
T ss_pred cCceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhc--CCcc-HHHH
Confidence 44567899999999999999999653 3 58999999999999999999887776554321 1111 0000
Q ss_pred cCCccc---ccccceEeecccCCcccccccccccceEEEecCCCCC-C------HHHHHHHHhCCceEeccccccccCce
Q 015287 273 DLNDLL---VHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPT-D------PEADEILSKKGVVILPDIYANSGGVT 342 (410)
Q Consensus 273 ~~~~ll---~~~~DvliPaA~~~~I~~~na~~i~akiIvEgAN~p~-t------~~A~~iL~~rGI~v~PD~laNaGGVi 342 (410)
-+++ ..+.+|+|.|.-+..+...-...+++..=|=-||-.. + ++..+.-+++|+.+...--+.+|=-+
T Consensus 532 --~e~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV~~giPi 609 (810)
T PRK09466 532 --FLWLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATVGAGLPI 609 (810)
T ss_pred --HHHHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEeceeeeccCh
Confidence 0122 2234699999754433222223344443344566531 1 23334556788887644322222112
Q ss_pred ehhHHHhhh-------cccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 015287 343 VSYFEWVQN-------IQGF-MWEEEKVNHELKRYMMSAFKDIKTMCQTHNC 386 (410)
Q Consensus 343 ~s~~E~~qn-------~~~~-~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~ 386 (410)
...+.-+.+ +.+. .=+-.-+.+++++ ...|.+++..|++.|.
T Consensus 610 i~~l~~l~~~gd~i~~i~GIlnGT~nyi~~~~~~--g~~f~eal~~Aq~~Gy 659 (810)
T PRK09466 610 NHTVRDLRNSGDSILAISGIFSGTLSWLFLQFDG--SVPFSELVDQAWQQGL 659 (810)
T ss_pred HHHHHHHHhccCcEEEEEEEEccHHHHHHHHHhc--CCCHHHHHHHHHHcCC
Confidence 111111110 0000 0011224444443 4678888889988875
No 31
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.40 E-value=0.0012 Score=65.67 Aligned_cols=126 Identities=23% Similarity=0.292 Sum_probs=77.5
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNK 261 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g 261 (410)
..+|+.| ++..+++..+.++.+++|.|.|+|.+|+.++..|...|++|+ +.|.+ .+.+... ++.+
T Consensus 131 s~~~aeg---av~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~-v~~r~----------~~~~~~~-~~~G 195 (296)
T PRK08306 131 SIPTAEG---AIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKALGANVT-VGARK----------SAHLARI-TEMG 195 (296)
T ss_pred cHhHHHH---HHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHHH-HHcC
Confidence 3466777 444566677788899999999999999999999999999887 66764 1222221 1111
Q ss_pred CcccCCCCeeecCCccc--ccccceEeecccCCccccccccccc-ceEEEecCCCCC-CHHHHHHHHhCCceEe
Q 015287 262 SLNDFQGGNAMDLNDLL--VHECDVLVPCALGGVLNKENAADVK-AKFIIEAANHPT-DPEADEILSKKGVVIL 331 (410)
Q Consensus 262 ~v~~~~~~~~i~~~~ll--~~~~DvliPaA~~~~I~~~na~~i~-akiIvEgAN~p~-t~~A~~iL~~rGI~v~ 331 (410)
.+.+..+++- -.++|++|-|.-...++++-...++ -.+|++-|..|- |.- +..+++||.++
T Consensus 196 -------~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd~--~~a~~~Gv~~~ 260 (296)
T PRK08306 196 -------LSPFHLSELAEEVGKIDIIFNTIPALVLTKEVLSKMPPEALIIDLASKPGGTDF--EYAEKRGIKAL 260 (296)
T ss_pred -------CeeecHHHHHHHhCCCCEEEECCChhhhhHHHHHcCCCCcEEEEEccCCCCcCe--eehhhCCeEEE
Confidence 1222112221 1379999988644556655444442 246666666652 211 23466777665
No 32
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.28 E-value=0.0068 Score=62.46 Aligned_cols=130 Identities=22% Similarity=0.265 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCc
Q 015287 184 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL 263 (410)
Q Consensus 184 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v 263 (410)
+.+-=++..+-.+.+..|.+++|+||.|.|+|++|+.+|+.|...|.+|++ .|.... +. +.
T Consensus 94 aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~-~dp~~~---~~--------------~~- 154 (378)
T PRK15438 94 AVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLL-CDPPRA---DR--------------GD- 154 (378)
T ss_pred HHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEE-ECCccc---cc--------------cc-
Confidence 444444455555556678889999999999999999999999999999984 454210 00 00
Q ss_pred ccCCCCeeecCCcccccccceEeecc---------cCCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCce-E
Q 015287 264 NDFQGGNAMDLNDLLVHECDVLVPCA---------LGGVLNKENAADVK-AKFIIEAANHPT-DPEAD-EILSKKGVV-I 330 (410)
Q Consensus 264 ~~~~~~~~i~~~~ll~~~~DvliPaA---------~~~~I~~~na~~i~-akiIvEgAN~p~-t~~A~-~iL~~rGI~-v 330 (410)
.....+-++++ .+|||++-+. ..+.|+++....++ -.+++..+-+++ +.+|- +.|++.-+. .
T Consensus 155 ----~~~~~~L~ell-~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga 229 (378)
T PRK15438 155 ----EGDFRSLDELV-QEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSV 229 (378)
T ss_pred ----ccccCCHHHHH-hhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEE
Confidence 00112334555 3588888443 12446666666665 458888998884 55553 667766553 4
Q ss_pred ecccccc
Q 015287 331 LPDIYAN 337 (410)
Q Consensus 331 ~PD~laN 337 (410)
+=|+.-+
T Consensus 230 ~LDV~e~ 236 (378)
T PRK15438 230 VLDVWEG 236 (378)
T ss_pred EEecCCC
Confidence 4454443
No 33
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.27 E-value=0.0011 Score=69.86 Aligned_cols=107 Identities=19% Similarity=0.343 Sum_probs=68.3
Q ss_pred HHHHHHH-HHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCccc
Q 015287 187 LGVFFAT-EALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLND 265 (410)
Q Consensus 187 ~Gv~~~~-~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~ 265 (410)
+|...++ ...++..+..+.|++|+|.|+|++|+.+|+.|...|++|+ ++|.+. .........
T Consensus 234 ~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~Vi-V~e~dp----------~~a~~A~~~------ 296 (476)
T PTZ00075 234 YGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVV-VTEIDP----------ICALQAAME------ 296 (476)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCCc----------hhHHHHHhc------
Confidence 4443333 4445556778999999999999999999999999999987 666532 111111111
Q ss_pred CCCCeeecCCcccccccceEeeccc-CCcccccccccccce-EEEecCCC
Q 015287 266 FQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAK-FIIEAANH 313 (410)
Q Consensus 266 ~~~~~~i~~~~ll~~~~DvliPaA~-~~~I~~~na~~i~ak-iIvEgAN~ 313 (410)
+.+..+-++++ ..+||++.|.. .+.|+.+....++-. +|+..+-+
T Consensus 297 --G~~~~~leell-~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 297 --GYQVVTLEDVV-ETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred --CceeccHHHHH-hcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCC
Confidence 12222334444 37999999864 457787777766543 55544443
No 34
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.23 E-value=0.013 Score=60.93 Aligned_cols=184 Identities=21% Similarity=0.283 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccC
Q 015287 187 LGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDF 266 (410)
Q Consensus 187 ~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~ 266 (410)
-++..+.-+.+++.-.+|++++|.|+|.|.+|.-+|+.|.++|.+-|.|+..+ .+...+..++-+
T Consensus 159 VSi~saAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT----------~erA~~La~~~~----- 223 (414)
T COG0373 159 VSISSAAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRT----------LERAEELAKKLG----- 223 (414)
T ss_pred cchHHHHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCC----------HHHHHHHHHHhC-----
Confidence 34555555556554455999999999999999999999999998777798874 455555554432
Q ss_pred CCCeeecCCcccc--cccceEeec--ccCCcccccccccc-cc---eEEEecCCCC-CCHHHHHHHHhCCceEecccccc
Q 015287 267 QGGNAMDLNDLLV--HECDVLVPC--ALGGVLNKENAADV-KA---KFIIEAANHP-TDPEADEILSKKGVVILPDIYAN 337 (410)
Q Consensus 267 ~~~~~i~~~~ll~--~~~DvliPa--A~~~~I~~~na~~i-~a---kiIvEgAN~p-~t~~A~~iL~~rGI~v~PD~laN 337 (410)
++.++-+++.+ .++||+|-| |...+|+.++.... +. .+|++-||.+ +.|+... | .||.+.
T Consensus 224 --~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRdie~~v~~-l--~~v~l~------ 292 (414)
T COG0373 224 --AEAVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRDVEPEVGE-L--PNVFLY------ 292 (414)
T ss_pred --CeeecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCCCCccccC-c--CCeEEE------
Confidence 34444455543 489999998 56788998887764 22 3999999866 3443211 0 112110
Q ss_pred ccCceehhHHHh--hhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHH
Q 015287 338 SGGVTVSYFEWV--QNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNC-----NLRMGAFTLGVNRVAQAT 404 (410)
Q Consensus 338 aGGVi~s~~E~~--qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~-----~~r~aA~~~A~~ri~~a~ 404 (410)
.+.-++-+ .|.. ..++...+.+.++.+.+.+.++.-+...+ .+|.-|..+..+-+.++.
T Consensus 293 ----~iDDL~~iv~~n~~----~R~~~~~~ae~iIeee~~~~~~~l~~~~~~~~i~~lr~~a~~v~~~ele~a~ 358 (414)
T COG0373 293 ----TIDDLEEIVEENLE----ARKEEAAKAEAIIEEELAEFMEWLKKLEVVPTIRALREQAEDVREEELEKAL 358 (414)
T ss_pred ----ehhhHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111 1111 23445556677777777777777777765 344444444444444443
No 35
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.21 E-value=0.0035 Score=60.04 Aligned_cols=136 Identities=24% Similarity=0.284 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCE--EEEEECCCCceeCCCCCCHHHH-HHHHHhCC
Q 015287 185 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGK--VVAVSDITGAIKNPNGIDVPAL-LKYKKSNK 261 (410)
Q Consensus 185 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Gak--vVaVsD~~G~i~~~~GlDi~~l-~~~~~~~g 261 (410)
|+-=+..++..+++..+.+++++||.|.|.|.+|+.+++.|.+.|.+ -+-+.|++|-++....-++..- .++.+...
T Consensus 4 t~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~ 83 (226)
T cd05311 4 TAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETN 83 (226)
T ss_pred hHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhc
Confidence 44444555566777778889999999999999999999999999987 5569999987765443111111 22222211
Q ss_pred CcccCCCCeeecCCcccccccceEeecccCCcccccccccc-cceEEEecCCCCC-CHHHHHHHHhCCc
Q 015287 262 SLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADV-KAKFIIEAANHPT-DPEADEILSKKGV 328 (410)
Q Consensus 262 ~v~~~~~~~~i~~~~ll~~~~DvliPaA~~~~I~~~na~~i-~akiIvEgAN~p~-t~~A~~iL~~rGI 328 (410)
. . .. ..+-.+.+. ++|++|=|.-.+.++++..+.+ +-.+|..-. +|+ |+-. +...+.|.
T Consensus 84 ~-~---~~-~~~l~~~l~-~~dvlIgaT~~G~~~~~~l~~m~~~~ivf~ls-nP~~e~~~-~~A~~~ga 144 (226)
T cd05311 84 P-E---KT-GGTLKEALK-GADVFIGVSRPGVVKKEMIKKMAKDPIVFALA-NPVPEIWP-EEAKEAGA 144 (226)
T ss_pred c-C---cc-cCCHHHHHh-cCCEEEeCCCCCCCCHHHHHhhCCCCEEEEeC-CCCCcCCH-HHHHHcCC
Confidence 0 0 00 011112232 5899999988888887776655 334777666 564 3322 33344566
No 36
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.11 E-value=0.0016 Score=67.94 Aligned_cols=99 Identities=19% Similarity=0.303 Sum_probs=65.7
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNK 261 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g 261 (410)
...||.|++.+++.+. +..+.|++|+|.|+|++|+.+|+.|...|++|+ |+|.+. ....+....
T Consensus 191 ~~gt~~s~~~ai~rat---~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~Vi-V~d~dp----------~ra~~A~~~-- 254 (425)
T PRK05476 191 RYGTGESLLDGIKRAT---NVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVI-VTEVDP----------ICALQAAMD-- 254 (425)
T ss_pred cHHHHhhhHHHHHHhc---cCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEcCCc----------hhhHHHHhc--
Confidence 3568888877765432 556899999999999999999999999999987 777642 122221111
Q ss_pred CcccCCCCeeecCCcccccccceEeeccc-CCccccccccccc
Q 015287 262 SLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVK 303 (410)
Q Consensus 262 ~v~~~~~~~~i~~~~ll~~~~DvliPaA~-~~~I~~~na~~i~ 303 (410)
++ ...+.++++. .+||+|+|.. .+.|+.+....++
T Consensus 255 ---G~---~v~~l~eal~-~aDVVI~aTG~~~vI~~~~~~~mK 290 (425)
T PRK05476 255 ---GF---RVMTMEEAAE-LGDIFVTATGNKDVITAEHMEAMK 290 (425)
T ss_pred ---CC---EecCHHHHHh-CCCEEEECCCCHHHHHHHHHhcCC
Confidence 11 1222234443 7999999973 3567765555553
No 37
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=97.09 E-value=0.0039 Score=64.39 Aligned_cols=125 Identities=24% Similarity=0.308 Sum_probs=91.0
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCE---EEEEECCCCceeCCC-CCCHH-HHHHH
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGK---VVAVSDITGAIKNPN-GIDVP-ALLKY 256 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Gak---vVaVsD~~G~i~~~~-GlDi~-~l~~~ 256 (410)
..-||-=+..++-.+++..|++|+..+|++.|.|..|-+++++|.+.|.+ |+ ++|++|.+|+.. -++.. ....+
T Consensus 175 qqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~-~~D~~G~l~~~r~~~~~~~~k~~~ 253 (432)
T COG0281 175 QQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIF-VVDRKGLLYDGREDLTMNQKKYAK 253 (432)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEE-EEecCCcccCCCcccccchHHHHH
Confidence 35688888888899999999999999999999999999999999999985 55 999999999633 22111 11111
Q ss_pred H-HhCCCcccCCCCeeecCCcccccccceEeecccCCcccccccccccc-eEEEecCCCCCCHHH
Q 015287 257 K-KSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKA-KFIIEAANHPTDPEA 319 (410)
Q Consensus 257 ~-~~~g~v~~~~~~~~i~~~~ll~~~~DvliPaA~~~~I~~~na~~i~a-kiIvEgAN~p~t~~A 319 (410)
. +.++.. .. +..-..+||||=|+..+++|++-++.... .+|---|| |+ ||+
T Consensus 254 a~~~~~~~--------~~--~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~PiIfalaN-P~-pEi 306 (432)
T COG0281 254 AIEDTGER--------TL--DLALAGADVLIGVSGVGAFTEEMVKEMAKHPIIFALAN-PT-PEI 306 (432)
T ss_pred HHhhhccc--------cc--cccccCCCEEEEcCCCCCcCHHHHHHhccCCEEeecCC-CC-ccC
Confidence 1 111111 11 22456899999999999999998887644 47777777 44 444
No 38
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.04 E-value=0.0021 Score=57.99 Aligned_cols=106 Identities=27% Similarity=0.349 Sum_probs=65.9
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeee-cCCcccccccceE
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECDVL 285 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~Dvl 285 (410)
++|.++|+|++|+.+|+.|.++|..|. +-|.+ .+.+.+..+.. .... ++.++ -..||++
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~-~~d~~----------~~~~~~~~~~g--------~~~~~s~~e~-~~~~dvv 61 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVT-VYDRS----------PEKAEALAEAG--------AEVADSPAEA-AEQADVV 61 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEE-EEESS----------HHHHHHHHHTT--------EEEESSHHHH-HHHBSEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEE-eeccc----------hhhhhhhHHhh--------hhhhhhhhhH-hhcccce
Confidence 589999999999999999999999987 55643 45555554442 2222 22333 3467998
Q ss_pred eecccCCc-----ccccc-cccc-cceEEEecCCCC--CCHHHHHHHHhCCceEec
Q 015287 286 VPCALGGV-----LNKEN-AADV-KAKFIIEAANHP--TDPEADEILSKKGVVILP 332 (410)
Q Consensus 286 iPaA~~~~-----I~~~n-a~~i-~akiIvEgAN~p--~t~~A~~iL~~rGI~v~P 332 (410)
+-|-.... +..++ +..+ +-++|++..+.. .+.+..+.++++|+.|+=
T Consensus 62 i~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vd 117 (163)
T PF03446_consen 62 ILCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVD 117 (163)
T ss_dssp EE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEE
T ss_pred EeecccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeee
Confidence 88754322 22222 2222 567999888764 255667889999998873
No 39
>PRK12861 malic enzyme; Reviewed
Probab=97.02 E-value=0.01 Score=66.09 Aligned_cols=179 Identities=21% Similarity=0.233 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCccccCCCCCCCCchhHHHHHHHHHHHH
Q 015287 118 ERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGLGVFFATEALL 197 (410)
Q Consensus 118 e~~~r~f~~~l~~~iG~~~dipapDvgt~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~~ 197 (410)
+.|. .|++++.+-.|. |-=+|+.... ---+.++|+... .-|+. .+...-||-=+..++..++
T Consensus 119 d~~v-~~v~a~~~~fg~---i~lED~~~p~--~f~il~~~~~~~--------~ipvf----~DD~qGTa~v~lA~llnal 180 (764)
T PRK12861 119 DKLV-DIIAGLEPTFGG---INLEDIKAPE--CFTVERKLRERM--------KIPVF----HDDQHGTAITVSAAFINGL 180 (764)
T ss_pred HHHH-HHHHHHHhhcCC---ceeeeccCch--HHHHHHHHHhcC--------CCCee----ccccchHHHHHHHHHHHHH
Confidence 4566 788888776654 3335665431 223456665411 11221 1233568888888888999
Q ss_pred HHhCCCCCCCeEEEEccChHHHHHHHHHHHCCC---EEEEEECCCCceeCCC--CCCHHHHHHHHHhCCCcccCCCCeee
Q 015287 198 AEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG---KVVAVSDITGAIKNPN--GIDVPALLKYKKSNKSLNDFQGGNAM 272 (410)
Q Consensus 198 ~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga---kvVaVsD~~G~i~~~~--GlDi~~l~~~~~~~g~v~~~~~~~~i 272 (410)
+..|.+++..||++.|.|..|.+++++|.+.|. +|+ ++|++|.+|... .++..+. .+.+.. + ..
T Consensus 181 ~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~-~~D~~Gli~~~r~~~l~~~k~-~~a~~~----~-----~~ 249 (764)
T PRK12861 181 KVVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIW-VTDIEGVVYRGRTTLMDPDKE-RFAQET----D-----AR 249 (764)
T ss_pred HHhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEE-EEcCCCeeeCCCcccCCHHHH-HHHhhc----C-----CC
Confidence 988999999999999999999999999999998 576 999999999754 2543222 122211 1 01
Q ss_pred cCCcccccccceEeecccCCcccccccccccc-eEEEecCCCC--CCHHHHHHHHhCCc
Q 015287 273 DLNDLLVHECDVLVPCALGGVLNKENAADVKA-KFIIEAANHP--TDPEADEILSKKGV 328 (410)
Q Consensus 273 ~~~~ll~~~~DvliPaA~~~~I~~~na~~i~a-kiIvEgAN~p--~t~~A~~iL~~rGI 328 (410)
+-.|.+.. +||||=++.++.+|++-++.... .+|---||-- +||+ +....+|-
T Consensus 250 ~L~eai~~-advliG~S~~g~ft~e~v~~Ma~~PIIFaLsNPtpE~~pe--~a~~~~g~ 305 (764)
T PRK12861 250 TLAEVIGG-ADVFLGLSAGGVLKAEMLKAMAARPLILALANPTPEIFPE--LAHATRDD 305 (764)
T ss_pred CHHHHHhc-CCEEEEcCCCCCCCHHHHHHhccCCEEEECCCCCccCCHH--HHHhcCCC
Confidence 22344443 69999999899999998887644 4777777732 3554 33444443
No 40
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.02 E-value=0.004 Score=57.13 Aligned_cols=109 Identities=21% Similarity=0.352 Sum_probs=67.9
Q ss_pred CCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCccccc
Q 015287 201 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH 280 (410)
Q Consensus 201 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~ 280 (410)
+.++.|+||.|.|+|++|+.+|+.|...|++|++ .|.+.. + .. .... .+....+-++++.
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~-~d~~~~-------~-~~--~~~~--------~~~~~~~l~ell~- 90 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIG-YDRSPK-------P-EE--GADE--------FGVEYVSLDELLA- 90 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEE-EESSCH-------H-HH--HHHH--------TTEEESSHHHHHH-
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEE-ecccCC-------h-hh--hccc--------ccceeeehhhhcc-
Confidence 4679999999999999999999999999999994 454321 0 00 0000 0112223345553
Q ss_pred ccceEeeccc-----CCcccccccccccc-eEEEecCCCCC-CHHH-HHHHHhCCce
Q 015287 281 ECDVLVPCAL-----GGVLNKENAADVKA-KFIIEAANHPT-DPEA-DEILSKKGVV 329 (410)
Q Consensus 281 ~~DvliPaA~-----~~~I~~~na~~i~a-kiIvEgAN~p~-t~~A-~~iL~~rGI~ 329 (410)
.||+++-+.- .+.|+++....++- -+++.-|-+.+ ..+| .+.|++.-+.
T Consensus 91 ~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 91 QADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIA 147 (178)
T ss_dssp H-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEE
T ss_pred hhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCc
Confidence 6899987763 45666666666653 48888888884 5554 3566665554
No 41
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.02 E-value=0.0035 Score=64.68 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECC
Q 015287 184 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 184 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+.+-=++..+-.+.+..|..+.|+||.|+|+|++|+.+|+.|...|.+|+ +.|.
T Consensus 94 aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~-~~Dp 147 (381)
T PRK00257 94 GVVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVL-VCDP 147 (381)
T ss_pred HHHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEE-EECC
Confidence 33333444444555667888999999999999999999999999999998 4564
No 42
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.96 E-value=0.0082 Score=60.74 Aligned_cols=155 Identities=16% Similarity=0.183 Sum_probs=88.3
Q ss_pred CCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCccccc
Q 015287 201 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH 280 (410)
Q Consensus 201 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~ 280 (410)
|.+|.|++|.|.|+|++|+.+|+.|...|.+|+ +.|.+. + .. . .... +....+.++++ .
T Consensus 145 g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~-~~d~~~-----~---~~--~--~~~~-------~~~~~~l~ell-~ 203 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRIGQAVARRAKGFGMRIL-YYSRTR-----K---PE--A--EKEL-------GAEYRPLEELL-R 203 (333)
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EECCCC-----C---hh--h--HHHc-------CCEecCHHHHH-h
Confidence 346899999999999999999999999999998 456532 1 00 0 0010 11222334554 3
Q ss_pred ccceEeeccc-----CCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce-EeccccccccCceehhHHHhhh
Q 015287 281 ECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV-ILPDIYANSGGVTVSYFEWVQN 351 (410)
Q Consensus 281 ~~DvliPaA~-----~~~I~~~na~~i~-akiIvEgAN~p~-t~~A-~~iL~~rGI~-v~PD~laNaGGVi~s~~E~~qn 351 (410)
+||+++-|.- .+.|+++....++ -.+++.-+-+++ +.+| .+.|++.-|. ..=|+..+=--. -+.+--..|
T Consensus 204 ~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~n 282 (333)
T PRK13243 204 ESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKN 282 (333)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC-CchhhcCCC
Confidence 7899998873 3456665555554 358888888884 5444 4677766554 222333221100 122211122
Q ss_pred c---ccCCCCHHHHHHHHHHHHHHHHHHH
Q 015287 352 I---QGFMWEEEKVNHELKRYMMSAFKDI 377 (410)
Q Consensus 352 ~---~~~~w~~~~v~~~l~~~m~~~~~~v 377 (410)
. .|..|.-++...++.+.+.+++.+.
T Consensus 283 vilTPHia~~t~e~~~~~~~~~~~ni~~~ 311 (333)
T PRK13243 283 VVLAPHIGSATFEAREGMAELVAENLIAF 311 (333)
T ss_pred EEECCcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 1 2555555555555555555554443
No 43
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.95 E-value=0.0077 Score=55.21 Aligned_cols=96 Identities=17% Similarity=0.238 Sum_probs=67.0
Q ss_pred CCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccCh-HHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHH
Q 015287 180 GREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKK 258 (410)
Q Consensus 180 gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~ 258 (410)
...++|++.++..++ ....+++|++|.|.|.|. +|..+++.|.++|++|+ +++++- +++.+
T Consensus 22 ~~~p~~~~a~v~l~~----~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~-v~~r~~----------~~l~~--- 83 (168)
T cd01080 22 GFIPCTPAGILELLK----RYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVT-VCHSKT----------KNLKE--- 83 (168)
T ss_pred CccCChHHHHHHHHH----HcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEE-EEECCc----------hhHHH---
Confidence 345678777766444 445679999999999998 59989999999999866 776541 11111
Q ss_pred hCCCcccCCCCeeecCCcccccccceEeecccC-CcccccccccccceEEEecCCCC
Q 015287 259 SNKSLNDFQGGNAMDLNDLLVHECDVLVPCALG-GVLNKENAADVKAKFIIEAANHP 314 (410)
Q Consensus 259 ~~g~v~~~~~~~~i~~~~ll~~~~DvliPaA~~-~~I~~~na~~i~akiIvEgAN~p 314 (410)
.-.++||+|-|... +.|+.+..+. ..+|++-|..+
T Consensus 84 -------------------~l~~aDiVIsat~~~~ii~~~~~~~--~~viIDla~pr 119 (168)
T cd01080 84 -------------------HTKQADIVIVAVGKPGLVKGDMVKP--GAVVIDVGINR 119 (168)
T ss_pred -------------------HHhhCCEEEEcCCCCceecHHHccC--CeEEEEccCCC
Confidence 12368888887753 5777776543 47788888654
No 44
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=96.94 E-value=0.012 Score=65.60 Aligned_cols=120 Identities=23% Similarity=0.282 Sum_probs=90.2
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCC---EEEEEECCCCceeCCC--CCCHHHHHHH
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG---KVVAVSDITGAIKNPN--GIDVPALLKY 256 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga---kvVaVsD~~G~i~~~~--GlDi~~l~~~ 256 (410)
..-||-=+..++..+++..|.+++..||++.|.|..|-+++++|...|. +|+ ++|++|.++... +++..+. .
T Consensus 161 ~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~-~~D~~G~i~~~r~~~~~~~k~--~ 237 (752)
T PRK07232 161 QHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENII-VCDSKGVIYKGRTEGMDEWKA--A 237 (752)
T ss_pred cchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEE-EEcCCCeecCCCcccccHHHH--H
Confidence 4578888888889999989999999999999999999999999999998 565 999999999754 3443222 1
Q ss_pred HHhCCCcccCCCCeeecCCcccccccceEeecccCCcccccccccccc-eEEEecCCC
Q 015287 257 KKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKA-KFIIEAANH 313 (410)
Q Consensus 257 ~~~~g~v~~~~~~~~i~~~~ll~~~~DvliPaA~~~~I~~~na~~i~a-kiIvEgAN~ 313 (410)
+.+. .+ ..+-.|.+.. +||||=++.++.+|++-++...- .+|---||-
T Consensus 238 ~a~~---~~-----~~~l~~~i~~-~~v~iG~s~~g~~~~~~v~~M~~~piifalsNP 286 (752)
T PRK07232 238 YAVD---TD-----ARTLAEAIEG-ADVFLGLSAAGVLTPEMVKSMADNPIIFALANP 286 (752)
T ss_pred Hhcc---CC-----CCCHHHHHcC-CCEEEEcCCCCCCCHHHHHHhccCCEEEecCCC
Confidence 1111 00 0122344444 89999998899999998887643 477777773
No 45
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.92 E-value=0.003 Score=65.78 Aligned_cols=102 Identities=17% Similarity=0.294 Sum_probs=64.9
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCC
Q 015287 183 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKS 262 (410)
Q Consensus 183 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~ 262 (410)
.-||.+++ ..+++..+..+.|++|+|+|+|.+|..+++.+...|++|+ |+|.+ ...+...++ .
T Consensus 182 ~g~g~s~~---~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~Vi-V~d~d----------~~R~~~A~~-~-- 244 (413)
T cd00401 182 YGCRESLI---DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVI-VTEVD----------PICALQAAM-E-- 244 (413)
T ss_pred chhchhhH---HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEECC----------hhhHHHHHh-c--
Confidence 34666654 4455566778999999999999999999999999999987 67763 222222222 1
Q ss_pred cccCCCCeeecCCcccccccceEeeccc-CCcccccccccc--cceEE
Q 015287 263 LNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADV--KAKFI 307 (410)
Q Consensus 263 v~~~~~~~~i~~~~ll~~~~DvliPaA~-~~~I~~~na~~i--~akiI 307 (410)
+...++.++.+ ..+||+|.|+. ..+|+..-...+ .+.+|
T Consensus 245 -----G~~~~~~~e~v-~~aDVVI~atG~~~~i~~~~l~~mk~Ggilv 286 (413)
T cd00401 245 -----GYEVMTMEEAV-KEGDIFVTTTGNKDIITGEHFEQMKDGAIVC 286 (413)
T ss_pred -----CCEEccHHHHH-cCCCEEEECCCCHHHHHHHHHhcCCCCcEEE
Confidence 22222223333 36899999974 345665434433 34443
No 46
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=96.82 E-value=0.017 Score=57.84 Aligned_cols=110 Identities=22% Similarity=0.360 Sum_probs=72.6
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccccc
Q 015287 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE 281 (410)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~ 281 (410)
.+|.|+||.|.|||++|+.+|+.+...|.+|++ .|.++.-. .. .+ ...+-++++ ..
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~-~d~~~~~~-~~------------------~~---~~~~l~ell-~~ 196 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVY-YSTSGKNK-NE------------------EY---ERVSLEELL-KT 196 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEE-ECCCcccc-cc------------------Cc---eeecHHHHh-hc
Confidence 358999999999999999999999999999985 45432100 00 11 122334555 35
Q ss_pred cceEeecc-----cCCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCceEecccc
Q 015287 282 CDVLVPCA-----LGGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVVILPDIY 335 (410)
Q Consensus 282 ~DvliPaA-----~~~~I~~~na~~i~-akiIvEgAN~p~-t~~A-~~iL~~rGI~v~PD~l 335 (410)
||+++-+. ..+.|+++....+| --+++--|-+++ ..+| -+.|++.-|...=|++
T Consensus 197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~AaLDV~ 258 (311)
T PRK08410 197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIYAGLDVL 258 (311)
T ss_pred CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeEEEEecC
Confidence 88888775 23456666666664 357888888885 5544 4778776665344444
No 47
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.81 E-value=0.013 Score=58.22 Aligned_cols=94 Identities=18% Similarity=0.310 Sum_probs=69.8
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccCh-HHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN 260 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~ 260 (410)
.++|..|++..+ ++++.+++|++|+|.|-|+ ||+.++.+|.++|++|+ +++++. ..|.+
T Consensus 138 ~PcTp~ai~~ll----~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVt-v~~s~t----------~~l~~----- 197 (286)
T PRK14175 138 VPCTPLGIMEIL----KHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVT-ILHSRS----------KDMAS----- 197 (286)
T ss_pred CCCcHHHHHHHH----HHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE-EEeCCc----------hhHHH-----
Confidence 578999887655 4678899999999999988 99999999999999998 777642 01110
Q ss_pred CCcccCCCCeeecCCcccccccceEeeccc-CCcccccccccccceEEEecCCCC
Q 015287 261 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEAANHP 314 (410)
Q Consensus 261 g~v~~~~~~~~i~~~~ll~~~~DvliPaA~-~~~I~~~na~~i~akiIvEgAN~p 314 (410)
...++||+|-|.. .+.|+++..+. -.+|++.+.++
T Consensus 198 -----------------~~~~ADIVIsAvg~p~~i~~~~vk~--gavVIDvGi~~ 233 (286)
T PRK14175 198 -----------------YLKDADVIVSAVGKPGLVTKDVVKE--GAVIIDVGNTP 233 (286)
T ss_pred -----------------HHhhCCEEEECCCCCcccCHHHcCC--CcEEEEcCCCc
Confidence 1347888888875 44677765543 36778877765
No 48
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.79 E-value=0.0039 Score=54.72 Aligned_cols=103 Identities=17% Similarity=0.257 Sum_probs=68.7
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCccc--c
Q 015287 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL--V 279 (410)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll--~ 279 (410)
.+++++++.|.|.|.+|+.++..|.+.|++-|.|++.+ .+.+.+..++.+. .....++-+++. -
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt----------~~ra~~l~~~~~~----~~~~~~~~~~~~~~~ 73 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT----------PERAEALAEEFGG----VNIEAIPLEDLEEAL 73 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS----------HHHHHHHHHHHTG----CSEEEEEGGGHCHHH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC----------HHHHHHHHHHcCc----cccceeeHHHHHHHH
Confidence 37899999999999999999999999999855587764 4555554443210 011223334443 3
Q ss_pred cccceEeecccC--Ccccccccccccc--eEEEecCCCC-CCHH
Q 015287 280 HECDVLVPCALG--GVLNKENAADVKA--KFIIEAANHP-TDPE 318 (410)
Q Consensus 280 ~~~DvliPaA~~--~~I~~~na~~i~a--kiIvEgAN~p-~t~~ 318 (410)
.++||+|-|.-. ..|+++......- ++|++-|+-+ ++|+
T Consensus 74 ~~~DivI~aT~~~~~~i~~~~~~~~~~~~~~v~Dla~Pr~i~~~ 117 (135)
T PF01488_consen 74 QEADIVINATPSGMPIITEEMLKKASKKLRLVIDLAVPRDIDPE 117 (135)
T ss_dssp HTESEEEE-SSTTSTSSTHHHHTTTCHHCSEEEES-SS-SB-TT
T ss_pred hhCCeEEEecCCCCcccCHHHHHHHHhhhhceeccccCCCCChh
Confidence 589999988643 4778877776653 6999999743 4554
No 49
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=96.77 E-value=0.017 Score=58.27 Aligned_cols=37 Identities=30% Similarity=0.474 Sum_probs=32.9
Q ss_pred CCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECC
Q 015287 201 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 201 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
|.++.|+||.|.|||++|+.+|+.|...|.+|++ .|.
T Consensus 137 g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~-~d~ 173 (324)
T COG0111 137 GTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIG-YDP 173 (324)
T ss_pred cccccCCEEEEECCCHHHHHHHHHHHhCCCeEEE-ECC
Confidence 4468899999999999999999999999999994 454
No 50
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.77 E-value=0.00077 Score=57.31 Aligned_cols=90 Identities=27% Similarity=0.376 Sum_probs=52.5
Q ss_pred ccChHHHHHHHHHHHC----CCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccc-cccceEee
Q 015287 213 GFGNVGSWAAKFFHEH----GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV-HECDVLVP 287 (410)
Q Consensus 213 GfGnVG~~~a~~L~~~----GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~-~~~DvliP 287 (410)
|||+||+.+++.|.+. +.+|++|+|++ .+.+++ ....... .....+.+++++ .++||+|.
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~------~~~~~~~--------~~~~~~~~~~~~~~~~dvvVE 65 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKD------WAASFPD--------EAFTTDLEELIDDPDIDVVVE 65 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETT------HHHHHTH--------SCEESSHHHHHTHTT-SEEEE
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhh------hhhhccc--------ccccCCHHHHhcCcCCCEEEE
Confidence 8999999999999875 68999999999 766655 1111100 011122345554 47888888
Q ss_pred cccCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEeccccccccCce
Q 015287 288 CALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVT 342 (410)
Q Consensus 288 aA~~~~I~~~na~~i~akiIvEgAN~p~t~~A~~iL~~rGI~v~PD~laNaGGVi 342 (410)
|+-...+ .+.-.-.-++|+.|+ .+|.|.+.
T Consensus 66 ~t~~~~~----------------------~~~~~~~L~~G~~VV---t~nk~ala 95 (117)
T PF03447_consen 66 CTSSEAV----------------------AEYYEKALERGKHVV---TANKGALA 95 (117)
T ss_dssp -SSCHHH----------------------HHHHHHHHHTTCEEE---ES-HHHHH
T ss_pred CCCchHH----------------------HHHHHHHHHCCCeEE---EECHHHhh
Confidence 8532111 122234556888885 68888775
No 51
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.77 E-value=0.0093 Score=58.94 Aligned_cols=122 Identities=18% Similarity=0.253 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHC----CC-------EEEEEECCCCceeCCCC-CCHH
Q 015287 184 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEH----GG-------KVVAVSDITGAIKNPNG-IDVP 251 (410)
Q Consensus 184 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~----Ga-------kvVaVsD~~G~i~~~~G-lDi~ 251 (410)
-||-=+..++..+++..|.++++.||+|.|.|..|.+++++|.+. |. ++. +.|++|-+++... |+.
T Consensus 3 GTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~-~vD~~Gll~~~r~~l~~- 80 (279)
T cd05312 3 GTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIW-LVDSKGLLTKDRKDLTP- 80 (279)
T ss_pred hHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEE-EEcCCCeEeCCCCcchH-
Confidence 366667778888888889999999999999999999999999765 86 555 8999999997553 321
Q ss_pred HHHHHHHhCCCcccCCCCeeecCCccc-ccccceEeecc-cCCccccccccccc----ceEEEecCCC
Q 015287 252 ALLKYKKSNKSLNDFQGGNAMDLNDLL-VHECDVLVPCA-LGGVLNKENAADVK----AKFIIEAANH 313 (410)
Q Consensus 252 ~l~~~~~~~g~v~~~~~~~~i~~~~ll-~~~~DvliPaA-~~~~I~~~na~~i~----akiIvEgAN~ 313 (410)
....+.+.... ....+-.|.+ .+++||||=++ .++.+|++-++... =.+|---+|-
T Consensus 81 ~~~~~a~~~~~------~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNP 142 (279)
T cd05312 81 FKKPFARKDEE------KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNP 142 (279)
T ss_pred HHHHHHhhcCc------ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCc
Confidence 12222222110 0111223333 46999999988 47999999888763 4588888873
No 52
>PRK13529 malate dehydrogenase; Provisional
Probab=96.76 E-value=0.053 Score=58.34 Aligned_cols=183 Identities=17% Similarity=0.216 Sum_probs=118.9
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCccccCCCCCCCCchhHHHHHH
Q 015287 112 LSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGLGVFF 191 (410)
Q Consensus 112 ~s~~e~e~~~r~f~~~l~~~iG~~~dipapDvgt~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~ 191 (410)
.+..|-..|...|++++...- |..-|-=.|++... ---+.+.|+.. .| ++ .+...-||-=+..
T Consensus 218 ~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~~~--af~iL~ryr~~---i~-~F----------nDDiQGTaaV~LA 280 (563)
T PRK13529 218 IRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQKN--ARRILERYRDE---IC-TF----------NDDIQGTGAVTLA 280 (563)
T ss_pred CchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCCch--HHHHHHHhccC---CC-ee----------ccccchHHHHHHH
Confidence 345567778889999987665 44334456776532 22345667531 11 11 1234578888888
Q ss_pred HHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHH----CCC-------EEEEEECCCCceeCCCCCCHHHHHHHHHh-
Q 015287 192 ATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHE----HGG-------KVVAVSDITGAIKNPNGIDVPALLKYKKS- 259 (410)
Q Consensus 192 ~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~----~Ga-------kvVaVsD~~G~i~~~~GlDi~~l~~~~~~- 259 (410)
++..+++..|.+++..||++.|.|..|-++|++|.+ .|. ++. +.|++|-+++... |+..-...+.+
T Consensus 281 gll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~-~vD~~GLl~~~r~-~l~~~k~~fa~~ 358 (563)
T PRK13529 281 GLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFF-MVDRQGLLTDDMP-DLLDFQKPYARK 358 (563)
T ss_pred HHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEE-EEcCCCeEeCCCC-cchHHHHHHhhh
Confidence 889999988999999999999999999999999975 686 565 8999999997664 33222222221
Q ss_pred CCCcccCCCC-eeecCCccc-ccccceEeeccc-CCcccccccccccc----eEEEecCCC
Q 015287 260 NKSLNDFQGG-NAMDLNDLL-VHECDVLVPCAL-GGVLNKENAADVKA----KFIIEAANH 313 (410)
Q Consensus 260 ~g~v~~~~~~-~~i~~~~ll-~~~~DvliPaA~-~~~I~~~na~~i~a----kiIvEgAN~ 313 (410)
...+..++.. ...+-.|.+ .++.||||=++. ++.+|++-++.... .||---+|-
T Consensus 359 ~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 419 (563)
T PRK13529 359 REELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNP 419 (563)
T ss_pred cccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCc
Confidence 1111111100 001112333 467899998886 79999998877643 577777773
No 53
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.71 E-value=0.025 Score=59.98 Aligned_cols=154 Identities=17% Similarity=0.278 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCc
Q 015287 184 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL 263 (410)
Q Consensus 184 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v 263 (410)
--+.|...+++ +.+.+++++++.|.|.|.+|+.++..|.+.|++|+ +.|.+ .+.+.+..+..+.
T Consensus 314 TD~~G~~~~l~----~~~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~-i~~R~----------~~~~~~la~~~~~- 377 (477)
T PRK09310 314 TDGEGLFSLLK----QKNIPLNNQHVAIVGAGGAAKAIATTLARAGAELL-IFNRT----------KAHAEALASRCQG- 377 (477)
T ss_pred cCHHHHHHHHH----hcCCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHHhcc-
Confidence 34567776664 45678899999999999999999999999999876 66653 2333333222110
Q ss_pred ccCCCCeeecCCccc-ccccceEeecccCCcccccccccccceEEEecCCCCC-CHHHHHHHHhCCceEeccccccccCc
Q 015287 264 NDFQGGNAMDLNDLL-VHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPT-DPEADEILSKKGVVILPDIYANSGGV 341 (410)
Q Consensus 264 ~~~~~~~~i~~~~ll-~~~~DvliPaA~~~~I~~~na~~i~akiIvEgAN~p~-t~~A~~iL~~rGI~v~PD~laNaGGV 341 (410)
...+.+++- -.++|++|-|.-.+..-.. .+. ++|++-.-+|. |+ --+..+++|+.++.
T Consensus 378 ------~~~~~~~~~~l~~~DiVInatP~g~~~~~---~l~-~~v~D~~Y~P~~T~-ll~~A~~~G~~~~~--------- 437 (477)
T PRK09310 378 ------KAFPLESLPELHRIDIIINCLPPSVTIPK---AFP-PCVVDINTLPKHSP-YTQYARSQGSSIIY--------- 437 (477)
T ss_pred ------ceechhHhcccCCCCEEEEcCCCCCcchh---HHh-hhEEeccCCCCCCH-HHHHHHHCcCEEEC---------
Confidence 011111111 1378999988643321111 122 48899888884 55 55667888877543
Q ss_pred eehhHHHhh--h-cccCCCCHHHHHHHHHHHHHHHHHH
Q 015287 342 TVSYFEWVQ--N-IQGFMWEEEKVNHELKRYMMSAFKD 376 (410)
Q Consensus 342 i~s~~E~~q--n-~~~~~w~~~~v~~~l~~~m~~~~~~ 376 (410)
.+|++- . .+-..|+..+..++|++..++.+..
T Consensus 438 ---G~~Ml~~Qa~~~f~lw~g~~~~~~~~~~~~~~~~~ 472 (477)
T PRK09310 438 ---GYEMFAEQALLQFRLWFPTLLFKHLEKTFRRRVAN 472 (477)
T ss_pred ---cHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Confidence 334432 1 1234577777777777765554443
No 54
>PLN02494 adenosylhomocysteinase
Probab=96.70 E-value=0.015 Score=61.36 Aligned_cols=114 Identities=18% Similarity=0.299 Sum_probs=69.9
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCC
Q 015287 183 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKS 262 (410)
Q Consensus 183 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~ 262 (410)
.-||.+++ ..+++..+..+.|++|+|.|+|.+|+.+|+.+...|++|+ |.|.+. ....+....
T Consensus 234 yGtgqS~~---d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VI-V~e~dp----------~r~~eA~~~--- 296 (477)
T PLN02494 234 YGCRHSLP---DGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVI-VTEIDP----------ICALQALME--- 296 (477)
T ss_pred ccccccHH---HHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCCc----------hhhHHHHhc---
Confidence 35666654 4455556777999999999999999999999999999988 566532 111111111
Q ss_pred cccCCCCeeecCCcccccccceEeeccc-CCcccccccccccce-EEEecCC--CCCCHHH
Q 015287 263 LNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAK-FIIEAAN--HPTDPEA 319 (410)
Q Consensus 263 v~~~~~~~~i~~~~ll~~~~DvliPaA~-~~~I~~~na~~i~ak-iIvEgAN--~p~t~~A 319 (410)
+| ..++.++++ ..+||+|-|.- .+.|+.+....++.. +++-.+. ..+..++
T Consensus 297 --G~---~vv~leEal-~~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~a 351 (477)
T PLN02494 297 --GY---QVLTLEDVV-SEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLG 351 (477)
T ss_pred --CC---eeccHHHHH-hhCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHH
Confidence 11 112223433 36899998764 345677777766543 4444333 3354433
No 55
>PRK06932 glycerate dehydrogenase; Provisional
Probab=96.67 E-value=0.048 Score=54.75 Aligned_cols=108 Identities=19% Similarity=0.299 Sum_probs=69.7
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCccccccc
Q 015287 203 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHEC 282 (410)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~~ 282 (410)
++.|+||.|.|+|++|+.+|+.|...|.+|++. |... +... .. ...+-++++ ..|
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~-~~~~----~~~~----------------~~---~~~~l~ell-~~s 198 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYA-EHKG----ASVC----------------RE---GYTPFEEVL-KQA 198 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEE-CCCc----cccc----------------cc---ccCCHHHHH-HhC
Confidence 589999999999999999999999999999864 3321 0000 00 011224444 358
Q ss_pred ceEeeccc-----CCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce-Eecccc
Q 015287 283 DVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV-ILPDIY 335 (410)
Q Consensus 283 DvliPaA~-----~~~I~~~na~~i~-akiIvEgAN~p~-t~~A-~~iL~~rGI~-v~PD~l 335 (410)
|+++-+.- .+.|+++...++| --+++--|-+++ ..+| .+.|++.-|. ..=|+.
T Consensus 199 Div~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~ 260 (314)
T PRK06932 199 DIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVL 260 (314)
T ss_pred CEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecC
Confidence 88887762 3456666666554 357788888884 5554 3677766664 333433
No 56
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=96.66 E-value=0.048 Score=58.85 Aligned_cols=178 Identities=17% Similarity=0.211 Sum_probs=120.1
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCccccCCCCCCCCchhHHHHHH
Q 015287 112 LSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGLGVFF 191 (410)
Q Consensus 112 ~s~~e~e~~~r~f~~~l~~~iG~~~dipapDvgt~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~ 191 (410)
.+-.|-..+...|++++...-||..-|-=+|++....- -+.+.|+. ..| ++ .+...-||-=+..
T Consensus 243 v~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~af--~iL~ryr~---~i~-~F----------nDDiQGTaaV~lA 306 (581)
T PLN03129 243 LTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKNAF--RLLQRYRT---THL-CF----------NDDIQGTAAVALA 306 (581)
T ss_pred CchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCccHH--HHHHHhcc---CCC-Ee----------ccccchHHHHHHH
Confidence 34556677899999999887777544555677654222 24566742 111 11 1234578888888
Q ss_pred HHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHH-----CCC-------EEEEEECCCCceeCCCCCCHHHHHHHHHh
Q 015287 192 ATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHE-----HGG-------KVVAVSDITGAIKNPNGIDVPALLKYKKS 259 (410)
Q Consensus 192 ~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~-----~Ga-------kvVaVsD~~G~i~~~~GlDi~~l~~~~~~ 259 (410)
++..+++..|.+++..||++.|.|..|-++|++|.+ .|. ++. +.|++|-+++...-++..-...+.+
T Consensus 307 gll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~-~vD~~GLi~~~r~~~l~~~k~~fa~ 385 (581)
T PLN03129 307 GLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIW-LVDSKGLVTKSRKDSLQPFKKPFAH 385 (581)
T ss_pred HHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEE-EEcCCCeEeCCCCccChHHHHHHHh
Confidence 888999988999999999999999999999999976 475 565 8999999997653212222222222
Q ss_pred CCCcccCCCCeeecCCccc-ccccceEeeccc-CCcccccccccc----cceEEEecCCC
Q 015287 260 NKSLNDFQGGNAMDLNDLL-VHECDVLVPCAL-GGVLNKENAADV----KAKFIIEAANH 313 (410)
Q Consensus 260 ~g~v~~~~~~~~i~~~~ll-~~~~DvliPaA~-~~~I~~~na~~i----~akiIvEgAN~ 313 (410)
.. + ...+-.|++ .++.||||=++. ++.+|++-++.. +=.||---+|-
T Consensus 386 ~~-----~--~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP 438 (581)
T PLN03129 386 DH-----E--PGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP 438 (581)
T ss_pred hc-----c--cCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 11 0 011222333 568999998885 799999988876 44688888873
No 57
>PLN03139 formate dehydrogenase; Provisional
Probab=96.65 E-value=0.02 Score=59.15 Aligned_cols=108 Identities=23% Similarity=0.331 Sum_probs=69.9
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeee-cCCccccc
Q 015287 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVH 280 (410)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i-~~~~ll~~ 280 (410)
.+|.|++|.|.|+|++|+.+|+.|...|.+|++ .|.+ ..+.+.. ++. +.... +.++++ .
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~-~d~~-------~~~~~~~----~~~-------g~~~~~~l~ell-~ 254 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLY-HDRL-------KMDPELE----KET-------GAKFEEDLDAML-P 254 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEE-ECCC-------CcchhhH----hhc-------CceecCCHHHHH-h
Confidence 358999999999999999999999999999984 5543 2222111 111 11111 334555 4
Q ss_pred ccceEeeccc-----CCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q 015287 281 ECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV 329 (410)
Q Consensus 281 ~~DvliPaA~-----~~~I~~~na~~i~-akiIvEgAN~p~-t~~A-~~iL~~rGI~ 329 (410)
+||+++-|.- .+.|+++....++ -.+++.-|-+++ ..+| .+.|++.-|.
T Consensus 255 ~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~ 311 (386)
T PLN03139 255 KCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIG 311 (386)
T ss_pred hCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCce
Confidence 6999998763 3445555444443 358888888885 4444 3677776664
No 58
>PRK12862 malic enzyme; Reviewed
Probab=96.56 E-value=0.0093 Score=66.60 Aligned_cols=120 Identities=23% Similarity=0.267 Sum_probs=90.6
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCC---EEEEEECCCCceeCCC--CCCHHHHHHH
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG---KVVAVSDITGAIKNPN--GIDVPALLKY 256 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga---kvVaVsD~~G~i~~~~--GlDi~~l~~~ 256 (410)
..-||-=+..++..+++..|.+++..||++.|.|..|.+++++|...|. +|+ +.|++|.++... +|+..+.. +
T Consensus 169 ~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~-~~D~~G~i~~~r~~~l~~~~~~-~ 246 (763)
T PRK12862 169 QHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIW-VTDIKGVVYEGRTELMDPWKAR-Y 246 (763)
T ss_pred cccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEE-EEcCCCeeeCCCCccccHHHHH-H
Confidence 3568888888889999989999999999999999999999999999998 565 999999999754 35533221 2
Q ss_pred HHhCCCcccCCCCeeecCCcccccccceEeecccCCcccccccccccc-eEEEecCCC
Q 015287 257 KKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKA-KFIIEAANH 313 (410)
Q Consensus 257 ~~~~g~v~~~~~~~~i~~~~ll~~~~DvliPaA~~~~I~~~na~~i~a-kiIvEgAN~ 313 (410)
.+.. +. -+-.|.+.. +||||=++.++.+|++-++...- .+|---||-
T Consensus 247 a~~~----~~-----~~l~e~~~~-~~v~iG~s~~g~~~~~~v~~M~~~piifalsNP 294 (763)
T PRK12862 247 AQKT----DA-----RTLAEVIEG-ADVFLGLSAAGVLKPEMVKKMAPRPLIFALANP 294 (763)
T ss_pred hhhc----cc-----CCHHHHHcC-CCEEEEcCCCCCCCHHHHHHhccCCEEEeCCCC
Confidence 2211 10 122344544 89999998899999998887643 477777773
No 59
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=96.53 E-value=0.024 Score=57.15 Aligned_cols=108 Identities=23% Similarity=0.304 Sum_probs=69.5
Q ss_pred CCCCCCCeEEEEccChHHHHHHHHHH-HCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccc
Q 015287 201 GKSISNMKFAIQGFGNVGSWAAKFFH-EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV 279 (410)
Q Consensus 201 g~~l~g~~vaIqGfGnVG~~~a~~L~-~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~ 279 (410)
|.+|.|+|+.|.|+|++|+.+|+.|. ..|.+|+ ..|... +.+.. .. + +.+..+-++++
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~-~~~~~~--------~~~~~----~~------~-~~~~~~l~ell- 198 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPIL-YNARRH--------HKEAE----ER------F-NARYCDLDTLL- 198 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEE-EECCCC--------chhhH----Hh------c-CcEecCHHHHH-
Confidence 44689999999999999999999997 8999998 444321 00000 00 0 11223344554
Q ss_pred cccceEeeccc-----CCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q 015287 280 HECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV 329 (410)
Q Consensus 280 ~~~DvliPaA~-----~~~I~~~na~~i~-akiIvEgAN~p~-t~~A-~~iL~~rGI~ 329 (410)
..||+++.+.- .+.|+++.....| -.+++--|-+++ ..+| .+.|++.-|.
