Query 015289
Match_columns 409
No_of_seqs 179 out of 1653
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:54:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015289.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015289hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02534 mucon_cyclo muconate 100.0 1.6E-70 3.5E-75 548.3 39.4 354 48-409 1-363 (368)
2 cd03318 MLE Muconate Lactonizi 100.0 2.7E-70 5.8E-75 546.4 40.7 355 47-409 1-364 (365)
3 cd03317 NAAAR N-acylamino acid 100.0 1.3E-67 2.8E-72 525.1 40.9 346 51-409 1-353 (354)
4 cd03328 MR_like_3 Mandelate ra 100.0 1E-67 2.2E-72 524.3 37.5 339 47-405 1-351 (352)
5 cd03321 mandelate_racemase Man 100.0 7.8E-68 1.7E-72 526.4 36.2 345 46-409 1-352 (355)
6 cd03323 D-glucarate_dehydratas 100.0 9.6E-67 2.1E-71 523.7 37.3 345 47-408 1-385 (395)
7 PRK15072 bifunctional D-altron 100.0 7.5E-66 1.6E-70 519.6 38.1 339 46-409 1-382 (404)
8 cd03329 MR_like_4 Mandelate ra 100.0 1.2E-65 2.6E-70 513.0 37.9 343 47-409 1-366 (368)
9 PRK14017 galactonate dehydrata 100.0 3E-65 6.5E-70 512.4 36.0 335 46-408 1-357 (382)
10 cd03316 MR_like Mandelate race 100.0 1.7E-64 3.7E-69 503.4 38.3 340 47-402 1-357 (357)
11 cd03325 D-galactonate_dehydrat 100.0 5.2E-64 1.1E-68 498.2 37.0 330 47-404 1-352 (352)
12 cd03326 MR_like_1 Mandelate ra 100.0 9.6E-64 2.1E-68 499.7 38.6 338 51-408 3-379 (385)
13 cd03322 rpsA The starvation se 100.0 6.7E-64 1.4E-68 498.8 36.4 331 47-409 1-339 (361)
14 cd03327 MR_like_2 Mandelate ra 100.0 4.9E-63 1.1E-67 489.2 36.7 319 47-404 1-341 (341)
15 cd03324 rTSbeta_L-fuconate_deh 100.0 1.8E-62 4E-67 494.1 37.7 342 46-404 1-415 (415)
16 TIGR03247 glucar-dehydr glucar 100.0 4.7E-62 1E-66 493.8 37.8 348 45-409 3-403 (441)
17 COG4948 L-alanine-DL-glutamate 100.0 5.4E-62 1.2E-66 487.7 35.0 349 46-408 1-363 (372)
18 TIGR01928 menC_lowGC/arch o-su 100.0 1.1E-60 2.4E-65 469.1 37.1 317 54-383 1-322 (324)
19 PRK15440 L-rhamnonate dehydrat 100.0 5.2E-60 1.1E-64 473.4 35.1 310 72-408 54-387 (394)
20 PRK15129 L-Ala-D/L-Glu epimera 100.0 3.8E-59 8.3E-64 457.7 39.4 316 50-392 3-320 (321)
21 cd03319 L-Ala-DL-Glu_epimerase 100.0 1.5E-58 3.3E-63 453.1 40.0 310 51-372 2-313 (316)
22 cd03315 MLE_like Muconate lact 100.0 4.3E-56 9.3E-61 425.4 33.9 256 51-363 1-258 (265)
23 TIGR01927 menC_gamma/gm+ o-suc 100.0 2.3E-53 4.9E-58 413.8 30.7 290 54-375 1-296 (307)
24 cd03320 OSBS o-Succinylbenzoat 100.0 1.5E-53 3.2E-58 407.3 27.2 250 52-364 2-255 (263)
25 PRK05105 O-succinylbenzoate sy 100.0 1.5E-51 3.3E-56 403.5 32.7 296 49-380 2-302 (322)
26 PRK02714 O-succinylbenzoate sy 100.0 1.6E-51 3.5E-56 403.2 32.0 293 50-373 4-303 (320)
27 TIGR01502 B_methylAsp_ase meth 100.0 1.3E-50 2.8E-55 404.1 35.4 287 72-363 47-376 (408)
28 cd03314 MAL Methylaspartate am 100.0 6E-51 1.3E-55 402.5 31.6 287 75-364 13-341 (369)
29 cd00308 enolase_like Enolase-s 100.0 4.6E-50 1E-54 375.8 26.0 225 51-368 1-228 (229)
30 PLN02980 2-oxoglutarate decarb 100.0 7E-49 1.5E-53 451.1 38.2 332 39-384 924-1303(1655)
31 PRK02901 O-succinylbenzoate sy 100.0 2.1E-42 4.6E-47 337.8 30.0 280 52-408 13-299 (327)
32 PRK00077 eno enolase; Provisio 100.0 8.7E-40 1.9E-44 330.8 32.9 300 46-363 2-384 (425)
33 cd03313 enolase Enolase: Enola 100.0 7.5E-39 1.6E-43 322.4 29.6 283 74-362 13-383 (408)
34 TIGR01060 eno phosphopyruvate 100.0 3.3E-38 7.2E-43 319.2 31.9 286 74-365 15-387 (425)
35 PLN00191 enolase 100.0 4E-32 8.6E-37 274.7 32.8 300 46-365 26-418 (457)
36 PTZ00081 enolase; Provisional 100.0 5.6E-30 1.2E-34 258.1 32.9 297 45-363 1-402 (439)
37 COG1441 MenC O-succinylbenzoat 99.9 9.4E-25 2E-29 195.2 18.2 274 50-361 3-282 (321)
38 PF02746 MR_MLE_N: Mandelate r 99.9 8.4E-23 1.8E-27 171.4 15.7 115 49-170 2-117 (117)
39 PF13378 MR_MLE_C: Enolase C-t 99.9 2.5E-22 5.4E-27 166.9 9.9 106 292-402 1-111 (111)
40 COG0148 Eno Enolase [Carbohydr 99.8 8.3E-17 1.8E-21 155.4 28.8 296 47-363 3-381 (423)
41 PRK08350 hypothetical protein; 99.8 4.4E-17 9.6E-22 155.9 23.5 281 47-363 3-307 (341)
42 PF01188 MR_MLE: Mandelate rac 99.7 3.9E-16 8.5E-21 117.6 8.5 66 219-292 1-67 (67)
43 PTZ00378 hypothetical protein; 99.7 6.6E-14 1.4E-18 141.2 26.5 296 44-363 47-451 (518)
44 COG3799 Mal Methylaspartate am 99.6 1.6E-13 3.4E-18 127.4 17.8 285 74-362 50-376 (410)
45 KOG2670 Enolase [Carbohydrate 99.5 8.3E-12 1.8E-16 117.5 23.2 280 74-361 17-390 (433)
46 PF07476 MAAL_C: Methylasparta 99.3 2.6E-11 5.6E-16 109.1 14.3 161 200-362 33-216 (248)
47 cd02932 OYE_YqiM_FMN Old yello 99.1 2E-09 4.3E-14 106.6 14.7 121 189-315 155-319 (336)
48 cd02801 DUS_like_FMN Dihydrour 99.1 5.6E-09 1.2E-13 97.7 16.6 143 166-315 45-212 (231)
49 PF00113 Enolase_C: Enolase, C 99.1 1.4E-09 3.1E-14 104.6 12.1 165 184-363 76-254 (295)
50 cd04733 OYE_like_2_FMN Old yel 98.8 7.1E-08 1.5E-12 95.6 15.2 121 189-315 150-321 (338)
51 cd02803 OYE_like_FMN_family Ol 98.7 3.6E-07 7.7E-12 90.1 14.8 120 190-315 143-310 (327)
52 cd02930 DCR_FMN 2,4-dienoyl-Co 98.6 5.5E-07 1.2E-11 89.8 14.1 122 190-315 139-305 (353)
53 PF03952 Enolase_N: Enolase, N 98.4 1.5E-05 3.3E-10 67.9 14.3 111 47-169 1-132 (132)
54 PRK10550 tRNA-dihydrouridine s 97.8 0.0013 2.8E-08 64.4 16.8 143 175-321 62-229 (312)
55 PF05034 MAAL_N: Methylasparta 97.6 0.00078 1.7E-08 57.8 10.1 97 73-169 49-153 (159)
56 PRK10415 tRNA-dihydrouridine s 97.4 0.0058 1.3E-07 60.2 15.7 138 177-321 66-229 (321)
57 COG0042 tRNA-dihydrouridine sy 97.3 0.009 2E-07 58.9 15.9 140 175-321 66-233 (323)
58 cd02810 DHOD_DHPD_FMN Dihydroo 97.1 0.011 2.3E-07 57.3 13.6 132 176-315 99-271 (289)
59 TIGR00736 nifR3_rel_arch TIM-b 97.0 0.037 8E-07 51.8 15.7 131 177-315 69-219 (231)
60 PF01207 Dus: Dihydrouridine s 97.0 0.0096 2.1E-07 58.3 12.4 143 167-316 45-213 (309)
61 cd02931 ER_like_FMN Enoate red 96.9 0.026 5.6E-07 57.0 15.1 124 190-315 152-334 (382)
62 TIGR00737 nifR3_yhdG putative 96.9 0.042 9.2E-07 54.0 16.2 135 174-315 61-221 (319)
63 PRK07259 dihydroorotate dehydr 96.9 0.04 8.7E-07 53.7 15.8 131 176-316 92-263 (301)
64 cd04734 OYE_like_3_FMN Old yel 96.9 0.035 7.5E-07 55.2 15.5 120 190-315 143-314 (343)
65 PRK11815 tRNA-dihydrouridine s 96.9 0.071 1.5E-06 52.8 17.5 142 167-316 56-233 (333)
66 cd02911 arch_FMN Archeal FMN-b 96.7 0.089 1.9E-06 49.4 15.9 131 177-318 74-222 (233)
67 cd04747 OYE_like_5_FMN Old yel 96.7 0.051 1.1E-06 54.4 15.1 119 190-314 146-326 (361)
68 TIGR00742 yjbN tRNA dihydrouri 96.6 0.13 2.7E-06 50.7 16.8 141 168-317 47-224 (318)
69 cd04740 DHOD_1B_like Dihydroor 96.6 0.11 2.3E-06 50.5 16.0 133 176-318 90-262 (296)
70 PRK08255 salicylyl-CoA 5-hydro 96.3 0.096 2.1E-06 57.8 15.1 144 190-338 553-737 (765)
71 PRK10605 N-ethylmaleimide redu 96.2 0.12 2.6E-06 51.9 14.3 123 190-315 161-320 (362)
72 PRK13523 NADPH dehydrogenase N 96.1 0.13 2.9E-06 51.0 14.0 119 190-314 144-303 (337)
73 COG1902 NemA NADH:flavin oxido 96.1 0.14 3E-06 51.3 14.1 125 190-314 151-316 (363)
74 TIGR01037 pyrD_sub1_fam dihydr 96.1 0.2 4.4E-06 48.7 15.0 155 177-338 92-290 (300)
75 cd04735 OYE_like_4_FMN Old yel 95.9 0.15 3.2E-06 51.0 13.2 119 190-313 146-310 (353)
76 cd02933 OYE_like_FMN Old yello 95.6 0.47 1E-05 47.1 15.2 119 190-315 154-313 (338)
77 cd02929 TMADH_HD_FMN Trimethyl 95.3 0.58 1.3E-05 47.1 15.2 121 190-315 152-318 (370)
78 TIGR01182 eda Entner-Doudoroff 95.3 0.36 7.9E-06 44.3 12.3 97 241-350 18-115 (204)
79 cd00377 ICL_PEPM Members of th 95.0 0.65 1.4E-05 43.9 13.4 105 182-293 78-203 (243)
80 TIGR00735 hisF imidazoleglycer 94.8 0.69 1.5E-05 43.9 13.4 153 176-339 75-253 (254)
81 PRK06015 keto-hydroxyglutarate 94.6 0.49 1.1E-05 43.3 11.3 99 240-351 13-112 (201)
82 PRK07114 keto-hydroxyglutarate 94.5 0.68 1.5E-05 43.1 12.0 100 241-350 25-126 (222)
83 COG0821 gcpE 1-hydroxy-2-methy 94.4 0.38 8.3E-06 46.8 10.3 111 227-345 17-132 (361)
84 cd07943 DRE_TIM_HOA 4-hydroxy- 93.8 0.79 1.7E-05 43.7 11.3 99 239-343 18-132 (263)
85 PRK12330 oxaloacetate decarbox 93.7 8.1 0.00018 40.4 19.3 168 186-359 25-221 (499)
86 PRK05718 keto-hydroxyglutarate 93.5 1.1 2.4E-05 41.4 11.4 97 239-348 23-120 (212)
87 PF00724 Oxidored_FMN: NADH:fl 93.4 0.53 1.2E-05 46.7 9.8 126 190-315 151-320 (341)
88 COG0800 Eda 2-keto-3-deoxy-6-p 93.3 1.1 2.3E-05 41.2 10.7 95 241-349 23-119 (211)
89 PRK00366 ispG 4-hydroxy-3-meth 93.3 0.98 2.1E-05 44.6 11.0 110 227-344 23-138 (360)
90 cd03174 DRE_TIM_metallolyase D 93.0 6.3 0.00014 37.1 16.2 170 186-368 17-220 (265)
91 cd04738 DHOD_2_like Dihydrooro 92.8 2.2 4.8E-05 42.1 13.2 121 187-315 147-308 (327)
92 TIGR00612 ispG_gcpE 1-hydroxy- 92.7 1.1 2.3E-05 43.9 10.2 96 241-344 32-129 (346)
93 cd02940 DHPD_FMN Dihydropyrimi 92.6 4.8 0.0001 39.1 15.1 132 177-318 101-283 (299)
94 PRK06552 keto-hydroxyglutarate 92.4 1.9 4.1E-05 39.9 11.3 96 241-350 23-123 (213)
95 PRK14042 pyruvate carboxylase 92.1 14 0.0003 39.6 18.6 167 186-359 24-218 (596)
96 PRK02083 imidazole glycerol ph 91.8 3.8 8.1E-05 38.8 12.9 153 176-339 75-251 (253)
97 cd00945 Aldolase_Class_I Class 91.8 9 0.00019 34.0 15.2 130 176-309 49-195 (201)
98 COG0106 HisA Phosphoribosylfor 91.8 4.9 0.00011 37.7 13.1 131 192-329 88-238 (241)
99 KOG2335 tRNA-dihydrouridine sy 91.5 7.8 0.00017 38.3 14.7 150 177-337 75-268 (358)
100 cd04741 DHOD_1A_like Dihydroor 91.3 12 0.00026 36.3 16.2 139 176-318 92-274 (294)
101 PF01081 Aldolase: KDPG and KH 91.3 1.5 3.3E-05 39.9 9.2 99 240-351 17-116 (196)
102 cd04739 DHOD_like Dihydroorota 91.2 8.5 0.00018 37.9 15.2 158 176-338 100-294 (325)
103 PRK14040 oxaloacetate decarbox 91.2 23 0.0005 38.0 19.2 168 185-359 24-219 (593)
104 PRK00748 1-(5-phosphoribosyl)- 91.0 5.8 0.00013 36.8 13.2 126 180-315 79-219 (233)
105 PRK13585 1-(5-phosphoribosyl)- 91.0 5 0.00011 37.5 12.8 122 183-315 84-221 (241)
106 PRK06552 keto-hydroxyglutarate 90.9 13 0.00029 34.3 17.1 141 183-344 20-163 (213)
107 PRK12581 oxaloacetate decarbox 90.8 20 0.00043 37.2 17.7 168 186-360 33-228 (468)
108 PRK14024 phosphoribosyl isomer 90.7 5.9 0.00013 37.2 13.0 117 192-315 88-221 (241)
109 PRK12331 oxaloacetate decarbox 90.6 17 0.00038 37.5 17.2 169 185-359 23-218 (448)
110 PRK09140 2-dehydro-3-deoxy-6-p 90.6 14 0.0003 34.0 16.5 139 183-343 17-158 (206)
111 PRK07565 dihydroorotate dehydr 90.5 11 0.00024 37.2 15.3 134 176-316 102-268 (334)
112 PRK11320 prpB 2-methylisocitra 90.5 7.5 0.00016 37.7 13.6 131 176-314 79-232 (292)
113 TIGR02317 prpB methylisocitrat 90.3 7.2 0.00016 37.7 13.3 109 176-291 74-202 (285)
114 TIGR03217 4OH_2_O_val_ald 4-hy 90.2 4.7 0.0001 39.9 12.2 102 238-344 19-135 (333)
115 PRK05458 guanosine 5'-monophos 90.1 12 0.00026 36.9 14.9 116 189-316 97-230 (326)
116 PRK05286 dihydroorotate dehydr 90.1 3 6.5E-05 41.5 10.9 125 186-316 155-318 (344)
117 TIGR03572 WbuZ glycosyl amidat 90.0 6.1 0.00013 36.7 12.4 123 183-315 82-226 (232)
118 PRK09282 pyruvate carboxylase 89.9 15 0.00034 39.3 16.7 168 185-359 23-218 (592)
119 TIGR01304 IMP_DH_rel_2 IMP deh 89.9 14 0.00031 37.1 15.4 106 191-314 102-214 (369)
120 cd04731 HisF The cyclase subun 89.9 9.5 0.00021 35.7 13.7 130 176-315 72-222 (243)
121 cd07940 DRE_TIM_IPMS 2-isoprop 89.7 3.8 8.3E-05 39.1 10.9 103 239-347 16-138 (268)
122 PRK06015 keto-hydroxyglutarate 89.6 16 0.00035 33.4 15.5 140 184-345 12-153 (201)
123 TIGR01182 eda Entner-Doudoroff 89.6 16 0.00036 33.5 15.5 141 183-345 15-157 (204)
124 PRK05096 guanosine 5'-monophos 89.2 24 0.00053 34.9 16.2 127 185-343 79-220 (346)
125 PRK01033 imidazole glycerol ph 89.2 7 0.00015 37.1 12.3 114 194-314 89-224 (258)
126 cd07944 DRE_TIM_HOA_like 4-hyd 89.2 6.5 0.00014 37.6 12.1 102 238-344 15-130 (266)
127 PRK14041 oxaloacetate decarbox 89.1 25 0.00054 36.6 16.9 168 185-359 22-217 (467)
128 PLN02617 imidazole glycerol ph 89.0 8.9 0.00019 40.6 13.8 159 176-339 315-536 (538)
129 PRK08649 inosine 5-monophospha 88.9 12 0.00025 37.7 14.0 90 213-316 117-215 (368)
130 PRK01130 N-acetylmannosamine-6 88.6 17 0.00036 33.5 14.2 109 192-315 79-201 (221)
131 PLN02411 12-oxophytodienoate r 88.3 12 0.00027 37.9 13.9 123 190-315 167-341 (391)
132 TIGR01859 fruc_bis_ald_ fructo 88.0 6.1 0.00013 38.2 11.1 57 283-340 70-132 (282)
133 cd04732 HisA HisA. Phosphorib 88.0 8.6 0.00019 35.6 11.9 123 181-315 79-218 (234)
134 cd00381 IMPDH IMPDH: The catal 87.9 29 0.00063 34.2 16.0 117 189-315 94-225 (325)
135 CHL00200 trpA tryptophan synth 87.7 24 0.00053 33.7 14.8 92 176-268 17-156 (263)
136 TIGR02319 CPEP_Pphonmut carbox 87.6 14 0.0003 35.9 13.2 100 183-289 87-204 (294)
137 PRK06806 fructose-bisphosphate 87.3 6.9 0.00015 37.8 10.9 57 283-340 71-132 (281)
138 TIGR02320 PEP_mutase phosphoen 87.2 18 0.0004 35.0 13.8 122 185-308 89-233 (285)
139 PTZ00314 inosine-5'-monophosph 87.1 36 0.00078 35.7 16.9 118 191-318 243-375 (495)
140 cd06660 Aldo_ket_red Aldo-keto 86.8 29 0.00062 32.9 15.6 160 186-347 27-203 (285)
141 PRK12738 kbaY tagatose-bisphos 86.8 8.8 0.00019 37.2 11.3 57 283-340 71-132 (286)
142 PRK06801 hypothetical protein; 86.5 17 0.00038 35.1 13.2 102 236-339 22-131 (286)
143 PRK08195 4-hyroxy-2-oxovalerat 86.3 10 0.00022 37.6 11.8 100 238-344 20-136 (337)
144 cd00947 TBP_aldolase_IIB Tagat 86.1 8.6 0.00019 37.0 10.8 103 236-340 17-127 (276)
145 cd07937 DRE_TIM_PC_TC_5S Pyruv 86.1 33 0.00071 32.9 17.2 177 186-368 19-222 (275)
146 PRK07998 gatY putative fructos 85.7 21 0.00046 34.5 13.3 114 192-316 88-229 (283)
147 PRK09195 gatY tagatose-bisphos 85.6 13 0.00028 35.9 11.8 57 283-340 71-132 (284)
148 TIGR01769 GGGP geranylgeranylg 85.5 6.6 0.00014 36.1 9.3 71 240-315 131-204 (205)
149 TIGR01858 tag_bisphos_ald clas 85.5 14 0.0003 35.7 11.9 57 283-340 69-130 (282)
150 PTZ00314 inosine-5'-monophosph 85.5 20 0.00044 37.5 14.0 104 231-343 229-351 (495)
151 cd00956 Transaldolase_FSA Tran 85.4 28 0.00062 32.0 13.5 115 218-344 41-166 (211)
152 TIGR00007 phosphoribosylformim 85.3 21 0.00045 33.0 12.9 114 194-315 87-217 (230)
153 PF01081 Aldolase: KDPG and KH 85.0 15 0.00032 33.5 11.3 143 182-345 14-157 (196)
154 cd07939 DRE_TIM_NifV Streptomy 85.0 19 0.00041 34.1 12.7 111 238-355 15-142 (259)
155 TIGR01108 oadA oxaloacetate de 84.9 53 0.0012 35.2 17.1 164 185-353 18-209 (582)
156 PRK12737 gatY tagatose-bisphos 84.9 9.3 0.0002 37.0 10.4 57 283-340 71-132 (284)
157 TIGR03128 RuMP_HxlA 3-hexulose 84.8 5.2 0.00011 36.3 8.4 96 239-342 8-108 (206)
158 PRK12999 pyruvate carboxylase; 84.5 39 0.00084 39.3 16.8 167 186-359 553-755 (1146)
159 TIGR01302 IMP_dehydrog inosine 84.4 33 0.00071 35.5 14.9 118 189-316 224-356 (450)
160 PRK11858 aksA trans-homoaconit 83.9 18 0.00038 36.5 12.5 115 235-356 14-149 (378)
161 COG0159 TrpA Tryptophan syntha 83.9 41 0.00089 32.2 14.8 92 178-269 21-160 (265)
162 TIGR02660 nifV_homocitr homoci 83.7 20 0.00043 35.9 12.7 114 235-355 11-145 (365)
163 PRK13587 1-(5-phosphoribosyl)- 83.7 25 0.00054 32.9 12.6 115 192-314 89-219 (234)
164 PRK07315 fructose-bisphosphate 83.4 16 0.00034 35.6 11.4 54 286-340 77-134 (293)
165 PRK08318 dihydropyrimidine deh 83.4 27 0.00059 35.6 13.8 153 177-337 101-309 (420)
166 PLN02591 tryptophan synthase 83.1 43 0.00093 31.8 14.9 28 241-268 116-143 (250)
167 PRK07709 fructose-bisphosphate 83.0 19 0.00042 34.8 11.7 54 286-340 77-135 (285)
168 TIGR01303 IMP_DH_rel_1 IMP deh 82.9 43 0.00094 34.9 15.1 117 189-315 225-356 (475)
169 PRK12737 gatY tagatose-bisphos 81.8 29 0.00063 33.6 12.4 115 192-316 88-232 (284)
170 PRK09140 2-dehydro-3-deoxy-6-p 81.7 22 0.00048 32.6 11.2 95 241-348 20-116 (206)
171 PRK08185 hypothetical protein; 81.6 19 0.00041 34.8 11.1 57 283-340 65-126 (283)
172 cd04729 NanE N-acetylmannosami 81.6 43 0.00093 30.7 14.4 109 192-315 83-205 (219)
173 PRK09195 gatY tagatose-bisphos 81.5 30 0.00064 33.5 12.4 115 192-316 88-232 (284)
174 TIGR00167 cbbA ketose-bisphosp 81.4 27 0.00059 33.9 12.1 103 236-340 22-135 (288)
175 PRK08610 fructose-bisphosphate 81.4 17 0.00036 35.3 10.6 53 287-340 78-135 (286)
176 PF13714 PEP_mutase: Phosphoen 81.3 17 0.00036 34.3 10.4 131 176-315 70-218 (238)
177 PF04131 NanE: Putative N-acet 81.1 36 0.00078 30.8 11.8 121 192-329 55-183 (192)
178 PRK07998 gatY putative fructos 81.1 39 0.00086 32.6 13.0 56 283-339 71-131 (283)
179 TIGR01858 tag_bisphos_ald clas 80.9 32 0.0007 33.2 12.4 115 192-316 86-230 (282)
180 TIGR02090 LEU1_arch isopropylm 80.9 28 0.0006 34.9 12.5 103 235-344 10-133 (363)
181 PRK12857 fructose-1,6-bisphosp 80.8 24 0.00052 34.2 11.5 57 283-340 71-132 (284)
182 PRK07807 inosine 5-monophospha 80.5 12 0.00026 39.0 10.0 116 189-315 227-358 (479)
183 TIGR03217 4OH_2_O_val_ald 4-hy 80.5 34 0.00074 33.9 12.8 141 194-338 93-246 (333)
184 PRK05835 fructose-bisphosphate 80.2 30 0.00065 33.8 12.0 57 283-340 70-132 (307)
185 KOG2550 IMP dehydrogenase/GMP 79.6 17 0.00036 36.8 10.0 99 214-344 250-362 (503)
186 cd06556 ICL_KPHMT Members of t 79.5 25 0.00053 33.2 10.9 95 186-291 87-196 (240)
187 PF04551 GcpE: GcpE protein; 79.4 8.4 0.00018 38.2 7.9 100 240-344 28-139 (359)
188 PRK09196 fructose-1,6-bisphosp 79.4 50 0.0011 32.9 13.4 103 236-340 22-140 (347)
189 PRK07114 keto-hydroxyglutarate 78.9 56 0.0012 30.4 15.4 140 184-345 23-167 (222)
190 TIGR01521 FruBisAldo_II_B fruc 78.9 31 0.00067 34.3 11.7 57 283-340 69-138 (347)
191 PF00682 HMGL-like: HMGL-like 78.9 51 0.0011 30.4 13.0 174 186-368 12-211 (237)
192 PLN02858 fructose-bisphosphate 78.6 35 0.00076 40.4 14.0 106 232-340 1114-1227(1378)
193 cd02812 PcrB_like PcrB_like pr 77.9 18 0.00038 33.6 9.2 79 232-315 124-203 (219)
194 PRK12738 kbaY tagatose-bisphos 77.8 48 0.001 32.1 12.5 115 192-316 88-232 (286)
195 PRK13399 fructose-1,6-bisphosp 77.8 23 0.0005 35.2 10.6 57 283-340 71-140 (347)
196 PRK14041 oxaloacetate decarbox 77.8 77 0.0017 33.0 14.8 131 187-318 93-230 (467)
197 TIGR01235 pyruv_carbox pyruvat 77.5 1.1E+02 0.0024 35.6 17.3 159 188-351 553-747 (1143)
198 PRK07709 fructose-bisphosphate 77.4 34 0.00073 33.1 11.4 115 192-316 91-233 (285)
199 cd07944 DRE_TIM_HOA_like 4-hyd 77.3 51 0.0011 31.5 12.6 93 198-291 92-188 (266)
200 TIGR03128 RuMP_HxlA 3-hexulose 77.2 47 0.001 30.0 11.9 125 182-319 6-136 (206)
201 cd02809 alpha_hydroxyacid_oxid 77.0 74 0.0016 30.8 14.8 109 239-355 125-246 (299)
202 cd04722 TIM_phosphate_binding 76.8 50 0.0011 28.7 14.6 112 194-315 77-198 (200)
203 PRK08195 4-hyroxy-2-oxovalerat 76.7 49 0.0011 32.8 12.6 141 194-338 94-247 (337)
204 PF05690 ThiG: Thiazole biosyn 76.5 60 0.0013 30.5 12.1 127 179-316 67-204 (247)
205 cd07948 DRE_TIM_HCS Saccharomy 76.4 37 0.00081 32.3 11.3 98 239-343 18-132 (262)
206 PRK09234 fbiC FO synthase; Rev 76.2 18 0.00039 40.4 10.3 127 186-345 558-688 (843)
207 PRK15108 biotin synthase; Prov 75.4 44 0.00095 33.2 12.0 103 240-345 76-193 (345)
208 PRK08610 fructose-bisphosphate 75.0 67 0.0014 31.1 12.6 115 192-316 91-233 (286)
209 PRK05567 inosine 5'-monophosph 74.5 1E+02 0.0022 32.2 14.9 115 191-315 230-359 (486)
210 PRK00278 trpC indole-3-glycero 74.3 40 0.00086 32.1 10.9 109 229-342 49-166 (260)
211 TIGR02321 Pphn_pyruv_hyd phosp 74.3 88 0.0019 30.4 15.4 127 183-313 85-232 (290)
212 cd00452 KDPG_aldolase KDPG and 74.0 49 0.0011 29.7 11.0 91 241-345 14-106 (190)
213 PLN02746 hydroxymethylglutaryl 74.0 40 0.00087 33.6 11.2 93 239-340 64-179 (347)
214 PRK05692 hydroxymethylglutaryl 74.0 44 0.00095 32.3 11.3 93 239-340 22-137 (287)
215 PLN02495 oxidoreductase, actin 73.9 54 0.0012 33.2 12.2 98 214-313 98-211 (385)
216 KOG0053 Cystathionine beta-lya 73.7 6.3 0.00014 39.9 5.5 69 244-319 151-223 (409)
217 PRK05437 isopentenyl pyrophosp 73.4 1E+02 0.0022 30.7 14.4 100 216-316 107-217 (352)
218 TIGR01520 FruBisAldo_II_A fruc 73.4 34 0.00073 34.2 10.3 58 283-340 96-170 (357)
219 PRK14114 1-(5-phosphoribosyl)- 73.4 38 0.00081 31.9 10.4 109 192-307 86-209 (241)
220 PLN02274 inosine-5'-monophosph 73.3 91 0.002 32.8 14.1 112 191-315 250-379 (505)
221 CHL00162 thiG thiamin biosynth 72.9 88 0.0019 29.8 14.5 126 180-316 76-218 (267)
222 PRK06843 inosine 5-monophospha 72.8 1.2E+02 0.0025 31.1 15.7 127 176-315 142-284 (404)
223 PRK05718 keto-hydroxyglutarate 72.7 79 0.0017 29.1 15.2 141 183-345 22-164 (212)
224 PRK07084 fructose-bisphosphate 72.7 29 0.00063 34.2 9.6 54 286-340 85-143 (321)
225 PRK06801 hypothetical protein; 72.6 82 0.0018 30.5 12.7 118 192-317 88-234 (286)
226 PRK09282 pyruvate carboxylase 72.6 1.4E+02 0.003 32.2 15.5 126 192-318 100-231 (592)
227 TIGR01305 GMP_reduct_1 guanosi 72.5 1.1E+02 0.0023 30.5 16.6 128 185-344 78-220 (343)
228 cd04726 KGPDC_HPS 3-Keto-L-gul 72.5 21 0.00046 32.1 8.3 101 230-341 3-108 (202)
229 PRK12857 fructose-1,6-bisphosp 72.4 85 0.0018 30.4 12.7 115 192-316 88-232 (284)
230 COG0800 Eda 2-keto-3-deoxy-6-p 72.2 82 0.0018 29.1 13.7 143 182-345 19-162 (211)
231 TIGR00167 cbbA ketose-bisphosp 71.8 73 0.0016 30.9 12.2 116 192-316 91-236 (288)
232 cd04723 HisA_HisF Phosphoribos 71.5 60 0.0013 30.2 11.3 114 192-314 91-216 (233)
233 COG0107 HisF Imidazoleglycerol 71.2 92 0.002 29.2 12.0 153 176-339 75-253 (256)
234 PLN02925 4-hydroxy-3-methylbut 70.9 35 0.00075 37.0 10.3 113 227-344 91-231 (733)
235 PLN02321 2-isopropylmalate syn 70.8 36 0.00077 36.8 10.6 111 235-347 96-235 (632)
236 cd07937 DRE_TIM_PC_TC_5S Pyruv 70.4 99 0.0021 29.6 12.8 100 192-291 95-197 (275)
237 PF00977 His_biosynth: Histidi 70.3 6 0.00013 36.9 4.2 115 192-314 86-218 (229)
238 cd00453 FTBP_aldolase_II Fruct 70.1 70 0.0015 31.7 11.6 58 283-340 82-156 (340)
239 PLN02389 biotin synthase 70.0 75 0.0016 32.1 12.2 38 322-359 212-252 (379)
240 TIGR00973 leuA_bact 2-isopropy 69.9 27 0.00059 36.6 9.4 115 235-355 11-149 (494)
241 cd06557 KPHMT-like Ketopantoat 69.7 37 0.0008 32.3 9.4 101 186-297 88-207 (254)
242 cd00452 KDPG_aldolase KDPG and 69.7 83 0.0018 28.1 15.6 138 184-343 12-150 (190)
243 cd00956 Transaldolase_FSA Tran 69.6 53 0.0012 30.2 10.3 119 184-315 60-184 (211)
244 PRK08508 biotin synthase; Prov 69.4 72 0.0016 30.6 11.6 21 322-342 136-156 (279)
245 PF00682 HMGL-like: HMGL-like 69.3 50 0.0011 30.5 10.3 72 220-291 114-186 (237)
246 COG2513 PrpB PEP phosphonomuta 69.3 92 0.002 30.1 11.9 124 182-313 87-231 (289)
247 cd00947 TBP_aldolase_IIB Tagat 68.8 99 0.0021 29.8 12.2 113 193-315 84-225 (276)
248 cd07943 DRE_TIM_HOA 4-hydroxy- 68.7 1.1E+02 0.0023 29.0 17.8 173 186-368 20-215 (263)
249 PRK13111 trpA tryptophan synth 68.6 1.1E+02 0.0024 29.1 15.5 165 176-348 14-212 (258)
250 PRK02048 4-hydroxy-3-methylbut 68.4 43 0.00092 35.7 10.2 113 227-344 22-162 (611)
251 PF00290 Trp_syntA: Tryptophan 68.3 55 0.0012 31.2 10.3 136 178-315 14-225 (259)
252 PRK12344 putative alpha-isopro 67.9 63 0.0014 34.2 11.6 108 231-344 12-147 (524)
253 PRK00694 4-hydroxy-3-methylbut 67.7 48 0.001 35.1 10.4 113 227-344 26-166 (606)
254 PRK08508 biotin synthase; Prov 67.6 1.2E+02 0.0026 29.1 14.6 149 185-335 40-216 (279)