T Consensus 199 ~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 256 (323)
T PRK15409 199 QESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIH 256 (323)
T ss_pred HhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 47898887662 3456666555554 348888888885 5444 3677766664
No 60
>PRK07574 formate dehydrogenase; Provisional
Probab=96.53 E-value=0.024 Score=58.58 Aligned_cols=157 Identities=11% Similarity=0.125 Sum_probs=89.0
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCe-eecCCccccc
Q 015287 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGN-AMDLNDLLVH 280 (410)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~-~i~~~~ll~~ 280 (410)
.++.|++|.|.|+|++|+.+|+.|...|.+|++ .|.+. .+.+ .. +.. +.+ ..+.++++ .
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~-~dr~~-------~~~~-~~---~~~-------g~~~~~~l~ell-~ 247 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHY-TDRHR-------LPEE-VE---QEL-------GLTYHVSFDSLV-S 247 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEE-ECCCC-------Cchh-hH---hhc-------CceecCCHHHHh-h
Confidence 348999999999999999999999999999984 45432 1211 10 000 111 12334554 5
Q ss_pred ccceEeeccc-----CCcccccccccccc-eEEEecCCCCC-CHHH-HHHHHhCCce-EeccccccccCceehhHHHhhh
Q 015287 281 ECDVLVPCAL-----GGVLNKENAADVKA-KFIIEAANHPT-DPEA-DEILSKKGVV-ILPDIYANSGGVTVSYFEWVQN 351 (410)
Q Consensus 281 ~~DvliPaA~-----~~~I~~~na~~i~a-kiIvEgAN~p~-t~~A-~~iL~~rGI~-v~PD~laNaGGVi~s~~E~~qn 351 (410)
.|||++-|.- .+.|+++....++- .+++.-|-+++ ..+| .+.|++.-|. ..=|+.-+----..+.+.-..|
T Consensus 248 ~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pN 327 (385)
T PRK07574 248 VCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPR 327 (385)
T ss_pred cCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCC
Confidence 7999998873 44566655555543 58888888885 4433 4778877664 3334432211111111211122
Q ss_pred c---ccCCCCHHHHHHHHHHHHHHHHHHHH
Q 015287 352 I---QGFMWEEEKVNHELKRYMMSAFKDIK 378 (410)
Q Consensus 352 ~---~~~~w~~~~v~~~l~~~m~~~~~~v~ 378 (410)
. .|..+.-.+...++.+...+++.+.+
T Consensus 328 vilTPHiag~T~e~~~~~~~~~~~ni~~~~ 357 (385)
T PRK07574 328 NGMTPHISGTTLSAQARYAAGTREILECFF 357 (385)
T ss_pred eEECCccccCcHHHHHHHHHHHHHHHHHHH
Confidence 1 23444445555555555555554443
No 61
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.52 E-value=0.014 Score=56.95 Aligned_cols=121 Identities=18% Similarity=0.167 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCC-----------EEEEEECCCCceeCCCC-CCHH
Q 015287 184 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG-----------KVVAVSDITGAIKNPNG-IDVP 251 (410)
Q Consensus 184 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-----------kvVaVsD~~G~i~~~~G-lDi~ 251 (410)
-||-=+..++..+++..|.+++..||++.|.|..|-++|++|.+.+. ++. +.|++|-+++... ++..
T Consensus 3 GTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~-~vD~~Gll~~~r~~l~~~ 81 (254)
T cd00762 3 GTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIW-XVDRKGLLVKNRKETCPN 81 (254)
T ss_pred hhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEE-EECCCCeEeCCCCccCHH
Confidence 36666677788888888999999999999999999999999987654 455 8999999997553 4432
Q ss_pred HHH--HHHHhCCCcccCCCCeeecCCccc-ccccceEeeccc-CCccccccccccc----ceEEEecCCC
Q 015287 252 ALL--KYKKSNKSLNDFQGGNAMDLNDLL-VHECDVLVPCAL-GGVLNKENAADVK----AKFIIEAANH 313 (410)
Q Consensus 252 ~l~--~~~~~~g~v~~~~~~~~i~~~~ll-~~~~DvliPaA~-~~~I~~~na~~i~----akiIvEgAN~ 313 (410)
... ++.+. .....+-.|.+ ..+.||||=++. ++.+|++-++... =.+|---+|-
T Consensus 82 ~~~~~~~~~~--------~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNP 143 (254)
T cd00762 82 EYHLARFANP--------ERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNP 143 (254)
T ss_pred HHHHHHHcCc--------ccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCc
Confidence 211 11111 00111222333 469999998777 8999999887753 4588877873
No 62
>PLN02928 oxidoreductase family protein
Probab=96.50 E-value=0.027 Score=57.39 Aligned_cols=124 Identities=21% Similarity=0.305 Sum_probs=73.6
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCC--CCeeecCCcccc
Q 015287 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQ--GGNAMDLNDLLV 279 (410)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~--~~~~i~~~~ll~ 279 (410)
.++.|+|+.|.|+|++|+.+|+.|...|++|++ .|.+.. ++ ......+.. ..+..+. .....+-++++
T Consensus 155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~-~dr~~~---~~---~~~~~~~~~--~~~~~~~~~~~~~~~L~ell- 224 (347)
T PLN02928 155 DTLFGKTVFILGYGAIGIELAKRLRPFGVKLLA-TRRSWT---SE---PEDGLLIPN--GDVDDLVDEKGGHEDIYEFA- 224 (347)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEE-ECCCCC---hh---hhhhhcccc--ccccccccccCcccCHHHHH-
Confidence 469999999999999999999999999999984 455321 00 000000000 0000000 01112223444
Q ss_pred cccceEeeccc-----CCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCce-Eecccc
Q 015287 280 HECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEAD-EILSKKGVV-ILPDIY 335 (410)
Q Consensus 280 ~~~DvliPaA~-----~~~I~~~na~~i~-akiIvEgAN~p~-t~~A~-~iL~~rGI~-v~PD~l 335 (410)
..|||++-|.- .+.|+++....++ -.+++.-|-+++ ..+|- +.|++.-|. ..=|+.
T Consensus 225 ~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~ 289 (347)
T PLN02928 225 GEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVA 289 (347)
T ss_pred hhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccC
Confidence 36899998863 4566666666664 358888888885 55553 667766553 334443
No 63
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.49 E-value=0.0082 Score=62.41 Aligned_cols=96 Identities=18% Similarity=0.260 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCc
Q 015287 184 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL 263 (410)
Q Consensus 184 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v 263 (410)
.||.+++.+ +++..+..+.|++|+|.|+|.+|+.+|+.+...|++|+ |.|.+ .....+....
T Consensus 176 g~g~s~~~~---i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~Vi-V~d~d----------p~r~~~A~~~---- 237 (406)
T TIGR00936 176 GTGQSTIDG---ILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVI-VTEVD----------PIRALEAAMD---- 237 (406)
T ss_pred ccchhHHHH---HHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEE-EEeCC----------hhhHHHHHhc----
Confidence 455554433 34444667899999999999999999999999999987 56653 1122221111
Q ss_pred ccCCCCeeecCCcccccccceEeeccc-CCcccccccccc
Q 015287 264 NDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADV 302 (410)
Q Consensus 264 ~~~~~~~~i~~~~ll~~~~DvliPaA~-~~~I~~~na~~i 302 (410)
+....+.++.+ ..+||+|.|.- .+.|+.+....+
T Consensus 238 ----G~~v~~leeal-~~aDVVItaTG~~~vI~~~~~~~m 272 (406)
T TIGR00936 238 ----GFRVMTMEEAA-KIGDIFITATGNKDVIRGEHFENM 272 (406)
T ss_pred ----CCEeCCHHHHH-hcCCEEEECCCCHHHHHHHHHhcC
Confidence 11222223443 47899998763 345665444444
No 64
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.45 E-value=0.0054 Score=49.86 Aligned_cols=88 Identities=26% Similarity=0.254 Sum_probs=56.1
Q ss_pred eEEEEccChHHHHHHHHHHHCC---CEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccccccce
Q 015287 208 KFAIQGFGNVGSWAAKFFHEHG---GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDV 284 (410)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~G---akvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~~Dv 284 (410)
||+|.|+||+|+.+++-|.+.| .+|.-+++.+ .+.+.++.++.+.- ....++.++++ ++|+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~----------~~~~~~~~~~~~~~-----~~~~~~~~~~~-~adv 64 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS----------PEKAAELAKEYGVQ-----ATADDNEEAAQ-EADV 64 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS----------HHHHHHHHHHCTTE-----EESEEHHHHHH-HTSE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc----------HHHHHHHHHhhccc-----cccCChHHhhc-cCCE
Confidence 6889999999999999999999 8888565663 56666666553310 01113455665 8999
Q ss_pred EeecccCCcccccccc----cccceEEEecCC
Q 015287 285 LVPCALGGVLNKENAA----DVKAKFIIEAAN 312 (410)
Q Consensus 285 liPaA~~~~I~~~na~----~i~akiIvEgAN 312 (410)
+|.|--...+.+ -+. ..+-++|+.-+|
T Consensus 65 vilav~p~~~~~-v~~~i~~~~~~~~vis~~a 95 (96)
T PF03807_consen 65 VILAVKPQQLPE-VLSEIPHLLKGKLVISIAA 95 (96)
T ss_dssp EEE-S-GGGHHH-HHHHHHHHHTTSEEEEEST
T ss_pred EEEEECHHHHHH-HHHHHhhccCCCEEEEeCC
Confidence 999975554432 122 225566665554
No 65
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.39 E-value=0.052 Score=55.14 Aligned_cols=138 Identities=10% Similarity=0.116 Sum_probs=83.1
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhCCCCceecCccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHH
Q 015287 140 APDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGS 219 (410)
Q Consensus 140 apDvgt~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~ 219 (410)
|-+.|+....+..++..- +-+||-+-.--.-+ ..+..+.++...+++.+ .++++++|.|+|.|.+|+
T Consensus 121 A~~~g~~g~~L~~lf~~A---------~~~aKrVRteT~I~---~~~vSv~s~av~~~~~~-~~l~~k~vLvIGaGem~~ 187 (338)
T PRK00676 121 AARERKLPFALHFLFQKA---------LKEGKVFRSKGGAP---YAEVTIESVVQQELRRR-QKSKKASLLFIGYSEINR 187 (338)
T ss_pred HHHcCCchHHHHHHHHHH---------HHHHHHHhhhcCCC---CCCcCHHHHHHHHHHHh-CCccCCEEEEEcccHHHH
Confidence 456667777777776532 22333332100001 12223344444445555 459999999999999999
Q ss_pred HHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCc-ccccccceEeec-----ccCCc
Q 015287 220 WAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLND-LLVHECDVLVPC-----ALGGV 293 (410)
Q Consensus 220 ~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~-ll~~~~DvliPa-----A~~~~ 293 (410)
-+++.|.++|++-|.|+..+-.. + .|.+- ..+. -+..++||+|-| +....
T Consensus 188 l~a~~L~~~g~~~i~v~nRt~~~-----~----------------~~~~~---~~~~~~~~~~~DvVIs~t~~Tas~~p~ 243 (338)
T PRK00676 188 KVAYYLQRQGYSRITFCSRQQLT-----L----------------PYRTV---VREELSFQDPYDVIFFGSSESAYAFPH 243 (338)
T ss_pred HHHHHHHHcCCCEEEEEcCCccc-----c----------------chhhh---hhhhhhcccCCCEEEEcCCcCCCCCce
Confidence 99999999997655588876311 1 11100 0000 123578999965 45567
Q ss_pred ccccccccccceEEEecCCCC
Q 015287 294 LNKENAADVKAKFIIEAANHP 314 (410)
Q Consensus 294 I~~~na~~i~akiIvEgAN~p 314 (410)
|+.+......-+++++=|+..
T Consensus 244 i~~~~~~~~~~r~~iDLAvPR 264 (338)
T PRK00676 244 LSWESLADIPDRIVFDFNVPR 264 (338)
T ss_pred eeHHHHhhccCcEEEEecCCC
Confidence 887776666557999999743
No 66
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=96.34 E-value=0.015 Score=57.70 Aligned_cols=168 Identities=18% Similarity=0.248 Sum_probs=97.2
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccc--cccce
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV--HECDV 284 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~--~~~Dv 284 (410)
++|.|+|+|++|..+++.|.+.|.+|+ +.|.+ .+.+.+..+. + ...+ .+.+++.+ .++|+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~-~~dr~----------~~~~~~l~~~-g-~~~~-----~s~~~~~~~~~~~dv 62 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCV-GYDHD----------QDAVKAMKED-R-TTGV-----ANLRELSQRLSAPRV 62 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHHHHHc-C-Cccc-----CCHHHHHhhcCCCCE
Confidence 479999999999999999999999987 45653 3444444332 2 1111 12223322 35899
Q ss_pred EeecccCCcccccc----cccc-cceEEEecCCCC--CCHHHHHHHHhCCceEeccccc------------cccCceehh
Q 015287 285 LVPCALGGVLNKEN----AADV-KAKFIIEAANHP--TDPEADEILSKKGVVILPDIYA------------NSGGVTVSY 345 (410)
Q Consensus 285 liPaA~~~~I~~~n----a~~i-~akiIvEgAN~p--~t~~A~~iL~~rGI~v~PD~la------------NaGGVi~s~ 345 (410)
++-|.-.. ...+. ++.+ +-++|++..|.. .|.+..+.++++|+.++---+. ..||=- ..
T Consensus 63 Ii~~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG~~-~~ 140 (298)
T TIGR00872 63 VWVMVPHG-IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGGDG-EA 140 (298)
T ss_pred EEEEcCch-HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCCCH-HH
Confidence 88775433 22222 2223 236899999984 4667778899999987632221 112210 11
Q ss_pred HHHhhh----cc----cCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHH
Q 015287 346 FEWVQN----IQ----GFMW--------EEEKVNHELKRYMMSAFKDIKTMCQTH--NCNLRMGAFT 394 (410)
Q Consensus 346 ~E~~qn----~~----~~~w--------~~~~v~~~l~~~m~~~~~~v~~~a~~~--~~~~r~aA~~ 394 (410)
++-++. +. +..+ .-+.++.-+.-.+..++.+.++.+++. ++++.+.+.+
T Consensus 141 ~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i 207 (298)
T TIGR00872 141 FARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARV 207 (298)
T ss_pred HHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHH
Confidence 222221 11 0111 123445555556667888888888876 4577766655
No 67
>PRK06487 glycerate dehydrogenase; Provisional
Probab=96.34 E-value=0.084 Score=53.07 Aligned_cols=101 Identities=20% Similarity=0.336 Sum_probs=66.8
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCccccccc
Q 015287 203 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHEC 282 (410)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~~ 282 (410)
++.|+||.|.|+|++|+.+|+.|...|.+|++. |..+ +++.. ...+-++++ ..+
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~-~~~~---~~~~~---------------------~~~~l~ell-~~s 198 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGMRVLIG-QLPG---RPARP---------------------DRLPLDELL-PQV 198 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEE-CCCC---Ccccc---------------------cccCHHHHH-HhC
Confidence 589999999999999999999999999999864 4322 11100 011223443 367
Q ss_pred ceEeecc-----cCCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q 015287 283 DVLVPCA-----LGGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV 329 (410)
Q Consensus 283 DvliPaA-----~~~~I~~~na~~i~-akiIvEgAN~p~-t~~A-~~iL~~rGI~ 329 (410)
|+++-+. ..+.|+++....+| --+++--|-+++ ..+| .+.|++.-|.
T Consensus 199 Div~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 253 (317)
T PRK06487 199 DALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLG 253 (317)
T ss_pred CEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 8888665 24456666666664 347788888884 5444 3667766654
No 68
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.31 E-value=0.002 Score=55.80 Aligned_cols=104 Identities=24% Similarity=0.274 Sum_probs=60.1
Q ss_pred CeEEEEcc-ChHHHHHHHHHHH-CCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeee--cCCccccccc
Q 015287 207 MKFAIQGF-GNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM--DLNDLLVHEC 282 (410)
Q Consensus 207 ~~vaIqGf-GnVG~~~a~~L~~-~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i--~~~~ll~~~~ 282 (410)
+||+|.|+ |++|+.+++.+.+ .+.+++++.|++..- -.|-|+.++.... +....+ +.++++.. +
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~--~~g~d~g~~~~~~---------~~~~~v~~~l~~~~~~-~ 68 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSA--KVGKDVGELAGIG---------PLGVPVTDDLEELLEE-A 68 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTST--TTTSBCHHHCTSS---------T-SSBEBS-HHHHTTH--
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcc--cccchhhhhhCcC---------CcccccchhHHHhccc-C
Confidence 48999999 9999999999987 899999999987622 2355655543211 011112 22355555 9
Q ss_pred ceEeecccCCccccccccc---ccceEEEecCCCCCCHHHHHHHHh
Q 015287 283 DVLVPCALGGVLNKENAAD---VKAKFIIEAANHPTDPEADEILSK 325 (410)
Q Consensus 283 DvliPaA~~~~I~~~na~~---i~akiIvEgAN~p~t~~A~~iL~~ 325 (410)
||+|.+.....+. +|++. -+..+|++=.- .+++-.+.|++
T Consensus 69 DVvIDfT~p~~~~-~~~~~~~~~g~~~ViGTTG--~~~~~~~~l~~ 111 (124)
T PF01113_consen 69 DVVIDFTNPDAVY-DNLEYALKHGVPLVIGTTG--FSDEQIDELEE 111 (124)
T ss_dssp SEEEEES-HHHHH-HHHHHHHHHT-EEEEE-SS--SHHHHHHHHHH
T ss_pred CEEEEcCChHHhH-HHHHHHHhCCCCEEEECCC--CCHHHHHHHHH
Confidence 9999997443332 22222 25666664332 34444344444
No 69
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=96.30 E-value=0.014 Score=57.31 Aligned_cols=112 Identities=19% Similarity=0.259 Sum_probs=68.8
Q ss_pred CCCCeEEEEccChHHHHHHHHHHH--CCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccccc
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHE--HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE 281 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~--~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~ 281 (410)
++.+||+|.|+|.+|+..++.|.+ .+.++++|+|.+ .+...+..++.+.... .-+.++++ .+
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~----------~~~a~~~a~~~g~~~~-----~~~~eell-~~ 67 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD----------PQRHADFIWGLRRPPP-----VVPLDQLA-TH 67 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC----------HHHHHHHHHhcCCCcc-----cCCHHHHh-cC
Confidence 456899999999999999999976 478999998874 3343333333221111 12345665 46
Q ss_pred cceEeecccCCccccccccc-c--cceEEEecCCCC-CCHHHHHHHHhCCceE-ec
Q 015287 282 CDVLVPCALGGVLNKENAAD-V--KAKFIIEAANHP-TDPEADEILSKKGVVI-LP 332 (410)
Q Consensus 282 ~DvliPaA~~~~I~~~na~~-i--~akiIvEgAN~p-~t~~A~~iL~~rGI~v-~P 332 (410)
+|+++.|+-.... .+-+.. + +..++++..-.. ...+..+..+++|+.+ +|
T Consensus 68 ~D~Vvi~tp~~~h-~e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~ 122 (271)
T PRK13302 68 ADIVVEAAPASVL-RAIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVP 122 (271)
T ss_pred CCEEEECCCcHHH-HHHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEc
Confidence 8999999854433 333322 2 345777642211 1244456678889865 44
No 70
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.29 E-value=0.19 Score=52.45 Aligned_cols=99 Identities=21% Similarity=0.371 Sum_probs=62.5
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCccc--cc
Q 015287 203 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL--VH 280 (410)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll--~~ 280 (410)
++.+++|.|.|.|.+|+.+++.|...|++-|.|++.+ .+.+.+..++.+ ...++.+++. -.
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~----------~~ra~~la~~~g-------~~~~~~~~~~~~l~ 241 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRT----------LERAEELAEEFG-------GEAIPLDELPEALA 241 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCC----------HHHHHHHHHHcC-------CcEeeHHHHHHHhc
Confidence 5789999999999999999999999998444477764 233333333322 1111111211 13
Q ss_pred ccceEeeccc--CCcccccccccc------cceEEEecCCCC-CCHH
Q 015287 281 ECDVLVPCAL--GGVLNKENAADV------KAKFIIEAANHP-TDPE 318 (410)
Q Consensus 281 ~~DvliPaA~--~~~I~~~na~~i------~akiIvEgAN~p-~t~~ 318 (410)
++||+|-|.. ...|+.+..... +-.++++-|+-. +.|+
T Consensus 242 ~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prdid~~ 288 (423)
T PRK00045 242 EADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRDIEPE 288 (423)
T ss_pred cCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCCCccc
Confidence 7899999964 346666655432 335888888643 4554
No 71
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.29 E-value=0.015 Score=56.68 Aligned_cols=109 Identities=22% Similarity=0.206 Sum_probs=66.1
Q ss_pred CeEEEEcc-ChHHHHHHHHHHH-CCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccccccce
Q 015287 207 MKFAIQGF-GNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDV 284 (410)
Q Consensus 207 ~~vaIqGf-GnVG~~~a~~L~~-~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~~Dv 284 (410)
++|+|.|+ |.+|+..++.+.+ .+.++++++|.+..-... . .. ..+..+ -+.++++. ++|+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~----------~-~~-~~i~~~-----~dl~~ll~-~~Dv 63 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG----------Q-GA-LGVAIT-----DDLEAVLA-DADV 63 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc----------c-CC-CCcccc-----CCHHHhcc-CCCE
Confidence 58999998 9999999999876 579999999986321100 0 00 011111 12234554 7999
Q ss_pred EeecccCCccccccccc---ccceEEEecCCCCCCH-HHHHHH---HhCCceEeccccc
Q 015287 285 LVPCALGGVLNKENAAD---VKAKFIIEAANHPTDP-EADEIL---SKKGVVILPDIYA 336 (410)
Q Consensus 285 liPaA~~~~I~~~na~~---i~akiIvEgAN~p~t~-~A~~iL---~~rGI~v~PD~la 336 (410)
+|-|+.+... .+++.. -+..+|++ ....++ +++++. ++.++++.|.+.-
T Consensus 64 Vid~t~p~~~-~~~~~~al~~G~~vvig--ttG~s~~~~~~l~~aa~~~~v~~s~n~s~ 119 (257)
T PRK00048 64 LIDFTTPEAT-LENLEFALEHGKPLVIG--TTGFTEEQLAELEEAAKKIPVVIAPNFSI 119 (257)
T ss_pred EEECCCHHHH-HHHHHHHHHcCCCEEEE--CCCCCHHHHHHHHHHhcCCCEEEECcchH
Confidence 9999865554 444443 25678877 333443 444333 3356777777643
No 72
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.24 E-value=0.025 Score=57.03 Aligned_cols=32 Identities=41% Similarity=0.652 Sum_probs=29.5
Q ss_pred CeEEEEccChHHHHHHHHHHHCC--CEEEEEECC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHG--GKVVAVSDI 238 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G--akvVaVsD~ 238 (410)
.||+|-|||.+|+.+++.+.+++ .+||||.|.
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~ 35 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDL 35 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 58999999999999999999875 899999995
No 73
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=96.24 E-value=0.011 Score=62.53 Aligned_cols=172 Identities=15% Similarity=0.137 Sum_probs=103.6
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHh---CCC-cccCCCCeeecCCccccc--
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKS---NKS-LNDFQGGNAMDLNDLLVH-- 280 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~---~g~-v~~~~~~~~i~~~~ll~~-- 280 (410)
.+|.|+|.|++|+++|+.|.++|.+|+ +-|.+ .+...+..+. .+. +.. .-+.+++.+.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~-v~dr~----------~~~~~~l~~~~~~~g~~i~~-----~~s~~e~v~~l~ 65 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKIS-VYNRT----------YEKTEEFVKKAKEGNTRVKG-----YHTLEELVNSLK 65 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEE-EEeCC----------HHHHHHHHHhhhhcCCccee-----cCCHHHHHhcCC
Confidence 479999999999999999999999987 65653 3333333321 121 111 1133455542
Q ss_pred ccceEeecccCCcccccc----cccc-cceEEEecCCCC--CCHHHHHHHHhCCceEeccc------------cccccCc
Q 015287 281 ECDVLVPCALGGVLNKEN----AADV-KAKFIIEAANHP--TDPEADEILSKKGVVILPDI------------YANSGGV 341 (410)
Q Consensus 281 ~~DvliPaA~~~~I~~~n----a~~i-~akiIvEgAN~p--~t~~A~~iL~~rGI~v~PD~------------laNaGGV 341 (410)
++|+++-|........+. .+.+ +-++|+++.|.- .|.+..+.+.++||.++=-- ..-.||=
T Consensus 66 ~~d~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG~ 145 (470)
T PTZ00142 66 KPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGGN 145 (470)
T ss_pred CCCEEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeCC
Confidence 689888775544433333 3333 347999999985 35666688999999987211 1111221
Q ss_pred eehhHHHhhhc----cc-------CCC--------CHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH
Q 015287 342 TVSYFEWVQNI----QG-------FMW--------EEEKVNHELKRYMMSAFKDIKTMCQ-THNCNLRMGAFTL 395 (410)
Q Consensus 342 i~s~~E~~qn~----~~-------~~w--------~~~~v~~~l~~~m~~~~~~v~~~a~-~~~~~~r~aA~~~ 395 (410)
- ..|+.++.+ .. ..| --.-|+.-++.-+-..+.+.++.++ ..++++.+.+.++
T Consensus 146 ~-~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~ 218 (470)
T PTZ00142 146 K-EAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVF 218 (470)
T ss_pred H-HHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 1 123333221 10 011 1134666777777888899999987 6888887766554
No 74
>PRK06436 glycerate dehydrogenase; Provisional
Probab=96.21 E-value=0.019 Score=57.53 Aligned_cols=104 Identities=20% Similarity=0.276 Sum_probs=67.8
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccccc
Q 015287 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE 281 (410)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~ 281 (410)
..|.|++|.|.|+|++|+.+|+.|...|.+|++ .|.+. .++|.. . ...+.++++ .+
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~-~~r~~---~~~~~~---------------~----~~~~l~ell-~~ 173 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYA-YTRSY---VNDGIS---------------S----IYMEPEDIM-KK 173 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEE-ECCCC---cccCcc---------------c----ccCCHHHHH-hh
Confidence 358999999999999999999999999999995 45431 111110 0 011334554 47
Q ss_pred cceEeeccc-----CCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q 015287 282 CDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV 329 (410)
Q Consensus 282 ~DvliPaA~-----~~~I~~~na~~i~-akiIvEgAN~p~-t~~A-~~iL~~rGI~ 329 (410)
||+++-|.- .+.|+++....++ -.+++.-+-+++ ..+| .+.|+++-+.
T Consensus 174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~ 229 (303)
T PRK06436 174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDK 229 (303)
T ss_pred CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCce
Confidence 899988763 3455555555553 347787777774 4444 5677776453
No 75
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.20 E-value=0.13 Score=50.21 Aligned_cols=130 Identities=15% Similarity=0.228 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcc
Q 015287 185 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLN 264 (410)
Q Consensus 185 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~ 264 (410)
-+.|...+++. .+...+++++.|.|.|.+|+.++..|.+.|++|+ |.|.+ .+.+.+..++-.
T Consensus 100 D~~G~~~~l~~----~~~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~-v~~R~----------~~~~~~la~~~~--- 161 (270)
T TIGR00507 100 DGIGLVSDLER----LIPLRPNQRVLIIGAGGAARAVALPLLKADCNVI-IANRT----------VSKAEELAERFQ--- 161 (270)
T ss_pred CHHHHHHHHHh----cCCCccCCEEEEEcCcHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHHHh---
Confidence 46777777553 3445678999999999999999999999998776 66653 233333322211
Q ss_pred cCCCCeeecCCcccccccceEeecccCCc---ccccc--ccccc-ceEEEecCCCCCCHHHHHHHHhCCceEec
Q 015287 265 DFQGGNAMDLNDLLVHECDVLVPCALGGV---LNKEN--AADVK-AKFIIEAANHPTDPEADEILSKKGVVILP 332 (410)
Q Consensus 265 ~~~~~~~i~~~~ll~~~~DvliPaA~~~~---I~~~n--a~~i~-akiIvEgAN~p~t~~A~~iL~~rGI~v~P 332 (410)
.+......+.++....++||+|-|.--+. +.+.. ...++ -++|++-.-.|....--+..+++|+.++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~T~ll~~A~~~G~~~vd 235 (270)
T TIGR00507 162 RYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGETPFLAEAKSLGTKTID 235 (270)
T ss_pred hcCceEEechhhhcccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCCCHHHHHHHHCCCeeeC
Confidence 11111122222222347999998874332 21111 12232 34888888777522466778888887653
No 76
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.18 E-value=0.032 Score=55.38 Aligned_cols=52 Identities=13% Similarity=0.154 Sum_probs=44.2
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccCh-HHHHHHHHHHHCCCEEEEEECC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakvVaVsD~ 238 (410)
.+.|-+|+...++ +.+.+++|++|+|.|.|+ ||+.++.+|.++|+.|. |+++
T Consensus 139 ~p~T~~gii~~L~----~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVt-v~~~ 191 (283)
T PRK14192 139 GSATPAGIMRLLK----AYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVT-ICHS 191 (283)
T ss_pred cCCcHHHHHHHHH----HcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEE-EEeC
Confidence 4678888876655 568899999999999998 99999999999999654 8876
No 77
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.14 E-value=0.26 Score=51.44 Aligned_cols=99 Identities=26% Similarity=0.430 Sum_probs=62.3
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHCC-CEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCccc--c
Q 015287 203 SISNMKFAIQGFGNVGSWAAKFFHEHG-GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL--V 279 (410)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~G-akvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll--~ 279 (410)
++.+++|.|.|.|.+|+.+++.|...| .+|+ |.|.+ .+...+..++-+ ...++.+++. -
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~-v~~rs----------~~ra~~la~~~g-------~~~i~~~~l~~~l 238 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKIL-IANRT----------YERAEDLAKELG-------GEAVKFEDLEEYL 238 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEE-EEeCC----------HHHHHHHHHHcC-------CeEeeHHHHHHHH
Confidence 478999999999999999999999999 4555 77764 233333333211 1112112221 1
Q ss_pred cccceEeeccc--CCcccccccccc-----cceEEEecCCCC-CCHHH
Q 015287 280 HECDVLVPCAL--GGVLNKENAADV-----KAKFIIEAANHP-TDPEA 319 (410)
Q Consensus 280 ~~~DvliPaA~--~~~I~~~na~~i-----~akiIvEgAN~p-~t~~A 319 (410)
.++||+|-|.. ...|+.+..... +..+|++-|+.. ++|+.
T Consensus 239 ~~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid~~v 286 (417)
T TIGR01035 239 AEADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPRDVDPAV 286 (417)
T ss_pred hhCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCChhh
Confidence 37999999963 455676655442 234888998533 56654
No 78
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=96.11 E-value=0.013 Score=57.20 Aligned_cols=107 Identities=16% Similarity=0.249 Sum_probs=65.3
Q ss_pred CeEEEEccChHHHHHHHHHHHC--CCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccccccce
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEH--GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDV 284 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~--GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~~Dv 284 (410)
+||+|.|+|++|+..++.|.+. +.++++|+|.+ .+...+..+..+ . ...-+.++++ .++|+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~----------~~~a~~~a~~~~-~-----~~~~~~~ell-~~~Dv 64 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN----------LEKAENLASKTG-A-----KACLSIDELV-EDVDL 64 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC----------HHHHHHHHHhcC-C-----eeECCHHHHh-cCCCE
Confidence 5899999999999999988765 58899999875 233333322211 1 1112345666 68999
Q ss_pred EeecccCCccccccccc-c--cceEEEecC----CCCCCHHHHHHHHhCCceEe
Q 015287 285 LVPCALGGVLNKENAAD-V--KAKFIIEAA----NHPTDPEADEILSKKGVVIL 331 (410)
Q Consensus 285 liPaA~~~~I~~~na~~-i--~akiIvEgA----N~p~t~~A~~iL~~rGI~v~ 331 (410)
++.|+..... .+.+.. + +..+|++.. +-+...+..+..+++|+.+.
T Consensus 65 Vvi~a~~~~~-~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~ 117 (265)
T PRK13304 65 VVECASVNAV-EEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIY 117 (265)
T ss_pred EEEcCChHHH-HHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEE
Confidence 9999854443 333322 2 445777542 22222344556778886543
No 79
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.08 E-value=0.061 Score=57.81 Aligned_cols=108 Identities=28% Similarity=0.313 Sum_probs=69.1
Q ss_pred CCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCccccc
Q 015287 201 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH 280 (410)
Q Consensus 201 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~ 280 (410)
|.++.|+||.|.|+|++|+.+|+.|...|.+|++ .|.+. +.+.. ... +.+..+.++++.
T Consensus 135 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~-~d~~~--------~~~~~----~~~-------g~~~~~l~ell~- 193 (526)
T PRK13581 135 GVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIA-YDPYI--------SPERA----AQL-------GVELVSLDELLA- 193 (526)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEE-ECCCC--------ChhHH----Hhc-------CCEEEcHHHHHh-
Confidence 3458999999999999999999999999999984 34321 11111 110 122334455553
Q ss_pred ccceEeeccc-----CCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q 015287 281 ECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV 329 (410)
Q Consensus 281 ~~DvliPaA~-----~~~I~~~na~~i~-akiIvEgAN~p~-t~~A-~~iL~~rGI~ 329 (410)
+||+++-|.- .+.|+++....++ -.+++.-+-+++ +.+| .+.|++.-|.
T Consensus 194 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 250 (526)
T PRK13581 194 RADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVA 250 (526)
T ss_pred hCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCee
Confidence 7888887763 3456655555543 347778888874 5444 3667766664
No 80
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=96.06 E-value=0.074 Score=52.29 Aligned_cols=170 Identities=14% Similarity=0.134 Sum_probs=92.6
Q ss_pred eEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccccccceEee
Q 015287 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVP 287 (410)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DvliP 287 (410)
+|.|+|+|++|+.+|+.|.+.|.+|+ +.|.+ .+.+.+..+. +... .-+..+++ .+||++|-
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~-~~dr~----------~~~~~~~~~~-g~~~------~~~~~~~~-~~aDivi~ 61 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLH-VTTIG----------PEVADELLAA-GAVT------AETARQVT-EQADVIFT 61 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEE-EEcCC----------HHHHHHHHHC-CCcc------cCCHHHHH-hcCCEEEE
Confidence 58899999999999999999999987 55553 2333332222 2110 01222333 47999999
Q ss_pred cccCCcccccc-------cccc-cceEEEecCCCCC--CHHHHHHHHhCCceEeccccc------cccC--ceeh----h
Q 015287 288 CALGGVLNKEN-------AADV-KAKFIIEAANHPT--DPEADEILSKKGVVILPDIYA------NSGG--VTVS----Y 345 (410)
Q Consensus 288 aA~~~~I~~~n-------a~~i-~akiIvEgAN~p~--t~~A~~iL~~rGI~v~PD~la------NaGG--Vi~s----~ 345 (410)
|.-........ ...+ .-++|+...+... +.+..+.+.++|+.++.--+. -.|- ++++ .
T Consensus 62 ~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~ 141 (291)
T TIGR01505 62 MVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAV 141 (291)
T ss_pred ecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHH
Confidence 86443211111 1122 3468887665542 235567788999876642221 1111 1111 1
Q ss_pred HHHh----hhccc----CCC-CHH----HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 015287 346 FEWV----QNIQG----FMW-EEE----KVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLG 396 (410)
Q Consensus 346 ~E~~----qn~~~----~~w-~~~----~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A 396 (410)
++.+ +.+.. ... ... -++.-+.......+.+.+..+++.|+++.+..-.+.
T Consensus 142 ~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~ 205 (291)
T TIGR01505 142 FDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALR 205 (291)
T ss_pred HHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 1111 11111 111 111 223333334445688888999999999988776654
No 81
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=96.04 E-value=0.017 Score=56.36 Aligned_cols=123 Identities=20% Similarity=0.189 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHC----CC------EEEEEECCCCceeCCCCCCHHHHH
Q 015287 185 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEH----GG------KVVAVSDITGAIKNPNGIDVPALL 254 (410)
Q Consensus 185 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~----Ga------kvVaVsD~~G~i~~~~GlDi~~l~ 254 (410)
||-=+..++-.+++..|.+|++.||++.|.|..|-+++++|.+. |. +=+-+.|++|-+++.. =|+..-.
T Consensus 4 TaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r-~~l~~~~ 82 (255)
T PF03949_consen 4 TAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR-EDLNPHK 82 (255)
T ss_dssp HHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT-SSHSHHH
T ss_pred hHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC-ccCChhh
Confidence 56566677788888889999999999999999999999999876 87 3334899999999755 3333322
Q ss_pred HHHHhC-CCcccCCCCeeecCCcc-cccccceEeecc-cCCcccccccccccc----eEEEecCCC
Q 015287 255 KYKKSN-KSLNDFQGGNAMDLNDL-LVHECDVLVPCA-LGGVLNKENAADVKA----KFIIEAANH 313 (410)
Q Consensus 255 ~~~~~~-g~v~~~~~~~~i~~~~l-l~~~~DvliPaA-~~~~I~~~na~~i~a----kiIvEgAN~ 313 (410)
..+.+. .... ...+-.|. -..+.||||=++ .++.+|++-++.... .+|---+|-
T Consensus 83 ~~~a~~~~~~~-----~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNP 143 (255)
T PF03949_consen 83 KPFARKTNPEK-----DWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNP 143 (255)
T ss_dssp HHHHBSSSTTT-------SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSS
T ss_pred hhhhccCcccc-----cccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCC
Confidence 222221 1111 01112222 356789999888 899999999888643 688888873
No 82
>PRK06349 homoserine dehydrogenase; Provisional
Probab=95.99 E-value=0.023 Score=59.37 Aligned_cols=158 Identities=18% Similarity=0.199 Sum_probs=85.0
Q ss_pred CCeEEEEccChHHHHHHHHHHHC----------CCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCee-ecC
Q 015287 206 NMKFAIQGFGNVGSWAAKFFHEH----------GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNA-MDL 274 (410)
Q Consensus 206 g~~vaIqGfGnVG~~~a~~L~~~----------GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~-i~~ 274 (410)
-.+|+|.|+|+||+.+++.|.++ +.+|++|+|++..-. .+++ +++... -+.
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~--~~~~----------------~~~~~~~~d~ 64 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD--RGVD----------------LPGILLTTDP 64 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc--cCCC----------------CcccceeCCH
Confidence 36899999999999999998653 468999999863211 1111 111111 133
Q ss_pred Ccccc-cccceEeecccCCccccccc-cccc--ceEEEecCCCCC-C---HHHHHHHHhCCceEecccccccc-Cc--ee
Q 015287 275 NDLLV-HECDVLVPCALGGVLNKENA-ADVK--AKFIIEAANHPT-D---PEADEILSKKGVVILPDIYANSG-GV--TV 343 (410)
Q Consensus 275 ~~ll~-~~~DvliPaA~~~~I~~~na-~~i~--akiIvEgAN~p~-t---~~A~~iL~~rGI~v~PD~laNaG-GV--i~ 343 (410)
++++. .++|+++.|.-+...+.+-+ ..++ -.+|++ |-+. . ++..+..+++|+.+. |=+.-| |+ +.
T Consensus 65 ~~ll~d~~iDvVve~tg~~~~~~~~~~~aL~~GkhVVta--NK~~~a~~~~eL~~lA~~~gv~l~--fEasV~ggiPii~ 140 (426)
T PRK06349 65 EELVNDPDIDIVVELMGGIEPARELILKALEAGKHVVTA--NKALLAVHGAELFAAAEEKGVDLY--FEAAVAGGIPIIK 140 (426)
T ss_pred HHHhhCCCCCEEEECCCCchHHHHHHHHHHHCCCeEEEc--CHHHHHHHHHHHHHHHHHcCCcEE--EEEEeeccCchHH
Confidence 56664 57999999964433333333 2233 346654 4332 2 333456678898755 222222 22 22
Q ss_pred hhHHHhhh-----ccc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 015287 344 SYFEWVQN-----IQG-FMWEEEKVNHELKRYMMSAFKDIKTMCQTHNC 386 (410)
Q Consensus 344 s~~E~~qn-----~~~-~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~ 386 (410)
.--+.+.. +.+ +.=+-.-+..++.+. ...|++++..|++.|.
T Consensus 141 ~l~~~l~~~~I~~I~GIlnGT~nyIl~~m~~~-g~~f~~al~~Aq~~Gy 188 (426)
T PRK06349 141 ALREGLAANRITRVMGIVNGTTNYILTKMTEE-GLSFEDALKEAQRLGY 188 (426)
T ss_pred HHHhhcccCCeeEEEEEEeCcHHHHHhhhhhc-CCCHHHHHHHHHHcCC
Confidence 22222211 000 001223455555321 4579999999998885
No 83
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=95.92 E-value=0.056 Score=54.08 Aligned_cols=108 Identities=23% Similarity=0.315 Sum_probs=62.4
Q ss_pred HHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeee
Q 015287 193 TEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM 272 (410)
Q Consensus 193 ~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i 272 (410)
++.+...++. +.+++|+|.|.|.+|+.+++.|...|++.|.|+|.+ .+...+..++.+. ..+
T Consensus 166 v~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~----------~~ra~~la~~~g~-------~~~ 227 (311)
T cd05213 166 VELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRT----------YERAEELAKELGG-------NAV 227 (311)
T ss_pred HHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC----------HHHHHHHHHHcCC-------eEE
Confidence 4444334443 789999999999999999999998887666688874 3444444443221 122
Q ss_pred cCCcccc--cccceEeecccCCcc---cccccccc--cceEEEecCCCC-CCHH
Q 015287 273 DLNDLLV--HECDVLVPCALGGVL---NKENAADV--KAKFIIEAANHP-TDPE 318 (410)
Q Consensus 273 ~~~~ll~--~~~DvliPaA~~~~I---~~~na~~i--~akiIvEgAN~p-~t~~ 318 (410)
+.+++.+ .++||+|-|...... -+.-.... +-++|++-+|.+ +.|+
T Consensus 228 ~~~~~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPrdi~~~ 281 (311)
T cd05213 228 PLDELLELLNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPRDIEPE 281 (311)
T ss_pred eHHHHHHHHhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCCCCchh
Confidence 2222221 368999988754433 11111111 235777777633 4443
No 84
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=95.91 E-value=0.18 Score=49.54 Aligned_cols=129 Identities=15% Similarity=0.206 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCC-CEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCc
Q 015287 185 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHG-GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL 263 (410)
Q Consensus 185 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G-akvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v 263 (410)
.+.|...+++. ..+.+++++++.|.|.|.+|+.+++.|.+.| .+|+ |.+.+ .+.+.+..++-...
T Consensus 105 D~~G~~~~l~~---~~~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~-v~~R~----------~~~a~~l~~~~~~~ 170 (278)
T PRK00258 105 DGIGFVRALEE---RLGVDLKGKRILILGAGGAARAVILPLLDLGVAEIT-IVNRT----------VERAEELAKLFGAL 170 (278)
T ss_pred cHHHHHHHHHh---ccCCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEE-EEeCC----------HHHHHHHHHHhhhc
Confidence 45666666542 2466789999999999999999999999999 5655 77764 23333333221111
Q ss_pred ccCCCCee-ecCCcccccccceEeecccCCccc-----ccccccc-cceEEEecCCCCCCHHHHHHHHhCCceEe
Q 015287 264 NDFQGGNA-MDLNDLLVHECDVLVPCALGGVLN-----KENAADV-KAKFIIEAANHPTDPEADEILSKKGVVIL 331 (410)
Q Consensus 264 ~~~~~~~~-i~~~~ll~~~~DvliPaA~~~~I~-----~~na~~i-~akiIvEgAN~p~t~~A~~iL~~rGI~v~ 331 (410)
. .... .+..+.+ .++||+|=|.-.+.-. +-....+ +-.+|++..-+|....--+.-+++|+.++
T Consensus 171 ~---~~~~~~~~~~~~-~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~~~~ 241 (278)
T PRK00258 171 G---KAELDLELQEEL-ADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLPTPFLAWAKAQGARTI 241 (278)
T ss_pred c---ceeecccchhcc-ccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCCCHHHHHHHHCcCeec
Confidence 0 0011 1111111 4689999876443321 1111223 24688899888853344556778888764
No 85
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=95.86 E-value=0.23 Score=53.48 Aligned_cols=182 Identities=17% Similarity=0.139 Sum_probs=117.7
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCccccCCCCCCCCchhHHHHHHH
Q 015287 113 SMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGLGVFFA 192 (410)
Q Consensus 113 s~~e~e~~~r~f~~~l~~~iG~~~dipapDvgt~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~ 192 (410)
+..|-..|...|++++...- |..-|-=.|++... ---+.+.|+.. .| ++ .+...-||-=+..+
T Consensus 221 ~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~~~n--af~iL~kyr~~---i~-~F----------nDDiQGTaaV~lAg 283 (559)
T PTZ00317 221 DDDEYYELLDEFMEAVSSRW-PNAVVQFEDFSNNH--CFDLLERYQNK---YR-CF----------NDDIQGTGAVIAAG 283 (559)
T ss_pred ChhhHHHHHHHHHHHHHHhC-CCeEEehhhcCCcc--HHHHHHHhccC---CC-Ee----------cccchhHHHHHHHH
Confidence 55667788999999997765 44334456776532 22345677632 11 11 12345688778888
Q ss_pred HHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHH----HCCC-------EEEEEECCCCceeCCCCCCHHHHHHHHHhCC
Q 015287 193 TEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH----EHGG-------KVVAVSDITGAIKNPNGIDVPALLKYKKSNK 261 (410)
Q Consensus 193 ~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~----~~Ga-------kvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g 261 (410)
+..+++..|.+++..||++.|.|..|-++|++|. +.|. ++. +.|++|-+++..+=++..-...+.+..
T Consensus 284 ll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~-~vD~~GLl~~~r~~~l~~~k~~fa~~~ 362 (559)
T PTZ00317 284 FLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFY-LVDSKGLVTTTRGDKLAKHKVPFARTD 362 (559)
T ss_pred HHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEE-EEcCCCeEeCCCCccccHHHHHHhccc
Confidence 8889998899999999999999999999999987 4686 665 899999999765411222222121110
Q ss_pred CcccCCCCeeecCCcc-cccccceEeeccc-CCccccccccccc----ceEEEecCCCCC
Q 015287 262 SLNDFQGGNAMDLNDL-LVHECDVLVPCAL-GGVLNKENAADVK----AKFIIEAANHPT 315 (410)
Q Consensus 262 ~v~~~~~~~~i~~~~l-l~~~~DvliPaA~-~~~I~~~na~~i~----akiIvEgAN~p~ 315 (410)
. .-++....+-.|+ -..+.||||=++. ++.+|++-++... =.||---+| |+
T Consensus 363 ~--~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLSN-Pt 419 (559)
T PTZ00317 363 I--SAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLSN-PT 419 (559)
T ss_pred c--ccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCC-CC
Confidence 0 0000001111222 3568899998885 7999999887653 357877777 54
No 86
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.82 E-value=0.27 Score=51.22 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=28.5
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
++|+|.|.|.||..+|..|.++|.+|++ .|.+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~-~D~~ 35 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIG-VDIN 35 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEE-EeCC
Confidence 6899999999999999999999999984 5653
No 87
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=95.82 E-value=0.03 Score=56.99 Aligned_cols=105 Identities=20% Similarity=0.301 Sum_probs=72.8
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhC
Q 015287 181 REAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN 260 (410)
Q Consensus 181 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~ 260 (410)
...-||.+.+-++..+ .+.-+.||+++|.|||.||+..|..|.-.|++|+ |++.+. +.+|....+
T Consensus 187 NrYGtgqS~~DgI~Ra---Tn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~Vi-VtEvDP---------I~AleA~Md-- 251 (420)
T COG0499 187 NRYGTGQSLLDGILRA---TNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVI-VTEVDP---------IRALEAAMD-- 251 (420)
T ss_pred cccccchhHHHHHHhh---hceeecCceEEEecccccchHHHHHhhcCCCeEE-EEecCc---------hHHHHHhhc--
Confidence 3456777766665543 3455899999999999999999999999999988 988752 444443322
Q ss_pred CCcccCCCCeeecCCcccccccceEeeccc-CCcccccccccccceEEE
Q 015287 261 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFII 308 (410)
Q Consensus 261 g~v~~~~~~~~i~~~~ll~~~~DvliPaA~-~~~I~~~na~~i~akiIv 308 (410)
+| +..+.++.. ...||||-|.. .++|+.+.....+=..|+
T Consensus 252 ----Gf---~V~~m~~Aa-~~gDifiT~TGnkdVi~~eh~~~MkDgaIl 292 (420)
T COG0499 252 ----GF---RVMTMEEAA-KTGDIFVTATGNKDVIRKEHFEKMKDGAIL 292 (420)
T ss_pred ----Cc---EEEEhHHhh-hcCCEEEEccCCcCccCHHHHHhccCCeEE
Confidence 22 333333322 34699999975 578888887777655554
No 88
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=95.79 E-value=0.022 Score=60.29 Aligned_cols=169 Identities=15% Similarity=0.148 Sum_probs=99.6
Q ss_pred EEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhC--C-CcccCCCCeeecCCcccc--cccc
Q 015287 209 FAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN--K-SLNDFQGGNAMDLNDLLV--HECD 283 (410)
Q Consensus 209 vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~--g-~v~~~~~~~~i~~~~ll~--~~~D 283 (410)
|.|+|+|++|+++|+.|.++|.+|+ +-|.+ .+.+.+..+.. + .+..+ -+.+++.+ .+||
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~-v~drt----------~~~~~~l~~~~~~g~~~~~~-----~s~~e~v~~l~~~d 65 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVS-VYNRT----------PEKTDEFLAEHAKGKKIVGA-----YSIEEFVQSLERPR 65 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEE-EEeCC----------HHHHHHHHhhccCCCCceec-----CCHHHHHhhcCCCC
Confidence 7899999999999999999999987 55653 34444443331 1 11111 12234442 2689
Q ss_pred eEeecccCCccccccc----ccc-cceEEEecCCCC--CCHHHHHHHHhCCceEeccccccccCce---------e----
Q 015287 284 VLVPCALGGVLNKENA----ADV-KAKFIIEAANHP--TDPEADEILSKKGVVILPDIYANSGGVT---------V---- 343 (410)
Q Consensus 284 vliPaA~~~~I~~~na----~~i-~akiIvEgAN~p--~t~~A~~iL~~rGI~v~PD~laNaGGVi---------~---- 343 (410)
+++-|...+....+.+ +.+ .-++|+++.|.- .|.+..+.|.++||.++---+ +||.- +
T Consensus 66 vIil~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapV--sGG~~gA~~G~~im~GG~~ 143 (467)
T TIGR00873 66 KIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGV--SGGEEGARKGPSIMPGGSA 143 (467)
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCC--CCCHHHHhcCCcCCCCCCH
Confidence 8887765543333332 223 346999999953 355566789999999873211 22221 0
Q ss_pred hhHHHhhhc----cc-------CCC--------CHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH
Q 015287 344 SYFEWVQNI----QG-------FMW--------EEEKVNHELKRYMMSAFKDIKTMCQ-THNCNLRMGAFTL 395 (410)
Q Consensus 344 s~~E~~qn~----~~-------~~w--------~~~~v~~~l~~~m~~~~~~v~~~a~-~~~~~~r~aA~~~ 395 (410)
..||.++.+ .. ..| --.-|+..++..+...+.+.++..+ +.++++.+.+.++
T Consensus 144 ~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~ 215 (467)
T TIGR00873 144 EAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVF 215 (467)
T ss_pred HHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 122323221 00 001 1234666777777888888888774 6888877665554
No 89
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.73 E-value=0.041 Score=50.79 Aligned_cols=124 Identities=23% Similarity=0.209 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCC
Q 015287 184 ATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKS 262 (410)
Q Consensus 184 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~ 262 (410)
-|+.-.+..++..++++|.+++++++.|.|. |.+|+.+++.|.+.|++|+ +.+.+ .+.+.+..+.-..
T Consensus 6 ~ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~-l~~R~----------~~~~~~l~~~l~~ 74 (194)
T cd01078 6 TTAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVV-LVGRD----------LERAQKAADSLRA 74 (194)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEcCC----------HHHHHHHHHHHHh
Confidence 5777777888888888899999999999996 9999999999999999887 44443 2333322221100
Q ss_pred cccCCCCeee---cCCccc--ccccceEeecccCCcccccccc-ccc-ceEEEecCCCC-CCHHH
Q 015287 263 LNDFQGGNAM---DLNDLL--VHECDVLVPCALGGVLNKENAA-DVK-AKFIIEAANHP-TDPEA 319 (410)
Q Consensus 263 v~~~~~~~~i---~~~~ll--~~~~DvliPaA~~~~I~~~na~-~i~-akiIvEgAN~p-~t~~A 319 (410)
-.+. ..... +.+++. -.+||++|-|.-.+..+..... ..+ .++|++-+..| ++++.
T Consensus 75 ~~~~-~~~~~~~~~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~~~~~~~~~~~ 138 (194)
T cd01078 75 RFGE-GVGAVETSDDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAADVNAVPPVGIEG 138 (194)
T ss_pred hcCC-cEEEeeCCCHHHHHHHHhcCCEEEECCCCCceechhhhcccCceeEEEEccCCCCCCccc
Confidence 0000 00011 112221 1379999988765542221122 223 36888866665 56653
No 90
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=95.72 E-value=0.19 Score=49.53 Aligned_cols=133 Identities=20% Similarity=0.254 Sum_probs=78.6
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCC
Q 015287 183 AATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNK 261 (410)
Q Consensus 183 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g 261 (410)
.-|+|-.+--+.+.++++|.+++..+|+|.|. |.+|+.+|+.|..++.++.-+- . ++ +-.+-+.|.
T Consensus 144 s~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~-r-~a----ea~~rq~l~------- 210 (351)
T COG5322 144 SHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLL-R-DA----EARNRQRLT------- 210 (351)
T ss_pred ccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEec-c-cH----Hhhhhhhhh-------
Confidence 36888888888888889999999999999997 9999999999998887765332 1 10 111111111
Q ss_pred CcccCCCC-eeecCCcccccccceEeeccc--CCcccccccccccceEEEecCCCCCCHHHHHHHHhCC-ceEecc
Q 015287 262 SLNDFQGG-NAMDLNDLLVHECDVLVPCAL--GGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKG-VVILPD 333 (410)
Q Consensus 262 ~v~~~~~~-~~i~~~~ll~~~~DvliPaA~--~~~I~~~na~~i~akiIvEgAN~p~t~~A~~iL~~rG-I~v~PD 333 (410)
.+..-++. ...+.+.-+-.+.|+++-|+. +..|+++-.+. .| +|++++- |- +.+...+..| |.++|.