255 PRK05567 inosine 5'-monophosph 67.5 1.1E+02 0.0024 32.0 13.3 114 229-349 214-344 (486)
256 COG0821 gcpE 1-hydroxy-2-methy 67.0 1.4E+02 0.003 29.6 14.4 102 186-299 34-136 (361)
257 cd03174 DRE_TIM_metallolyase D 67.0 1E+02 0.0022 28.7 12.1 99 193-291 79-195 (265)
258 PRK00915 2-isopropylmalate syn 66.7 82 0.0018 33.2 12.2 118 235-358 14-155 (513)
259 TIGR01302 IMP_dehydrog inosine 66.5 1.4E+02 0.003 30.9 13.7 106 230-344 211-335 (450)
260 PRK00694 4-hydroxy-3-methylbut 66.5 1.8E+02 0.004 30.9 16.1 141 186-340 43-204 (606)
261 PRK09197 fructose-bisphosphate 66.3 1E+02 0.0022 30.8 11.9 58 283-340 89-163 (350)
262 PRK00208 thiG thiazole synthas 66.1 1.2E+02 0.0026 28.7 15.3 122 180-315 68-203 (250)
263 PRK00366 ispG 4-hydroxy-3-meth 65.7 1.5E+02 0.0033 29.6 16.8 133 186-338 40-175 (360)
264 cd04728 ThiG Thiazole synthase 65.5 1.2E+02 0.0027 28.6 15.3 122 180-315 68-203 (248)
265 PF01116 F_bP_aldolase: Fructo 65.1 19 0.00042 34.8 6.7 57 283-340 70-131 (287)
266 PRK09389 (R)-citramalate synth 65.1 1E+02 0.0023 32.2 12.5 103 235-344 12-135 (488)
267 TIGR01303 IMP_DH_rel_1 IMP deh 64.8 1.8E+02 0.0038 30.4 14.1 111 231-348 213-340 (475)
268 PRK07807 inosine 5-monophospha 64.5 1.8E+02 0.004 30.3 14.1 61 286-348 268-342 (479)
269 PF00478 IMPDH: IMP dehydrogen 63.5 1.7E+02 0.0036 29.3 13.0 93 246-344 110-219 (352)
270 PRK13398 3-deoxy-7-phosphohept 62.6 1.4E+02 0.003 28.6 11.9 24 234-257 32-55 (266)
271 cd00331 IGPS Indole-3-glycerol 62.4 84 0.0018 28.7 10.2 108 229-343 10-128 (217)
272 PRK00311 panB 3-methyl-2-oxobu 62.1 74 0.0016 30.4 9.9 94 186-290 91-200 (264)
273 cd02811 IDI-2_FMN Isopentenyl- 61.4 1.7E+02 0.0037 28.8 15.9 136 218-355 101-274 (326)
274 PRK08185 hypothetical protein; 61.2 1.6E+02 0.0035 28.4 12.9 118 193-316 83-228 (283)
275 PRK09261 phospho-2-dehydro-3-d 60.8 1.2E+02 0.0026 30.2 11.3 125 230-363 54-207 (349)
276 PRK07094 biotin synthase; Prov 60.2 1.4E+02 0.0031 29.0 12.0 23 322-344 164-186 (323)
277 PRK07107 inosine 5-monophospha 60.1 1.6E+02 0.0035 30.9 12.9 67 241-315 239-311 (502)
278 PRK08444 hypothetical protein; 59.9 1.4E+02 0.0029 29.9 11.8 128 185-345 80-211 (353)
279 PLN02446 (5-phosphoribosyl)-5- 59.8 1.6E+02 0.0036 28.1 12.8 122 192-318 95-241 (262)
280 TIGR00612 ispG_gcpE 1-hydroxy- 59.8 1.9E+02 0.0041 28.7 16.1 134 185-338 31-166 (346)
281 cd02809 alpha_hydroxyacid_oxid 59.3 1.7E+02 0.0038 28.2 13.8 120 186-315 127-255 (299)
282 PRK13957 indole-3-glycerol-pho 59.0 1.4E+02 0.0029 28.4 10.9 93 246-343 64-158 (247)
283 PRK07535 methyltetrahydrofolat 58.9 1.7E+02 0.0036 27.9 13.1 146 186-343 23-196 (261)
284 PRK06256 biotin synthase; Vali 58.9 1.2E+02 0.0026 29.8 11.2 24 322-345 186-209 (336)
285 PRK07084 fructose-bisphosphate 58.2 1.5E+02 0.0033 29.2 11.5 96 192-294 99-225 (321)
286 cd07941 DRE_TIM_LeuA3 Desulfob 58.1 1.4E+02 0.0031 28.4 11.3 104 235-344 8-140 (273)
287 PRK12330 oxaloacetate decarbox 57.9 2.1E+02 0.0046 30.0 13.1 147 191-338 100-258 (499)
288 cd07948 DRE_TIM_HCS Saccharomy 57.7 1.8E+02 0.0038 27.7 12.0 15 78-92 3-17 (262)
289 PRK02048 4-hydroxy-3-methylbut 57.7 2.7E+02 0.0059 29.9 14.8 142 185-340 38-200 (611)
290 TIGR01919 hisA-trpF 1-(5-phosp 57.6 1.7E+02 0.0037 27.5 11.6 117 192-315 87-224 (243)
291 PRK15063 isocitrate lyase; Pro 57.5 1.9E+02 0.004 29.7 12.2 95 183-280 156-299 (428)
292 cd02940 DHPD_FMN Dihydropyrimi 57.1 1.9E+02 0.0041 27.9 15.1 98 215-314 85-198 (299)
293 PRK14042 pyruvate carboxylase 56.5 2.5E+02 0.0054 30.2 13.7 149 187-338 94-255 (596)
294 cd00946 FBP_aldolase_IIA Class 56.1 1.2E+02 0.0025 30.3 10.4 57 283-340 84-158 (345)
295 COG2022 ThiG Uncharacterized e 55.9 1.8E+02 0.0039 27.3 13.9 144 180-337 75-229 (262)
296 PRK12999 pyruvate carboxylase; 55.5 3.3E+02 0.0071 31.9 15.3 151 187-338 625-792 (1146)
297 PLN02979 glycolate oxidase 55.3 2.3E+02 0.0051 28.5 16.4 80 269-354 210-296 (366)
298 cd04732 HisA HisA. Phosphorib 55.2 1.2E+02 0.0027 27.7 10.1 61 270-337 61-121 (234)
299 COG0191 Fba Fructose/tagatose 55.2 68 0.0015 31.0 8.3 57 283-340 72-133 (286)
300 cd00381 IMPDH IMPDH: The catal 54.9 2.2E+02 0.0048 28.0 15.7 66 287-354 136-215 (325)
301 TIGR01768 GGGP-family geranylg 54.8 47 0.001 30.9 7.0 73 235-315 126-207 (223)
302 PRK05835 fructose-bisphosphate 54.3 1.6E+02 0.0034 28.9 10.8 99 192-299 88-217 (307)
303 TIGR01108 oadA oxaloacetate de 54.0 3.1E+02 0.0067 29.5 17.1 146 192-338 95-250 (582)
304 PRK12331 oxaloacetate decarbox 53.6 2.8E+02 0.006 28.8 14.8 99 193-291 101-202 (448)
305 TIGR00510 lipA lipoate synthas 53.3 2.3E+02 0.0049 27.7 12.2 156 186-344 92-282 (302)
306 PRK01033 imidazole glycerol ph 53.2 2E+02 0.0044 27.1 12.5 148 190-346 32-206 (258)
307 TIGR00433 bioB biotin syntheta 53.0 2E+02 0.0042 27.5 11.5 23 322-344 157-179 (296)
308 PF00218 IGPS: Indole-3-glycer 52.6 42 0.0009 31.9 6.4 93 246-343 71-165 (254)
309 TIGR02660 nifV_homocitr homoci 52.5 2.5E+02 0.0055 28.0 16.6 158 185-351 20-200 (365)
310 COG5016 Pyruvate/oxaloacetate 52.4 2.7E+02 0.0058 28.5 12.1 177 188-368 28-229 (472)
311 cd07938 DRE_TIM_HMGL 3-hydroxy 52.2 2.1E+02 0.0045 27.4 11.3 115 235-358 8-155 (274)
312 PRK05927 hypothetical protein; 52.0 2.1E+02 0.0045 28.5 11.7 129 184-345 75-207 (350)
313 cd07945 DRE_TIM_CMS Leptospira 51.7 1.2E+02 0.0026 29.1 9.7 101 239-344 15-136 (280)
314 TIGR01235 pyruv_carbox pyruvat 51.6 4.6E+02 0.01 30.7 17.3 151 187-338 623-790 (1143)
315 cd00958 DhnA Class I fructose- 51.4 2E+02 0.0043 26.5 13.1 120 186-313 74-211 (235)
316 cd07940 DRE_TIM_IPMS 2-isoprop 51.2 2.2E+02 0.0048 26.9 17.4 175 186-368 18-219 (268)
317 PRK13397 3-deoxy-7-phosphohept 50.0 2.3E+02 0.005 26.9 12.3 39 272-315 66-104 (250)
318 PRK12755 phospho-2-dehydro-3-d 50.0 1.2E+02 0.0027 30.2 9.4 123 231-362 56-207 (353)
319 TIGR00977 LeuA_rel 2-isopropyl 49.6 2.9E+02 0.0064 29.2 12.8 104 235-344 11-143 (526)
320 TIGR02129 hisA_euk phosphoribo 49.3 2.4E+02 0.0052 26.8 11.2 117 192-316 88-233 (253)
321 TIGR01521 FruBisAldo_II_B fruc 49.1 2.1E+02 0.0046 28.5 10.9 116 192-315 87-274 (347)
322 PRK11858 aksA trans-homoaconit 48.3 3E+02 0.0065 27.7 18.8 163 186-359 24-209 (378)
323 COG1060 ThiH Thiamine biosynth 47.8 1.8E+02 0.0038 29.4 10.4 127 185-344 90-220 (370)
324 PF00248 Aldo_ket_red: Aldo/ke 47.7 2.4E+02 0.0053 26.4 11.6 162 185-348 14-193 (283)
325 cd00951 KDGDH 5-dehydro-4-deox 47.4 2.7E+02 0.0058 26.8 13.2 153 186-343 19-183 (289)
326 PLN02274 inosine-5'-monophosph 46.8 2.3E+02 0.0051 29.8 11.5 110 231-348 236-363 (505)
327 PF01180 DHO_dh: Dihydroorotat 46.0 1.6E+02 0.0036 28.2 9.7 138 175-316 96-273 (295)
328 PRK07455 keto-hydroxyglutarate 46.0 2.2E+02 0.0048 25.5 10.6 92 241-345 22-114 (187)
329 cd00423 Pterin_binding Pterin 46.0 1.6E+02 0.0034 27.9 9.4 67 272-344 62-128 (258)
330 PRK07360 FO synthase subunit 2 45.9 1.8E+02 0.0038 29.2 10.2 71 185-258 91-175 (371)
331 COG3010 NanE Putative N-acetyl 45.9 2.5E+02 0.0054 26.0 13.4 108 192-314 89-207 (229)
332 PRK04165 acetyl-CoA decarbonyl 45.8 3.7E+02 0.0079 27.9 18.1 143 186-343 103-268 (450)
333 PRK02506 dihydroorotate dehydr 45.5 3E+02 0.0065 26.8 13.1 160 176-338 93-298 (310)
334 cd04736 MDH_FMN Mandelate dehy 45.2 1.2E+02 0.0025 30.6 8.5 74 270-351 224-304 (361)
335 cd07947 DRE_TIM_Re_CS Clostrid 45.1 2.5E+02 0.0054 27.0 10.7 97 240-343 18-135 (279)
336 COG1167 ARO8 Transcriptional r 45.1 1.3E+02 0.0027 31.2 9.2 96 242-343 164-267 (459)
337 PRK11840 bifunctional sulfur c 43.9 3.3E+02 0.0072 26.9 16.0 124 180-316 142-278 (326)
338 PRK07455 keto-hydroxyglutarate 43.6 2.4E+02 0.0053 25.2 14.9 137 184-343 20-159 (187)
339 PRK12756 phospho-2-dehydro-3-d 43.4 3.2E+02 0.007 27.2 11.1 122 232-363 55-206 (348)
340 TIGR02090 LEU1_arch isopropylm 43.1 3.5E+02 0.0077 27.0 16.0 157 186-351 20-199 (363)
341 PRK07360 FO synthase subunit 2 42.9 1.9E+02 0.0042 28.9 9.9 27 319-345 197-223 (371)
342 cd04731 HisF The cyclase subun 42.7 1.7E+02 0.0038 27.1 9.1 60 270-336 59-118 (243)
343 PLN02925 4-hydroxy-3-methylbut 42.4 5E+02 0.011 28.5 15.9 139 186-338 108-267 (733)
344 TIGR00190 thiC thiamine biosyn 42.2 3.9E+02 0.0085 27.2 11.8 141 163-344 121-264 (423)
345 PF00478 IMPDH: IMP dehydrogen 42.0 2.5E+02 0.0055 28.1 10.3 130 176-317 97-241 (352)
346 COG0107 HisF Imidazoleglycerol 41.6 88 0.0019 29.4 6.5 55 284-341 72-126 (256)
347 PF04551 GcpE: GcpE protein; 41.3 1.5E+02 0.0033 29.5 8.5 111 182-299 25-144 (359)
348 TIGR01520 FruBisAldo_II_A fruc 41.3 3.8E+02 0.0083 26.8 12.4 110 201-316 135-287 (357)
349 PRK09240 thiH thiamine biosynt 41.1 1.5E+02 0.0032 29.8 8.8 68 184-258 103-175 (371)
350 cd00739 DHPS DHPS subgroup of 41.1 3E+02 0.0065 26.1 10.4 98 235-341 16-125 (257)
351 TIGR00262 trpA tryptophan synt 41.1 3.2E+02 0.0069 25.9 13.4 113 192-315 106-226 (256)
352 cd04726 KGPDC_HPS 3-Keto-L-gul 41.1 2.6E+02 0.0056 24.8 16.1 154 181-345 6-167 (202)
353 cd02811 IDI-2_FMN Isopentenyl- 41.0 3.6E+02 0.0078 26.5 12.9 29 286-315 255-283 (326)
354 cd04728 ThiG Thiazole synthase 41.0 3.2E+02 0.0069 25.9 11.0 152 186-348 21-187 (248)
355 PLN02389 biotin synthase 40.9 4E+02 0.0086 26.9 14.0 144 184-336 115-296 (379)
356 PRK13399 fructose-1,6-bisphosp 40.8 3.8E+02 0.0083 26.7 11.9 116 193-316 90-277 (347)
357 TIGR03551 F420_cofH 7,8-dideme 40.7 2.4E+02 0.0053 27.8 10.2 24 321-344 177-200 (343)
358 PRK10060 RNase II stability mo 40.6 2.1E+02 0.0045 31.1 10.5 117 240-363 505-633 (663)
359 PRK00748 1-(5-phosphoribosyl)- 40.6 2.6E+02 0.0057 25.5 9.9 43 269-316 61-103 (233)
360 PRK13210 putative L-xylulose 5 40.4 2.2E+02 0.0049 26.7 9.6 21 324-344 134-154 (284)
361 PRK09722 allulose-6-phosphate 40.3 2.8E+02 0.006 25.9 9.8 133 177-316 61-197 (229)
362 PF01408 GFO_IDH_MocA: Oxidore 39.9 1.3E+02 0.0029 24.0 7.0 106 216-342 12-119 (120)
363 PF02679 ComA: (2R)-phospho-3- 39.5 24 0.00051 33.4 2.5 61 284-345 11-76 (244)
364 cd03332 LMO_FMN L-Lactate 2-mo 39.2 2.4E+02 0.0052 28.5 9.8 78 270-353 241-325 (383)
365 TIGR01496 DHPS dihydropteroate 38.7 2.6E+02 0.0057 26.4 9.6 98 235-341 15-123 (257)
366 PRK14863 bifunctional regulato 38.0 3.7E+02 0.0081 25.8 11.2 152 186-345 30-194 (292)
367 TIGR03700 mena_SCO4494 putativ 37.8 2.8E+02 0.006 27.5 10.1 108 240-348 79-213 (351)
368 PF05913 DUF871: Bacterial pro 37.7 60 0.0013 32.5 5.2 141 186-340 12-173 (357)
369 PLN02535 glycolate oxidase 37.7 3.4E+02 0.0073 27.3 10.5 77 270-352 211-294 (364)
370 PRK03620 5-dehydro-4-deoxygluc 37.7 3.9E+02 0.0084 25.9 18.0 153 186-343 26-190 (303)
371 PRK12581 oxaloacetate decarbox 37.3 5E+02 0.011 27.1 13.3 98 194-291 111-211 (468)
372 COG0119 LeuA Isopropylmalate/h 37.1 2.2E+02 0.0048 29.1 9.3 108 235-349 12-145 (409)
373 cd01310 TatD_DNAse TatD like p 37.0 2.5E+02 0.0055 25.5 9.2 16 328-343 113-128 (251)
374 TIGR03699 mena_SCO4550 menaqui 36.9 1.9E+02 0.0042 28.3 8.8 25 321-345 179-203 (340)
375 COG0042 tRNA-dihydrouridine sy 35.6 1.9E+02 0.0041 28.5 8.3 69 181-251 144-219 (323)
376 PRK13352 thiamine biosynthesis 35.5 4.1E+02 0.0089 27.2 10.6 126 185-344 140-267 (431)
377 cd00957 Transaldolase_TalAB Tr 35.2 4.4E+02 0.0096 25.9 12.6 106 229-341 90-220 (313)
378 TIGR01362 KDO8P_synth 3-deoxy- 35.2 2.5E+02 0.0055 26.7 8.6 62 272-341 60-121 (258)
379 PRK13361 molybdenum cofactor b 34.9 4.4E+02 0.0096 25.7 12.7 136 185-340 45-187 (329)
380 PF02310 B12-binding: B12 bind 34.9 2.2E+02 0.0049 22.7 7.6 72 273-345 16-90 (121)
381 PF00701 DHDPS: Dihydrodipicol 34.9 4.1E+02 0.0088 25.3 12.2 152 186-342 20-186 (289)
382 cd07939 DRE_TIM_NifV Streptomy 34.5 4E+02 0.0086 25.0 18.1 171 185-368 17-212 (259)
383 PRK09196 fructose-1,6-bisphosp 34.5 4.8E+02 0.01 26.0 12.2 116 193-316 90-277 (347)
384 TIGR00343 pyridoxal 5'-phospha 34.4 3.5E+02 0.0076 26.2 9.6 86 215-317 54-142 (287)
385 PRK07695 transcriptional regul 34.4 3.4E+02 0.0074 24.3 12.3 81 220-315 86-176 (201)
386 cd06556 ICL_KPHMT Members of t 34.2 4E+02 0.0087 25.0 12.3 53 212-264 56-110 (240)
387 PF11590 DNAPolymera_Pol: DNA 34.0 41 0.00089 22.3 2.2 35 193-227 3-37 (41)
388 PF12040 DUF3526: Domain of un 33.6 1.1E+02 0.0023 26.7 5.6 49 218-277 4-52 (156)
389 PRK14040 oxaloacetate decarbox 33.4 6.4E+02 0.014 27.2 13.2 126 194-320 103-234 (593)
390 TIGR03849 arch_ComA phosphosul 33.4 50 0.0011 31.1 3.6 45 297-344 10-62 (237)
391 PRK15029 arginine decarboxylas 33.2 2.9E+02 0.0063 30.7 10.0 134 184-342 200-347 (755)
392 PF09872 DUF2099: Uncharacteri 33.2 2.1E+02 0.0045 27.1 7.6 58 194-253 155-213 (258)
393 PRK12595 bifunctional 3-deoxy- 33.1 5.1E+02 0.011 25.9 12.3 116 241-367 130-257 (360)
394 cd00245 Glm_e Coenzyme B12-dep 33.0 4.4E+02 0.0095 27.2 10.6 139 192-340 5-167 (428)
395 PLN02446 (5-phosphoribosyl)-5- 32.4 4.5E+02 0.0098 25.1 10.8 148 191-345 46-216 (262)
396 PF02581 TMP-TENI: Thiamine mo 32.4 1.4E+02 0.0031 26.3 6.4 44 300-344 17-64 (180)
397 TIGR01290 nifB nitrogenase cof 32.3 2.3E+02 0.005 29.2 8.7 61 185-245 60-126 (442)
398 PF05690 ThiG: Thiazole biosyn 31.8 4.5E+02 0.0097 24.8 10.4 163 186-362 20-197 (247)
399 PLN03033 2-dehydro-3-deoxyphos 31.8 4E+02 0.0087 25.8 9.4 28 284-315 85-112 (290)
400 COG2403 Predicted GTPase [Gene 31.7 1.3E+02 0.0029 30.3 6.3 61 284-347 60-120 (449)
401 TIGR01496 DHPS dihydropteroate 31.6 4.5E+02 0.0098 24.8 14.3 63 185-247 20-93 (257)
402 COG0134 TrpC Indole-3-glycerol 31.6 2.5E+02 0.0053 26.8 8.0 90 248-342 71-162 (254)
403 PRK13587 1-(5-phosphoribosyl)- 31.5 2.3E+02 0.0049 26.4 7.8 64 270-340 64-127 (234)
404 PRK07107 inosine 5-monophospha 31.4 6.4E+02 0.014 26.5 14.2 122 188-315 241-380 (502)
405 TIGR01036 pyrD_sub2 dihydrooro 31.3 4.9E+02 0.011 25.7 10.6 127 186-315 152-316 (335)
406 PLN02460 indole-3-glycerol-pho 31.2 2E+02 0.0043 28.6 7.6 97 239-343 138-237 (338)
407 cd07941 DRE_TIM_LeuA3 Desulfob 31.2 4.7E+02 0.01 24.9 17.6 178 186-368 18-225 (273)
408 smart00052 EAL Putative diguan 31.2 3.5E+02 0.0075 24.3 9.1 63 284-348 144-214 (241)
409 PRK12822 phospho-2-dehydro-3-d 30.9 5.6E+02 0.012 25.7 11.7 121 233-363 57-207 (356)
410 PRK09427 bifunctional indole-3 30.9 1.9E+02 0.0042 29.9 7.8 78 261-343 89-166 (454)
411 KOG2368 Hydroxymethylglutaryl- 30.6 4.1E+02 0.0088 25.0 8.8 64 296-359 94-176 (316)
412 COG0502 BioB Biotin synthase a 30.3 5.6E+02 0.012 25.5 13.6 150 185-336 84-261 (335)
413 TIGR01305 GMP_reduct_1 guanosi 30.2 5.6E+02 0.012 25.5 15.5 118 191-316 109-241 (343)
414 PF02548 Pantoate_transf: Keto 30.1 3.1E+02 0.0066 26.2 8.4 74 212-292 60-137 (261)
415 PRK13396 3-deoxy-7-phosphohept 30.1 5.7E+02 0.012 25.6 13.6 129 227-367 98-240 (352)
416 TIGR00423 radical SAM domain p 30.0 2.1E+02 0.0046 27.7 7.7 71 185-258 36-119 (309)
417 PRK13307 bifunctional formalde 29.7 2.5E+02 0.0053 28.6 8.2 104 228-341 173-281 (391)
418 PRK02083 imidazole glycerol ph 29.6 3.1E+02 0.0068 25.6 8.6 61 269-336 61-121 (253)
419 TIGR01306 GMP_reduct_2 guanosi 29.4 5.6E+02 0.012 25.2 15.1 115 191-316 96-227 (321)
420 TIGR00262 trpA tryptophan synt 29.4 4.9E+02 0.011 24.6 11.7 61 285-349 86-153 (256)
421 COG2896 MoaA Molybdenum cofact 29.3 4.4E+02 0.0094 26.1 9.5 73 191-263 101-187 (322)
422 CHL00040 rbcL ribulose-1,5-bis 29.2 4E+02 0.0086 27.9 9.7 41 303-344 256-296 (475)
423 cd04729 NanE N-acetylmannosami 28.6 4.5E+02 0.0097 23.9 15.2 145 183-345 22-186 (219)
424 COG0106 HisA Phosphoribosylfor 28.4 2.5E+02 0.0055 26.5 7.4 66 269-341 62-127 (241)
425 PRK04169 geranylgeranylglycery 28.4 4.2E+02 0.0091 24.8 8.9 72 239-315 136-212 (232)
426 cd00946 FBP_aldolase_IIA Class 28.3 6.1E+02 0.013 25.3 13.3 119 192-316 114-275 (345)
427 TIGR01163 rpe ribulose-phospha 28.2 4.3E+02 0.0092 23.5 10.2 114 191-315 69-192 (210)
428 PRK12457 2-dehydro-3-deoxyphos 28.1 3.7E+02 0.0079 26.0 8.5 62 272-341 74-135 (281)
429 TIGR00734 hisAF_rel hisA/hisF 28.1 4.8E+02 0.01 24.0 10.5 101 204-315 102-212 (221)
430 cd07945 DRE_TIM_CMS Leptospira 28.0 5.4E+02 0.012 24.6 10.5 42 213-254 146-187 (280)
431 PLN02858 fructose-bisphosphate 27.6 7.1E+02 0.015 29.9 12.5 132 175-315 1169-1330(1378)
432 COG2200 Rtn c-di-GMP phosphodi 27.6 5.2E+02 0.011 24.2 10.1 63 284-348 147-217 (256)
433 PRK13361 molybdenum cofactor b 27.6 4.3E+02 0.0094 25.8 9.5 74 193-267 106-193 (329)
434 PRK07094 biotin synthase; Prov 27.5 5.7E+02 0.012 24.7 14.0 67 186-258 71-141 (323)
435 PRK15108 biotin synthase; Prov 27.3 4.9E+02 0.011 25.8 9.8 144 185-336 76-254 (345)
436 PRK09856 fructoselysine 3-epim 27.3 4.2E+02 0.009 24.7 9.1 20 325-344 131-150 (275)
437 TIGR02666 moaA molybdenum cofa 27.3 4.4E+02 0.0096 25.6 9.5 72 193-264 104-190 (334)
438 COG0269 SgbH 3-hexulose-6-phos 27.0 4.8E+02 0.01 24.2 8.7 105 228-343 4-113 (217)
439 PRK13802 bifunctional indole-3 26.9 3.5E+02 0.0076 29.8 9.2 93 246-343 73-167 (695)
440 TIGR00034 aroFGH phospho-2-deh 26.7 6.5E+02 0.014 25.1 12.1 122 231-362 50-201 (344)
441 PRK03170 dihydrodipicolinate s 26.6 5.7E+02 0.012 24.4 13.3 138 186-328 20-173 (292)
442 TIGR03551 F420_cofH 7,8-dideme 26.4 4.4E+02 0.0095 26.0 9.3 71 185-258 70-153 (343)
443 PRK08883 ribulose-phosphate 3- 26.3 5.2E+02 0.011 23.8 12.7 131 177-315 60-194 (220)
444 cd02808 GltS_FMN Glutamate syn 26.3 6E+02 0.013 25.7 10.4 81 274-354 201-303 (392)
445 PF01136 Peptidase_U32: Peptid 26.0 2.6E+02 0.0057 25.5 7.2 56 189-252 3-59 (233)
446 cd04737 LOX_like_FMN L-Lactate 25.9 6.7E+02 0.015 25.0 13.7 74 270-349 209-289 (351)
447 COG1103 Archaea-specific pyrid 25.9 5.7E+02 0.012 24.9 9.2 146 162-345 43-195 (382)
448 PRK00208 thiG thiazole synthas 25.9 5.8E+02 0.013 24.2 11.0 152 186-348 22-187 (250)
449 PF01276 OKR_DC_1: Orn/Lys/Arg 25.8 1.3E+02 0.0028 30.9 5.4 135 184-343 61-204 (417)
450 COG1748 LYS9 Saccharopine dehy 25.8 3.5E+02 0.0075 27.5 8.4 62 296-361 80-141 (389)
451 cd06557 KPHMT-like Ketopantoat 25.6 5.1E+02 0.011 24.5 9.1 71 213-290 57-131 (254)
452 cd02810 DHOD_DHPD_FMN Dihydroo 25.5 5.8E+02 0.013 24.1 15.0 21 328-348 233-255 (289)
453 PF00809 Pterin_bind: Pterin b 25.4 5.1E+02 0.011 23.5 9.5 92 187-291 18-121 (210)
454 TIGR00126 deoC deoxyribose-pho 25.4 5.3E+02 0.012 23.7 16.8 116 186-309 68-198 (211)
455 TIGR03572 WbuZ glycosyl amidat 25.1 5.3E+02 0.012 23.5 10.1 88 244-338 31-123 (232)
456 PRK04128 1-(5-phosphoribosyl)- 25.1 5.5E+02 0.012 23.7 13.9 131 176-321 74-217 (228)
457 COG0502 BioB Biotin synthase a 25.0 3.7E+02 0.008 26.7 8.2 24 322-345 178-201 (335)
458 PF00793 DAHP_synth_1: DAHP sy 25.0 94 0.002 29.8 4.0 106 230-343 17-138 (270)
459 PRK04208 rbcL ribulose bisopho 24.9 7.3E+02 0.016 25.9 10.7 42 302-344 248-289 (468)
460 PRK11197 lldD L-lactate dehydr 24.8 6.3E+02 0.014 25.6 10.0 77 270-354 233-318 (381)
461 TIGR00007 phosphoribosylformim 24.7 3.9E+02 0.0083 24.4 8.1 61 270-337 60-120 (230)
462 cd04727 pdxS PdxS is a subunit 24.6 4.1E+02 0.0089 25.7 8.2 97 192-315 123-224 (283)
463 PRK08445 hypothetical protein; 24.6 3.2E+02 0.0069 27.2 7.9 70 186-258 74-156 (348)
464 COG5014 Predicted Fe-S oxidore 24.6 5.2E+02 0.011 23.3 11.1 55 184-239 73-128 (228)
465 PRK11613 folP dihydropteroate 24.6 6.4E+02 0.014 24.3 10.1 96 235-341 30-138 (282)
466 PRK01130 N-acetylmannosamine-6 24.5 5.3E+02 0.012 23.4 15.3 148 182-346 17-183 (221)
467 PLN02334 ribulose-phosphate 3- 24.5 5.5E+02 0.012 23.5 11.0 120 184-315 74-201 (229)
468 PRK05692 hydroxymethylglutaryl 24.5 6.4E+02 0.014 24.3 14.7 79 239-318 151-233 (287)
469 PRK11613 folP dihydropteroate 24.4 6.5E+02 0.014 24.3 14.8 143 185-343 35-218 (282)
470 PRK05198 2-dehydro-3-deoxyphos 24.4 6.3E+02 0.014 24.2 12.1 92 240-341 21-129 (264)
471 TIGR01859 fruc_bis_ald_ fructo 24.3 6.4E+02 0.014 24.2 15.1 122 192-318 88-232 (282)
472 PRK12653 fructose-6-phosphate 24.2 5.8E+02 0.012 23.6 12.7 114 218-340 41-161 (220)
473 PRK14057 epimerase; Provisiona 24.0 6.3E+02 0.014 24.0 9.8 162 177-359 21-212 (254)
474 PRK08318 dihydropyrimidine deh 23.7 7.8E+02 0.017 24.9 16.0 85 228-314 98-198 (420)
475 PF00016 RuBisCO_large: Ribulo 23.4 2.6E+02 0.0057 27.4 6.8 43 301-344 101-143 (309)
476 COG1619 LdcA Uncharacterized p 23.3 3.2E+02 0.0069 26.9 7.4 61 187-250 25-95 (313)
477 PF01791 DeoC: DeoC/LacD famil 23.2 5.9E+02 0.013 23.4 10.2 116 191-309 79-222 (236)
478 COG1453 Predicted oxidoreducta 23.0 8E+02 0.017 24.8 12.6 56 286-341 143-201 (391)
479 TIGR00010 hydrolase, TatD fami 22.8 3E+02 0.0066 25.1 7.1 19 326-344 111-129 (252)
480 PRK00507 deoxyribose-phosphate 22.7 6.1E+02 0.013 23.4 16.9 132 186-330 72-215 (221)
481 PRK05096 guanosine 5'-monophos 22.6 7.8E+02 0.017 24.6 12.8 122 191-316 110-242 (346)
482 PRK07028 bifunctional hexulose 22.5 8.3E+02 0.018 24.8 16.9 155 181-345 9-171 (430)
483 TIGR03699 mena_SCO4550 menaqui 22.5 4.3E+02 0.0094 25.9 8.4 48 185-232 72-123 (340)
484 PRK04180 pyridoxal biosynthesi 22.5 7.3E+02 0.016 24.2 10.7 105 195-316 31-148 (293)
485 PTZ00170 D-ribulose-5-phosphat 22.4 6.2E+02 0.013 23.3 14.1 128 181-321 12-153 (228)
486 PRK04180 pyridoxal biosynthesi 22.3 6.4E+02 0.014 24.5 9.0 41 270-315 191-233 (293)
487 KOG4141 DNA repair and recombi 22.1 1.2E+02 0.0026 27.9 3.8 42 44-93 84-129 (222)
488 KOG0259 Tyrosine aminotransfer 22.0 1.4E+02 0.0031 30.2 4.6 47 295-341 186-237 (447)
489 PRK05301 pyrroloquinoline quin 22.0 7.8E+02 0.017 24.4 11.9 22 322-343 140-161 (378)
490 cd00959 DeoC 2-deoxyribose-5-p 22.0 5.9E+02 0.013 22.9 17.5 116 186-309 67-197 (203)
491 TIGR00433 bioB biotin syntheta 22.0 6.8E+02 0.015 23.7 12.3 69 185-258 62-135 (296)
492 TIGR00696 wecB_tagA_cpsF bacte 22.0 5.7E+02 0.012 22.7 10.9 75 191-268 38-112 (177)
493 PRK09279 pyruvate phosphate di 21.9 8E+02 0.017 27.9 11.0 86 232-321 764-861 (879)
494 TIGR03471 HpnJ hopanoid biosyn 21.9 8.8E+02 0.019 24.9 13.6 129 213-361 229-365 (472)
495 TIGR02351 thiH thiazole biosyn 21.7 4.1E+02 0.0089 26.5 8.1 67 185-258 103-174 (366)
496 PLN02591 tryptophan synthase 21.7 6.9E+02 0.015 23.6 11.4 57 282-341 74-136 (250)
497 COG4451 RbcS Ribulose bisphosp 21.5 4.4E+02 0.0095 22.1 6.6 24 179-202 13-36 (127)
498 PRK12344 putative alpha-isopro 21.5 9.7E+02 0.021 25.3 17.7 168 186-359 25-222 (524)
499 cd00950 DHDPS Dihydrodipicolin 21.3 7E+02 0.015 23.6 13.3 129 186-318 19-162 (284)
500 PTZ00170 D-ribulose-5-phosphat 21.3 6.5E+02 0.014 23.2 11.8 122 184-315 74-200 (228)
No 1
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=100.00 E-value=1.6e-70 Score=548.26 Aligned_cols=354 Identities=25% Similarity=0.398 Sum_probs=317.3
Q ss_pred EeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHH-HHHHHHcCCCCC
Q 015289 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKAS-EACEVLKESPAM 124 (409)
Q Consensus 48 I~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~--~~~~~e~~~~~~~~~~-~~~~~l~g~~~~ 124 (409)
|++|+++++++|++.||+++.++...++.++|||+|++|++||||+.+. |.+++++.......++ .++|.++|+++.