T Consensus 211 ~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~~~g~~I~pq~lkp-g~-~ivD~g~-P~--dvd~~vk~~~~V~Ii~G 281 (351)
T COG5322 211 LLQEELGRGKIMSLDYALPQEDILVWVASMPKGVEIFPQHLKP-GC-LIVDGGY-PK--DVDTSVKNVGGVRIIPG 281 (351)
T ss_pred hcccccCCCeeeeccccccccceEEEEeecCCCceechhhccC-Ce-EEEcCCc-Cc--ccccccccCCCeEEecC
Confidence 11111222 234444333344455555554 45677766654 33 5666653 32 1122334444 777664
No 91
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.71 E-value=0.2 Score=52.22 Aligned_cols=104 Identities=21% Similarity=0.318 Sum_probs=66.7
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeee-cCCccccc
Q 015287 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVH 280 (410)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i-~~~~ll~~ 280 (410)
.+|.|+||.|.|+|++|+.+|+.+...|.+|++ .|.+.. .. . .+.... +-++++ .
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~-~d~~~~----------------~~---~---~~~~~~~~l~ell-~ 202 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYF-YDIEDK----------------LP---L---GNARQVGSLEELL-A 202 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE-ECCCcc----------------cc---c---CCceecCCHHHHH-h
Confidence 469999999999999999999999999999985 343210 00 0 001111 234454 3
Q ss_pred ccceEeeccc-----CCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q 015287 281 ECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV 329 (410)
Q Consensus 281 ~~DvliPaA~-----~~~I~~~na~~i~-akiIvEgAN~p~-t~~A-~~iL~~rGI~ 329 (410)
.||+++-+.- .+.|+++....++ -.+++--|-+++ +.+| .+.|++.-|.
T Consensus 203 ~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 259 (409)
T PRK11790 203 QSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLA 259 (409)
T ss_pred hCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCce
Confidence 5788877652 2345555555554 357777777774 4444 4677776664
No 92
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.71 E-value=0.15 Score=45.35 Aligned_cols=53 Identities=23% Similarity=0.264 Sum_probs=43.6
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
.+.|..|+.. +++++|.+++|++|.|.| -..||.-++.+|.++|+.|. +++++
T Consensus 8 ~p~t~~a~~~----ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~-~~~~~ 61 (140)
T cd05212 8 VSPVAKAVKE----LLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVY-SCDWK 61 (140)
T ss_pred cccHHHHHHH----HHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EeCCC
Confidence 3567776654 456679999999999999 48899999999999999998 67764
No 93
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=95.65 E-value=0.12 Score=52.26 Aligned_cols=32 Identities=34% Similarity=0.626 Sum_probs=28.0
Q ss_pred eEEEEccChHHHHHHHHHHHCC----CEEEEEECCC
Q 015287 208 KFAIQGFGNVGSWAAKFFHEHG----GKVVAVSDIT 239 (410)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~G----akvVaVsD~~ 239 (410)
||+|.|||.+|+.+++.|.+.+ ..|++|.|..
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~ 36 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELA 36 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCC
Confidence 5899999999999999998764 8999998853
No 94
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=95.63 E-value=0.15 Score=54.74 Aligned_cols=156 Identities=21% Similarity=0.235 Sum_probs=89.6
Q ss_pred CCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeee-cCCcccc
Q 015287 201 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV 279 (410)
Q Consensus 201 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i-~~~~ll~ 279 (410)
|.++.|+||.|.|+|++|+.+|+.|...|.+|++ .|.+. +.+.. .+. +.... +.++++
T Consensus 133 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~-~d~~~--------~~~~~----~~~-------g~~~~~~l~ell- 191 (525)
T TIGR01327 133 GTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLA-YDPYI--------SPERA----EQL-------GVELVDDLDELL- 191 (525)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEE-ECCCC--------ChhHH----Hhc-------CCEEcCCHHHHH-
Confidence 4468999999999999999999999999999985 34321 11111 110 11222 234555
Q ss_pred cccceEeeccc-----CCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce-EeccccccccCceehhHHHhh
Q 015287 280 HECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV-ILPDIYANSGGVTVSYFEWVQ 350 (410)
Q Consensus 280 ~~~DvliPaA~-----~~~I~~~na~~i~-akiIvEgAN~p~-t~~A-~~iL~~rGI~-v~PD~laNaGGVi~s~~E~~q 350 (410)
.+||+++-|.- .+.|+++....++ -.+++.-|-+++ ..+| .+.|++..|. ..=|+..+=--. -+.+--..
T Consensus 192 ~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~ 270 (525)
T TIGR01327 192 ARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPT-DNPLFDLD 270 (525)
T ss_pred hhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCC-CChhhcCC
Confidence 37899987763 4456655555543 247888888884 5444 4778877775 333433322211 12211112
Q ss_pred hc---ccCCCCHHHHHHHHHHHHHHHHHHHH
Q 015287 351 NI---QGFMWEEEKVNHELKRYMMSAFKDIK 378 (410)
Q Consensus 351 n~---~~~~w~~~~v~~~l~~~m~~~~~~v~ 378 (410)
|. .|..|.-++...++...+.+++.+.+
T Consensus 271 nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~ 301 (525)
T TIGR01327 271 NVIATPHLGASTREAQENVATQVAEQVLDAL 301 (525)
T ss_pred CeEECCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 21 35555555556555555545554443
No 95
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=95.51 E-value=0.042 Score=55.20 Aligned_cols=107 Identities=18% Similarity=0.232 Sum_probs=65.9
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccccc
Q 015287 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE 281 (410)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~ 281 (410)
..++|+||.|.|+|++|+.+|+.|...|.+|+++ |.+..- ..++ ..+.. ..+-++++ .+
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~-~~~~~~--~~~~---------------~~~~~--~~~l~e~l-~~ 190 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCW-SRSRKS--WPGV---------------QSFAG--REELSAFL-SQ 190 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE-eCCCCC--CCCc---------------eeecc--cccHHHHH-hc
Confidence 3588999999999999999999999999999865 332100 0010 01100 01112223 46
Q ss_pred cceEeeccc-----CCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q 015287 282 CDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV 329 (410)
Q Consensus 282 ~DvliPaA~-----~~~I~~~na~~i~-akiIvEgAN~p~-t~~A-~~iL~~rGI~ 329 (410)
||+++-|.- .+.|+++....++ -.+++.-+-+++ ..+| -+.|++.-|.
T Consensus 191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~ 246 (312)
T PRK15469 191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVK 246 (312)
T ss_pred CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCee
Confidence 888887763 2344444444443 348888888884 4444 3667777664
No 96
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=95.45 E-value=0.066 Score=53.05 Aligned_cols=169 Identities=14% Similarity=0.191 Sum_probs=94.1
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccccccceEe
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 286 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~~Dvli 286 (410)
.+|.|+|.|++|..+++.|.+.|.+|+ +.|.+ .+.+.+..+.+.. ...++.++. .+||++|
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~-v~d~~----------~~~~~~~~~~g~~-------~~~s~~~~~-~~aDvVi 62 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQ-VFDVN----------PQAVDALVDKGAT-------PAASPAQAA-AGAEFVI 62 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEE-EEcCC----------HHHHHHHHHcCCc-------ccCCHHHHH-hcCCEEE
Confidence 379999999999999999999999886 55653 2333333322110 011223333 4789999
Q ss_pred ecccCCc-----cccc--ccccc-cceEEEecCCCCC--CHHHHHHHHhCCceEeccc-------cccccCce--e----
Q 015287 287 PCALGGV-----LNKE--NAADV-KAKFIIEAANHPT--DPEADEILSKKGVVILPDI-------YANSGGVT--V---- 343 (410)
Q Consensus 287 PaA~~~~-----I~~~--na~~i-~akiIvEgAN~p~--t~~A~~iL~~rGI~v~PD~-------laNaGGVi--~---- 343 (410)
-|.-... +... -.+.+ +-++|++-...+. +.+..+.+.++|+.++ |. -+..|-.+ +
T Consensus 63 ~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~l-dapV~g~~~~a~~g~l~~~~gg~~ 141 (296)
T PRK15461 63 TMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMM-DVPVGRTSDNAITGTLLLLAGGTA 141 (296)
T ss_pred EecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEE-EccCCCCHHHHHhCcEEEEECCCH
Confidence 8865432 2211 11223 3467887777653 4566788999998876 21 11222221 1
Q ss_pred hhHHHhhh----cc-cCCC-C-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 015287 344 SYFEWVQN----IQ-GFMW-E-------EEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTL 395 (410)
Q Consensus 344 s~~E~~qn----~~-~~~w-~-------~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~ 395 (410)
..+|.++. +. ..++ . -+-++.-+...+...+.+.+..+++.|+++.....++
T Consensus 142 ~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l 206 (296)
T PRK15461 142 EQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVM 206 (296)
T ss_pred HHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 12222221 11 1111 1 0112333444445566778888899999987765443
No 97
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.42 E-value=0.27 Score=48.66 Aligned_cols=132 Identities=16% Similarity=0.113 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcc
Q 015287 185 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLN 264 (410)
Q Consensus 185 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~ 264 (410)
-+.|+..+++. .+.++++++|.|.|.|.+|+.++..|.+.|++=|.|.|.+ .+...+..+.-. .
T Consensus 110 D~~G~~~~l~~----~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~----------~~ka~~la~~l~--~ 173 (284)
T PRK12549 110 DWSGFAESFRR----GLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD----------PARAAALADELN--A 173 (284)
T ss_pred CHHHHHHHHHh----hccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC----------HHHHHHHHHHHH--h
Confidence 46777777763 3346788999999999999999999999998545588874 223322222100 0
Q ss_pred cCCCCeeecCCccc--ccccceEeecccCCccc-cc---ccccc-cceEEEecCCCCCCHHHHHHHHhCCceEec
Q 015287 265 DFQGGNAMDLNDLL--VHECDVLVPCALGGVLN-KE---NAADV-KAKFIIEAANHPTDPEADEILSKKGVVILP 332 (410)
Q Consensus 265 ~~~~~~~i~~~~ll--~~~~DvliPaA~~~~I~-~~---na~~i-~akiIvEgAN~p~t~~A~~iL~~rGI~v~P 332 (410)
.++.......+++. -.++|++|-|.--+.-. +. +...+ +..+|.+-.-+|....--+.-+++|..++.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~~~~~ 248 (284)
T PRK12549 174 RFPAARATAGSDLAAALAAADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLETELLRAARALGCRTLD 248 (284)
T ss_pred hCCCeEEEeccchHhhhCCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCCCCCHHHHHHHHCCCeEec
Confidence 11111112222221 14699999885222110 00 11123 335788888888644455666778877643
No 98
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=95.42 E-value=0.01 Score=52.00 Aligned_cols=106 Identities=17% Similarity=0.316 Sum_probs=55.8
Q ss_pred CCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccccccceE
Q 015287 206 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVL 285 (410)
Q Consensus 206 g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~~Dvl 285 (410)
-.||.|+|.|+||.++++.|.+.|..|++|...+ .+...+... .++.....+.++++ .++|++
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs----------~~sa~~a~~------~~~~~~~~~~~~~~-~~aDlv 72 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRS----------PASAERAAA------FIGAGAILDLEEIL-RDADLV 72 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCH----------H-HHHHHHC--------TT-----TTGGG-CC-SEE
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC----------ccccccccc------cccccccccccccc-ccCCEE
Confidence 4689999999999999999999999999886653 111111111 12222234455555 479999
Q ss_pred eecccCCcccccccccc-------cceEEEecCCCCCCHHHHHHHHhCCceE
Q 015287 286 VPCALGGVLNKENAADV-------KAKFIIEAANHPTDPEADEILSKKGVVI 330 (410)
Q Consensus 286 iPaA~~~~I~~~na~~i-------~akiIvEgAN~p~t~~A~~iL~~rGI~v 330 (410)
+-|.--+.|.+ -++.+ .-++|+=-+ +-.+.+.-+=++++|..+
T Consensus 73 ~iavpDdaI~~-va~~La~~~~~~~g~iVvHtS-Ga~~~~vL~p~~~~Ga~~ 122 (127)
T PF10727_consen 73 FIAVPDDAIAE-VAEQLAQYGAWRPGQIVVHTS-GALGSDVLAPARERGAIV 122 (127)
T ss_dssp EE-S-CCHHHH-HHHHHHCC--S-TT-EEEES--SS--GGGGHHHHHTT-EE
T ss_pred EEEechHHHHH-HHHHHHHhccCCCCcEEEECC-CCChHHhhhhHHHCCCeE
Confidence 99875555532 12221 335665443 224444445567777654
No 99
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=95.41 E-value=0.08 Score=47.77 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=29.1
Q ss_pred CeEEEEccChHHHHHHHHHH-HCCCEEEEEECCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFH-EHGGKVVAVSDIT 239 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~-~~GakvVaVsD~~ 239 (410)
.||+|-|||.+|+.+++.+. +....||+|.|..
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~ 34 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPA 34 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESS
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEeccc
Confidence 38999999999999999997 4568999999974
No 100
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.41 E-value=0.059 Score=53.41 Aligned_cols=170 Identities=17% Similarity=0.208 Sum_probs=96.4
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCee-ecCCccccc--ccc
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNA-MDLNDLLVH--ECD 283 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~-i~~~~ll~~--~~D 283 (410)
++|.++|+|++|+.+++.|.+.|.+|+ +.|.+ .+.+.+..+. + ... -+++++.+. .+|
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~-v~dr~----------~~~~~~~~~~-g-------~~~~~s~~~~~~~~~~ad 61 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVV-GYDVN----------QEAVDVAGKL-G-------ITARHSLEELVSKLEAPR 61 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEE-EEECC----------HHHHHHHHHC-C-------CeecCCHHHHHHhCCCCC
Confidence 379999999999999999999999987 66764 2333333221 2 111 133444432 278
Q ss_pred eEeecccCCcccccc----ccccc-ceEEEecCCC-C-CCHHHHHHHHhCCceEecccc------ccccC-cee----hh
Q 015287 284 VLVPCALGGVLNKEN----AADVK-AKFIIEAANH-P-TDPEADEILSKKGVVILPDIY------ANSGG-VTV----SY 345 (410)
Q Consensus 284 vliPaA~~~~I~~~n----a~~i~-akiIvEgAN~-p-~t~~A~~iL~~rGI~v~PD~l------aNaGG-Vi~----s~ 345 (410)
+++-|.-.....++. ...++ -++|++-++. | .+.+..+.+.++|+.++---+ +-.|= +++ ..
T Consensus 62 vVi~~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG~~~~ 141 (299)
T PRK12490 62 TIWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGGDKEI 141 (299)
T ss_pred EEEEEecCchHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecCCHHH
Confidence 888775443222222 22232 3588888776 4 345666789999998763111 11121 111 12
Q ss_pred HHHhhh----ccc----CCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHH
Q 015287 346 FEWVQN----IQG----FMW--------EEEKVNHELKRYMMSAFKDIKTMCQTHN--CNLRMGAFTL 395 (410)
Q Consensus 346 ~E~~qn----~~~----~~w--------~~~~v~~~l~~~m~~~~~~v~~~a~~~~--~~~r~aA~~~ 395 (410)
|+.++. +.. .++ .-+-++.-+...+...+.|-+..+++.+ +++.+...++
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~ 209 (299)
T PRK12490 142 YDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLW 209 (299)
T ss_pred HHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHH
Confidence 233322 111 011 0123445555566678888888999988 8877665554
No 101
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.41 E-value=0.87 Score=47.60 Aligned_cols=150 Identities=15% Similarity=0.211 Sum_probs=85.1
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhCCCCceecCccccCC-CCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHH
Q 015287 140 APDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIDLG-GSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVG 218 (410)
Q Consensus 140 apDvgt~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~G-Gs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG 218 (410)
|-+.||....+..++..- +-+||-+-.- ++ ...+.+|.++.-..++..-.++++++|.|.|.|.+|
T Consensus 127 A~~~g~~g~~L~~lf~~A---------~~~aKrVrteT~I----~~~~vSv~~~Av~la~~~~~~l~~kkvlviGaG~~a 193 (414)
T PRK13940 127 SKKNHAIGKELDRVFQKV---------FATAKRVRSETRI----GHCPVSVAFSAITLAKRQLDNISSKNVLIIGAGQTG 193 (414)
T ss_pred HHHcCCchHHHHHHHHHH---------HHHHHHHHhccCC----CCCCcCHHHHHHHHHHHHhcCccCCEEEEEcCcHHH
Confidence 557777778888777642 1223222100 00 011122333332333333245899999999999999
Q ss_pred HHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccc--cccceEeeccc--CCcc
Q 015287 219 SWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV--HECDVLVPCAL--GGVL 294 (410)
Q Consensus 219 ~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~--~~~DvliPaA~--~~~I 294 (410)
+.+++.|.+.|++-+.|+..+ .+......++.+ ....++-+++.+ .++||+|-|.. ..+|
T Consensus 194 ~~va~~L~~~g~~~I~V~nRt----------~~ra~~La~~~~------~~~~~~~~~l~~~l~~aDiVI~aT~a~~~vi 257 (414)
T PRK13940 194 ELLFRHVTALAPKQIMLANRT----------IEKAQKITSAFR------NASAHYLSELPQLIKKADIIIAAVNVLEYIV 257 (414)
T ss_pred HHHHHHHHHcCCCEEEEECCC----------HHHHHHHHHHhc------CCeEecHHHHHHHhccCCEEEECcCCCCeeE
Confidence 999999999998666688875 233333333211 112222233322 47999999875 3466
Q ss_pred cccccccccceEEEecCCCC-CCHHH
Q 015287 295 NKENAADVKAKFIIEAANHP-TDPEA 319 (410)
Q Consensus 295 ~~~na~~i~akiIvEgAN~p-~t~~A 319 (410)
+.+.... +-.++++-|+.. +.|+.
T Consensus 258 ~~~~~~~-~~~~~iDLavPRdidp~v 282 (414)
T PRK13940 258 TCKYVGD-KPRVFIDISIPQALDPKL 282 (414)
T ss_pred CHHHhCC-CCeEEEEeCCCCCCCccc
Confidence 7655432 345888887644 45543
No 102
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=95.34 E-value=0.19 Score=50.81 Aligned_cols=108 Identities=23% Similarity=0.333 Sum_probs=71.3
Q ss_pred CCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCccccc
Q 015287 201 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH 280 (410)
Q Consensus 201 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~ 280 (410)
|.++.|+|+.|.|+|.+|+.+|+.++-.|.+|+ ..|.+. . .+ .. +.. +...++.++++ .
T Consensus 141 ~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~-y~~~~~-------~-~~-~~----~~~------~~~y~~l~ell-~ 199 (324)
T COG1052 141 GFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVL-YYDRSP-------N-PE-AE----KEL------GARYVDLDELL-A 199 (324)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEE-EECCCC-------C-hH-HH----hhc------CceeccHHHHH-H
Confidence 457999999999999999999999998999998 455432 2 11 10 000 12334444554 4
Q ss_pred ccceEeecc-----cCCcccccccccccc-eEEEecCCCCC-CHHH-HHHHHhCCce
Q 015287 281 ECDVLVPCA-----LGGVLNKENAADVKA-KFIIEAANHPT-DPEA-DEILSKKGVV 329 (410)
Q Consensus 281 ~~DvliPaA-----~~~~I~~~na~~i~a-kiIvEgAN~p~-t~~A-~~iL~~rGI~ 329 (410)
++|+++-.. ..+.||++...+.|- -+++--|-+++ ..+| .+.|++.-|.
T Consensus 200 ~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~ 256 (324)
T COG1052 200 ESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIA 256 (324)
T ss_pred hCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcc
Confidence 788887655 234556555555544 58888888885 4444 4778887775
No 103
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=95.32 E-value=0.046 Score=58.28 Aligned_cols=174 Identities=13% Similarity=0.098 Sum_probs=103.6
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHh---CCCcccCCCCeeecCCccccc--c
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKS---NKSLNDFQGGNAMDLNDLLVH--E 281 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~---~g~v~~~~~~~~i~~~~ll~~--~ 281 (410)
.+|.++|+|++|+++|+-|.++|.+|+ |-|.+ .+...+..+. .|. ..+.. .-+++++.+. .
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~-V~NRt----------~~k~~~l~~~~~~~Ga-~~~~~--a~s~~e~v~~l~~ 72 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRT----------TSKVDETVERAKKEGN-LPLYG--FKDPEDFVLSIQK 72 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEE-EECCC----------HHHHHHHHHhhhhcCC-ccccc--CCCHHHHHhcCCC
Confidence 479999999999999999999999987 76764 3333333321 111 00000 1133455432 5
Q ss_pred cceEeecccCCccccc----ccccc-cceEEEecCCCC--CCHHHHHHHHhCCceEeccc------cccccCce-e----
Q 015287 282 CDVLVPCALGGVLNKE----NAADV-KAKFIIEAANHP--TDPEADEILSKKGVVILPDI------YANSGGVT-V---- 343 (410)
Q Consensus 282 ~DvliPaA~~~~I~~~----na~~i-~akiIvEgAN~p--~t~~A~~iL~~rGI~v~PD~------laNaGGVi-~---- 343 (410)
||+++-|-..+...++ -.+.+ .-++|+++.|.. .|.+..+.++++|+.++=-- -|-.|-.+ +
T Consensus 73 ~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~~ 152 (493)
T PLN02350 73 PRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGSF 152 (493)
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCCH
Confidence 8999887643332222 22333 457999999985 46677788999999987111 11122211 1
Q ss_pred hhHHHhhh----ccc-------CCC--------CHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH
Q 015287 344 SYFEWVQN----IQG-------FMW--------EEEKVNHELKRYMMSAFKDIKTMCQT-HNCNLRMGAFT 394 (410)
Q Consensus 344 s~~E~~qn----~~~-------~~w--------~~~~v~~~l~~~m~~~~~~v~~~a~~-~~~~~r~aA~~ 394 (410)
..||-++. +.. ..| --+-|+.-++..+...+.|.+..+++ .|+++.+.+.+
T Consensus 153 ~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~v 223 (493)
T PLN02350 153 EAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEV 223 (493)
T ss_pred HHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 11222221 110 011 12346677777778888899999888 59988776655
No 104
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.28 E-value=0.057 Score=53.61 Aligned_cols=53 Identities=19% Similarity=0.142 Sum_probs=45.8
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccCh-HHHHHHHHHHHCCCEEEEEECCC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakvVaVsD~~ 239 (410)
.++|..|++..+ ++++.+++|++++|.|-++ ||.-++.+|.++|+.|. +++++
T Consensus 139 ~PcTp~av~~ll----~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVt-v~hs~ 192 (285)
T PRK10792 139 RPCTPRGIMTLL----ERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVT-VCHRF 192 (285)
T ss_pred CCCCHHHHHHHH----HHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEE-EEECC
Confidence 578999887654 5668899999999999988 99999999999999887 77764
No 105
>PLN00203 glutamyl-tRNA reductase
Probab=95.25 E-value=0.74 Score=49.54 Aligned_cols=112 Identities=14% Similarity=0.194 Sum_probs=69.6
Q ss_pred HHHHHHhCC-CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeee
Q 015287 194 EALLAEHGK-SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM 272 (410)
Q Consensus 194 ~~~~~~~g~-~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i 272 (410)
+.+.+.++. ++.+++|.|.|.|.+|+.+++.|...|++-|.|.+.+ .+.+.+...+.+.. .....
T Consensus 253 ~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs----------~era~~La~~~~g~----~i~~~ 318 (519)
T PLN00203 253 ELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS----------EERVAALREEFPDV----EIIYK 318 (519)
T ss_pred HHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC----------HHHHHHHHHHhCCC----ceEee
Confidence 333345664 5899999999999999999999999997544466654 23443333322111 00111
Q ss_pred cCCccc--ccccceEeecc--cCCccccccccccc--------ceEEEecCCCC-CCHHH
Q 015287 273 DLNDLL--VHECDVLVPCA--LGGVLNKENAADVK--------AKFIIEAANHP-TDPEA 319 (410)
Q Consensus 273 ~~~~ll--~~~~DvliPaA--~~~~I~~~na~~i~--------akiIvEgAN~p-~t~~A 319 (410)
+.+++. -.++||+|-|. ...+|+.+.++.+. -+++++-|... +.|+.
T Consensus 319 ~~~dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v 378 (519)
T PLN00203 319 PLDEMLACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACV 378 (519)
T ss_pred cHhhHHHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCcccc
Confidence 222222 24799999885 35577877766642 24888888754 55654
No 106
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.24 E-value=0.06 Score=53.50 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=44.6
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChH-HHHHHHHHHHCCCEEEEEECC
Q 015287 181 REAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNV-GSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 181 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnV-G~~~a~~L~~~GakvVaVsD~ 238 (410)
-.+.|..|+... +++++.+++|++|+|.|.|++ |+.++.+|.++|+.|. ++++
T Consensus 137 ~~PcTp~aii~l----L~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt-~~hs 190 (285)
T PRK14189 137 FRPCTPYGVMKM----LESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVT-ICHS 190 (285)
T ss_pred CcCCCHHHHHHH----HHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EecC
Confidence 357898888655 556789999999999999877 9999999999999997 5554
No 107
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=95.21 E-value=0.24 Score=50.43 Aligned_cols=32 Identities=31% Similarity=0.571 Sum_probs=27.9
Q ss_pred CeEEEEccChHHHHHHHHHHHC----CCEEEEEECC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEH----GGKVVAVSDI 238 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~----GakvVaVsD~ 238 (410)
.+|+|.|||.+|+.+.+.|.+. ..++|||-|.
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~ 37 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL 37 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC
Confidence 4899999999999999999874 5789998774
No 108
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.21 E-value=0.064 Score=53.32 Aligned_cols=53 Identities=28% Similarity=0.293 Sum_probs=45.9
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccCh-HHHHHHHHHHHCCCEEEEEECCC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakvVaVsD~~ 239 (410)
.++|..|++..+ +.++.+++|++|+|.|-++ ||.-++.+|..+|+.|. +++++
T Consensus 144 ~PcTp~av~~ll----~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt-v~hs~ 197 (287)
T PRK14176 144 VPCTPHGVIRAL----EEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVS-VCHVF 197 (287)
T ss_pred CCCcHHHHHHHH----HHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEE-EEecc
Confidence 578999987654 4678999999999999988 99999999999999987 77763
No 109
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.19 E-value=0.12 Score=51.30 Aligned_cols=93 Identities=17% Similarity=0.244 Sum_probs=67.0
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN 260 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~ 260 (410)
.++|.+|+... +++++.+++|++|+|.| ...||.-++.+|.++++.|. +++++.. |++
T Consensus 139 ~PcTp~avi~l----l~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt-~chs~T~-------~l~--------- 197 (284)
T PRK14177 139 LPCTPYGMVLL----LKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVT-LCHSKTQ-------NLP--------- 197 (284)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCCC-------CHH---------
Confidence 57899998764 45678999999999999 47899999999999999987 8876420 111
Q ss_pred CCcccCCCCeeecCCcccccccceEeeccc-CCcccccccccccceEEEecCC
Q 015287 261 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEAAN 312 (410)
Q Consensus 261 g~v~~~~~~~~i~~~~ll~~~~DvliPaA~-~~~I~~~na~~i~akiIvEgAN 312 (410)
-+...+||+|-|.. .+.|+.+..+. .|-+|==|-|
T Consensus 198 ----------------~~~~~ADIvIsAvGk~~~i~~~~ik~-gavVIDvGin 233 (284)
T PRK14177 198 ----------------SIVRQADIIVGAVGKPEFIKADWISE-GAVLLDAGYN 233 (284)
T ss_pred ----------------HHHhhCCEEEEeCCCcCccCHHHcCC-CCEEEEecCc
Confidence 02347888887764 56777777665 4444433444
No 110
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.18 E-value=0.056 Score=54.07 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=45.4
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccC-hHHHHHHHHHHHCCCEEEEEECCC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFG-NVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
.+.|..|+... +++++.+++|++|+|+|-| .||+.+|.+|.++|+.|+ +++++
T Consensus 139 ~PcTp~aii~l----L~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVt-v~~~~ 192 (301)
T PRK14194 139 TPCTPSGCLRL----LEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVT-VVHSR 192 (301)
T ss_pred CCCcHHHHHHH----HHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EECCC
Confidence 47898888665 4566899999999999996 999999999999999998 77654
No 111
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.09 E-value=0.08 Score=56.68 Aligned_cols=35 Identities=23% Similarity=0.148 Sum_probs=31.1
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
..+.+|+|.|.|.+|..++..+...|++|+ +.|.+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~-a~D~~ 197 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVR-AFDTR 197 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 468999999999999999999999999866 67764
No 112
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.06 E-value=0.075 Score=48.43 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=40.0
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccC-hHHHHHHHHHHHCCCEEEEEECCC
Q 015287 181 REAATGLGVFFATEALLAEHGKSISNMKFAIQGFG-NVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 181 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
-.+.|..|+...++ ..+.+++|++|+|.|-+ .||.-++.+|.++|+.|. +++++
T Consensus 15 ~~PcTp~aii~lL~----~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt-~~h~~ 69 (160)
T PF02882_consen 15 FVPCTPLAIIELLE----YYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVT-ICHSK 69 (160)
T ss_dssp S--HHHHHHHHHHH----HTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEE-EE-TT
T ss_pred CcCCCHHHHHHHHH----hcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEE-eccCC
Confidence 35789988876654 57889999999999986 599999999999999998 78774
No 113
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=95.04 E-value=0.05 Score=55.18 Aligned_cols=90 Identities=20% Similarity=0.280 Sum_probs=53.3
Q ss_pred EEEEccChHHHHHHHHHHH-CCCEEEEEECCCCceeCCCCCCHHHHHHHHHh--CCCcccCCC-------Ce-ee--cCC
Q 015287 209 FAIQGFGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKS--NKSLNDFQG-------GN-AM--DLN 275 (410)
Q Consensus 209 vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~--~g~v~~~~~-------~~-~i--~~~ 275 (410)
|+|.|||.+|+.+++.+.+ .+.+||||+|.+ ++........ ..+...++. .. .+ +.+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~----------~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~e 70 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTS----------PDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLE 70 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCC----------hHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHH
Confidence 5899999999999998764 578999999953 2322111111 111111111 00 11 234
Q ss_pred cccccccceEeecccCCcccccccccc---cceEEEec
Q 015287 276 DLLVHECDVLVPCALGGVLNKENAADV---KAKFIIEA 310 (410)
Q Consensus 276 ~ll~~~~DvliPaA~~~~I~~~na~~i---~akiIvEg 310 (410)
+++ .+||++++|. +...+..|+... ++|.|.-+
T Consensus 71 eLl-~~vDiVve~T-p~~~~~~na~~~~~~GakaVl~~ 106 (333)
T TIGR01546 71 DLL-EKVDIVVDAT-PGGIGAKNKPLYEKAGVKAIFQG 106 (333)
T ss_pred HHh-hcCCEEEECC-CCCCChhhHHHHHhCCcCEEEEC
Confidence 565 4799999996 666666666543 55544444
No 114
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=94.99 E-value=0.32 Score=50.81 Aligned_cols=33 Identities=33% Similarity=0.495 Sum_probs=28.9
Q ss_pred CeEEEEccChHHHHHHHHHHH-CCCEEEEEECCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDIT 239 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~~ 239 (410)
.||+|-|||.+|+.+++.+.+ .+.+||+|-|..
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~ 119 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPF 119 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCC
Confidence 499999999999999999875 689999997743
No 115
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.94 E-value=0.33 Score=46.85 Aligned_cols=171 Identities=15% Similarity=0.114 Sum_probs=85.9
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEE--EEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeee-cCCcccccccc
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKV--VAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECD 283 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~Gakv--VaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~D 283 (410)
++|.|+|+|++|+.+++.|.+.|..+ +.++|.+ .+.+.+..+.. ++.... +++++. .+||
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~----------~~~~~~l~~~~------~~~~~~~~~~~~~-~~aD 63 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRN----------AQIAARLAERF------PKVRIAKDNQAVV-DRSD 63 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCC----------HHHHHHHHHHc------CCceEeCCHHHHH-HhCC
Confidence 37999999999999999998887533 3455542 34443333321 112222 233443 4699
Q ss_pred eEeecccCCcccccccccc---cceEEEecCCCCCCHH-HHHHHHh--CCceEeccccc-cccCcee--hhHHHhhh---
Q 015287 284 VLVPCALGGVLNKENAADV---KAKFIIEAANHPTDPE-ADEILSK--KGVVILPDIYA-NSGGVTV--SYFEWVQN--- 351 (410)
Q Consensus 284 vliPaA~~~~I~~~na~~i---~akiIvEgAN~p~t~~-A~~iL~~--rGI~v~PD~la-NaGGVi~--s~~E~~qn--- 351 (410)
+++-|.-...+. +-+..+ +-++|+.-+ .+++.+ ..+.+.. +-+.++|-.-. ...|++. ...++++.
T Consensus 64 vVilav~p~~~~-~vl~~l~~~~~~~vis~~-ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~~~~~~~l~~ 141 (258)
T PRK06476 64 VVFLAVRPQIAE-EVLRALRFRPGQTVISVI-AATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPPDPFVAALFD 141 (258)
T ss_pred EEEEEeCHHHHH-HHHHHhccCCCCEEEEEC-CCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCCHHHHHHHHH
Confidence 999887643332 111112 234555544 455544 4444433 22345553222 2234432 11233332
Q ss_pred -cccCCC--CHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 015287 352 -IQGFMW--EEEKVNHE-----LKRYMMSAFKDIKTMCQTHNCNLRMGAFTLG 396 (410)
Q Consensus 352 -~~~~~w--~~~~v~~~-----l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A 396 (410)
+....| +++..+.- .-..+...+++..+.+++.|++..+|..++.
T Consensus 142 ~lG~~~~~~~e~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~ 194 (258)
T PRK06476 142 ALGTAVECDSEEEYDLLAAASALMATYFGILETATGWLEEQGLKRQKARAYLA 194 (258)
T ss_pred hcCCcEEECChHhccceeehhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 222222 12222111 1112234556666777888998887765544
No 116
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.92 E-value=0.16 Score=50.32 Aligned_cols=83 Identities=14% Similarity=0.177 Sum_probs=62.2
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN 260 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~ 260 (410)
.+.|..|++.. +++++.+++|++++|.|- ..||.-++.+|.++++.|. +++++. -|+.+
T Consensus 138 ~PcTp~av~~l----L~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt-~chs~T-------~~l~~-------- 197 (278)
T PRK14172 138 LPCTPNSVITL----IKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVT-ICHSKT-------KNLKE-------- 197 (278)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCCC-------CCHHH--------
Confidence 57899888665 456789999999999994 7899999999999999887 887642 01111
Q ss_pred CCcccCCCCeeecCCcccccccceEeeccc-CCccccccccc
Q 015287 261 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAAD 301 (410)
Q Consensus 261 g~v~~~~~~~~i~~~~ll~~~~DvliPaA~-~~~I~~~na~~ 301 (410)
+...+||+|-|+. .+.|+.+..+.
T Consensus 198 -----------------~~~~ADIvIsAvGkp~~i~~~~ik~ 222 (278)
T PRK14172 198 -----------------VCKKADILVVAIGRPKFIDEEYVKE 222 (278)
T ss_pred -----------------HHhhCCEEEEcCCCcCccCHHHcCC
Confidence 2346888888774 56777777664
No 117
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.88 E-value=0.073 Score=55.06 Aligned_cols=126 Identities=18% Similarity=0.209 Sum_probs=77.0
Q ss_pred CeEEEEccChHHHHHHHHHHHCC-CEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCC------cccc
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHG-GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLN------DLLV 279 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G-akvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~------~ll~ 279 (410)
++|.|.|.|+||+.+|+.|++.| .+|. |+|.+ .+.+.+.....+. .. .+..++-. ++++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~-iAdRs----------~~~~~~i~~~~~~--~v-~~~~vD~~d~~al~~li~ 67 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVT-IADRS----------KEKCARIAELIGG--KV-EALQVDAADVDALVALIK 67 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEE-EEeCC----------HHHHHHHHhhccc--cc-eeEEecccChHHHHHHHh
Confidence 58999999999999999999999 7877 88875 3455544443211 00 01112211 2333
Q ss_pred cccceEeecccCCcccccccc-cccce-EEEecCCCCC-CHHHHHHHHhCCceEeccccccccCceehhHHHh
Q 015287 280 HECDVLVPCALGGVLNKENAA-DVKAK-FIIEAANHPT-DPEADEILSKKGVVILPDIYANSGGVTVSYFEWV 349 (410)
Q Consensus 280 ~~~DvliPaA~~~~I~~~na~-~i~ak-iIvEgAN~p~-t~~A~~iL~~rGI~v~PD~laNaGGVi~s~~E~~ 349 (410)
+.|+.|-|+.+. ++..-++ -++++ -++.-+|..- .-+-++...+.||.++|+. --+-|++..+....
T Consensus 68 -~~d~VIn~~p~~-~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~-G~dPGi~nv~a~~a 137 (389)
T COG1748 68 -DFDLVINAAPPF-VDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGC-GFDPGITNVLAAYA 137 (389)
T ss_pred -cCCEEEEeCCch-hhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEccc-CcCcchHHHHHHHH
Confidence 449999887543 3332221 12332 3455666553 3556788999999999984 44557766655443
No 118
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.86 E-value=0.1 Score=51.85 Aligned_cols=53 Identities=28% Similarity=0.247 Sum_probs=45.4
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccC-hHHHHHHHHHHHCCCEEEEEECC
Q 015287 181 REAATGLGVFFATEALLAEHGKSISNMKFAIQGFG-NVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 181 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakvVaVsD~ 238 (410)
-.++|..|+... ++.++.+++|++|+|.|-| .||..+|.+|.++|+.|. ++++
T Consensus 136 ~~PcTp~avi~l----L~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVt-v~hs 189 (285)
T PRK14191 136 FVPATPMGVMRL----LKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVS-VCHI 189 (285)
T ss_pred CCCCcHHHHHHH----HHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEE-EEeC
Confidence 357999988665 4567899999999999988 999999999999999987 7765
No 119
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=94.85 E-value=0.066 Score=52.64 Aligned_cols=107 Identities=17% Similarity=0.153 Sum_probs=64.6
Q ss_pred CeEEEEccChHHHHHHHHHHHC---CCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeee-cCCccccccc
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEH---GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHEC 282 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~---GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~ 282 (410)
.||.|+|||++|+.+++.|... +.++++|.|++. +...+... . ...+ +.++++..++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~----------~~~~~~~~---~------~~~~~~l~~ll~~~~ 63 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAA----------DLPPALAG---R------VALLDGLPGLLAWRP 63 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCH----------HHHHHhhc---c------CcccCCHHHHhhcCC
Confidence 6899999999999999998643 378998888742 22221111 1 1122 3467788899
Q ss_pred ceEeecccCCcccccccccc--cceEEEecCCCCCCHHHHH----HHHhCC-ceEec
Q 015287 283 DVLVPCALGGVLNKENAADV--KAKFIIEAANHPTDPEADE----ILSKKG-VVILP 332 (410)
Q Consensus 283 DvliPaA~~~~I~~~na~~i--~akiIvEgAN~p~t~~A~~----iL~~rG-I~v~P 332 (410)
|++++||....+.+--..-+ .+.+|+-.--.-.+++-.+ ..++.| -+++|
T Consensus 64 DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ip 120 (267)
T PRK13301 64 DLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVP 120 (267)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEe
Confidence 99999998777654433333 3455554322223333333 333334 45666
No 120
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=94.83 E-value=0.37 Score=48.89 Aligned_cols=32 Identities=28% Similarity=0.568 Sum_probs=28.0
Q ss_pred CeEEEEccChHHHHHHHHHHH-CCCEEEEEECC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDI 238 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~ 238 (410)
.||+|-|||.+|+.+.|.+.+ ....||||-|.
T Consensus 3 ~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~ 35 (331)
T PRK15425 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL 35 (331)
T ss_pred eEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC
Confidence 489999999999999999764 46899999874
No 121
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.82 E-value=0.094 Score=48.67 Aligned_cols=120 Identities=26% Similarity=0.361 Sum_probs=57.2
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCCC---------ce-eCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCc
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG---------AI-KNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLND 276 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G---------~i-~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ 276 (410)
++|+|.|.|-||..+|-.|++.|.+|++ .|.+- .. +.+.| ++++++...+.+.+.- .++.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g-~D~~~~~v~~l~~g~~p~~E~~--l~~ll~~~~~~~~l~~------t~~~~ 71 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIG-VDIDEEKVEALNNGELPIYEPG--LDELLKENVSAGRLRA------TTDIE 71 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEE-E-S-HHHHHHHHTTSSSS-CTT--HHHHHHHHHHTTSEEE------ESEHH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEE-EeCChHHHHHHhhccccccccc--hhhhhccccccccchh------hhhhh
Confidence 5899999999999999999999999995 46542 11 12222 2344433332222211 11111
Q ss_pred ccccccceEeecccCCccccccccc----------c------cceEEEecCCCC-CCH-HHHHHHHhCC-------ceEe
Q 015287 277 LLVHECDVLVPCALGGVLNKENAAD----------V------KAKFIIEAANHP-TDP-EADEILSKKG-------VVIL 331 (410)
Q Consensus 277 ll~~~~DvliPaA~~~~I~~~na~~----------i------~akiIvEgAN~p-~t~-~A~~iL~~rG-------I~v~ 331 (410)
-.-.++|+++-|- +.-.++++... | .+-+|.|..=.| +|. -...+|++.+ +.+.
T Consensus 72 ~ai~~adv~~I~V-pTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~ 150 (185)
T PF03721_consen 72 EAIKDADVVFICV-PTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYS 150 (185)
T ss_dssp HHHHH-SEEEE-----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE-
T ss_pred hhhhccceEEEec-CCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEEC
Confidence 1124788888774 22222222111 1 344566665555 344 3557888765 6788
Q ss_pred ccccc
Q 015287 332 PDIYA 336 (410)
Q Consensus 332 PD~la 336 (410)
|+++.
T Consensus 151 PErl~ 155 (185)
T PF03721_consen 151 PERLR 155 (185)
T ss_dssp -----
T ss_pred CCccC
Confidence 98876
No 122
>PRK08223 hypothetical protein; Validated
Probab=94.77 E-value=0.026 Score=56.12 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=32.3
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
|+..+|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 788999999999999999999999998766688864
No 123
>PRK08328 hypothetical protein; Provisional
Probab=94.76 E-value=0.027 Score=54.00 Aligned_cols=119 Identities=19% Similarity=0.230 Sum_probs=66.1
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHH-hCCCcccCCCCeeecCCccccccc
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKK-SNKSLNDFQGGNAMDLNDLLVHEC 282 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~-~~g~v~~~~~~~~i~~~~ll~~~~ 282 (410)
+++.+|.|.|.|.+|+.+++.|...|..=+.+.|.+ =++...|-+..- ....+...+.+ ......+.....
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D-------~ve~sNL~Rq~l~~~~dvG~~~k~-~~a~~~l~~~np 96 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ-------TPELSNLNRQILHWEEDLGKNPKP-LSAKWKLERFNS 96 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC-------ccChhhhccccccChhhcCchHHH-HHHHHHHHHhCC
Confidence 677899999999999999999999998655577753 222222221100 00000000000 000112233344
Q ss_pred ceEeecccCCcccccccccc--cceEEEecCCCCCCH-HHHHHHHhCCceEe
Q 015287 283 DVLVPCALGGVLNKENAADV--KAKFIIEAANHPTDP-EADEILSKKGVVIL 331 (410)
Q Consensus 283 DvliPaA~~~~I~~~na~~i--~akiIvEgAN~p~t~-~A~~iL~~rGI~v~ 331 (410)
|+-|-+- ...++++|+..+ ++.+|+++.-++.+. ...+...++||.++
T Consensus 97 ~v~v~~~-~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i 147 (231)
T PRK08328 97 DIKIETF-VGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLV 147 (231)
T ss_pred CCEEEEE-eccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 5555552 234666776543 577888876555332 23456778888765
No 124
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.74 E-value=0.47 Score=51.14 Aligned_cols=132 Identities=18% Similarity=0.234 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHHHHHH------hCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHH
Q 015287 184 ATGLGVFFATEALLAE------HGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYK 257 (410)
Q Consensus 184 aTg~Gv~~~~~~~~~~------~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~ 257 (410)
--++|+..+++..+.. .+.+++++++.|.|.|.+|+.++..|.+.|++|+ +.+.+ .+...+..
T Consensus 351 TD~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~-i~nR~----------~e~a~~la 419 (529)
T PLN02520 351 TDYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVV-IANRT----------YERAKELA 419 (529)
T ss_pred ccHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEcCC----------HHHHHHHH
Confidence 3468888888764422 2456889999999999999999999999999877 77663 23333333
Q ss_pred HhCC-CcccCCCCeeecCCcccccccceEeecccCCcc---ccc--ccccc-cceEEEecCCCCCCHHHHHHHHhCCceE
Q 015287 258 KSNK-SLNDFQGGNAMDLNDLLVHECDVLVPCALGGVL---NKE--NAADV-KAKFIIEAANHPTDPEADEILSKKGVVI 330 (410)
Q Consensus 258 ~~~g-~v~~~~~~~~i~~~~ll~~~~DvliPaA~~~~I---~~~--na~~i-~akiIvEgAN~p~t~~A~~iL~~rGI~v 330 (410)
++-+ ....+. +..+.+..++||+|-|..-+.- +.. ....+ ...+|.+-.-+|....--+.-+++|..+
T Consensus 420 ~~l~~~~~~~~-----~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~ 494 (529)
T PLN02520 420 DAVGGQALTLA-----DLENFHPEEGMILANTTSVGMQPNVDETPISKHALKHYSLVFDAVYTPKITRLLREAEESGAII 494 (529)
T ss_pred HHhCCceeeHh-----HhhhhccccCeEEEecccCCCCCCCCCCcccHhhCCCCCEEEEeccCCCcCHHHHHHHHCCCeE
Confidence 2211 111110 0112233467899866632221 111 01112 3457888888885333334455666654
Q ss_pred e
Q 015287 331 L 331 (410)
Q Consensus 331 ~ 331 (410)
+
T Consensus 495 ~ 495 (529)
T PLN02520 495 V 495 (529)
T ss_pred e
Confidence 3
No 125
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=94.72 E-value=0.69 Score=47.89 Aligned_cols=178 Identities=13% Similarity=0.199 Sum_probs=92.9
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCc-----ccC---CCCee-ecCC-c
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL-----NDF---QGGNA-MDLN-D 276 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v-----~~~---~~~~~-i~~~-~ 276 (410)
++|+|.|.|.||..+|..|+ .|..|+ +.|.+ .+.+.+..+..-.+ ..+ ..... .+.+ +
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~Vi-gvD~d----------~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~ 68 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVV-ALDIL----------PSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKN 68 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEE-EEECC----------HHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchh
Confidence 47999999999999998777 499988 55654 22222221100000 000 00111 1111 1
Q ss_pred ccccccceEeecccCCccccc-------cc-------ccc--cceEEEecCCCC-CCHHHHHHHHhCCceEecccccccc
Q 015287 277 LLVHECDVLVPCALGGVLNKE-------NA-------ADV--KAKFIIEAANHP-TDPEADEILSKKGVVILPDIYANSG 339 (410)
Q Consensus 277 ll~~~~DvliPaA~~~~I~~~-------na-------~~i--~akiIvEgAN~p-~t~~A~~iL~~rGI~v~PD~laNaG 339 (410)
-.-.+||++|.|--.. ++.+ .+ .++ ..-+|.+..=.| +|.+..+.+.++|+.+-|.++...=
T Consensus 69 ~~~~~ad~vii~Vpt~-~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~~PE~l~~G~ 147 (388)
T PRK15057 69 EAYRDADYVIIATPTD-YDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENIIFSPEFLREGK 147 (388)
T ss_pred hhhcCCCEEEEeCCCC-CccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcEEECcccccCCc
Confidence 1235899999885433 2211 11 111 233555666555 5667777888899999999886543
Q ss_pred C--------ce-eh--------hHHHhhh--cc-cC-----CCCHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHH
Q 015287 340 G--------VT-VS--------YFEWVQN--IQ-GF-----MWEEEKVNHELKR----YMMSAFKDIKTMCQTHNCNLRM 390 (410)
Q Consensus 340 G--------Vi-~s--------~~E~~qn--~~-~~-----~w~~~~v~~~l~~----~m~~~~~~v~~~a~~~~~~~r~ 390 (410)
- .+ +. ..+.+.. .. .. .+...|.-+-.++ ......+++...|++.|++..+
T Consensus 148 a~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~e 227 (388)
T PRK15057 148 ALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQ 227 (388)
T ss_pred ccccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHH
Confidence 3 11 11 1111111 00 00 1111222222222 2234567788888999999888
Q ss_pred HHHHHHH
Q 015287 391 GAFTLGV 397 (410)
Q Consensus 391 aA~~~A~ 397 (410)
....++.
T Consensus 228 V~~a~~~ 234 (388)
T PRK15057 228 IIEGVCL 234 (388)
T ss_pred HHHHhcC
Confidence 7766543
No 126
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.72 E-value=0.11 Score=50.51 Aligned_cols=168 Identities=21% Similarity=0.315 Sum_probs=99.7
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCccc---cc--c
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL---VH--E 281 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll---~~--~ 281 (410)
+++.++|+|.+|.++++.|.+.|..|| +-|. |.+++.+.+... ... + .+.++++ .. -
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV-~yD~----------n~~av~~~~~~g--a~~---a--~sl~el~~~L~~pr~ 62 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVV-GYDV----------NQTAVEELKDEG--ATG---A--ASLDELVAKLSAPRI 62 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEE-EEcC----------CHHHHHHHHhcC--Ccc---c--cCHHHHHHhcCCCcE
Confidence 357789999999999999999999999 4554 345555555432 111 0 0112221 11 1
Q ss_pred cceEeecc-cCCcccccccccccc-eEEEecCCCCCC--HHHHHHHHhCCceEeccccccccCceeh----------hHH
Q 015287 282 CDVLVPCA-LGGVLNKENAADVKA-KFIIEAANHPTD--PEADEILSKKGVVILPDIYANSGGVTVS----------YFE 347 (410)
Q Consensus 282 ~DvliPaA-~~~~I~~~na~~i~a-kiIvEgAN~p~t--~~A~~iL~~rGI~v~PD~laNaGGVi~s----------~~E 347 (410)
+=+.+|++ +-+.+-++-++.+.+ .+|++|.|.-.. .+-.+.|.++||.++- .--|||+--. --|
T Consensus 63 vWlMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD--~GTSGG~~G~~~G~~lMiGG~~~ 140 (300)
T COG1023 63 VWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLD--VGTSGGVWGAERGYCLMIGGDEE 140 (300)
T ss_pred EEEEccCCCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEe--ccCCCCchhhhcCceEEecCcHH
Confidence 23567886 323232333444444 699999999863 4444689999999873 4567777321 011
Q ss_pred Hhhhcc-----------cCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHH
Q 015287 348 WVQNIQ-----------GFMW--------EEEKVNHELKRYMMSAFKDIKTMCQT--HNCNLRMGAFT 394 (410)
Q Consensus 348 ~~qn~~-----------~~~w--------~~~~v~~~l~~~m~~~~~~v~~~a~~--~~~~~r~aA~~ 394 (410)
-++.+. ++-. =-.-|+..+|.-|-+++.+=++.-++ ++.++...|-+
T Consensus 141 a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~v 208 (300)
T COG1023 141 AVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEV 208 (300)
T ss_pred HHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 111110 1000 01346777888888888887777765 45677776654
No 127
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.70 E-value=0.1 Score=51.90 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=45.0
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
.++|..||... +++++.+++|++|+|.|- |.||.-+|.+|.++|+.|+ ++.+
T Consensus 138 ~PcTp~avi~l----L~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVt-v~~s 190 (284)
T PRK14179 138 IPCTPAGIMEM----FREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVT-LTHS 190 (284)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEE-EECC
Confidence 57999998655 456789999999999998 9999999999999999987 6644
No 128
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=94.69 E-value=0.4 Score=48.60 Aligned_cols=31 Identities=35% Similarity=0.624 Sum_probs=27.2
Q ss_pred eEEEEccChHHHHHHHHHHHC---CCEEEEEECC
Q 015287 208 KFAIQGFGNVGSWAAKFFHEH---GGKVVAVSDI 238 (410)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~---GakvVaVsD~ 238 (410)
||+|-|||-+|+.+.+.+.+. ..+||+|-|.
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~ 34 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL 34 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC
Confidence 689999999999999998765 5899999874
No 129
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.67 E-value=0.51 Score=46.62 Aligned_cols=130 Identities=15% Similarity=0.094 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHHHHhCC--CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCC
Q 015287 185 TGLGVFFATEALLAEHGK--SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKS 262 (410)
Q Consensus 185 Tg~Gv~~~~~~~~~~~g~--~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~ 262 (410)
-+.|...+++ +.+. ++++++|.|.|.|.+++.++..|.+.|++-|.|.+.+ .+...+..++-+.
T Consensus 106 D~~G~~~~l~----~~~~~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt----------~~ka~~La~~~~~ 171 (282)
T TIGR01809 106 DWDGIAGALA----NIGKFEPLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN----------PDKLSRLVDLGVQ 171 (282)
T ss_pred CHHHHHHHHH----hhCCccccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC----------HHHHHHHHHHhhh
Confidence 3567777765 3342 4789999999999999999999999998655587764 2333333222110
Q ss_pred cccCCCCeeecC-Cccc--ccccceEeeccc-CCcccccccc---------cc-cceEEEecCCCCCCHHHHHHHHhCCc
Q 015287 263 LNDFQGGNAMDL-NDLL--VHECDVLVPCAL-GGVLNKENAA---------DV-KAKFIIEAANHPTDPEADEILSKKGV 328 (410)
Q Consensus 263 v~~~~~~~~i~~-~~ll--~~~~DvliPaA~-~~~I~~~na~---------~i-~akiIvEgAN~p~t~~A~~iL~~rGI 328 (410)
.. ....++. +++. -.++|++|=|.- +..++.+... ++ +..+|.+..-+|....--+.-+++|.