T Consensus 1 I~~i~~~~~~~pl~~~~~~~~~~~~~~~~~~V~v~t~~G~~G~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~ 80 (368)
T TIGR02534 1 IQSVETILVDVPTIRPHKLATTTMTEQTLVLVRIRTEDGVIGYGEGTTIGGLWWGGESPETIKANIDTYLAPVLVGRDAT 80 (368)
T ss_pred CeEEEEEEEeccccCceEEeeEEEeeccEEEEEEEECCCCeEEEecCCCCCCccCCCCHHHHHHHHHHhhHHHHcCCChh
Confidence 7899999999999999999999999999999999999999999999865 4566666554444454 478999999999
Q ss_pred CHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHH-HcCC
Q 015289 125 ALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYR-KQGF 202 (409)
Q Consensus 125 ~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~-~~Gf 202 (409)
+++.+++.+.+.+.++ ..+++|||+||||++||.+|+|+|+||||. +++|++|++++..++++..+.++++. ++||
T Consensus 81 ~~~~~~~~~~~~~~~~--~~a~said~AlwDl~gK~~g~Pv~~LLGg~~r~~v~~~~~~~~~~~~~~~~~~~~~~~~~Gf 158 (368)
T TIGR02534 81 EIAAIMADLEKVVAGN--RFAKAAVDTALHDAQARRLGVPVSELLGGRVRDSVDVTWTLASGDTDRDIAEAEERIEEKRH 158 (368)
T ss_pred hHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceEEEEEEeCCCHHHHHHHHHHHHHhcCc
Confidence 9999998887655443 247999999999999999999999999996 67899999888777776666666655 5899
Q ss_pred CeEEEecC-CChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHH
Q 015289 203 TTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 280 (409)
Q Consensus 203 ~~~KiKvG-~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~ 280 (409)
++||+|+| .++++|+++|+++|+. ++++.|++|+|++|++++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 159 ~~~KiKvg~~~~~~d~~~v~~~re~~g~~~~l~~DaN~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~d~~~~~~l~~- 235 (368)
T TIGR02534 159 RSFKLKIGARDPADDVAHVVAIAKALGDRASVRVDVNAAWDERTALHYLPQLADAGV--ELIEQPTPAENREALARLTR- 235 (368)
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCh--hheECCCCcccHHHHHHHHH-
Confidence 99999998 4788999999999997 7999999999999999999999999999986 59999999999999999874
Q ss_pred hhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHc
Q 015289 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSA 359 (409)
Q Consensus 281 ~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaa 359 (409)
++++||++||++++++++.++++.+++|++|+|++++| ++++++++++|+++|+++++||+++|+++.++++|+++
T Consensus 236 ---~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~i~~aa~~h~~a 312 (368)
T TIGR02534 236 ---RFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGPIGTIASAHFFA 312 (368)
T ss_pred ---hCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred cCCCCce-eccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 360 GLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 360 a~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
+++++.+ .|+++++++.+|++.+++.++||++.+|++||||+++|++.++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~~d~~~~~ 363 (368)
T TIGR02534 313 TFPALSFGTELFGPLLLKDEILTEPLQYEDFQLHLPQGPGLGVEVDEDKVN 363 (368)
T ss_pred hCCCCccccccccHHHhhhccccCCceeeCCEEecCCCCcCCcccCHHHHH
Confidence 9999877 5777776667788888899999999999999999999998763
No 2
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=2.7e-70 Score=546.39 Aligned_cols=355 Identities=26% Similarity=0.397 Sum_probs=321.4
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCC--ccCcccHHHHHHHHH-HHHHHHcCCCC
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQTAMVKAS-EACEVLKESPA 123 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~--~~~~e~~~~~~~~~~-~~~~~l~g~~~ 123 (409)
||++++++++++|++.||.++.++.+.++.++|||+|++|.+||||+.+.+ .+++++...+...++ .+.|.++|+++
T Consensus 1 ~I~~i~~~~~~lpl~~~~~~~~~~~~~~~~~~V~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~G~~~ 80 (365)
T cd03318 1 KIEAIETTIVDLPTRRPHQFAGTTMHTQSLVLVRLTTSDGVVGIGEATTPGGPAWGGESPETIKAIIDRYLAPLLIGRDA 80 (365)
T ss_pred CeEEEEEEEEeccccCceEEeeeeEeecceEEEEEEECCCCeEEEecCCCCCCccCCCCHHHHHHHHHHhhHHHHcCCCh
Confidence 699999999999999999999999999999999999999999999998653 455666555444554 46899999999
Q ss_pred CCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHHcC-
Q 015289 124 MALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQG- 201 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~G- 201 (409)
.+++.+++.++....++ ..+++||||||||++||..|+|+|+||||. ++++|+|++++..+++++.+++++++++|
T Consensus 81 ~~~~~~~~~l~~~~~~~--~~a~said~AlwDl~gK~~g~Pl~~LLGg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~ 158 (365)
T cd03318 81 TNIGAAMALLDRAVAGN--LFAKAAIEMALLDAQGRRLGLPVSELLGGRVRDSLPVAWTLASGDTERDIAEAEEMLEAGR 158 (365)
T ss_pred HHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHhHcCCCHHHHcCCCcCCceEEEEEEeCCCHHHHHHHHHHHHhCCC
Confidence 99999998887754443 347999999999999999999999999996 67899999888778888888888899999
Q ss_pred CCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHH
Q 015289 202 FTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279 (409)
Q Consensus 202 f~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~ 279 (409)
|++||+|+|. ++++|+++|+++|+. ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 159 f~~~KiKvg~~~~~~d~~~v~avr~~~g~~~~l~iDaN~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~~~~~~~~l~~ 236 (365)
T cd03318 159 HRRFKLKMGARPPADDLAHVEAIAKALGDRASVRVDVNQAWDESTAIRALPRLEAAGV--ELIEQPVPRENLDGLARLRS 236 (365)
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCc--ceeeCCCCcccHHHHHHHHh
Confidence 9999999994 788999999999998 6799999999999999999999999999987 49999999999999999975
Q ss_pred HhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHH
Q 015289 280 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 358 (409)
Q Consensus 280 ~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hla 358 (409)
++++||++||++.++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++||+++++++.++++|++
T Consensus 237 ----~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s~i~~aa~~hla 312 (365)
T cd03318 237 ----RNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLESSIGTAASAHLF 312 (365)
T ss_pred ----hcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchhHHHHHHHHHHH
Confidence 68999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred ccCCCCce-eccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 359 AGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 359 aa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
+++++..+ .|++.++.+.+|++.+++.++||++.+|++||||+++|++.|+
T Consensus 313 aa~~~~~~~~e~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~~d~~~l~ 364 (365)
T cd03318 313 ATLPSLPFGCELFGPLLLAEDLLEEPLAYRDGELHVPTGPGLGVRLDEDKVR 364 (365)
T ss_pred HhCCCCcccccccchHhhhcccccCCceeECCEEeCCCCCcCCcccCHHHhc
Confidence 99998767 6777776666788878889999999999999999999999875
No 3
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=1.3e-67 Score=525.14 Aligned_cols=346 Identities=25% Similarity=0.407 Sum_probs=308.9
Q ss_pred EEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHcCCCCCCHH
Q 015289 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESPAMALG 127 (409)
Q Consensus 51 i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~ 127 (409)
|+++++++|+++||+++.++.+.++.++|||+|++|++||||+.+. +++++|+...+...+++ +.|.++|+++.+++
T Consensus 1 ~~~~~~~~pl~~p~~~~~~~~~~~~~~~Vrv~t~~G~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~p~l~g~~~~~~~ 80 (354)
T cd03317 1 IELFHVRMPLKFPFETSFGTLNEREFLIVELTDEEGITGYGEVVAFEGPFYTEETNATAWHILKDYLLPLLLGREFSHPE 80 (354)
T ss_pred CEEEEEEecccCceEccceEEEeeeEEEEEEEECCCCeEEEecCCCCCCcccCCCHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 5789999999999999999999999999999999999999999864 56777877666666654 68999999999999
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCH-HHHHHHHHHHHHcCCCeEE
Q 015289 128 SVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSP-AEAAELASKYRKQGFTTLK 206 (409)
Q Consensus 128 ~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~-~~~~~~~~~~~~~Gf~~~K 206 (409)
.+++.+.+ +.++ ..+++||||||||++||.+|+|+|+||||.++++|+|.+++..++ +++.+++++++++||++||
T Consensus 81 ~~~~~~~~-~~~~--~~a~aaid~AlwDl~gk~~g~Pv~~LLGg~~~~v~~~~s~~~~~~~~~~~~~~~~~~~~Gf~~~K 157 (354)
T cd03317 81 EVSERLAP-IKGN--NMAKAGLEMAVWDLYAKAQGQSLAQYLGGTRDSIPVGVSIGIQDDVEQLLKQIERYLEEGYKRIK 157 (354)
T ss_pred HHHHHHHH-hcCC--hHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCeEEeeEEEeCCCcHHHHHHHHHHHHHcCCcEEE
Confidence 99988876 3443 358999999999999999999999999998889999999887765 8899999999999999999
Q ss_pred EecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCC
Q 015289 207 LKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286 (409)
Q Consensus 207 iKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ 286 (409)
+|++. +.|++++++||+..+++.|++|+|++|+.++|. ++++|+++++ .|||||++++|++++++|++ +++
T Consensus 158 iKv~~--~~d~~~l~~vr~~~g~~~l~lDaN~~~~~~~a~-~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ 228 (354)
T cd03317 158 LKIKP--GWDVEPLKAVRERFPDIPLMADANSAYTLADIP-LLKRLDEYGL--LMIEQPLAADDLIDHAELQK----LLK 228 (354)
T ss_pred EecCh--HHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHH-HHHHhhcCCc--cEEECCCChhHHHHHHHHHh----hcC
Confidence 99974 689999999999855999999999999999985 8999999987 49999999999999999874 789
Q ss_pred CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCc
Q 015289 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFK 365 (409)
Q Consensus 287 ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~ 365 (409)
+||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+|+++.++++|++ ++++..
T Consensus 229 ~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~~es~l~~~a~~hla-~~~~~~ 307 (354)
T cd03317 229 TPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGMLESGIGRAHNVALA-SLPNFT 307 (354)
T ss_pred CCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEecCcccchHHHHHHHHHH-hCCCCC
Confidence 99999999999999999999999999999999998 9999999999999999999999999999999999996 566655
Q ss_pred ee-ccccc-cccccCCCCCCeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 366 FI-DLDTP-LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 366 ~~-e~~~p-~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
+. +++.. ..+.+|++.++++++||++.+|++||||+++|++.|+
T Consensus 308 ~~~~~~~~~~~~~~dl~~~~~~~~~G~~~~p~~pGlG~~~d~~~l~ 353 (354)
T cd03317 308 YPGDISASSRYFEEDIITPPFELENGIISVPTGPGIGVTVDREALK 353 (354)
T ss_pred CccccCcchhhhhhccccCCeEeeCCEEECCCCCcCceecCHHHhc
Confidence 53 44332 2456788877889999999999999999999999874
No 4
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=1e-67 Score=524.33 Aligned_cols=339 Identities=22% Similarity=0.313 Sum_probs=294.8
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCCH
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMAL 126 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~ 126 (409)
||++++++.+++|++.||..+..++..++.++|||+| +|++||||+. +.+.....+ .+.+.|.|+|+++.++
T Consensus 1 ~I~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~~-~G~~G~Ge~~-----~~~~~~~~i--~~~~~p~liG~d~~~~ 72 (352)
T cd03328 1 AVERVEARAYTVPTDAPEADGTLAWDATTLVLVEVRA-GGRTGLGYTY-----ADAAAAALV--DGLLAPVVEGRDALDP 72 (352)
T ss_pred CeeEEEEEEEEccCCCcccCCccceeeeeEEEEEEEc-CCcEEEeCCC-----ChHHHHHHH--HHHHHHHhcCCCcccH
Confidence 7999999999999999996665555678899999997 7999999863 223322222 1347899999999999
Q ss_pred HHHHHHHHhhcC----CChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecC--CCHHHHHHHHHHHHHc
Q 015289 127 GSVFGVVAGLLP----GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--VSPAEAAELASKYRKQ 200 (409)
Q Consensus 127 ~~~~~~~~~~~~----g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~--~~~~~~~~~~~~~~~~ 200 (409)
+.+|+.+++... +.....+++||||||||++||.+|+|||+||||.+++||+|.+++. .+++++.+++++++++
T Consensus 73 ~~l~~~~~~~~~~~~~~g~~~~a~aaiD~AlwDl~gK~~g~Pv~~LLGg~~~~v~~y~s~~~~~~~~e~~~~~a~~~~~~ 152 (352)
T cd03328 73 PAAWEAMQRAVRNAGRPGVAAMAISAVDIALWDLKARLLGLPLARLLGRAHDSVPVYGSGGFTSYDDDRLREQLSGWVAQ 152 (352)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcCCCCCeEEEEecCCCCCCHHHHHHHHHHHHHC
Confidence 999999976421 1122368999999999999999999999999998889999988653 3688899999999999
Q ss_pred CCCeEEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHH
Q 015289 201 GFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279 (409)
Q Consensus 201 Gf~~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~ 279 (409)
||+++|+|+|.++++|+++++++|++ ++++.|++|+|++|++++|+++++.|+++++ .|+|||++++|+++|++|++
T Consensus 153 Gf~~~Kikvg~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~--~~~EeP~~~~d~~~~~~l~~ 230 (352)
T cd03328 153 GIPRVKMKIGRDPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALALARAFADEGV--TWFEEPVSSDDLAGLRLVRE 230 (352)
T ss_pred CCCEEEeecCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHhCc--chhhCCCChhhHHHHHHHHh
Confidence 99999999998889999999999997 7899999999999999999999999999987 49999999999999999974
Q ss_pred Hhhcc--CCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHH
Q 015289 280 IAKDK--FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356 (409)
Q Consensus 280 ~~~~~--~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~h 356 (409)
+ +++||++||++++.++++++++.+++|++|+|++|+| ++++++++++|+++|+++++|++ .++++|
T Consensus 231 ----~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit~~~~ia~~A~a~gi~~~~h~~------~~a~~h 300 (352)
T cd03328 231 ----RGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGFLQAAALAAAHHVDLSAHCA------PALHAH 300 (352)
T ss_pred ----hCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccCch------HHHHHH
Confidence 6 7799999999999999999999999999999999998 99999999999999999999984 357899
Q ss_pred HHccCCCCceeccccc-cccccCCCCCCeeeeCcEEecCC-CCCcccccCC
Q 015289 357 LSAGLGCFKFIDLDTP-LLLSEDPVLDGYEVSGAVYKFTN-ARGHGGFLHW 405 (409)
Q Consensus 357 laaa~~~~~~~e~~~p-~~~~~d~~~~~~~~~~G~i~~p~-~PGlG~~~d~ 405 (409)
+++++||+.+.|+..+ ..+.++++.++++++||++.+|+ +||||+++||
T Consensus 301 l~aa~~n~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~PGLGv~~d~ 351 (352)
T cd03328 301 VACAVPRLRHLEWFHDHVRIERMLFDGAPDPSGGALRPDLSRPGLGLELRA 351 (352)
T ss_pred HHHhCCCCccceecccchhhhHHhccCCCcccCCEEeCCCCCCccceecCC
Confidence 9999999888776432 23345666777888999999987 7999999997
No 5
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=7.8e-68 Score=526.38 Aligned_cols=345 Identities=20% Similarity=0.264 Sum_probs=301.3
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (409)
|||++++++++++|+++||.++.++.+.++.++|||+|++|++||||+.. +++++.+.+...++.+.|.|+|++. +
T Consensus 1 ~~I~~v~~~~~~~pl~~~~~~~~~~~~~~~~v~V~v~t~~G~~G~Ge~~~---~~~~~~~~~~~~~~~l~p~LiG~~~-~ 76 (355)
T cd03321 1 VLITGLRARAVNVPMQYPVHTSVGTVATAPLVLIDLATDEGVTGHSYLFT---YTPAALKSLKQLLDDMAALLVGEPL-A 76 (355)
T ss_pred CeeEEEEEEEEEccCCCccccccceeccCcEEEEEEEECCCCeEEEeeec---CCCCcHHHHHHHHHHHHHHhCCCCC-C
Confidence 79999999999999999999999998889999999999999999999653 3455544444444568999999975 5
Q ss_pred HHHHHHHHHhhc---CC-ChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcC
Q 015289 126 LGSVFGVVAGLL---PG-HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQG 201 (409)
Q Consensus 126 ~~~~~~~~~~~~---~g-~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~G 201 (409)
.+++++.+.+.. .+ .....+++||||||||++||.+|+|||+||||.++++|+|.+++..+++++.+++++++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pv~~LlGg~~~~v~~y~s~~~~~~~~~~~~a~~~~~~G 156 (355)
T cd03321 77 PAELERALAKRFRLLGYTGLVRMAAAGIDMAAWDALAKVHGLPLAKLLGGNPRPVQAYDSHGLDGAKLATERAVTAAEEG 156 (355)
T ss_pred hHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeeEEEeCCCChHHHHHHHHHHHHHhh
Confidence 676766654432 11 12246899999999999999999999999999888999999988888899999999999999
Q ss_pred CCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHH
Q 015289 202 FTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279 (409)
Q Consensus 202 f~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~ 279 (409)
|++||+|+|. +++.|+++++++|+. +|++.|++|+|++|+.++|+++++.|+++++ .|||||++++|+++|++|++
T Consensus 157 f~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~ 234 (355)
T cd03321 157 FHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQEGL--TWIEEPTLQHDYEGHARIAS 234 (355)
T ss_pred hHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCCCCcCHHHHHHHHHHHHcCCC--CEEECCCCCcCHHHHHHHHH
Confidence 9999999984 688999999999997 7999999999999999999999999999987 49999999999999999975
Q ss_pred HhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHH
Q 015289 280 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 358 (409)
Q Consensus 280 ~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hla 358 (409)
++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. + .++|++
T Consensus 235 ----~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~~h~~~--~----~~~h~~ 304 (355)
T cd03321 235 ----ALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPMSSHLFQ--E----ISAHLL 304 (355)
T ss_pred ----hcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCeecccchH--H----HHHHHH
Confidence 68899999999999999999999999999999999998 999999999999999999999852 2 468999
Q ss_pred ccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 359 AGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 359 aa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
+++++..++|+.. +..+++.++++++||++.+|++||||+++|+++|+
T Consensus 305 aa~~~~~~~e~~~---~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~ 352 (355)
T cd03321 305 AVTPTAHWLEYVD---WAGAILEPPLKFEDGNAVIPDEPGNGIIWREKAVR 352 (355)
T ss_pred HhCCCcceeeccc---hHHHHhcCCcEEECCEEECCCCCcCCcccCHHHHH
Confidence 9999887776421 22345567789999999999999999999999763
No 6
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=9.6e-67 Score=523.67 Aligned_cols=345 Identities=19% Similarity=0.233 Sum_probs=297.3
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCC-CC
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA-MA 125 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~-~~ 125 (409)
||++|+++++.+|++.||+++.+....++.++|||+||+|++||||++.. .+... .+.+++|.++|.++ .+
T Consensus 1 ~I~~i~~~~~~~p~~~p~~~~~~~~~~~~~~~Vrv~td~G~~G~Ge~~~~----~~~~~----~~~~~~~~llg~~~~~~ 72 (395)
T cd03323 1 KITEMRVTPVAGHDSPLLNLSGAHEPFFTRNIVELTDDNGNTGVGESPGG----AEALE----ALLEAARSLVGGDVFGA 72 (395)
T ss_pred CeEEEEEEEEeccCCccccccccCCCcceEEEEEEEECCCCeeccccCCC----HHHHH----HHHHHhHHHhCCCcchh
Confidence 69999999999999999999877767789999999999999999997631 12222 23457788888777 57
Q ss_pred HHHHHHHHHhhcC--CC-----------hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeec--------
Q 015289 126 LGSVFGVVAGLLP--GH-----------QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP-------- 183 (409)
Q Consensus 126 ~~~~~~~~~~~~~--g~-----------~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~-------- 183 (409)
.+.+|+.+++... ++ ....+++||||||||++||.+|+|+|+||||. ++++|+|.++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGG~~r~~v~~ya~~~~~~~~~~~ 152 (395)
T cd03323 73 YLAVLESVRVAFADRDAGGRGLQTFDLRTTVHVVTAFEVALLDLLGQALGVPVADLLGGGQRDSVPFLAYLFYKGDRHKT 152 (395)
T ss_pred hHHHHHHHHHHHhcccccccCccccchhHHHHHHHHHHHHHHHHhhhhcCCCHHHHhCCCccCeEEEEEEeeeccccccc
Confidence 8888988876431 11 13568999999999999999999999999996 77999998642
Q ss_pred -------------CCCHHHHHHHHHHHHH-cCCCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHH
Q 015289 184 -------------IVSPAEAAELASKYRK-QGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEV 248 (409)
Q Consensus 184 -------------~~~~~~~~~~~~~~~~-~Gf~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~ 248 (409)
..+++++.++++++++ +||++||+|+|. ++++|+++++++|++.+++.|++|+|++|++++|+++
T Consensus 153 ~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avRea~~~~~l~vDaN~~w~~~~A~~~ 232 (395)
T cd03323 153 DLPYPWFRDRWGEALTPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAVKALAEAFPGARLRLDPNGAWSLETAIRL 232 (395)
T ss_pred cccccccccccccCCCHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHHHHHHhCCCCcEEEeCCCCcCHHHHHHH
Confidence 3478889899988875 699999999994 6789999999999987899999999999999999999
Q ss_pred HHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHH
Q 015289 249 LEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALE 327 (409)
Q Consensus 249 ~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~ 327 (409)
+++|++ ++. |||||++ |+++|++|++ ++++||++||++++.++++++++.+++|++|+|++++| ++++++
T Consensus 233 ~~~l~~-~l~--~iEeP~~--d~~~~~~L~~----~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~k 303 (395)
T cd03323 233 AKELEG-VLA--YLEDPCG--GREGMAEFRR----ATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVR 303 (395)
T ss_pred HHhcCc-CCC--EEECCCC--CHHHHHHHHH----hcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHH
Confidence 999999 874 9999998 8999999875 68899999999999999999999999999999999998 999999
Q ss_pred HHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCce-eccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCC
Q 015289 328 IIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWD 406 (409)
Q Consensus 328 i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d 406 (409)
++++|+++|+++++|++.+++++.++++|++++++|+.+ +|...++...++++.++++++||++.+|++||||+++|++
T Consensus 304 ia~~A~~~gi~~~~h~~~e~~i~~aa~~hlaaa~~~~~~~~d~~~~~~~~~~~~~~~~~~~~G~~~vp~~PGLGv~~d~~ 383 (395)
T cd03323 304 VAQVCETWGLGWGMHSNNHLGISLAMMTHVAAAAPGLITACDTHWIWQDGQVITGEPLRIKDGKVAVPDKPGLGVELDRD 383 (395)
T ss_pred HHHHHHHcCCeEEEecCcccHHHHHHHHHHHHhCCCcccccccchhhhccccccCCCceeeCCEEECCCCCcCCccCCHH
Confidence 999999999999999998999999999999999998765 3322232223345556788999999999999999999998
Q ss_pred Cc
Q 015289 407 NI 408 (409)
Q Consensus 407 ~~ 408 (409)
.|
T Consensus 384 ~l 385 (395)
T cd03323 384 KL 385 (395)
T ss_pred HH
Confidence 76
No 7
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=100.00 E-value=7.5e-66 Score=519.58 Aligned_cols=339 Identities=19% Similarity=0.222 Sum_probs=290.3
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHH-HHHHHHHcCCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPAM 124 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~~ 124 (409)
|||++|+++.+ .| .++.++|||+|++|++||||+... +++. .....+ +.++|.|+|+++.
T Consensus 1 mkI~~v~~~~~-----~~---------~~~~vlVri~td~G~~G~GE~~~~----~~~~-~~~~~~~~~l~p~l~G~d~~ 61 (404)
T PRK15072 1 MKIVDAEVIVT-----CP---------GRNFVTLKITTDDGVTGLGDATLN----GREL-AVASYLQDHVCPLLIGRDAH 61 (404)
T ss_pred CeeEEEEEEEE-----CC---------CCcEEEEEEEeCCCCeEEEecccC----CchH-HHHHHHHHHHHHHcCCCChh
Confidence 89999999753 11 135689999999999999998531 2221 122233 3588999999999
Q ss_pred CHHHHHHHHHhhc---CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHHc
Q 015289 125 ALGSVFGVVAGLL---PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQ 200 (409)
Q Consensus 125 ~~~~~~~~~~~~~---~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~ 200 (409)
+++.+++.+.+.. ++.....+++||||||||++||.+|+|||+||||. ++++++|.+....+++++.+++++++++
T Consensus 62 ~~e~~~~~l~~~~~~~~~~~~~~a~aaID~AlwDl~gK~~g~Pl~~LLGG~~r~~v~~y~~~~~~~~~~~~~~a~~~~~~ 141 (404)
T PRK15072 62 RIEDIWQYLYRGAYWRRGPVTMSAIAAVDMALWDIKAKAAGMPLYQLLGGASREGVMVYGHANGRDIDELLDDVARHLEL 141 (404)
T ss_pred HHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcCCCccCceEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 9999999997631 23233568999999999999999999999999996 6789999765556788888999999999
Q ss_pred CCCeEEEecCCC-----------------------------------hhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHH
Q 015289 201 GFTTLKLKVGKN-----------------------------------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQE 244 (409)
Q Consensus 201 Gf~~~KiKvG~~-----------------------------------~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~ 244 (409)
||++||+|+|.+ ++.|+++|++||+. ++++.|++|+|++||+++
T Consensus 142 Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~G~~~~l~vDaN~~w~~~~ 221 (404)
T PRK15072 142 GYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKFGFDLHLLHDVHHRLTPIE 221 (404)
T ss_pred CCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhhCCCceEEEECCCCCCHHH
Confidence 999999999721 13457899999997 799999999999999999
Q ss_pred HHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HH
Q 015289 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VL 323 (409)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~ 323 (409)
|++++++|+++++ .|||||++++|+++|++|++ ++++||++||++++.++++++++.+++|++|+|++++| ++
T Consensus 222 A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~L~~----~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit 295 (404)
T PRK15072 222 AARLGKSLEPYRL--FWLEDPTPAENQEAFRLIRQ----HTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGIT 295 (404)
T ss_pred HHHHHHhccccCC--cEEECCCCccCHHHHHHHHh----cCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHH
Confidence 9999999999987 49999999999999999974 68899999999999999999999999999999999997 99
Q ss_pred HHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccc
Q 015289 324 GALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGF 402 (409)
Q Consensus 324 ~~~~i~~~A~~~gi~~~~~~~~-es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~ 402 (409)
++++++++|+++|+++++|++. +|+++.++++|++++++|+.+.|++.+..+.++++.+++.++||++.+|++||||++
T Consensus 296 ~~~kia~lA~~~gi~~~~h~~~~~s~l~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~G~l~vpd~PGLGi~ 375 (404)
T PRK15072 296 HLRRIADFAALYQVRTGSHGPTDLSPVCMAAALHFDLWVPNFGIQEYMGHSEETLEVFPHSYTFEDGYLHPGDAPGLGVD 375 (404)
T ss_pred HHHHHHHHHHHcCCceeeccCcccchHHHHHHHHHHHhccccceeeecccchhhHhhcCCCCeEECCEEECCCCCCCCee
Confidence 9999999999999999999865 699999999999999999888887654334467777788999999999999999999
Q ss_pred cCCCCcC
Q 015289 403 LHWDNIA 409 (409)
Q Consensus 403 ~d~d~~~ 409 (409)
+|+++|+
T Consensus 376 ~d~~~l~ 382 (404)
T PRK15072 376 FDEKLAA 382 (404)
T ss_pred ECHHHHh
Confidence 9998763
No 8
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=1.2e-65 Score=513.00 Aligned_cols=343 Identities=20% Similarity=0.263 Sum_probs=295.5
Q ss_pred eEeEEEEEEEEecCccceee----ccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCC
Q 015289 47 DVQRAENRPLNVPLIAPFTI----ATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~----a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~ 122 (409)
||++++++.+++|+++|+.+ +.++...++.++|||+|++|++||||+.+. + .... ...+.+.|.|+|++
T Consensus 1 ~I~~i~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~Vri~td~G~~G~G~~~~~--~---~~~~--~~~~~l~p~liG~d 73 (368)
T cd03329 1 KITDVEVTVFEYPTQPVSFDGGHHHPGPAGTRKLALLTIETDEGAKGHAFGGRP--V---TDPA--LVDRFLKKVLIGQD 73 (368)
T ss_pred CeEEEEEEEEEeecCcccccccccCCCCCccceEEEEEEEECCCCeEEEecCCc--h---hHHH--HHHHHHHHhcCCCC
Confidence 69999999999999998766 577888899999999999999999996431 1 1111 12245789999999
Q ss_pred CCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecC-------CCHHHHHHHHH
Q 015289 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI-------VSPAEAAELAS 195 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~-------~~~~~~~~~~~ 195 (409)
+.+++.+|+.+.+.+++.. ..|++||||||||++||.+|+|||+||||.+++||+|++++. .+++++.+.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~-~~A~said~AlwDl~gk~~g~Pl~~LLGg~~~~v~~y~s~~~~~~~~~~~~~~~~~~~a~ 152 (368)
T cd03329 74 PLDRERLWQDLWRLQRGLT-DRGLGLVDIALWDLAGKYLGLPVHRLLGGYREKIPAYASTMVGDDLEGLESPEAYADFAE 152 (368)
T ss_pred hhHHHHHHHHHHHHhcCcc-hhHHHHHHHHHHHHhhhhcCCcHHHHhhccccceeEEEecCCCcccccCCCHHHHHHHHH
Confidence 9999999999987665532 358999999999999999999999999998889999987632 38889999999
Q ss_pred HHHHcCCCeEEEecCCC--hhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHH
Q 015289 196 KYRKQGFTTLKLKVGKN--LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWE 272 (409)
Q Consensus 196 ~~~~~Gf~~~KiKvG~~--~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~ 272 (409)
+++++||++||+|+|.+ +++|++++++||+. ++++.|++|+|++|+.++|++++++|+++++. |+|||++++|++
T Consensus 153 ~~~~~Gf~~~Kik~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~~~~l~~~~l~--~iEeP~~~~d~~ 230 (368)
T cd03329 153 ECKALGYRAIKLHPWGPGVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRLGRALEELGFF--WYEDPLREASIS 230 (368)
T ss_pred HHHHcCCCEEEEecCCchhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHHHHHhhhcCCC--eEeCCCCchhHH
Confidence 99999999999998743 68999999999997 79999999999999999999999999999874 999999999999
Q ss_pred HHHHhHHHhhccCCCeEEeCCCCCC-HHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 015289 273 GLGHVSHIAKDKFGVSVAADESCRS-LDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 350 (409)
Q Consensus 273 ~~~~l~~~~~~~~~ipIa~dEs~~~-~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~ 350 (409)
++++|++ ++++||++||++.+ +.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++
T Consensus 231 ~~~~l~~----~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~h~~------ 300 (368)
T cd03329 231 SYRWLAE----KLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGAMKTAHLAEAFGLDVELHGN------ 300 (368)
T ss_pred HHHHHHh----cCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEEEECh------
Confidence 9999874 68899999999999 999999999999999999999997 99999999999999999999985
Q ss_pred HHHHHHHHccCCCCceecc--ccccccccCC-----CCCCeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 351 MGFAGHLSAGLGCFKFIDL--DTPLLLSEDP-----VLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 351 ~~~~~hlaaa~~~~~~~e~--~~p~~~~~d~-----~~~~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
.++++|++++++|..+.|. +.|.....++ ..+++..+||++.+|++||||+++|+++|+
T Consensus 301 ~~a~~hlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~ 366 (368)
T cd03329 301 GAANLHVIAAIRNTRYYERGLLHPSQKYDVYAGYLSVLDDPVDSDGFVHVPKGPGLGVEIDFDYIE 366 (368)
T ss_pred HHHHHHHHhcCCCceeEEEecccccccccccccchhccCCCcCCCCeEECCCCCcCCccCCHHHHh
Confidence 4688999999999888774 3333221111 123445689999999999999999999874
No 9
>PRK14017 galactonate dehydratase; Provisional
Probab=100.00 E-value=3e-65 Score=512.38 Aligned_cols=335 Identities=20% Similarity=0.246 Sum_probs=285.4
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (409)
|||++|+++++. + ..++|||+|++|++||||+.... +.+. ....++.+.|.|+|+++.+
T Consensus 1 mkI~~i~~~~~~-----~-----------~~vlV~v~t~dG~~G~GE~~~~~--~~~~---~~~~~~~~~p~l~G~d~~~ 59 (382)
T PRK14017 1 MKITKLETFRVP-----P-----------RWLFLKIETDEGIVGWGEPVVEG--RART---VEAAVHELADYLIGKDPRR 59 (382)
T ss_pred CeEEEEEEEEEC-----C-----------CEEEEEEEECCCCeEEeccccCC--chHH---HHHHHHHHHHHhCCCCHHH
Confidence 899999998762 1 23889999999999999986321 1222 2223456889999999999
Q ss_pred HHHHHHHHHhh--cCCC-hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHHcC
Q 015289 126 LGSVFGVVAGL--LPGH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQG 201 (409)
Q Consensus 126 ~~~~~~~~~~~--~~g~-~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~G 201 (409)
++.+++.+... .++. ....|++||||||||++||.+|+|||+||||+ ++++++|.+++..+++++.+++++++++|
T Consensus 60 ~~~~~~~l~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pv~~LLGg~~r~~i~~~~~~~~~~~~~~~~~a~~~~~~G 139 (382)
T PRK14017 60 IEDHWQVMYRGGFYRGGPILMSAIAGIDQALWDIKGKALGVPVHELLGGLVRDRIRVYSWIGGDRPADVAEAARARVERG 139 (382)
T ss_pred HHHHHHHHHHhcccCCchHHhhHHHHHHHHHHHHhhhhcCCcHHHHcCCCccceeeEeEeCCCCCHHHHHHHHHHHHHcC
Confidence 99999998652 2332 23468999999999999999999999999996 67999998887778999999999999999
Q ss_pred CCeEEEecCC---------ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCH
Q 015289 202 FTTLKLKVGK---------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 271 (409)
Q Consensus 202 f~~~KiKvG~---------~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~ 271 (409)
|++||+|+|. ++++|+++++++|+. +|++.|++|+|++|+.++|+++++.|+++++. |||||++++|+
T Consensus 140 f~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~--~iEeP~~~~d~ 217 (382)
T PRK14017 140 FTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGPEIGIGVDFHGRVHKPMAKVLAKELEPYRPM--FIEEPVLPENA 217 (382)
T ss_pred CCEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHhhcccCCC--eEECCCCcCCH
Confidence 9999999863 357899999999997 79999999999999999999999999999874 99999999999
Q ss_pred HHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 015289 272 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 350 (409)
Q Consensus 272 ~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~ 350 (409)
++|++|++ ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++||+.+ +++
T Consensus 218 ~~~~~L~~----~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~-~i~ 292 (382)
T PRK14017 218 EALPEIAA----QTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPLG-PIA 292 (382)
T ss_pred HHHHHHHh----cCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCCC-HHH
Confidence 99999974 68899999999999999999999999999999999998 9999999999999999999999865 899
Q ss_pred HHHHHHHHccCCCCceeccc--ccccccc---CCCC--CCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 351 MGFAGHLSAGLGCFKFIDLD--TPLLLSE---DPVL--DGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 351 ~~~~~hlaaa~~~~~~~e~~--~p~~~~~---d~~~--~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+++++|++++++++.+.|.. ..+...+ +.+. +++.++||++++|++||||+++|+|+|
T Consensus 293 ~aa~~hl~aa~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~dG~~~vp~~PGLGv~~d~~~l 357 (382)
T PRK14017 293 LAACLQVDAVSPNAFIQEQSLGIHYNQGADLLDYVKNKEVFAYEDGFVAIPTGPGLGIEIDEAKV 357 (382)
T ss_pred HHHHHHHHHhCccceeeeecccccccchhhHHHhcccCCCCcccCCeEECCCCCcCCcCCCHHHH
Confidence 99999999999987655522 1111111 1222 467889999999999999999999876
No 10
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=100.00 E-value=1.7e-64 Score=503.37 Aligned_cols=340 Identities=26% Similarity=0.379 Sum_probs=301.9
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHcCCCCCC
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAMA 125 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~ 125 (409)
||++|+++++++|++.| .++...++.++|||+|++|++||||+.+.+. .+. ....+++ ++|.|+|+++.+
T Consensus 1 kI~~i~~~~~~~p~~~~----~~~~~~~~~~~V~v~~~~G~~G~GE~~~~~~--~~~---~~~~l~~~~~p~l~G~~~~~ 71 (357)
T cd03316 1 KITDVETFVLRVPLPEP----GGAVTWRNLVLVRVTTDDGITGWGEAYPGGR--PSA---VAAAIEDLLAPLLIGRDPLD 71 (357)
T ss_pred CeeEEEEEEEecCCccc----ccccccceEEEEEEEeCCCCEEEEeccCCCC--chH---HHHHHHHHHHHHccCCChHH
Confidence 69999999999999998 5566778999999999999999999987532 222 2334454 889999999999
Q ss_pred HHHHHHHHHhhcCCC----hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCC--CHHHHHHHHHHHH
Q 015289 126 LGSVFGVVAGLLPGH----QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIV--SPAEAAELASKYR 198 (409)
Q Consensus 126 ~~~~~~~~~~~~~g~----~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~--~~~~~~~~~~~~~ 198 (409)
++.+++.+.+...++ ....+++|||+||||++||.+|+|+|+||||. ++++|+|.+++.. +++++.+.+++++
T Consensus 72 ~~~~~~~l~~~~~~~~~~~~~~~a~~aid~Al~Dl~gk~~g~pl~~llGg~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~ 151 (357)
T cd03316 72 IERLWEKLYRRLFWRGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLLGGKVRDRVRVYASGGGYDDSPEELAEEAKRAV 151 (357)
T ss_pred HHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHhcccccCCcHhhccCCccCCceeeEEecCCCCCCHHHHHHHHHHHH
Confidence 999999987754332 23568999999999999999999999999998 7899999987665 6899999999999
Q ss_pred HcCCCeEEEecCCC------hhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCH
Q 015289 199 KQGFTTLKLKVGKN------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 271 (409)
Q Consensus 199 ~~Gf~~~KiKvG~~------~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~ 271 (409)
++||+.||+|+|.+ ++.|+++++++|+. ++++.|++|+|++|+.++|+++++.|+++++ .|+|||++++|+
T Consensus 152 ~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~ 229 (357)
T cd03316 152 AEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDL--FWFEEPVPPDDL 229 (357)
T ss_pred HcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCC--CeEcCCCCccCH
Confidence 99999999999964 68999999999997 7899999999999999999999999999986 499999999999
Q ss_pred HHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 015289 272 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 350 (409)
Q Consensus 272 ~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~ 350 (409)
+++++|++ ++++||++||++++++++.++++.+++|++|+|++++| ++++++++++|+++|+++++||+.+ +++
T Consensus 230 ~~~~~l~~----~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~~~-~i~ 304 (357)
T cd03316 230 EGLARLRQ----ATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGAGG-PIG 304 (357)
T ss_pred HHHHHHHH----hCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCCCC-HHH
Confidence 99999875 67899999999999999999999999999999999998 9999999999999999999999966 999
Q ss_pred HHHHHHHHccCCCCceecccccc-ccccCCCCCCeeeeCcEEecCCCCCcccc
Q 015289 351 MGFAGHLSAGLGCFKFIDLDTPL-LLSEDPVLDGYEVSGAVYKFTNARGHGGF 402 (409)
Q Consensus 351 ~~~~~hlaaa~~~~~~~e~~~p~-~~~~d~~~~~~~~~~G~i~~p~~PGlG~~ 402 (409)
.++++|++++++++.+.|++.+. .+.++++.+++.++||++.+|++||||++
T Consensus 305 ~aa~~hla~a~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ 357 (357)
T cd03316 305 LAASLHLAAALPNFGILEYHLDDLPLREDLFKNPPEIEDGYVTVPDRPGLGVE 357 (357)
T ss_pred HHHHHHHHHhCcChheEEeecccchhhHhhccCCCeeeCCEEECCCCCCCCCC
Confidence 99999999999999898887653 23456667788999999999999999985
No 11
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=5.2e-64 Score=498.24 Aligned_cols=330 Identities=20% Similarity=0.275 Sum_probs=282.9
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCCH
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMAL 126 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~ 126 (409)
||++|+++.+. ++.++|||+|++|++||||+.+.. +.+.. ...++.+.|+++|+++.++
T Consensus 1 ~I~~i~~~~~~----------------~~~~~V~i~~~~G~~G~GE~~~~~--~~~~~---~~~~~~l~p~l~G~d~~~~ 59 (352)
T cd03325 1 KITKIETFVVP----------------PRWLFVKIETDEGVVGWGEPTVEG--KARTV---EAAVQELEDYLIGKDPMNI 59 (352)
T ss_pred CeEEEEEEEEC----------------CCEEEEEEEECCCCEEEeccccCC--cchHH---HHHHHHHHHHhCCCCHHHH
Confidence 68899987652 246899999999999999997521 12222 2234568999999999999
Q ss_pred HHHHHHHHhh--cCCC-hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHHcCC
Q 015289 127 GSVFGVVAGL--LPGH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGF 202 (409)
Q Consensus 127 ~~~~~~~~~~--~~g~-~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf 202 (409)
+.+++.+... ..++ ....+++||||||||++||.+|+|+|+||||. ++++++|.+++..+++++.+++++++++||
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~a~aaid~Al~Dl~gk~~g~pv~~LLGg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gf 139 (352)
T cd03325 60 EHHWQVMYRGGFYRGGPVLMSAISGIDQALWDIKGKVLGVPVHQLLGGQVRDRVRVYSWIGGDRPSDVAEAARARREAGF 139 (352)
T ss_pred HHHHHHHHHhcCcCCcchhhhHHHHHHHHHHHHhhhhcCCcHHHHcCCCccceeEEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 9999988543 2332 23468999999999999999999999999995 678999988877889888899999999999
Q ss_pred CeEEEecCC---------ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHH
Q 015289 203 TTLKLKVGK---------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWE 272 (409)
Q Consensus 203 ~~~KiKvG~---------~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~ 272 (409)
++||+|+|. ++++|+++++++|+. +|++.||+|+|++|+.++|+++++.|+++++. |||||++++|++
T Consensus 140 ~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~--~iEeP~~~~d~~ 217 (352)
T cd03325 140 TAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFHGRVSKPMAKDLAKELEPYRLL--FIEEPVLPENVE 217 (352)
T ss_pred CEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHhccccCCc--EEECCCCccCHH
Confidence 999999983 467899999999997 79999999999999999999999999999874 999999999999
Q ss_pred HHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHH
Q 015289 273 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAM 351 (409)
Q Consensus 273 ~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~ 351 (409)
++++|++ ++++||++||++++++++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +|+++.
T Consensus 218 ~~~~L~~----~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~~-~s~i~~ 292 (352)
T cd03325 218 ALAEIAA----RTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHCP-LGPIAL 292 (352)
T ss_pred HHHHHHH----hCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccCC-CChHHH
Confidence 9999975 68999999999999999999999999999999999997 99999999999999999999997 899999
Q ss_pred HHHHHHHccCCCCceeccc--ccccccc----CCCC-CCeeeeCcEEecCCCCCcccccC
Q 015289 352 GFAGHLSAGLGCFKFIDLD--TPLLLSE----DPVL-DGYEVSGAVYKFTNARGHGGFLH 404 (409)
Q Consensus 352 ~~~~hlaaa~~~~~~~e~~--~p~~~~~----d~~~-~~~~~~~G~i~~p~~PGlG~~~d 404 (409)
++++|++++++++.+.|+. .++...+ +++. ++++++||++.+|++||||+++|
T Consensus 293 ~a~~hlaa~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~G~l~vp~~pGLGi~~d 352 (352)
T cd03325 293 AASLHVDASTPNFLIQEQSLGIHYNEGDDLLDYLVDPEVFDMENGYVKLPTGPGLGIEID 352 (352)
T ss_pred HHHHHHHHhcccHHhhhcccccCcccchhhhhhhccCCCCeeeCCEEECCCCCccCeeeC
Confidence 9999999999987665432 2222111 1333 57889999999999999999987
No 12
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=9.6e-64 Score=499.70 Aligned_cols=338 Identities=20% Similarity=0.264 Sum_probs=284.1
Q ss_pred EEEEEEEecCccceeeccceeeeeeEEEEEEEECC---C--ceEEEEeccCCccCcccHHHHHHHH-HHHHHHHcCCCCC
Q 015289 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSN---G--CVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPAM 124 (409)
Q Consensus 51 i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~---G--~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~~ 124 (409)
++++.+++|+++||.++.++++.++.++|||+||+ | ++||||+.. ++.... ..+ +.+.|+|+|++|.
T Consensus 3 ~~~~~~~~Pl~~p~~~a~~~~~~~~~~lV~v~td~~~~G~~~~G~Ge~~~-----~~~~~~--~~i~~~~~p~LiG~dp~ 75 (385)
T cd03326 3 VAIREKAIPLSSPIANAYVDFSGLTTSLVAVVTDVVRDGRPVVGYGFDSI-----GRYAQG--GLLRERFIPRLLAAAPD 75 (385)
T ss_pred eeeEEEecCCCCCccCceeeeeccEEEEEEEEeccccCCCceeEEEeccC-----CchhHH--HHHHHHHHHHhcCCChH
Confidence 56778889999999999999999999999999999 9 999999862 112111 113 3478999999998
Q ss_pred ----------CHHHHHHHHHhhc--CCC-hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC------CCeeeeeeeec--
Q 015289 125 ----------ALGSVFGVVAGLL--PGH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV------SNTITTDITIP-- 183 (409)
Q Consensus 125 ----------~~~~~~~~~~~~~--~g~-~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~------~~~i~~~~~i~-- 183 (409)
+++.+|+.|+... .++ ....++|||||||||++||.+|+|||+||||. +++||+|.+.+
T Consensus 76 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~~~~~~~~~v~~y~~~~~~ 155 (385)
T cd03326 76 SLLDDAGGNLDPARAWAAMMRNEKPGGHGERAVAVGALDMAVWDAVAKIAGLPLYRLLARRYGRGQADPRVPVYAAGGYY 155 (385)
T ss_pred HhhhcccccCCHHHHHHHHHhcCccCCCCHHHHHHHHHHHHHHHHhHHHcCCcHHHHcCCcccCCCCCCeEEEEEecCCC
Confidence 4499999986631 222 22458999999999999999999999999985 36899998754
Q ss_pred --CCCHHHHHHHHHHHHHcCCCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCC
Q 015289 184 --IVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTP 259 (409)
Q Consensus 184 --~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~ 259 (409)
..+++++.+++++++++||+++|+|+|. +++.|+++++++|+. +|++.|++|+|++||.++|+++++.|+++++.
T Consensus 156 ~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~- 234 (385)
T cd03326 156 YPGDDLGRLRDEMRRYLDRGYTVVKIKIGGAPLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAYAKALAPYGLR- 234 (385)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhCcCCC-
Confidence 3467888899999999999999999984 778999999999997 79999999999999999999999999999874
Q ss_pred ceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCC----CEEEeCCCCCc-HHHHHHHHHHHHH
Q 015289 260 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA----DVINIKLAKVG-VLGALEIIEVVRA 334 (409)
Q Consensus 260 ~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~----div~~k~~~~G-i~~~~~i~~~A~~ 334 (409)
|||||++++|++++++|++ ++++||++||+++++++++++++.+++ |++|+|++|+| ++++++++++|++
T Consensus 235 -~iEeP~~~~d~~~~~~L~~----~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~~~kia~lA~a 309 (385)
T cd03326 235 -WYEEPGDPLDYALQAELAD----HYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPEYLRMLDVLEA 309 (385)
T ss_pred -EEECCCCccCHHHHHHHHh----hCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCHHHHHHHHHHHHH
Confidence 9999999999999999974 688999999999999999999999988 99999999997 9999999999999
Q ss_pred cCCc---EEEccCCchHHHHHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 335 SGLN---LMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 335 ~gi~---~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+|++ +++|+ +..+++|++++.++ .+++....+.-..+.+.++++++||++.+|++||||+++|++.|
T Consensus 310 ~gi~~~~~~pH~------~~~a~lhl~aa~~~-~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGield~~~~ 379 (385)
T cd03326 310 HGWSRRRFFPHG------GHLMSLHIAAGLGL-GGNESYPDVFQPFGGFADGCKVENGYVRLPDAPGIGFEGKAELA 379 (385)
T ss_pred cCCCCceeecch------HHHHHHHHHhcCCC-ceeEEeccccchhhhcCCCCceeCCEEECCCCCCCCcccCHHHH
Confidence 9998 67765 35688999999885 23332111110112334667889999999999999999999875
No 13
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=100.00 E-value=6.7e-64 Score=498.84 Aligned_cols=331 Identities=18% Similarity=0.203 Sum_probs=283.1
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHH-HHHHHHcCCCCCC
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESPAMA 125 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~~~~ 125 (409)
||++|+++.. . | + ++.++|||+|++|++||||+.+.. +.+. ....++ .+.|.|+|+++.+
T Consensus 1 kI~~ie~~~~-~----~-----~----~~~vlV~v~td~G~~G~GE~~~~~--~~~~---~~~~i~~~l~p~l~G~d~~~ 61 (361)
T cd03322 1 KITAIEVIVT-C----P-----G----RNFVTLKITTDQGVTGLGDATLNG--RELA---VKAYLREHLKPLLIGRDANR 61 (361)
T ss_pred CeEEEEEEEE-C----C-----C----CCEEEEEEEeCCCCeEEEecccCC--CHHH---HHHHHHHHHHHHcCCCChhH
Confidence 7999999654 2 2 1 256899999999999999985311 1122 223344 4789999999999
Q ss_pred HHHHHHHHHhh--cC-CChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHHcC
Q 015289 126 LGSVFGVVAGL--LP-GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQG 201 (409)
Q Consensus 126 ~~~~~~~~~~~--~~-g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~G 201 (409)
++.+++.+... ++ +.....+++||||||||++||.+|+|||+||||. ++++|+|.+.+..+++++.+++++++++|
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pl~~LLGg~~r~~v~~ya~~~~~~~~~~~~~a~~~~~~G 141 (361)
T cd03322 62 IEDIWQYLYRGAYWRRGPVTMNAIAAVDMALWDIKGKAAGMPLYQLLGGKSRDGIMVYSHASGRDIPELLEAVERHLAQG 141 (361)
T ss_pred HHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHhHhhcCCcHHHHcCCCccCeeeEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 99999998653 12 2223458999999999999999999999999996 67899997766667888889999999999
Q ss_pred CCeEEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHH
Q 015289 202 FTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 280 (409)
Q Consensus 202 f~~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~ 280 (409)
|++||+|+ +++++++|+. ++++.|++|+|++||+++|+++++.|+++++. |||||++++|++++++|++
T Consensus 142 f~~~KiKv-------~~~v~avre~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~--~iEeP~~~~d~~~~~~L~~- 211 (361)
T cd03322 142 YRAIRVQL-------PKLFEAVREKFGFEFHLLHDVHHRLTPNQAARFGKDVEPYRLF--WMEDPTPAENQEAFRLIRQ- 211 (361)
T ss_pred CCeEeeCH-------HHHHHHHHhccCCCceEEEECCCCCCHHHHHHHHHHhhhcCCC--EEECCCCcccHHHHHHHHh-
Confidence 99999998 8899999997 78999999999999999999999999999874 9999999999999999974
Q ss_pred hhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHH
Q 015289 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLS 358 (409)
Q Consensus 281 ~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~-es~i~~~~~~hla 358 (409)
++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. +++++.++++|++
T Consensus 212 ---~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~s~i~~aa~~~la 288 (361)
T cd03322 212 ---HTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPTDLSPVGMAAALHLD 288 (361)
T ss_pred ---cCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCCCcchHHHHHHHHHH
Confidence 68899999999999999999999999999999999998 999999999999999999999987 5999999999999
Q ss_pred ccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 359 AGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 359 aa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
++++++.+.++.....+..+++.+++.++||++.+|++||||+++|+|+++
T Consensus 289 a~~~~~~~~e~~~~~~~~~~~~~~~~~~~dG~i~~p~~PGlGi~~d~~~l~ 339 (361)
T cd03322 289 LWVPNFGIQEYMRHAEETLEVFPHSVRFEDGYLHPGEEPGLGVEIDEKAAA 339 (361)
T ss_pred hhcCcceEEEeccccchHHHhcCCCCeecCCeEeCCCCCccCceECHHHHh
Confidence 999887666653211223466777889999999999999999999998763
No 14
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=4.9e-63 Score=489.24 Aligned_cols=319 Identities=19% Similarity=0.271 Sum_probs=273.2
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHH-HHHHHHHcCCCCCC
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPAMA 125 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~~~ 125 (409)
||++|+++. ..++|||+||+|++||||+... . .. ...+ +.+.|.|+|++|.+
T Consensus 1 kI~~i~~~~-------------------~~v~V~i~td~Gi~G~GE~~~~----~-~~---~~~i~~~l~p~liG~dp~~ 53 (341)
T cd03327 1 KIKSVRTRV-------------------GWLFVEIETDDGTVGYANTTGG----P-VA---CWIVDQHLARFLIGKDPSD 53 (341)
T ss_pred CeEEEEEEE-------------------EEEEEEEEECCCCeEEecCCCc----h-HH---HHHHHHHHHHHhCCCCchH
Confidence 789999853 2589999999999999998531 1 11 1223 34789999999999
Q ss_pred HHHHHHHHHhhc---C-CChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeee-cCCCHHHHHHHHHHHHH
Q 015289 126 LGSVFGVVAGLL---P-GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITI-PIVSPAEAAELASKYRK 199 (409)
Q Consensus 126 ~~~~~~~~~~~~---~-g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i-~~~~~~~~~~~~~~~~~ 199 (409)
++.+|+.+++.. . +.....++|||||||||++||.+|+|||+||||+ +++||+|++. ...+++++.++++++++
T Consensus 54 ~~~~~~~l~~~~~~~~~~~~~~~a~said~AlwDl~gK~~g~Pv~~LLGG~~r~~i~~y~~~~~~~~~~~~~~~a~~~~~ 133 (341)
T cd03327 54 IEKLWDQMYRATLAYGRKGIAMAAISAVDLALWDLLGKIRGEPVYKLLGGRTRDKIPAYASGLYPTDLDELPDEAKEYLK 133 (341)
T ss_pred HHHHHHHHHhhccccCCccHHHhHHHHHHHHHHHhcccccCCCHHHHcCCCcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 999999996632 1 1222358999999999999999999999999996 5689999875 35688889999999999
Q ss_pred cCCCeEEEecCC-------ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCH
Q 015289 200 QGFTTLKLKVGK-------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 271 (409)
Q Consensus 200 ~Gf~~~KiKvG~-------~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~ 271 (409)
+||++||+|+|. ++++|+++++++|+. +|++.|++|+|++|++++|++++++|+++++ .|||||++++|+
T Consensus 134 ~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~avr~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~d~ 211 (341)
T cd03327 134 EGYRGMKMRFGYGPSDGHAGLRKNVELVRAIREAVGYDVDLMLDCYMSWNLNYAIKMARALEKYEL--RWIEEPLIPDDI 211 (341)
T ss_pred cCCCEEEECCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhhcCC--ccccCCCCccCH
Confidence 999999999973 357999999999997 7999999999999999999999999999987 499999999999
Q ss_pred HHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 015289 272 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 350 (409)
Q Consensus 272 ~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~ 350 (409)
++|++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+.
T Consensus 212 ~~~~~l~~----~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~~------ 281 (341)
T cd03327 212 EGYAELKK----ATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHAS------ 281 (341)
T ss_pred HHHHHHHh----cCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccccH------
Confidence 99999974 68999999999999999999999999999999999997 99999999999999999999973
Q ss_pred HHHHHHHHccCCCCceecccc--ccc----cccCCCCCCeeeeCcEEecCCCCCcccccC
Q 015289 351 MGFAGHLSAGLGCFKFIDLDT--PLL----LSEDPVLDGYEVSGAVYKFTNARGHGGFLH 404 (409)
Q Consensus 351 ~~~~~hlaaa~~~~~~~e~~~--p~~----~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d 404 (409)
.++++|++++++|+.+.|+.. +.. +.++++.+++.++||++++|++||||+++|
T Consensus 282 ~~a~~hlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~PGLGve~d 341 (341)
T cd03327 282 QIYNYHFIMSEPNSPFAEYLPNSPDEVGNPLFYYIFLNEPVPVNGYFDLSDKPGFGLELN 341 (341)
T ss_pred HHHHHHHHHhCcCceeEEecccccccccchhHHHhccCCCcccCCeEECCCCCccCeecC
Confidence 458899999999987777532 111 124566677788999999999999999987
No 15
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=1.8e-62 Score=494.14 Aligned_cols=342 Identities=20% Similarity=0.243 Sum_probs=276.7
Q ss_pred eeEeEEEEEEEEecCccceeeccc--eeeeeeEEEEEEEECC-CceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATS--RLDQVENVAIRIELSN-GCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~--~~~~~~~~iVrl~td~-G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~ 122 (409)
+||++|+++.+++|++.|+..+.+ +....+.++|||+||+ |++||||+.+.. +........++.++|+++|++
T Consensus 1 ~kI~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~V~i~td~~G~~G~Ge~~~~~----~~~~~~~~~~~~lap~liG~d 76 (415)
T cd03324 1 IKITALEVRDVRFPTSLELDGSDAMNPDPDYSAAYVVLRTDAAGLKGHGLTFTIG----RGNEIVCAAIEALAHLVVGRD 76 (415)
T ss_pred CeEEEEEEEEEEeecCccCCCcccccCCCCceEEEEEEEecCCCCEEEEEeccCC----CchHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999855433 3344578999999999 999999986421 121222222355889999999
Q ss_pred CCCHHHHHHHHHhhcC--------C---ChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCC------------------
Q 015289 123 AMALGSVFGVVAGLLP--------G---HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS------------------ 173 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~--------g---~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~------------------ 173 (409)
+.+++.+++.+.+.+. + .....++|||||||||++||.+|+|||+||||..
T Consensus 77 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saiD~AlwDl~gK~~g~Pv~~LLGg~~~~~~~~~~~~~~~~~~~~ 156 (415)
T cd03324 77 LESIVADMGKFWRRLTSDSQLRWIGPEKGVIHLATAAVVNAVWDLWAKAEGKPLWKLLVDMTPEELVSCIDFRYITDALT 156 (415)
T ss_pred HHHHHHHHHHHHHHhhccccceecCCcccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcCCCHHHhhhcccceeeccccC
Confidence 9988554444433221 1 1113589999999999999999999999999942
Q ss_pred ------------------------Ceeeeeeee-c--CCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhh
Q 015289 174 ------------------------NTITTDITI-P--IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 226 (409)
Q Consensus 174 ------------------------~~i~~~~~i-~--~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~ 226 (409)
+++|+|.+. + ..+++++.+++++++++||++||+|+|.+++.|+++++++|+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~d~~~v~avRe~ 236 (415)
T cd03324 157 PEEALEILRRGQPGKAAREADLLAEGYPAYTTSAGWLGYSDEKLRRLCKEALAQGFTHFKLKVGADLEDDIRRCRLAREV 236 (415)
T ss_pred HHHHHHHhhhcccchhhhhhhhhccCCceeecCCcccCCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 467888542 2 3477889999999999999999999998899999999999997
Q ss_pred -CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccC---CCeEEeCCCCCCHHHHH
Q 015289 227 -HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF---GVSVAADESCRSLDDVK 302 (409)
Q Consensus 227 -~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~---~ipIa~dEs~~~~~~~~ 302 (409)
+|++.|++|+|++|++++|++++++|+++++. |||||++++|+++|++|++ ++ ++||++||++++.++++
T Consensus 237 vG~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~--~iEEP~~~~d~~~~~~L~~----~~~~~~iPIa~gEs~~~~~~~~ 310 (415)
T cd03324 237 IGPDNKLMIDANQRWDVPEAIEWVKQLAEFKPW--WIEEPTSPDDILGHAAIRK----ALAPLPIGVATGEHCQNRVVFK 310 (415)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHhhccCCC--EEECCCCCCcHHHHHHHHH----hcccCCCceecCCccCCHHHHH
Confidence 79999999999999999999999999999874 9999999999999999975 44 69999999999999999
Q ss_pred HHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHcc---------CCCCceeccccc
Q 015289 303 KIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG---------LGCFKFIDLDTP 372 (409)
Q Consensus 303 ~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa---------~~~~~~~e~~~p 372 (409)
++++.+++|++|+|++++| ++++++++++|+++|+++++|+ ++++.++++|.++. .++. ++|+..
T Consensus 311 ~ll~~~a~dil~~d~~~~GGit~~~kia~lA~a~gi~~~pH~---s~~~~~a~~~~~~~~~~~~~~~~~~~~-~~e~~~- 385 (415)
T cd03324 311 QLLQAGAIDVVQIDSCRLGGVNENLAVLLMAAKFGVPVCPHA---GGVGLCELVQHLSMIDYICVSGSKEGR-VIEYVD- 385 (415)
T ss_pred HHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEcC---CHHHHHHHHHHhhcccccccCCccccc-hhhhHH-
Confidence 9999999999999999998 9999999999999999999996 56666666654332 1121 233211
Q ss_pred cccccCCCCCCeeeeCcEEecCCCCCcccccC
Q 015289 373 LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLH 404 (409)
Q Consensus 373 ~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d 404 (409)
+..+++.++++++||++.+|++||||+++.