T Consensus 172 ~~---~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~T~ll~~A~~~G~ 248 (282)
T TIGR01809 172 VG---VITRLEGDSGGLAIEKAAEVLVSTVPADVPADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWPTPLVAIVSAAGW 248 (282)
T ss_pred cC---cceeccchhhhhhcccCCCEEEECCCCCCCCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCCCHHHHHHHHCCC
Confidence 00 0011111 2221 146899998763 3334333221 11 23578888878853333445566776
Q ss_pred eEe
Q 015287 329 VIL 331 (410)
Q Consensus 329 ~v~ 331 (410)
.++
T Consensus 249 ~~~ 251 (282)
T TIGR01809 249 RVI 251 (282)
T ss_pred EEE
Confidence 654
No 130
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=94.66 E-value=0.17 Score=49.66 Aligned_cols=169 Identities=18% Similarity=0.225 Sum_probs=90.7
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeee-cCCcccccccceE
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECDVL 285 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~Dvl 285 (410)
++|.|.|+|.+|+.+|+.|.+.|.+|+ +.|.+ .+.+.+..+. + .... +.++++ .+||++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~-~~d~~----------~~~~~~~~~~-g-------~~~~~~~~e~~-~~~d~v 62 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLV-VYDRN----------PEAVAEVIAA-G-------AETASTAKAVA-EQCDVI 62 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEE-EEcCC----------HHHHHHHHHC-C-------CeecCCHHHHH-hcCCEE
Confidence 579999999999999999999999987 55553 2223222221 1 1111 223443 479999
Q ss_pred eecccCCccccc-------ccccc-cceEEEecCCCCC--CHHHHHHHHhCCceEeccccc------cccC--cee----
Q 015287 286 VPCALGGVLNKE-------NAADV-KAKFIIEAANHPT--DPEADEILSKKGVVILPDIYA------NSGG--VTV---- 343 (410)
Q Consensus 286 iPaA~~~~I~~~-------na~~i-~akiIvEgAN~p~--t~~A~~iL~~rGI~v~PD~la------NaGG--Vi~---- 343 (410)
|-|.-...-... ..+.+ +-++|++..+... +.+..+.+.++|+.++..-+. ..|- +++
T Consensus 63 i~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~ 142 (296)
T PRK11559 63 ITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDK 142 (296)
T ss_pred EEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCH
Confidence 988643221111 12223 2367887766542 335566788889876432211 1111 111
Q ss_pred hhHHHhhh----ccc----C-CCCHHH----HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 015287 344 SYFEWVQN----IQG----F-MWEEEK----VNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTL 395 (410)
Q Consensus 344 s~~E~~qn----~~~----~-~w~~~~----v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~ 395 (410)
..++.++. +.. . ....-+ ++.-+...+...+.+.+..+++.|+++.+..-.+
T Consensus 143 ~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l 207 (296)
T PRK11559 143 AIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAI 207 (296)
T ss_pred HHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 12333322 110 0 011112 2222333333457888889999999887655444
No 131
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.64 E-value=0.16 Score=50.67 Aligned_cols=83 Identities=16% Similarity=0.150 Sum_probs=61.7
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN 260 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~ 260 (410)
.++|..|+.. ++++.+.+++|++++|.|= ..||.-++.+|.++++.|. +++++. + |+.
T Consensus 140 ~PcTp~avi~----lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt-~chs~T----~---~l~--------- 198 (294)
T PRK14187 140 IPCTPKGCLY----LIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVT-TVHSAT----R---DLA--------- 198 (294)
T ss_pred cCcCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEE-EeCCCC----C---CHH---------
Confidence 4689998864 4566789999999999995 7799999999999999998 777742 0 111
Q ss_pred CCcccCCCCeeecCCcccccccceEeeccc-CCccccccccc
Q 015287 261 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAAD 301 (410)
Q Consensus 261 g~v~~~~~~~~i~~~~ll~~~~DvliPaA~-~~~I~~~na~~ 301 (410)
-+...+||+|-|.. .+.|+.+....
T Consensus 199 ----------------~~~~~ADIvVsAvGkp~~i~~~~ik~ 224 (294)
T PRK14187 199 ----------------DYCSKADILVAAVGIPNFVKYSWIKK 224 (294)
T ss_pred ----------------HHHhhCCEEEEccCCcCccCHHHcCC
Confidence 12347788887774 56677666664
No 132
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.61 E-value=0.094 Score=49.20 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=32.0
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 203 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
.|+..+|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 3788999999999999999999999998544488865
No 133
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=94.61 E-value=0.4 Score=48.79 Aligned_cols=34 Identities=29% Similarity=0.507 Sum_probs=29.7
Q ss_pred CeEEEEccChHHHHHHHHHHH-CCCEEEEEECCCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDITG 240 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~~G 240 (410)
.||+|.|||.+|+..++.+.+ .+.++|+|.|...
T Consensus 6 lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~ 40 (338)
T PLN02358 6 IRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFI 40 (338)
T ss_pred eEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCC
Confidence 699999999999999998875 4799999999653
No 134
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.59 E-value=0.13 Score=51.43 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=45.1
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEEECC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
.++|..|++..+ +..+.+++|++|+|.| .|.||..+|.+|.+.|+.|+ ++++
T Consensus 138 ~PcTp~ai~~ll----~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVt-v~~~ 190 (296)
T PRK14188 138 VPCTPLGCMMLL----RRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVT-IAHS 190 (296)
T ss_pred cCCCHHHHHHHH----HHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEE-EECC
Confidence 579998887654 4568899999999999 99999999999999999998 6654
No 135
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=94.58 E-value=0.23 Score=49.75 Aligned_cols=54 Identities=19% Similarity=0.114 Sum_probs=45.5
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 181 REAATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 181 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
-.++|..|+...+ ++.+.+++|++|+|.|= ..||+-++.+|.++++.|. ++.++
T Consensus 146 ~~PcTp~avi~lL----~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVt-vchs~ 200 (299)
T PLN02516 146 FLPCTPKGCLELL----SRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVT-VVHSR 200 (299)
T ss_pred CCCCCHHHHHHHH----HHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCC
Confidence 3579999976554 46789999999999995 6799999999999999987 88764
No 136
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.58 E-value=0.29 Score=50.62 Aligned_cols=118 Identities=28% Similarity=0.380 Sum_probs=72.0
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCC---------CceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcc
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT---------GAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDL 277 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~---------G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~l 277 (410)
.|++|.|+|-||.-+|-.++++|++|+|+ |.+ |..|=.+ .+.+++++...+.|.+. ..+.-+.
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~-DIn~~~Vd~ln~G~~~i~e-~~~~~~v~~~v~~g~lr------aTtd~~~ 81 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGV-DINQKKVDKLNRGESYIEE-PDLDEVVKEAVESGKLR------ATTDPEE 81 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeE-eCCHHHHHHHhCCcceeec-CcHHHHHHHHHhcCCce------EecChhh
Confidence 89999999999999999999999999986 643 3333211 23445443333333332 1122233
Q ss_pred cccccceEeecccCCccccc---------c-cccc------cceEEEecCCCC-CCHHHHH-HHHhCCceEec-cc
Q 015287 278 LVHECDVLVPCALGGVLNKE---------N-AADV------KAKFIIEAANHP-TDPEADE-ILSKKGVVILP-DI 334 (410)
Q Consensus 278 l~~~~DvliPaA~~~~I~~~---------n-a~~i------~akiIvEgAN~p-~t~~A~~-iL~~rGI~v~P-D~ 334 (410)
++ +||++|-|- +.-++.. | ++.| ..-+|.|..--| +|.+.-. +|++++-+.+| ||
T Consensus 82 l~-~~dv~iI~V-PTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df 155 (436)
T COG0677 82 LK-ECDVFIICV-PTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDF 155 (436)
T ss_pred cc-cCCEEEEEe-cCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCccccee
Confidence 44 999998773 3333332 1 1111 456899999888 6777665 55554544443 44
No 137
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=94.51 E-value=0.67 Score=41.60 Aligned_cols=32 Identities=34% Similarity=0.622 Sum_probs=27.9
Q ss_pred CeEEEEccChHHHHHHHHHHH-CCCEEEEEECC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDI 238 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~ 238 (410)
.+|+|.|||.+|+.+++.+.+ .+.+++++.|.
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~ 33 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL 33 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 479999999999999998874 67899999884
No 138
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.48 E-value=0.19 Score=49.88 Aligned_cols=83 Identities=22% Similarity=0.248 Sum_probs=62.4
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN 260 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~ 260 (410)
.++|..||+..+ ++++.+++|++|+|.|= ..||+-++.+|.++++.|. ++.++- + |++
T Consensus 137 ~PcTp~avi~lL----~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt-~chs~T----~---nl~--------- 195 (282)
T PRK14166 137 LPCTPLGVMKLL----KAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVS-VCHIKT----K---DLS--------- 195 (282)
T ss_pred cCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC----C---CHH---------
Confidence 478999887655 45789999999999995 7799999999999999997 777641 0 110
Q ss_pred CCcccCCCCeeecCCcccccccceEeeccc-CCccccccccc
Q 015287 261 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAAD 301 (410)
Q Consensus 261 g~v~~~~~~~~i~~~~ll~~~~DvliPaA~-~~~I~~~na~~ 301 (410)
-....+||+|-|+. .+.|+.+..+.
T Consensus 196 ----------------~~~~~ADIvIsAvGkp~~i~~~~vk~ 221 (282)
T PRK14166 196 ----------------LYTRQADLIIVAAGCVNLLRSDMVKE 221 (282)
T ss_pred ----------------HHHhhCCEEEEcCCCcCccCHHHcCC
Confidence 12357889988875 56777776664
No 139
>PRK07680 late competence protein ComER; Validated
Probab=94.44 E-value=0.11 Score=50.60 Aligned_cols=111 Identities=15% Similarity=0.312 Sum_probs=65.6
Q ss_pred CeEEEEccChHHHHHHHHHHHCCC---EEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeee-cCCccccccc
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGG---KVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHEC 282 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~Ga---kvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~ 282 (410)
++|.|+|.|++|+.+++.|.+.|. .-|.+.|.+ .+.+....++ +++.... ++.+++ .++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~----------~~~~~~~~~~------~~g~~~~~~~~~~~-~~a 63 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRT----------PAKAYHIKER------YPGIHVAKTIEEVI-SQS 63 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCC----------HHHHHHHHHH------cCCeEEECCHHHHH-HhC
Confidence 369999999999999999998884 234466653 2333332222 1222222 223333 479
Q ss_pred ceEeecccCCcccc---cccccc-cceEEEecCCCCCCHHHHHHHHhCCceEeccc
Q 015287 283 DVLVPCALGGVLNK---ENAADV-KAKFIIEAANHPTDPEADEILSKKGVVILPDI 334 (410)
Q Consensus 283 DvliPaA~~~~I~~---~na~~i-~akiIvEgAN~p~t~~A~~iL~~rGI~v~PD~ 334 (410)
|++|-|.-...+.+ +..+.+ +-++|+.-+|+-...+.++.+..+.+.++|..
T Consensus 64 DiVilav~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~~~~~r~~p~~ 119 (273)
T PRK07680 64 DLIFICVKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVPCQVARIIPSI 119 (273)
T ss_pred CEEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCEEEECCCh
Confidence 99999874433211 122223 24688888876544455566665667788853
No 140
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.41 E-value=0.17 Score=52.06 Aligned_cols=35 Identities=34% Similarity=0.406 Sum_probs=30.8
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
+.+.+|+|.|+|.+|+.+++.|...|++|+ +.|.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~-v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVT-ILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEE-EEECC
Confidence 567889999999999999999999999866 66763
No 141
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=94.32 E-value=0.45 Score=49.38 Aligned_cols=32 Identities=38% Similarity=0.614 Sum_probs=28.1
Q ss_pred CeEEEEccChHHHHHHHHHHHC---CCEEEEEECC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEH---GGKVVAVSDI 238 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~---GakvVaVsD~ 238 (410)
.+|+|.|||.+|+.+.+.|.+. ..+||+|-|.
T Consensus 61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~ 95 (395)
T PLN03096 61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT 95 (395)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC
Confidence 5899999999999999999876 4689999775
No 142
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.23 E-value=0.39 Score=52.50 Aligned_cols=136 Identities=13% Similarity=0.173 Sum_probs=81.0
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCccc----cccc
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL----VHEC 282 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll----~~~~ 282 (410)
.+|+|.|||.+|+.+++.|.++|..++ +-|. |.+.+.+.++. +.-.-|-+ .+..++| -.++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vv-vID~----------d~~~v~~~~~~-g~~v~~GD---at~~~~L~~agi~~A 465 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRIT-VLER----------DISAVNLMRKY-GYKVYYGD---ATQLELLRAAGAEKA 465 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEE-EEEC----------CHHHHHHHHhC-CCeEEEee---CCCHHHHHhcCCccC
Confidence 589999999999999999999999998 6676 34555544432 21111111 1223333 2378
Q ss_pred ceEeecccCCcccc---cccccc--cceEEEecCCCCCCHHHHHHHHhCCce-EeccccccccCceehhHHHhhh-cccC
Q 015287 283 DVLVPCALGGVLNK---ENAADV--KAKFIIEAANHPTDPEADEILSKKGVV-ILPDIYANSGGVTVSYFEWVQN-IQGF 355 (410)
Q Consensus 283 DvliPaA~~~~I~~---~na~~i--~akiIvEgAN~p~t~~A~~iL~~rGI~-v~PD~laNaGGVi~s~~E~~qn-~~~~ 355 (410)
|.+|-|.-....|. ..+++. +.++|+-+- +++..+.|++.|+- ++|+-+-.+ .+.-+. +...
T Consensus 466 ~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~----~~~~~~~L~~~Ga~~vv~e~~es~-------l~l~~~~L~~l 534 (601)
T PRK03659 466 EAIVITCNEPEDTMKIVELCQQHFPHLHILARAR----GRVEAHELLQAGVTQFSRETFSSA-------LELGRKTLVSL 534 (601)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeC----CHHHHHHHHhCCCCEEEccHHHHH-------HHHHHHHHHHc
Confidence 88877754333222 223332 567888554 46777899999995 446644332 232211 2234
Q ss_pred CCCHHHHHHHHHH
Q 015287 356 MWEEEKVNHELKR 368 (410)
Q Consensus 356 ~w~~~~v~~~l~~ 368 (410)
..+.+++.+.+++
T Consensus 535 g~~~~~~~~~~~~ 547 (601)
T PRK03659 535 GMHPHQAQRAQQH 547 (601)
T ss_pred CCCHHHHHHHHHH
Confidence 4566777666655
No 143
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=94.14 E-value=0.15 Score=48.39 Aligned_cols=88 Identities=26% Similarity=0.234 Sum_probs=54.5
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCccc--ccccce
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL--VHECDV 284 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll--~~~~Dv 284 (410)
++++|.|.||+|+.+++.|...|..|+ |+.+++ .+++....+..+.. +...+.. ...|||
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~-igs~r~---------~~~~~a~a~~l~~~--------i~~~~~~dA~~~aDV 63 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVI-IGSSRG---------PKALAAAAAALGPL--------ITGGSNEDAAALADV 63 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEE-EecCCC---------hhHHHHHHHhhccc--------cccCChHHHHhcCCE
Confidence 578999999999999999999999998 776653 23333333221111 2222222 235888
Q ss_pred EeecccCCcccccccc----cccceEEEecCCC
Q 015287 285 LVPCALGGVLNKENAA----DVKAKFIIEAANH 313 (410)
Q Consensus 285 liPaA~~~~I~~~na~----~i~akiIvEgAN~ 313 (410)
.+.+- +-.=..+.+. .++=|+|+...|.
T Consensus 64 VvLAV-P~~a~~~v~~~l~~~~~~KIvID~tnp 95 (211)
T COG2085 64 VVLAV-PFEAIPDVLAELRDALGGKIVIDATNP 95 (211)
T ss_pred EEEec-cHHHHHhHHHHHHHHhCCeEEEecCCC
Confidence 88774 2222222223 3446999999884
No 144
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.11 E-value=0.14 Score=49.49 Aligned_cols=36 Identities=19% Similarity=0.410 Sum_probs=31.6
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
|++.+|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 678999999999999999999999997666677764
No 145
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=94.11 E-value=0.21 Score=48.96 Aligned_cols=98 Identities=20% Similarity=0.208 Sum_probs=58.4
Q ss_pred CeEEEEc-cChHHHHHHHHHHH-CCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeec-CCcccccccc
Q 015287 207 MKFAIQG-FGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMD-LNDLLVHECD 283 (410)
Q Consensus 207 ~~vaIqG-fGnVG~~~a~~L~~-~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~-~~~ll~~~~D 283 (410)
.+|+|.| +|.+|+.+++.+.+ .+.++|++.|....-. .|-|..++... ..+ +....+ .+++ ..++|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~--~~~~~~~~~~~-------~~~-gv~~~~d~~~l-~~~~D 70 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSL--QGTDAGELAGI-------GKV-GVPVTDDLEAV-ETDPD 70 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc--cCCCHHHhcCc-------CcC-CceeeCCHHHh-cCCCC
Confidence 4899999 79999999999875 6899999999532111 13343333211 001 111112 2334 45799
Q ss_pred eEeecccCCccccccccc---ccceEEEecCCCCCCHH
Q 015287 284 VLVPCALGGVLNKENAAD---VKAKFIIEAANHPTDPE 318 (410)
Q Consensus 284 vliPaA~~~~I~~~na~~---i~akiIvEgAN~p~t~~ 318 (410)
++|.|+.. ..+.+++.. -+..+|+|=. ..|++
T Consensus 71 vVIdfT~p-~~~~~~~~~al~~g~~vVigtt--g~~~e 105 (266)
T TIGR00036 71 VLIDFTTP-EGVLNHLKFALEHGVRLVVGTT--GFSEE 105 (266)
T ss_pred EEEECCCh-HHHHHHHHHHHHCCCCEEEECC--CCCHH
Confidence 99999844 333444433 2567888765 35553
No 146
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.03 E-value=0.3 Score=49.97 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=62.0
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHh
Q 015287 181 REAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKS 259 (410)
Q Consensus 181 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~ 259 (410)
-.+.|..|+.. ++++.+.+++|++|+|+| ..-||.-++.+|.++++.|. ++.++- + |++
T Consensus 210 f~PCTp~avie----lL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVT-icHs~T----~---nl~-------- 269 (364)
T PLN02616 210 FVPCTPKGCIE----LLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVS-IVHSRT----K---NPE-------- 269 (364)
T ss_pred CCCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEE-EeCCCC----C---CHH--------
Confidence 45799999764 556679999999999999 47799999999999999987 776531 0 111
Q ss_pred CCCcccCCCCeeecCCcccccccceEeeccc-CCccccccccc
Q 015287 260 NKSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAAD 301 (410)
Q Consensus 260 ~g~v~~~~~~~~i~~~~ll~~~~DvliPaA~-~~~I~~~na~~ 301 (410)
+ +...+||+|-|.. .+.|+.+.++.
T Consensus 270 ----------------~-~~r~ADIVIsAvGkp~~i~~d~vK~ 295 (364)
T PLN02616 270 ----------------E-ITREADIIISAVGQPNMVRGSWIKP 295 (364)
T ss_pred ----------------H-HHhhCCEEEEcCCCcCcCCHHHcCC
Confidence 1 1347888888774 56677666654
No 147
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.03 E-value=0.13 Score=49.14 Aligned_cols=112 Identities=27% Similarity=0.366 Sum_probs=62.9
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCccc---ccccc
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL---VHECD 283 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll---~~~~D 283 (410)
++++|.|.|.||+.+|+.|.+.|..|+.| |.+ .+.+.++....-....+-+ ...+++.|. -.++|
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~I-d~d----------~~~~~~~~~~~~~~~~v~g-d~t~~~~L~~agi~~aD 68 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLI-DRD----------EERVEEFLADELDTHVVIG-DATDEDVLEEAGIDDAD 68 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEE-EcC----------HHHHHHHhhhhcceEEEEe-cCCCHHHHHhcCCCcCC
Confidence 58999999999999999999999999954 542 3344432221111100000 011112222 24799
Q ss_pred eEeecccCCcccc---ccccc-ccce-EEEecCCCCCCHHHHHHHHhCCc--eEeccc
Q 015287 284 VLVPCALGGVLNK---ENAAD-VKAK-FIIEAANHPTDPEADEILSKKGV--VILPDI 334 (410)
Q Consensus 284 vliPaA~~~~I~~---~na~~-i~ak-iIvEgAN~p~t~~A~~iL~~rGI--~v~PD~ 334 (410)
+++=+...+..|. ..+.+ +..+ +|+-. .+++-.++|.+-|+ .+.|..
T Consensus 69 ~vva~t~~d~~N~i~~~la~~~~gv~~viar~----~~~~~~~~~~~~g~~~ii~Pe~ 122 (225)
T COG0569 69 AVVAATGNDEVNSVLALLALKEFGVPRVIARA----RNPEHEKVLEKLGADVIISPEK 122 (225)
T ss_pred EEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEe----cCHHHHHHHHHcCCcEEECHHH
Confidence 9998876655442 22222 3333 22222 35667788888883 344543
No 148
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.01 E-value=0.16 Score=49.23 Aligned_cols=37 Identities=16% Similarity=0.427 Sum_probs=32.1
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 203 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
.|+.++|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 3788999999999999999999999998655588865
No 149
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.99 E-value=0.071 Score=44.52 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=30.8
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECC
Q 015287 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
.+++|++|.|.|.|+||..-++.|.+.|++|+-+|..
T Consensus 3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 3689999999999999999999999999999866654
No 150
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=93.96 E-value=0.09 Score=53.19 Aligned_cols=105 Identities=20% Similarity=0.349 Sum_probs=67.0
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccccc
Q 015287 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE 281 (410)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~ 281 (410)
..+.|++|.|.|+|++|+.+|+.|...|.+|++. |.+. +..... + .+ ..+.++++ .+
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~-d~~~----------~~~~~~------~-~~----~~~l~ell-~~ 198 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAY-DAYP----------NKDLDF------L-TY----KDSVKEAI-KD 198 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-eCCh----------hHhhhh------h-hc----cCCHHHHH-hc
Confidence 3589999999999999999999999999999854 5431 110000 0 01 01123333 47
Q ss_pred cceEeecccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q 015287 282 CDVLVPCALG-----GVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV 329 (410)
Q Consensus 282 ~DvliPaA~~-----~~I~~~na~~i~-akiIvEgAN~p~-t~~A-~~iL~~rGI~ 329 (410)
||+++-|.-. +.|+++....++ -.+++..+-+++ ..+| .+.|.+.-|.
T Consensus 199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~ 254 (330)
T PRK12480 199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLL 254 (330)
T ss_pred CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCee
Confidence 8998887642 234444444443 358889999985 4444 4677766664
No 151
>PRK06141 ornithine cyclodeaminase; Validated
Probab=93.95 E-value=0.95 Score=45.36 Aligned_cols=116 Identities=15% Similarity=0.146 Sum_probs=70.0
Q ss_pred CCCCeEEEEccChHHHHHHHHHHH-CCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeee-cCCcccccc
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHE 281 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i-~~~~ll~~~ 281 (410)
...++|.|.|.|..|+..++.+.. ++.+-|-|.+.+ .+...++.++-... +. ..... +.++.+ .+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs----------~~~a~~~a~~~~~~-g~-~~~~~~~~~~av-~~ 189 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD----------PAKAEALAAELRAQ-GF-DAEVVTDLEAAV-RQ 189 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC----------HHHHHHHHHHHHhc-CC-ceEEeCCHHHHH-hc
Confidence 467899999999999999986654 554434476653 33444333321100 10 11111 222333 48
Q ss_pred cceEeecccC--CcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEecc
Q 015287 282 CDVLVPCALG--GVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPD 333 (410)
Q Consensus 282 ~DvliPaA~~--~~I~~~na~~i~akiIvEgAN~p~t~~A~~iL~~rGI~v~PD 333 (410)
|||++=|.-. .+++.+..+. .+-+.+=|++.|...|.+..+.+++..|+=|
T Consensus 190 aDIVi~aT~s~~pvl~~~~l~~-g~~i~~ig~~~~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 190 ADIISCATLSTEPLVRGEWLKP-GTHLDLVGNFTPDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred CCEEEEeeCCCCCEecHHHcCC-CCEEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence 9999766542 3455555544 5577788898888888877777777666533
No 152
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=93.94 E-value=0.22 Score=49.58 Aligned_cols=167 Identities=23% Similarity=0.221 Sum_probs=93.7
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccccccceEe
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 286 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~~Dvli 286 (410)
.+|+++|+|++|+..|..|.+.|..+. |.|.+ +++..+..... ++...+...=...++||+|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~-v~~r~----------~~ka~~~~~~~-------Ga~~a~s~~eaa~~aDvVi 62 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVT-VYNRT----------PEKAAELLAAA-------GATVAASPAEAAAEADVVI 62 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEE-EEeCC----------hhhhhHHHHHc-------CCcccCCHHHHHHhCCEEE
Confidence 479999999999999999999999987 77764 34422222221 1221111112345889888
Q ss_pred eccc-----CCcccccc--cccc-cceEEEecCCC-C-CCHHHHHHHHhCCceEeccccccccCcee-------------
Q 015287 287 PCAL-----GGVLNKEN--AADV-KAKFIIEAANH-P-TDPEADEILSKKGVVILPDIYANSGGVTV------------- 343 (410)
Q Consensus 287 PaA~-----~~~I~~~n--a~~i-~akiIvEgAN~-p-~t~~A~~iL~~rGI~v~PD~laNaGGVi~------------- 343 (410)
-|-. ..++..++ +... +-+++++-... | .+.+..+.++++|+.++=--+ +||+.-
T Consensus 63 tmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPV--sGg~~~A~~GtLtimvGG~ 140 (286)
T COG2084 63 TMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPV--SGGVPGAAAGTLTIMVGGD 140 (286)
T ss_pred EecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCc--cCCchhhhhCceEEEeCCC
Confidence 8753 22333211 1111 34677776654 3 356677889999998873222 333321
Q ss_pred -hhHHHhhh--------cccCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 015287 344 -SYFEWVQN--------IQGFM-----WEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAF 393 (410)
Q Consensus 344 -s~~E~~qn--------~~~~~-----w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~ 393 (410)
..||-++. +.+.. -.-+-+++.+-......+.|-+..+++.|+++...-.
T Consensus 141 ~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~ 204 (286)
T COG2084 141 AEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLE 204 (286)
T ss_pred HHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 22332211 11100 0112344445455556677777888888888765433
No 153
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=93.89 E-value=0.19 Score=47.36 Aligned_cols=139 Identities=21% Similarity=0.202 Sum_probs=82.7
Q ss_pred CchhHHHHHHHHHHHH-----HHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHH
Q 015287 182 EAATGLGVFFATEALL-----AEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLK 255 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~-----~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~ 255 (410)
.+.|.+||+..++..= +..|.+++|++|+|.|= ..||.-++.+|.++||.|. ++|++|..+-..+-
T Consensus 33 ~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVt-i~~~~~~~~~~~~~------- 104 (197)
T cd01079 33 LPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVY-SVDINGIQVFTRGE------- 104 (197)
T ss_pred cCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EEecCccccccccc-------
Confidence 4799999987766430 01245899999999995 6799999999999999998 99998865522211
Q ss_pred HHHhCCCcccCCCCeeecC--Cccc--ccccceEeeccc-CCc-ccccccccccceEEEecCCCCCCHHHHHHHHhCCce
Q 015287 256 YKKSNKSLNDFQGGNAMDL--NDLL--VHECDVLVPCAL-GGV-LNKENAADVKAKFIIEAANHPTDPEADEILSKKGVV 329 (410)
Q Consensus 256 ~~~~~g~v~~~~~~~~i~~--~~ll--~~~~DvliPaA~-~~~-I~~~na~~i~akiIvEgAN~p~t~~A~~iL~~rGI~ 329 (410)
++.. . .....+ ..+. ...+||+|-|.. .+. |+.+.... .|-+|==|-|.-.. +.+ .++-=.
T Consensus 105 ------~~~h-s-~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~~d~ik~-GavVIDVGi~~dvd---~~v-~~~as~ 171 (197)
T cd01079 105 ------SIRH-E-KHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVPTELLKD-GAICINFASIKNFE---PSV-KEKASI 171 (197)
T ss_pred ------cccc-c-cccccchhhHHHHHhhhCCEEEEccCCCCCccCHHHcCC-CcEEEEcCCCcCcc---HhH-HhhcCE
Confidence 1100 0 000001 0122 358899998875 455 67777665 34333334443222 122 222224
Q ss_pred EeccccccccCceehh
Q 015287 330 ILPDIYANSGGVTVSY 345 (410)
Q Consensus 330 v~PD~laNaGGVi~s~ 345 (410)
+.|= -|.++++.
T Consensus 172 iTPv----VGpvTva~ 183 (197)
T cd01079 172 YVPS----IGKVTIAM 183 (197)
T ss_pred eCCC----cCHHHHHH
Confidence 5662 66665554
No 154
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=93.84 E-value=0.66 Score=47.22 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=27.6
Q ss_pred CeEEEEccChHHHHHHHHHHHC---CCEEEEEECC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEH---GGKVVAVSDI 238 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~---GakvVaVsD~ 238 (410)
.||+|-|||-+|+.+.|.+.+. ..+||+|-|.
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~ 36 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT 36 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC
Confidence 4899999999999999997654 5899999874
No 155
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=93.84 E-value=0.56 Score=47.76 Aligned_cols=32 Identities=34% Similarity=0.549 Sum_probs=27.8
Q ss_pred CeEEEEccChHHHHHHHHHHH-CCCEEEEEECC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDI 238 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~ 238 (410)
.||+|-|||-+|+.+.|.+.+ ...+||+|-|.
T Consensus 3 ~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~ 35 (337)
T PTZ00023 3 VKLGINGFGRIGRLVFRAALEREDVEVVAINDP 35 (337)
T ss_pred eEEEEECcChHHHHHHHHHHhcCCeEEEEecCC
Confidence 589999999999999999764 46899999874
No 156
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.84 E-value=0.33 Score=48.23 Aligned_cols=83 Identities=14% Similarity=0.178 Sum_probs=61.9
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN 260 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~ 260 (410)
.++|..|++..+ ++++.+++|++|+|.|= ..||+-++.+|.++++.|. ++.++- + |+.+
T Consensus 138 ~PcTp~aii~lL----~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt-~chs~T----~---dl~~-------- 197 (282)
T PRK14180 138 ESCTPKGIMTML----REYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVT-TCHRFT----T---DLKS-------- 197 (282)
T ss_pred CCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EEcCCC----C---CHHH--------
Confidence 578999887655 45789999999999994 7799999999999999987 776631 0 1111
Q ss_pred CCcccCCCCeeecCCcccccccceEeeccc-CCccccccccc
Q 015287 261 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAAD 301 (410)
Q Consensus 261 g~v~~~~~~~~i~~~~ll~~~~DvliPaA~-~~~I~~~na~~ 301 (410)
+...+||+|-|.. .+.|+.+..+.
T Consensus 198 -----------------~~k~ADIvIsAvGkp~~i~~~~vk~ 222 (282)
T PRK14180 198 -----------------HTTKADILIVAVGKPNFITADMVKE 222 (282)
T ss_pred -----------------HhhhcCEEEEccCCcCcCCHHHcCC
Confidence 1357888888774 56777766665
No 157
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.84 E-value=2 Score=42.21 Aligned_cols=175 Identities=13% Similarity=0.129 Sum_probs=95.1
Q ss_pred CeEEEEccChHHHHHHHHHHHCCC----EEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeee-cCCcccccc
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGG----KVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHE 281 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~Ga----kvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i-~~~~ll~~~ 281 (410)
++|.++|+|++|+.+++-|.+.|. +|+ ++|.+ .+.+....++.+ .... ++.++. .+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~-v~~r~----------~~~~~~l~~~~g-------~~~~~~~~e~~-~~ 63 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQII-CSDLN----------VSNLKNASDKYG-------ITITTNNNEVA-NS 63 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEE-EECCC----------HHHHHHHHHhcC-------cEEeCCcHHHH-hh
Confidence 479999999999999999998874 354 55653 344444333222 1222 233443 48
Q ss_pred cceEeecccCCcccc---cccccccc-eEEEecCCCCCCHHHHHHHHh--CCceEeccccccccCce-ehhH--------
Q 015287 282 CDVLVPCALGGVLNK---ENAADVKA-KFIIEAANHPTDPEADEILSK--KGVVILPDIYANSGGVT-VSYF-------- 346 (410)
Q Consensus 282 ~DvliPaA~~~~I~~---~na~~i~a-kiIvEgAN~p~t~~A~~iL~~--rGI~v~PD~laNaGGVi-~s~~-------- 346 (410)
|||+|-|--...+.+ +..+.++. ++|+.-+-+-...+-.+.|.. +=+.++|-.-+-.|-=+ .-|+
T Consensus 64 aDiIiLavkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~~~~~~~ 143 (272)
T PRK12491 64 ADILILSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNEMVTEKD 143 (272)
T ss_pred CCEEEEEeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCCCCCHHH
Confidence 999998876543322 22222333 488888876666666666743 33567787665444332 2111
Q ss_pred -HHhh---hcc-cCCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 015287 347 -EWVQ---NIQ-GFMWEEEKVNHELK-------RYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRV 400 (410)
Q Consensus 347 -E~~q---n~~-~~~w~~~~v~~~l~-------~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~ri 400 (410)
+.+. +.- ...|-.|+-.+.+- ..+...++.+.+.+.+.|++..+|-.+++..=+
T Consensus 144 ~~~v~~lf~~~G~~~~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t~~ 209 (272)
T PRK12491 144 IKEVLNIFNIFGQTEVVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAVL 209 (272)
T ss_pred HHHHHHHHHcCCCEEEEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1222 111 12232222221111 123344556667777788887776665544433
No 158
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=93.81 E-value=0.29 Score=48.50 Aligned_cols=165 Identities=18% Similarity=0.167 Sum_probs=91.8
Q ss_pred eEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCee-ecCCcccccccceEe
Q 015287 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNA-MDLNDLLVHECDVLV 286 (410)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~-i~~~~ll~~~~Dvli 286 (410)
+|.++|.|++|+.+++.|.+.|.+|+ |.|.+ + +.+.+ .+ .+ ... .++.++. .+||++|
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~-v~~~~-----~---~~~~~---~~-~g-------~~~~~s~~~~~-~~advVi 60 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLH-VTTIG-----P---VADEL---LS-LG-------AVSVETARQVT-EASDIIF 60 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEE-EEeCC-----H---hHHHH---HH-cC-------CeecCCHHHHH-hcCCEEE
Confidence 69999999999999999999999887 66653 1 11222 11 11 111 1233333 4889999
Q ss_pred ecccCC-----ccccc-c-cccc-cceEEEecCCCC--CCHHHHHHHHhCCceEeccccccccCce----------e---
Q 015287 287 PCALGG-----VLNKE-N-AADV-KAKFIIEAANHP--TDPEADEILSKKGVVILPDIYANSGGVT----------V--- 343 (410)
Q Consensus 287 PaA~~~-----~I~~~-n-a~~i-~akiIvEgAN~p--~t~~A~~iL~~rGI~v~PD~laNaGGVi----------~--- 343 (410)
-|--.. ++..+ . +..+ .-++|++-.... .+.+..+.+.++|+.++--- =+||.. +
T Consensus 61 ~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaP--VsGg~~~a~~g~l~~~~gG~ 138 (292)
T PRK15059 61 IMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAP--VSGGEIGAREGTLSIMVGGD 138 (292)
T ss_pred EeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEec--CCCCHHHHhcCcEEEEEcCC
Confidence 875432 22211 1 1222 346888776543 34556688999999877422 123321 1
Q ss_pred -hhHHHhhhc----cc-C-CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 015287 344 -SYFEWVQNI----QG-F-MWE-------EEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTL 395 (410)
Q Consensus 344 -s~~E~~qn~----~~-~-~w~-------~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~ 395 (410)
..++.++.+ .. . +.. -+-++.-+-......+.|.+..+++.|+++.+...++
T Consensus 139 ~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l 204 (292)
T PRK15059 139 EAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQAL 204 (292)
T ss_pred HHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 112222211 00 0 000 0112333433344667788888999999988776554
No 159
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.75 E-value=0.33 Score=48.57 Aligned_cols=83 Identities=22% Similarity=0.233 Sum_probs=61.1
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN 260 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~ 260 (410)
.++|..|+... ++.++.+++|++|+|.|= .-||.-++.+|.++|+.|. ++.++.. |+++
T Consensus 138 ~PcTp~aii~l----L~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVt-v~hs~T~-------~l~~-------- 197 (297)
T PRK14186 138 RSCTPAGVMRL----LRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVT-IAHSRTQ-------DLAS-------- 197 (297)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCCCC-------CHHH--------
Confidence 46898888655 556789999999999994 7799999999999999987 7765310 1111
Q ss_pred CCcccCCCCeeecCCcccccccceEeeccc-CCccccccccc
Q 015287 261 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAAD 301 (410)
Q Consensus 261 g~v~~~~~~~~i~~~~ll~~~~DvliPaA~-~~~I~~~na~~ 301 (410)
+...+||+|-|.. .+.|+.+....
T Consensus 198 -----------------~~~~ADIvIsAvGkp~~i~~~~ik~ 222 (297)
T PRK14186 198 -----------------ITREADILVAAAGRPNLIGAEMVKP 222 (297)
T ss_pred -----------------HHhhCCEEEEccCCcCccCHHHcCC
Confidence 2346888888764 56777766665
No 160
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=93.73 E-value=1.4 Score=43.32 Aligned_cols=165 Identities=15% Similarity=0.124 Sum_probs=89.3
Q ss_pred EEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeee-cCCcccccccceEeecc
Q 015287 211 IQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECDVLVPCA 289 (410)
Q Consensus 211 IqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~DvliPaA 289 (410)
++|+|++|..+++.|.+.|.+|+ +.|.+ .+.+.+..+. + .... ++.++. .+||++|-|-
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~-g-------~~~~~s~~~~~-~~advVil~v 60 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVR-VFDLF----------PDAVEEAVAA-G-------AQAAASPAEAA-EGADRVITML 60 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEE-EEeCC----------HHHHHHHHHc-C-------CeecCCHHHHH-hcCCEEEEeC
Confidence 46999999999999999999876 55653 2333333222 1 1111 223333 4789999886
Q ss_pred cCCcccc-------ccccccc-ceEEEecCCCC--CCHHHHHHHHhCCceEeccccc-------------cccCceehhH
Q 015287 290 LGGVLNK-------ENAADVK-AKFIIEAANHP--TDPEADEILSKKGVVILPDIYA-------------NSGGVTVSYF 346 (410)
Q Consensus 290 ~~~~I~~-------~na~~i~-akiIvEgAN~p--~t~~A~~iL~~rGI~v~PD~la-------------NaGGVi~s~~ 346 (410)
-...... .-...++ -++|++..... ++.+..+.+.++|+.++---+. -.||-- ..+
T Consensus 61 p~~~~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~-~~~ 139 (288)
T TIGR01692 61 PAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVA-EEF 139 (288)
T ss_pred CChHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCH-HHH
Confidence 5422211 1122332 35777776543 2345567888999988753221 122221 122
Q ss_pred HHhhh----cc----cCCC-CHHH----HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 015287 347 EWVQN----IQ----GFMW-EEEK----VNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLG 396 (410)
Q Consensus 347 E~~qn----~~----~~~w-~~~~----v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A 396 (410)
+.++. +. +... ...+ ++.-+.......+.+.+..+++.|+++.+...++.
T Consensus 140 ~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~ 202 (288)
T TIGR01692 140 AAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIAN 202 (288)
T ss_pred HHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 22221 11 1111 1122 22233333345677888999999999887665544
No 161
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=93.71 E-value=0.82 Score=46.67 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=27.6
Q ss_pred CeEEEEccChHHHHHHHHHHH-CCCEEEEEECC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDI 238 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~ 238 (410)
.||+|-|||-+|+.+.|.+.+ ....||+|-|.
T Consensus 3 ~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~ 35 (343)
T PRK07729 3 TKVAINGFGRIGRMVFRKAIKESAFEIVAINAS 35 (343)
T ss_pred eEEEEECcChHHHHHHHHHhhcCCcEEEEecCC
Confidence 489999999999999999765 45899999774
No 162
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=93.70 E-value=0.16 Score=49.72 Aligned_cols=107 Identities=18% Similarity=0.238 Sum_probs=62.1
Q ss_pred CeEEEEccChHHHHHHHHHHHC-CCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeee-cCCcccccccce
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECDV 284 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~-GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~Dv 284 (410)
+||+|.|+|++|+..++.|.+. +..+++|++.... .+...+.... +.... +.+++ ..++|+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~--------~~~~~~~~~~--------~~~~~~d~~~l-~~~~Dv 64 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS--------IDAVRRALGE--------AVRVVSSVDAL-PQRPDL 64 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC--------HHHHhhhhcc--------CCeeeCCHHHh-ccCCCE
Confidence 5899999999999999999765 6888888864311 1111111100 11112 22445 677999
Q ss_pred EeecccCCccccccccc-c--cceEEEecCC---CC-CCHHHHHHHHhCCceEe
Q 015287 285 LVPCALGGVLNKENAAD-V--KAKFIIEAAN---HP-TDPEADEILSKKGVVIL 331 (410)
Q Consensus 285 liPaA~~~~I~~~na~~-i--~akiIvEgAN---~p-~t~~A~~iL~~rGI~v~ 331 (410)
++.|+..... .+.+.. + +..+|++-.= -+ +.++..+..+++|..+.
T Consensus 65 Vve~t~~~~~-~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~ 117 (265)
T PRK13303 65 VVECAGHAAL-KEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLH 117 (265)
T ss_pred EEECCCHHHH-HHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEE
Confidence 9999865533 444443 3 4568776321 01 12233456777886543
No 163
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.64 E-value=0.041 Score=52.98 Aligned_cols=36 Identities=33% Similarity=0.613 Sum_probs=30.4
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
|+..+|.|.|.|.||+++++.|...|..=+.+.|.+
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 677899999999999999999999997444476754
No 164
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.46 E-value=0.49 Score=47.31 Aligned_cols=115 Identities=20% Similarity=0.151 Sum_probs=63.0
Q ss_pred CCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccC--CC-Ceee-cCCcccccc
Q 015287 206 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDF--QG-GNAM-DLNDLLVHE 281 (410)
Q Consensus 206 g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~--~~-~~~i-~~~~ll~~~ 281 (410)
.++|+|.|.|++|..++..|.+.|..|+ +.|.+.. ..+.+.+.......+.+. +. .... ++.+.+ .+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~-~~~r~~~-------~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~-~~ 74 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVR-LWARRPE-------FAAALAAERENREYLPGVALPAELYPTADPEEAL-AG 74 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEE-EEeCCHH-------HHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH-cC
Confidence 4689999999999999999999999887 5554310 112222211111111111 11 1111 122222 47
Q ss_pred cceEeecccCCccccccccccc-ceEEEecCCCCC-----CHHHHHHHHh---CCceE
Q 015287 282 CDVLVPCALGGVLNKENAADVK-AKFIIEAANHPT-----DPEADEILSK---KGVVI 330 (410)
Q Consensus 282 ~DvliPaA~~~~I~~~na~~i~-akiIvEgAN~p~-----t~~A~~iL~~---rGI~v 330 (410)
||+++-|.-...+ ++..+.++ -.+|+.-+|+-. .....+.+.+ +++.+
T Consensus 75 aD~Vi~~v~~~~~-~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~ 131 (328)
T PRK14618 75 ADFAVVAVPSKAL-RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAV 131 (328)
T ss_pred CCEEEEECchHHH-HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEE
Confidence 9999988755543 44434443 246777788521 2344456655 66543
No 165
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=93.43 E-value=0.15 Score=48.95 Aligned_cols=79 Identities=20% Similarity=0.269 Sum_probs=53.3
Q ss_pred CeEEEEccChHHHHHHHHHHHC--CCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccccccce
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEH--GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDV 284 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~--GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~~Dv 284 (410)
++|.|+|+|.+|..+.+++.+- .++.++|.|.+ .++..+..+..+. -...+-++++ .+.|+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~----------~ek~~~~~~~~~~------~~~s~ide~~-~~~Dl 63 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRD----------EEKAKELEASVGR------RCVSDIDELI-AEVDL 63 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCC----------HHHHHHHHhhcCC------CccccHHHHh-hccce
Confidence 4789999999999999999643 58999999985 3444443332211 1112335666 79999
Q ss_pred EeecccCCcccccccccc
Q 015287 285 LVPCALGGVLNKENAADV 302 (410)
Q Consensus 285 liPaA~~~~I~~~na~~i 302 (410)
+++||....+-+---+.+
T Consensus 64 vVEaAS~~Av~e~~~~~L 81 (255)
T COG1712 64 VVEAASPEAVREYVPKIL 81 (255)
T ss_pred eeeeCCHHHHHHHhHHHH
Confidence 999998776654433333
No 166
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.35 E-value=0.28 Score=49.85 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=32.1
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 203 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
.|+.++|.|.|.|.+|+.+|+.|...|..=+.+.|.+
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3788999999999999999999999998555588865
No 167
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=93.34 E-value=2.1 Score=42.24 Aligned_cols=116 Identities=21% Similarity=0.225 Sum_probs=72.5
Q ss_pred CeEEEEccChHHHHHHHHHHHCC----CEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCccccccc
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHG----GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHEC 282 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G----akvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~~ 282 (410)
+++.++|+||+|+.++.-|.+.| ..|+ |++.+ .+.+.+..++ |+.. ..++.+-+..++
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~-v~~~~----------~e~~~~l~~~------~g~~-~~~~~~~~~~~a 63 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEII-VTNRS----------EEKRAALAAE------YGVV-TTTDNQEAVEEA 63 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEE-EeCCC----------HHHHHHHHHH------cCCc-ccCcHHHHHhhC
Confidence 57999999999999999999999 3555 88874 2333333333 3221 123334455689
Q ss_pred ceEeecccCCcccccccccc----cceEEEecCCCCCCHHHHHHHH-hCCceEeccccccccCc
Q 015287 283 DVLVPCALGGVLNKENAADV----KAKFIIEAANHPTDPEADEILS-KKGVVILPDIYANSGGV 341 (410)
Q Consensus 283 DvliPaA~~~~I~~~na~~i----~akiIvEgAN~p~t~~A~~iL~-~rGI~v~PD~laNaGGV 341 (410)
|+++.|--+..+- +...++ +-|+|+--|=+-....-.+.|- .+=+.++|..-+-.|--
T Consensus 64 dvv~LavKPq~~~-~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~g 126 (266)
T COG0345 64 DVVFLAVKPQDLE-EVLSKLKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGAG 126 (266)
T ss_pred CEEEEEeChHhHH-HHHHHhhcccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCChHHHHcCc
Confidence 9999986554332 223333 4677777775555555566664 34456888876655533
No 168
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.34 E-value=0.41 Score=47.50 Aligned_cols=83 Identities=19% Similarity=0.189 Sum_probs=61.1
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN 260 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~ 260 (410)
.++|..|+... +++++.+++|++|+|.|= ..||.-++.+|.++++.|. ++.++. + |++
T Consensus 137 ~PcTp~avi~l----l~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVt-ichs~T----~---nl~--------- 195 (282)
T PRK14182 137 RPCTPAGVMRM----LDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVT-IAHSRT----A---DLA--------- 195 (282)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC----C---CHH---------
Confidence 46898888665 456689999999999994 7799999999999999887 776631 0 111
Q ss_pred CCcccCCCCeeecCCcccccccceEeeccc-CCccccccccc
Q 015287 261 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAAD 301 (410)
Q Consensus 261 g~v~~~~~~~~i~~~~ll~~~~DvliPaA~-~~~I~~~na~~ 301 (410)
+ +...+||+|-|+. .+.|+.+....
T Consensus 196 ---------------~-~~~~ADIvI~AvGk~~~i~~~~ik~ 221 (282)
T PRK14182 196 ---------------G-EVGRADILVAAIGKAELVKGAWVKE 221 (282)
T ss_pred ---------------H-HHhhCCEEEEecCCcCccCHHHcCC
Confidence 1 1346888888874 56677766664
No 169
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.31 E-value=0.29 Score=48.57 Aligned_cols=54 Identities=24% Similarity=0.234 Sum_probs=45.5
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccC-hHHHHHHHHHHHCCCEEEEEECCC
Q 015287 181 REAATGLGVFFATEALLAEHGKSISNMKFAIQGFG-NVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 181 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
-.++|..|+.. ++++++.+++|++|+|.|-+ .||.-++.+|.++++.|. ++.+.
T Consensus 136 ~~PcTp~avi~----lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVt-i~hs~ 190 (281)
T PRK14183 136 FVPCTPLGVME----LLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVD-ICHIF 190 (281)
T ss_pred CCCCcHHHHHH----HHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC
Confidence 35789888855 45667899999999999976 899999999999999887 87763
No 170
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=93.29 E-value=0.3 Score=49.47 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=30.4
Q ss_pred CCeEEEEccChHHHHHHHHHHHC-CCEEEEEECCC
Q 015287 206 NMKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDIT 239 (410)
Q Consensus 206 g~~vaIqGfGnVG~~~a~~L~~~-GakvVaVsD~~ 239 (410)
..||+|.|+|++|+..++.+.+. +..+|+|.|.+
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~ 37 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR 37 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC
Confidence 47999999999999999999764 79999999986
No 171
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.26 E-value=0.5 Score=47.30 Aligned_cols=83 Identities=18% Similarity=0.216 Sum_probs=60.9
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHC----CCEEEEEECCCCceeCCCCCCHHHHHHH
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEH----GGKVVAVSDITGAIKNPNGIDVPALLKY 256 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~----GakvVaVsD~~G~i~~~~GlDi~~l~~~ 256 (410)
.++|..|++.. ++.++.+++|++|+|.|= ..||+-++.+|.++ ++.|. ++.++. + |+
T Consensus 137 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVt-vchs~T----~---~l------ 198 (297)
T PRK14167 137 KPCTPHGIQKL----LAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVT-VCHSRT----D---DL------ 198 (297)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEE-EeCCCC----C---CH------
Confidence 47899888665 456789999999999994 77999999999887 78776 776642 0 11
Q ss_pred HHhCCCcccCCCCeeecCCcccccccceEeeccc-CCccccccccc
Q 015287 257 KKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAAD 301 (410)
Q Consensus 257 ~~~~g~v~~~~~~~~i~~~~ll~~~~DvliPaA~-~~~I~~~na~~ 301 (410)
.-....+||+|-|+. .+.|+.+..+.
T Consensus 199 -------------------~~~~~~ADIvIsAvGkp~~i~~~~ik~ 225 (297)
T PRK14167 199 -------------------AAKTRRADIVVAAAGVPELIDGSMLSE 225 (297)
T ss_pred -------------------HHHHhhCCEEEEccCCcCccCHHHcCC
Confidence 112457888888774 57777766665
No 172
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=93.23 E-value=0.23 Score=41.62 Aligned_cols=107 Identities=22% Similarity=0.290 Sum_probs=63.3
Q ss_pred CeEEEEccChHHHHHHHHHHHC--CCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccc-cccc
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEH--GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV-HECD 283 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~--GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~-~~~D 283 (410)
.||+|+|+|+.|+.-.+.+.+. +.++++|+|.+ .+...+..++.+ +..| -+.+++++ .++|
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~----------~~~~~~~~~~~~-~~~~-----~~~~~ll~~~~~D 64 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPD----------PERAEAFAEKYG-IPVY-----TDLEELLADEDVD 64 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSS----------HHHHHHHHHHTT-SEEE-----SSHHHHHHHTTES
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCC----------HHHHHHHHHHhc-ccch-----hHHHHHHHhhcCC
Confidence 3799999999999888777654 68999999985 344444433322 2122 23456775 4799
Q ss_pred eEeecccCCccccccccc---ccceEEEecCCCCCCHHHHH---HHHhCCceE
Q 015287 284 VLVPCALGGVLNKENAAD---VKAKFIIEAANHPTDPEADE---ILSKKGVVI 330 (410)
Q Consensus 284 vliPaA~~~~I~~~na~~---i~akiIvEgAN~p~t~~A~~---iL~~rGI~v 330 (410)
+.+-|.-. ..+.+-+.. -+..+++|=-=.....++++ ..+++|+.+
T Consensus 65 ~V~I~tp~-~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 65 AVIIATPP-SSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp EEEEESSG-GGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred EEEEecCC-cchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 99988533 333333322 24478888411111233433 456777654
No 173
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=93.20 E-value=0.12 Score=46.84 Aligned_cols=34 Identities=35% Similarity=0.484 Sum_probs=28.0
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+...+|+|.|.|+||.++++.|...|++++ +.|.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~-~~d~ 51 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVV-VPDE 51 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-EEE-EEES
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCCEEE-eccC
Confidence 566899999999999999999999999999 5564
No 174
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.19 E-value=0.33 Score=48.25 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=61.9
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHh
Q 015287 181 REAATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKS 259 (410)
Q Consensus 181 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~ 259 (410)
..++|.+|+...+ ++++.+++|++|+|.|= ..||+-++.+|.++++.|. ++.++. -|+.+
T Consensus 135 ~~PcTp~avi~lL----~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt-ichs~T-------~~l~~------- 195 (282)
T PRK14169 135 VVASTPYGIMALL----DAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVT-IAHSKT-------RNLKQ------- 195 (282)
T ss_pred CCCCCHHHHHHHH----HHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EECCCC-------CCHHH-------
Confidence 3579999987654 56789999999999995 7799999999999999987 776642 01111
Q ss_pred CCCcccCCCCeeecCCcccccccceEeeccc-CCccccccccc
Q 015287 260 NKSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAAD 301 (410)
Q Consensus 260 ~g~v~~~~~~~~i~~~~ll~~~~DvliPaA~-~~~I~~~na~~ 301 (410)
+...+||+|-|.. .+.|+.+..+.