T Consensus 386 --~~~~~~~~~~~~~dG~l~lp~~PGLGve~~ 415 (415)
T cd03324 386 --HLHEHFVYPVVIQNGAYMPPTDPGYSIEMK 415 (415)
T ss_pred --HHHhhccCCCeeeCCEEECCCCCccCeeeC
Confidence 123455677899999999999999999873
No 16
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=100.00 E-value=4.7e-62 Score=493.82 Aligned_cols=348 Identities=18% Similarity=0.231 Sum_probs=286.0
Q ss_pred eeeEeEEEEEEEEecCccceeecccee-eeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCC
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRL-DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~-~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (409)
+.-||++++.++..- ..++-...|.. ...+.++|||+||+|++||||+.. .+... ..++.++|.|+|+++
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iV~v~Td~Gi~G~GEa~~-----~~~~~---~~l~~lap~LiG~dp 73 (441)
T TIGR03247 3 TPVVTEMRVIPVAGH-DSMLLNLSGAHAPFFTRNIVILTDSSGNTGVGEVPG-----GEKIR---ATLEDARPLVVGKPL 73 (441)
T ss_pred CCEEeEEEEEeeccc-cchhccccccCCCcceEEEEEEEECCCCeEEEeCCC-----cHHHH---HHHHHHHHHhcCCCH
Confidence 345788888887432 12232322321 257899999999999999999853 22222 223568899999999
Q ss_pred CCHHHHHHHHHhhcC-------CCh------hhHHHHHHHHHHHHHHHhhcCCchHHHhC-CC-CCeeeeeee---ec--
Q 015289 124 MALGSVFGVVAGLLP-------GHQ------FASVRAAVEMALIDAVAKSVSMPLWRLFG-GV-SNTITTDIT---IP-- 183 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~-------g~~------~~~a~said~AlwDl~gk~~g~Pl~~LLG-g~-~~~i~~~~~---i~-- 183 (409)
.+++.+|+.+..... ++. ...|+|||||||||++||.+|+|||+||| |. +++||+|.+ ++
T Consensus 74 ~~~e~i~~~m~~~~~~~~~~~~g~~~~~~~~~~~A~aAIDiALWDl~gK~~g~Pl~~LLGgg~~r~~vp~y~~~~~ig~~ 153 (441)
T TIGR03247 74 GEYQNVLNDVRATFADRDAGGRGLQTFDLRTTIHAVTAIESALLDLLGQHLGVPVAALLGEGQQRDEVEMLGYLFFIGDR 153 (441)
T ss_pred HHHHHHHHHHHHHhhcccccccCcccccchhHHHHHHHHHHHHHHHhhhHcCCCHHHHhCCCCccceEEEeeeeeecccc
Confidence 999999999866431 211 24689999999999999999999999999 63 578998854 11
Q ss_pred ------------------------CCCHHHHHHHHHHHHH-cCCCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEEEeCC
Q 015289 184 ------------------------IVSPAEAAELASKYRK-QGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDAN 237 (409)
Q Consensus 184 ------------------------~~~~~~~~~~~~~~~~-~Gf~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~vDaN 237 (409)
..+++++.++++++++ +||++||+|+|. +.++|+++++++|++++++.|++|+|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~a~KiKvG~~~~~~Di~~v~avRea~~d~~L~vDAN 233 (441)
T TIGR03247 154 KRTSLPYRSGPQDDDDWFRLRHEEALTPEAVVRLAEAAYDRYGFRDFKLKGGVLRGEEEIEAVTALAKRFPQARITLDPN 233 (441)
T ss_pred ccccccccccccccccccccccccCCCHHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHHHHHHhCCCCeEEEECC
Confidence 1367888888888776 599999999995 56899999999999888999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCceeecCCCCCC----HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEE
Q 015289 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD----WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 313 (409)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d----~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div 313 (409)
++|+.++|++++++|+++ + .|||||++++| ++++++|++ ++++||++||+++++++++++++.+++|++
T Consensus 234 ~~wt~~~Ai~~~~~Le~~-~--~~iEePv~~~d~~~~~~~la~Lr~----~~~iPIa~dEs~~~~~~~~~li~~~avdi~ 306 (441)
T TIGR03247 234 GAWSLDEAIALCKDLKGV-L--AYAEDPCGAEQGYSGREVMAEFRR----ATGLPTATNMIATDWRQMGHALQLQAVDIP 306 (441)
T ss_pred CCCCHHHHHHHHHHhhhh-h--ceEeCCCCcccccchHHHHHHHHH----hCCCCEEcCCccCCHHHHHHHHHhCCCCEE
Confidence 999999999999999998 6 49999999998 899999874 789999999999999999999999999999
Q ss_pred EeCCCCCcHHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceeccccccccc--cCCCCCCeeeeCcEE
Q 015289 314 NIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLS--EDPVLDGYEVSGAVY 391 (409)
Q Consensus 314 ~~k~~~~Gi~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~--~d~~~~~~~~~~G~i 391 (409)
|+|+.++|++++++++++|+++|+++++|++.+++++.++++|+++++++.. .+++.++.+. ++++.++++++||++
T Consensus 307 ~~d~~~gGIt~~~kIa~lA~a~Gi~v~~h~~~~~~i~~aa~~hlaaa~p~~~-~~~d~~~~~~~~~~l~~~p~~~~dG~i 385 (441)
T TIGR03247 307 LADPHFWTMQGSVRVAQMCHDWGLTWGSHSNNHFDISLAMFTHVAAAAPGKI-TAIDTHWIWQDGQRLTKEPLEIKGGKI 385 (441)
T ss_pred eccCCcchHHHHHHHHHHHHHcCCEEEEeCCccCHHHHHHHHHHHHhCCCCc-cccCcchhhhcccccccCCceeECCEE
Confidence 9999766799999999999999999999998788999999999999988632 3445443322 356677788999999
Q ss_pred ecCCCCCcccccCCCCcC
Q 015289 392 KFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 392 ~~p~~PGlG~~~d~d~~~ 409 (409)
.+|++||||+++|+++|+
T Consensus 386 ~vp~~PGLGve~d~~~l~ 403 (441)
T TIGR03247 386 QVPDKPGLGVEIDMDAVD 403 (441)
T ss_pred ecCCCCCCCceeCHHHHH
Confidence 999999999999998763
No 17
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=100.00 E-value=5.4e-62 Score=487.65 Aligned_cols=349 Identities=28% Similarity=0.398 Sum_probs=295.7
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (409)
|+|.+|+.+++.+|+..||.++.++.+.+..++|+|+|++|++||||+.+...... .... .. ..+.+.++|+++.+
T Consensus 1 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~v~i~~d~G~~G~GE~~~~~~~~~-~~~~-~~--~~~~~~l~g~d~~~ 76 (372)
T COG4948 1 MKIMKITVIPVAVPLSPPFVTSGGTVRFFTRVIVEITTDDGIVGWGEAVPGGRARY-GEEA-EA--VLLAPLLIGRDPFD 76 (372)
T ss_pred CCceeEEEEEeeeecCCcccccccccccceEEEEEEEECCCceeeccccCcccccc-hhhh-hH--HHHHHHhcCCCHHH
Confidence 67888999999999999999998888889999999999999999999997532211 1111 11 14678999999999
Q ss_pred HHHHHHHHHhhcC---CChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCC-CeeeeeeeecC--CCHHHHHHHHHHHHH
Q 015289 126 LGSVFGVVAGLLP---GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDITIPI--VSPAEAAELASKYRK 199 (409)
Q Consensus 126 ~~~~~~~~~~~~~---g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~-~~i~~~~~i~~--~~~~~~~~~~~~~~~ 199 (409)
++.+|+.++.... ++....+++|||+||||+.||.+|+|||+||||.. +.+++|.+... .+++...+.++.+.+
T Consensus 77 i~~~~~~~~~~~~~~~~~~~~~a~sAvd~ALwDl~gK~~g~Pv~~LLGg~~r~~v~~y~~~~~~~~~~e~~~~~~~~~~~ 156 (372)
T COG4948 77 IERIWQKLYRAGFARRGGITMAAISAVDIALWDLAGKALGVPVYKLLGGKVRDEVRAYASGGGGEDPEEMAAEAARALVE 156 (372)
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCCceeeeEEEEEecCCCCCCHHHHHHHHHHHHh
Confidence 9999998876432 22234699999999999999999999999999986 48888888765 255556666677777
Q ss_pred cCCCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHh
Q 015289 200 QGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 277 (409)
Q Consensus 200 ~Gf~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l 277 (409)
+||+.+|+|+|. +.+.|+++++++|++ ++++.|++|+|++||+++|++++++|+++++ .|||||++++|++++++|
T Consensus 157 ~G~~~~Klk~g~~~~~~d~~~v~avRe~~g~~~~l~iDan~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~l 234 (372)
T COG4948 157 LGFKALKLKVGVGDGDEDLERVRALREAVGDDVRLMVDANGGWTLEEAIRLARALEEYGL--EWIEEPLPPDDLEGLREL 234 (372)
T ss_pred cCCceEEecCCCCchHHHHHHHHHHHHHhCCCceEEEeCCCCcCHHHHHHHHHHhcccCc--ceEECCCCccCHHHHHHH
Confidence 999999999994 456999999999998 5699999999999999999999999999986 599999999999999999
Q ss_pred HHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHH
Q 015289 278 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356 (409)
Q Consensus 278 ~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~h 356 (409)
++ .+.+|||+||++++..+++++++.+++|++|+|++++| ++++++++++|+.+++.+.+|. +++++.++++|
T Consensus 235 ~~----~~~~PIa~gEs~~~~~~~~~l~~~~a~div~~d~~~~GGite~~kia~~A~~~~~~v~~h~--~~~i~~aa~~h 308 (372)
T COG4948 235 RA----ATSTPIAAGESVYTRWDFRRLLEAGAVDIVQPDLARVGGITEALKIAALAEGFGVMVGPHV--EGPISLAAALH 308 (372)
T ss_pred Hh----cCCCCEecCcccccHHHHHHHHHcCCCCeecCCccccCCHHHHHHHHHHHHHhCCceeccC--chHHHHHHHHH
Confidence 74 45699999999999999999999999999999999998 9999999999998888777766 59999999999
Q ss_pred HHccCCCCceecccccccccc-----CCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 357 LSAGLGCFKFIDLDTPLLLSE-----DPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 357 laaa~~~~~~~e~~~p~~~~~-----d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
++++.++ +.++++++.+.. +++.+++..+||++.+|++||||+++|++.+
T Consensus 309 la~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~PGlGv~~~~~~~ 363 (372)
T COG4948 309 LAAALPN--FGDLEGPLALADDDWYDDLVEEPLIVRGGLVHVPDGPGLGVELDEDAL 363 (372)
T ss_pred Hhhccch--hhhccccccccccchhhhhccCCccccCCeEeCCCCCCCCccccHHHH
Confidence 9998865 344555544433 3577777889999999999999999998864
No 18
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=100.00 E-value=1.1e-60 Score=469.13 Aligned_cols=317 Identities=23% Similarity=0.317 Sum_probs=279.4
Q ss_pred EEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHcCCCCCCHHHHH
Q 015289 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESPAMALGSVF 130 (409)
Q Consensus 54 ~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~~~~ 130 (409)
|++++|++.||.++.+++++++.++|||+|++|++||||+.+. |.+++++...+...+++ +.|.++| ++.+++.++
T Consensus 1 ~~~~lp~~~p~~~a~~~~~~~~~~lV~v~~~~G~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~g-~~~~~~~~~ 79 (324)
T TIGR01928 1 YHVSEPFKSPFKTSKGTLNHRDCLIIELIDDKGNAGFGEVVAFQTPWYTHETIATVKHIIEDFFEPNINK-EFEHPSEAL 79 (324)
T ss_pred CeecccCcCCEEcCCeeEecCcEEEEEEEECCCCeEEEeccccCCCCcCcccHHHHHHHHHHHHHHHhcC-CCCCHHHHH
Confidence 4678999999999999999999999999999999999999854 56777776655555555 5789999 999999999
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC
Q 015289 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG 210 (409)
Q Consensus 131 ~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG 210 (409)
+.+.. ..++ +.+++||||||||++||..|+|+|+||||.++++|+|.+++..+++++.+++++++++||++||+|++
T Consensus 80 ~~~~~-~~~~--~~a~said~AlwDl~gk~~g~Pl~~llGg~~~~i~~y~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~ 156 (324)
T TIGR01928 80 ELVRS-LKGT--PMAKAGLEMALWDMYHKLPSFSLAYGQGKLRDKAPAGAVSGLANDEQMLKQIESLKATGYKRIKLKIT 156 (324)
T ss_pred HHHHH-ccCC--cHHHHHHHHHHHHHHHhhhCCcHHHHhCCCCCeEEEeEEcCCCCHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 88865 3443 35799999999999999999999999999888999999998889999999999999999999999996
Q ss_pred CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEE
Q 015289 211 KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA 290 (409)
Q Consensus 211 ~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa 290 (409)
. +.|+++++++|+.+|++.|++|+|++|+.+++ ++++.|+++++ .|||||++++|++++++|++ ++++||+
T Consensus 157 ~--~~d~~~v~~vr~~~~~~~l~vDaN~~~~~~~a-~~~~~l~~~~~--~~iEeP~~~~~~~~~~~l~~----~~~~pia 227 (324)
T TIGR01928 157 P--QIMHQLVKLRRLRFPQIPLVIDANESYDLQDF-PRLKELDRYQL--LYIEEPFKIDDLSMLDELAK----GTITPIC 227 (324)
T ss_pred C--chhHHHHHHHHHhCCCCcEEEECCCCCCHHHH-HHHHHHhhCCC--cEEECCCChhHHHHHHHHHh----hcCCCEe
Confidence 4 67999999999988899999999999999986 67899999987 49999999999999999975 6889999
Q ss_pred eCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecc
Q 015289 291 ADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDL 369 (409)
Q Consensus 291 ~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~ 369 (409)
+||++++.++++++++.+++|++|+|++++| ++++++++++|+++|+++++||+++|+|+.++++|+|++.++....|.
T Consensus 228 ~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es~i~~aa~~hla~~~~~~~~~~~ 307 (324)
T TIGR01928 228 LDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGMLETGISRAFNVALASLGGNDYPGDV 307 (324)
T ss_pred eCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceEcccHHHHHHHHHHhCCCCCCCCCC
Confidence 9999999999999999999999999999998 999999999999999999999999999999999999988765433344
Q ss_pred c-cccccccCCCCCC
Q 015289 370 D-TPLLLSEDPVLDG 383 (409)
Q Consensus 370 ~-~p~~~~~d~~~~~ 383 (409)
. +..++..|+..++
T Consensus 308 ~~~~~~~~~d~~~~~ 322 (324)
T TIGR01928 308 SPSGYYFDQDIVAPS 322 (324)
T ss_pred CCccccccccccCCC
Confidence 3 3344556665554
No 19
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=100.00 E-value=5.2e-60 Score=473.40 Aligned_cols=310 Identities=17% Similarity=0.241 Sum_probs=255.6
Q ss_pred eeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHH-HHHHHHHcCCCCCCHHHHHHHHHhhc--CCC--hhhHHH
Q 015289 72 DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPAMALGSVFGVVAGLL--PGH--QFASVR 146 (409)
Q Consensus 72 ~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~--~g~--~~~~a~ 146 (409)
+.++.++|||+||+|++||||+.. ++.. . ..+ +.+.|.|+|+++.+++.+|+.|++.. .++ ....|+
T Consensus 54 ~~~~~vlVrI~td~G~~G~Ge~~~-----~~~~--~-~~v~~~l~p~LiG~dp~~~e~l~~~m~~~~~~~g~~g~~~~A~ 125 (394)
T PRK15440 54 NVLGTLVVEVEAENGQVGFAVSTA-----GEMG--A-FIVEKHLNRFIEGKCVSDIELIWDQMLNATLYYGRKGLVMNTI 125 (394)
T ss_pred eccceEEEEEEECCCCEEEEeCCC-----cHHH--H-HHHHHHHHHHcCCCChhhHHHHHHHHHhhccccCCccHhhhHH
Confidence 456789999999999999999643 1221 1 123 34789999999999999999997642 222 223589
Q ss_pred HHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC--C-----ChhHHHH
Q 015289 147 AAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG--K-----NLKEDIE 218 (409)
Q Consensus 147 said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG--~-----~~~~d~~ 218 (409)
||||+|||||+||.+|+|||+||||. +++||+|.+.. .++ . .+++||+++|+|++ + ++++|++
T Consensus 126 saIDiALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~--~~~----~---a~~~Gf~~~Kik~~~g~~~g~~~~~~di~ 196 (394)
T PRK15440 126 SCVDLALWDLLGKVRGLPVYKLLGGAVRDELQFYATGA--RPD----L---AKEMGFIGGKMPLHHGPADGDAGLRKNAA 196 (394)
T ss_pred HHHHHHHHHHhhhHcCCcHHHHcCCCCCCeeEEEecCC--ChH----H---HHhCCCCEEEEcCCcCcccchHHHHHHHH
Confidence 99999999999999999999999996 67999997532 222 1 23589999999984 2 4589999
Q ss_pred HHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCC
Q 015289 219 VLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS 297 (409)
Q Consensus 219 ~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~ 297 (409)
+|+++|++ ++++.||+|+|++||+++|++++++|+++++. |||||++++|+++|++|++. -.+++||+.||++++
T Consensus 197 ~v~avReavG~d~~l~vDaN~~~~~~~Ai~~~~~le~~~l~--wiEEPl~~~d~~~~~~L~~~--~~~~i~ia~gE~~~~ 272 (394)
T PRK15440 197 MVADMREKVGDDFWLMLDCWMSLDVNYATKLAHACAPYGLK--WIEECLPPDDYWGYRELKRN--APAGMMVTSGEHEAT 272 (394)
T ss_pred HHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCc--ceeCCCCcccHHHHHHHHHh--CCCCCceecCCCccC
Confidence 99999997 89999999999999999999999999999874 99999999999999999752 123489999999999
Q ss_pred HHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecccc--cc-
Q 015289 298 LDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT--PL- 373 (409)
Q Consensus 298 ~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~--p~- 373 (409)
+++++++++.+++|++|+|++++| ++++++++++|+++|+++++|+. ..+++|++++.+|+.+.|+.. |.
T Consensus 273 ~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH~~------~~~~~hl~aa~~n~~~~E~~~~~~~~ 346 (394)
T PRK15440 273 LQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPHGS------SVYSHHFVITRTNSPFSEFLMMSPDA 346 (394)
T ss_pred HHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeecccCH------HHHHHHHHhhCcCceeEEecccCccc
Confidence 999999999999999999999997 99999999999999999999862 357889999999988888521 11
Q ss_pred ----ccccCCCCCCeeeeCcEEecC--CCCCcccccCCCCc
Q 015289 374 ----LLSEDPVLDGYEVSGAVYKFT--NARGHGGFLHWDNI 408 (409)
Q Consensus 374 ----~~~~d~~~~~~~~~~G~i~~p--~~PGlG~~~d~d~~ 408 (409)
...++.+.+.+.++||++.+| ++||||+++|++++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~G~l~vp~~~~PGlGveld~~~~ 387 (394)
T PRK15440 347 DTVVPQFDPILLDEPVPVNGRIHKSVLDKPGFGVELNRDCN 387 (394)
T ss_pred cccccchhhhhcCCCeeeCCEEECCCCCCCccCcccCHHHH
Confidence 111122223467889999999 99999999999864
No 20
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=100.00 E-value=3.8e-59 Score=457.66 Aligned_cols=316 Identities=29% Similarity=0.402 Sum_probs=276.2
Q ss_pred EEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCCHHHH
Q 015289 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129 (409)
Q Consensus 50 ~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (409)
+|+++++++|++.||.++.++.+.++.++|||+ ++|.+||||+.+.+.++ |+.+.+...+..++|.++ . ..+.+.+
T Consensus 3 ~i~~~~~~lpl~~p~~~a~g~~~~~~~~lv~l~-~~G~~G~GE~~p~~~~~-~~~~~~~~~l~~~~~~l~-~-~~~~~~~ 78 (321)
T PRK15129 3 TVKVYEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYG-ESDASVMAQIMSVVPQLE-K-GLTREAL 78 (321)
T ss_pred eEEEEEEEeeccCCEEccCceEEeeeEEEEEEE-eCCeEEEEeeCCcCCCC-CCHHHHHHHHHHHHHHHh-C-CCCHHHH
Confidence 799999999999999999999999999999998 68999999999887664 777766666667888886 2 1222222
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEe
Q 015289 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLK 208 (409)
Q Consensus 130 ~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiK 208 (409)
.+ .+ ++ +.+++||||||||++||..|+|+|+||||. ++++++|.+++..+++++.+++++++++||++||+|
T Consensus 79 ~~----~~-~~--~~a~~aid~AlwDl~gk~~~~pl~~llGg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KlK 151 (321)
T PRK15129 79 QK----LL-PA--GAARNAVDCALWDLAARQQQQSLAQLIGITLPETVTTAQTVVIGTPEQMANSASALWQAGAKLLKVK 151 (321)
T ss_pred Hh----hc-cC--hHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCceeEEEEecCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 21 12 22 458999999999999999999999999996 568999999988899999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCe
Q 015289 209 VGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288 (409)
Q Consensus 209 vG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ip 288 (409)
+|. +.|+++++++|+..+++.|++|||++|+.++|+++++.++++++ .|||||++++|+++++++ ++++|
T Consensus 152 v~~--~~d~~~v~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i--~~iEqP~~~~~~~~l~~~------~~~~p 221 (321)
T PRK15129 152 LDN--HLISERMVAIRSAVPDATLIVDANESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENF------IHPLP 221 (321)
T ss_pred CCC--chHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCc--eEEECCCCCCcHHHHHHh------ccCCC
Confidence 975 46899999999987799999999999999999999999999987 499999999999888764 35799
Q ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCcee
Q 015289 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI 367 (409)
Q Consensus 289 Ia~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~ 367 (409)
|++|||++++.++.++. +++|++|+|++++| ++++++++++|+++|+++++|||+||+++.++++|+ .+++.+.
T Consensus 222 ia~dEs~~~~~d~~~~~--~~~d~v~~k~~~~GGi~~a~~i~~~a~~~gi~~~~g~~~es~i~~~a~~~l---~~~~~~~ 296 (321)
T PRK15129 222 ICADESCHTRSSLKALK--GRYEMVNIKLDKTGGLTEALALATEARAQGFALMLGCMLCTSRAISAALPL---VPQVRFA 296 (321)
T ss_pred EecCCCCCCHHHHHHHH--hhCCEEEeCchhhCCHHHHHHHHHHHHHcCCcEEEecchHHHHHHHHHHHH---hcCCcEe
Confidence 99999999999999984 78999999999998 999999999999999999999999999999999999 3667788
Q ss_pred ccccccccccCCCCCCeeeeCcEEe
Q 015289 368 DLDTPLLLSEDPVLDGYEVSGAVYK 392 (409)
Q Consensus 368 e~~~p~~~~~d~~~~~~~~~~G~i~ 392 (409)
|+++++.+.+|+. +++.+++|+++
T Consensus 297 dl~~~~~~~~d~~-~~~~~~~G~~~ 320 (321)
T PRK15129 297 DLDGPTWLAVDVE-PALQFTTGELH 320 (321)
T ss_pred cCCCchhhcccCC-CCeEEeCCEEe
Confidence 9998887878874 56889999875
No 21
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=1.5e-58 Score=453.13 Aligned_cols=310 Identities=42% Similarity=0.660 Sum_probs=280.0
Q ss_pred EEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCCHHHHH
Q 015289 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVF 130 (409)
Q Consensus 51 i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (409)
|+++++++|++.|+.++.++...++.++|||+|+ |++||||+.+.+++++++.......++.+.|.++|+++. ++.++
T Consensus 2 i~~~~~~~p~~~p~~~~~~~~~~~~~~~v~v~t~-G~~G~GE~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~-~~~~~ 79 (316)
T cd03319 2 ISLRPERLPLKRPFTIARGSRTEAENVIVEIELD-GITGYGEAAPTPRVTGETVESVLAALKSVRPALIGGDPR-LEKLL 79 (316)
T ss_pred eEEEEEEeeccccEEeeCceEEeeeEEEEEEEEC-CEEEEEeecCCCCCCCCCHHHHHHHHHHHHHHhcCCCch-HHHHH
Confidence 7889999999999999999999999999999999 999999999877666776665555566679999999999 99999
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHh-CCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEec
Q 015289 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLF-GGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV 209 (409)
Q Consensus 131 ~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LL-Gg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKv 209 (409)
+.+.+...++ +.+++||||||||++||..|+|+|+|| |+.++++++|++++..+++++.+.+++++++||+.||+|+
T Consensus 80 ~~l~~~~~~~--~~a~~aid~AlwDl~gk~~g~pv~~ll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~ 157 (316)
T cd03319 80 EALQELLPGN--GAARAAVDIALWDLEAKLLGLPLYQLWGGGAPRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKL 157 (316)
T ss_pred HHHHHhccCC--hHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 9987755432 458999999999999999999999995 5556789999888888899999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeE
Q 015289 210 GKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 289 (409)
Q Consensus 210 G~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipI 289 (409)
|.+++.|+++++++|+..+++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++ .+++||
T Consensus 158 g~~~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~L~~----~~~ipI 231 (316)
T cd03319 158 GGDLEDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGV--ELIEQPVPAGDDDGLAYLRD----KSPLPI 231 (316)
T ss_pred CCChhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCC--CEEECCCCCCCHHHHHHHHh----cCCCCE
Confidence 988899999999999973399999999999999999999999999987 49999999999999999874 688999
Q ss_pred EeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceec
Q 015289 290 AADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 368 (409)
Q Consensus 290 a~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e 368 (409)
++||++++.++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++++++++.++++|+++++ ..+.+
T Consensus 232 a~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~i~~~a~~hl~a~~--~~~~~ 309 (316)
T cd03319 232 MADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVESSLSIAAAAHLAAAK--ADFVD 309 (316)
T ss_pred EEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchhhHHHHHHHHHHHhhc--CcEEe
Confidence 99999999999999999999999999999997 9999999999999999999999999999999999999987 44555
Q ss_pred cccc
Q 015289 369 LDTP 372 (409)
Q Consensus 369 ~~~p 372 (409)
++.+
T Consensus 310 ~~~~ 313 (316)
T cd03319 310 LDGP 313 (316)
T ss_pred ccCc
Confidence 5443
No 22
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=100.00 E-value=4.3e-56 Score=425.43 Aligned_cols=256 Identities=35% Similarity=0.565 Sum_probs=243.6
Q ss_pred EEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCCHHHHH
Q 015289 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVF 130 (409)
Q Consensus 51 i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (409)
|+++++++|+++||.++.++.+.++.++|||+|++|.+||||+.
T Consensus 1 i~~~~~~lpl~~~~~~~~~~~~~~~~~~v~l~~~~G~~G~GE~~------------------------------------ 44 (265)
T cd03315 1 VEAIPVRLPLKRPLKWASGTLTTADHVLLRLHTDDGLVGWAEAT------------------------------------ 44 (265)
T ss_pred CEEEEEeecccCceEecceeEeccceEEEEEEECCCCEEEeccH------------------------------------
Confidence 57899999999999999999999999999999999999999975
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC
Q 015289 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG 210 (409)
Q Consensus 131 ~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG 210 (409)
++|||+||||+.||.+|+|+|+|+|+.++++|+|++++..+++++.+++++++++||++||+|+|
T Consensus 45 ---------------~~aid~Al~Dl~gk~~g~pv~~llG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg 109 (265)
T cd03315 45 ---------------KAAVDMALWDLWGKRLGVPVYLLLGGYRDRVRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVG 109 (265)
T ss_pred ---------------HHHHHHHHHHHHHHHcCCcHHHHcCCCCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecC
Confidence 68999999999999999999999999888999999988888999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeE
Q 015289 211 KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 289 (409)
Q Consensus 211 ~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipI 289 (409)
.++++|++++++||+. ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++ ++++||
T Consensus 110 ~~~~~d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ipi 183 (265)
T cd03315 110 RDPARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGL--DYVEQPLPADDLEGRAALAR----ATDTPI 183 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCC--CEEECCCCcccHHHHHHHHh----hCCCCE
Confidence 8888999999999998 6899999999999999999999999999987 49999999999999999875 689999
Q ss_pred EeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCC
Q 015289 290 AADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 363 (409)
Q Consensus 290 a~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~ 363 (409)
++||++.++.++.++++.+++|++|+|++++| ++++++++++|+++|+++++||+++|+++.++++|+|++++.
T Consensus 184 a~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~i~~~a~~hlaa~~~~ 258 (265)
T cd03315 184 MADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESGLGTLANAHLAAALRA 258 (265)
T ss_pred EECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCccchHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999998 999999999999999999999999999999999999998874
No 23
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=100.00 E-value=2.3e-53 Score=413.83 Aligned_cols=290 Identities=24% Similarity=0.311 Sum_probs=250.4
Q ss_pred EEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 015289 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV 133 (409)
Q Consensus 54 ~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 133 (409)
|++++|++.||+++.++.+.++.++|||+ ++|.+||||+.|.|.|++|+...+...++.+.|.+.++++.++..
T Consensus 1 ~~~~lpl~~p~~~a~g~~~~~~~~iv~l~-~~G~~G~GE~~p~~~~~~et~~~~~~~l~~l~~~l~~~~~~~~~~----- 74 (307)
T TIGR01927 1 YRYQMPFDAPVVTRHGLLARREGLIVRLT-DEGRTGWGEIAPLPGFGTETLAEALDFCRALIEEITRGDIEAIDD----- 74 (307)
T ss_pred CcEeccCCCCcCcCceeEEeeeEEEEEEE-ECCcEEEEEeecCCCCCcccHHHHHHHHHHHHHHhcccchhhccc-----
Confidence 46889999999999999999999999999 569999999999999999998888777777888888776543321
Q ss_pred HhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC-C
Q 015289 134 AGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-N 212 (409)
Q Consensus 134 ~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-~ 212 (409)
..+++++|||+||||+.||. +.|. ...+...+++..+++++..++.+ ++||++||+|+|. +
T Consensus 75 -------~~~~~~~aie~Al~Dl~~k~-~~~~--------~~~~~~~~l~~~~~~~~~~~~~~--~~Gf~~~KiKvG~~~ 136 (307)
T TIGR01927 75 -------QLPSVAFGFESALIELESGD-ELPP--------ASNYYVALLPAGDPALLLLRSAK--AEGFRTFKWKVGVGE 136 (307)
T ss_pred -------cCcHHHHHHHHHHHHHhcCC-CCCc--------ccccceeeccCCCHHHHHHHHHH--hCCCCEEEEEeCCCC
Confidence 12357999999999999997 2221 12223346667788887776665 7899999999995 7
Q ss_pred hhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh---CCCCCceeecCCCCCCHHHHHHhHHHhhccCCCe
Q 015289 213 LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE---MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288 (409)
Q Consensus 213 ~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~---~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ip 288 (409)
++.|+++|++||+. ++++.|++|+|++|+.++|++++++|++ +++ .|||||++.+ +++++|++ ++++|
T Consensus 137 ~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i--~~iEqP~~~~--~~~~~l~~----~~~~P 208 (307)
T TIGR01927 137 LAREGMLVNLLLEALPDKAELRLDANGGLSPDEAQQFLKALDPNLRGRI--AFLEEPLPDA--DEMSAFSE----ATGTA 208 (307)
T ss_pred hHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhcccccCCCc--eEEeCCCCCH--HHHHHHHH----hCCCC
Confidence 88999999999997 6789999999999999999999999997 776 5999999866 78888864 68899
Q ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCcee
Q 015289 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI 367 (409)
Q Consensus 289 Ia~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~ 367 (409)
|++||++.+.+++.++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||++++++++|+++++++....
T Consensus 209 ia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i~~aa~~hlaa~~~~~~~~ 288 (307)
T TIGR01927 209 IALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSIALGQLARLAAKLSPDPAA 288 (307)
T ss_pred EEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999998 9999999999999999999999999999999999999999888777
Q ss_pred cccccccc
Q 015289 368 DLDTPLLL 375 (409)
Q Consensus 368 e~~~p~~~ 375 (409)
.++++..+
T Consensus 289 ~~~~~~~~ 296 (307)
T TIGR01927 289 VGFTTALL 296 (307)
T ss_pred CCccHHHh
Confidence 77776544
No 24
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=1.5e-53 Score=407.25 Aligned_cols=250 Identities=32% Similarity=0.466 Sum_probs=231.0
Q ss_pred EEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 015289 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFG 131 (409)
Q Consensus 52 ~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 131 (409)
+++++++|+++||.++.+++..++.++|||+|++|.+||||+.+.+
T Consensus 2 ~~~~~~lpl~~~~~~~~~~~~~~~~~~v~l~~~~G~~G~GE~~p~~---------------------------------- 47 (263)
T cd03320 2 RLYPYSLPLSRPLGTSRGRLTRRRGLLLRLEDLTGPVGWGEIAPLP---------------------------------- 47 (263)
T ss_pred ccEEEEeecCCcccccCceEEEEeEEEEEEecCCCCeeEEeccchH----------------------------------
Confidence 5678999999999999999999999999999999999999998631
Q ss_pred HHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC
Q 015289 132 VVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG 210 (409)
Q Consensus 132 ~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG 210 (409)
+++||||||||+.||..| ||. +++||+|.+++..++ +..+.+++++++||++||+|+|
T Consensus 48 -------------a~aaid~AlwDl~gk~~g-------gg~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~Gf~~~KiKvg 106 (263)
T cd03320 48 -------------LAFGIESALANLEALLVG-------FTRPRNRIPVNALLPAGDA-AALGEAKAAYGGGYRTVKLKVG 106 (263)
T ss_pred -------------HHHHHHHHHhcccccccC-------CCCCccCcceeEEecCCCH-HHHHHHHHHHhCCCCEEEEEEC
Confidence 589999999999999999 665 678999999888777 5557788888999999999998
Q ss_pred C-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCe
Q 015289 211 K-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288 (409)
Q Consensus 211 ~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ip 288 (409)
. ++++|+++++++|+. ++++.|++|+|++|+.++|+++++.|+++++. |||||++++|++++++++ +++|
T Consensus 107 ~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i~--~iEqP~~~~d~~~~~~l~------~~~P 178 (263)
T cd03320 107 ATSFEEDLARLRALREALPADAKLRLDANGGWSLEEALAFLEALAAGRIE--YIEQPLPPDDLAELRRLA------AGVP 178 (263)
T ss_pred CCChHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhhcccCCc--eEECCCChHHHHHHHHhh------cCCC
Confidence 5 578999999999998 67999999999999999999999999999874 999999999999998873 6799
Q ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCC
Q 015289 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 364 (409)
Q Consensus 289 Ia~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~ 364 (409)
|++||++++++++.++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||+++.++++|+++++|+.
T Consensus 179 Ia~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~ig~aa~~hlaa~~~~~ 255 (263)
T cd03320 179 IALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALESSIGLGALAHLAAALPPL 255 (263)
T ss_pred eeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchhhHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999998 9999999999999999999999999999999999999999873
No 25
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=100.00 E-value=1.5e-51 Score=403.52 Aligned_cols=296 Identities=22% Similarity=0.238 Sum_probs=251.1
Q ss_pred eEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCCHHH
Q 015289 49 QRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGS 128 (409)
Q Consensus 49 ~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~ 128 (409)
++|+++++++|++.||+++.|+++.++.++|||+ ++|++||||+.|.|.|++|+..++...+.+.++.+.+.+..+..
T Consensus 2 ~~i~~~~~~lpl~~p~~~a~g~~~~~~~viV~l~-d~G~~G~GE~~p~~~~~~et~~~~~~~l~~~~~~~~~~~~~~~~- 79 (322)
T PRK05105 2 RSAQLYRYQIPMDAGVPLRKQRLKTRDGLVVQLR-EGEREGWGEIAPLPGFSQETLEEAQEALLAWLNNWLAGDCDDEL- 79 (322)
T ss_pred cceEEEEEEEecCCCceecceEEEEeeeEEEEEE-ECCcEEEEEeCCCCCCCccCHHHHHHHHHHHHHHhhcCcccccc-
Confidence 4799999999999999999999999999999997 88999999999999999999988877666644334443332211
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEe
Q 015289 129 VFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLK 208 (409)
Q Consensus 129 ~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiK 208 (409)
...+.+++++++|+||+.||..+.|++.. .+++..+++++.++++++ +||++||+|
T Consensus 80 -----------~~~~~a~~~i~~Al~dl~gk~~~~~~~~~-----------~~l~~~~~~~~~~~a~~~--~Gf~~~KvK 135 (322)
T PRK05105 80 -----------SQYPSVAFGLSCALAELAGTLPQAANYRT-----------APLCYGDPDELILKLADM--PGEKVAKVK 135 (322)
T ss_pred -----------ccCcHHHHHHHHHHHHhcCCCCCCCCcce-----------eeeecCCHHHHHHHHHHc--CCCCEEEEE
Confidence 12346789999999999999999988621 234456788888888876 899999999
Q ss_pred cC-CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHh---CCCCCceeecCCCCCCHHHHHHhHHHhhcc
Q 015289 209 VG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE---MGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284 (409)
Q Consensus 209 vG-~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~---~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~ 284 (409)
+| .++++|++++++||+..+++.|++|+|++|++++|+++++++++ +++ .|||||++. .++++++++ +
T Consensus 136 vG~~~~~~d~~~i~~vr~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i--~~iEqP~~~--~~~~~~l~~----~ 207 (322)
T PRK05105 136 VGLYEAVRDGMLVNLLLEAIPDLKLRLDANRGWTLEKAQQFAKYVPPDYRHRI--AFLEEPCKT--PDDSRAFAR----A 207 (322)
T ss_pred ECCCCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCc--cEEECCCCC--HHHHHHHHH----h
Confidence 99 57899999999999977899999999999999999999999998 776 599999964 556777764 6
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCC
Q 015289 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 363 (409)
Q Consensus 285 ~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~ 363 (409)
+++||++|||+.++. +...+ .+++|++|+|++++| ++++++++++|+++|+++++|||+||+++.++++|+++++++
T Consensus 208 ~~~PIa~DEs~~~~~-~~~~~-~~~~d~i~ik~~k~GGi~~a~~i~~~A~~~gi~~~~~~~~es~i~~aa~~hla~~~~~ 285 (322)
T PRK05105 208 TGIAIAWDESLREPD-FQFEA-EPGVRAIVIKPTLTGSLEKCQELIEQAHALGLRAVISSSIESSLGLTQLARLAAWLTP 285 (322)
T ss_pred CCCCEEECCCCCchh-hhhhh-cCCCCEEEECccccCCHHHHHHHHHHHHHcCCcEEEECchhHHHHHHHHHHHHHhcCC
Confidence 889999999999975 44444 567999999999998 999999999999999999999999999999999999999955
Q ss_pred CceeccccccccccCCC
Q 015289 364 FKFIDLDTPLLLSEDPV 380 (409)
Q Consensus 364 ~~~~e~~~p~~~~~d~~ 380 (409)
..++.++++.++.+|+.
T Consensus 286 ~~~~~l~t~~~~~~d~~ 302 (322)
T PRK05105 286 DTIPGLDTLDLMQAQLV 302 (322)
T ss_pred CCCCCCChHHHHhhccc
Confidence 56777888877777754
No 26
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=100.00 E-value=1.6e-51 Score=403.19 Aligned_cols=293 Identities=20% Similarity=0.286 Sum_probs=240.5
Q ss_pred EEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCCHHHH
Q 015289 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129 (409)
Q Consensus 50 ~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (409)
+++++++++|++.||+++.|+.+.++.++|+|+|++|++||||+.|.|.|++|+.+.+...++.+.|.+.+ ..+
T Consensus 4 ~~~~~~~~lpl~~p~~~a~g~~~~~~~~iV~l~~~~G~~G~GE~~p~p~~~~et~~~~~~~l~~l~~~l~~------~~~ 77 (320)
T PRK02714 4 RFAFRPYQRPFRQPLQTAHGLWRIREGIILRLTDETGKIGWGEIAPLPWFGSETLEEALAFCQQLPGEITP------EQI 77 (320)
T ss_pred EEEEEEEEEecCCceEeccceEEEeEEEEEEEEeCCCCeEEEEecCCCCCCcccHHHHHHHHHhccccCCH------HHH
Confidence 56799999999999999999999999999999999999999999999999999888776555544444432 211
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEec
Q 015289 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV 209 (409)
Q Consensus 130 ~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKv 209 (409)
..+... ++.+++|||+|+.|+.++..+. ....++++.. +.+++++.+++++++++||++||+|+
T Consensus 78 -~~~~~~-----~~~~~~aie~A~d~~~~~~~~~--------~~~~~~~~~~--i~~~~~~~~~a~~~~~~G~~~~KvKv 141 (320)
T PRK02714 78 -FSIPDA-----LPACQFGFESALENESGSRSNV--------TLNPLSYSAL--LPAGEAALQQWQTLWQQGYRTFKWKI 141 (320)
T ss_pred -Hhhhhc-----CCHHHHHHHHHHHHHhcccccC--------CcCCCceeee--cCCCHHHHHHHHHHHHcCCCEEEEEE
Confidence 111111 2357999999933455544221 1123444443 44567888899999999999999999
Q ss_pred CC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh---CCCCCceeecCCCCCCHHHHHHhHHHhhcc
Q 015289 210 GK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE---MGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284 (409)
Q Consensus 210 G~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~---~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~ 284 (409)
|. ++++|+++|+++|+. ++++.|++|+|++|+.++|+++++.|++ +++ .|||||++.+|++++++|++ +
T Consensus 142 G~~~~~~d~~~v~air~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~l~~~~i--~~iEqP~~~~~~~~~~~l~~----~ 215 (320)
T PRK02714 142 GVDPLEQELKIFEQLLERLPAGAKLRLDANGGLSLEEAKRWLQLCDRRLSGKI--EFIEQPLPPDQFDEMLQLSQ----D 215 (320)
T ss_pred CCCChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCCc--cEEECCCCcccHHHHHHHHH----h
Confidence 95 578899999999997 7899999999999999999999999998 665 59999999999999999874 6
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCC
Q 015289 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 363 (409)
Q Consensus 285 ~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~ 363 (409)
+++||++|||++++.++.++++.+++|++|+|++|+| ++++ .++|+++|+++++|||+||+++.++++|+++++++
T Consensus 216 ~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GGi~~~---~~~a~~~gi~~~~~~~~es~ig~aa~~hlaa~~~~ 292 (320)
T PRK02714 216 YQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGSPSRL---RQFCQQHPLDAVFSSVFETAIGRKAALALAAELSR 292 (320)
T ss_pred CCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCCHHHH---HHHHHHhCCCEEEEechhhHHHHHHHHHHHHhCCC
Confidence 8999999999999999999999999999999999998 8754 47899999999999999999999999999999886
Q ss_pred C-ceecccccc
Q 015289 364 F-KFIDLDTPL 373 (409)
Q Consensus 364 ~-~~~e~~~p~ 373 (409)
. ..+-+++..
T Consensus 293 ~~~~~g~~~~~ 303 (320)
T PRK02714 293 PDRALGFGVTH 303 (320)
T ss_pred CCCCCCCCCcc
Confidence 2 234454433
No 27
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=100.00 E-value=1.3e-50 Score=404.12 Aligned_cols=287 Identities=17% Similarity=0.227 Sum_probs=245.1
Q ss_pred eeeeEEEEEEEECCCceEEEEeccCCccCccc-------HHHHHHHHH-HHHHHHcCCCCCCHHHHHHHHHhhc-CCChh
Q 015289 72 DQVENVAIRIELSNGCVGWGEAPVLPHVTAED-------QQTAMVKAS-EACEVLKESPAMALGSVFGVVAGLL-PGHQF 142 (409)
Q Consensus 72 ~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~-------~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~-~g~~~ 142 (409)
...+.++|+|+|++|.+|||||.+. .|++++ ...+...++ .++|.|+|+++.+++.+++.+.... .+...
T Consensus 47 ~~~~~vlV~i~tddG~~G~GE~~~~-~ysg~~g~~~~~~~~~~~~~i~~~laP~LiG~d~~~~~~l~~~~~~~~~~~~~~ 125 (408)
T TIGR01502 47 QPGESLSVLLVLEDGQVVHGDCAAV-QYSGAGGRDPLFLAKDFIPVIEKEVAPKLIGRDITNFKDMAEVFEKMTVNRNLH 125 (408)
T ss_pred ecCcEEEEEEEECCCCEEEEEeecc-eeccCccccccccHHHHHHHHHHHhhHHHcCCCccCHHHHHHHHHHHhhcCcch
Confidence 3468999999999999999999873 566664 444445555 4799999999999999999987753 12112
Q ss_pred hHHHHHHHHHHHHHHHhhcCCchHHHhC------CCCCeeeeeeeecC---CCHHHHHHHHHHHHHcC-CCeEEEecCCC
Q 015289 143 ASVRAAVEMALIDAVAKSVSMPLWRLFG------GVSNTITTDITIPI---VSPAEAAELASKYRKQG-FTTLKLKVGKN 212 (409)
Q Consensus 143 ~~a~said~AlwDl~gk~~g~Pl~~LLG------g~~~~i~~~~~i~~---~~~~~~~~~~~~~~~~G-f~~~KiKvG~~ 212 (409)
.++++|||+||||++||..|+|+|+||| +..+++|+|.+++. .+++++...+++++++| |+.+| |+|.+
T Consensus 126 ~a~kaavd~AL~D~~ak~~g~pl~~LLG~~~~~~~~~~~vp~~~s~g~~~~~~~d~m~~~a~~~~~~G~~~~~K-kvG~~ 204 (408)
T TIGR01502 126 TAIRYGVSQALLDAAAKTRKTTMAEVIRDEYNPGAETNAVPVFAQSGDDRYDNVDKMILKEVDVLPHGLINSVE-ELGLD 204 (408)
T ss_pred hHHHHHHHHHHHHHHHHHcCCcHHHHhCcccccCCcCCceeEEEEeeccCCCCHHHHHHHHHHHHhccCcccee-eecCC
Confidence 4578999999999999999999999998 66679999999875 56899999999999998 99999 89976
Q ss_pred hh-------HHHHHHHHHHhhCCCcEEEEeCCC------CCCHHHHHHHHHHHHh----CCCCCceeecCCCCCC----H
Q 015289 213 LK-------EDIEVLRAIRAVHPDSSFILDANE------GYKPQEAVEVLEKLYE----MGVTPVLFEQPVHRDD----W 271 (409)
Q Consensus 213 ~~-------~d~~~l~avr~~~~~~~l~vDaN~------~w~~~~A~~~~~~L~~----~~l~~~~iEeP~~~~d----~ 271 (409)
.. ++.++++++|+.+++..|++|+|+ +||+++|+++++.|++ +++ |||||++.+| +
T Consensus 205 ~~k~~~~~~~~~~ri~~lr~~g~~~~l~vDaN~~~~~~~~~~~~~ai~~l~~l~~~~~~~~~---~iEqPv~~~d~~~~~ 281 (408)
T TIGR01502 205 GEKLLEYVKWLRDRIIKLGREGYAPIFHIDVYGTIGEAFGVDIKAMADYIQTLAEAAKPFHL---RIEGPMDVGSRQAQI 281 (408)
T ss_pred HHHhhhhHHHHHHHHHHhhccCCCCeEEEEcCCCcccccCCCHHHHHHHHHHHHHhCccCCe---EEecCCCCCcchhhH
Confidence 43 444667777744668899999998 9999999999999986 553 9999999865 9
Q ss_pred HHHHHhHHHh-hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCC-chH
Q 015289 272 EGLGHVSHIA-KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETR 348 (409)
Q Consensus 272 ~~~~~l~~~~-~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~-es~ 348 (409)
+++++|++.+ .+.+++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|||. ||+
T Consensus 282 e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~~es~ 361 (408)
T TIGR01502 282 EAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTCNETN 361 (408)
T ss_pred HHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCCCCCH
Confidence 9999997521 1236899999999999999999999999999999999998 999999999999999999999986 999
Q ss_pred HHHHHHHHHHccCCC
Q 015289 349 LAMGFAGHLSAGLGC 363 (409)
Q Consensus 349 i~~~~~~hlaaa~~~ 363 (409)
++.++++|++++.+.
T Consensus 362 I~~aa~~Hlaaa~~~ 376 (408)
T TIGR01502 362 RSAEVTTHVGMATGA 376 (408)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999998764
No 28
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=6e-51 Score=402.48 Aligned_cols=287 Identities=17% Similarity=0.253 Sum_probs=232.3
Q ss_pred eEEEEEEEECCCceEEEEeccCC--ccCcccH----HHHHHHHH-HHHHHHcCCCCCCHHHHHHHHHhhc-CCCh-hhHH
Q 015289 75 ENVAIRIELSNGCVGWGEAPVLP--HVTAEDQ----QTAMVKAS-EACEVLKESPAMALGSVFGVVAGLL-PGHQ-FASV 145 (409)
Q Consensus 75 ~~~iVrl~td~G~~G~GE~~~~~--~~~~e~~----~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~-~g~~-~~~a 145 (409)
+.++|||+||+|++||||+.+.. ..++++. ......++ .+.|.|+|+++.+++.+|+.+++.. .|+. ...+
T Consensus 13 ~~vlV~I~tddG~~G~GEa~~~~~~~~~g~~~~~~~~~~~~~i~~~lap~LiG~d~~~i~~i~~~m~~~~~~g~~~~~aa 92 (369)
T cd03314 13 EAISVMLVLEDGQVAVGDCAAVQYSGAGGRDPLFLAADFIPVIEKVIAPALVGRDVANFRPAAAVLDKMRLDGNRLHTAI 92 (369)
T ss_pred cEEEEEEEECCCCEEEEecccccccCcCCcccccchHHHHHHHHHhhhhHhcCCCHHHHHHHHHHHHHHhhcCCcchhhH
Confidence 68999999999999999987531 1223322 22333344 4789999999999999999987643 2332 2357
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHhC-----CC-CCeeeeeeeecCC---CHHHHHHHHHHHHH---------cCCCeEEE
Q 015289 146 RAAVEMALIDAVAKSVSMPLWRLFG-----GV-SNTITTDITIPIV---SPAEAAELASKYRK---------QGFTTLKL 207 (409)
Q Consensus 146 ~said~AlwDl~gk~~g~Pl~~LLG-----g~-~~~i~~~~~i~~~---~~~~~~~~~~~~~~---------~Gf~~~Ki 207 (409)
+||||+||||++||.+|+|||+||| |. ++++++|.+++.. ..+++.++++++++ +||+.+|+
T Consensus 93 ksAIDiALwDl~gK~~g~Pv~~LLGg~~~~g~~r~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~kG~~~~K~ 172 (369)
T cd03314 93 RYGVSQALLDAVALAQRRTMAEVLCDEYGLPLADEPVPIFAQSGDDRYINVDKMILKGADVLPHALINNVEEKGPKGEKL 172 (369)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHcCCcccCCCcccceEEEEEecCcccccHHHHHHHHHhhhhhhhhhhHhhcCccHHHH
Confidence 8999999999999999999999999 32 5689999876643 34666665555543 36666666
Q ss_pred ecCCChhHHHHHHHHHHhhCCCcEEEEeCCCC----C--CHHHHHHHHHHHHhC-C-CCCceeecCCCCCC----HHHHH
Q 015289 208 KVGKNLKEDIEVLRAIRAVHPDSSFILDANEG----Y--KPQEAVEVLEKLYEM-G-VTPVLFEQPVHRDD----WEGLG 275 (409)
Q Consensus 208 KvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~----w--~~~~A~~~~~~L~~~-~-l~~~~iEeP~~~~d----~~~~~ 275 (409)
|. ++++|.++++++|..+++..|++|+|++ | |+++|+++++.|+++ + + +.|||||++++| +++|+
T Consensus 173 ~~--~~~~~~~~v~avr~~G~~~~l~vDaN~~w~~~~~~~~~~A~~~~~~Le~~~~~~-~~~iEqP~~~~d~~~~~~~~a 249 (369)
T cd03314 173 LE--YVKWLSDRIRKLGRPGYHPILHIDVYGTIGQAFDPDPDRAADYLATLEEAAAPF-PLRIEGPMDAGSREAQIERMA 249 (369)
T ss_pred HH--hHHHHHHHHHHHhhcCCCCEEEEEcCCccccccCCCHHHHHHHHHHHHHhcCCC-cEEEecCCCCCcchhhHHHHH
Confidence 54 4578899999999448999999999986 6 999999999999986 2 2 369999999865 89999
Q ss_pred HhHHHh-hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCC-chHHHHH
Q 015289 276 HVSHIA-KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMG 352 (409)
Q Consensus 276 ~l~~~~-~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~-es~i~~~ 352 (409)
+|++.. ++.+++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. +|+++.+
T Consensus 250 ~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~~~es~I~~a 329 (369)
T cd03314 250 ALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSCNETDISAR 329 (369)
T ss_pred HHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHH
Confidence 997521 1125899999999999999999999999999999999998 999999999999999999999874 9999999
Q ss_pred HHHHHHccCCCC
Q 015289 353 FAGHLSAGLGCF 364 (409)
Q Consensus 353 ~~~hlaaa~~~~ 364 (409)
+++|+++++++.
T Consensus 330 a~lHlaaa~~~~ 341 (369)
T cd03314 330 VTVHVALATRAD 341 (369)
T ss_pred HHHHHHHhcCCc
Confidence 999999998864
No 29
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=100.00 E-value=4.6e-50 Score=375.75 Aligned_cols=225 Identities=31% Similarity=0.545 Sum_probs=212.1
Q ss_pred EEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCCHHHHH
Q 015289 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVF 130 (409)
Q Consensus 51 i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (409)
|+++++++|++.||.++.++...++.++|||+|++|++||||+
T Consensus 1 i~~~~~~~p~~~~~~~~~~~~~~~~~~iv~l~~~~G~~G~Ge~------------------------------------- 43 (229)
T cd00308 1 VEVYAVRLPTSRPFYLAGGTADTNDTVLVKLTTDSGVVGWGEV------------------------------------- 43 (229)
T ss_pred CEEEEEEeecCCceEecCceEeeceeEEEEEEECCCCcchhhH-------------------------------------
Confidence 4678999999999999999999999999999999999999997
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEec
Q 015289 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV 209 (409)
Q Consensus 131 ~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKv 209 (409)
++||||||||+.||.+|+|+|+||||. ++++|+|.+
T Consensus 44 ---------------~~aid~Al~Dl~gk~~~~pl~~llgg~~~~~v~~~~~---------------------------- 80 (229)
T cd00308 44 ---------------ISGIDMALWDLAAKALGVPLAELLGGGSRDRVPAYGS---------------------------- 80 (229)
T ss_pred ---------------HHHHHHHHHHHhHhHcCCcHHHHcCCCCCCceeccHH----------------------------
Confidence 789999999999999999999999996 568888865
Q ss_pred CCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCe
Q 015289 210 GKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288 (409)
Q Consensus 210 G~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ip 288 (409)
+++++++|+. ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++ ++++|
T Consensus 81 -------~~~i~~lr~~~g~~~~l~lDaN~~~~~~~a~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~L~~----~~~~p 147 (229)
T cd00308 81 -------IERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYGL--AWIEEPCAPDDLEGYAALRR----RTGIP 147 (229)
T ss_pred -------HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCC--CeEECCCCccCHHHHHHHHh----hCCCC
Confidence 8899999998 6899999999999999999999999999986 49999999999999999875 67899
Q ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCcee
Q 015289 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI 367 (409)
Q Consensus 289 Ia~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~ 367 (409)
|++||++.+..++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++++|+++.++++|++++++|+.+.
T Consensus 148 Ia~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s~i~~~a~~hlaa~~~~~~~~ 227 (229)
T cd00308 148 IAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLESSIGTAAALHLAAALPNDRAI 227 (229)
T ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHHHHhCCCchhh
Confidence 999999999999999999999999999999998 9999999999999999999999999999999999999999997776
Q ss_pred c
Q 015289 368 D 368 (409)
Q Consensus 368 e 368 (409)
|
T Consensus 228 e 228 (229)
T cd00308 228 E 228 (229)
T ss_pred c
Confidence 5
No 30
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=100.00 E-value=7e-49 Score=451.12 Aligned_cols=332 Identities=24% Similarity=0.297 Sum_probs=266.3
Q ss_pred ccccceeeeEeEEEEEEEEecCccceeeccce--eeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHH-----
Q 015289 39 NLTQTFTVDVQRAENRPLNVPLIAPFTIATSR--LDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA----- 111 (409)
Q Consensus 39 ~~~~~~~mkI~~i~~~~~~~pl~~p~~~a~~~--~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~----- 111 (409)
..+..+.|||++|+++++++|++.||+++.|+ ...++.++|+|+|++|.+||||+.+.+. +.|+...+...+
T Consensus 924 ~~~~~~~~~I~~i~~~~~~lpl~~p~~~a~g~~~~~~r~~~lV~l~~ddG~~G~GEa~pl~~-~~et~~~~~~~l~~~~~ 1002 (1655)
T PLN02980 924 IIDGVFLCKISGMEYSLYRIQLCAPPTSASVDFSQFHREGFILSLSLEDGSVGFGEVAPLEI-HEEDLLDVEEQLRFLLH 1002 (1655)
T ss_pred cccccccceEeEEEEEEEEeeccCCcEeeccccccceeeEEEEEEEECCCCEEEEecCCCCC-CccccccHHHHHHHHHH
Confidence 35566899999999999999999999999875 3458999999999999999999998753 345433222111
Q ss_pred -------HHHHHHHcCCCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCC---------e
Q 015289 112 -------SEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN---------T 175 (409)
Q Consensus 112 -------~~~~~~l~g~~~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~---------~ 175 (409)
..+.|.++|++. +.+++.+.. ..+..++++++||||||||+.||..|+|+|+||||.++ +
T Consensus 1003 ~l~~~~~~~l~p~l~G~~~---~~~~~~l~~-~~~~~~psa~~ald~ALwDl~gk~~g~Pl~~LLGg~~~~~~~~~~~~~ 1078 (1655)
T PLN02980 1003 VIKGAKISFMLPLLKGSFS---SWIWSELGI-PPSSIFPSVRCGLEMAILNAIAVRHGSSLLNILDPYQKDENGSEQSHS 1078 (1655)
T ss_pred HHhhhhhhhhhHhhcCcch---HHHHHHhhc-cccccchHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCcceeccccc
Confidence 123577777743 333444321 11123467999999999999999999999999988432 3
Q ss_pred eeeeeee-cCCCHHHHHHHHHHHHHcCCCeEEEecCC--ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHH
Q 015289 176 ITTDITI-PIVSPAEAAELASKYRKQGFTTLKLKVGK--NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEK 251 (409)
Q Consensus 176 i~~~~~i-~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~--~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~ 251 (409)
++++..+ +..+++++.+++++++++||+++|+|+|. ++++|++++++||+. ++++.||+|||++|+.++|++++++
T Consensus 1079 v~v~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KlKvG~~~~~~~D~~~i~alRe~~G~~~~LrlDAN~~ws~~~A~~~~~~ 1158 (1655)
T PLN02980 1079 VQICALLDSNGSPLEVAYVARKLVEEGFSAIKLKVGRRVSPIQDAAVIQEVRKAVGYQIELRADANRNWTYEEAIEFGSL 1158 (1655)
T ss_pred eeeeeccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 5555544 35688999999999999999999999995 588999999999997 7899999999999999999999999
Q ss_pred HHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHH-----HHHHHHcCCCCEEEeCCCCCc-HHHH
Q 015289 252 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD-----VKKIVKGNLADVINIKLAKVG-VLGA 325 (409)
Q Consensus 252 L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~-----~~~~i~~~a~div~~k~~~~G-i~~~ 325 (409)
|+++++. |||||++ +.+++++|++ ++++|||+||++.+..+ ++.+++.++ +++++|++++| ++++
T Consensus 1159 L~~~~i~--~iEqPl~--~~~~l~~l~~----~~~iPIA~DEs~~~~~~~~~~~~~~~i~~~~-~~i~iK~~~~GGit~~ 1229 (1655)
T PLN02980 1159 VKSCNLK--YIEEPVQ--DEDDLIKFCE----ETGLPVALDETIDKFEECPLRMLTKYTHPGI-VAVVIKPSVVGGFENA 1229 (1655)
T ss_pred HhhcCCC--EEECCCC--CHHHHHHHHH----hCCCCEEeCCCcCCcccchHHHHHHHHHCCC-eEEEeChhhhCCHHHH
Confidence 9999874 9999997 4678888864 68999999999998754 677777764 58899999998 9999
Q ss_pred HHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCC---------------ceeccccccccccCCCCCCe
Q 015289 326 LEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF---------------KFIDLDTPLLLSEDPVLDGY 384 (409)
Q Consensus 326 ~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~---------------~~~e~~~p~~~~~d~~~~~~ 384 (409)
++++++|+++|+++++||++||+|++++++|+|+.++.. ..+-+++..++.+|+...++
T Consensus 1230 ~~ia~~A~~~gi~~~~~s~~es~Ig~aA~~hlaa~~~~~~~~~~~~~~~~~~~~~a~Gl~t~~~~~~d~~~~pl 1303 (1655)
T PLN02980 1230 ALIARWAQQHGKMAVISAAYESGLGLSAYIQFASYLEMQNAKASREMNKGTCPSVAHGLGTYRWLKEDVTMNPL 1303 (1655)
T ss_pred HHHHHHHHHcCCeEEecCcccCHHHHHHHHHHHHhchhhcccccccccccCCCCcCCCCchHhHhhccCccCCc
Confidence 999999999999999999999999999999999987422 12334555556667654443
No 31
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=100.00 E-value=2.1e-42 Score=337.78 Aligned_cols=280 Identities=26% Similarity=0.391 Sum_probs=231.2
Q ss_pred EEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 015289 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFG 131 (409)
Q Consensus 52 ~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 131 (409)
++..+++||+-.| ...+.|+.++++ |-.||||.+|.+.|+.|.. ..+
T Consensus 13 ~~~~~~~p~~~~~----~~~~~r~~~~~~-----~~~~w~e~~p~~~~~~~~~----------~~~-------------- 59 (327)
T PRK02901 13 RAHVVALPMRVRF----RGITVREAVLIE-----GPAGWGEFSPFLEYDPAEA----------AAW-------------- 59 (327)
T ss_pred cCeEEeccccccc----CCcceeEEEEEe-----cCCceEEecCCCCCCHHHH----------HHH--------------
Confidence 3556778887433 456788999988 9999999999887765511 011
Q ss_pred HHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC
Q 015289 132 VVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK 211 (409)
Q Consensus 132 ~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~ 211 (409)
..+++|.|- .+-|- ..+++||+|.+++..+++++.+.++++ .||+++|+|+|.
T Consensus 60 -------------~~~~~~~~~-------~~~~~-----~~r~~vp~~~tv~~~~~e~~~~~~~~~--~G~~~~KvKVg~ 112 (327)
T PRK02901 60 -------------LASAIEAAY-------GGPPP-----PVRDRVPVNATVPAVDAAQVPEVLARF--PGCRTAKVKVAE 112 (327)
T ss_pred -------------HHHHHHhhh-------ccCCc-----ccCCeEEeeEEeCCCCHHHHHHHHHHh--CCCCEEEEEECC
Confidence 134455442 11121 345789999998888887776666554 699999999973
Q ss_pred ---ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHH-HhCCCCCceeecCCCCCCHHHHHHhHHHhhccCC
Q 015289 212 ---NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286 (409)
Q Consensus 212 ---~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L-~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ 286 (409)
++++|++++++||+. ||+..|++|+|++||+++|+++++.| +++++ .||||||+. ++++++|++ +++
T Consensus 113 ~~~~~~~Di~rv~avRe~lGpd~~LrvDAN~~ws~~~Ai~~~~~L~e~~~l--~~iEqP~~~--~~~la~Lr~----~~~ 184 (327)
T PRK02901 113 PGQTLADDVARVNAVRDALGPDGRVRVDANGGWSVDEAVAAARALDADGPL--EYVEQPCAT--VEELAELRR----RVG 184 (327)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHhhhccCc--eEEecCCCC--HHHHHHHHH----hCC
Confidence 688999999999998 79999999999999999999999999 77886 599999974 888998874 689
Q ss_pred CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCc
Q 015289 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFK 365 (409)
Q Consensus 287 ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~ 365 (409)
+|||+|||+++..++.++++.+++|++|+|++++| ++++++ +|+++|+++++||+++|++++++++|+++++++..
T Consensus 185 vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GGit~~lk---iA~~~gi~v~v~s~~es~ig~aA~lhlaaalp~~~ 261 (327)
T PRK02901 185 VPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGGVRAALD---IAEQIGLPVVVSSALDTSVGIAAGLALAAALPELD 261 (327)
T ss_pred CCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCHHHHHH---HHHHcCCcEEEeCCcccHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999998 988887 57899999999999999999999999999999877
Q ss_pred e-eccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 366 F-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 366 ~-~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+ +++++..++..|+ .+++.++||++.+|+ +++|++.+
T Consensus 262 ~~~gl~t~~~~~~dl-~~~l~~~dG~i~vp~-----v~~d~~~l 299 (327)
T PRK02901 262 HACGLATGGLFEEDV-ADPLLPVDGFLPVRR-----VTPDPARL 299 (327)
T ss_pred cccccCchhhhhhcc-CCCceeeCCEEeCCC-----CCCCHHHH
Confidence 6 6777654555677 677889999999998 78988765
No 32
>PRK00077 eno enolase; Provisional
Probab=100.00 E-value=8.7e-40 Score=330.77 Aligned_cols=300 Identities=21% Similarity=0.278 Sum_probs=234.6
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC----------------CccCcccHHHHHH
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL----------------PHVTAEDQQTAMV 109 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~----------------~~~~~e~~~~~~~ 109 (409)
|+|++|..+.+- .|.| ++++.|+|+|++|.+|+|+++.. ..|.++++..++.
T Consensus 2 ~~I~~v~~r~i~--------dsrg----~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~ 69 (425)
T PRK00077 2 SKIEDIIAREIL--------DSRG----NPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLGKGVLKAVE 69 (425)
T ss_pred CeEEEEEEEEEE--------cCCC----CeEEEEEEEECCCCEEEEEEeccCCCCcceeeecCCCCccccCCcCHHHHHH
Confidence 689999988862 2333 57899999999999999997531 1255666677777
Q ss_pred HHHH-HHHHHcCCCCCCHHHHHHHHHhhc----CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCC---eeeeeee
Q 015289 110 KASE-ACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN---TITTDIT 181 (409)
Q Consensus 110 ~~~~-~~~~l~g~~~~~~~~~~~~~~~~~----~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~---~i~~~~~ 181 (409)
.+++ +.|.|+|+++.+++.+++.|.+.. .++....+++|||||+||+.||..|+|||+||||..+ .+|.|..
T Consensus 70 ~v~~~iap~LiG~d~~d~~~id~~l~~ldgt~~~~~~G~nAi~avsiAl~da~ak~~g~PLy~lLGG~~~~~~pvp~~n~ 149 (425)
T PRK00077 70 NVNEEIAPALIGLDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKAAADSLGLPLYRYLGGPNAKVLPVPMMNI 149 (425)
T ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhhCccccCccchHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCcccccceeEEE
Confidence 6754 789999999999999999887531 1111146899999999999999999999999999543 4555544
Q ss_pred ecC----CCHHHH------------HHHHHHHHHcCCCeEEE---------ecC------CChhHHHHHHHHHHhh----
Q 015289 182 IPI----VSPAEA------------AELASKYRKQGFTTLKL---------KVG------KNLKEDIEVLRAIRAV---- 226 (409)
Q Consensus 182 i~~----~~~~~~------------~~~~~~~~~~Gf~~~Ki---------KvG------~~~~~d~~~l~avr~~---- 226 (409)
++. ....++ .+++.++..++|+.+|. ++| ++++.|.++|+++|++
T Consensus 150 i~GG~ha~~~~~~qe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~g~~~~vGdeGg~~p~~~~~~e~l~~lreAi~~a 229 (425)
T PRK00077 150 INGGAHADNNVDIQEFMIMPVGAPSFKEALRMGAEVFHTLKKVLKEKGLSTAVGDEGGFAPNLKSNEEALDLILEAIEKA 229 (425)
T ss_pred EcccccccCchhhhHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCcCCcCCCccchHHHHHHHHHHHHHh
Confidence 321 111111 13344445566888886 355 4568899999999986
Q ss_pred ----CCCcEEEEeCC-------CC-------CCHHHHHHHHHH-HHhCCCCCceeecCCCCCCHHHHHHhHHHhhccC--
Q 015289 227 ----HPDSSFILDAN-------EG-------YKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF-- 285 (409)
Q Consensus 227 ----~~~~~l~vDaN-------~~-------w~~~~A~~~~~~-L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~-- 285 (409)
|+++.|++|+| +. |+.+++++++.+ +++|++ .|||||++++|++++++|++ ++
T Consensus 230 g~~~G~di~l~lD~aas~~~~~~~y~~~~~~~s~~e~~~~~~~l~e~y~i--~~iEdPl~~~D~~g~~~L~~----~~~~ 303 (425)
T PRK00077 230 GYKPGEDIALALDCAASEFYKDGKYVLEGEGLTSEEMIDYLAELVDKYPI--VSIEDGLDENDWEGWKLLTE----KLGD 303 (425)
T ss_pred cCCCCCceEEEEehhhhhcccCCeeeccCCcCCHHHHHHHHHHHHhhCCc--EEEEcCCCCccHHHHHHHHH----hcCC
Confidence 67899999993 43 577787776555 566886 59999999999999999985 45
Q ss_pred CCeEEeCCC-CCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEE-ccCCchHHHHHHHHHHHccCC
Q 015289 286 GVSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMI-GGMVETRLAMGFAGHLSAGLG 362 (409)
Q Consensus 286 ~ipIa~dEs-~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~-~~~~es~i~~~~~~hlaaa~~ 362 (409)
.+||++||+ ++++++++++++.+++|++|+|++++| ++++++++++|+++|+.+++ |++.||..+..+.+|++++.+
T Consensus 304 ~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~vsh~sgEt~d~~~a~lava~~~~ 383 (425)
T PRK00077 304 KVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGYTAVVSHRSGETEDTTIADLAVATNAG 383 (425)
T ss_pred CCeEEcCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEeCCCCcchHHHHHHHHHHhCCc
Confidence 599999997 578999999999999999999999998 99999999999999998765 889999999888888877654
Q ss_pred C
Q 015289 363 C 363 (409)
Q Consensus 363 ~ 363 (409)
.