T Consensus 196 ------------------~~~~ADIvI~AvG~p~~i~~~~vk~ 220 (282)
T PRK14169 196 ------------------LTKEADILVVAVGVPHFIGADAVKP 220 (282)
T ss_pred ------------------HHhhCCEEEEccCCcCccCHHHcCC
Confidence 2346788887774 56677666654
No 175
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.18 E-value=2.4 Score=41.51 Aligned_cols=100 Identities=12% Similarity=0.139 Sum_probs=57.0
Q ss_pred CCCeEEEEccChHHHHHHHHHHHCC----CEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeee-cCCcccc
Q 015287 205 SNMKFAIQGFGNVGSWAAKFFHEHG----GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV 279 (410)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~G----akvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i-~~~~ll~ 279 (410)
+.++|.++|.|++|+.+++-|.+.| .+|+ ++|.+- .+.+.......+ .... ++.++.
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~-v~~r~~---------~~~~~~l~~~~g-------~~~~~~~~e~~- 63 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQIT-VSNRSN---------ETRLQELHQKYG-------VKGTHNKKELL- 63 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEE-EECCCC---------HHHHHHHHHhcC-------ceEeCCHHHHH-
Confidence 4579999999999999999999887 4554 565421 122333332211 1111 223333
Q ss_pred cccceEeecccCCccccc---cccccc-ceEEEecCCCCCCHH-HHHHH
Q 015287 280 HECDVLVPCALGGVLNKE---NAADVK-AKFIIEAANHPTDPE-ADEIL 323 (410)
Q Consensus 280 ~~~DvliPaA~~~~I~~~---na~~i~-akiIvEgAN~p~t~~-A~~iL 323 (410)
.+|||+|-|--...+.+. ....++ -++|+.-+++- +++ ..+.+
T Consensus 64 ~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~~aGi-~~~~l~~~~ 111 (279)
T PRK07679 64 TDANILFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGV-STHSIRNLL 111 (279)
T ss_pred hcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEECCCC-CHHHHHHHc
Confidence 478999988755443221 112232 35888877654 444 44444
No 176
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.12 E-value=0.29 Score=48.57 Aligned_cols=54 Identities=19% Similarity=0.176 Sum_probs=45.6
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccC-hHHHHHHHHHHHCCCEEEEEECCC
Q 015287 181 REAATGLGVFFATEALLAEHGKSISNMKFAIQGFG-NVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 181 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
-.+.|..|+...+ ++++.+++|++|+|.|.+ .||+.++.+|..+|+.|. +++++
T Consensus 131 ~~PcTp~av~~ll----~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVt-v~hs~ 185 (279)
T PRK14178 131 FAPCTPNGIMTLL----HEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVT-ICHSK 185 (279)
T ss_pred CCCCCHHHHHHHH----HHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeE-EEecC
Confidence 3578999887654 567899999999999997 999999999999999987 66653
No 177
>PLN02306 hydroxypyruvate reductase
Probab=93.11 E-value=0.13 Score=53.13 Aligned_cols=118 Identities=21% Similarity=0.281 Sum_probs=68.8
Q ss_pred CCCCCCCeEEEEccChHHHHHHHHHH-HCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCC-Cc---ccCC-CCeee-c
Q 015287 201 GKSISNMKFAIQGFGNVGSWAAKFFH-EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNK-SL---NDFQ-GGNAM-D 273 (410)
Q Consensus 201 g~~l~g~~vaIqGfGnVG~~~a~~L~-~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g-~v---~~~~-~~~~i-~ 273 (410)
|.++.|+||.|.|+|++|+.+|+.|. ..|++|++ .|.+.. ..+.......+ .+ ...+ ..+.. +
T Consensus 160 g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~-~d~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 229 (386)
T PLN02306 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQS---------TRLEKFVTAYGQFLKANGEQPVTWKRASS 229 (386)
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEE-ECCCCc---------hhhhhhhhhhcccccccccccccccccCC
Confidence 34589999999999999999999985 78999984 454320 00000000000 00 0000 00111 2
Q ss_pred CCcccccccceEeeccc-----CCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q 015287 274 LNDLLVHECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV 329 (410)
Q Consensus 274 ~~~ll~~~~DvliPaA~-----~~~I~~~na~~i~-akiIvEgAN~p~-t~~A-~~iL~~rGI~ 329 (410)
-++++ ..|||++-+.- .+.|+++....++ -.+++--|-+++ ..+| .+.|++.-|.
T Consensus 230 L~ell-~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~ 292 (386)
T PLN02306 230 MEEVL-READVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMF 292 (386)
T ss_pred HHHHH-hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCee
Confidence 23444 36899988652 3345655555554 458888888885 4444 4677776564
No 178
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=93.10 E-value=2.2 Score=42.42 Aligned_cols=128 Identities=20% Similarity=0.239 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHhC--CCCCCCeEEEEccChHHHHHHHHHHHCCC-EEEEEECCCCceeCCCCCCHHHHHHHHHhCCC
Q 015287 186 GLGVFFATEALLAEHG--KSISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDITGAIKNPNGIDVPALLKYKKSNKS 262 (410)
Q Consensus 186 g~Gv~~~~~~~~~~~g--~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~ 262 (410)
|+|+..+++ +.+ .+.+|++++|.|.|..++.++..|.+.|+ +|+ |.+.+ .+...++.+..+.
T Consensus 108 ~~G~~~~L~----~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~-V~NRt----------~~ra~~La~~~~~ 172 (283)
T COG0169 108 GIGFLRALK----EFGLPVDVTGKRVLILGAGGAARAVAFALAEAGAKRIT-VVNRT----------RERAEELADLFGE 172 (283)
T ss_pred HHHHHHHHH----hcCCCcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEE-EEeCC----------HHHHHHHHHHhhh
Confidence 566655544 333 45779999999999999999999999996 465 77764 2333333322111
Q ss_pred cccCCCCeeecCCccccc-ccceEeecccCCcccc-----cccccc-cceEEEecCCCCC-CHHHHHHHHhCCceEe
Q 015287 263 LNDFQGGNAMDLNDLLVH-ECDVLVPCALGGVLNK-----ENAADV-KAKFIIEAANHPT-DPEADEILSKKGVVIL 331 (410)
Q Consensus 263 v~~~~~~~~i~~~~ll~~-~~DvliPaA~~~~I~~-----~na~~i-~akiIvEgAN~p~-t~~A~~iL~~rGI~v~ 331 (410)
...+... ....++-.. +.|++|-|.--+.-.. -+...+ +..++.+---+|. || --+.-+++|..++
T Consensus 173 ~~~~~~~--~~~~~~~~~~~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~~Tp-lL~~A~~~G~~~i 246 (283)
T COG0169 173 LGAAVEA--AALADLEGLEEADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVYNPLETP-LLREARAQGAKTI 246 (283)
T ss_pred ccccccc--ccccccccccccCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEeccCCCCCH-HHHHHHHcCCeEE
Confidence 1100001 111122222 7999997763222111 112223 5678889998985 54 4455677776643
No 179
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=93.09 E-value=0.14 Score=46.86 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=30.5
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCc
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGA 241 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~ 241 (410)
|++++|+|.|||+-|..-|.-|.+.|.+|+ |....+.
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~-Vglr~~s 38 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVI-VGLREGS 38 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEE-EEE-TTC
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEE-EEecCCC
Confidence 578999999999999999999999999998 7776654
No 180
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=93.08 E-value=1.5 Score=46.41 Aligned_cols=37 Identities=27% Similarity=0.480 Sum_probs=31.8
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHC-----CCEEEEEECCCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEH-----GGKVVAVSDITG 240 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~-----GakvVaVsD~~G 240 (410)
.+.++|+|-|||-+|+.++|.+.++ +.+||||-+..+
T Consensus 125 ~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~n 166 (477)
T PRK08289 125 IEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKG 166 (477)
T ss_pred CCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCC
Confidence 5678999999999999999998754 589999987654
No 181
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=93.04 E-value=0.99 Score=46.04 Aligned_cols=32 Identities=34% Similarity=0.339 Sum_probs=27.8
Q ss_pred CeEEEEccChHHHHHHHHHHHC-CCEEEEEECC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDI 238 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~-GakvVaVsD~ 238 (410)
.||+|-|||-+|+.+.|.+.+. ...||+|-|.
T Consensus 3 ~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~ 35 (342)
T PTZ00353 3 ITVGINGFGPVGKAVLFASLTDPLVTVVAVNDA 35 (342)
T ss_pred eEEEEECCChHHHHHHHHHHhcCCcEEEEecCC
Confidence 5899999999999999997654 6899999874
No 182
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.03 E-value=0.074 Score=49.05 Aligned_cols=31 Identities=32% Similarity=0.455 Sum_probs=26.4
Q ss_pred eEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
+|+|.|.|.+|+..|..++..|.+|+ +.|.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~-l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVT-LYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEE-EE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEE-EEECC
Confidence 68999999999999999999999998 77763
No 183
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.92 E-value=0.15 Score=46.18 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=31.4
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEE
Q 015287 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAV 235 (410)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaV 235 (410)
.+++|++|.|.|.|+||...++.|.+.|++|+-|
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VI 42 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVV 42 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 4689999999999999999999999999999844
No 184
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=92.91 E-value=1.2 Score=47.12 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=27.7
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEE
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVV 233 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvV 233 (410)
|+|++|+|.|+|+.|+.-|.-|...|.+|+
T Consensus 34 LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv 63 (487)
T PRK05225 34 LKGKKIVIVGCGAQGLNQGLNMRDSGLDIS 63 (487)
T ss_pred hCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence 899999999999999988888888899887
No 185
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=92.90 E-value=2 Score=42.58 Aligned_cols=136 Identities=17% Similarity=0.226 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhC-CCcc
Q 015287 186 GLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN-KSLN 264 (410)
Q Consensus 186 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~-g~v~ 264 (410)
+.|...+++ ..+.+++++++.|.|.|..|+.++..|.+.|++-|.|.+.+-.-+ + ..+++.+...+. ..+.
T Consensus 110 ~~G~~~~l~----~~~~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~--~--~a~~l~~~l~~~~~~~~ 181 (289)
T PRK12548 110 GLGFVRNLR----EHGVDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFY--E--RAEQTAEKIKQEVPECI 181 (289)
T ss_pred HHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHH--H--HHHHHHHHHhhcCCCce
Confidence 566666654 345568899999999999999999999999997444777641000 0 122232222111 1100
Q ss_pred cCCCCeeecC-Cccc--ccccceEeecccCCcc---ccc---ccccc-cceEEEecCCCCCCHHHHHHHHhCCceEe
Q 015287 265 DFQGGNAMDL-NDLL--VHECDVLVPCALGGVL---NKE---NAADV-KAKFIIEAANHPTDPEADEILSKKGVVIL 331 (410)
Q Consensus 265 ~~~~~~~i~~-~~ll--~~~~DvliPaA~~~~I---~~~---na~~i-~akiIvEgAN~p~t~~A~~iL~~rGI~v~ 331 (410)
.. ...++. +++- -..+|++|=|..-+.- +.. ....+ +-.+|.+-.-+|....--+.-+++|..++
T Consensus 182 -~~-~~d~~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~ 256 (289)
T PRK12548 182 -VN-VYDLNDTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVFRKDLVVADTVYNPKKTKLLEDAEAAGCKTV 256 (289)
T ss_pred -eE-EechhhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEecCCCCCCHHHHHHHHCCCeee
Confidence 00 000111 1111 1357999966532221 110 11122 23578888888853334455667777654
No 186
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=92.88 E-value=0.58 Score=47.68 Aligned_cols=94 Identities=15% Similarity=0.115 Sum_probs=66.6
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHh
Q 015287 181 REAATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKS 259 (410)
Q Consensus 181 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~ 259 (410)
-.+.|..|+...+ ++.+.+++|++++|+|= ..||.-++.+|.++++.|. ++.++- + |+
T Consensus 193 ~~PCTp~avi~LL----~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVT-icHs~T----~---nl--------- 251 (345)
T PLN02897 193 FVSCTPKGCVELL----IRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVS-TVHAFT----K---DP--------- 251 (345)
T ss_pred CcCCCHHHHHHHH----HHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEE-EEcCCC----C---CH---------
Confidence 3579999987655 56789999999999994 6799999999999999987 776531 0 11
Q ss_pred CCCcccCCCCeeecCCcccccccceEeeccc-CCcccccccccccceEEEecCC
Q 015287 260 NKSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEAAN 312 (410)
Q Consensus 260 ~g~v~~~~~~~~i~~~~ll~~~~DvliPaA~-~~~I~~~na~~i~akiIvEgAN 312 (410)
+-+...+||+|-|+. .+.|+.+..+. .|-+|==|-|
T Consensus 252 ----------------~~~~~~ADIvIsAvGkp~~v~~d~vk~-GavVIDVGin 288 (345)
T PLN02897 252 ----------------EQITRKADIVIAAAGIPNLVRGSWLKP-GAVVIDVGTT 288 (345)
T ss_pred ----------------HHHHhhCCEEEEccCCcCccCHHHcCC-CCEEEEcccc
Confidence 112457889988874 56777776665 4433333333
No 187
>PRK14982 acyl-ACP reductase; Provisional
Probab=92.85 E-value=0.35 Score=49.25 Aligned_cols=131 Identities=21% Similarity=0.345 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHC-CC-EEEEEECCCCceeCCCCCCHHHHHHHHHhC
Q 015287 184 ATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEH-GG-KVVAVSDITGAIKNPNGIDVPALLKYKKSN 260 (410)
Q Consensus 184 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~-Ga-kvVaVsD~~G~i~~~~GlDi~~l~~~~~~~ 260 (410)
.|.+-...+++.+.+.++.++++++|.|.|. |.+|+.+++.|.++ |. +++ +.+.+ .+.+.+...+
T Consensus 133 ~T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~li-lv~R~----------~~rl~~La~e- 200 (340)
T PRK14982 133 HTAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELL-LVARQ----------QERLQELQAE- 200 (340)
T ss_pred hHHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEE-EEcCC----------HHHHHHHHHH-
Confidence 4666666788888888898999999999998 89999999999754 64 665 55543 1223222222
Q ss_pred CCcccCCCCeeecCCcccccccceEeeccc--CC-cccccccccccceEEEecCCCC-CCHHHHHHHHhCCceEeccccc
Q 015287 261 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL--GG-VLNKENAADVKAKFIIEAANHP-TDPEADEILSKKGVVILPDIYA 336 (410)
Q Consensus 261 g~v~~~~~~~~i~~~~ll~~~~DvliPaA~--~~-~I~~~na~~i~akiIvEgAN~p-~t~~A~~iL~~rGI~v~PD~la 336 (410)
+..+...+-++.+ .++|+++=|+- .. .|+.+... +-.+|++.|.-. +.|+.. + ||+..
T Consensus 201 -----l~~~~i~~l~~~l-~~aDiVv~~ts~~~~~~I~~~~l~--~~~~viDiAvPRDVd~~v~----~------~~V~v 262 (340)
T PRK14982 201 -----LGGGKILSLEEAL-PEADIVVWVASMPKGVEIDPETLK--KPCLMIDGGYPKNLDTKVQ----G------PGIHV 262 (340)
T ss_pred -----hccccHHhHHHHH-ccCCEEEECCcCCcCCcCCHHHhC--CCeEEEEecCCCCCCcccC----C------CCEEE
Confidence 1111111112233 36899887774 34 36766553 557999999744 555431 2 44445
Q ss_pred cccCceeh
Q 015287 337 NSGGVTVS 344 (410)
Q Consensus 337 NaGGVi~s 344 (410)
=-||++.-
T Consensus 263 ~~gG~V~~ 270 (340)
T PRK14982 263 LKGGIVEH 270 (340)
T ss_pred EeCCcccc
Confidence 46676543
No 188
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=92.79 E-value=0.31 Score=49.47 Aligned_cols=101 Identities=22% Similarity=0.322 Sum_probs=57.9
Q ss_pred hCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccc
Q 015287 200 HGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV 279 (410)
Q Consensus 200 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~ 279 (410)
+|.++.|+||.|.|+|.+|+.+|+.|...|..+. -+.... .-.+...++.. +.++-++++
T Consensus 156 ~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~-y~~r~~-------~~~~~~~~~~~-----------~~~d~~~~~- 215 (336)
T KOG0069|consen 156 LGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVIL-YHSRTQ-------LPPEEAYEYYA-----------EFVDIEELL- 215 (336)
T ss_pred ccccccCCEEEEecCcHHHHHHHHhhhhccceee-eecccC-------CchhhHHHhcc-----------cccCHHHHH-
Confidence 3567999999999999999999999999994443 333321 12222222211 122233333
Q ss_pred cccceEeeccc-----CCcccccccccc-cceEEEecCCCCC-CHHHH
Q 015287 280 HECDVLVPCAL-----GGVLNKENAADV-KAKFIIEAANHPT-DPEAD 320 (410)
Q Consensus 280 ~~~DvliPaA~-----~~~I~~~na~~i-~akiIvEgAN~p~-t~~A~ 320 (410)
.++|+++-|-- .+.||.+-.... +.-+||-.|-+++ ..++.
T Consensus 216 ~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l 263 (336)
T KOG0069|consen 216 ANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEAL 263 (336)
T ss_pred hhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHH
Confidence 46787777652 223333333333 2237777777774 55443
No 189
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=92.73 E-value=0.21 Score=57.65 Aligned_cols=114 Identities=17% Similarity=0.175 Sum_probs=73.0
Q ss_pred CCCeEEEEccChHHHHHHHHHHHCC-CE------------EEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCC--
Q 015287 205 SNMKFAIQGFGNVGSWAAKFFHEHG-GK------------VVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGG-- 269 (410)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~G-ak------------vVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~-- 269 (410)
+.++|+|.|.|.||+..++.|++.. +. +|+|+|.+ .+.+.+..+. +++.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~----------~~~a~~la~~------~~~~~~ 631 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY----------LKDAKETVEG------IENAEA 631 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC----------HHHHHHHHHh------cCCCce
Confidence 4679999999999999999998643 33 57788874 3344333332 2221
Q ss_pred eee---cCCcccc--cccceEeecccCCccccccccc---ccceEEEecCCCCCCHHHHHHHHhCCceEecccc
Q 015287 270 NAM---DLNDLLV--HECDVLVPCALGGVLNKENAAD---VKAKFIIEAANHPTDPEADEILSKKGVVILPDIY 335 (410)
Q Consensus 270 ~~i---~~~~ll~--~~~DvliPaA~~~~I~~~na~~---i~akiIvEgAN~p~t~~A~~iL~~rGI~v~PD~l 335 (410)
..+ +.+++.. .++|+.|=|. +...+...|.. -+..+++|.-..+-+.+.++..+++|+.++|++-
T Consensus 632 v~lDv~D~e~L~~~v~~~DaVIsal-P~~~H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e~G 704 (1042)
T PLN02819 632 VQLDVSDSESLLKYVSQVDVVISLL-PASCHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCEMG 704 (1042)
T ss_pred EEeecCCHHHHHHhhcCCCEEEECC-CchhhHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEECCc
Confidence 111 2245554 4799998875 55566655543 3667888873222233345678899999998765
No 190
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.62 E-value=0.31 Score=49.63 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=30.6
Q ss_pred CCCeEEEEccChHHHHHHHHHHHCCCEEEEEECC
Q 015287 205 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
.|.+|+|.|+|.+|..++++....|++|++++-+
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~ 199 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRS 199 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCC
Confidence 5899999999999999999999999999977544
No 191
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.60 E-value=0.73 Score=46.03 Aligned_cols=83 Identities=17% Similarity=0.165 Sum_probs=60.1
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHC----CCEEEEEECCCCceeCCCCCCHHHHHHH
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEH----GGKVVAVSDITGAIKNPNGIDVPALLKY 256 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~----GakvVaVsD~~G~i~~~~GlDi~~l~~~ 256 (410)
.++|..||... ++.++.+++|++|+|.|- .-||+-++.+|.++ ++.|. ++.++.. |+.+
T Consensus 137 ~PcTp~av~~l----L~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVt-vchs~T~-------nl~~---- 200 (293)
T PRK14185 137 VSATPNGILEL----LKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVT-VCHSRSK-------NLKK---- 200 (293)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEE-EecCCCC-------CHHH----
Confidence 57899988665 456789999999999995 77999999999988 57776 7766420 1111
Q ss_pred HHhCCCcccCCCCeeecCCcccccccceEeeccc-CCccccccccc
Q 015287 257 KKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAAD 301 (410)
Q Consensus 257 ~~~~g~v~~~~~~~~i~~~~ll~~~~DvliPaA~-~~~I~~~na~~ 301 (410)
+...+||+|-|.. .+.|+.+....
T Consensus 201 ---------------------~~~~ADIvIsAvGkp~~i~~~~vk~ 225 (293)
T PRK14185 201 ---------------------ECLEADIIIAALGQPEFVKADMVKE 225 (293)
T ss_pred ---------------------HHhhCCEEEEccCCcCccCHHHcCC
Confidence 1246788887764 56677666654
No 192
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.57 E-value=0.96 Score=48.57 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=31.0
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
..+.+|+|.|+|.+|..++..+...|++|+ +.|.+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~-v~d~~ 196 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVR-AFDTR 196 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 457899999999999999999999999976 66765
No 193
>PRK14852 hypothetical protein; Provisional
Probab=92.54 E-value=0.41 Score=54.81 Aligned_cols=121 Identities=12% Similarity=0.068 Sum_probs=70.1
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCccccccc
Q 015287 203 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHEC 282 (410)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~~ 282 (410)
.|+..+|+|.|.|.||+.+++.|...|..=+.++|-+- ++..-|+-+-+. ....+ +-+.++ +..+.+.+.+.
T Consensus 329 kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~--Ve~SNLNRQ~l~----~~~dI-G~~Kae-vaa~~l~~INP 400 (989)
T PRK14852 329 RLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA--YSPVNLNRQYGA----SIASF-GRGKLD-VMTERALSVNP 400 (989)
T ss_pred HHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE--ecccccccccCC----ChhhC-CChHHH-HHHHHHHHHCC
Confidence 48899999999999999999999999986666888642 111111111000 00000 000000 11122334444
Q ss_pred ceEeecccCCcccccccccc--cceEEEecCCCCCCHH---HHHHHHhCCceEec
Q 015287 283 DVLVPCALGGVLNKENAADV--KAKFIIEAANHPTDPE---ADEILSKKGVVILP 332 (410)
Q Consensus 283 DvliPaA~~~~I~~~na~~i--~akiIvEgAN~p~t~~---A~~iL~~rGI~v~P 332 (410)
++=|-+- ..-|+++|+..+ ++.+|+++..++.+.. ......++||.++=
T Consensus 401 ~v~I~~~-~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ 454 (989)
T PRK14852 401 FLDIRSF-PEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVIT 454 (989)
T ss_pred CCeEEEE-ecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEE
Confidence 4444442 224677888775 7889999998865422 22345788987763
No 194
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=92.52 E-value=0.19 Score=50.94 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=30.2
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEE
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAV 235 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaV 235 (410)
|+|+||+|+|+|++|+..|+.|...|.+|+..
T Consensus 14 LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~ 45 (335)
T PRK13403 14 LQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVG 45 (335)
T ss_pred hCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEE
Confidence 89999999999999999999999999999843
No 195
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=92.52 E-value=3.6 Score=40.82 Aligned_cols=135 Identities=15% Similarity=0.160 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcc
Q 015287 185 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLN 264 (410)
Q Consensus 185 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~ 264 (410)
=+.|...+++ ..+.+++++++.|.|.|..++.++-.|.+.|++-|.|.+.+-. ..++..+..++-..
T Consensus 107 D~~Gf~~~l~----~~~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~-------~~~ka~~la~~~~~-- 173 (288)
T PRK12749 107 DGTGHIRAIK----ESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE-------FFDKALAFAQRVNE-- 173 (288)
T ss_pred CHHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc-------HHHHHHHHHHHhhh--
Confidence 3567666665 4567889999999999999999999998899865558887421 11222222221100
Q ss_pred cCCC-CeeecCCc---cc--ccccceEeecccCCccc---cc---ccccc-cceEEEecCCCCCCHHHHHHHHhCCceEe
Q 015287 265 DFQG-GNAMDLND---LL--VHECDVLVPCALGGVLN---KE---NAADV-KAKFIIEAANHPTDPEADEILSKKGVVIL 331 (410)
Q Consensus 265 ~~~~-~~~i~~~~---ll--~~~~DvliPaA~~~~I~---~~---na~~i-~akiIvEgAN~p~t~~A~~iL~~rGI~v~ 331 (410)
.+.. ....+.++ +. ..++|++|-|.--+.-. .. ....+ .-.+|.+-.-+|....--+.-+++|..++
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~ 253 (288)
T PRK12749 174 NTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLLQQAQQAGCKTI 253 (288)
T ss_pred ccCceEEEechhhhhhhhhhcccCCEEEECCCCCCCCCCCCCCCCcHHHCCCCCEEEEecCCCccCHHHHHHHHCCCeEE
Confidence 0100 01111111 11 13689999776322211 10 11112 23578888888853334455667777754
Q ss_pred c
Q 015287 332 P 332 (410)
Q Consensus 332 P 332 (410)
+
T Consensus 254 ~ 254 (288)
T PRK12749 254 D 254 (288)
T ss_pred C
Confidence 3
No 196
>PRK14851 hypothetical protein; Provisional
Probab=92.47 E-value=0.11 Score=57.65 Aligned_cols=120 Identities=13% Similarity=0.120 Sum_probs=68.2
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccccccc
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECD 283 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~~D 283 (410)
|++.+|+|.|.|.||+++++.|...|..=+-+.|.+- +++.-|+-+-+. ....+ +.+.++ +-.+.+.+...+
T Consensus 41 L~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~--ve~sNLNRQ~~~----~~~dv-G~~Kv~-v~~~~l~~inP~ 112 (679)
T PRK14851 41 LAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ--FEPVNVNRQFGA----RVPSF-GRPKLA-VMKEQALSINPF 112 (679)
T ss_pred HhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE--ecccccccCcCc----ChhhC-CCHHHH-HHHHHHHHhCCC
Confidence 6889999999999999999999999986555888642 111112211000 00000 000000 111223333334
Q ss_pred eEeecccCCcccccccccc--cceEEEecCCCCCCH---HHHHHHHhCCceEec
Q 015287 284 VLVPCALGGVLNKENAADV--KAKFIIEAANHPTDP---EADEILSKKGVVILP 332 (410)
Q Consensus 284 vliPaA~~~~I~~~na~~i--~akiIvEgAN~p~t~---~A~~iL~~rGI~v~P 332 (410)
+=|-+ ...-|+++|+..+ ++.+|+++..++... ...+...++||.++=
T Consensus 113 ~~I~~-~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~ 165 (679)
T PRK14851 113 LEITP-FPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVIT 165 (679)
T ss_pred CeEEE-EecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEE
Confidence 44433 2345677787664 788999998876321 233456788887763
No 197
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=92.44 E-value=4.5 Score=41.90 Aligned_cols=32 Identities=38% Similarity=0.538 Sum_probs=28.1
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
++|+|+|.|.||..+|..|.+.|.+|++ .|.+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~-~d~~ 32 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTG-VDID 32 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEE-EECC
Confidence 4799999999999999999999999984 5654
No 198
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=92.38 E-value=0.44 Score=47.78 Aligned_cols=115 Identities=21% Similarity=0.167 Sum_probs=65.2
Q ss_pred CCCeEEEEccChHHHHHHHHHH-HCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccc----
Q 015287 205 SNMKFAIQGFGNVGSWAAKFFH-EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV---- 279 (410)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~-~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~---- 279 (410)
+..+|+|+|.|++|...+..+. ..+.++++++|.+. + . ..++..++.| +..+. -+-++++.
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~-----e---s-~gla~A~~~G-i~~~~----~~ie~LL~~~~~ 68 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDP-----E---S-DGLARARRLG-VATSA----EGIDGLLAMPEF 68 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCCh-----h---h-HHHHHHHHcC-CCccc----CCHHHHHhCcCC
Confidence 4578999999999998665554 56789999998742 1 1 1122223222 21110 11244554
Q ss_pred cccceEeecccCCcccccccccc---cceEEEec--CCCCC-CHH--HHHHHHhC--CceEeccc
Q 015287 280 HECDVLVPCALGGVLNKENAADV---KAKFIIEA--ANHPT-DPE--ADEILSKK--GVVILPDI 334 (410)
Q Consensus 280 ~~~DvliPaA~~~~I~~~na~~i---~akiIvEg--AN~p~-t~~--A~~iL~~r--GI~v~PD~ 334 (410)
.++|+.+-|+ ++..+.+++.+. ++.+|.+- +++|+ -|+ .++.+..+ ++...|.-
T Consensus 69 ~dIDiVf~AT-~a~~H~e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ 132 (302)
T PRK08300 69 DDIDIVFDAT-SAGAHVRHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQ 132 (302)
T ss_pred CCCCEEEECC-CHHHHHHHHHHHHHcCCeEEECCccccCCcccCcCCHHHHhcccCCCEEECccH
Confidence 4689999886 455666666653 55666653 34552 232 23444433 55554443
No 199
>PRK07877 hypothetical protein; Provisional
Probab=92.37 E-value=0.32 Score=54.29 Aligned_cols=124 Identities=12% Similarity=0.191 Sum_probs=69.9
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCC--EEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCee-ecCCccccc
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGG--KVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNA-MDLNDLLVH 280 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~Ga--kvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~-i~~~~ll~~ 280 (410)
|+..+|+|.|.| +|+++|..|...|. +++ +.|.+- ++..-|+ +.. -+..+.-..+. ...+.+.+.
T Consensus 105 L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~-lvD~D~--ve~sNLn-----Rq~---~~~~diG~~Kv~~a~~~l~~i 172 (722)
T PRK07877 105 LGRLRIGVVGLS-VGHAIAHTLAAEGLCGELR-LADFDT--LELSNLN-----RVP---AGVFDLGVNKAVVAARRIAEL 172 (722)
T ss_pred HhcCCEEEEEec-HHHHHHHHHHHccCCCeEE-EEcCCE--Ecccccc-----ccc---CChhhcccHHHHHHHHHHHHH
Confidence 788999999999 99999999999994 665 777642 2222222 100 00001000000 111223333
Q ss_pred ccceEeecccCCcccccccccc--cceEEEecCCCCCC-HHHHHHHHhCCceEeccccccccCce
Q 015287 281 ECDVLVPCALGGVLNKENAADV--KAKFIIEAANHPTD-PEADEILSKKGVVILPDIYANSGGVT 342 (410)
Q Consensus 281 ~~DvliPaA~~~~I~~~na~~i--~akiIvEgAN~p~t-~~A~~iL~~rGI~v~PD~laNaGGVi 342 (410)
+.++=|-+ +..-||++|++.+ ++.+|+++.-+.-+ -...+...++||.++=. +.++|.+
T Consensus 173 np~i~v~~-~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~--~~~~g~~ 234 (722)
T PRK07877 173 DPYLPVEV-FTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMA--TSDRGLL 234 (722)
T ss_pred CCCCEEEE-EeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE--cCCCCCc
Confidence 44444433 2344677777775 67888888876533 23345667888887732 3344554
No 200
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.29 E-value=0.5 Score=39.40 Aligned_cols=102 Identities=25% Similarity=0.343 Sum_probs=58.0
Q ss_pred EEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCccc----ccccce
Q 015287 209 FAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL----VHECDV 284 (410)
Q Consensus 209 vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll----~~~~Dv 284 (410)
|+|.|+|.+|+.+++.|.+.+.+|+ +.|.+ .+...+..++. +.-+. +.. +..+.| -.++|.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vv-vid~d----------~~~~~~~~~~~--~~~i~-gd~-~~~~~l~~a~i~~a~~ 65 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVV-VIDRD----------PERVEELREEG--VEVIY-GDA-TDPEVLERAGIEKADA 65 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEE-EEESS----------HHHHHHHHHTT--SEEEE-S-T-TSHHHHHHTTGGCESE
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEE-EEECC----------cHHHHHHHhcc--ccccc-ccc-hhhhHHhhcCccccCE
Confidence 6899999999999999999777888 55553 34444444432 11110 111 112222 246777
Q ss_pred EeecccCCccc---ccccccc--cceEEEecCCCCCCHHHHHHHHhCCce
Q 015287 285 LVPCALGGVLN---KENAADV--KAKFIIEAANHPTDPEADEILSKKGVV 329 (410)
Q Consensus 285 liPaA~~~~I~---~~na~~i--~akiIvEgAN~p~t~~A~~iL~~rGI~ 329 (410)
++-+.-....| ...++++ ..++|+..- +++..+.|++-|+-
T Consensus 66 vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~~----~~~~~~~l~~~g~d 111 (116)
T PF02254_consen 66 VVILTDDDEENLLIALLARELNPDIRIIARVN----DPENAELLRQAGAD 111 (116)
T ss_dssp EEEESSSHHHHHHHHHHHHHHTTTSEEEEEES----SHHHHHHHHHTT-S
T ss_pred EEEccCCHHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHCCcC
Confidence 77665433322 2233332 467877654 46667888888874
No 201
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=92.24 E-value=2.6 Score=42.16 Aligned_cols=31 Identities=16% Similarity=0.343 Sum_probs=27.3
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
++|+|.|.|.+|+.+|..|.+.|..|+. .|.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~-~~r 33 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTL-IGR 33 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEE-Eec
Confidence 5799999999999999999999999884 444
No 202
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.23 E-value=0.51 Score=46.99 Aligned_cols=54 Identities=19% Similarity=0.192 Sum_probs=45.3
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 181 REAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 181 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
-.++|.+|+...+ ++++.+++|++|+|.| ...||.-++.+|.++++.|. ++.++
T Consensus 134 ~~PcTp~avi~lL----~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt-ichs~ 188 (287)
T PRK14173 134 LEPCTPAGVVRLL----KHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVT-LAHSK 188 (287)
T ss_pred CCCCCHHHHHHHH----HHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EeCCC
Confidence 3578999887654 5678999999999999 47899999999999999887 77663
No 203
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=92.20 E-value=0.4 Score=45.55 Aligned_cols=50 Identities=24% Similarity=0.279 Sum_probs=41.0
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCC
Q 015287 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNK 261 (410)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g 261 (410)
.+++|++|+|.|.|.||..=+++|.+.|++|+-+|+.- .+++....++++
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~----------~~el~~~~~~~~ 57 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF----------EPELKALIEEGK 57 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc----------cHHHHHHHHhcC
Confidence 46899999999999999999999999999999888763 355666555543
No 204
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.18 E-value=0.22 Score=46.89 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=51.3
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccccc
Q 015287 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE 281 (410)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~ 281 (410)
.+++|++|.|.|.|.||...++.|.+.|++|+-|+ .+ +. +++.+.... +.+.-.. ......++ .+
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs-~~--------~~-~~l~~l~~~-~~i~~~~--~~~~~~~l--~~ 70 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVIS-PE--------LT-ENLVKLVEE-GKIRWKQ--KEFEPSDI--VD 70 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEc-CC--------CC-HHHHHHHhC-CCEEEEe--cCCChhhc--CC
Confidence 46899999999999999999999999999998443 21 11 234443332 2221100 01111222 36
Q ss_pred cceEeecccCCcccccccc
Q 015287 282 CDVLVPCALGGVLNKENAA 300 (410)
Q Consensus 282 ~DvliPaA~~~~I~~~na~ 300 (410)
+|++|-|.-...+|..-+.
T Consensus 71 adlViaaT~d~elN~~i~~ 89 (202)
T PRK06718 71 AFLVIAATNDPRVNEQVKE 89 (202)
T ss_pred ceEEEEcCCCHHHHHHHHH
Confidence 7888887665566654443
No 205
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=92.16 E-value=0.2 Score=50.79 Aligned_cols=34 Identities=35% Similarity=0.402 Sum_probs=30.5
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+++++|+|+|+|++|+..|+.|.+.|.+|+ +.+.
T Consensus 15 L~gktIgIIG~GsmG~AlA~~L~~sG~~Vv-v~~r 48 (330)
T PRK05479 15 IKGKKVAIIGYGSQGHAHALNLRDSGVDVV-VGLR 48 (330)
T ss_pred hCCCEEEEEeeHHHHHHHHHHHHHCCCEEE-EEEC
Confidence 889999999999999999999999999987 4443
No 206
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=92.15 E-value=0.24 Score=50.37 Aligned_cols=34 Identities=26% Similarity=0.535 Sum_probs=29.8
Q ss_pred CCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 205 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
...+|+|+||||.|+..|+.|.++|..++ ++|..
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li-~hsRs 84 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLI-CHSRS 84 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeE-ecCcc
Confidence 35789999999999999999999999998 56654
No 207
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.11 E-value=0.44 Score=47.45 Aligned_cols=83 Identities=14% Similarity=0.172 Sum_probs=61.4
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN 260 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~ 260 (410)
.+.|..|+... +++.+.+++|++++|.|= .-||+-++.+|.++++.|. ++.++. -|+.+
T Consensus 139 ~PcTp~av~~l----L~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVt-ichs~T-------~~L~~-------- 198 (288)
T PRK14171 139 IPCTALGCLAV----IKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVT-ICHSKT-------HNLSS-------- 198 (288)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC-------CCHHH--------
Confidence 57899987554 556789999999999995 7799999999999999987 887642 01111
Q ss_pred CCcccCCCCeeecCCcccccccceEeeccc-CCccccccccc
Q 015287 261 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAAD 301 (410)
Q Consensus 261 g~v~~~~~~~~i~~~~ll~~~~DvliPaA~-~~~I~~~na~~ 301 (410)
+...+||+|-|.. .+.|+++....
T Consensus 199 -----------------~~~~ADIvV~AvGkp~~i~~~~vk~ 223 (288)
T PRK14171 199 -----------------ITSKADIVVAAIGSPLKLTAEYFNP 223 (288)
T ss_pred -----------------HHhhCCEEEEccCCCCccCHHHcCC
Confidence 1346788887764 56677766665
No 208
>PLN02688 pyrroline-5-carboxylate reductase
Probab=92.00 E-value=0.67 Score=44.71 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=26.2
Q ss_pred CeEEEEccChHHHHHHHHHHHCCC----EEEEEE-CC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGG----KVVAVS-DI 238 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~Ga----kvVaVs-D~ 238 (410)
+||.++|+|++|+.+++-|.+.|. +|+ ++ |.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~-v~~~r 36 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRIS-TADDS 36 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEE-EEeCC
Confidence 479999999999999999999887 666 44 54
No 209
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=91.97 E-value=1.5 Score=46.05 Aligned_cols=32 Identities=38% Similarity=0.584 Sum_probs=27.8
Q ss_pred CeEEEEccChHHHHHHHHHHHC---CCEEEEEECC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEH---GGKVVAVSDI 238 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~---GakvVaVsD~ 238 (410)
.||+|-|||-+|+.+.|.+.+. ..+||+|-|.
T Consensus 76 ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~ 110 (442)
T PLN02237 76 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 110 (442)
T ss_pred EEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC
Confidence 6899999999999999987643 5899999875
No 210
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.97 E-value=0.44 Score=47.38 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=44.3
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEEECC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
.++|..|+... +++++.+++|++|+|.| ...||+-++.+|.++++.|. ++++
T Consensus 138 ~PcTp~av~~l----L~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt-~chs 190 (284)
T PRK14190 138 LPCTPHGILEL----LKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVT-YCHS 190 (284)
T ss_pred CCCCHHHHHHH----HHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EEeC
Confidence 46898888654 55678999999999999 57899999999999999987 6765
No 211
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=91.93 E-value=0.45 Score=51.34 Aligned_cols=105 Identities=15% Similarity=0.197 Sum_probs=60.2
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCccc----cccc
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL----VHEC 282 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll----~~~~ 282 (410)
-++.|.|+|++|+.+++.|.++|..++ +-|.+ .+.+.+.++.+-.+ +.+ . .++.+.+ -.++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vv-vId~d----------~~~~~~~~~~g~~~--i~G-D-~~~~~~L~~a~i~~a 482 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLV-VIETS----------RTRVDELRERGIRA--VLG-N-AANEEIMQLAHLDCA 482 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEE-EEECC----------HHHHHHHHHCCCeE--EEc-C-CCCHHHHHhcCcccc
Confidence 478999999999999999999999998 56653 44444444321111 101 1 1122333 1367
Q ss_pred ceEeecccCCcccc---ccccc--ccceEEEecCCCCCCHHHHHHHHhCCceE
Q 015287 283 DVLVPCALGGVLNK---ENAAD--VKAKFIIEAANHPTDPEADEILSKKGVVI 330 (410)
Q Consensus 283 DvliPaA~~~~I~~---~na~~--i~akiIvEgAN~p~t~~A~~iL~~rGI~v 330 (410)
|.++-+.-.+.-|. ..+.+ -.+++|+-.. +++..+.|++.|+-+
T Consensus 483 ~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~----~~~~~~~l~~~Gad~ 531 (558)
T PRK10669 483 RWLLLTIPNGYEAGEIVASAREKRPDIEIIARAH----YDDEVAYITERGANQ 531 (558)
T ss_pred CEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHcCCCE
Confidence 86665533221110 11111 1457777543 467778899988753
No 212
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=91.93 E-value=0.35 Score=45.68 Aligned_cols=97 Identities=16% Similarity=0.167 Sum_probs=54.6
Q ss_pred CeEEEEc-cChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCC-Ccc--cCCC-CeeecCCcccccc
Q 015287 207 MKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNK-SLN--DFQG-GNAMDLNDLLVHE 281 (410)
Q Consensus 207 ~~vaIqG-fGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g-~v~--~~~~-~~~i~~~~ll~~~ 281 (410)
++|+|.| .|++|+.+++.|.+.|.+|+ +.+.+ .+.+.+..+... .+. ++.. ....+..+.+ .+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~-v~~r~----------~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~-~~ 68 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKII-IGSRD----------LEKAEEAAAKALEELGHGGSDIKVTGADNAEAA-KR 68 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEE-EEEcC----------HHHHHHHHHHHHhhccccCCCceEEEeChHHHH-hc
Confidence 4799997 89999999999999999887 55543 122222211100 010 1110 0111222332 47
Q ss_pred cceEeecccCCcccc---cccccccceEEEecCCCCC
Q 015287 282 CDVLVPCALGGVLNK---ENAADVKAKFIIEAANHPT 315 (410)
Q Consensus 282 ~DvliPaA~~~~I~~---~na~~i~akiIvEgAN~p~ 315 (410)
+|++|-|.-...+.+ +-...++-++|+..+|+..
T Consensus 69 aDvVilavp~~~~~~~l~~l~~~l~~~vvI~~~ngi~ 105 (219)
T TIGR01915 69 ADVVILAVPWDHVLKTLESLRDELSGKLVISPVVPLA 105 (219)
T ss_pred CCEEEEECCHHHHHHHHHHHHHhccCCEEEEeccCce
Confidence 899998864443321 1122344589999999853
No 213
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=91.88 E-value=2.6 Score=42.95 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=27.6
Q ss_pred CeEEEEccChHHHHHHHHHHHC-CCEEEEEECC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDI 238 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~-GakvVaVsD~ 238 (410)
.+|+|.|||.+|+.+.+.+.+. ..+++++-|.
T Consensus 3 ikigInG~GRiGr~v~r~~~~~~~~~ivaind~ 35 (334)
T PRK08955 3 IKVGINGFGRIGRLALRAAWDWPELEFVQINDP 35 (334)
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 5899999999999999998754 5899988774
No 214
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=91.84 E-value=0.47 Score=47.69 Aligned_cols=86 Identities=24% Similarity=0.342 Sum_probs=51.1
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCC-----------ceeCCCCCC-HHHHHHHHHhCCCcccCCCC-e
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG-----------AIKNPNGID-VPALLKYKKSNKSLNDFQGG-N 270 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G-----------~i~~~~GlD-i~~l~~~~~~~g~v~~~~~~-~ 270 (410)
+++.=|+|+|.|.||+|++.+|.+.|.+=+-|.|-+- ++.+.=|.. ..-|.+|..+--.++....- .
T Consensus 72 l~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~ 151 (430)
T KOG2018|consen 72 LTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNM 151 (430)
T ss_pred hcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHHh
Confidence 7888899999999999999999999975554666321 111222222 22233333332222221100 0
Q ss_pred ---eecCCcccccccceEeecc
Q 015287 271 ---AMDLNDLLVHECDVLVPCA 289 (410)
Q Consensus 271 ---~i~~~~ll~~~~DvliPaA 289 (410)
.-+.++|+..+.|..+.|.
T Consensus 152 l~~~~s~edll~gnPdFvvDci 173 (430)
T KOG2018|consen 152 LWTSSSEEDLLSGNPDFVVDCI 173 (430)
T ss_pred hcCCCchhhhhcCCCCeEeEhh
Confidence 1234678888899999883
No 215
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.77 E-value=0.23 Score=46.81 Aligned_cols=35 Identities=14% Similarity=0.312 Sum_probs=31.2
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEE
Q 015287 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVs 236 (410)
.+++|++|.|.|.|.||..-++.|.+.|++|+-|+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvs 39 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIA 39 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEc
Confidence 35889999999999999999999999999998443
No 216
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=91.65 E-value=0.69 Score=53.21 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=31.2
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
..|++|+|+|.|..|..+|..|..+|++|+ |-|.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vt-v~E~ 414 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVT-AIDG 414 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEE-EEcc
Confidence 478999999999999999999999999998 6664
No 217
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=91.64 E-value=0.94 Score=49.75 Aligned_cols=107 Identities=21% Similarity=0.212 Sum_probs=65.8
Q ss_pred CCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccc----cc
Q 015287 206 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV----HE 281 (410)
Q Consensus 206 g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~----~~ 281 (410)
..+|+|.|||.+|+.+++.|.++|.+++ +-|. |.+.+.+.++. +.-.-|-+ .+..++|+ .+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vv-vID~----------d~~~v~~~~~~-g~~v~~GD---at~~~~L~~agi~~ 464 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMT-VLDH----------DPDHIETLRKF-GMKVFYGD---ATRMDLLESAGAAK 464 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEE-EEEC----------CHHHHHHHHhc-CCeEEEEe---CCCHHHHHhcCCCc
Confidence 3689999999999999999999999998 5576 34555444432 21111111 12233442 36
Q ss_pred cceEeecccCCcccc---cccccc--cceEEEecCCCCCCHHHHHHHHhCCceEe
Q 015287 282 CDVLVPCALGGVLNK---ENAADV--KAKFIIEAANHPTDPEADEILSKKGVVIL 331 (410)
Q Consensus 282 ~DvliPaA~~~~I~~---~na~~i--~akiIvEgAN~p~t~~A~~iL~~rGI~v~ 331 (410)
+|.+|-|.-....|. .++++. +.++|+-.. +++..+.|++.|+-.+
T Consensus 465 A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa~----d~~~~~~L~~~Gad~v 515 (621)
T PRK03562 465 AEVLINAIDDPQTSLQLVELVKEHFPHLQIIARAR----DVDHYIRLRQAGVEKP 515 (621)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEEC----CHHHHHHHHHCCCCEE
Confidence 888887764333332 233332 456777543 4566778999998644
No 218
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=91.60 E-value=0.44 Score=47.81 Aligned_cols=119 Identities=22% Similarity=0.405 Sum_probs=71.8
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccccccc
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECD 283 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~~D 283 (410)
+.|+-++|-|+|+||...|..|.-.|++|+ |+..+. +.+|....+ +| +..+-+|. ..+.|
T Consensus 212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~Vi-vTEiDP---------I~ALQAaMe------G~---~V~tm~ea-~~e~d 271 (434)
T KOG1370|consen 212 IAGKVAVVCGYGDVGKGCAQALKGFGARVI-VTEIDP---------ICALQAAME------GY---EVTTLEEA-IREVD 271 (434)
T ss_pred ecccEEEEeccCccchhHHHHHhhcCcEEE-EeccCc---------hHHHHHHhh------cc---EeeeHHHh-hhcCC
Confidence 778889999999999999999999999998 888752 455544332 22 22222332 34678
Q ss_pred eEeeccc-CCccccccccccc------------ceEEEecCCCC------CCHHHHHHHHhCC---ceEeccccccccCc
Q 015287 284 VLVPCAL-GGVLNKENAADVK------------AKFIIEAANHP------TDPEADEILSKKG---VVILPDIYANSGGV 341 (410)
Q Consensus 284 vliPaA~-~~~I~~~na~~i~------------akiIvEgAN~p------~t~~A~~iL~~rG---I~v~PD~laNaGGV 341 (410)
|||-+.. .++|+.+.-++.+ ..+=|-+-|-| +-|+.|++.-..| |++.-.-+.|-|..
T Consensus 272 ifVTtTGc~dii~~~H~~~mk~d~IvCN~Ghfd~EiDv~~L~~~~~~~~~vk~QvD~~~~~~gr~iIlLAeGRLvNL~Ca 351 (434)
T KOG1370|consen 272 IFVTTTGCKDIITGEHFDQMKNDAIVCNIGHFDTEIDVKWLNTPALTWENVKPQVDRYILPNGKHIILLAEGRLVNLGCA 351 (434)
T ss_pred EEEEccCCcchhhHHHHHhCcCCcEEeccccccceeehhhccCCcceeeecccccceeeccCCcEEEEEecCceeecccc
Confidence 8888764 4666665444432 22333333333 1244455444444 23445556666655
Q ss_pred e
Q 015287 342 T 342 (410)
Q Consensus 342 i 342 (410)
+
T Consensus 352 t 352 (434)
T KOG1370|consen 352 T 352 (434)
T ss_pred c
Confidence 4
No 219
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.58 E-value=0.52 Score=48.16 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=32.0
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
|+..+|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 678999999999999999999999998666688865
No 220
>PRK07340 ornithine cyclodeaminase; Validated
Probab=91.56 E-value=2.3 Score=42.51 Aligned_cols=109 Identities=14% Similarity=0.081 Sum_probs=67.9
Q ss_pred CCCCeEEEEccChHHHHHHHHHHH-CCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCccccccc
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHEC 282 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~~ 282 (410)
...++++|.|.|..|+..++.+.. .+.+-|.|.|.+ .+...++.++-... ++ .....+.++.+ .++
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~----------~~~a~~~a~~~~~~-~~-~~~~~~~~~av-~~a 189 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT----------AASAAAFCAHARAL-GP-TAEPLDGEAIP-EAV 189 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC----------HHHHHHHHHHHHhc-CC-eeEECCHHHHh-hcC
Confidence 466899999999999999999864 676666677764 34444433332111 11 11111223344 499
Q ss_pred ceEeeccc--CCcccccccccccceEEEecCCCCCCHHHHHHHHhCC
Q 015287 283 DVLVPCAL--GGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKG 327 (410)
Q Consensus 283 DvliPaA~--~~~I~~~na~~i~akiIvEgAN~p~t~~A~~iL~~rG 327 (410)
||++=|.- +..++.. . +=.+.+++=|++.|-..|.+..+-.+-
T Consensus 190 DiVitaT~s~~Pl~~~~-~-~~g~hi~~iGs~~p~~~El~~~~~~~a 234 (304)
T PRK07340 190 DLVVTATTSRTPVYPEA-A-RAGRLVVAVGAFTPDMAELAPRTVRGS 234 (304)
T ss_pred CEEEEccCCCCceeCcc-C-CCCCEEEecCCCCCCcccCCHHHHhhC
Confidence 99998874 3456542 2 336789999999997777654444443
No 221
>PRK08605 D-lactate dehydrogenase; Validated
Probab=91.43 E-value=0.29 Score=49.53 Aligned_cols=107 Identities=21% Similarity=0.278 Sum_probs=65.3
Q ss_pred CCCCCCCeEEEEccChHHHHHHHHH-HHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccc
Q 015287 201 GKSISNMKFAIQGFGNVGSWAAKFF-HEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV 279 (410)
Q Consensus 201 g~~l~g~~vaIqGfGnVG~~~a~~L-~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~ 279 (410)
+.+|.|++|.|.|+|++|+.+|+.| ...|.+|++ .|.+.. ... .. .+ .+ ..+.++++
T Consensus 141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~-~d~~~~---------~~~----~~--~~-~~----~~~l~ell- 198 (332)
T PRK08605 141 SRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVA-YDPFPN---------AKA----AT--YV-DY----KDTIEEAV- 198 (332)
T ss_pred cceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEE-ECCCcc---------HhH----Hh--hc-cc----cCCHHHHH-
Confidence 3458999999999999999999999 557889884 454320 000 00 01 01 01233444
Q ss_pred cccceEeecccCCc-----cccccccccc-ceEEEecCCCCC-C-HHHHHHHHhCCce
Q 015287 280 HECDVLVPCALGGV-----LNKENAADVK-AKFIIEAANHPT-D-PEADEILSKKGVV 329 (410)
Q Consensus 280 ~~~DvliPaA~~~~-----I~~~na~~i~-akiIvEgAN~p~-t-~~A~~iL~~rGI~ 329 (410)
.+||+++-|.-.+. ++.+....++ -.+++..+-+.+ + .+..+.|.+..|.
T Consensus 199 ~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ 256 (332)
T PRK08605 199 EGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIK 256 (332)
T ss_pred HhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCee
Confidence 47899998864333 3333333332 348888888884 3 4445677766663
No 222
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.42 E-value=0.57 Score=46.60 Aligned_cols=93 Identities=19% Similarity=0.248 Sum_probs=66.0
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN 260 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~ 260 (410)
.+.|..|+...+ +.+|.+++|++|+|.|- ..||+-++.+|.++++.|. ++.++. + |+++
T Consensus 137 ~PcTp~avi~lL----~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt-ichs~T----~---~l~~-------- 196 (284)
T PRK14170 137 VPCTPAGIIELI----KSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVT-IAHSRT----K---DLPQ-------- 196 (284)
T ss_pred CCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC----C---CHHH--------
Confidence 578988886654 56799999999999995 6799999999999999987 777642 0 1111
Q ss_pred CCcccCCCCeeecCCcccccccceEeeccc-CCcccccccccccceEEEecCC
Q 015287 261 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEAAN 312 (410)
Q Consensus 261 g~v~~~~~~~~i~~~~ll~~~~DvliPaA~-~~~I~~~na~~i~akiIvEgAN 312 (410)
....+||+|-|+. .+.|+.+.... .|-+|=-|-|
T Consensus 197 -----------------~~~~ADIvI~AvG~~~~i~~~~vk~-GavVIDvGin 231 (284)
T PRK14170 197 -----------------VAKEADILVVATGLAKFVKKDYIKP-GAIVIDVGMD 231 (284)
T ss_pred -----------------HHhhCCEEEEecCCcCccCHHHcCC-CCEEEEccCc
Confidence 1346788888774 56777777665 4433333444
No 223
>PLN02858 fructose-bisphosphate aldolase
Probab=91.36 E-value=4.1 Score=48.94 Aligned_cols=170 Identities=16% Similarity=0.172 Sum_probs=94.5
Q ss_pred CCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeee-cCCcccccccce
Q 015287 206 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECDV 284 (410)
Q Consensus 206 g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~Dv 284 (410)
.++|.++|+|++|..+|+.|...|.+|+ +.|.+ .+.+.+.... + +... ++.++ -.+||+
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~-G-------a~~~~s~~e~-~~~aDv 383 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVC-GYDVY----------KPTLVRFENA-G-------GLAGNSPAEV-AKDVDV 383 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHc-C-------CeecCCHHHH-HhcCCE
Confidence 3789999999999999999999999987 55653 2333333322 1 1111 22333 347999
Q ss_pred EeecccC-----Ccccc--cccccc-cceEEEecCCC-C-CCHHHHHHHHh--CCceEecccc------ccccCc--eeh
Q 015287 285 LVPCALG-----GVLNK--ENAADV-KAKFIIEAANH-P-TDPEADEILSK--KGVVILPDIY------ANSGGV--TVS 344 (410)
Q Consensus 285 liPaA~~-----~~I~~--~na~~i-~akiIvEgAN~-p-~t~~A~~iL~~--rGI~v~PD~l------aNaGGV--i~s 344 (410)
++-|--. .++.. .-+..+ .-++|++-... | .+.+..+.+.+ +|+.++=--+ +..|-. +++
T Consensus 384 Vi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvg 463 (1378)
T PLN02858 384 LVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMAS 463 (1378)
T ss_pred EEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEE
Confidence 9977642 22211 112222 23566665543 3 34556677888 9998772222 222221 111
Q ss_pred ----hHHHhhh----ccc-CCC-----CH----HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 015287 345 ----YFEWVQN----IQG-FMW-----EE----EKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTL 395 (410)
Q Consensus 345 ----~~E~~qn----~~~-~~w-----~~----~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~ 395 (410)
.|+.++. +.. .++ -. +-++.-+.......+.+.+..+++.|+++.+...++
T Consensus 464 G~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl 532 (1378)
T PLN02858 464 GTDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDII 532 (1378)
T ss_pred CCHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 2332221 111 111 11 223344444555677888899999999988766543
No 224
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=91.35 E-value=0.4 Score=44.96 Aligned_cols=55 Identities=24% Similarity=0.349 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHH--HHCCCEEEEEECCCC
Q 015287 185 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF--HEHGGKVVAVSDITG 240 (410)
Q Consensus 185 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L--~~~GakvVaVsD~~G 240 (410)
-||=|-+-.+.+.+.+|.+ +-..++|+|.||.|++++.+- .+.|.+|+++-|.+.
T Consensus 64 ~GYnV~~L~~ff~~~Lg~~-~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~ 120 (211)
T COG2344 64 YGYNVKYLRDFFDDLLGQD-KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDP 120 (211)
T ss_pred CCccHHHHHHHHHHHhCCC-cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCH
Confidence 3566666666666677876 446899999999999998544 478999999999863
No 225
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=91.05 E-value=0.76 Score=45.04 Aligned_cols=68 Identities=18% Similarity=0.208 Sum_probs=43.1
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccccccceEe
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 286 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~~Dvli 286 (410)
++|+|+|.|.+|+.++..|.++|.+|+ +.|.+ .+.+.+..+ .+.+... .++.+. -.+||++|
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~-~~d~~----------~~~~~~a~~-~g~~~~~-----~~~~~~-~~~aDlVi 62 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVY-GVSRR----------ESTCERAIE-RGLVDEA-----STDLSL-LKDCDLVI 62 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHHHHH-CCCcccc-----cCCHhH-hcCCCEEE
Confidence 379999999999999999999999887 44553 233333222 2322211 111222 25799999
Q ss_pred ecccCC
Q 015287 287 PCALGG 292 (410)
Q Consensus 287 PaA~~~ 292 (410)
.|.-..
T Consensus 63 lavp~~ 68 (279)
T PRK07417 63 LALPIG 68 (279)
T ss_pred EcCCHH
Confidence 987543
No 226
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=90.99 E-value=0.53 Score=48.33 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=32.4
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 203 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
.+++++|+|.|.|.+|+.+++.|...|.+=+.+.|.+
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3788999999999999999999999998655577865
No 227
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=90.91 E-value=0.38 Score=48.40 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=29.9
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
|+|++|+|+|+|++|+.+|+-|.+.|.+|+...+.
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~ 35 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRK 35 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECc
Confidence 57899999999999999999999999887633343
No 228
>PRK06046 alanine dehydrogenase; Validated
Probab=90.81 E-value=2.4 Score=42.73 Aligned_cols=113 Identities=19% Similarity=0.182 Sum_probs=68.3
Q ss_pred CCCeEEEEccChHHHHHHHHHH-HCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeee-cCCccccccc
Q 015287 205 SNMKFAIQGFGNVGSWAAKFFH-EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHEC 282 (410)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~-~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~ 282 (410)
.-.+++|.|.|..|++.++.|. ..+.+.|.|.|.+ .+...+..++-..-.++ ..... +.+++++ +
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~----------~~~~~~~~~~~~~~~~~-~v~~~~~~~~~l~--a 194 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRT----------KSSAEKFVERMSSVVGC-DVTVAEDIEEACD--C 194 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCC----------HHHHHHHHHHHHhhcCc-eEEEeCCHHHHhh--C
Confidence 4468999999999999998886 4578889888874 23333333221100000 01111 2345554 9
Q ss_pred ceEeeccc--CCcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEe
Q 015287 283 DVLVPCAL--GGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVIL 331 (410)
Q Consensus 283 DvliPaA~--~~~I~~~na~~i~akiIvEgAN~p~t~~A~~iL~~rGI~v~ 331 (410)
||++-|.- +-.+..+..+. .+.+..=|++-|-..|.+..+-++.-+|+
T Consensus 195 DiVv~aTps~~P~~~~~~l~~-g~hV~~iGs~~p~~~El~~~~~~~a~vvv 244 (326)
T PRK06046 195 DILVTTTPSRKPVVKAEWIKE-GTHINAIGADAPGKQELDPEILLRAKVVV 244 (326)
T ss_pred CEEEEecCCCCcEecHHHcCC-CCEEEecCCCCCccccCCHHHHhCCcEEE
Confidence 99998764 23455555543 66788889999866666544444553333
No 229
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=90.71 E-value=2.3 Score=43.24 Aligned_cols=33 Identities=21% Similarity=0.446 Sum_probs=29.1
Q ss_pred CeEEEEccChHHHHHHHHHHH-CCCEEEEEECCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDIT 239 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~~ 239 (410)
.||+|.|||.+|+.+++.+.+ .+.++++|+|++
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~ 35 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTK 35 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 489999999999999998874 579999999964
No 230
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=90.48 E-value=0.3 Score=48.08 Aligned_cols=32 Identities=28% Similarity=0.316 Sum_probs=28.4
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
++|+|.|.|++|+.+|..|...|..|+ +.|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~-~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVW-LLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEE-EEeCC
Confidence 589999999999999999999999987 56654
No 231
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=90.40 E-value=0.83 Score=47.30 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=31.7
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
|+..+|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 677899999999999999999999998666688854
No 232
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=90.31 E-value=1.2 Score=34.92 Aligned_cols=42 Identities=24% Similarity=0.311 Sum_probs=34.8
Q ss_pred eEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHH
Q 015287 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPA 252 (410)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~ 252 (410)
+|+|+|.|.+|-.+|..|.+.|.+|. +.+.+..+. ..+|.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vt-li~~~~~~~--~~~~~~~ 42 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVT-LIERSDRLL--PGFDPDA 42 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEE-EEESSSSSS--TTSSHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEE-EEeccchhh--hhcCHHH
Confidence 68999999999999999999999997 777766665 5566544
No 233
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=90.26 E-value=0.4 Score=40.98 Aligned_cols=42 Identities=26% Similarity=0.378 Sum_probs=31.1
Q ss_pred eEEEEc-cChHHHHHHHHHHHC-CCEEEEEECCCCceeCCCCCCHHHH
Q 015287 208 KFAIQG-FGNVGSWAAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPAL 253 (410)
Q Consensus 208 ~vaIqG-fGnVG~~~a~~L~~~-GakvVaVsD~~G~i~~~~GlDi~~l 253 (410)
||+|.| .|.+|+.++++|.++ ...++.+..++. ..|..+...
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~----~~g~~~~~~ 44 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR----SAGKPLSEV 44 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT----TTTSBHHHT
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc----ccCCeeehh
Confidence 689999 999999999999874 467777777652 245554443
No 234
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.23 E-value=1 Score=44.74 Aligned_cols=53 Identities=11% Similarity=0.104 Sum_probs=44.5
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHH--CCCEEEEEECCC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHE--HGGKVVAVSDIT 239 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~--~GakvVaVsD~~ 239 (410)
.++|..|+...+ ++++.+++|++++|.| ...||.-++.+|.+ +++.|. ++.++
T Consensus 138 ~PcTp~av~~ll----~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVt-vchs~ 193 (284)
T PRK14193 138 LPCTPRGIVHLL----RRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVT-LCHTG 193 (284)
T ss_pred CCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEE-EeCCC
Confidence 478999987665 4678999999999999 57899999999988 788886 77763
No 235
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.06 E-value=1.2 Score=43.69 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=28.5
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
++|+|.|.|.+|..+|..|...|..|+ +.|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~-l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVL-LNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEE-EEeCC
Confidence 589999999999999999999999988 66653
No 236
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.93 E-value=1.3 Score=45.85 Aligned_cols=121 Identities=19% Similarity=0.239 Sum_probs=66.7
Q ss_pred HHHHHHHhCC-CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCee
Q 015287 193 TEALLAEHGK-SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNA 271 (410)
Q Consensus 193 ~~~~~~~~g~-~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~ 271 (410)
++.+.+.++. .+..+++.|.|+|.+|+.+++.|.+.|..|+ +.|.+ .+.+.++.++...+.-+.+ ..
T Consensus 217 l~~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~-vid~~----------~~~~~~~~~~~~~~~~i~g-d~ 284 (453)
T PRK09496 217 IRAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKEGYSVK-LIERD----------PERAEELAEELPNTLVLHG-DG 284 (453)
T ss_pred HHHHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhCCCeEE-EEECC----------HHHHHHHHHHCCCCeEEEC-CC
Confidence 3444444443 3667899999999999999999999999998 55653 3444444433211110101 11
Q ss_pred ecCCcc---cccccceEeecccCCc---cccccccccc-ceEEEecCCCCCCHHHHHHHHhCCce
Q 015287 272 MDLNDL---LVHECDVLVPCALGGV---LNKENAADVK-AKFIIEAANHPTDPEADEILSKKGVV 329 (410)
Q Consensus 272 i~~~~l---l~~~~DvliPaA~~~~---I~~~na~~i~-akiIvEgAN~p~t~~A~~iL~~rGI~ 329 (410)
.+.+.+ --.++|.++-+.-... +....++.++ .++|+... +++-.++|+..|+-
T Consensus 285 ~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~~~~----~~~~~~~~~~~g~~ 345 (453)
T PRK09496 285 TDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKKVIALVN----RPAYVDLVEGLGID 345 (453)
T ss_pred CCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCCeEEEEEC----CcchHHHHHhcCCC
Confidence 112222 1246788876543222 2122233332 35777653 34455778888874
No 237
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=89.91 E-value=0.48 Score=44.51 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=31.5
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
|+.++|+|.|.|.+|+.+|+.|...|..=+.+.|.+
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 788999999999999999999999998534488865
No 238
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.85 E-value=0.55 Score=49.41 Aligned_cols=40 Identities=25% Similarity=0.322 Sum_probs=34.6
Q ss_pred HhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 199 EHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 199 ~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
.++.++++++|.|.|.|..|..+|+.|.++|.+|+ ++|.+
T Consensus 9 ~~~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~-~~d~~ 48 (480)
T PRK01438 9 SWHSDWQGLRVVVAGLGVSGFAAADALLELGARVT-VVDDG 48 (480)
T ss_pred hcccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 45667889999999999999999999999999977 67753
No 239
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=89.84 E-value=0.65 Score=43.76 Aligned_cols=53 Identities=26% Similarity=0.290 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHH--HHCCCEEEEEECCC
Q 015287 186 GLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF--HEHGGKVVAVSDIT 239 (410)
Q Consensus 186 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L--~~~GakvVaVsD~~ 239 (410)
||=|...++.+=+.++.. ...+|+|.|.|++|..+++.+ .+.|.+++|+.|.+
T Consensus 65 gy~v~~l~~~~~~~l~~~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d 119 (213)
T PRK05472 65 GYNVEELLEFIEKILGLD-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD 119 (213)
T ss_pred CeeHHHHHHHHHHHhCCC-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence 455555555444455665 557999999999999999864 35789999999874
No 240
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.81 E-value=0.46 Score=50.22 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=32.3
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
++|++|+|.|+|.-|..++++|.+.|++|+ ++|.+
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~-~~d~~ 40 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQA-LTLFC 40 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEE-EEcCC
Confidence 568999999999999999999999999998 78865
No 241
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=89.79 E-value=0.54 Score=48.42 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=31.7
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
|+..+|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 678899999999999999999999997555588865
No 242
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.69 E-value=1.1 Score=44.75 Aligned_cols=53 Identities=25% Similarity=0.197 Sum_probs=44.0
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHH----CCCEEEEEECCC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHE----HGGKVVAVSDIT 239 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~----~GakvVaVsD~~ 239 (410)
.++|..|+... +++++.+++|++++|.|= ..||+-++.+|.+ +++.|. +++++
T Consensus 137 ~PcTp~av~~l----L~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt-~~hs~ 194 (286)
T PRK14184 137 RPCTPAGVMTL----LERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVT-VCHSR 194 (286)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEE-EEeCC
Confidence 47899888655 456789999999999994 7799999999998 789887 66654
No 243
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=89.66 E-value=1.9 Score=43.64 Aligned_cols=34 Identities=32% Similarity=0.387 Sum_probs=30.4
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
....+|+|.|.|-||.++|++..-.|++|. |-|.
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vt-ild~ 199 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVT-ILDL 199 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeE-EEec
Confidence 556789999999999999999999999997 7775
No 244
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.63 E-value=0.36 Score=41.91 Aligned_cols=34 Identities=32% Similarity=0.347 Sum_probs=29.1
Q ss_pred CCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 206 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 206 g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
.+||+|.|.|.+|+.+++.|...|..-+.+.|.+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 5799999999999999999999998655588864
No 245
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=89.60 E-value=0.48 Score=48.19 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=32.9
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 203 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
.|+.++|.|.|.|.+|+.+|+.|...|..-+.+.|.+
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 3788999999999999999999999998666688875
No 246
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.51 E-value=0.58 Score=48.61 Aligned_cols=36 Identities=33% Similarity=0.454 Sum_probs=32.2
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 203 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
+++++++.|.|.|..|..+|++|++.|++|+ ++|.+
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~-~~d~~ 37 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVT-VNDGK 37 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEE-EEcCC
Confidence 3678999999999999999999999999988 67864
No 247
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=89.49 E-value=0.42 Score=51.25 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=29.0
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
++|+|+|.|.+|+.+|..|...|..|+ +-|.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~-l~D~~ 39 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVL-LYDAR 39 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEE-EEeCC
Confidence 579999999999999999999999998 77764
No 248
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=89.47 E-value=8 Score=37.90 Aligned_cols=113 Identities=12% Similarity=0.156 Sum_probs=64.9
Q ss_pred CeEEEEccChHHHHHHHHHHHCC----CEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCee-ecCCcccccc
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHG----GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNA-MDLNDLLVHE 281 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G----akvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~-i~~~~ll~~~ 281 (410)
.+|.|.|+|++|+.+++.|.+.| .+|+.++.+. .+.+...... ++.... .+..+++ .+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~----------~~~~~~l~~~------~~~~~~~~~~~e~~-~~ 64 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSK----------NEHFNQLYDK------YPTVELADNEAEIF-TK 64 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCc----------HHHHHHHHHH------cCCeEEeCCHHHHH-hh
Confidence 47999999999999999999888 5677443321 1222222221 111111 1223333 48
Q ss_pred cceEeecccCCcccccccc----ccc-ceEEEecCCCCCCHHHHHHHHh-CCceEecccccc
Q 015287 282 CDVLVPCALGGVLNKENAA----DVK-AKFIIEAANHPTDPEADEILSK-KGVVILPDIYAN 337 (410)
Q Consensus 282 ~DvliPaA~~~~I~~~na~----~i~-akiIvEgAN~p~t~~A~~iL~~-rGI~v~PD~laN 337 (410)
+|++|.|.-...+. +-+. .++ -++|+--+|+-...+..+.|.. +=|.++|-.-+-
T Consensus 65 aDvVilavpp~~~~-~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~~~vvR~MPN~~~~ 125 (277)
T PRK06928 65 CDHSFICVPPLAVL-PLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQVSRLIPSLTSA 125 (277)
T ss_pred CCEEEEecCHHHHH-HHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCEEEEeCccHHH
Confidence 99999886543322 2222 222 2477778888666677777643 334677765443
No 249
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=89.47 E-value=0.31 Score=49.50 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=32.3
Q ss_pred hCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEE
Q 015287 200 HGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVA 234 (410)
Q Consensus 200 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVa 234 (410)
+|.++.|+|++|.|||.+|+.+|+.+...|.++|+
T Consensus 140 ~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~ 174 (406)
T KOG0068|consen 140 LGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIG 174 (406)
T ss_pred eeeEEeccEEEEeecccchHHHHHHHHhcCceEEe
Confidence 35679999999999999999999999999999995
No 250
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=89.29 E-value=9.3 Score=37.67 Aligned_cols=123 Identities=13% Similarity=0.138 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcc
Q 015287 185 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLN 264 (410)
Q Consensus 185 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~ 264 (410)
=++|+..+++. .+.+ .++++.|.|.|..++.++..|.+.|++-|.|.+.+ .+...+..+.-+ .
T Consensus 106 D~~Gf~~~L~~----~~~~-~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~----------~~~a~~la~~~~--~ 168 (272)
T PRK12550 106 DYIAIAKLLAS----YQVP-PDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARN----------EKTGKALAELYG--Y 168 (272)
T ss_pred CHHHHHHHHHh----cCCC-CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC----------HHHHHHHHHHhC--C
Confidence 45677766653 3554 35699999999999999999999998655588774 233333322211 0
Q ss_pred cCCCCeeecCCcccccccceEeecccCCccccc-------ccccc-cceEEEecCCCCCCHHHHHHHHhCCceEe
Q 015287 265 DFQGGNAMDLNDLLVHECDVLVPCALGGVLNKE-------NAADV-KAKFIIEAANHPTDPEADEILSKKGVVIL 331 (410)
Q Consensus 265 ~~~~~~~i~~~~ll~~~~DvliPaA~~~~I~~~-------na~~i-~akiIvEgAN~p~t~~A~~iL~~rGI~v~ 331 (410)
.+ . +++....+|++|=|.--+.-... ....+ +..+|.+-.-+|....--+.-+++|..++
T Consensus 169 ~~------~-~~~~~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~i 236 (272)
T PRK12550 169 EW------R-PDLGGIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVFDVVALPAETPLIRYARARGKTVI 236 (272)
T ss_pred cc------h-hhcccccCCEEEECCccccCCCCccccCCCCHHHcCCCCEEEEeecCCccCHHHHHHHHCcCeEe
Confidence 11 0 11222458999987632221111 01112 23578888888853334455667777654
No 251
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=89.17 E-value=0.37 Score=49.23 Aligned_cols=112 Identities=22% Similarity=0.333 Sum_probs=61.0
Q ss_pred EEEEccChHHHHHHHHHHHCCC--EEEEEECCCCceeCCCCCCHHHHHHHHHh--CCCcccCCCCeeec---CCccc--c
Q 015287 209 FAIQGFGNVGSWAAKFFHEHGG--KVVAVSDITGAIKNPNGIDVPALLKYKKS--NKSLNDFQGGNAMD---LNDLL--V 279 (410)
Q Consensus 209 vaIqGfGnVG~~~a~~L~~~Ga--kvVaVsD~~G~i~~~~GlDi~~l~~~~~~--~g~v~~~~~~~~i~---~~~ll--~ 279 (410)
|.|.|.|.||+.+++.|.+..- +|+ |+|.+ .+.+.+..++ ...+.. ..++ .+++- -
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~-va~r~----------~~~~~~~~~~~~~~~~~~----~~~d~~~~~~l~~~~ 65 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVT-VADRN----------PEKAERLAEKLLGDRVEA----VQVDVNDPESLAELL 65 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEE-EEESS----------HHHHHHHHT--TTTTEEE----EE--TTTHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEE-EEECC----------HHHHHHHHhhccccceeE----EEEecCCHHHHHHHH
Confidence 6789999999999999998774 565 88874 5566555543 111110 1122 12222 3
Q ss_pred cccceEeecccCCccccccccc---ccceEEEecCCCCCC---HHHHHHHHhCCceEecccccccc
Q 015287 280 HECDVLVPCALGGVLNKENAAD---VKAKFIIEAANHPTD---PEADEILSKKGVVILPDIYANSG 339 (410)
Q Consensus 280 ~~~DvliPaA~~~~I~~~na~~---i~akiIvEgAN~p~t---~~A~~iL~~rGI~v~PD~laNaG 339 (410)
.+||++|-|+... .+..-++. .++.+|= -+. .+ .+-++..+++|+.++++.=.+.|
T Consensus 66 ~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD-~~~--~~~~~~~l~~~a~~~g~~~l~~~G~~PG 127 (386)
T PF03435_consen 66 RGCDVVINCAGPF-FGEPVARACIEAGVHYVD-TSY--VTEEMLALDEEAKEAGVTALPGCGFDPG 127 (386)
T ss_dssp TTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEE-SS---HHHHHHHCHHHHHHTTSEEE-S-BTTTB
T ss_pred hcCCEEEECCccc-hhHHHHHHHHHhCCCeec-cch--hHHHHHHHHHHHHhhCCEEEeCcccccc
Confidence 4889999998554 44333322 3566654 111 12 22245677899999887655554
No 252
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=89.11 E-value=0.4 Score=51.33 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=28.9
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
++|+|+|.|.+|+.+|..|...|..|+ +-|.+
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~-l~d~~ 37 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVL-LYDIR 37 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEE-EEeCC
Confidence 579999999999999999999999998 66764
No 253
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=89.07 E-value=0.55 Score=46.32 Aligned_cols=36 Identities=28% Similarity=0.605 Sum_probs=31.0
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
|++.+|+|.|.|.||+++|+.|.+.|..=+.+.|.+
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 788999999999999999999999995444477765
No 254
>PLN02712 arogenate dehydrogenase
Probab=89.01 E-value=0.7 Score=51.23 Aligned_cols=38 Identities=34% Similarity=0.462 Sum_probs=32.9
Q ss_pred hCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECC
Q 015287 200 HGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 200 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
.+.++++++|+|+|+|++|+.+|+.|.+.|.+|+ +.|.
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~-~~dr 400 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVL-AYSR 400 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEE-EEEC
Confidence 4567889999999999999999999999999988 4454
No 255
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=88.84 E-value=1.3 Score=44.60 Aligned_cols=110 Identities=19% Similarity=0.226 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCC-
Q 015287 184 ATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNK- 261 (410)
Q Consensus 184 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g- 261 (410)
+||.-.++++. +.|..-.|.+|.|.+. |.||+-+.++-.-+|++||+++-+. ++..-.++.-|
T Consensus 133 mpG~TAY~gLl----~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~-----------eK~~~l~~~lGf 197 (340)
T COG2130 133 MPGLTAYFGLL----DIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGA-----------EKCDFLTEELGF 197 (340)
T ss_pred CchHHHHHHHH----HhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCH-----------HHHHHHHHhcCC
Confidence 44444445443 4466667999999995 9999998888878999999998873 22211111111
Q ss_pred -CcccCCCCeeecCCcccc----cccceEeecccCCccccc-ccccccceEEEecC
Q 015287 262 -SLNDFQGGNAMDLNDLLV----HECDVLVPCALGGVLNKE-NAADVKAKFIIEAA 311 (410)
Q Consensus 262 -~v~~~~~~~~i~~~~ll~----~~~DvliPaA~~~~I~~~-na~~i~akiIvEgA 311 (410)
..-+|... +-.+-|. --.||++.+-.+.+.++- +--+.+||+++-|+
T Consensus 198 D~~idyk~~---d~~~~L~~a~P~GIDvyfeNVGg~v~DAv~~~ln~~aRi~~CG~ 250 (340)
T COG2130 198 DAGIDYKAE---DFAQALKEACPKGIDVYFENVGGEVLDAVLPLLNLFARIPVCGA 250 (340)
T ss_pred ceeeecCcc---cHHHHHHHHCCCCeEEEEEcCCchHHHHHHHhhccccceeeeee
Confidence 11122111 1112222 246999999766665542 11224889888887
No 256
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=88.75 E-value=0.62 Score=44.38 Aligned_cols=37 Identities=24% Similarity=0.382 Sum_probs=32.5
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 203 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
.|+..+|.|.|.|.+|+.+|+.|...|..-+.+.|.+
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 3778999999999999999999999998666688864
No 257
>PRK05717 oxidoreductase; Validated
Probab=88.68 E-value=0.85 Score=43.19 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=31.4
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 202 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 202 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
.+++|+++.|.|. |.+|+++|+.|.++|++|+ +.|.
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~-~~~~ 42 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVV-LADL 42 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEE-EEcC
Confidence 4588999999995 9999999999999999998 4554
No 258
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.65 E-value=1.2 Score=44.49 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=43.1
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHH----CCCEEEEEECCC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHE----HGGKVVAVSDIT 239 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~----~GakvVaVsD~~ 239 (410)
.++|..|+. ++++.++.+++|++|+|.|= ..||+-++.+|.+ +++.|. ++.++
T Consensus 139 ~PcTp~ail----~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt-~~hs~ 196 (295)
T PRK14174 139 VSCTPYGIL----ELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVT-ICHSA 196 (295)
T ss_pred CCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEE-EEeCC
Confidence 578999874 45567789999999999994 7799999999987 688876 66653
No 259
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=88.64 E-value=0.98 Score=44.24 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=38.1
Q ss_pred CCCeEEEEccChHHHHHHHHHHHC------C---CEEEEEECCCCceeC----CCCCCHHHHHHHHHhCC
Q 015287 205 SNMKFAIQGFGNVGSWAAKFFHEH------G---GKVVAVSDITGAIKN----PNGIDVPALLKYKKSNK 261 (410)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~------G---akvVaVsD~~G~i~~----~~GlDi~~l~~~~~~~g 261 (410)
+...|++.|.|+||+++...+... + .+||+|||+.+.+.. |.-|+-+..-++.++++
T Consensus 2 k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~st~ 71 (364)
T KOG0455|consen 2 KKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIKSTG 71 (364)
T ss_pred ccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHHHHHHhcC
Confidence 345799999999999998766422 2 489999999887643 33343333334555544
No 260
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=88.58 E-value=1.8 Score=38.67 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=26.3
Q ss_pred eEEEEccChHHHHHHHHHHHCCCEEEEEECC
Q 015287 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+|+|.|.|+.|..+|..|.++|.+|. +-+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~-l~~~ 30 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVT-LWGR 30 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEE-EETS
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEE-EEec
Confidence 68999999999999999999998876 5444
No 261
>PRK11579 putative oxidoreductase; Provisional
Probab=88.42 E-value=3 Score=42.03 Aligned_cols=102 Identities=17% Similarity=0.259 Sum_probs=60.9
Q ss_pred CeEEEEccChHHH-HHHHHHHH-CCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCe-eecCCcccc-ccc
Q 015287 207 MKFAIQGFGNVGS-WAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGN-AMDLNDLLV-HEC 282 (410)
Q Consensus 207 ~~vaIqGfGnVG~-~~a~~L~~-~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~-~i~~~~ll~-~~~ 282 (410)
.||+|+|+|.+|. +.+..+.. .++++++|+|.+. +... + .|++.. .-+.++++. .++
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~----------~~~~---~------~~~~~~~~~~~~ell~~~~v 65 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDA----------TKVK---A------DWPTVTVVSEPQHLFNDPNI 65 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCH----------HHHH---h------hCCCCceeCCHHHHhcCCCC
Confidence 6899999999997 45666654 4799999999752 2221 1 122211 123456775 478
Q ss_pred ceEeecccCCccccccccc-c--cceEEEecCCCCC--C-HHHHHH---HHhCCceEe
Q 015287 283 DVLVPCALGGVLNKENAAD-V--KAKFIIEAANHPT--D-PEADEI---LSKKGVVIL 331 (410)
Q Consensus 283 DvliPaA~~~~I~~~na~~-i--~akiIvEgAN~p~--t-~~A~~i---L~~rGI~v~ 331 (410)
|+++-|. ++..+.+-+.. + +..++||= |+ | .+++++ .+++|+.+.
T Consensus 66 D~V~I~t-p~~~H~~~~~~al~aGkhVl~EK---Pla~t~~ea~~l~~~a~~~g~~l~ 119 (346)
T PRK11579 66 DLIVIPT-PNDTHFPLAKAALEAGKHVVVDK---PFTVTLSQARELDALAKSAGRVLS 119 (346)
T ss_pred CEEEEcC-CcHHHHHHHHHHHHCCCeEEEeC---CCCCCHHHHHHHHHHHHHhCCEEE
Confidence 9888774 44445544433 2 44677763 42 2 344443 466777654
No 262
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.35 E-value=0.46 Score=47.00 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=28.5
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
.+|+|.|.|.+|+..|..|...|.+|+ +-|.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~-l~d~~ 37 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVL-VFETT 37 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEE-EEECC
Confidence 389999999999999999999999998 66653
No 263
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.25 E-value=1.4 Score=43.82 Aligned_cols=53 Identities=17% Similarity=0.102 Sum_probs=43.9
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHC----CCEEEEEECCC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEH----GGKVVAVSDIT 239 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~----GakvVaVsD~~ 239 (410)
.+.|..|+...+ ++++.+++|++|+|.|= ..||+-++.+|.++ ++.|. ++.++
T Consensus 133 ~PcTp~avi~lL----~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVt-vchs~ 190 (287)
T PRK14181 133 IPCTPAGIIELL----KYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVT-LLHSQ 190 (287)
T ss_pred CCCCHHHHHHHH----HHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEE-EeCCC
Confidence 478999887654 56689999999999995 77999999999988 78876 77663
No 264
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=88.24 E-value=0.51 Score=45.93 Aligned_cols=36 Identities=25% Similarity=0.551 Sum_probs=30.5
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
|+..+|+|.|.|.||+|+++.|.+.|..=+.+.|-+
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D 63 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMD 63 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecc
Confidence 678899999999999999999999997544466654
No 265
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.22 E-value=0.78 Score=47.71 Aligned_cols=36 Identities=31% Similarity=0.463 Sum_probs=32.3
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 203 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
++++++|.|.|.|.+|..+|+.|.+.|++|+ ++|.+
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~-~~d~~ 37 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVI-LTDEK 37 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 4688999999999999999999999999988 66764
No 266
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=88.05 E-value=1 Score=45.15 Aligned_cols=172 Identities=19% Similarity=0.207 Sum_probs=97.9
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccccccc
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECD 283 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~~D 283 (410)
....+|.-+|.|++|++.+.-|.+.|++|+ |-|. +.+...++.+.+.++.+- |.|+ ..+||
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVt-V~dr----------~~~k~~~f~~~Ga~v~~s-------PaeV-ae~sD 93 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVT-VYDR----------TKDKCKEFQEAGARVANS-------PAEV-AEDSD 93 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEE-EEeC----------cHHHHHHHHHhchhhhCC-------HHHH-HhhcC
Confidence 456899999999999999999999999998 7664 467777777776666543 3333 34677
Q ss_pred eEeecccCCc------ccccccccc-----cceEEEecCCC-C-CCHHHHHHHHhCCceEeccccccccCcee-------
Q 015287 284 VLVPCALGGV------LNKENAADV-----KAKFIIEAANH-P-TDPEADEILSKKGVVILPDIYANSGGVTV------- 343 (410)
Q Consensus 284 vliPaA~~~~------I~~~na~~i-----~akiIvEgAN~-p-~t~~A~~iL~~rGI~v~PD~laNaGGVi~------- 343 (410)
++|-|- ++. +...+- -+ ..+..++..-- | ++.|..+.+..+|-.++=--+ +||+--
T Consensus 94 vvitmv-~~~~~v~~v~~g~~G-vl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPV--SGg~~~A~~G~Lt 169 (327)
T KOG0409|consen 94 VVITMV-PNPKDVKDVLLGKSG-VLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPV--SGGVKGAEEGTLT 169 (327)
T ss_pred EEEEEc-CChHhhHHHhcCCCc-ceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccc--cCCchhhhcCeEE
Confidence 777552 221 111110 01 11221333221 2 234445567777776653222 444421
Q ss_pred -------hhHHHhhhcc---c----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 015287 344 -------SYFEWVQNIQ---G----------FMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVN 398 (410)
Q Consensus 344 -------s~~E~~qn~~---~----------~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~ 398 (410)
+-|||.+..- + ..-...-+++.+-...--.+.|-+..+++.+++.++=+.++-.-
T Consensus 170 imagGde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G 244 (327)
T KOG0409|consen 170 IMAGGDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTG 244 (327)
T ss_pred EEecCcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 3455553321 0 00012234444444444566777788888888888776665443
No 267
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.94 E-value=0.64 Score=45.67 Aligned_cols=32 Identities=31% Similarity=0.325 Sum_probs=28.0
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
++|+|.|.|.+|+.+|..|.+.|.+|+ +.|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~-l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVT-IYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEE-EEeCC
Confidence 489999999999999999999999987 55653
No 268
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.77 E-value=1.4 Score=45.77 Aligned_cols=31 Identities=32% Similarity=0.369 Sum_probs=27.4
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
++|+|.|+|++|+.+++.|.+.|..|+. .|.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~v-id~ 31 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTV-IDT 31 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEE-EEC
Confidence 4799999999999999999999999984 454
No 269
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=87.75 E-value=1.3 Score=44.45 Aligned_cols=34 Identities=32% Similarity=0.375 Sum_probs=28.5
Q ss_pred CCCeEEEEccChHHHHHHHHHHHCCC--EEEEEECCC
Q 015287 205 SNMKFAIQGFGNVGSWAAKFFHEHGG--KVVAVSDIT 239 (410)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~Ga--kvVaVsD~~ 239 (410)
++++|+|+|.|+||+.+|..|...|. .++ +.|.+
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~-L~D~~ 40 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELV-IIDIN 40 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEE-EEeCC
Confidence 56799999999999999999988886 454 77764
No 270
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.64 E-value=0.53 Score=47.50 Aligned_cols=47 Identities=26% Similarity=0.355 Sum_probs=36.3
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCC-EEEEE
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAV 235 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kvVaV 235 (410)
.-.||||.+.-+. .. -+|.+|+|.|+|.||..+++-....|| ||+||
T Consensus 176 GvsTG~GAa~~~A------kv-~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgv 223 (375)
T KOG0022|consen 176 GVSTGYGAAWNTA------KV-EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGV 223 (375)
T ss_pred cccccchhhhhhc------cc-CCCCEEEEEecchHHHHHHHhHHhcCcccEEEE
Confidence 4579999643221 12 378999999999999999998888886 88876
No 271
>PLN02858 fructose-bisphosphate aldolase
Probab=87.59 E-value=2.2 Score=51.12 Aligned_cols=172 Identities=13% Similarity=0.092 Sum_probs=99.5
Q ss_pred CCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeee-cCCcccccccc
Q 015287 205 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECD 283 (410)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~D 283 (410)
...+|.++|+|++|+.+|+.|.+.|..|. |-|.+ .+...+..+.+ +... ++.++. .+||
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~-v~dr~----------~~~~~~l~~~G--------a~~~~s~~e~a-~~ad 62 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQ-AFEIS----------TPLMEKFCELG--------GHRCDSPAEAA-KDAA 62 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEE-EEcCC----------HHHHHHHHHcC--------CeecCCHHHHH-hcCC
Confidence 35689999999999999999999999987 55653 34444444332 2211 233333 4789
Q ss_pred eEeecccCCcccccc-------cccc-cceEEEecC-CCC-CCHHHHHHHHhCC--ceEecccc------ccccCce--e
Q 015287 284 VLVPCALGGVLNKEN-------AADV-KAKFIIEAA-NHP-TDPEADEILSKKG--VVILPDIY------ANSGGVT--V 343 (410)
Q Consensus 284 vliPaA~~~~I~~~n-------a~~i-~akiIvEgA-N~p-~t~~A~~iL~~rG--I~v~PD~l------aNaGGVi--~ 343 (410)
++|-|........+. +..+ .-++|++-. ..| .+.+..+.+.++| +.++=--+ +.+|-++ +
T Consensus 63 vVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imv 142 (1378)
T PLN02858 63 ALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIA 142 (1378)
T ss_pred EEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEE
Confidence 999886433222211 2222 235667655 444 4566778899999 87662111 2223322 1
Q ss_pred ----hhHHHhhh----ccc-CCC-----C----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 015287 344 ----SYFEWVQN----IQG-FMW-----E----EEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLG 396 (410)
Q Consensus 344 ----s~~E~~qn----~~~-~~w-----~----~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A 396 (410)
..+|-++. ... .++ - -.-++.-+...+..++.+-+..+++.|+++.....++.
T Consensus 143 GG~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~ 213 (1378)
T PLN02858 143 SGRSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIIS 213 (1378)
T ss_pred cCCHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 11222221 111 111 1 12345555555557788888999999999887766653
No 272
>PRK08618 ornithine cyclodeaminase; Validated
Probab=87.52 E-value=4.9 Score=40.41 Aligned_cols=115 Identities=11% Similarity=0.097 Sum_probs=65.9
Q ss_pred CCCeEEEEccChHHHHHHHHHH-HCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCC-CeeecC-Ccccccc
Q 015287 205 SNMKFAIQGFGNVGSWAAKFFH-EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQG-GNAMDL-NDLLVHE 281 (410)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~-~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~-~~~i~~-~~ll~~~ 281 (410)
..++++|.|.|..|+..++.+. ..+.+-|.|.|.+ .+...+..++-. ..++. ....++ ++.+ .+
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~----------~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~-~~ 192 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT----------FEKAYAFAQEIQ--SKFNTEIYVVNSADEAI-EE 192 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC----------HHHHHHHHHHHH--HhcCCcEEEeCCHHHHH-hc
Confidence 5679999999999998887764 4688888888874 233332222100 00110 111222 3333 48
Q ss_pred cceEeeccc--CCcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEeccc
Q 015287 282 CDVLVPCAL--GGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDI 334 (410)
Q Consensus 282 ~DvliPaA~--~~~I~~~na~~i~akiIvEgAN~p~t~~A~~iL~~rGI~v~PD~ 334 (410)
+||++-|.- .-.|+ +-++ -.+.+++=|++.|--.|.+..+-++.-.++-|.
T Consensus 193 aDiVi~aT~s~~p~i~-~~l~-~G~hV~~iGs~~p~~~E~~~~~~~~a~~vvvD~ 245 (325)
T PRK08618 193 ADIIVTVTNAKTPVFS-EKLK-KGVHINAVGSFMPDMQELPSEAIARANKVVVES 245 (325)
T ss_pred CCEEEEccCCCCcchH-HhcC-CCcEEEecCCCCcccccCCHHHHhhCCEEEECC
Confidence 999997764 33454 3333 377888899998865554433333433333343
No 273
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=87.42 E-value=2 Score=42.43 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=27.6
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
++|+|.|.|++|+.++..|++.|..|. +.|.+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~-~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVT-LWARD 33 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEE-EEECC
Confidence 479999999999999999999999875 55653
No 274
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=87.37 E-value=2.5 Score=43.39 Aligned_cols=32 Identities=34% Similarity=0.569 Sum_probs=28.3
Q ss_pred CeEEEEccChHHHHHHHHHHHC-----CCEEEEEECC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEH-----GGKVVAVSDI 238 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~-----GakvVaVsD~ 238 (410)
.||+|-|||.+|+.+.|.+.+. ...||||-|.
T Consensus 4 ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~ 40 (361)
T PTZ00434 4 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDM 40 (361)
T ss_pred eEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCC
Confidence 5899999999999999998764 5799999984
No 275
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=87.34 E-value=3.1 Score=44.33 Aligned_cols=32 Identities=31% Similarity=0.324 Sum_probs=27.6
Q ss_pred CeEEEEccChHHHHHHHHHHHCC--CEEEEEECCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHG--GKVVAVSDIT 239 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G--akvVaVsD~~ 239 (410)
++|+|.|.|.||..+|-.|+++| .+|+++ |.+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gv-D~~ 35 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVV-DIS 35 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEE-ECC
Confidence 68999999999999999999884 789866 643
No 276
>PRK06153 hypothetical protein; Provisional
Probab=87.26 E-value=0.39 Score=49.72 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=31.7
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 203 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
.|++.+|+|.|.|.+|+.+++.|.+.|.+=+.+.|.+
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 3788999999999999999999999997545477764
No 277
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=87.25 E-value=1.7 Score=37.22 Aligned_cols=100 Identities=20% Similarity=0.348 Sum_probs=54.5
Q ss_pred CeEEEEc----cChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCccccccc
Q 015287 207 MKFAIQG----FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHEC 282 (410)
Q Consensus 207 ~~vaIqG----fGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~~ 282 (410)
++|+|.| -++.|..+.+.|.++|.+|+.|.-..+.+. .+.-|+. + +|+ -.++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~------------------G~~~y~s---l--~e~-p~~i 56 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL------------------GIKCYPS---L--AEI-PEPI 56 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET------------------TEE-BSS---G--GGC-SST-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC------------------cEEeecc---c--cCC-CCCC
Confidence 5899999 599999999999999999998744332111 1111211 1 221 4567
Q ss_pred ceEeecccCC----cccccccccccceEEEecCCCCCCHHHHHHHHhCCceEe-cc
Q 015287 283 DVLVPCALGG----VLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVIL-PD 333 (410)
Q Consensus 283 DvliPaA~~~----~I~~~na~~i~akiIvEgAN~p~t~~A~~iL~~rGI~v~-PD 333 (410)
|+.+-|.-.. .+.+--+..+++=++.-| ..++++.+.+++.|+.++ |.
T Consensus 57 Dlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~vigp~ 109 (116)
T PF13380_consen 57 DLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG---AESEELIEAAREAGIRVIGPN 109 (116)
T ss_dssp SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EEEESS
T ss_pred CEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEEEeCC
Confidence 7777664222 222221222343344444 457889999999999987 64
No 278
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=87.20 E-value=0.82 Score=46.12 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=30.3
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCC-EEEEEECCCCc
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDITGA 241 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kvVaVsD~~G~ 241 (410)
++.++|+|+|.|+||+.+|..+...|. . |.+-|.+..
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi~~~ 41 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDIVKN 41 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeCCCc
Confidence 345799999999999999999988885 7 458887543
No 279
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=87.19 E-value=4.8 Score=42.97 Aligned_cols=32 Identities=38% Similarity=0.228 Sum_probs=28.4
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
++|+|+|.|++|+..|..|...|.+|+ +.|.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~-v~D~~ 36 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVA-VFDPH 36 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEE-EEeCC
Confidence 489999999999999999999999987 66663
No 280
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.15 E-value=0.9 Score=47.74 Aligned_cols=35 Identities=34% Similarity=0.378 Sum_probs=31.8
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
+.+++|.|.|+|.-|..+|++|.+.|++|. ++|.+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~-~~D~~ 46 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVT-AFDKK 46 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEE-EECCC
Confidence 567899999999999999999999999987 78864
No 281
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.12 E-value=1.9 Score=43.05 Aligned_cols=31 Identities=26% Similarity=0.218 Sum_probs=27.1
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
++|+|.|.|++|..++..|.+.|..|. +.+.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~-l~~r 31 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVN-LWGR 31 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEE-EEec
Confidence 379999999999999999999998886 5554
No 282
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=87.07 E-value=1.6 Score=43.37 Aligned_cols=53 Identities=23% Similarity=0.256 Sum_probs=45.3
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEccCh-HHHHHHHHHHHCCCEEEEEECCC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakvVaVsD~~ 239 (410)
.+.|-+|++.. +++++.++.|++++|+|-+| ||+-++.+|...++.|. |+.++
T Consensus 136 ~PCTp~gi~~l----l~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVt-vcHs~ 189 (283)
T COG0190 136 LPCTPAGIMTL----LEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVT-VCHSR 189 (283)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEE-EEcCC
Confidence 47899998665 55678999999999999755 89999999999999997 88874
No 283
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.03 E-value=0.98 Score=44.90 Aligned_cols=34 Identities=29% Similarity=0.249 Sum_probs=29.9
Q ss_pred CCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 205 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
++++|.|.|.|++|+.+|+.|.+.|.+|+ +.|++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~-~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVR-VWSRR 36 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 46799999999999999999999999987 66654
No 284
>PRK08507 prephenate dehydrogenase; Validated
Probab=87.00 E-value=1.9 Score=42.00 Aligned_cols=31 Identities=35% Similarity=0.381 Sum_probs=25.4
Q ss_pred CeEEEEccChHHHHHHHHHHHCCC--EEEEEECC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGG--KVVAVSDI 238 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~Ga--kvVaVsD~ 238 (410)
++|+|+|+|++|+.+++.|.+.|. +|+ +.|.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~-~~d~ 33 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVY-GYDH 33 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEE-EEcC
Confidence 379999999999999999998885 555 3454
No 285
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=87.00 E-value=2 Score=41.41 Aligned_cols=89 Identities=22% Similarity=0.244 Sum_probs=49.9
Q ss_pred CeEEEEccChHHHHHHHHHHHCC---CEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccccccc
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHG---GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECD 283 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G---akvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~~D 283 (410)
++|+|+|+|++|+.+++.|.+.| .+|. +.|.+ .+.+.+..+..+ +. ..-++++++ .+||
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~-v~~r~----------~~~~~~~~~~~g-~~-----~~~~~~~~~-~~ad 64 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDII-VSDPS----------PEKRAALAEEYG-VR-----AATDNQEAA-QEAD 64 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEE-EEcCC----------HHHHHHHHHhcC-Ce-----ecCChHHHH-hcCC
Confidence 57999999999999999999888 4444 56653 233333322211 10 011223343 4789
Q ss_pred eEeecccCCccccccccccc---ceEEEecCCCC
Q 015287 284 VLVPCALGGVLNKENAADVK---AKFIIEAANHP 314 (410)
Q Consensus 284 vliPaA~~~~I~~~na~~i~---akiIvEgAN~p 314 (410)
+++.|.-...+ .+.++.++ -++|+--.|+-
T Consensus 65 vVil~v~~~~~-~~v~~~l~~~~~~~vvs~~~gi 97 (267)
T PRK11880 65 VVVLAVKPQVM-EEVLSELKGQLDKLVVSIAAGV 97 (267)
T ss_pred EEEEEcCHHHH-HHHHHHHHhhcCCEEEEecCCC
Confidence 99988643332 12222221 24677667654
No 286
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.81 E-value=1.8 Score=43.40 Aligned_cols=53 Identities=17% Similarity=0.183 Sum_probs=43.6
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHC----CCEEEEEECCC
Q 015287 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEH----GGKVVAVSDIT 239 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~----GakvVaVsD~~ 239 (410)
.++|..||...+ +++|.+++|++|+|.| ...||+-++.+|.++ ++.|. ++.++
T Consensus 141 ~PcTp~avi~lL----~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVt-v~hs~ 198 (297)
T PRK14168 141 LPCTPAGIQEML----VRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVT-IVHTR 198 (297)
T ss_pred cCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEE-EecCC
Confidence 478998887655 4678999999999999 578999999999988 67776 76654
No 287
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=86.71 E-value=4.1 Score=40.30 Aligned_cols=111 Identities=22% Similarity=0.223 Sum_probs=65.4
Q ss_pred CCCeEEEEccChHHH-HHHHHHHHCC--CEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccccc
Q 015287 205 SNMKFAIQGFGNVGS-WAAKFFHEHG--GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE 281 (410)
Q Consensus 205 ~g~~vaIqGfGnVG~-~~a~~L~~~G--akvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~ 281 (410)
+-.||+|+|.|+.+. ..+..+.+.+ ..+|+|+|.+ .+.+.+..++.+.-.. .-+.++++..+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~----------~~~a~~~a~~~~~~~~-----~~~~~~ll~~~ 66 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRD----------PERAEAFAEEFGIAKA-----YTDLEELLADP 66 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCC----------HHHHHHHHHHcCCCcc-----cCCHHHHhcCC
Confidence 346899999997764 5667777655 6999999984 4555555554332111 12346777654
Q ss_pred -cceEeecccCCccccccccc-c--cceEEEecCCCCCCHHHHH---HHHhCCceEe
Q 015287 282 -CDVLVPCALGGVLNKENAAD-V--KAKFIIEAANHPTDPEADE---ILSKKGVVIL 331 (410)
Q Consensus 282 -~DvliPaA~~~~I~~~na~~-i--~akiIvEgAN~p~t~~A~~---iL~~rGI~v~ 331 (410)
+|+++=|. ++..+.+-+.+ + ...++||=-=..+..|+++ .-+++|+.+.
T Consensus 67 ~iD~V~Iat-p~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~ 122 (342)
T COG0673 67 DIDAVYIAT-PNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLM 122 (342)
T ss_pred CCCEEEEcC-CChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 78888774 45555544432 2 4468888521112245543 3555566543
No 288
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=86.69 E-value=2 Score=43.57 Aligned_cols=96 Identities=18% Similarity=0.214 Sum_probs=55.1
Q ss_pred CeEEEEcc-ChHHHHHHHHHHHC-CCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccccccce
Q 015287 207 MKFAIQGF-GNVGSWAAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDV 284 (410)
Q Consensus 207 ~~vaIqGf-GnVG~~~a~~L~~~-GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~~~Dv 284 (410)
++|+|.|. |.+|+.+++.|.++ +.++++++|.+ +.|-.+.+. ...+.........+.++....++|+
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-----~~g~~l~~~------~~~~~~~~~~~~~~~~~~~~~~vD~ 71 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-----SAGKPLSDV------HPHLRGLVDLVLEPLDPEILAGADV 71 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-----ccCcchHHh------CcccccccCceeecCCHHHhcCCCE
Confidence 68999997 99999999999876 78999998842 111111111 0001111011111112223357999
Q ss_pred EeecccCCcccccccccc-cc-eEEEecCCCC
Q 015287 285 LVPCALGGVLNKENAADV-KA-KFIIEAANHP 314 (410)
Q Consensus 285 liPaA~~~~I~~~na~~i-~a-kiIvEgAN~p 314 (410)
++-|. ++..+.+.+..+ ++ +.|++-++..
T Consensus 72 Vf~al-P~~~~~~~v~~a~~aG~~VID~S~~f 102 (343)
T PRK00436 72 VFLAL-PHGVSMDLAPQLLEAGVKVIDLSADF 102 (343)
T ss_pred EEECC-CcHHHHHHHHHHHhCCCEEEECCccc
Confidence 98875 566666666554 32 4667766554
No 289
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.49 E-value=0.71 Score=46.66 Aligned_cols=32 Identities=34% Similarity=0.264 Sum_probs=28.8
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
++|+|+|.|.+|+..|..+...|..|+ +-|.+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~-l~D~~ 39 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVV-AWDPA 39 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEE-EEeCC
Confidence 589999999999999999999999998 66654
No 290
>PRK04148 hypothetical protein; Provisional
Probab=86.33 E-value=1.5 Score=38.85 Aligned_cols=34 Identities=32% Similarity=0.260 Sum_probs=29.5
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
.++++|+++|.| -|..+|+.|.+.|..|+| .|.+
T Consensus 15 ~~~~kileIG~G-fG~~vA~~L~~~G~~Via-IDi~ 48 (134)
T PRK04148 15 GKNKKIVELGIG-FYFKVAKKLKESGFDVIV-IDIN 48 (134)
T ss_pred ccCCEEEEEEec-CCHHHHHHHHHCCCEEEE-EECC
Confidence 467899999999 888999999999999995 5764
No 291
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=86.31 E-value=0.7 Score=46.36 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=44.3
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCce-e---CCCCCCHHHHHHHHHh
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAI-K---NPNGIDVPALLKYKKS 259 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i-~---~~~GlDi~~l~~~~~~ 259 (410)
|+|++|+|+|+|+=|.+=|.-|.+.|..|+ |.=..|.. + -++|+++..+.+..+.
T Consensus 16 LkgK~iaIIGYGsQG~ahalNLRDSGlnVi-iGlr~g~~s~~kA~~dGf~V~~v~ea~k~ 74 (338)
T COG0059 16 LKGKKVAIIGYGSQGHAQALNLRDSGLNVI-IGLRKGSSSWKKAKEDGFKVYTVEEAAKR 74 (338)
T ss_pred hcCCeEEEEecChHHHHHHhhhhhcCCcEE-EEecCCchhHHHHHhcCCEeecHHHHhhc
Confidence 899999999999999999999999999976 76666655 3 4678877666665544
No 292
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=86.31 E-value=2.9 Score=36.05 Aligned_cols=66 Identities=12% Similarity=0.194 Sum_probs=53.2
Q ss_pred CCCCchhHHHHHHHHHHHHH-HhCCCCCCCeEEEEc--------cChHHHHHHHHHHHCCCEEEEEECCCCceeC
Q 015287 179 LGREAATGLGVFFATEALLA-EHGKSISNMKFAIQG--------FGNVGSWAAKFFHEHGGKVVAVSDITGAIKN 244 (410)
Q Consensus 179 ~gr~~aTg~Gv~~~~~~~~~-~~g~~l~g~~vaIqG--------fGnVG~~~a~~L~~~GakvVaVsD~~G~i~~ 244 (410)
.|+...|.|....+.+.+.+ .....++...|-|.| .|.-...+.+.|++.|.+|+-|-|....-+|
T Consensus 38 kg~kk~TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I~DvTpiPhN 112 (114)
T TIGR03628 38 ADRDESSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIPHD 112 (114)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence 45677899999888888877 334567888999999 6777788889999999999999998755443
No 293
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=86.24 E-value=26 Score=36.80 Aligned_cols=33 Identities=36% Similarity=0.412 Sum_probs=27.3
Q ss_pred CCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 205 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
..++|+|+|.|.||..+|..|.+ |.+|+ +.|.+
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~-g~D~~ 37 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVV-GFDVN 37 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEE-EEeCC
Confidence 34789999999999999999876 68888 45653
No 294
>PLN02256 arogenate dehydrogenase
Probab=86.23 E-value=1.6 Score=43.78 Aligned_cols=33 Identities=42% Similarity=0.687 Sum_probs=29.2
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEE
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVs 236 (410)
.++++|+|+|+|++|+.+++.|.+.|.+|+++.