T Consensus 384 ~ 384 (425)
T PRK00077 384 Q 384 (425)
T ss_pred c
Confidence 3
No 33
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=100.00 E-value=7.5e-39 Score=322.36 Aligned_cols=283 Identities=21% Similarity=0.320 Sum_probs=224.9
Q ss_pred eeEEEEEEEECCCceEEEEeccC--C--------------ccCcccHHHHHHHHHH-HHHHHcCCCCCCHHHHHHHHHhh
Q 015289 74 VENVAIRIELSNGCVGWGEAPVL--P--------------HVTAEDQQTAMVKASE-ACEVLKESPAMALGSVFGVVAGL 136 (409)
Q Consensus 74 ~~~~iVrl~td~G~~G~GE~~~~--~--------------~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~~~~~ 136 (409)
.+++.|+|+|++|.+|+|+++.. . .|+++++..++..+++ +.|.|+|+++.+.+.+++.|.+.
T Consensus 13 ~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~dq~~id~~l~~~ 92 (408)
T cd03313 13 NPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVLKAVKNVNEIIAPALIGMDVTDQRAIDKLLIEL 92 (408)
T ss_pred CceEEEEEEECCCCEEEEeecCCCCCCcceeeecCCCCcccccCCcHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Confidence 57899999999999999998641 1 2677778888877764 78999999999999999988653
Q ss_pred c----CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCC-eeeee--eeecC--C-----C-------H--HHHHHH
Q 015289 137 L----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN-TITTD--ITIPI--V-----S-------P--AEAAEL 193 (409)
Q Consensus 137 ~----~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~-~i~~~--~~i~~--~-----~-------~--~~~~~~ 193 (409)
. .+...+.+++|||||+||+.||.+|+|||++|||..+ ++|++ ..++. . + | .+..++
T Consensus 93 dgt~~~~~~G~nAi~avsiAl~da~A~~~g~PLy~~Lgg~~~~~lpvp~~nvi~GG~ha~~~~~iqe~~i~p~~~~~~~e 172 (408)
T cd03313 93 DGTPNKSKLGANAILGVSLAVAKAAAAALGLPLYRYLGGLAAYVLPVPMFNVINGGAHAGNKLDFQEFMIVPVGAPSFSE 172 (408)
T ss_pred cCCCcccccchHHHHHHHHHHHHHHHHHcCCcHHHHhcCCCCcccceeeEEEecCcccccCccccccccccccCccCHHH
Confidence 2 1122246899999999999999999999999999644 55544 32221 0 1 1 222355
Q ss_pred HHHHHHcCCCeEE-----------EecC------CChhHHHHHHHHHHhh--------CCCcEEEEeC------------
Q 015289 194 ASKYRKQGFTTLK-----------LKVG------KNLKEDIEVLRAIRAV--------HPDSSFILDA------------ 236 (409)
Q Consensus 194 ~~~~~~~Gf~~~K-----------iKvG------~~~~~d~~~l~avr~~--------~~~~~l~vDa------------ 236 (409)
+.++..+||+.+| +++| ++++.|.++|+.+|++ |+++.|++|+
T Consensus 173 a~~~~~~~~~~lK~~l~~~~g~~~~~vgdeGg~~p~~~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~ 252 (408)
T cd03313 173 ALRMGAEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYV 252 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhcCccccccccccCcCCCCCChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcce
Confidence 6677778898888 3333 4667899988888873 3589999999
Q ss_pred -----CCCCCHHHHHHHHHHH-HhCCCCCceeecCCCCCCHHHHHHhHHHhhccC--CCeEEeCCC-CCCHHHHHHHHHc
Q 015289 237 -----NEGYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF--GVSVAADES-CRSLDDVKKIVKG 307 (409)
Q Consensus 237 -----N~~w~~~~A~~~~~~L-~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~--~ipIa~dEs-~~~~~~~~~~i~~ 307 (409)
|+.||+++|+++++.| +++++ .|||||++++|++++++|++ ++ .+||++||. ++++++++++++.
T Consensus 253 ~~~~~~~~~t~~eai~~~~~l~e~~~i--~~iEdPl~~~D~eg~~~L~~----~~g~~ipi~gdE~~~~~~~~~~~~i~~ 326 (408)
T cd03313 253 YDSDEGKKLTSEELIDYYKELVKKYPI--VSIEDPFDEDDWEGWAKLTA----KLGDKIQIVGDDLFVTNPERLKKGIEK 326 (408)
T ss_pred eccCCCcccCHHHHHHHHHHHHHhCCc--EEEEeCCCCcCHHHHHHHHH----hcCCCCeEEcCCcccCCHHHHHHHHHh
Confidence 4557889999988886 56886 59999999999999999985 44 799999995 6799999999999
Q ss_pred CCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEE-ccCCchHHHHHHHHHHHccCC
Q 015289 308 NLADVINIKLAKVG-VLGALEIIEVVRASGLNLMI-GGMVETRLAMGFAGHLSAGLG 362 (409)
Q Consensus 308 ~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~-~~~~es~i~~~~~~hlaaa~~ 362 (409)
+++|++|+|++++| ++++++++++|+++|+++++ |++.||..+..+.+|++.+.+
T Consensus 327 ~a~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~sh~sget~d~~~adlava~~~~ 383 (408)
T cd03313 327 KAANALLIKVNQIGTLTETIEAIKLAKKNGYGVVVSHRSGETEDTFIADLAVALGAG 383 (408)
T ss_pred CCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEccCCCchhHHHHHHHHHHHhCcC
Confidence 99999999999998 99999999999999999977 778888887655555554443
No 34
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=100.00 E-value=3.3e-38 Score=319.23 Aligned_cols=286 Identities=21% Similarity=0.307 Sum_probs=219.7
Q ss_pred eeEEEEEEEECCCceEEEEeccCC----------------ccCcccHHHHHHHHHH-HHHHHcCCCCCCHHHHHHHHHhh
Q 015289 74 VENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAMVKASE-ACEVLKESPAMALGSVFGVVAGL 136 (409)
Q Consensus 74 ~~~~iVrl~td~G~~G~GE~~~~~----------------~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~~~~~ 136 (409)
.+++.|+|+|++|..|+++++... .|.+.++..++..+++ +.|.|+|+++.+++.+++.|.+.
T Consensus 15 ~ptvev~v~~~~g~~g~~~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~d~~~id~~l~~~ 94 (425)
T TIGR01060 15 NPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKGVLKAVENVNDIIAPALIGMDAFDQREIDQIMIEL 94 (425)
T ss_pred CceEEEEEEECCCCEEEEeccCCCCCCcceeeeccCCCccccCCcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 478999999999999999976421 1334455666666654 78999999999999999999652
Q ss_pred --cCCC--hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeee--c--C-----CCHHHH---------HHH
Q 015289 137 --LPGH--QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITI--P--I-----VSPAEA---------AEL 193 (409)
Q Consensus 137 --~~g~--~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i--~--~-----~~~~~~---------~~~ 193 (409)
.++. ....+++|||||+||+.||.+|+|||+||||. ++++|+++.. + . .+.+++ .++
T Consensus 95 d~t~~~~~~G~nAi~avs~Al~da~ak~~g~Ply~lLGG~~~~~lPvp~~n~i~GG~~a~~~~~~qe~~i~p~~a~~~~e 174 (425)
T TIGR01060 95 DGTPNKSKLGANAILGVSMAVAKAAAKSLGLPLYRYLGGKNAYVLPVPMMNIINGGAHADNNLDFQEFMIMPVGAKSFRE 174 (425)
T ss_pred CCcCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCCceeeEEEEeecccccccCccCHHHHhccccchHHHHH
Confidence 1211 12368999999999999999999999999996 4577776432 1 1 123332 233
Q ss_pred HHHHHHcCCCeEE--Ee-------cC------CChh---HHHHH----HHHHHhh-CCCcEEEEeCCCC-----------
Q 015289 194 ASKYRKQGFTTLK--LK-------VG------KNLK---EDIEV----LRAIRAV-HPDSSFILDANEG----------- 239 (409)
Q Consensus 194 ~~~~~~~Gf~~~K--iK-------vG------~~~~---~d~~~----l~avr~~-~~~~~l~vDaN~~----------- 239 (409)
+.+...+||+.+| +| +| ++++ ++++. +++++.. ++++.|++|+|.+
T Consensus 175 ~~~~~~~g~~~lK~~l~~~~~~~~vGdeGg~~p~~~~~~~~l~~~~~ai~~~~~~~G~di~l~lD~aas~~~~~~~~~y~ 254 (425)
T TIGR01060 175 ALRMGAEVFHALKKLLKEKGLATGVGDEGGFAPNLASNEEALEIISEAIEKAGYKPGEDVALALDCAASEFYDEEDGKYV 254 (425)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcccccCCCccccHHHHHHHHHHHHHHhhccCCceEEEEEccccccccccCceee
Confidence 3333447899999 44 45 2222 33333 3333333 6789999999832
Q ss_pred -------CCHHHHHHHHHH-HHhCCCCCceeecCCCCCCHHHHHHhHHHhhccC--CCeEEeCCCC-CCHHHHHHHHHcC
Q 015289 240 -------YKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF--GVSVAADESC-RSLDDVKKIVKGN 308 (409)
Q Consensus 240 -------w~~~~A~~~~~~-L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~--~ipIa~dEs~-~~~~~~~~~i~~~ 308 (409)
||.++|+++++. ++++++ .|||||++++|++++++|++ ++ .+||++||+. +++++++++++.+
T Consensus 255 ~~~~~~~~s~~eai~~~~~lle~~~i--~~iEdPl~~~D~~~~~~L~~----~~~~~ipI~gDE~~~t~~~~~~~~i~~~ 328 (425)
T TIGR01060 255 YKGENKQLTSEEMIEYYKELVEKYPI--VSIEDGLSEEDWEGWAELTK----ELGDKVQIVGDDLFVTNTEILREGIEMG 328 (425)
T ss_pred ecCcccccCHHHHHHHHHHHHhcCCc--EEEEcCCCcccHHHHHHHHH----hcCCCCeEEeCCCcccCHHHHHHHHHhC
Confidence 466799999995 678886 59999999999999999975 56 7999999985 5699999999999
Q ss_pred CCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEE-EccCCchHHHHHHHHHHHccCCCCc
Q 015289 309 LADVINIKLAKVG-VLGALEIIEVVRASGLNLM-IGGMVETRLAMGFAGHLSAGLGCFK 365 (409)
Q Consensus 309 a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~-~~~~~es~i~~~~~~hlaaa~~~~~ 365 (409)
++|++|+|++++| ++++++++++|+++|++++ .|++.||.++..+.+|++++.+...
T Consensus 329 a~d~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h~sgEt~d~~~a~lava~~~~~ik 387 (425)
T TIGR01060 329 VANSILIKPNQIGTLTETLDAVELAKKAGYTAVISHRSGETEDTTIADLAVALNAGQIK 387 (425)
T ss_pred CCCEEEecccccCCHHHHHHHHHHHHHcCCcEEEecCCcccHHHHHHHHHHHhCcCccc
Confidence 9999999999998 9999999999999999955 6888899999999999988776443
No 35
>PLN00191 enolase
Probab=100.00 E-value=4e-32 Score=274.68 Aligned_cols=300 Identities=19% Similarity=0.252 Sum_probs=229.7
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCc----------eEEEEeccCC----ccCcccHHHHHHHH
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGC----------VGWGEAPVLP----HVTAEDQQTAMVKA 111 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~----------~G~GE~~~~~----~~~~e~~~~~~~~~ 111 (409)
|+|++|+.+.+- .|.| .+++.|+|+|++|. +|++|+.... .|.+..+..++..+
T Consensus 26 ~~I~~v~~r~il--------dsrG----~PtVeveV~~~~G~~~a~~psgastG~~Ea~elrd~~~~~~g~gv~~Av~~v 93 (457)
T PLN00191 26 ATITKVKARQII--------DSRG----NPTVEVDLHTSKGMFRAAVPSGASTGIYEALELRDGDKDYLGKGVLKAVKNV 93 (457)
T ss_pred CeeeEEEEEEEE--------cCCC----CeEEEEEEEECCCCEEEEeccCCCCCcceeeeccCCCcccCCccHHHHHHHH
Confidence 699999998862 3333 47899999999998 8999985431 15556677777777
Q ss_pred HH-HHHHHcCCCCCCHHHHHHHHHhhc----CCChhhHHHHHHHHHHHHHHHhhcCCchHHHh---CCC-CCeeeeeee-
Q 015289 112 SE-ACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLF---GGV-SNTITTDIT- 181 (409)
Q Consensus 112 ~~-~~~~l~g~~~~~~~~~~~~~~~~~----~g~~~~~a~said~AlwDl~gk~~g~Pl~~LL---Gg~-~~~i~~~~~- 181 (409)
++ +.|.|+|+++.+.+.+++.|.+.- .+...+.++.|++||+|++.|+..|+|||++| ||. ...+|++..
T Consensus 94 ~~~ia~~LiG~~~~dq~~iD~~l~~ldgt~nk~~lGanailavS~A~a~AaA~~~~~PLy~~l~~~gg~~~~~lP~p~~n 173 (457)
T PLN00191 94 NEIIAPALIGMDPTDQTQIDNFMLELDGTPNKGKLGANAILAVSLAVCKAGAAEKGVPLYKHIADLAGNKKLVLPVPAFN 173 (457)
T ss_pred HHHHHHHHcCCChhhHHHHHHHHHHccCCCCccccchhHHHHHHHHHHHHHHHHcCCcHHHHHHhhCCCCCccccceeEE
Confidence 64 789999999999999988886532 12223568999999999999999999999999 774 446776641
Q ss_pred -e--c------------------CCCHHHHHH-------HHHHHHHc--CCCeEEEecC------CChhHHHHHHHHHHh
Q 015289 182 -I--P------------------IVSPAEAAE-------LASKYRKQ--GFTTLKLKVG------KNLKEDIEVLRAIRA 225 (409)
Q Consensus 182 -i--~------------------~~~~~~~~~-------~~~~~~~~--Gf~~~KiKvG------~~~~~d~~~l~avr~ 225 (409)
+ + ..+..+..+ ..++.++. |... ..+| ++++.+.+.|+.+++
T Consensus 174 iinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~--~~vgdeGg~ap~~~~~~eal~ll~e 251 (457)
T PLN00191 174 VINGGSHAGNKLAMQEFMILPVGASSFKEAMQMGSEVYHHLKAVIKKKYGQDA--CNVGDEGGFAPNIQDNKEGLELLKE 251 (457)
T ss_pred eecCccccccccchheeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCc--CccCCCCCcCCCCCCHHHHHHHHHH
Confidence 1 1 011222211 11222222 3321 1233 356666776766666
Q ss_pred h----C--CCcEEEEeCCCC--------C---------------CHHHHHHHHHHHHh-CCCCCceeecCCCCCCHHHHH
Q 015289 226 V----H--PDSSFILDANEG--------Y---------------KPQEAVEVLEKLYE-MGVTPVLFEQPVHRDDWEGLG 275 (409)
Q Consensus 226 ~----~--~~~~l~vDaN~~--------w---------------~~~~A~~~~~~L~~-~~l~~~~iEeP~~~~d~~~~~ 275 (409)
+ + +++.|.+|+..+ | |.++++++++.|.+ |++ .|||||++.+|+++++
T Consensus 252 Ai~~ag~~~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I--~~IEDPl~~~D~eg~~ 329 (457)
T PLN00191 252 AIEKAGYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPI--VSIEDPFDQDDWEHWA 329 (457)
T ss_pred HHHHcCCCCceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCc--EEEECCCCcccHHHHH
Confidence 4 2 479999998543 3 78899999999655 875 5999999999999999
Q ss_pred HhHHHhhccCCCeEEeCCCC-CCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEcc-CCchHHHHH
Q 015289 276 HVSHIAKDKFGVSVAADESC-RSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG-MVETRLAMG 352 (409)
Q Consensus 276 ~l~~~~~~~~~ipIa~dEs~-~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~-~~es~i~~~ 352 (409)
+|++ +..+||++||+. +++.+++++++.+++|++++|++++| ++++++++++|+++|+++++++ |.||+++..
T Consensus 330 ~Lt~----~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~a~lA~~~G~~~~ishrsgET~d~~~ 405 (457)
T PLN00191 330 KLTS----LEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTSHRSGETEDSFI 405 (457)
T ss_pred HHHc----cCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHCCCEEEeCCCCccchHHHH
Confidence 9975 578999999985 88999999999999999999999998 9999999999999999999965 999999999
Q ss_pred HHHHHHccCCCCc
Q 015289 353 FAGHLSAGLGCFK 365 (409)
Q Consensus 353 ~~~hlaaa~~~~~ 365 (409)
+.+|+|++.+.+.
T Consensus 406 Adlava~~~~~ik 418 (457)
T PLN00191 406 ADLAVGLATGQIK 418 (457)
T ss_pred HHHHHHhCCCccc
Confidence 9999999876543
No 36
>PTZ00081 enolase; Provisional
Probab=99.98 E-value=5.6e-30 Score=258.14 Aligned_cols=297 Identities=21% Similarity=0.277 Sum_probs=217.4
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCc----------eEEEEeccCC-----ccCcccHHHHHH
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGC----------VGWGEAPVLP-----HVTAEDQQTAMV 109 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~----------~G~GE~~~~~-----~~~~e~~~~~~~ 109 (409)
.|+|++|+.+.+- .|.| ++++.|+|+|++|. +|++|+..+. .|.+..+..++.
T Consensus 1 ~~~I~~v~~r~i~--------dSrg----~ptvev~v~~~~G~~~a~~psgastG~~Ea~elrd~~~~~y~g~gv~~Av~ 68 (439)
T PTZ00081 1 MSTIKSIKAREIL--------DSRG----NPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVE 68 (439)
T ss_pred CcEEEEEEEEEEe--------cCCC----CceEEEEEEECCCCEEEecccCCCCceeeEeeccCCCccccCCccHHHHHH
Confidence 4789999998862 3333 57899999999998 9999985422 255666777777
Q ss_pred HHHH-HHHHHcCCCCCCHHHHHHHHHhh---c-------CCChhhHHHHHHHHHHHHHHHhhcCCchHHHh---CCCC--
Q 015289 110 KASE-ACEVLKESPAMALGSVFGVVAGL---L-------PGHQFASVRAAVEMALIDAVAKSVSMPLWRLF---GGVS-- 173 (409)
Q Consensus 110 ~~~~-~~~~l~g~~~~~~~~~~~~~~~~---~-------~g~~~~~a~said~AlwDl~gk~~g~Pl~~LL---Gg~~-- 173 (409)
.+++ +.|.|+|+++.+.+.+++.|.+. . .+...+.++.|++||+|++.|+..|+|||++| ||..
T Consensus 69 ~v~~~i~~~LiG~d~~dq~~iD~~l~~~ldgt~n~~~~~ks~lGanailavS~A~a~AaA~~~~~PLy~yL~~~~g~~~~ 148 (439)
T PTZ00081 69 NVNEIIAPALIGKDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSMAVARAAAAAKGVPLYKYLAQLAGKPTD 148 (439)
T ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhccCCcccccccccccchHHHHHHHHHHHHHHHHHcCCcHHHHHHHhcCCccC
Confidence 7765 78999999999999999888663 1 11122568999999999999999999999999 6641
Q ss_pred -Cee--eeeeeecC--------------------CCHHHHHH-------HHHHHHHc--CCCeEEEecC------CChhH
Q 015289 174 -NTI--TTDITIPI--------------------VSPAEAAE-------LASKYRKQ--GFTTLKLKVG------KNLKE 215 (409)
Q Consensus 174 -~~i--~~~~~i~~--------------------~~~~~~~~-------~~~~~~~~--Gf~~~KiKvG------~~~~~ 215 (409)
..+ |++..++. .+..+..+ ..++.++. |... ..+| ++++.
T Consensus 149 ~~~lP~P~~niinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~--~~vgdeGgfap~~~~ 226 (439)
T PTZ00081 149 KFVLPVPCFNVINGGKHAGNKLAFQEFMIAPVGAPSFKEALRMGAEVYHSLKSVIKKKYGLDA--TNVGDEGGFAPNIKD 226 (439)
T ss_pred CccccceeEEeccCcccccccccceEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCc--cccccCCCcCCCCCC
Confidence 133 44442221 11222211 12222222 3321 1233 34445
Q ss_pred HHHHHHHHHh----hC--CCcEEEEeCCC------------------------CCCHHHHHHHH-HHHHhCCCCCceeec
Q 015289 216 DIEVLRAIRA----VH--PDSSFILDANE------------------------GYKPQEAVEVL-EKLYEMGVTPVLFEQ 264 (409)
Q Consensus 216 d~~~l~avr~----~~--~~~~l~vDaN~------------------------~w~~~~A~~~~-~~L~~~~l~~~~iEe 264 (409)
+.+.++.+++ ++ +++.|.+|+.. .+|.+|.+++. +.++++++ .||||
T Consensus 227 ~eeal~ll~eAi~~ag~~~~v~i~lD~Aase~~~~~~~~Y~~~f~~~~~~~~~~~s~~eli~~~~~~l~~y~I--~~IED 304 (439)
T PTZ00081 227 PEEALDLLVEAIKKAGYEGKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPI--VSIED 304 (439)
T ss_pred HHHHHHHHHHHHHHcCCcCceEEEEehhhhhhhhccCCceeeeeccccCccccccCHHHHHHHHHHHHhcCCc--EEEEc
Confidence 5555555544 43 46888888733 25666767754 67889986 59999
Q ss_pred CCCCCCHHHHHHhHHHhhccC--CCeEEeCCC-CCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEE
Q 015289 265 PVHRDDWEGLGHVSHIAKDKF--GVSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 265 P~~~~d~~~~~~l~~~~~~~~--~ipIa~dEs-~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~ 340 (409)
|++.+|++++++|++ ++ .+||+.||. ++++.++++.++.+++|++++|++++| ++++++++++|+++|+.++
T Consensus 305 Pl~~~D~eg~~~Lt~----~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~i 380 (439)
T PTZ00081 305 PFDQDDWEAYAKLTA----AIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVM 380 (439)
T ss_pred CCCcccHHHHHHHHH----hhCCCceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHHHHHHHHHHHHHcCCcEE
Confidence 999999999999986 45 799999997 678999999999999999999999998 9999999999999999999
Q ss_pred EccCC-chHHHHHHHHHHHccCCC
Q 015289 341 IGGMV-ETRLAMGFAGHLSAGLGC 363 (409)
Q Consensus 341 ~~~~~-es~i~~~~~~hlaaa~~~ 363 (409)
++++. ||. ..+.+|||.++++
T Consensus 381 ishrsgETe--d~~iadLAVa~~~ 402 (439)
T PTZ00081 381 VSHRSGETE--DTFIADLVVGLGT 402 (439)
T ss_pred EeCCCchhH--HHHHHHHHHHcCC
Confidence 96654 655 5677899998864
No 37
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=99.93 E-value=9.4e-25 Score=195.16 Aligned_cols=274 Identities=21% Similarity=0.256 Sum_probs=207.5
Q ss_pred EEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHH-HHHHcCCCCCCHHH
Q 015289 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEA-CEVLKESPAMALGS 128 (409)
Q Consensus 50 ~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~-~~~l~g~~~~~~~~ 128 (409)
+.++|++.+|+....-.....+.+|++++|++. +++..||||..|+|+|+.|+.+.+-.+.... -.++.|..+.+
T Consensus 3 sa~lYry~iPmdsgviLR~r~Lk~RdGl~V~l~-~~~r~gwGEIaPLPgFSqETleqAq~~a~~wl~~W~~g~~~~d--- 78 (321)
T COG1441 3 SAQLYRYQIPMDAGVILRDRRLKTRDGLYVCLR-EGEREGWGEIAPLPGFSQETLEQAQEQALAWLNNWLAGHDPLD--- 78 (321)
T ss_pred ccceEEEecccccceeeehhhhcccccEEEEEe-eCCcccccccCCCCCcCHHHHHHHHHHHHHHHHHHHccCCccc---
Confidence 568999999999887777778889999999998 5789999999999999999887665443322 23444432221
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecC--CCHHHHHHHHHHHHHcCCCeEE
Q 015289 129 VFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--VSPAEAAELASKYRKQGFTTLK 206 (409)
Q Consensus 129 ~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~--~~~~~~~~~~~~~~~~Gf~~~K 206 (409)
+.+++...++.||+-.+.+-... .|. |...|+ .+|+++......+ .|-+.-|
T Consensus 79 -----------~~~PSVAFGlScA~aEl~~~Lp~-------~~n------Y~~APLC~GDPDeL~~~L~~m--pGeKvAK 132 (321)
T COG1441 79 -----------PQMPSVAFGLSCALAELKGTLPE-------AAN------YRVAPLCTGDPDELYLKLADM--PGEKVAK 132 (321)
T ss_pred -----------ccCchhHHHHHHHHHHHhhhchh-------hcC------cccccCcCCCHHHHHHHHhcC--Ccceeee
Confidence 23466788999998776653211 111 223333 4788887665544 6889999
Q ss_pred EecC-CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHh-CCCCCceeecCCCCCCHHHHHHhHHHhhcc
Q 015289 207 LKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE-MGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284 (409)
Q Consensus 207 iKvG-~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~-~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~ 284 (409)
+||| -...+|=-.+..+-++.||..|++|||.+|++..|.+|++..+. +.-++.|+||||..-+ .-++++ +.
T Consensus 133 vKVGlYEa~RDGmivnllLEaiPDL~LRLDANRaWtp~Ka~~FAkyV~p~~R~RIaFLEEPCkt~a--eSr~Fa----~e 206 (321)
T COG1441 133 VKVGLYEAVRDGMIVNLLLEAIPDLHLRLDANRAWTPLKAQQFAKYVNPDYRSRIAFLEEPCKTRA--ESRAFA----RE 206 (321)
T ss_pred eeeeeeeccccchHHHHHHHhCccceeeecccccCChHHHHHHHHhcCHHHHHHHHHHhcccCChH--HHHHHH----Hh
Confidence 9999 22345666677778889999999999999999999999998764 2224569999998532 234443 47
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccC
Q 015289 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL 361 (409)
Q Consensus 285 ~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~ 361 (409)
++|.||.|||+... ||..--+ -.+..+.+||+.+| +.+..+.++.|+++|+..++++.+||++|....+.+|+-+
T Consensus 207 TgIAIAWDEs~rea-dF~~e~e-~gv~avVIKPTL~GSl~r~~eli~qAh~lGl~AVISSSiESSLGLtQLARiA~~l 282 (321)
T COG1441 207 TGIAIAWDESLREA-DFAFEAE-PGVRAVVIKPTLTGSLQRVRELVQQAHALGLTAVISSSIESSLGLTQLARIAAWL 282 (321)
T ss_pred cCeeEeecchhccc-ccccccC-CCceEEEecccchhhHHHHHHHHHHHHhcCceeEeechhhhhcCHHHHHHHHHHh
Confidence 89999999999874 4543233 34788999999999 8999999999999999999999999999999888888743
No 38
>PF02746 MR_MLE_N: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; InterPro: IPR013341 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonizing enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the N-terminal region of these proteins.; PDB: 2OX4_F 3T9P_A 2QQ6_A 3CYJ_C 3GY1_A 3S47_B 3RRA_B 3RR1_A 3STP_A 3T8Q_A ....
Probab=99.90 E-value=8.4e-23 Score=171.38 Aligned_cols=115 Identities=30% Similarity=0.509 Sum_probs=99.4
Q ss_pred eEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHcCCCCCCHH
Q 015289 49 QRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAMALG 127 (409)
Q Consensus 49 ~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~ 127 (409)
++++++++.+|++ ||++|.++.+.++.++|||+|++|++||||+.+.+. +.+.. ...+.+ +.|.++|+++.+++
T Consensus 2 ~ev~v~~v~~~l~-Pf~~a~~t~~~~~~v~V~l~t~~G~~G~Ge~~~~~~-~~~~~---~~~~~~~l~~~l~g~~~~~~~ 76 (117)
T PF02746_consen 2 IEVRVRHVPLPLK-PFKTARGTVSEREFVLVRLETDDGVVGWGEAFPSPG-TAETV---ASALEDYLAPLLIGQDPDDIE 76 (117)
T ss_dssp EEEEEEEEEEEEE-EEEETTEEEEEEEEEEEEEEETTSEEEEEEEESSSS-SHHHH---HHHHHHTHHHHHTTSBTTGHH
T ss_pred EEEEEEEeccCcC-CEEeeCEEEEEeEEEEEEEEECCCCEEEEEeeCCcc-hhHHH---HHHHHHHHHHHHhcCCHHHHH
Confidence 5788999999999 999999999999999999999999999999998653 33333 233444 78999999999999
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhC
Q 015289 128 SVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG 170 (409)
Q Consensus 128 ~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLG 170 (409)
.+++.+++...++ ..|++||||||||++||.+|+|+|+|||
T Consensus 77 ~~~~~~~~~~~~~--~~a~aaid~AlwDl~gK~~g~Pl~~LlG 117 (117)
T PF02746_consen 77 DIWQELYRLIKGN--PAAKAAIDMALWDLLGKIAGQPLYQLLG 117 (117)
T ss_dssp HHHHHHHHHTSSH--HHHHHHHHHHHHHHHHHHHTSBHHHHTT
T ss_pred HHHHHHHHhccch--HHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 9999998776653 5689999999999999999999999998
No 39
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=99.87 E-value=2.5e-22 Score=166.88 Aligned_cols=106 Identities=25% Similarity=0.390 Sum_probs=96.2
Q ss_pred CCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceeccc
Q 015289 292 DESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLD 370 (409)
Q Consensus 292 dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~ 370 (409)
||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +++++.++++|++++++++.+.|+
T Consensus 1 gE~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~i~~aa~~hlaaa~~~~~~~e~- 78 (111)
T PF13378_consen 1 GESLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESGIGLAASLHLAAALPNCDWLEY- 78 (111)
T ss_dssp STTSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSHHHHHHHHHHHHTSTTBSEEEE-
T ss_pred CCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCcHHHHHHHHHHHhcCCCCcccc-
Confidence 799999999999999999999999999997 99999999999999999999999 999999999999999999988888
Q ss_pred cccccccCCCCC---CeeeeCcEEecCC-CCCcccc
Q 015289 371 TPLLLSEDPVLD---GYEVSGAVYKFTN-ARGHGGF 402 (409)
Q Consensus 371 ~p~~~~~d~~~~---~~~~~~G~i~~p~-~PGlG~~ 402 (409)
|++. +|++.+ ++. +||++.+|+ +||||+|
T Consensus 79 -~~~~-~dl~~~~~~p~~-~~G~v~vp~~~PGlGve 111 (111)
T PF13378_consen 79 -PYFE-EDLVTGPPEPLV-ENGRVTVPDDGPGLGVE 111 (111)
T ss_dssp -GGGT-HHSBSSSSSSEE-ETTEEEGGSSSSBTSBE
T ss_pred -cchh-hhhcCCCCCcee-ECCEEECCCCCCcccCC
Confidence 4433 566653 456 999999999 9999986
No 40
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=99.80 E-value=8.3e-17 Score=155.39 Aligned_cols=296 Identities=23% Similarity=0.318 Sum_probs=204.8
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC--C-------------ccCcccHHHHHHHH
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--P-------------HVTAEDQQTAMVKA 111 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~--~-------------~~~~e~~~~~~~~~ 111 (409)
+|++|..+.+ -.|.| .+++-|+|.|++|..|.+-++.. + .|.+-.+..++..+
T Consensus 3 ~I~~i~aReI--------lDSRG----npTVEveV~~~~g~~g~a~vPSGAStG~~EavElrdgd~ry~gkGV~~AV~nV 70 (423)
T COG0148 3 AIEDVIAREI--------LDSRG----NPTVEVEVTLEDGFGGRAAVPSGASTGEHEAVELRDGDSRYLGKGVLKAVANV 70 (423)
T ss_pred ccceeEEEEE--------EcCCC----CceEEEEEEEcCCCcceeecCCCCCCCCceeEEecCCccccccccHHHHHHHH
Confidence 5777777765 23433 47899999999999998755421 1 12333455677777
Q ss_pred HH-HHHHHcCCCCCCHHHHHHHHHhhc----CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCC-Ceee--eeeeec
Q 015289 112 SE-ACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTIT--TDITIP 183 (409)
Q Consensus 112 ~~-~~~~l~g~~~~~~~~~~~~~~~~~----~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~-~~i~--~~~~i~ 183 (409)
++ +.|.|+|.+..+...+.+.|.+.- .++..+.++-|++||.--+.|..+|+|||++|||.. ..+| +...+.
T Consensus 71 n~~Iap~LiG~da~dQ~~ID~~lielDGT~Nks~lGaNailgVSlAvAkAAA~~l~~PLy~YlGG~~a~~lPvPm~Nvin 150 (423)
T COG0148 71 NEIIAPALIGLDATDQALIDSLLIELDGTENKSKLGANAILGVSLAVAKAAAASLGIPLYRYLGGLNALVLPVPMMNVIN 150 (423)
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHccCCCcccccccHHHHHHHHHHHHHHHHhcCCcHHHHhcCccccccccceeeeec
Confidence 65 689999999999888887775531 122235688999999999999999999999999974 3344 333222
Q ss_pred C--------------------CCHHHHH-------HHHHHH-HHcCCCeEEEecC------CChh---HHHHH-HHHHHh
Q 015289 184 I--------------------VSPAEAA-------ELASKY-RKQGFTTLKLKVG------KNLK---EDIEV-LRAIRA 225 (409)
Q Consensus 184 ~--------------------~~~~~~~-------~~~~~~-~~~Gf~~~KiKvG------~~~~---~d~~~-l~avr~ 225 (409)
. .+..+.. ...+++ .++|..+- +| ++++ +-++. ++++.+
T Consensus 151 GG~HA~n~~d~QEFmI~p~ga~sf~ealr~~~ev~h~lk~~l~~~g~~t~---vGDEGgfAP~l~~~eeald~i~~Aie~ 227 (423)
T COG0148 151 GGAHADNNLDIQEFMIMPVGAESFKEALRAGAEVFHHLKKLLKEKGLSTG---VGDEGGFAPNLKSNEEALDILVEAIEE 227 (423)
T ss_pred ccccCCCCccceeEEEeecChHHHHHHHHHHHHHHHHHHHHHhhcCcccc---ccCCcccCCCCCccHHHHHHHHHHHHH
Confidence 1 0111111 111111 22344333 33 3444 33343 456667
Q ss_pred hC--C--CcEEEEeCCC--------------CCCHHHHHHHHHHH-HhCCCCCceeecCCCCCCHHHHHHhHHHhhccCC
Q 015289 226 VH--P--DSSFILDANE--------------GYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286 (409)
Q Consensus 226 ~~--~--~~~l~vDaN~--------------~w~~~~A~~~~~~L-~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ 286 (409)
++ + ++.+.+|+.. .++.++-++++..| ++|++ ..||+|+..+||+++++|.+.+. -.