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d 66 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATS 66 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEE
Confidence 577899999999999999999999998888543
No 295
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=86.22 E-value=1.4 Score=41.71 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=30.8
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+++++++.|.|. |.+|+.+++.|.++|++|+ +.+.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~-~~~r 42 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVI-LNGR 42 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEE-EEeC
Confidence 478999999995 9999999999999999988 5555
No 296
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.20 E-value=1 Score=42.72 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=31.8
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
|+..+|+|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 788999999999999999999999998655588865
No 297
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=86.12 E-value=2.2 Score=42.27 Aligned_cols=130 Identities=17% Similarity=0.145 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcc
Q 015287 185 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLN 264 (410)
Q Consensus 185 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~ 264 (410)
=+.|...+++. .+.+++++++.|.|.|.+++.++-.|.+.|++-|.|.+.+ .++..+..++-. .
T Consensus 110 D~~Gf~~~L~~----~~~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~----------~~ka~~La~~~~--~ 173 (283)
T PRK14027 110 DVSGFGRGMEE----GLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD----------TSRAQALADVIN--N 173 (283)
T ss_pred CHHHHHHHHHh----cCcCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC----------HHHHHHHHHHHh--h
Confidence 46777777753 3345788999999999999999999999998666688764 233333322100 0
Q ss_pred cCCCC--eeecC---CcccccccceEeecccCCccccc----ccccc-cceEEEecCCCCCCHHHHHHHHhCCceEe
Q 015287 265 DFQGG--NAMDL---NDLLVHECDVLVPCALGGVLNKE----NAADV-KAKFIIEAANHPTDPEADEILSKKGVVIL 331 (410)
Q Consensus 265 ~~~~~--~~i~~---~~ll~~~~DvliPaA~~~~I~~~----na~~i-~akiIvEgAN~p~t~~A~~iL~~rGI~v~ 331 (410)
.++.. ...+. ++.+ .++|++|-|.--+.-..+ ....+ ...+|.+-.-+|....--+.-+++|..++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~-~~~divINaTp~Gm~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~ 249 (283)
T PRK14027 174 AVGREAVVGVDARGIEDVI-AAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIETELLKAARALGCETL 249 (283)
T ss_pred ccCcceEEecCHhHHHHHH-hhcCEEEEcCCCCCCCCCCCCCCHHHcCCCcEEEEcccCCCCCHHHHHHHHCCCEEE
Confidence 11110 01111 1112 368999977532211000 11112 34588888888853334455667777654
No 298
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=86.05 E-value=1.4 Score=43.84 Aligned_cols=33 Identities=33% Similarity=0.442 Sum_probs=27.1
Q ss_pred CeEEEEccChHHHHHH-HHHHHCCCEEEEEECCC
Q 015287 207 MKFAIQGFGNVGSWAA-KFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a-~~L~~~GakvVaVsD~~ 239 (410)
.+|+|+|.|++|...+ .++...+.++++|+|.+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d 35 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGID 35 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCC
Confidence 5899999999999765 45556689999999974
No 299
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.90 E-value=1.2 Score=47.30 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=31.6
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
+.|++|.|.|+|..|..++++|+..|++|+ ++|.+
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~-~~D~~ 44 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPT-VCDDD 44 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEE-EEcCC
Confidence 468899999999999999999999999988 68853
No 300
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=85.86 E-value=13 Score=35.99 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=58.8
Q ss_pred CCCeEEEEccChHHHHHHHHHHHCCC----EEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCee-ecCCcccc
Q 015287 205 SNMKFAIQGFGNVGSWAAKFFHEHGG----KVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNA-MDLNDLLV 279 (410)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~Ga----kvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~-i~~~~ll~ 279 (410)
+.++|+|+|+|++|+.+++-|.+.+. +++ ++|.+. +. + +... .++.++.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~-~~~~~~----------~~----------~----~~~~~~~~~~~~- 55 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIY-YHTPSK----------KN----------T----PFVYLQSNEELA- 55 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEE-EECCCh----------hc----------C----CeEEeCChHHHH-
Confidence 45789999999999999999988762 354 444421 00 0 0011 1233343
Q ss_pred cccceEeecccCCccc---ccccccccceEEEecCCCCCCHHHHHHHHh--CCceEecccc
Q 015287 280 HECDVLVPCALGGVLN---KENAADVKAKFIIEAANHPTDPEADEILSK--KGVVILPDIY 335 (410)
Q Consensus 280 ~~~DvliPaA~~~~I~---~~na~~i~akiIvEgAN~p~t~~A~~iL~~--rGI~v~PD~l 335 (410)
.+||++|-|.-...+. .+..+.++-+.|+--+++-.....++++.. +-+.++|-.-
T Consensus 56 ~~~D~Vilavkp~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p 116 (260)
T PTZ00431 56 KTCDIIVLAVKPDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEEMVGVEAKIVRVMPNTP 116 (260)
T ss_pred HhCCEEEEEeCHHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHHHcCCCCeEEEECCCch
Confidence 4789999885443321 122223334566766766554445555532 2345666544
No 301
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.78 E-value=1.2 Score=47.06 Aligned_cols=35 Identities=29% Similarity=0.300 Sum_probs=31.4
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
+.+++|.|.|+|..|..++++|.+.|++|+ ++|.+
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~-~~D~~ 47 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVV-VADDN 47 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCCEEE-EECCC
Confidence 678899999999999999999999999776 78864
No 302
>PRK08628 short chain dehydrogenase; Provisional
Probab=85.73 E-value=1.3 Score=41.81 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=30.8
Q ss_pred CCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEE
Q 015287 201 GKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 235 (410)
Q Consensus 201 g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakvVaV 235 (410)
+.+++|+++.|.| .|.+|+.+++.|.++|++|+.+
T Consensus 2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~ 37 (258)
T PRK08628 2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIF 37 (258)
T ss_pred CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEE
Confidence 4578999999999 4899999999999999998844
No 303
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=85.70 E-value=1.4 Score=41.19 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=30.3
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEE
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 236 (410)
+++++++.|.|. |.+|+++++.|.++|++|+.++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence 478999999996 8999999999999999998553
No 304
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=85.58 E-value=3.4 Score=36.56 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=53.3
Q ss_pred CCCCchhHHHHHHHHHHHHH-HhCCCCCCCeEEEEc--------cChHHHHHHHHHHHCCCEEEEEECCCCceeC
Q 015287 179 LGREAATGLGVFFATEALLA-EHGKSISNMKFAIQG--------FGNVGSWAAKFFHEHGGKVVAVSDITGAIKN 244 (410)
Q Consensus 179 ~gr~~aTg~Gv~~~~~~~~~-~~g~~l~g~~vaIqG--------fGnVG~~~a~~L~~~GakvVaVsD~~G~i~~ 244 (410)
.|+...|-|....+.+.+.+ .....++...|-|-| .|.-...+.+.|+..|.+|+.|-|....-+|
T Consensus 45 kg~kK~TpyAAq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~DvTpiPhN 119 (132)
T PRK09607 45 ADRDESSPYAAMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIPHD 119 (132)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence 45667899998888888877 334567888999999 6777788889999999999999998765554
No 305
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.58 E-value=1.2 Score=47.23 Aligned_cols=36 Identities=22% Similarity=0.427 Sum_probs=32.3
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG 240 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G 240 (410)
+++++|.|.|+|..|..+|++|.++|++|. ++|.+.
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~-~~D~~~ 40 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLR-VADTRE 40 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEE-EEcCCC
Confidence 568899999999999999999999999987 788753
No 306
>PRK06849 hypothetical protein; Provisional
Probab=85.44 E-value=1.3 Score=45.44 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=28.9
Q ss_pred CCCeEEEEccCh-HHHHHHHHHHHCCCEEEEEECCC
Q 015287 205 SNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 205 ~g~~vaIqGfGn-VG~~~a~~L~~~GakvVaVsD~~ 239 (410)
+.++|.|.|.+. +|..+++.|++.|.+|++ +|++
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~-~d~~ 37 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVIL-ADSL 37 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE-EeCC
Confidence 358999999875 899999999999999995 4654
No 307
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=85.42 E-value=2.4 Score=41.96 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=27.2
Q ss_pred CCeEEEEccChHHHHHHHHHHHCCC--EEEEEECCC
Q 015287 206 NMKFAIQGFGNVGSWAAKFFHEHGG--KVVAVSDIT 239 (410)
Q Consensus 206 g~~vaIqGfGnVG~~~a~~L~~~Ga--kvVaVsD~~ 239 (410)
-++|+|+|+|++|..+++.|.+.|. +|+ +.|.+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~-~~dr~ 40 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIV-GADRS 40 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEE-EEECC
Confidence 3689999999999999999998885 555 55653
No 308
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=85.33 E-value=0.99 Score=42.25 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=32.2
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
|+.++|.|.|.|.+|..+++.|...|.+-+.+.|.+
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 778999999999999999999999998766688764
No 309
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=85.33 E-value=0.99 Score=45.40 Aligned_cols=33 Identities=36% Similarity=0.431 Sum_probs=29.4
Q ss_pred CCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 206 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 206 g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
-++|+|.|.|.+|+..|..++..|..|+ +.|.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~-l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVV-LKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceE-EEeCC
Confidence 3689999999999999999988779998 78876
No 310
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=85.20 E-value=6.1 Score=39.01 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=28.6
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCE-EEEE
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGK-VVAV 235 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~Gak-vVaV 235 (410)
..|.+|.|.|.|.||..+++++...|++ |+++
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~ 194 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGV 194 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 3589999999999999999999999999 8754
No 311
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=85.17 E-value=1.7 Score=43.63 Aligned_cols=37 Identities=27% Similarity=0.549 Sum_probs=32.5
Q ss_pred CCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEEEC
Q 015287 201 GKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSD 237 (410)
Q Consensus 201 g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakvVaVsD 237 (410)
|.+.++++|.|.| .|-+|+++++.|.++|.+|+++.+
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r 42 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLR 42 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 4568899999999 599999999999999999997654
No 312
>PRK07060 short chain dehydrogenase; Provisional
Probab=85.04 E-value=1.7 Score=40.44 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=31.1
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 202 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 202 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
.+++++++.|.|. |.+|+++++.|.++|++|+. .+.
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~-~~r 41 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVA-AAR 41 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEE-EeC
Confidence 3578899999997 89999999999999999884 454
No 313
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.01 E-value=3.1 Score=39.48 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=55.9
Q ss_pred CCCeEEEEccChHHHHHHHHHHHCCC---E-EEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCccccc
Q 015287 205 SNMKFAIQGFGNVGSWAAKFFHEHGG---K-VVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH 280 (410)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~Ga---k-vVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~~ 280 (410)
+.+||+|.|.|++|+.+++.|.+.|. + ++ +.+.+ +.+.+.+..++.+ +.. .-+.++++ .
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~-~~~~~---------~~~~~~~~~~~~~-~~~-----~~~~~~~~-~ 65 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEII-VSNRS---------NVEKLDQLQARYN-VST-----TTDWKQHV-T 65 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEE-EECCC---------CHHHHHHHHHHcC-cEE-----eCChHHHH-h
Confidence 45789999999999999999987762 3 44 33321 1234444333221 110 11233444 3
Q ss_pred ccceEeecccCCccccccccc----ccceEEEecCCCCCCHHHHHHH
Q 015287 281 ECDVLVPCALGGVLNKENAAD----VKAKFIIEAANHPTDPEADEIL 323 (410)
Q Consensus 281 ~~DvliPaA~~~~I~~~na~~----i~akiIvEgAN~p~t~~A~~iL 323 (410)
++|+++-|.-...+ .+.+.+ ++-++|+-.+.+-......+.+
T Consensus 66 ~~DiViiavp~~~~-~~v~~~l~~~~~~~~vis~~~gi~~~~l~~~~ 111 (245)
T PRK07634 66 SVDTIVLAMPPSAH-EELLAELSPLLSNQLVVTVAAGIGPSYLEERL 111 (245)
T ss_pred cCCEEEEecCHHHH-HHHHHHHHhhccCCEEEEECCCCCHHHHHHHc
Confidence 79999988644332 333332 2336777777654333333333
No 314
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=84.99 E-value=1.2 Score=41.79 Aligned_cols=36 Identities=25% Similarity=0.285 Sum_probs=32.0
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
++..+|.|.|.|.+|+.+++.|...|.+=+.+.|.+
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 677899999999999999999999998766688865
No 315
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.98 E-value=1.5 Score=43.57 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=32.0
Q ss_pred CCCCCCeEEEEccC---hHHHHHHHHHHHCCCEEEEEECC
Q 015287 202 KSISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 202 ~~l~g~~vaIqGfG---nVG~~~a~~L~~~GakvVaVsD~ 238 (410)
.+++|+++.|.|.| .+|+.+|+.|+++|++|| +.|.
T Consensus 4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vv-v~~~ 42 (299)
T PRK06300 4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATIL-VGTW 42 (299)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEE-EEec
Confidence 56899999999996 899999999999999998 6653
No 316
>PRK12828 short chain dehydrogenase; Provisional
Probab=84.98 E-value=1.5 Score=40.37 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=30.1
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
.++++++.|.|. |.+|+.+++.|.++|++|+. .+.
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~-~~r 39 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVAL-IGR 39 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEE-EeC
Confidence 367899999985 99999999999999999884 444
No 317
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=84.96 E-value=1.6 Score=40.68 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=29.8
Q ss_pred CCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEEE
Q 015287 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 203 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakvVaVs 236 (410)
.++++++.|.| .|.+|+++++.|.++|++|+.++
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~ 37 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVD 37 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 36788999999 59999999999999999998654
No 318
>PRK09291 short chain dehydrogenase; Provisional
Probab=84.92 E-value=1.4 Score=41.50 Aligned_cols=31 Identities=23% Similarity=0.224 Sum_probs=27.1
Q ss_pred CCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEE
Q 015287 206 NMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 206 g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 236 (410)
++++.|.|. |.+|+.+++.|.++|++|++++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~ 33 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGV 33 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 468899985 9999999999999999999654
No 319
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.82 E-value=1.4 Score=46.16 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=31.7
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
+++++|.|.|+|.-|..+|++|.++|++|. ++|..
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~-~~D~~ 41 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAEVI-AWDDN 41 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEE-EECCC
Confidence 678899999999999999999999999976 78864
No 320
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.73 E-value=1.6 Score=45.51 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=31.6
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
+++++|.|.|.|..|..+|++|.++|++|+ ++|.+
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~-~~d~~ 37 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVA-AYDAE 37 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 568899999999999999999999999988 67764
No 321
>PRK06138 short chain dehydrogenase; Provisional
Probab=84.53 E-value=1.7 Score=40.64 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=29.8
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEE
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 236 (410)
+++++++.|.|. |.+|+.+++.|.++|++|+.++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~ 36 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVAD 36 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEec
Confidence 468899999995 9999999999999999998553
No 322
>KOG0089 consensus Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase [Coenzyme transport and metabolism]
Probab=84.41 E-value=1.4 Score=43.46 Aligned_cols=53 Identities=30% Similarity=0.348 Sum_probs=45.2
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 183 AATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 183 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
++|-.|++. .++++|+.+.|++++|.| .=+||.-+|-+|+..|+.+-.+-|.+
T Consensus 147 PcTP~gv~e----iL~r~gI~~~GKn~VVigRS~iVg~P~A~LL~~dG~~~~~~~dat 200 (309)
T KOG0089|consen 147 PCTPLGVVE----ILERTGIETYGKNAVVIGRSKIVGMPLALLLHNDGAHVYSVDDAT 200 (309)
T ss_pred CCchHHHHH----HHHHhCCeecCceEEEEcccccccchHHHHHhhcCCcccccCcce
Confidence 688888865 456789999999999999 68999999999999999887666654
No 323
>PTZ00117 malate dehydrogenase; Provisional
Probab=84.31 E-value=1.3 Score=44.61 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=29.2
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCC-CEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHG-GKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G-akvVaVsD~~ 239 (410)
.+.++|+|.|.|+||+.++..|...| ..| .+-|.+
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l-~L~Di~ 38 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDV-VLYDVI 38 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeE-EEEECC
Confidence 35679999999999999999998888 564 477875
No 324
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=84.31 E-value=1.9 Score=40.30 Aligned_cols=35 Identities=29% Similarity=0.308 Sum_probs=30.0
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
++++++.|.|. |.+|+.+++.|.++|++|+.+.+.
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~ 36 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGP 36 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCC
Confidence 46788999985 999999999999999999865543
No 325
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=84.22 E-value=3.2 Score=41.58 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=29.3
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEE
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVs 236 (410)
..|.+|+|+|.|.||..++.++...|++|++++
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~ 203 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLN 203 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEe
Confidence 468899999999999999999999999988543
No 326
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=84.14 E-value=2 Score=37.43 Aligned_cols=29 Identities=34% Similarity=0.410 Sum_probs=25.7
Q ss_pred EEEEccChHHHHHHHHHHHCCCEEEEEEC
Q 015287 209 FAIQGFGNVGSWAAKFFHEHGGKVVAVSD 237 (410)
Q Consensus 209 vaIqGfGnVG~~~a~~L~~~GakvVaVsD 237 (410)
|+|.|.|.+|...|-.|++.|..|.-++-
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEc
Confidence 68999999999999999999999885544
No 327
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=84.10 E-value=3.7 Score=41.68 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=28.3
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
.+|+|.|.|.+|.-++..+...|+..|-++|.+
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~ 202 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRS 202 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence 399999999999999999989997666577874
No 328
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=83.99 E-value=6.7 Score=40.86 Aligned_cols=184 Identities=21% Similarity=0.324 Sum_probs=99.3
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCCC-----------ceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG-----------AIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLN 275 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G-----------~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~ 275 (410)
++|+|.|.|=||...+-.|++.|..||+| |.+. -||+|. +++|++.....|.+. .+.+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~v-Did~~KV~~ln~g~~PI~Epg---Le~ll~~~~~~gRl~-------fTtd 69 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCV-DIDESKVELLNKGISPIYEPG---LEELLKENLASGRLR-------FTTD 69 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEE-eCCHHHHHHHhCCCCCCcCcc---HHHHHHhccccCcEE-------EEcC
Confidence 58999999999999999999999999954 6542 234442 344444333322221 1111
Q ss_pred -cccccccceEeecccCCcccccc----------ccc----c-cceEEEecCCCC--CCHHHHHHHHhCC------ceEe
Q 015287 276 -DLLVHECDVLVPCALGGVLNKEN----------AAD----V-KAKFIIEAANHP--TDPEADEILSKKG------VVIL 331 (410)
Q Consensus 276 -~ll~~~~DvliPaA~~~~I~~~n----------a~~----i-~akiIvEgAN~p--~t~~A~~iL~~rG------I~v~ 331 (410)
+---.++|+.+-|---.. .+++ |+. + +.++||-=.--| +|.+..+.+.+.. |..-
T Consensus 70 ~~~a~~~adv~fIavgTP~-~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~N 148 (414)
T COG1004 70 YEEAVKDADVVFIAVGTPP-DEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASN 148 (414)
T ss_pred HHHHHhcCCEEEEEcCCCC-CCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecC
Confidence 111236777776642111 1122 111 1 336777666666 4677777777766 7777
Q ss_pred ccccccccCc---------ee-h----hHHHhhhcc------c-----CCCCHHHH-----HHHHHHHHHHHHHHHHHHH
Q 015287 332 PDIYANSGGV---------TV-S----YFEWVQNIQ------G-----FMWEEEKV-----NHELKRYMMSAFKDIKTMC 381 (410)
Q Consensus 332 PD~laNaGGV---------i~-s----~~E~~qn~~------~-----~~w~~~~v-----~~~l~~~m~~~~~~v~~~a 381 (410)
|.||--.-.| ++ + ..+.+..+. + ..+++.|. +.-|..++ .=++++-+.|
T Consensus 149 PEFLREG~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKI-sFiNEia~ic 227 (414)
T COG1004 149 PEFLREGSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKI-SFINEIANIC 227 (414)
T ss_pred hHHhcCcchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 7777554333 00 0 011111110 0 01222221 22233332 3347777888
Q ss_pred HHcCCCHHHHHHHHHH-HHHHHH
Q 015287 382 QTHNCNLRMGAFTLGV-NRVAQA 403 (410)
Q Consensus 382 ~~~~~~~r~aA~~~A~-~ri~~a 403 (410)
++.|.+.++.+.-+++ .||...
T Consensus 228 e~~g~D~~~V~~gIGlD~RIG~~ 250 (414)
T COG1004 228 EKVGADVKQVAEGIGLDPRIGNH 250 (414)
T ss_pred HHhCCCHHHHHHHcCCCchhhHh
Confidence 8888888888776655 355443
No 329
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=83.97 E-value=2.3 Score=39.35 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=30.6
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
.++++++.|.|. |.+|+++++.|.+.|++|+.++..
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYAS 38 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 467789999995 999999999999999999756543
No 330
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=83.82 E-value=22 Score=37.24 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=31.1
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEEC
Q 015287 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSD 237 (410)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 237 (410)
..++|+||+|-|-......++++|.+.|.+++.+.-
T Consensus 299 ~~l~gkrv~i~g~~~~~~~la~~L~elGm~v~~~~~ 334 (435)
T cd01974 299 QYLHGKKFALYGDPDFLIGLTSFLLELGMEPVHVLT 334 (435)
T ss_pred HhcCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEEe
Confidence 457999999999888888999999999999977653
No 331
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.82 E-value=2.1 Score=39.97 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=30.5
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
+++++++.|.|. |.+|+.+++.|.++|++|+ +.+.+
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~-~~~r~ 38 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVV-VTDRN 38 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEE-EEeCC
Confidence 467889999995 9999999999999999987 44553
No 332
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=83.81 E-value=14 Score=39.87 Aligned_cols=175 Identities=18% Similarity=0.260 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCccccCCCCCCCCchhHHHHHHHH
Q 015287 114 MSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGLGVFFAT 193 (410)
Q Consensus 114 ~~e~e~~~r~f~~~l~~~iG~~~dipapDvgt~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~ 193 (410)
-.|-..|...|+.++..--|+..=|-=.|+++.-.-. +.+.|+... -++. +..+-||-=+..++
T Consensus 234 g~eYd~~~dEFm~Av~~~yG~~~lIqFEDF~~~nAfr--lL~kYr~~~----c~FN----------DDIQGTaaValAgl 297 (582)
T KOG1257|consen 234 GKEYDEFLDEFMEAVVQRYGPNTLIQFEDFANHNAFR--LLEKYRNKY----CMFN----------DDIQGTAAVALAGL 297 (582)
T ss_pred ccHHHHHHHHHHHHHHHHhCcceEEEehhccchhHHH--HHHHhcccc----ceec----------ccccchhHHHHHHH
Confidence 3455568889999998888998777778998742211 123443211 1111 12345666666777
Q ss_pred HHHHHHhCCCCCCCeEEEEccChHHHHHHHHHH----HCCC-------EEEEEECCCCceeCCC--CCCHHHHHHHHHhC
Q 015287 194 EALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH----EHGG-------KVVAVSDITGAIKNPN--GIDVPALLKYKKSN 260 (410)
Q Consensus 194 ~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~----~~Ga-------kvVaVsD~~G~i~~~~--GlDi~~l~~~~~~~ 260 (410)
-.+++..+.+++.-++.++|.|..|.++|+++. +.|. ||- +.|++|-|.... .|+.... .+.++.
T Consensus 298 laa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~Gl~~eeA~kkIw-lvD~~GLi~~~r~~~l~~~~~-~fAk~~ 375 (582)
T KOG1257|consen 298 LAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKEGLSEEEARKKIW-LVDSKGLITKGRKASLTEEKK-PFAKDH 375 (582)
T ss_pred HHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHcCCCHHHHhccEE-EEecCceeeccccCCCChhhc-cccccC
Confidence 788888899999999999999999999998874 3452 454 778877665322 2221111 000000
Q ss_pred CCcccCCCCeeecCCc-ccccccceEeecc-cCCccccccccc---ccce-EEEecCCCCC
Q 015287 261 KSLNDFQGGNAMDLND-LLVHECDVLVPCA-LGGVLNKENAAD---VKAK-FIIEAANHPT 315 (410)
Q Consensus 261 g~v~~~~~~~~i~~~~-ll~~~~DvliPaA-~~~~I~~~na~~---i~ak-iIvEgAN~p~ 315 (410)
..+ .+-.+ +-.++..|||=|+ .++..|++..+. ...| +|---.| |+
T Consensus 376 ~~~--------~~L~e~V~~vKPtvLiG~S~~~g~Fteevl~~Ma~~~erPiIFalSN-PT 427 (582)
T KOG1257|consen 376 EEI--------KDLEEAVKEVKPTVLIGASGVGGAFTEEVLRAMAKSNERPIIFALSN-PT 427 (582)
T ss_pred hHH--------HHHHHHHHhcCCcEEEecccCCccCCHHHHHHHHhcCCCceEEecCC-Cc
Confidence 000 01112 2367899999877 588999887654 3444 4444444 64
No 333
>PRK06523 short chain dehydrogenase; Provisional
Probab=83.81 E-value=2 Score=40.60 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=31.1
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 202 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 202 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
.+++|+++.|.|. |.+|+.+++.|.++|++|+.+ +.
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~-~r 41 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTT-AR 41 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEE-eC
Confidence 4588999999995 899999999999999998854 44
No 334
>PLN02206 UDP-glucuronate decarboxylase
Probab=83.74 E-value=1.7 Score=45.69 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=32.0
Q ss_pred hCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEE
Q 015287 200 HGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 200 ~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 236 (410)
+|..-+++||.|.|. |-||+++++.|.++|.+|+++.
T Consensus 113 ~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 113 LGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred cccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEe
Confidence 355567899999995 9999999999999999999664
No 335
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=83.73 E-value=1.7 Score=42.80 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=30.5
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
.++.+|+|.|.|.||..+++++...|+++|.++|.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 35789999999999999999999999997767665
No 336
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=83.61 E-value=1.8 Score=37.78 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=27.1
Q ss_pred eEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
+|.|.|.|.+|+.+++.|...|.+=+.+.|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 58999999999999999999998544477754
No 337
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.54 E-value=2.1 Score=39.94 Aligned_cols=35 Identities=20% Similarity=0.422 Sum_probs=30.4
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+++++++.|.|. |.+|+.+++.|.++|++|+ +.|.
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi-~~~r 37 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLA-LIDL 37 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence 367899999997 9999999999999999987 4554
No 338
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=83.52 E-value=3.1 Score=41.42 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=32.3
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
|+..+|.|.|.|.+|..+|+.|...|.+=+.+.|.+
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d 52 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTK 52 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 677899999999999999999999999877788864
No 339
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=83.49 E-value=4.4 Score=40.76 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=70.0
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHH
Q 015287 177 GSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLK 255 (410)
Q Consensus 177 Gs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~ 255 (410)
|..|-...|+|-- +.+. ...-+|.||.|.|. |.||+-+-++-.-.|.+|||++-++- +..-
T Consensus 132 g~lGm~glTAy~G---f~ei----~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~E-----------Kv~l 193 (343)
T KOG1196|consen 132 GLLGMPGLTAYAG---FYEI----CSPKKGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKE-----------KVDL 193 (343)
T ss_pred hccCCchhHHHHH---HHHh----cCCCCCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCChh-----------hhhh
Confidence 4445455666543 3333 33447899999995 99999998888889999999998853 2222
Q ss_pred HHHhCCCcc--cCCCCeeecCC----cccccccceEeecccCCcccccccc-cccceEEEecCCCC
Q 015287 256 YKKSNKSLN--DFQGGNAMDLN----DLLVHECDVLVPCALGGVLNKENAA-DVKAKFIIEAANHP 314 (410)
Q Consensus 256 ~~~~~g~v~--~~~~~~~i~~~----~ll~~~~DvliPaA~~~~I~~~na~-~i~akiIvEgAN~p 314 (410)
.+.+.|.-. +|... .+.+ ..+..-.||++.--.++.+++--.. +.+.|+++-|+=.+
T Consensus 194 l~~~~G~d~afNYK~e--~~~~~aL~r~~P~GIDiYfeNVGG~~lDavl~nM~~~gri~~CG~ISq 257 (343)
T KOG1196|consen 194 LKTKFGFDDAFNYKEE--SDLSAALKRCFPEGIDIYFENVGGKMLDAVLLNMNLHGRIAVCGMISQ 257 (343)
T ss_pred hHhccCCccceeccCc--cCHHHHHHHhCCCcceEEEeccCcHHHHHHHHhhhhccceEeeeeehh
Confidence 222222111 12110 0111 2334568999998766665543222 24778888887443
No 340
>PRK07774 short chain dehydrogenase; Provisional
Probab=83.46 E-value=2.2 Score=39.98 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=30.3
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
.++++++.|.|. |.+|+++++.|.++|++|+. .|.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~-~~r 38 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVV-ADI 38 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEE-EeC
Confidence 367899999996 99999999999999999984 454
No 341
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=83.40 E-value=12 Score=37.80 Aligned_cols=115 Identities=19% Similarity=0.199 Sum_probs=66.4
Q ss_pred CCCeEEEEccChHHHHHHHHHHH-CCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCC-CCee-ecCCcccccc
Q 015287 205 SNMKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQ-GGNA-MDLNDLLVHE 281 (410)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~-~~~~-i~~~~ll~~~ 281 (410)
.-++++|.|.|+.|++-++.|.. ...+-|.|.|.+ .+...++.++-. .+. .... -+.++.+ .+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~----------~~~~~~~~~~~~---~~g~~v~~~~~~~eav-~~ 192 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRT----------PSTREKFALRAS---DYEVPVRAATDPREAV-EG 192 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCC----------HHHHHHHHHHHH---hhCCcEEEeCCHHHHh-cc
Confidence 45789999999999997777754 334445576663 333333322211 111 1111 2334444 58
Q ss_pred cceEeecccC--CcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEecccc
Q 015287 282 CDVLVPCALG--GVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIY 335 (410)
Q Consensus 282 ~DvliPaA~~--~~I~~~na~~i~akiIvEgAN~p~t~~A~~iL~~rGI~v~PD~l 335 (410)
|||++-|.-. -.+..+..+. .+.+.+=|++.|-..|.+..+-++.- ++-|..
T Consensus 193 aDiVitaT~s~~P~~~~~~l~~-g~~v~~vGs~~p~~~Eld~~~l~~a~-v~vD~~ 246 (325)
T TIGR02371 193 CDILVTTTPSRKPVVKADWVSE-GTHINAIGADAPGKQELDPEILKNAK-IFVDDL 246 (325)
T ss_pred CCEEEEecCCCCcEecHHHcCC-CCEEEecCCCCcccccCCHHHHhcCc-EEECCH
Confidence 9999987643 3455544433 77888899998866666544444442 334643
No 342
>PRK08339 short chain dehydrogenase; Provisional
Probab=83.40 E-value=2.2 Score=40.94 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=31.0
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 202 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 202 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
.+++|+++.|.|. |.+|+.+|+.|.++|++|+ +.|.
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~-~~~r 40 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVI-LLSR 40 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEE-EEeC
Confidence 3578999999996 7899999999999999988 5555
No 343
>PRK06841 short chain dehydrogenase; Provisional
Probab=83.34 E-value=2.2 Score=40.15 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=30.5
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+++++++.|.|. |.+|+++++.|.++|++|+. .+.
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~-~~r 47 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVAL-LDR 47 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEE-EeC
Confidence 578999999995 99999999999999999884 444
No 344
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.30 E-value=2.1 Score=39.72 Aligned_cols=35 Identities=26% Similarity=0.293 Sum_probs=30.1
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
++++++|.|.|. |.+|+.+++.|.++|++|+.+ +.
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~-~r 37 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCIN-SR 37 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEE-eC
Confidence 367899999996 889999999999999999854 44
No 345
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.24 E-value=1.8 Score=44.91 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=29.8
Q ss_pred CCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 205 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
+.++|.|.|+|..|..+|+.|+++|++|+ ++|.+
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~~V~-g~D~~ 35 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGVYVI-GVDKS 35 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 45689999999999999999999999877 67754
No 346
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=83.14 E-value=1.5 Score=46.29 Aligned_cols=36 Identities=33% Similarity=0.464 Sum_probs=32.5
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG 240 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G 240 (410)
..+++|+|.|+|.-|..++++|++.|++|+ ++|.+-
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~-v~D~~~ 40 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVT-VSDDRP 40 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEE-EEcCCC
Confidence 458999999999999999999999999998 888753
No 347
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=83.01 E-value=2.2 Score=42.48 Aligned_cols=32 Identities=38% Similarity=0.416 Sum_probs=27.3
Q ss_pred CeEEEEccChHHHHHHHHHHHCCC--EEEEEECCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGG--KVVAVSDIT 239 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~Ga--kvVaVsD~~ 239 (410)
++|+|.|.|+||+.+|..|...|. .|+ +.|.+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~-l~D~~ 34 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELV-LIDIN 34 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEE-EEeCC
Confidence 379999999999999999999884 565 77875
No 348
>PRK07890 short chain dehydrogenase; Provisional
Probab=82.98 E-value=2.1 Score=40.30 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=29.8
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
++++++.|.|. |.+|+.+++.|.++|++|+ +.|.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~-~~~r 37 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVV-LAAR 37 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEE-EEeC
Confidence 57899999995 8999999999999999998 5555
No 349
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=82.97 E-value=1.3 Score=36.43 Aligned_cols=35 Identities=31% Similarity=0.323 Sum_probs=28.7
Q ss_pred CCeEEEEccChHHHHHHH-HHHHCCCEEEEEECCCC
Q 015287 206 NMKFAIQGFGNVGSWAAK-FFHEHGGKVVAVSDITG 240 (410)
Q Consensus 206 g~~vaIqGfGnVG~~~a~-~L~~~GakvVaVsD~~G 240 (410)
..+++|+|.|+.|+.++. .+...|.+++++.|.+.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~ 38 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDP 38 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECT
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCC
Confidence 468999999999998873 34578999999999753
No 350
>PRK06949 short chain dehydrogenase; Provisional
Probab=82.97 E-value=2.4 Score=39.88 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=30.1
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEE
Q 015287 202 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 235 (410)
Q Consensus 202 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 235 (410)
.+++++++.|.|. |.+|+++++.|.++|++|+++
T Consensus 5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~ 39 (258)
T PRK06949 5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLA 39 (258)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 3478999999995 999999999999999998854
No 351
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=82.96 E-value=2.3 Score=40.08 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=30.3
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+++++++.|.|. |.+|+++++.|.++|++|+. .+.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~-~~r 39 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAI-ADL 39 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEE-EeC
Confidence 367899999996 99999999999999999984 444
No 352
>PRK08703 short chain dehydrogenase; Provisional
Probab=82.96 E-value=2.3 Score=39.68 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=30.6
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
+++++++.|.|. |.+|+.+++.|.++|++|+. .+.+
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~-~~r~ 39 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVIL-VARH 39 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEE-EeCC
Confidence 478899999995 99999999999999999884 4543
No 353
>PRK08291 ectoine utilization protein EutC; Validated
Probab=82.84 E-value=15 Score=37.10 Aligned_cols=118 Identities=10% Similarity=0.046 Sum_probs=65.9
Q ss_pred CCCeEEEEccChHHHHHHHHHHH-CCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeec-CCccccccc
Q 015287 205 SNMKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMD-LNDLLVHEC 282 (410)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~-~~~ll~~~~ 282 (410)
..++++|.|.|..|+..+..|.. .+.+-|.|.+.+ .+.+.++.++-..-.+.+ ....+ .++.+ .++
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~----------~~~a~~l~~~~~~~~g~~-v~~~~d~~~al-~~a 198 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD----------AAKAEAYAADLRAELGIP-VTVARDVHEAV-AGA 198 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC----------HHHHHHHHHHHhhccCce-EEEeCCHHHHH-ccC
Confidence 45799999999999998888874 566666677763 334443333211000110 01111 12333 378
Q ss_pred ceEeeccc--CCcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEecccc
Q 015287 283 DVLVPCAL--GGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIY 335 (410)
Q Consensus 283 DvliPaA~--~~~I~~~na~~i~akiIvEgAN~p~t~~A~~iL~~rGI~v~PD~l 335 (410)
||++-|.- +-.|..+..+. .+.+.+=|++.|.-.|.+.-+-++.-.|+-|.+
T Consensus 199 DiVi~aT~s~~p~i~~~~l~~-g~~v~~vg~d~~~~rEld~~~l~~a~~v~vD~~ 252 (330)
T PRK08291 199 DIIVTTTPSEEPILKAEWLHP-GLHVTAMGSDAEHKNEIAPAVFAAADLYVCDRL 252 (330)
T ss_pred CEEEEeeCCCCcEecHHHcCC-CceEEeeCCCCCCcccCCHHHHhhCCEEEeCCH
Confidence 99987753 33455443332 345777778877666665444444433444544
No 354
>PRK09186 flagellin modification protein A; Provisional
Probab=82.78 E-value=2.2 Score=40.07 Aligned_cols=32 Identities=34% Similarity=0.457 Sum_probs=28.8
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEE
Q 015287 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 235 (410)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 235 (410)
++++++.|.|. |.+|+++|+.|.+.|++|+.+
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~ 34 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAA 34 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 57899999996 899999999999999999854
No 355
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=82.77 E-value=4 Score=41.26 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=30.6
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
..|.+|.|.|.|.||..+++++...|++|++++++
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~ 216 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSS 216 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 36889999999999999999999999998866544
No 356
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=82.75 E-value=1.9 Score=42.01 Aligned_cols=31 Identities=29% Similarity=0.379 Sum_probs=26.9
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
++|+|.|.|++|+.+|..|.+.|..|+. .|.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~-~~r 31 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTL-VAR 31 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEE-EEC
Confidence 4799999999999999999999999874 444
No 357
>PRK12829 short chain dehydrogenase; Provisional
Probab=82.74 E-value=2.1 Score=40.29 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=28.9
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEE
Q 015287 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 235 (410)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 235 (410)
++++++.|.|. |.+|+.+++.|.++|++|+.+
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~ 41 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVC 41 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 78899999995 999999999999999998744
No 358
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=82.70 E-value=1.8 Score=45.43 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=31.4
Q ss_pred CCCCeEEEEccChHHHH-HHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSW-AAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~-~a~~L~~~GakvVaVsD~~ 239 (410)
.++++|.|.|.|..|.. +|++|.++|++|. ++|.+
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~-~~D~~ 40 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVS-GSDLK 40 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEE-EECCC
Confidence 46789999999999999 7999999999987 78975
No 359
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=82.69 E-value=2.1 Score=42.86 Aligned_cols=33 Identities=30% Similarity=0.499 Sum_probs=29.3
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEE
Q 015287 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 236 (410)
+++++|.|.|. |-+|+++++.|.++|.+|++++
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~ 35 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYS 35 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEe
Confidence 46889999995 9999999999999999999654
No 360
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=82.68 E-value=61 Score=34.28 Aligned_cols=172 Identities=18% Similarity=0.192 Sum_probs=97.8
Q ss_pred CCCCceeE-EecCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccC-----CCCCCCHHHHHHHHHHhhhhhC---CCC--
Q 015287 97 PYGGAKGG-IGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPA-----PDMGTNSQTMAWILDEYSKFHG---HSP-- 165 (410)
Q Consensus 97 p~GGaKgg-I~~dP~~~s~~e~e~~~r~f~~~l~~~iG~~~dipa-----pDvgt~~~~m~wi~d~~~~~~g---~~~-- 165 (410)
++-|-.-+ +.+.|..-+. -+|-.++..+.|....+.. -.-|-+-+|-+.+...|..+-. ...
T Consensus 123 ~L~GK~v~~lF~epSTRTR-------~SFE~A~~~LGg~~i~l~~~~~ss~~kGESi~DTarvLs~y~D~IviR~~~~~~ 195 (429)
T PRK11891 123 VLEGAVLGNLFFEASTRTR-------VSFGAAFCRLGGSVCDTTGFTFSSMAKGESIYDTSRVMSGYVDALVIRHPEQGS 195 (429)
T ss_pred ccCCcEEEEEeccCCchhH-------HHHHHHHHHcCCeEEEeCCccccCCCCCCCHHHHHHHHHHhCCEEEEeCCchhH
Confidence 35443333 3556665332 3677888888776654422 2345667777778777743311 111
Q ss_pred ----ceecCccccCCCC-CCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc---ChHHHHHHHHHHHC-CCEEEEEE
Q 015287 166 ----AVVTGKPIDLGGS-LGREAATGLGVFFATEALLAEHGKSISNMKFAIQGF---GNVGSWAAKFFHEH-GGKVVAVS 236 (410)
Q Consensus 166 ----~~~tGkp~~~GGs-~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf---GnVG~~~a~~L~~~-GakvVaVs 236 (410)
+-....|+..+|+ .+.-+.-+..=++++++-+..+|..++|++|++.|- +||...++..|... |++|+ ++
T Consensus 196 ~~e~A~~s~vPVINAgdg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~-l~ 274 (429)
T PRK11891 196 VAEFARATNLPVINGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFT-LV 274 (429)
T ss_pred HHHHHHhCCCCEEECCCCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEE-EE
Confidence 1236788888885 333344444445555543211233589999999997 59999999988775 99987 33
Q ss_pred CCCCceeCCCCCCH-HHHHHHHHhCC-CcccCCCCeeecCCcccccccceEeecc
Q 015287 237 DITGAIKNPNGIDV-PALLKYKKSNK-SLNDFQGGNAMDLNDLLVHECDVLVPCA 289 (410)
Q Consensus 237 D~~G~i~~~~GlDi-~~l~~~~~~~g-~v~~~~~~~~i~~~~ll~~~~DvliPaA 289 (410)
.|.|+++ +.+.+..++.| ++.-+ -+.++.+ .++||++.-.
T Consensus 275 -------~P~~~~~~~~~~~~~~~~G~~v~~~-----~d~~eav-~~ADVVYt~~ 316 (429)
T PRK11891 275 -------SPPTLEMPAYIVEQISRNGHVIEQT-----DDLAAGL-RGADVVYATR 316 (429)
T ss_pred -------CCCccccCHHHHHHHHhcCCeEEEE-----cCHHHHh-CCCCEEEEcC
Confidence 3556532 44444433322 22111 1122333 3889988844
No 361
>PRK05876 short chain dehydrogenase; Provisional
Probab=82.67 E-value=2.3 Score=41.14 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=30.9
Q ss_pred CCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 203 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
+++++++.|.| .|.+|+++|+.|.++|++|+ ++|.+
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv-~~~r~ 39 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGARVV-LGDVD 39 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEeCC
Confidence 37889999998 58999999999999999987 56653
No 362
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=82.67 E-value=1.9 Score=42.36 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=28.4
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
++|+|.|.|.+|+.+|..|...|..|+ +.|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~-l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVT-IVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEE-EEeCC
Confidence 589999999999999999999999988 56653
No 363
>PRK10206 putative oxidoreductase; Provisional
Probab=82.56 E-value=2.4 Score=42.90 Aligned_cols=107 Identities=19% Similarity=0.286 Sum_probs=56.5
Q ss_pred CeEEEEccChHHH-HHHHHH-HH-CCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCcccc-ccc
Q 015287 207 MKFAIQGFGNVGS-WAAKFF-HE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV-HEC 282 (410)
Q Consensus 207 ~~vaIqGfGnVG~-~~a~~L-~~-~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll~-~~~ 282 (410)
.||+|+|+|+.+. .-+..+ .. .+.+|+||+|.+. +. .+..++.+.+.-| -+-+++|+ .++
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~----------~~-~~~~~~~~~~~~~-----~~~~ell~~~~i 65 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHA----------KP-EEQAPIYSHIHFT-----SDLDEVLNDPDV 65 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCCh----------hH-HHHHHhcCCCccc-----CCHHHHhcCCCC
Confidence 4899999999775 233444 32 4789999999742 11 1222221111111 13356664 468
Q ss_pred ceEeecccCCccccccccc-c--cceEEEecCCCCCCHHHHHH---HHhCCceE
Q 015287 283 DVLVPCALGGVLNKENAAD-V--KAKFIIEAANHPTDPEADEI---LSKKGVVI 330 (410)
Q Consensus 283 DvliPaA~~~~I~~~na~~-i--~akiIvEgAN~p~t~~A~~i---L~~rGI~v 330 (410)
|+++-|. ++..+.+.+.+ + +..++||=-=.....+++++ .+++|+.+
T Consensus 66 D~V~I~t-p~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l 118 (344)
T PRK10206 66 KLVVVCT-HADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTV 118 (344)
T ss_pred CEEEEeC-CchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEE
Confidence 8888764 55555554433 2 33577763111122444443 55566654
No 364
>PRK05309 30S ribosomal protein S11; Validated
Probab=82.45 E-value=5.3 Score=35.12 Aligned_cols=65 Identities=18% Similarity=0.244 Sum_probs=49.3
Q ss_pred CCCchhHHHHHHHHHHHHH-HhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeC
Q 015287 180 GREAATGLGVFFATEALLA-EHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKN 244 (410)
Q Consensus 180 gr~~aTg~Gv~~~~~~~~~-~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~ 244 (410)
|....|-|....+.+.+.+ .....++...|.+-|+|.=-..+.+.|...|.+|+.|.|....-||
T Consensus 53 g~rK~T~~Aa~~aa~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~~I~D~TpiphN 118 (128)
T PRK05309 53 GSRKSTPYAAQVAAEDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVTSIKDVTPIPHN 118 (128)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence 3446777777777776665 3344567888999999986677779999999999999998765443
No 365
>PRK12742 oxidoreductase; Provisional
Probab=82.42 E-value=2.6 Score=39.09 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=29.3
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEE
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 235 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 235 (410)
.++++++.|.|. |.+|+.+++.|.++|++|+.+
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~ 36 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFT 36 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEe
Confidence 367899999995 999999999999999998844
No 366
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=82.42 E-value=2.5 Score=40.19 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=31.5
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 202 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 202 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
.+++++++.|.|. +.+|+.+|+.|.+.|++|+.++++
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 41 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNS 41 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 3588999999996 899999999999999999855443
No 367
>PLN02240 UDP-glucose 4-epimerase
Probab=82.27 E-value=2.4 Score=42.07 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=30.2
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEE
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 236 (410)
.+++++|.|.|. |.+|+++++.|.++|.+|++++
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 467899999985 9999999999999999999764
No 368
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.23 E-value=2.2 Score=41.23 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=30.0
Q ss_pred CCCCeEEEEccC---hHHHHHHHHHHHCCCEEEEEECC
Q 015287 204 ISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 204 l~g~~vaIqGfG---nVG~~~a~~L~~~GakvVaVsD~ 238 (410)
++++++.|.|.+ .+|+.+|+.|+++|++|+ +++.
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~-~~~r 41 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELA-FTYQ 41 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEE-EecC
Confidence 688999999987 699999999999999998 5554
No 369
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=82.17 E-value=4.6 Score=42.08 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=32.3
Q ss_pred CCCCCCeEEEEcc-----------------ChHHHHHHHHHHHCCCEEEEEECCCC
Q 015287 202 KSISNMKFAIQGF-----------------GNVGSWAAKFFHEHGGKVVAVSDITG 240 (410)
Q Consensus 202 ~~l~g~~vaIqGf-----------------GnVG~~~a~~L~~~GakvVaVsD~~G 240 (410)
.+++|++|.|.|. |.+|..+|+.|.++|++|+.+ +...
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v-~~~~ 238 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLV-SGPV 238 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEe-CCCc
Confidence 4689999999987 889999999999999999854 4433
No 370
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.15 E-value=2.5 Score=40.42 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=30.9
Q ss_pred CCCCCeEEEEccC---hHHHHHHHHHHHCCCEEEEEECCC
Q 015287 203 SISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 203 ~l~g~~vaIqGfG---nVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
+++|+++.|.|.+ .+|..+|+.|.+.|++|+ ++|.+
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~-l~~r~ 45 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELA-VTYLN 45 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEE-EEeCC
Confidence 4789999999975 699999999999999987 55653
No 371
>PRK06194 hypothetical protein; Provisional
Probab=82.05 E-value=2.5 Score=40.67 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=29.9
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+++++++.|.|. |.+|+++++.|.++|++|+ +.|.
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~-~~~r 38 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLV-LADV 38 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEE-EEeC
Confidence 367889999995 8999999999999999988 4454
No 372
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=82.00 E-value=3.8 Score=34.70 Aligned_cols=32 Identities=34% Similarity=0.379 Sum_probs=27.1
Q ss_pred eEEEEcc-ChHHHHHHHHHHH-CCCEEEEEECCC
Q 015287 208 KFAIQGF-GNVGSWAAKFFHE-HGGKVVAVSDIT 239 (410)
Q Consensus 208 ~vaIqGf-GnVG~~~a~~L~~-~GakvVaVsD~~ 239 (410)
+++|.|. |.+|..+++.|.+ .+.+++++++++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~ 34 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASA 34 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEech
Confidence 5889995 9999999999987 589999996653
No 373
>PRK07411 hypothetical protein; Validated
Probab=81.96 E-value=1.7 Score=44.95 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=31.9
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
|+..+|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 677899999999999999999999998766688854
No 374
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.88 E-value=1.9 Score=42.26 Aligned_cols=32 Identities=28% Similarity=0.353 Sum_probs=28.3
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
++|+|.|.|.+|+.+|..|.+.|.+|+ +.|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~-~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTT-LVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEE-EEeCC
Confidence 479999999999999999999999988 55654
No 375
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.85 E-value=2.7 Score=39.29 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=29.5
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+++++++|.|. |.+|+.+++.|.++|++|+.+.+.
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r 37 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYAR 37 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 46789999995 899999999999999998854443
No 376
>PRK05867 short chain dehydrogenase; Provisional
Probab=81.83 E-value=2.7 Score=39.63 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=30.5
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+++++++.|.|. |.+|+.+++.|.++|++|+ +.+.
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~-~~~r 41 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVA-IAAR 41 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEcC
Confidence 478999999996 8999999999999999998 4454
No 377
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=81.69 E-value=11 Score=34.32 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeE-EEEccCh---HHHHHHHHHHHCCCEEEE
Q 015287 184 ATGLGVFFATEALLAEHGKSISNMKF-AIQGFGN---VGSWAAKFFHEHGGKVVA 234 (410)
Q Consensus 184 aTg~Gv~~~~~~~~~~~g~~l~g~~v-aIqGfGn---VG~~~a~~L~~~GakvVa 234 (410)
..|++++..++..+. ..+..+| ++.|-|| -|..+|+.|.++|.+|..
T Consensus 7 ~Ag~~~a~~i~~~~~----~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 7 NAGRAIAELIRKLFG----SPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV 57 (169)
T ss_dssp HHHHHHHHHHHHHST----CCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHhc----ccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE
Confidence 467777776655442 4455566 5689866 456788999999999874
No 378
>PRK06125 short chain dehydrogenase; Provisional
Probab=81.66 E-value=2.9 Score=39.64 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=31.2
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 202 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 202 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
.+++++++.|.|. |.+|+.+++.|.++|++|+. .+.+
T Consensus 3 ~~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~-~~r~ 40 (259)
T PRK06125 3 LHLAGKRVLITGASKGIGAAAAEAFAAEGCHLHL-VARD 40 (259)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEE-EeCC
Confidence 3578899999997 89999999999999999884 4553
No 379
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=81.64 E-value=2.3 Score=42.64 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=31.5
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEEC
Q 015287 202 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSD 237 (410)
Q Consensus 202 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 237 (410)
..++.++|.|.|. |-+|+++++.|.++|.+|+++.-
T Consensus 11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 11 LVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred ccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 3477899999995 99999999999999999997753
No 380
>CHL00041 rps11 ribosomal protein S11
Probab=81.63 E-value=6 Score=34.13 Aligned_cols=65 Identities=20% Similarity=0.213 Sum_probs=49.3
Q ss_pred CCCchhHHHHHHHHHHHHH-HhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeC
Q 015287 180 GREAATGLGVFFATEALLA-EHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKN 244 (410)
Q Consensus 180 gr~~aTg~Gv~~~~~~~~~-~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~ 244 (410)
|....|-|....+.+.+++ .....++...|.|-|+|.=-..+.+.|.+.|.+|+-|.|....-||
T Consensus 49 g~rK~T~~Aa~~~a~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~~I~D~TpiphN 114 (116)
T CHL00041 49 GARKGTPFAAQTAAENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLSSIRDVTPMPHN 114 (116)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence 3445777777777766666 2334578889999999976677779999999999999998765444
No 381
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=81.57 E-value=2.8 Score=39.65 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=30.8
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 202 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 202 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
.+++++++.|.|. |.+|+++++.|.++|++|+ +.+.
T Consensus 8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~-~~~r 44 (259)
T PRK08213 8 FDLSGKTALVTGGSRGLGLQIAEALGEAGARVV-LSAR 44 (259)
T ss_pred hCcCCCEEEEECCCchHHHHHHHHHHHcCCEEE-EEeC
Confidence 3478999999995 9999999999999999988 4454
No 382
>PRK09072 short chain dehydrogenase; Provisional
Probab=81.49 E-value=2.9 Score=39.70 Aligned_cols=35 Identities=17% Similarity=0.382 Sum_probs=29.9
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+++++++.|.|. |.+|+.+++.|.++|++|+.+ +.
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~-~r 37 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLV-GR 37 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE-EC
Confidence 467889999995 999999999999999998854 44
No 383
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.47 E-value=2.5 Score=40.16 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=29.7
Q ss_pred CCCCeEEEEccC---hHHHHHHHHHHHCCCEEEEEECC
Q 015287 204 ISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 204 l~g~~vaIqGfG---nVG~~~a~~L~~~GakvVaVsD~ 238 (410)
++|+++.|.|.+ .+|+.+|+.|.+.|++|+ +.+.
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi-~~~r 41 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVI-YTYQ 41 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEE-EecC
Confidence 789999999985 799999999999999998 4444
No 384
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=81.34 E-value=2.5 Score=39.66 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=30.2
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
++++++.|.|. |.+|.++++.|.+.|++|+. .|.+
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~-~~r~ 45 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHGATVIL-LGRT 45 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCcEEE-EeCC
Confidence 68899999985 99999999999999999984 4553
No 385
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=81.33 E-value=2.8 Score=39.86 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=30.8
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
+++++++.|.|. |.+|+.+++.|.++|++|+ +.|.+
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~-~~~~~ 42 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVV-NADIH 42 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEE-EEeCC
Confidence 478899999994 9999999999999999998 44543
No 386
>PRK06057 short chain dehydrogenase; Provisional
Probab=81.33 E-value=2.7 Score=39.68 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=30.2
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
++|++|.|.|. |.+|.++++.|.++|++|+.+ |.
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~-~r 39 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVG-DI 39 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE-eC
Confidence 78999999997 999999999999999999844 44
No 387
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.25 E-value=2.9 Score=39.15 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=29.1
Q ss_pred CCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEEEC
Q 015287 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSD 237 (410)
Q Consensus 204 l~g~~vaIqG-fGnVG~~~a~~L~~~GakvVaVsD 237 (410)
++++++.|.| .|.+|+++++.|.++|++|+.+.+
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~ 37 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYH 37 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence 5678999998 599999999999999999984433
No 388
>PLN02427 UDP-apiose/xylose synthase
Probab=81.23 E-value=2.6 Score=42.84 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=31.3
Q ss_pred CCCCCCCeEEEEcc-ChHHHHHHHHHHHC-CCEEEEEE
Q 015287 201 GKSISNMKFAIQGF-GNVGSWAAKFFHEH-GGKVVAVS 236 (410)
Q Consensus 201 g~~l~g~~vaIqGf-GnVG~~~a~~L~~~-GakvVaVs 236 (410)
|+.++.+||.|.|. |-+|+++++.|.++ |.+|+++.
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~ 46 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALD 46 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence 56688899999995 99999999999988 58999774
No 389
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=81.22 E-value=2.4 Score=43.16 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=29.1
Q ss_pred CCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEE
Q 015287 205 SNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 205 ~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 236 (410)
++++|.|.|. |-||+++++.|.++|.+|++++
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~ 52 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASD 52 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEE
Confidence 5689999996 9999999999999999999774
No 390
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=81.06 E-value=6.4 Score=33.48 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=49.8
Q ss_pred CCCchhHHHHHHHHHHHHH-HhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeC
Q 015287 180 GREAATGLGVFFATEALLA-EHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKN 244 (410)
Q Consensus 180 gr~~aTg~Gv~~~~~~~~~-~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~ 244 (410)
|....|-|....+.+.+++ .....++...|.+-|+|.=-..+.+.|...|.+|+-|.|....-||
T Consensus 36 g~rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~I~D~T~iphN 101 (108)
T TIGR03632 36 GSKKSTPYAAQLAAEDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTSIKDVTPIPHN 101 (108)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence 4456777777777776665 2335577888999999986677779999999999999998765554
No 391
>PRK07236 hypothetical protein; Provisional
Probab=80.99 E-value=2.9 Score=42.50 Aligned_cols=41 Identities=20% Similarity=0.130 Sum_probs=34.0
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNP 245 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~ 245 (410)
++..+|+|+|.|-+|..+|..|.+.|.+|+ |-|......++
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~-v~E~~~~~~~~ 44 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVD-VFERSPTELDG 44 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEE-EEecCCCCcCC
Confidence 456799999999999999999999999987 88865433443
No 392
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=80.83 E-value=2.8 Score=39.70 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=29.7
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEE
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 235 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 235 (410)
+++|+++.|.|. |.+|+.+++.|.++|++|+++
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~ 40 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGI 40 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEe
Confidence 478999999995 899999999999999999865
No 393
>PRK07806 short chain dehydrogenase; Provisional
Probab=80.81 E-value=3.5 Score=38.60 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=29.9
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEE
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 236 (410)
+++++++.|.|. |.+|+++++.|.++|++|++++
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~ 37 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNY 37 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 367899999995 9999999999999999998654
No 394
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.81 E-value=2.8 Score=40.43 Aligned_cols=34 Identities=15% Similarity=0.312 Sum_probs=29.8
Q ss_pred CCCCeEEEEccC---hHHHHHHHHHHHCCCEEEEEECC
Q 015287 204 ISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 204 l~g~~vaIqGfG---nVG~~~a~~L~~~GakvVaVsD~ 238 (410)
++|+++.|.|.+ .+|+.+|+.|.+.|++|+ +.+.
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vi-l~~r 40 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELA-FTYQ 40 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEE-EEec
Confidence 788999999986 699999999999999987 5554
No 395
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=80.76 E-value=3.2 Score=39.15 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=31.4
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 202 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 202 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
.+++++++.|.|. |.+|+.+++.|.++|++|+. .+.+
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~-~~r~ 44 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLV-NGRN 44 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEE-EeCC
Confidence 3478999999995 99999999999999999984 5553
No 396
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=80.72 E-value=2.9 Score=39.48 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=30.5
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+++++++.|.|. |.+|+++++.|.++|++|+ +.|.
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~-~~~r 40 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVV-LVDR 40 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence 378899999996 8999999999999999998 4555
No 397
>PRK06172 short chain dehydrogenase; Provisional
Probab=80.70 E-value=2.9 Score=39.32 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=30.7
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
.++++++.|.|. |.+|+.+++.|.++|++|+. .+.+
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~-~~r~ 40 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVV-ADRD 40 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEE-EeCC
Confidence 478899999995 89999999999999999884 4553
No 398
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=80.68 E-value=3.2 Score=39.14 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=30.8
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
+++++++.|.|. |.+|+.+++.|.++|++|+ +.|.+
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vv-l~~r~ 42 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEII-INDIT 42 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEE-EEcCC
Confidence 478899999984 8999999999999999998 55543
No 399
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=80.66 E-value=3.6 Score=39.03 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=30.8
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEEC
Q 015287 202 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSD 237 (410)
Q Consensus 202 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 237 (410)
.+++++++.|.|. |.+|+.+++.|.++|++||.++.
T Consensus 3 ~~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~ 39 (261)
T PRK08936 3 SDLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYR 39 (261)
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 3578999999995 89999999999999999985443
No 400
>PRK06398 aldose dehydrogenase; Validated
Probab=80.66 E-value=3.1 Score=39.69 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEE
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 235 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 235 (410)
+++|+++.|.|. |.+|+.+++.|.++|++|+.+
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~ 36 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINF 36 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 478999999995 899999999999999999854
No 401
>PRK12746 short chain dehydrogenase; Provisional
Probab=80.65 E-value=3.3 Score=38.87 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=28.8
Q ss_pred CCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEE
Q 015287 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 235 (410)
Q Consensus 203 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakvVaV 235 (410)
+++++++.|.| .|.+|+++++.|.++|++|+.+
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~ 36 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGALVAIH 36 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 46788999999 5999999999999999998743
No 402
>PRK06196 oxidoreductase; Provisional
Probab=80.62 E-value=3.1 Score=40.98 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=30.8
Q ss_pred CCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEE
Q 015287 201 GKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 235 (410)
Q Consensus 201 g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 235 (410)
..+++++++.|.|. |.+|+++++.|.++|++|+.+
T Consensus 21 ~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~ 56 (315)
T PRK06196 21 GHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVP 56 (315)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 34578999999996 899999999999999999854
No 403
>PRK07831 short chain dehydrogenase; Provisional
Probab=80.59 E-value=2.8 Score=39.74 Aligned_cols=34 Identities=32% Similarity=0.487 Sum_probs=29.4
Q ss_pred CCCCeEEEEcc-C-hHHHHHHHHHHHCCCEEEEEECC
Q 015287 204 ISNMKFAIQGF-G-NVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 204 l~g~~vaIqGf-G-nVG~~~a~~L~~~GakvVaVsD~ 238 (410)
++++++.|.|. | .+|+.+++.|.++|++|+ +.|.
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~-~~~~ 50 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVV-ISDI 50 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEE-EEeC
Confidence 67899999997 6 699999999999999987 5554
No 404
>PRK05875 short chain dehydrogenase; Provisional
Probab=80.56 E-value=3.2 Score=39.62 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEE
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 236 (410)
+++++++.|.|. |.+|+++++.|.++|++|+.++
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~ 38 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVG 38 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 478899999996 8999999999999999988553
No 405
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=80.55 E-value=3 Score=39.05 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=28.5
Q ss_pred CCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEE
Q 015287 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 235 (410)
Q Consensus 204 l~g~~vaIqG-fGnVG~~~a~~L~~~GakvVaV 235 (410)
++++++.|.| .|.+|+++++.|.++|++|+.+
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~ 34 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIA 34 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 5678999999 5999999999999999999854
No 406
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.50 E-value=3 Score=39.90 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=30.4
Q ss_pred CCCCCeEEEEcc---ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF---GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf---GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+++|++++|.|. +.+|..+|+.|.++|++|+ +++.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~-~~~r 41 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLV-FTYA 41 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEE-EecC
Confidence 478999999997 5899999999999999988 4554
No 407
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.49 E-value=2.4 Score=41.47 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=28.2
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
++|+|.|.|.+|..+|..|...|..|+ +.|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~-~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVV-MVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceE-EEeCC
Confidence 479999999999999999999999988 55654
No 408
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.47 E-value=3.2 Score=40.92 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=31.4
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 202 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 202 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
.+++|+++.|.|. |.+|+.+|+.|.++|++|| +.|.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv-~~~~ 44 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVV-VNDV 44 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EecC
Confidence 4588999999985 8899999999999999998 5564
No 409
>PRK07825 short chain dehydrogenase; Provisional
Probab=80.38 E-value=3.3 Score=39.60 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=29.9
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+++++++.|.|. |.+|+.+++.|.++|++|+ +++.
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~-~~~r 37 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVA-IGDL 37 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEEC
Confidence 467889999996 9999999999999999987 4444
No 410
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.31 E-value=2.6 Score=41.75 Aligned_cols=31 Identities=39% Similarity=0.568 Sum_probs=27.6
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
++|+|.|.|++|+.+|..|.+.|.+|+ +.|.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~-~~d~ 35 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVV-LIDV 35 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEE-EEEC
Confidence 589999999999999999999999988 5565
No 411
>PRK09620 hypothetical protein; Provisional
Probab=80.28 E-value=3.3 Score=39.82 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=29.0
Q ss_pred CCCCeEEEEcc-----------------ChHHHHHHHHHHHCCCEEEEEEC
Q 015287 204 ISNMKFAIQGF-----------------GNVGSWAAKFFHEHGGKVVAVSD 237 (410)
Q Consensus 204 l~g~~vaIqGf-----------------GnVG~~~a~~L~~~GakvVaVsD 237 (410)
++|++|.|.+. |-+|+++|+.|.++|++|+.+..
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHG 51 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 46888888854 88999999999999999997754
No 412
>PRK08265 short chain dehydrogenase; Provisional
Probab=80.26 E-value=3.4 Score=39.39 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=30.5
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+++++++.|.|. |.+|+.+++.|.++|++|+ +.|.
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~-~~~r 38 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVA-IVDI 38 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEeC
Confidence 468899999995 9999999999999999988 5555
No 413
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=80.16 E-value=3.1 Score=39.96 Aligned_cols=36 Identities=25% Similarity=0.221 Sum_probs=31.6
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
++++++|.|+|.|.|+..=++.|.+.|++|+-||-.
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 477999999999999999999999999999866643
No 414
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=80.13 E-value=1.9 Score=42.79 Aligned_cols=43 Identities=33% Similarity=0.456 Sum_probs=34.4
Q ss_pred HHHHhCC-----CCCCCeEEEEccChHHHHHHHHHHHCCC-EEEEEECCC
Q 015287 196 LLAEHGK-----SISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDIT 239 (410)
Q Consensus 196 ~~~~~g~-----~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kvVaVsD~~ 239 (410)
+|+++|+ .++.+.|+|+|.|.||+-+|++|.+.|. |++ .-|-+
T Consensus 67 ALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLl-LfDYD 115 (422)
T KOG2336|consen 67 ALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLL-LFDYD 115 (422)
T ss_pred HHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEE-Eeecc
Confidence 4566674 3778899999999999999999999995 555 56644
No 415
>PLN02253 xanthoxin dehydrogenase
Probab=80.12 E-value=3.3 Score=39.73 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=30.2
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
.++++++.|.|. |.+|+++++.|.++|++|+. .|.
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~-~~~ 50 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCI-VDL 50 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEE-EeC
Confidence 478899999995 89999999999999999984 454
No 416
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.04 E-value=2.4 Score=44.73 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=29.8
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
-++++|.|.|+|.-|..++++|. .|++|+ |+|.+
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~-~g~~v~-v~D~~ 37 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQ-NKYDVI-VYDDL 37 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHHh-CCCEEE-EECCC
Confidence 35789999999999999999999 599987 88843
No 417
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=79.94 E-value=3.1 Score=39.52 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=31.1
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
..++++|.|.|. |.+|+.+++.|.+.|++|++++..
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~ 50 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRD 50 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecC
Confidence 367889999995 999999999999999999877643
No 418
>PLN02712 arogenate dehydrogenase
Probab=79.92 E-value=2.8 Score=46.58 Aligned_cols=31 Identities=42% Similarity=0.659 Sum_probs=27.7
Q ss_pred CCCeEEEEccChHHHHHHHHHHHCCCEEEEE
Q 015287 205 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAV 235 (410)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~GakvVaV 235 (410)
+.++|+|+|+|++|+.+++.|.+.|.+|+++
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~ 81 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAH 81 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEE
Confidence 4478999999999999999999999998754
No 419
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=79.82 E-value=3.5 Score=38.09 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=29.4
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
++.++++.|.|. |.+|+.+++.|.++|++|+. .+.
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~-~~r 37 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVI-YDS 37 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEE-EeC
Confidence 356789999995 99999999999999999764 444
No 420
>PRK07856 short chain dehydrogenase; Provisional
Probab=79.82 E-value=3.7 Score=38.71 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=30.8
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
+++++++.|.|. |.+|+.+++.|.++|++|+ +.+.+
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~-~~~r~ 39 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVV-VCGRR 39 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEeCC
Confidence 578999999995 8999999999999999998 44543
No 421
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=79.81 E-value=3.2 Score=37.04 Aligned_cols=31 Identities=29% Similarity=0.305 Sum_probs=27.6
Q ss_pred EEEEcc-ChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 209 FAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 209 vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
|+|.|. |.+|+.+++.|.+.|.+|++++-+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~ 32 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSP 32 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSG
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCc
Confidence 678895 9999999999999999999988653
No 422
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=79.73 E-value=2.9 Score=41.53 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=30.5
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEE
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 236 (410)
++++++|.|.|. |-+|+++++.|.++|.+|+++.
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~ 37 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGII 37 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEe
Confidence 478899999995 9999999999999999999764
No 423
>PRK06197 short chain dehydrogenase; Provisional
Probab=79.72 E-value=2.9 Score=40.89 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=30.2
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEE
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 236 (410)
++++++|.|.|. |.+|+++|+.|.++|++|+.++
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~ 47 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAV 47 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 478999999995 9999999999999999998554
No 424
>PLN02214 cinnamoyl-CoA reductase
Probab=79.68 E-value=3.1 Score=41.71 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=30.3
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEEC
Q 015287 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSD 237 (410)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 237 (410)
+++++|.|.|. |-+|+++++.|.++|.+|++++-
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r 42 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVR 42 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence 57889999997 99999999999999999987653
No 425
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=79.67 E-value=5.8 Score=40.38 Aligned_cols=96 Identities=18% Similarity=0.220 Sum_probs=53.1
Q ss_pred CeEEEEcc-ChHHHHHHHHHHHC-CCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCC--eeecCCccccccc
Q 015287 207 MKFAIQGF-GNVGSWAAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGG--NAMDLNDLLVHEC 282 (410)
Q Consensus 207 ~~vaIqGf-GnVG~~~a~~L~~~-GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~--~~i~~~~ll~~~~ 282 (410)
++|+|.|. |-||+.++++|.++ ..+++++.+++.. .|-.+.+.. ..+...... ...+.+++.. +|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~s----agk~~~~~~------~~l~~~~~~~~~~~~~~~~~~-~~ 69 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRES----AGKPVSEVH------PHLRGLVDLNLEPIDEEEIAE-DA 69 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchh----cCCChHHhC------ccccccCCceeecCCHHHhhc-CC
Confidence 47999998 99999999999876 6888877665421 121111110 101110000 1122334443 79
Q ss_pred ceEeecccCCcccccccccc-cc-eEEEecCCCC
Q 015287 283 DVLVPCALGGVLNKENAADV-KA-KFIIEAANHP 314 (410)
Q Consensus 283 DvliPaA~~~~I~~~na~~i-~a-kiIvEgAN~p 314 (410)
|+++-|. ++..+.+-+..+ .+ +.|++-++..
T Consensus 70 DvVf~al-P~~~s~~~~~~~~~~G~~VIDlS~~f 102 (346)
T TIGR01850 70 DVVFLAL-PHGVSAELAPELLAAGVKVIDLSADF 102 (346)
T ss_pred CEEEECC-CchHHHHHHHHHHhCCCEEEeCChhh
Confidence 9999885 555666555544 22 3445444433
No 426
>PRK07062 short chain dehydrogenase; Provisional
Probab=79.60 E-value=3.6 Score=39.06 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=31.1
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 202 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 202 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
.+++|+++.|.|. |.+|+.+++.|.++|++|+ +.+.
T Consensus 4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~-~~~r 40 (265)
T PRK07062 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVA-ICGR 40 (265)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEE-EEeC
Confidence 4588999999996 8899999999999999998 4554
No 427
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=79.57 E-value=3.5 Score=38.97 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=29.6
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
++++++.|.|. |.+|+++++.|.++|++|+. .|.
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~-~~r 38 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGARVVI-ADI 38 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEE-EcC
Confidence 67889999995 99999999999999999984 454
No 428
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=79.45 E-value=3.5 Score=40.56 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=30.5
Q ss_pred CCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEEECC
Q 015287 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 204 l~g~~vaIqG-fGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
-.|++|.|.| .|-+|+++++.|.++|.+|+++.+.
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRD 38 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 3578999999 5999999999999999999877654
No 429
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=79.43 E-value=3.5 Score=39.19 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=29.9
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+++++++.|.|. |.+|+.+++.|.++|++|+. .|.
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~-~~r 37 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVAV-LDK 37 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEE-EeC
Confidence 367899999985 88999999999999999984 454
No 430
>PRK12939 short chain dehydrogenase; Provisional
Probab=79.37 E-value=3.7 Score=38.24 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEE
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 235 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 235 (410)
.++++++.|.|. |.+|+++++.|.++|++|+.+
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~ 37 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFN 37 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEE
Confidence 367899999995 999999999999999999865
No 431
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=79.32 E-value=2.8 Score=45.28 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=30.7
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
..|++|+|+|.|.+|..+|..|.++|++|+ |.|.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~-v~e~ 168 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVT-IFEA 168 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEE-EEec
Confidence 468999999999999999999999999987 6774
No 432
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=79.25 E-value=2.9 Score=40.87 Aligned_cols=32 Identities=25% Similarity=0.444 Sum_probs=28.4
Q ss_pred CCCeEEEEc-cChHHHHHHHHHHHCCCEEEEEE
Q 015287 205 SNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 205 ~g~~vaIqG-fGnVG~~~a~~L~~~GakvVaVs 236 (410)
++++|.|.| .|-+|+++++.|.++|.+|+++.
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~ 35 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATV 35 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEE
Confidence 468999999 59999999999999999998664
No 433
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=79.14 E-value=2.9 Score=41.58 Aligned_cols=32 Identities=31% Similarity=0.291 Sum_probs=28.3
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
++|+|+|.|.+|..+|..|.++|.+|+ +.|.+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~-v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVR-LWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeE-EEeCC
Confidence 479999999999999999999999988 55654
No 434
>PRK07035 short chain dehydrogenase; Provisional
Probab=79.13 E-value=3.7 Score=38.55 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=30.4
Q ss_pred CCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+++++++.|.| .|.+|.++++.|.++|++|+.+ +.
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~-~r 40 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVS-SR 40 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE-eC
Confidence 47889999998 5999999999999999999855 44
No 435
>PRK08264 short chain dehydrogenase; Validated
Probab=79.05 E-value=3.7 Score=38.18 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=29.3
Q ss_pred CCCCCeEEEEc-cChHHHHHHHHHHHCCC-EEEEEECC
Q 015287 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGG-KVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqG-fGnVG~~~a~~L~~~Ga-kvVaVsD~ 238 (410)
+++++++.|.| .|.+|+++++.|.++|+ +|+. .+.
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~-~~r 39 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYA-AAR 39 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEE-Eec
Confidence 36788999999 49999999999999999 8774 444
No 436
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=79.05 E-value=6.2 Score=40.95 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=27.1
Q ss_pred CeEEEEc-cChHHHHHHHHHHHC--CCEEEEEE-CC
Q 015287 207 MKFAIQG-FGNVGSWAAKFFHEH--GGKVVAVS-DI 238 (410)
Q Consensus 207 ~~vaIqG-fGnVG~~~a~~L~~~--GakvVaVs-D~ 238 (410)
++|+|.| .|++|....+.+.+. ..+|++++ ++
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~ 37 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGK 37 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCC
Confidence 6899999 799999999888653 68999998 54
No 437
>PRK05872 short chain dehydrogenase; Provisional
Probab=79.01 E-value=3.8 Score=40.04 Aligned_cols=35 Identities=23% Similarity=0.446 Sum_probs=30.6
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+++|+++.|.|. |.+|..+++.|.++|++|+ +.+.
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~-~~~r 41 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGAKLA-LVDL 41 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence 478999999995 9999999999999999987 4554
No 438
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=79.00 E-value=5 Score=41.74 Aligned_cols=91 Identities=15% Similarity=0.187 Sum_probs=58.1
Q ss_pred CCCCeEEEEcc----------ChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeec
Q 015287 204 ISNMKFAIQGF----------GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMD 273 (410)
Q Consensus 204 l~g~~vaIqGf----------GnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~ 273 (410)
++|++|+|-|. -.-...+++.|.++|++|++ |||.... +.+. .|++....+
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~a--------YDP~a~~-----~~~~------~~~~~~~~~ 368 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIA--------YDPVAME-----NAFR------NFPDVELES 368 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEE--------ECchhhH-----HHHh------cCCCceEeC
Confidence 99999999996 45677889999999999983 6666432 1111 223233333
Q ss_pred CCcccccccceEeecccCCcccccccc--cccceEEEecCCC
Q 015287 274 LNDLLVHECDVLVPCALGGVLNKENAA--DVKAKFIIEAANH 313 (410)
Q Consensus 274 ~~~ll~~~~DvliPaA~~~~I~~~na~--~i~akiIvEgAN~ 313 (410)
..+-.-..+|+++-+.--..+.+-+-. .++.++|+.|-|.
T Consensus 369 ~~~~~~~~aDaivi~tew~ef~~~d~~~~~m~~~~v~DgRni 410 (414)
T COG1004 369 DAEEALKGADAIVINTEWDEFRDLDFEKLLMKTPVVIDGRNI 410 (414)
T ss_pred CHHHHHhhCCEEEEeccHHHHhccChhhhhccCCEEEecccc
Confidence 323334578999888644443322211 4678899998885
No 439
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=78.98 E-value=2.8 Score=38.33 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=27.7
Q ss_pred eEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
+|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999998644488865
No 440
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=78.94 E-value=4.1 Score=43.21 Aligned_cols=164 Identities=15% Similarity=0.131 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCee-ecCCccccc--ccceEeecccCCc
Q 015287 217 VGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNA-MDLNDLLVH--ECDVLVPCALGGV 293 (410)
Q Consensus 217 VG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~-i~~~~ll~~--~~DvliPaA~~~~ 293 (410)
+|+++|+-|.++|.+|+ |-|.+ .+...+..+..+. + .+... -+++++.+. .+|+++-|-..+.
T Consensus 1 MG~~mA~nL~~~G~~V~-v~nrt----------~~~~~~l~~~~g~--~-~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~ 66 (459)
T PRK09287 1 MGKNLALNIASHGYTVA-VYNRT----------PEKTDEFLAEEGK--G-KKIVPAYTLEEFVASLEKPRKILLMVKAGA 66 (459)
T ss_pred CcHHHHHHHHhCCCeEE-EECCC----------HHHHHHHHHhhCC--C-CCeEeeCCHHHHHhhCCCCCEEEEECCCch
Confidence 48899999999999987 76764 3444444432111 0 01111 234455532 5898887754443
Q ss_pred cccccc----ccc-cceEEEecCCCC--CCHHHHHHHHhCCceEecccc------------ccccCceehhHHHhhh---
Q 015287 294 LNKENA----ADV-KAKFIIEAANHP--TDPEADEILSKKGVVILPDIY------------ANSGGVTVSYFEWVQN--- 351 (410)
Q Consensus 294 I~~~na----~~i-~akiIvEgAN~p--~t~~A~~iL~~rGI~v~PD~l------------aNaGGVi~s~~E~~qn--- 351 (410)
..++.. +.+ .-++|+++.|.- .|.+..+.|+++||.++=--+ .-.||=- ..|+.++.
T Consensus 67 ~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG~~-~a~~~~~piL~ 145 (459)
T PRK09287 67 PVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGGQK-EAYELVAPILE 145 (459)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeCCH-HHHHHHHHHHH
Confidence 333222 223 346999999864 355566789999999872111 1122211 12233322
Q ss_pred -cc-----c---CCC--------CHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH
Q 015287 352 -IQ-----G---FMW--------EEEKVNHELKRYMMSAFKDIKTMCQ-THNCNLRMGAFTL 395 (410)
Q Consensus 352 -~~-----~---~~w--------~~~~v~~~l~~~m~~~~~~v~~~a~-~~~~~~r~aA~~~ 395 (410)
+. + ..| --+-|+..++..+...+.+.+...+ ..++++.+.+.++
T Consensus 146 ~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~ 207 (459)
T PRK09287 146 KIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVF 207 (459)
T ss_pred HHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 10 1 011 1234677788888899999999998 4799887766554
No 441
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=78.92 E-value=3.5 Score=38.44 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=28.3
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEE
Q 015287 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 235 (410)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 235 (410)
++++++.|.|. |.+|+.+++.|.++|++|+.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~ 33 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVF 33 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEe
Confidence 47889999995 999999999999999998854
No 442
>PRK12937 short chain dehydrogenase; Provisional
Probab=78.91 E-value=4 Score=37.92 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEE
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 236 (410)
.++++++.|.|. |.+|+++++.|.++|++++.+.
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~ 36 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNY 36 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEec
Confidence 367889999985 9999999999999999998544
No 443
>PRK08226 short chain dehydrogenase; Provisional
Probab=78.90 E-value=3.7 Score=38.86 Aligned_cols=35 Identities=26% Similarity=0.543 Sum_probs=29.9
Q ss_pred CCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
.++++++.|.| .|.+|+++++.|.++|++|+.+ +.
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~-~r 38 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGANLILL-DI 38 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEe-cC
Confidence 36789999998 5999999999999999998844 54
No 444
>PRK06114 short chain dehydrogenase; Provisional
Probab=78.86 E-value=3.8 Score=38.71 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=30.9
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
+++++++.|.|. |.+|+.+|+.|.++|++|+ +.|.+
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~-~~~r~ 41 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVA-LFDLR 41 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEeCC
Confidence 478999999984 8999999999999999998 55653
No 445
>PRK09135 pteridine reductase; Provisional
Probab=78.85 E-value=3.6 Score=38.21 Aligned_cols=33 Identities=24% Similarity=0.172 Sum_probs=28.9
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEE
Q 015287 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 236 (410)
.+++++.|.|. |.+|+++++.|.++|++|++++
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~ 37 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHY 37 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEc
Confidence 45688999995 9999999999999999998664
No 446
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.85 E-value=3.8 Score=41.56 Aligned_cols=43 Identities=23% Similarity=0.378 Sum_probs=37.8
Q ss_pred HHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 196 LLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 196 ~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
.|++.|.. .|+++.|.|.|.+|.-+.++-...|.+|++|+-++
T Consensus 173 pLk~~g~~-pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~ 215 (360)
T KOG0023|consen 173 PLKRSGLG-PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSS 215 (360)
T ss_pred hhHHcCCC-CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCc
Confidence 56677877 89999999999999999999999999999888764
No 447
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=78.78 E-value=2.6 Score=41.96 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=28.2
Q ss_pred CCCeEEEEccChHHHHHHHHHHHCCCEEEEEE
Q 015287 205 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVs 236 (410)
.-++|+|.|.|.+|..+|..|++.|..|+-++
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~ 35 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLL 35 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEE
Confidence 44789999999999999999999999888554
No 448
>PRK07577 short chain dehydrogenase; Provisional
Probab=78.78 E-value=3.8 Score=37.90 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=28.1
Q ss_pred CCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEE
Q 015287 205 SNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 205 ~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 236 (410)
+++++.|.|. |.+|+.+++.|.++|++|+.++
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~ 34 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIA 34 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 5688999985 9999999999999999998654
No 449
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.77 E-value=3 Score=43.52 Aligned_cols=31 Identities=35% Similarity=0.474 Sum_probs=28.5
Q ss_pred eEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
+|.|.|.|..|..+|++|.++|++|. ++|.+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~-~~D~~ 32 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVV-VSDRN 32 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEE-EECCC
Confidence 68999999999999999999999987 78865
No 450
>PRK07576 short chain dehydrogenase; Provisional
Probab=78.77 E-value=3.8 Score=39.17 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=30.6
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+++++++.|.|. |.+|+.+++.|.++|++|+.+ |.
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~-~r 41 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVA-SR 41 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE-eC
Confidence 478899999996 899999999999999999854 54
No 451
>PRK10537 voltage-gated potassium channel; Provisional
Probab=78.77 E-value=12 Score=38.94 Aligned_cols=102 Identities=12% Similarity=0.111 Sum_probs=58.8
Q ss_pred CCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCCCCCCHHHHHHHHHhCCCcccCCCCeeecCCccc----ccc
Q 015287 206 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL----VHE 281 (410)
Q Consensus 206 g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~~~~~~i~~~~ll----~~~ 281 (410)
..+++|.|+|.+|+.+++.|.++|..++.| |.+. .+ +...++-.+ + -+.. +.++.| -.+
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVI-d~d~---------~~---~~~~~g~~v--I-~GD~-td~e~L~~AgI~~ 302 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVI-VPLG---------LE---HRLPDDADL--I-PGDS-SDSAVLKKAGAAR 302 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEE-ECch---------hh---hhccCCCcE--E-EeCC-CCHHHHHhcCccc
Confidence 457999999999999999999999888744 4320 11 111111001 0 0111 122333 136
Q ss_pred cceEeecccCCcc---cccccccc--cceEEEecCCCCCCHHHHHHHHhCCc
Q 015287 282 CDVLVPCALGGVL---NKENAADV--KAKFIIEAANHPTDPEADEILSKKGV 328 (410)
Q Consensus 282 ~DvliPaA~~~~I---~~~na~~i--~akiIvEgAN~p~t~~A~~iL~~rGI 328 (410)
|+.++-+.-.+.. ...+++++ ++|+|+..-| ++..+.|++.|+
T Consensus 303 A~aVI~~t~dD~~Nl~ivL~ar~l~p~~kIIa~v~~----~~~~~~L~~~Ga 350 (393)
T PRK10537 303 ARAILALRDNDADNAFVVLAAKEMSSDVKTVAAVND----SKNLEKIKRVHP 350 (393)
T ss_pred CCEEEEcCCChHHHHHHHHHHHHhCCCCcEEEEECC----HHHHHHHHhcCC
Confidence 7888766533222 22234444 4688887654 566778888886
No 452
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=78.73 E-value=9.8 Score=38.29 Aligned_cols=36 Identities=19% Similarity=0.045 Sum_probs=29.5
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
.+|++|+|.|.|++|..+|..|.+.|.+-|.|.+..
T Consensus 170 ~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 170 VEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 458999999999999999999988998733466544
No 453
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=78.70 E-value=3.9 Score=38.71 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=30.4
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+++++++.|.|. |.+|..+++.|.++|++|+ +.+.
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~-~~~~ 47 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADII-ITTH 47 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence 478999999995 9999999999999999998 4444
No 454
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=78.68 E-value=2.3 Score=47.61 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=29.1
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
++|+|+|.|.+|..+|..+...|..|+ +.|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~-l~d~~ 345 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIV-MKDIN 345 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEE-EEeCC
Confidence 579999999999999999999999998 77765
No 455
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=78.60 E-value=3.9 Score=38.93 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=30.3
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+++++++.|.|. |.+|..+++.|.++|++|+ +.+.
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv-~~~~ 42 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIV-FNDI 42 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEE-EEeC
Confidence 578899999885 8999999999999999988 4454
No 456
>PRK05866 short chain dehydrogenase; Provisional
Probab=78.56 E-value=4.1 Score=39.90 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=30.8
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 202 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 202 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
..++++++.|.|. |.+|+.+++.|.++|++|+. .+.
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~-~~R 72 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGATVVA-VAR 72 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE-EEC
Confidence 4478899999995 99999999999999999984 444
No 457
>PRK07814 short chain dehydrogenase; Provisional
Probab=78.55 E-value=3.8 Score=39.06 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=30.5
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
+++++++.|.|. |.+|.++++.|.++|++|+. .+.+
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~-~~r~ 43 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLI-AART 43 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEE-EeCC
Confidence 378899999996 78999999999999999984 4553
No 458
>PRK07063 short chain dehydrogenase; Provisional
Probab=78.50 E-value=3.9 Score=38.69 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=30.3
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
.++++++.|.|. |.+|+.+++.|.++|++|+ +.|.
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv-~~~r 39 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVA-LADL 39 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence 378899999995 8999999999999999988 4554
No 459
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.46 E-value=3.9 Score=37.92 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=30.4
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
+++++++.|.|. |.+|+++++.|.++|++|+. .+.+
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~-~~r~ 38 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYG-VDKQ 38 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEE-EeCC
Confidence 477899999984 99999999999999999984 4543
No 460
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.43 E-value=4.4 Score=37.83 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=29.8
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+++++++.|.|. |.+|+++++.|.++|++++.+.+.
T Consensus 3 ~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (252)
T PRK06077 3 SLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKK 39 (252)
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 357889999984 889999999999999998755443
No 461
>PRK07326 short chain dehydrogenase; Provisional
Probab=78.43 E-value=3.7 Score=38.01 Aligned_cols=34 Identities=21% Similarity=0.115 Sum_probs=29.0
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+.++++.|.|. |.+|+.+++.|.++|++|+.+ +.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~-~r 38 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAIT-AR 38 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEe-eC
Confidence 46789999985 999999999999999998854 44
No 462
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.38 E-value=4.7 Score=38.10 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=29.7
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEE
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 236 (410)
.++++++.|.|. |.+|+.+|+.|.++|++|+.+.
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~ 38 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLY 38 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 467899999985 9999999999999999998543
No 463
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=78.24 E-value=3.7 Score=38.92 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=29.4
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEE
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 235 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 235 (410)
+++++++.|.|. +.+|+.+|+.|.++|++|+.+
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~ 38 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGV 38 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 478999999995 899999999999999999854
No 464
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=78.22 E-value=1.3 Score=49.69 Aligned_cols=32 Identities=31% Similarity=0.382 Sum_probs=29.2
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
++|+|+|.|.+|+.+|..+...|..|+ +.|.+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~-l~d~~ 367 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTV-LKDAT 367 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEE-EecCC
Confidence 579999999999999999999999998 77765
No 465
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=78.19 E-value=4.8 Score=40.87 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=29.6
Q ss_pred CCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 205 SNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 205 ~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
.+++|.|.|. |-+|+|+++.|.++|++|.|....
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~ 39 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRD 39 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcC
Confidence 6789999995 999999999999999999865443
No 466
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=78.11 E-value=2.8 Score=40.84 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=22.9
Q ss_pred CCCeEEEEccChHHHHHHHHHHHCC
Q 015287 205 SNMKFAIQGFGNVGSWAAKFFHEHG 229 (410)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~G 229 (410)
+..+|.|.|.|.+|+.+++.|.+.|
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G 34 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLH 34 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHcc
Confidence 5689999999999999999999875
No 467
>PRK06500 short chain dehydrogenase; Provisional
Probab=78.08 E-value=3.7 Score=38.27 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=29.7
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
++++++.|.|. |.+|+++++.|.++|++|+.+ +.
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~-~r 38 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAIT-GR 38 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe-cC
Confidence 67889999995 999999999999999999844 44
No 468
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.07 E-value=4.5 Score=37.31 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=29.7
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
++.++|.|.|. |.+|+.+++.|.++|++|+.++..
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 45679999985 999999999999999998765554
No 469
>PRK06182 short chain dehydrogenase; Validated
Probab=78.06 E-value=4 Score=39.05 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=27.8
Q ss_pred CCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEE
Q 015287 205 SNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 235 (410)
Q Consensus 205 ~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 235 (410)
+++++.|.|. |.+|+.+++.|.++|++|+++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~ 33 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGA 33 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 5789999995 999999999999999999854
No 470
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=78.04 E-value=6.7 Score=39.48 Aligned_cols=42 Identities=29% Similarity=0.425 Sum_probs=33.8
Q ss_pred HHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECC
Q 015287 197 LAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 197 ~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+...+....|.+|.|.|.|.+|..+++++...|++++.+++.
T Consensus 172 l~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~ 213 (357)
T PLN02514 172 LSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSS 213 (357)
T ss_pred HHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 334444457889999999999999999999999998866554
No 471
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=77.91 E-value=3.8 Score=42.99 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=31.7
Q ss_pred hCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEE
Q 015287 200 HGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 200 ~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 236 (410)
+|..-+.+||.|.|. |-||+++++.|.++|.+|+++.
T Consensus 114 ~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ld 151 (436)
T PLN02166 114 VGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVID 151 (436)
T ss_pred cccccCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEe
Confidence 355567889999995 9999999999999999999763
No 472
>PRK06914 short chain dehydrogenase; Provisional
Probab=77.87 E-value=4.1 Score=39.01 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=28.0
Q ss_pred CCCeEEEEc-cChHHHHHHHHHHHCCCEEEEEE
Q 015287 205 SNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 205 ~g~~vaIqG-fGnVG~~~a~~L~~~GakvVaVs 236 (410)
+++++.|.| .|.+|+.+++.|.++|++|++++
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~ 34 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATM 34 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEe
Confidence 567889988 49999999999999999998664
No 473
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=77.68 E-value=4.4 Score=35.76 Aligned_cols=32 Identities=47% Similarity=0.623 Sum_probs=26.2
Q ss_pred CeEEEEcc-ChHHHHHHHHHHHCCC--EEEEEECCC
Q 015287 207 MKFAIQGF-GNVGSWAAKFFHEHGG--KVVAVSDIT 239 (410)
Q Consensus 207 ~~vaIqGf-GnVG~~~a~~L~~~Ga--kvVaVsD~~ 239 (410)
++|+|.|. |+||+++|..|...+. +++ +-|.+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~-L~D~~ 35 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIV-LIDIN 35 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEE-EEESS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceE-EeccC
Confidence 48999999 9999999999987663 565 66764
No 474
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=77.64 E-value=3.5 Score=41.18 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=30.7
Q ss_pred CCCCCCCeEEEEcc---ChHHHHHHHHHHHCCCEEEE
Q 015287 201 GKSISNMKFAIQGF---GNVGSWAAKFFHEHGGKVVA 234 (410)
Q Consensus 201 g~~l~g~~vaIqGf---GnVG~~~a~~L~~~GakvVa 234 (410)
+.+++|+++.|.|. ..+|..+|+.|++.|++||.
T Consensus 4 ~~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~ 40 (303)
T PLN02730 4 PIDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV 40 (303)
T ss_pred CcCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE
Confidence 45689999999999 67999999999999999985
No 475
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=77.56 E-value=5 Score=39.78 Aligned_cols=115 Identities=14% Similarity=0.208 Sum_probs=64.2
Q ss_pred eEEEEcc-ChHHHHHHHHHHHCCCEEEEE-ECCCCceeCCCCCCHHHHHHHHHhCCCcccC-CCCeeecCCcccccccc-
Q 015287 208 KFAIQGF-GNVGSWAAKFFHEHGGKVVAV-SDITGAIKNPNGIDVPALLKYKKSNKSLNDF-QGGNAMDLNDLLVHECD- 283 (410)
Q Consensus 208 ~vaIqGf-GnVG~~~a~~L~~~GakvVaV-sD~~G~i~~~~GlDi~~l~~~~~~~g~v~~~-~~~~~i~~~~ll~~~~D- 283 (410)
+|+|-|+ |++|+.+++.+.+.+..+|+. .|..+ .|-|+.++... .+.-. |....-+.+++++..+|
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~-----~~~~~~~~~g~-----~v~v~~~~~~~~~l~~~~~~~~d~ 71 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEE-----EAENEAEVAGK-----EILLHGPSEREARIGEVFAKYPEL 71 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccc-----cccchhhhccc-----ceeeeccccccccHHHHHhhcCCE
Confidence 7899996 999999999998899999986 44432 34454444221 11100 11111122345555588
Q ss_pred eEeecccCCccccccccc---ccceEEEecCCCCCCHH-HHHHHHh--CCceEecccc
Q 015287 284 VLVPCALGGVLNKENAAD---VKAKFIIEAANHPTDPE-ADEILSK--KGVVILPDIY 335 (410)
Q Consensus 284 vliPaA~~~~I~~~na~~---i~akiIvEgAN~p~t~~-A~~iL~~--rGI~v~PD~l 335 (410)
|+|.-..+..+. +|+.. -+..+|++= =+ .|++ .+++.+. -++++.|-+.
T Consensus 72 VvIDFT~P~~~~-~n~~~~~~~gv~~ViGT-TG-~~~~~~~~l~~~~~i~~l~apNfS 126 (275)
T TIGR02130 72 ICIDYTHPSAVN-DNAAFYGKHGIPFVMGT-TG-GDREALAKLVADAKHPAVIAPNMA 126 (275)
T ss_pred EEEECCChHHHH-HHHHHHHHCCCCEEEcC-CC-CCHHHHHHHHHhcCCCEEEECccc
Confidence 998877655543 23333 355666643 23 3443 3333332 4566667653
No 476
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.54 E-value=3.8 Score=39.79 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=30.1
Q ss_pred CCCCeEEEEccC---hHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfG---nVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
++++++.|.|.+ .+|+.+|+.|.+.|++|+ +++.+
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vi-l~~r~ 40 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELA-FTYLN 40 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEE-EEecC
Confidence 578999999984 799999999999999988 56653
No 477
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.48 E-value=4 Score=38.78 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=29.2
Q ss_pred CCCCCeEEEEccC---hHHHHHHHHHHHCCCEEEEE
Q 015287 203 SISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAV 235 (410)
Q Consensus 203 ~l~g~~vaIqGfG---nVG~~~a~~L~~~GakvVaV 235 (410)
.++|+++.|.|.. .+|+++|+.|.++|++|+.+
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~ 38 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFT 38 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEE
Confidence 4789999999974 79999999999999999843
No 478
>PRK05854 short chain dehydrogenase; Provisional
Probab=77.46 E-value=4.2 Score=40.25 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEE
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 235 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 235 (410)
+++|++++|.|. +.+|..+|+.|.++|++|+.+
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~ 44 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGAEVILP 44 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 588999999995 889999999999999999844
No 479
>PRK07478 short chain dehydrogenase; Provisional
Probab=77.40 E-value=4.4 Score=38.17 Aligned_cols=35 Identities=31% Similarity=0.426 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+++++++.|.|. |.+|..+++.|.++|++|+. .+.
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~-~~r 38 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVV-GAR 38 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEE-EeC
Confidence 467889999995 89999999999999999884 454
No 480
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.36 E-value=3.9 Score=39.13 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=29.2
Q ss_pred CCCCeEEEEccC---hHHHHHHHHHHHCCCEEEEEECC
Q 015287 204 ISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 204 l~g~~vaIqGfG---nVG~~~a~~L~~~GakvVaVsD~ 238 (410)
++|+++.|.|.+ .+|..+|+.|.++|++|+ +.+.
T Consensus 6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~-~~~r 42 (260)
T PRK06603 6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELW-FTYQ 42 (260)
T ss_pred cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEE-EEeC
Confidence 688999999986 499999999999999987 4454
No 481
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.29 E-value=3.5 Score=43.03 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=29.6
Q ss_pred CCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 206 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 206 g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
+-+|.|.|.|..|..+|++|+++|++|+ ++|.+
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~-~~D~~ 38 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFA-VMDSR 38 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEE-EEeCC
Confidence 3489999999999999999999999987 79964
No 482
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=77.19 E-value=8.8 Score=32.67 Aligned_cols=63 Identities=25% Similarity=0.334 Sum_probs=48.2
Q ss_pred CchhHHHHHHHHHHHHHH-hCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeC
Q 015287 182 EAATGLGVFFATEALLAE-HGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKN 244 (410)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~-~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~ 244 (410)
...|-+....+.+.+++. ....++...|.|-|+|.--..+.+.|...|.+|+-|.|....-||
T Consensus 38 rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~I~D~T~iphn 101 (110)
T PF00411_consen 38 RKSTPYAAQQAAEKIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVSITDVTPIPHN 101 (110)
T ss_dssp CGSSHHHHHHHHHHHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEEEEEETT--SS
T ss_pred cccCHHHHHHHHHHHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEEEEeecCCCCC
Confidence 356777777777776663 344567788899999998889999999999999999998765443
No 483
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.18 E-value=3.9 Score=38.62 Aligned_cols=33 Identities=9% Similarity=0.168 Sum_probs=28.8
Q ss_pred CCCCCeEEEEcc---ChHHHHHHHHHHHCCCEEEEE
Q 015287 203 SISNMKFAIQGF---GNVGSWAAKFFHEHGGKVVAV 235 (410)
Q Consensus 203 ~l~g~~vaIqGf---GnVG~~~a~~L~~~GakvVaV 235 (410)
+++++++.|.|. |.+|..+++.|.++|++|+.+
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~ 37 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFT 37 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEE
Confidence 468899999996 479999999999999999854
No 484
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.10 E-value=9.6 Score=39.58 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=29.8
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEE
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 235 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 235 (410)
.++++++.|.|. |.+|..+++.|.++|++|+.+
T Consensus 207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~ 240 (450)
T PRK08261 207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCL 240 (450)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE
Confidence 478899999996 999999999999999999854
No 485
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=77.09 E-value=3.4 Score=40.41 Aligned_cols=29 Identities=31% Similarity=0.407 Sum_probs=26.0
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEE
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAV 235 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaV 235 (410)
++|+|.|.|++|..+|..|.+.|..|+.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~ 29 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFL 29 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEE
Confidence 47999999999999999999999988744
No 486
>PRK12827 short chain dehydrogenase; Provisional
Probab=77.06 E-value=4.4 Score=37.64 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=29.4
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEE
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 236 (410)
+++++++.|.|. |.+|+++|+.|.++|++|+.+.
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLD 37 (249)
T ss_pred CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEc
Confidence 367889999994 9999999999999999998554
No 487
>PLN00198 anthocyanidin reductase; Provisional
Probab=77.03 E-value=4.1 Score=40.39 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=29.5
Q ss_pred CCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEEE
Q 015287 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 203 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakvVaVs 236 (410)
..++++|.|.| .|-+|+++++.|.++|++|++++
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~ 40 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTV 40 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEE
Confidence 35688999999 69999999999999999997553
No 488
>PRK08017 oxidoreductase; Provisional
Probab=76.92 E-value=4.1 Score=38.21 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=26.7
Q ss_pred CeEEEEcc-ChHHHHHHHHHHHCCCEEEEEE
Q 015287 207 MKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 236 (410)
Q Consensus 207 ~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 236 (410)
+++.|.|. |.+|+.+++.|.++|++|+.++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~ 33 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAAC 33 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 57999997 9999999999999999998553
No 489
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=76.80 E-value=3.7 Score=45.27 Aligned_cols=35 Identities=31% Similarity=0.338 Sum_probs=31.1
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
..+++|+|+|.|..|..+|..|.+.|++|+ |.|..
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~-V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVT-VYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEE-EEecC
Confidence 368999999999999999999999999987 77753
No 490
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=76.63 E-value=3.8 Score=39.86 Aligned_cols=32 Identities=28% Similarity=0.247 Sum_probs=27.2
Q ss_pred eEEEEccChHHHHHHHHHHHCCCEEEEEECCCC
Q 015287 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG 240 (410)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G 240 (410)
.|+|+|.|-.|..+|..|+++|.+|+ |-|.+.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~-i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVT-IIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEE-EEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccc-cchhcc
Confidence 69999999999999999999999987 888654
No 491
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.58 E-value=4.2 Score=42.22 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=31.5
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
+.+++|.|.|+|.-|..++++|.+.|++|+ ++|.+
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~-~~D~~ 38 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPR-VIDTR 38 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEE-EEcCC
Confidence 467899999999999999999999999987 68865
No 492
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=76.47 E-value=4.8 Score=40.36 Aligned_cols=39 Identities=28% Similarity=0.365 Sum_probs=33.0
Q ss_pred HhCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 199 EHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 199 ~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
.....+.++||.|.|. |-||+|+++.|...|.+|+ ++|.
T Consensus 20 ~~~~p~~~lrI~itGgaGFIgSHLvdkLm~egh~VI-a~Dn 59 (350)
T KOG1429|consen 20 EQVKPSQNLRILITGGAGFIGSHLVDKLMTEGHEVI-ALDN 59 (350)
T ss_pred hcccCCCCcEEEEecCcchHHHHHHHHHHhcCCeEE-EEec
Confidence 3456678899999885 8999999999999999999 6775
No 493
>PTZ00090 40S ribosomal protein S11; Provisional
Probab=76.45 E-value=12 Score=35.74 Aligned_cols=67 Identities=10% Similarity=0.003 Sum_probs=52.1
Q ss_pred CCCchhHHHHHHHHHHHHH-HhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECCCCceeCC-CC
Q 015287 180 GREAATGLGVFFATEALLA-EHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNP-NG 247 (410)
Q Consensus 180 gr~~aTg~Gv~~~~~~~~~-~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~~~-~G 247 (410)
|.-..|.|....+.+.+++ .....++...|-|.|.|. =..+.+.|+..|.+|..|.|....-||- ||
T Consensus 156 GsKKsTpfAAQ~aae~aakka~~~GIk~V~V~vKGpGg-REtALRaL~~~GLkIt~I~DvTpiPHNG~NG 224 (233)
T PTZ00090 156 KKLQQSERCAYRIGENIAKKCRRLGIFAVDIKFRRIMR-VETVLQAFYANGLQVTQIIHEPRLPKCGLNA 224 (233)
T ss_pred cCccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeCCCh-HHHHHHHHHHCCCEEEEEEECCCCCcCCCCC
Confidence 4456888888888888777 334567788899999995 4556699999999999999988776754 44
No 494
>PRK08589 short chain dehydrogenase; Validated
Probab=76.41 E-value=4.9 Score=38.59 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=29.4
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEE
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 235 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 235 (410)
.++++++.|.|. |.+|+.+++.|.++|++|+.+
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~ 36 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAV 36 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 368899999996 899999999999999999854
No 495
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=76.35 E-value=2.1 Score=47.89 Aligned_cols=32 Identities=28% Similarity=0.299 Sum_probs=29.2
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEEECCC
Q 015287 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (410)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 239 (410)
++|+|+|.|.+|..+|..++..|..|+ +-|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~-l~d~~ 345 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVI-MKDIN 345 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEE-EEeCC
Confidence 579999999999999999999999998 77764
No 496
>PRK09242 tropinone reductase; Provisional
Probab=76.23 E-value=4.9 Score=37.92 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=30.2
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+++++++.|.|. |.+|+.+++.|.++|++|+.+ +.
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~-~r 41 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIV-AR 41 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-eC
Confidence 478999999985 899999999999999998844 44
No 497
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.22 E-value=4.6 Score=38.52 Aligned_cols=34 Identities=18% Similarity=0.433 Sum_probs=29.9
Q ss_pred CCCCeEEEEcc---ChHHHHHHHHHHHCCCEEEEEECC
Q 015287 204 ISNMKFAIQGF---GNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 204 l~g~~vaIqGf---GnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
+++++++|.|. +.+|..+|+.|.+.|++|+ +.|.
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~-l~~r 41 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVV-LTGF 41 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEE-EecC
Confidence 67899999996 7899999999999999988 5554
No 498
>CHL00194 ycf39 Ycf39; Provisional
Probab=76.17 E-value=4.2 Score=40.19 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=27.4
Q ss_pred CeEEEEcc-ChHHHHHHHHHHHCCCEEEEEEC
Q 015287 207 MKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSD 237 (410)
Q Consensus 207 ~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 237 (410)
++|.|.|. |.+|+++++.|.++|.+|++++-
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R 32 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVR 32 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEc
Confidence 47999995 99999999999999999997763
No 499
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=76.10 E-value=8.1 Score=39.42 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=30.6
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEEECC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 238 (410)
..|.+|+|.|.|.||..++++....|++|+++.+.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~ 211 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRS 211 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCC
Confidence 36899999999999999999999999998866543
No 500
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=76.10 E-value=9.1 Score=36.99 Aligned_cols=34 Identities=29% Similarity=0.321 Sum_probs=29.2
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCE-EEEEECC
Q 015287 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGK-VVAVSDI 238 (410)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~Gak-vVaVsD~ 238 (410)
..|.+|.|.|.|.+|..+++++...|++ |+++ |.
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~-~~ 153 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAA-DP 153 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE-CC
Confidence 3788999999999999999999999997 6644 54
Done!