T Consensus 228 agy~~g~~i~~alD~Aasefy~~~~Y~~~~~~~~~~e~i~~~~~Lv~~Ypi--vsiEDpl~E~Dweg~~~lt~~~g--~k 303 (423)
T COG0148 228 AGYEPGEDIALALDVAASEFYKDGKYVLEGESLTSEELIEYYLELVKKYPI--VSIEDPLSEDDWEGFAELTKRLG--DK 303 (423)
T ss_pred hCCCCCcceeeeehhhhhhhccCCeeeecCcccCHHHHHHHHHHHHHhCCE--EEEcCCCCchhHHHHHHHHHhhC--Ce
Confidence 64 3 4788899732 34556767766555 67874 58999999999999999987321 12
Q ss_pred CeEEeCCC-CCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccC-CchHHHHHHHHHHHccCCC
Q 015289 287 VSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGM-VETRLAMGFAGHLSAGLGC 363 (409)
Q Consensus 287 ipIa~dEs-~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~-~es~i~~~~~~hlaaa~~~ 363 (409)
+.|+.|.- ++++.-+++-++.++++.+.+|+.++| +|+++..+.+|+++|+..++++. .||.= ...+|||.++.+
T Consensus 304 vqivGDDLfvTN~~~l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~gy~~viSHRSGETeD--~tIAdLAVa~~a 381 (423)
T COG0148 304 VQIVGDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAGYTAVISHRSGETED--TTIADLAVATNA 381 (423)
T ss_pred EEEECCcceecCHHHHHHHHHhccCceEEEechhcccHHHHHHHHHHHHHCCCeEEEecCCCCccc--chHHHHHHHhCC
Confidence 67888774 888899999999999999999999999 99999999999999999998764 35443 345688877754
No 41
>PRK08350 hypothetical protein; Provisional
Probab=99.78 E-value=4.4e-17 Score=155.94 Aligned_cols=281 Identities=15% Similarity=0.171 Sum_probs=197.7
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCC---ccCcccHHHHHHHHHH-HHHHHcCCC
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP---HVTAEDQQTAMVKASE-ACEVLKESP 122 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~---~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (409)
+|++|..+.+ -.|+| .+++-|+|+|++| .|.+-++... .|. -.+..++..+++ +.|.|+|.+
T Consensus 3 ~I~~i~aReI--------lDSRG----nPTVEveV~~~~g-~gra~vPSD~d~~ry~-~gV~~AV~nVn~~Iap~LiG~d 68 (341)
T PRK08350 3 VIENIIGRVA--------VLRGG----KYSVEVDVITDSG-FGRFAAPIDENPSLYI-AEAHRAVSEVDEIIGPELIGFD 68 (341)
T ss_pred eeEEEEEEEE--------EcCCC----CceEEEEEEECCc-EEEEEecCCCCccccc-chHHHHHHHHHHHHHHHHcCCC
Confidence 7888888775 24444 4789999999999 7877776521 233 345567777765 789999999
Q ss_pred CCCHHHHHHHHHhhc----CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeee--eeeecCCC------HHH
Q 015289 123 AMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITT--DITIPIVS------PAE 189 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~----~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~--~~~i~~~~------~~~ 189 (409)
+.+...+.+.|-+.- .+...+.++-|+.||..-+.|..+|+|||++|||. ...+|+ ...+...+ |.+
T Consensus 69 ~~dQ~~ID~~mielDGT~nKs~lGaNAiLavS~A~akAaA~~~~~PLy~ylgg~~~~~lPvP~~NiiNGG~~EFmI~p~e 148 (341)
T PRK08350 69 ASEQELIDSYLWEIDGTEDFSHIGANTALAVSVAVAKAAANSKNMPLYSYIGGTFTTELPVPILEFAEDENFEYYVLVRD 148 (341)
T ss_pred HHHHHHHHHHHHhccCCccccccCchhhHHHHHHHHHHHHHHcCCcHHHHhcCCCCCccCccceeeecCCceEEEECchH
Confidence 999888888775421 11122457899999999999999999999999884 344444 32332211 222
Q ss_pred HHHHHHHHHHcCCCeEEEecCCChhHHHHH-HHHHHhhC--C--CcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeec
Q 015289 190 AAELASKYRKQGFTTLKLKVGKNLKEDIEV-LRAIRAVH--P--DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 264 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~-l~avr~~~--~--~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEe 264 (409)
..+- .+-|+.+|=-+-.+.++-++. ++++.++| + |+.+.+|+...+|.++.+ +.+++|++ .+||
T Consensus 149 a~~~-----~ev~~~lk~il~~~~eeaL~ll~eAi~~aGy~~g~dv~~~lD~~~~~t~~eli---~l~~kYPI--vsIE- 217 (341)
T PRK08350 149 LMEI-----TDVVDAVNKILENSKEVSLEGLSKASEKAGDELGLEVALGIAQKREMETEKVL---NLVEDNNI--AYIK- 217 (341)
T ss_pred hhhh-----HHHHHHHHHHHhhChHHHHHHHHHHHHHhCCCccccEEEeeccCCCCCHHHHH---HHHHHCCE--EEEE-
Confidence 2221 122333431111144555665 46777774 2 588999997558888765 77889986 6999
Q ss_pred CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEcc
Q 015289 265 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG 343 (409)
Q Consensus 265 P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~ 343 (409)
|+..+ ++++++++. ...+.|..|.-..+-... +.++++.+.+|+.++| ++++++.+.+|+++|+.+++++
T Consensus 218 p~~E~--~gw~~lt~~---g~~iqiVGDDLfvTN~~~----~~~~~NaiLiK~NQIGTltEt~~ai~~A~~~g~~~vvSH 288 (341)
T PRK08350 218 PIGDE--ELFLELIAG---THGVFIDGEYLFRTRNIL----DRRYYNALSIKPINLGTLTDLYNLVNDVKSERITPILAE 288 (341)
T ss_pred cCCcc--hHHHHHHhc---CCceEEEcccccccChhH----hhCccceEEEeeccceeHHHHHHHHHHHHHcCCeEEeec
Confidence 99965 999999862 245889988864444332 8899999999999999 9999999999999999998866
Q ss_pred C-CchHHHHHHHHHHHccCCC
Q 015289 344 M-VETRLAMGFAGHLSAGLGC 363 (409)
Q Consensus 344 ~-~es~i~~~~~~hlaaa~~~ 363 (409)
. -||. -.+.+|||.++++
T Consensus 289 RSGETe--D~~IAdLaVa~~a 307 (341)
T PRK08350 289 AKYESA--DEALPHLAVGLRC 307 (341)
T ss_pred CCCCCc--chhHHHHHHHhCC
Confidence 4 3554 3466788887754
No 42
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=99.66 E-value=3.9e-16 Score=117.58 Aligned_cols=66 Identities=32% Similarity=0.582 Sum_probs=60.7
Q ss_pred HHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeC
Q 015289 219 VLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 292 (409)
Q Consensus 219 ~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~d 292 (409)
||+++|+. ||++.|++|+|++||.++|+++++.|+++ .|||||++++|++++++|++ ++++||++|
T Consensus 1 ri~avr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~----~~iEeP~~~~d~~~~~~l~~----~~~~pia~d 67 (67)
T PF01188_consen 1 RIRAVREAVGPDIDLMVDANQAWTLEEAIRLARALEDY----EWIEEPLPPDDLDGLAELRQ----QTSVPIAAD 67 (67)
T ss_dssp HHHHHHHHHSTTSEEEEE-TTBBSHHHHHHHHHHHGGG----SEEESSSSTTSHHHHHHHHH----HCSSEEEES
T ss_pred CHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHcChh----heeecCCCCCCHHHHHHHHH----hCCCCEEeC
Confidence 68999998 99999999999999999999999999995 39999999999999999975 689999987
No 43
>PTZ00378 hypothetical protein; Provisional
Probab=99.65 E-value=6.6e-14 Score=141.22 Aligned_cols=296 Identities=17% Similarity=0.173 Sum_probs=195.8
Q ss_pred eeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCce-----EEEEeccCC------cc-CcccHHHHHHHH
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCV-----GWGEAPVLP------HV-TAEDQQTAMVKA 111 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~-----G~GE~~~~~------~~-~~e~~~~~~~~~ 111 (409)
..+.|++|..+.+- .|.| .+++-|+|++++|.. -.||+..+. +| .+..+..++.
T Consensus 47 ~~~~I~~i~areIl--------DSrG----nPTVev~v~l~~G~~vPSGAStGEA~elRDgd~~~~~g~gkgV~~Av~-- 112 (518)
T PTZ00378 47 SGDEIRALVHNEVL--------SPAG----ETVLRFTLELLNGMEVSSGALLSPSHGERDGEADATLDPAEYTTEALQ-- 112 (518)
T ss_pred CCCeeeEEEEEEEE--------cCCC----CeeEEEEEEECCCCEECCCCcccceeeeecCCcccccCCCccHHHHHH--
Confidence 34668999888762 3333 467888899998843 011444221 12 2233334443
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHhhc----CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC--------CCeeeee
Q 015289 112 SEACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV--------SNTITTD 179 (409)
Q Consensus 112 ~~~~~~l~g~~~~~~~~~~~~~~~~~----~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~--------~~~i~~~ 179 (409)
+.+.|.|+|.++.+...+.+.|.+.- ..+..+.++-|+.||+.-+.|+..++|||++|++. ...+|+.
T Consensus 113 ~~i~p~Lig~~~~dQ~~iD~~Li~lDGT~nks~lGaNailavS~A~akAAA~~~~~PLy~yL~~~~~~~~~~~~~~lP~P 192 (518)
T PTZ00378 113 NSYFPRLLQLGARDQREFDSTLRAALSTSPLANVGSAVQWALSIVASLAAARCRSVPLFQYLRALFGSLTSVETFSMPQL 192 (518)
T ss_pred hhhHHHHcCCChHhHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHhhccccccccCCCcccCcc
Confidence 45889999999999888877775432 12223568999999999999999999999999873 1234432
Q ss_pred --eee------------------cC----CCHHHHHHHHH---HHHHcCCCeEEEecC-------C---ChhHHHHH-HH
Q 015289 180 --ITI------------------PI----VSPAEAAELAS---KYRKQGFTTLKLKVG-------K---NLKEDIEV-LR 221 (409)
Q Consensus 180 --~~i------------------~~----~~~~~~~~~~~---~~~~~Gf~~~KiKvG-------~---~~~~d~~~-l~ 221 (409)
..+ |. .+..+..+... ..+..|+. .-+| + +.++-++. .+
T Consensus 193 ~~NiinGG~HA~n~l~iQEFmI~P~ga~g~s~~ealr~~~evyh~L~~~~~---t~vGDEGGfaap~~~~~eeAL~li~e 269 (518)
T PTZ00378 193 CITFFGPGNPSTARLALKSVLFSPVMPSGTVLRERMQKIFAAFHHFCQSHN---SSVRSDGSLHWDGFANLTDAVKLATE 269 (518)
T ss_pred ceEeecCccCCCCCCCceEEEEeeCCCCCCCHHHHHHHHHHHHHHHhhccc---CccCCCcCcCCCCCCCHHHHHHHHHH
Confidence 111 11 12222222111 11112321 1222 1 23344454 35
Q ss_pred HHHhhC--C--CcEEEEeCC--CC--------------------------------CCHHHHHHHHHH-HHhCC--CCCc
Q 015289 222 AIRAVH--P--DSSFILDAN--EG--------------------------------YKPQEAVEVLEK-LYEMG--VTPV 260 (409)
Q Consensus 222 avr~~~--~--~~~l~vDaN--~~--------------------------------w~~~~A~~~~~~-L~~~~--l~~~ 260 (409)
+|++++ | ++.|.+|+- +- .|.+|.+++.+. +++|+ + .
T Consensus 270 Ai~~aGy~pG~dI~iglD~AASef~~~~~~~~~~~~y~~~k~~~e~~Y~l~~~~~~~t~~elieyy~~li~kYP~iI--v 347 (518)
T PTZ00378 270 ALRAVQLTPGTDVCLGLRMAASTTRVPATAVADGGAWKEAKDDCEVLYSLFPGEPDVTGDQLSEYVREQLQAVPDIV--V 347 (518)
T ss_pred HHHHhCCCCCCeEEEEEecccccccccccccccchhhccccCCCceeeeecCCCCCCCHHHHHHHHHHHHHHCCCce--E
Confidence 667764 3 477777742 11 346777777665 46786 4 5
Q ss_pred eeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCC-CC-CHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCC
Q 015289 261 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES-CR-SLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGL 337 (409)
Q Consensus 261 ~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs-~~-~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi 337 (409)
+||+|+..+||+++++|++.+. -.+.|..|.- ++ ++.-+++.++.+.++.+.+|++++| ++++++.+.+|+++|.
T Consensus 348 sIEDp~~E~D~~gw~~lt~~lG--~~iqivGDDL~vT~n~~ri~~gi~~~~~NaiLIK~NQIGTlSEtieav~lA~~~g~ 425 (518)
T PTZ00378 348 YVEDTHCDEDTFGLQRLQAALG--DSIVLSGVDVYARSEYKKVESGLRGLWTSNIVLNPCAIGTLSDVVEIVRAVGEDEG 425 (518)
T ss_pred EEecCCCchHHHHHHHHHHHhC--CeEEEECCCcCcCCCHHHHHHHHhcCCCceEEEccccceeHHHHHHHHHHHHHcCC
Confidence 8999999999999999997542 2478888865 55 5889999999999999999999999 9999999999999999
Q ss_pred cEE---EccCCchHHHHHHHHHHHccCCC
Q 015289 338 NLM---IGGMVETRLAMGFAGHLSAGLGC 363 (409)
Q Consensus 338 ~~~---~~~~~es~i~~~~~~hlaaa~~~ 363 (409)
.++ +++. |+ .-...+|||.+++.
T Consensus 426 ~~v~v~vShR--SG-eD~~IAdLAVa~ga 451 (518)
T PTZ00378 426 RAVTVLVQTL--AG-NAATAAHLAVAMGA 451 (518)
T ss_pred cEEccccCCC--cC-CccHHHHHHHHcCC
Confidence 997 6553 23 45677889888753
No 44
>COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=99.57 E-value=1.6e-13 Score=127.43 Aligned_cols=285 Identities=17% Similarity=0.217 Sum_probs=191.5
Q ss_pred eeEEEEEEEECCCceEEEEeccCCccCcc----cH---HHHHHHHH-HHHHHHcCCCCCCHHHHHHHHHhhcCCChh-hH
Q 015289 74 VENVAIRIELSNGCVGWGEAPVLPHVTAE----DQ---QTAMVKAS-EACEVLKESPAMALGSVFGVVAGLLPGHQF-AS 144 (409)
Q Consensus 74 ~~~~iVrl~td~G~~G~GE~~~~~~~~~e----~~---~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~g~~~-~~ 144 (409)
.+++-|.+..++|.+-||.|...- |++. .+ +.....++ .+.|+|+|++....-+....+.....++.+ .+
T Consensus 50 ge~lsv~lvLsdg~vv~GdcaaVQ-YSGAGgRDpLF~a~~~~~~~~~~v~p~LvgrDv~~~ldnA~vfe~l~d~~~LhtA 128 (410)
T COG3799 50 GECLSVQLVLSDGAVVVGDCAAVQ-YSGAGGRDPLFLAEHFIPFLNDHVKPLLVGRDVDAFLDNARVFEKLIDGNLLHTA 128 (410)
T ss_pred cceeeEEEEEecCceeeccceeeE-ecCCCCCCchhhhhhhHHHHhhhhhhhhhCccHHhhcchhHHhHhhccCCcchHH
Confidence 468888999999999999987532 1111 11 12222333 368999999876544333222223333332 45
Q ss_pred HHHHHHHHHHHHHHhhcCCchHHHhCCC------CCeeeeeeeecCC---CHHHHHHHHH---------HHHHcCCCeEE
Q 015289 145 VRAAVEMALIDAVAKSVSMPLWRLFGGV------SNTITTDITIPIV---SPAEAAELAS---------KYRKQGFTTLK 206 (409)
Q Consensus 145 a~said~AlwDl~gk~~g~Pl~~LLGg~------~~~i~~~~~i~~~---~~~~~~~~~~---------~~~~~Gf~~~K 206 (409)
.+.++..||.|+.+...+.--.+.+-.. ..+||+|...+.. ..+.|.-..- ...+-||...|
T Consensus 129 vrYGvSQALl~Aaa~a~~tt~tevvcde~~lp~~te~vP~fgQSGd~R~~~vdkMiLK~vdVLPHgLiNsve~~G~dG~~ 208 (410)
T COG3799 129 VRYGVSQALLDAAALATGTTKTEVVCDEWQLPRVTESVPLFGQSGDDRYIAVDKMILKGVDVLPHGLINSVEELGFDGEK 208 (410)
T ss_pred HHhhHHHHHHHHHHHhhccchheeehhhhCCCCccccccccccCcchhhhhHHHHHHhhcCccchhhhhhHHHhCCchHH
Confidence 7899999999999888776655544322 2356766543321 1122211111 11123343333
Q ss_pred EecCCChhHHHHHHHHHHhhCCCcEEEEeCCC------CCCHHHHHHHHHHHHhC--CCCCceeecCCCC----CCHHHH
Q 015289 207 LKVGKNLKEDIEVLRAIRAVHPDSSFILDANE------GYKPQEAVEVLEKLYEM--GVTPVLFEQPVHR----DDWEGL 274 (409)
Q Consensus 207 iKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~------~w~~~~A~~~~~~L~~~--~l~~~~iEeP~~~----~d~~~~ 274 (409)
+.- -++|-.+|...++.-+..-.|-+|..+ ++++.....++..|++. ++ +++||-|+.. .+++.|
T Consensus 209 l~E--yv~Wls~R~~~~g~~gYhP~lH~DVYG~iGe~fg~dp~r~a~yi~~l~~~a~~~-pL~IEgP~DaGs~~aQI~~~ 285 (410)
T COG3799 209 LRE--YVRWLSDRILSKGTSGYHPTLHIDVYGTIGEIFGMDPLRCAQYIASLEKEAQGL-PLYIEGPVDAGSKPAQIRLL 285 (410)
T ss_pred HHH--HHHHHHHHHHhcCCCCCCccEEEeehhhhHHHhCCCHHHHHHHHHHHHhhCCCC-ceeeeccccCCCCHHHHHHH
Confidence 221 123444444443333444578899876 36777777888888753 44 5699999984 457778
Q ss_pred HHhHHHh-hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEcc-CCchHHHH
Q 015289 275 GHVSHIA-KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG-MVETRLAM 351 (409)
Q Consensus 275 ~~l~~~~-~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~-~~es~i~~ 351 (409)
+++.+.+ +..+++.|..||.|.+.+|+..+.++++++.+|+|..-+| +.+..+.+.+|+.+.+....|+ +.||.++.
T Consensus 286 a~i~~~L~~~Gs~v~IVaDEwCnt~~Di~~F~dA~a~h~VQiKTPDvGsi~~~~rAvlyC~~~~~~AYvGGtCnETdvSA 365 (410)
T COG3799 286 AAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAAACHMVQIKTPDVGSIHNIVRAVLYCNSHSMEAYVGGTCNETDVSA 365 (410)
T ss_pred HHHHHHHhhcCCcceEeehhhcccHHHHHHHHhhccccEEEecCCCcchHHHHHHHHhhhccCccceeecccccccchhh
Confidence 8877755 4567899999999999999999999999999999999999 9999999999999999988866 57999999
Q ss_pred HHHHHHHccCC
Q 015289 352 GFAGHLSAGLG 362 (409)
Q Consensus 352 ~~~~hlaaa~~ 362 (409)
..++|++.+..
T Consensus 366 r~cvHValAt~ 376 (410)
T COG3799 366 RTCVHVALATR 376 (410)
T ss_pred hhhhhhhhhhc
Confidence 99999987653
No 45
>KOG2670 consensus Enolase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=8.3e-12 Score=117.48 Aligned_cols=280 Identities=18% Similarity=0.260 Sum_probs=183.3
Q ss_pred eeEEEEEEEECCCce----------EEEEeccC-----CccCcccHHHHHHHHHH-HHHHHcCC--CCCCHHHHHHHHHh
Q 015289 74 VENVAIRIELSNGCV----------GWGEAPVL-----PHVTAEDQQTAMVKASE-ACEVLKES--PAMALGSVFGVVAG 135 (409)
Q Consensus 74 ~~~~iVrl~td~G~~----------G~GE~~~~-----~~~~~e~~~~~~~~~~~-~~~~l~g~--~~~~~~~~~~~~~~ 135 (409)
.+++-|.++|+.|+. |.=|+-.+ ..|.+..+..++..+++ +.|.+++. ++.+...+.+.|..
T Consensus 17 nPTVEVdL~T~~G~fRaavPSGAStGi~EAlELrDgdK~~y~GkgV~kaV~niN~~i~pali~~~~dv~~Q~~iD~~mi~ 96 (433)
T KOG2670|consen 17 NPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSKYMGKGVLKAVGNINNTIAPALIKKNLDVTDQKAIDNFMIE 96 (433)
T ss_pred CCceeEEEEecCcceEeecCCCCccchhhhhheecCCcceecchhHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHHHh
Confidence 478899999998832 33333211 12444556666666765 68999987 66666777666653
Q ss_pred hc----CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCC---CCC--eeee--eeeecCC-------------------
Q 015289 136 LL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG---VSN--TITT--DITIPIV------------------- 185 (409)
Q Consensus 136 ~~----~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg---~~~--~i~~--~~~i~~~------------------- 185 (409)
.- .+...+.|+-|+.+|..-+-|-..|+|||+.+.+ ..+ -+|+ ...+...
T Consensus 97 LDGTeNKsklGaNaIlgvSlavckagAa~k~vplykhia~lag~~~~~vlPVPaFNVlNGGsHAGn~lAmQEfMIlP~ga 176 (433)
T KOG2670|consen 97 LDGTENKSKLGANAILGVSLAVCKAGAAEKGVPLYKHIADLAGNKQPYVLPVPAFNVLNGGSHAGNKLAMQEFMILPVGA 176 (433)
T ss_pred ccCCcccccccchhhHHHHHHHHhhhhhhcCCcHHHHHHHhcCCCCceEecccceeeecCCccccchhhhhhheecccCc
Confidence 21 1111256899999999999999999999988753 232 2343 3222111
Q ss_pred -CHHHHHH-------HHHHHHHcCCCeEEEecC------CCh---hHHHHHH-HHHHhhC--CCcEEEEeCCC-------
Q 015289 186 -SPAEAAE-------LASKYRKQGFTTLKLKVG------KNL---KEDIEVL-RAIRAVH--PDSSFILDANE------- 238 (409)
Q Consensus 186 -~~~~~~~-------~~~~~~~~Gf~~~KiKvG------~~~---~~d~~~l-~avr~~~--~~~~l~vDaN~------- 238 (409)
+.++..+ -.+...+.-|..---.|| +++ ++-++.+ .+++.++ .++.|-+|...
T Consensus 177 ~sf~eamr~GsevYh~LK~vik~kyG~~a~nVGDEGGfAPnI~~~~E~L~Li~~Ai~kagyt~kikIgmDvAaseF~~dg 256 (433)
T KOG2670|consen 177 DSFAEAMRMGSEVYHHLKSVIKEKYGADATNVGDEGGFAPNIQTNEEALDLIKEAINKAGYTGKVKIGMDVAASEFYKDG 256 (433)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHhCccccccccccCcCCCccchHHHHHHHHHHHHhcCCCCceEEEEeechhhhhcCC
Confidence 1111111 111112222222222344 333 3444443 4666664 46888888522
Q ss_pred C---------------CCHHHHHHHH-HHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCC-CCCCHHHH
Q 015289 239 G---------------YKPQEAVEVL-EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDV 301 (409)
Q Consensus 239 ~---------------w~~~~A~~~~-~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE-s~~~~~~~ 301 (409)
. ++.++..++. .-+++|.+ .-||+|+..|||+.+..+.. ..++.|..|. .++++..+
T Consensus 257 kYDLdfk~~~~d~s~~~s~~~L~dlY~~~~k~yPi--vSiEDPFdqdDw~~w~~~~~----~~~iqiVgDDLtvTnpkri 330 (433)
T KOG2670|consen 257 KYDLDFKSPNSDPSRWLSGDQLADLYKSFIKDYPI--VSIEDPFDQDDWEAWSKFFK----EVGIQIVGDDLTVTNPKRI 330 (433)
T ss_pred cccccCcCCCCCcccccCHHHHHHHHHHHHhcCCe--eeecCCcchhhHHHHHHHhh----ccceEEecCcccccCHHHH
Confidence 1 3556655544 44678875 59999999999999999864 4789998876 68999999
Q ss_pred HHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccC-CchHHHHHHHHHHHccC
Q 015289 302 KKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGM-VETRLAMGFAGHLSAGL 361 (409)
Q Consensus 302 ~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~-~es~i~~~~~~hlaaa~ 361 (409)
++.++..+|+.+.+|+.++| ++++++.+.+|++.|..+|+++. -||.= .+.++|..++
T Consensus 331 ~~Ai~~k~cN~LLlKvNQIGtvtEsiea~~~a~~~gwgvmvSHRSGETeD--tFIaDL~VGl 390 (433)
T KOG2670|consen 331 ATAIEEKACNALLLKVNQIGTVTESIEAAKLARSAGWGVMVSHRSGETED--TFIADLVVGL 390 (433)
T ss_pred HHHHHHhhccceEeeccccccHHHHHHHHHHHHhcCceEEEeccCCCccc--chHHHhhhhh
Confidence 99999999999999999999 99999999999999999998764 34432 2445565554
No 46
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=99.34 E-value=2.6e-11 Score=109.10 Aligned_cols=161 Identities=20% Similarity=0.371 Sum_probs=108.8
Q ss_pred cC-CCeEEEecCCChhHHHHHHHHH----HhhC-C--CcEEEEeCCCCC------CHHHHHHHHHHHHhC--CCCCceee
Q 015289 200 QG-FTTLKLKVGKNLKEDIEVLRAI----RAVH-P--DSSFILDANEGY------KPQEAVEVLEKLYEM--GVTPVLFE 263 (409)
Q Consensus 200 ~G-f~~~KiKvG~~~~~d~~~l~av----r~~~-~--~~~l~vDaN~~w------~~~~A~~~~~~L~~~--~l~~~~iE 263 (409)
.| |..++ |+|.+-+.-.+.++-+ ++.+ + .-.|.+|..+.. +++....++..|++. ++ ...||
T Consensus 33 H~linnve-klG~~Ge~L~eYv~Wl~~Ri~~lg~~~Y~P~lHiDVYGtiG~~f~~d~~~~adYl~~l~~aA~P~-~L~iE 110 (248)
T PF07476_consen 33 HALINNVE-KLGPDGEKLLEYVKWLKDRIRELGDEDYRPVLHIDVYGTIGLAFDNDPDRMADYLAELEEAAAPF-KLRIE 110 (248)
T ss_dssp ETT---CC-CC-TTSHHHHHHHHHHHHHHHHHSSTT---EEEEE-TTHHHHHTTT-HHHHHHHHHHHHHHHTTS--EEEE
T ss_pred hHhhhCHH-HhCcchHHHHHHHHHHHHHHHHhcCCCCCccEEEEccchHHHHhCCCHHHHHHHHHHHHHhcCCC-eeeee
Confidence 45 78888 9996544444433322 3333 3 357899998742 577777788888752 33 25999
Q ss_pred cCCCCCC----HHHHHHhHHHh-hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCC
Q 015289 264 QPVHRDD----WEGLGHVSHIA-KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGL 337 (409)
Q Consensus 264 eP~~~~d----~~~~~~l~~~~-~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi 337 (409)
.|+...+ ++.+++|++.+ ++.+++.|.+||.|.+++|++.+.+++++|.+|+|..-+| +..+.+.+-+|+++|+
T Consensus 111 gP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~dmVQIKtPDLGgi~ntieAvlyCk~~gv 190 (248)
T PF07476_consen 111 GPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAADMVQIKTPDLGGINNTIEAVLYCKEHGV 190 (248)
T ss_dssp -SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SSEEEE-GGGGSSTHHHHHHHHHHHHTT-
T ss_pred CCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcCEEEecCCCccchhhHHHHHHHHHhcCC
Confidence 9998654 67788887755 3567799999999999999999999999999999999998 9999999999999999
Q ss_pred cEEEcc-CCchHHHHHHHHHHHccCC
Q 015289 338 NLMIGG-MVETRLAMGFAGHLSAGLG 362 (409)
Q Consensus 338 ~~~~~~-~~es~i~~~~~~hlaaa~~ 362 (409)
....|+ +.||..+...++|+|.|..
T Consensus 191 gaY~GGtCNETd~SArv~~hvalAt~ 216 (248)
T PF07476_consen 191 GAYLGGTCNETDRSARVCVHVALATR 216 (248)
T ss_dssp EEEE---TTS-HHHHHHHHHHHHHCT
T ss_pred ceeecccccccchhHHHHHHHHHhcC
Confidence 999876 5799999999999998765
No 47
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.08 E-value=2e-09 Score=106.64 Aligned_cols=121 Identities=22% Similarity=0.369 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHcCCCeEEEecCC------------ChhH-------------HHHHHHHHHhh-CCCcEEEEeCC-----
Q 015289 189 EAAELASKYRKQGFTTLKLKVGK------------NLKE-------------DIEVLRAIRAV-HPDSSFILDAN----- 237 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf~~~KiKvG~------------~~~~-------------d~~~l~avr~~-~~~~~l~vDaN----- 237 (409)
++++.++++++.||..|+|+.+. +... ..+.+++||+. ++++.|.+|.|
T Consensus 155 ~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~ 234 (336)
T cd02932 155 AFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWV 234 (336)
T ss_pred HHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccC
Confidence 34666777888999999999752 2223 38999999997 78999999955
Q ss_pred -CCCCHHHHHHHHHHHHhCCCCCceee-----------cCC-CCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHH
Q 015289 238 -EGYKPQEAVEVLEKLYEMGVTPVLFE-----------QPV-HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304 (409)
Q Consensus 238 -~~w~~~~A~~~~~~L~~~~l~~~~iE-----------eP~-~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~ 304 (409)
++|+.++++++++.|+++++. ||| .|+ +.++.+.++++++ .+++||++++.+.+++++.++
T Consensus 235 ~~g~~~~e~~~ia~~Le~~gvd--~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~G~i~t~~~a~~~ 308 (336)
T cd02932 235 EGGWDLEDSVELAKALKELGVD--LIDVSSGGNSPAQKIPVGPGYQVPFAERIRQ----EAGIPVIAVGLITDPEQAEAI 308 (336)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--EEEECCCCCCcccccCCCccccHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHH
Confidence 889999999999999999874 999 466 3445666666654 678999999999999999999
Q ss_pred HHcCCCCEEEe
Q 015289 305 VKGNLADVINI 315 (409)
Q Consensus 305 i~~~a~div~~ 315 (409)
++.+.+|+|++
T Consensus 309 l~~g~aD~V~~ 319 (336)
T cd02932 309 LESGRADLVAL 319 (336)
T ss_pred HHcCCCCeehh
Confidence 99999999854
No 48
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.07 E-value=5.6e-09 Score=97.65 Aligned_cols=143 Identities=21% Similarity=0.306 Sum_probs=118.8
Q ss_pred HHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC----------------ChhHHHHHHHHHHhhCCC
Q 015289 166 WRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPD 229 (409)
Q Consensus 166 ~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~d~~~l~avr~~~~~ 229 (409)
..+++......|+..++...+++++.+.++.+.+.||..+++++|. +++...+.++++|+..+
T Consensus 45 ~~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~- 123 (231)
T cd02801 45 LRLLTRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP- 123 (231)
T ss_pred HHhhccCccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-
Confidence 3445545567788888888899999998888888899999999873 56677888999998744
Q ss_pred cEEEEeCCCCCCHH-HHHHHHHHHHhCCCCCcee-------ec-CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHH
Q 015289 230 SSFILDANEGYKPQ-EAVEVLEKLYEMGVTPVLF-------EQ-PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 300 (409)
Q Consensus 230 ~~l~vDaN~~w~~~-~A~~~~~~L~~~~l~~~~i-------Ee-P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~ 300 (409)
..+.++.|.+|+.+ ++.++++.+++.++. +| ++ +..+.+++.++++++ ..++||.++..+.+.++
T Consensus 124 ~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd--~i~v~~~~~~~~~~~~~~~~~~~~i~~----~~~ipvi~~Ggi~~~~d 197 (231)
T cd02801 124 IPVTVKIRLGWDDEEETLELAKALEDAGAS--ALTVHGRTREQRYSGPADWDYIAEIKE----AVSIPVIANGDIFSLED 197 (231)
T ss_pred CCEEEEEeeccCCchHHHHHHHHHHHhCCC--EEEECCCCHHHcCCCCCCHHHHHHHHh----CCCCeEEEeCCCCCHHH
Confidence 77899999999876 889999999999875 78 76 666668887777754 67899999999999999
Q ss_pred HHHHHHcCCCCEEEe
Q 015289 301 VKKIVKGNLADVINI 315 (409)
Q Consensus 301 ~~~~i~~~a~div~~ 315 (409)
+.++++.+.+|.+++
T Consensus 198 ~~~~l~~~gad~V~i 212 (231)
T cd02801 198 ALRCLEQTGVDGVMI 212 (231)
T ss_pred HHHHHHhcCCCEEEE
Confidence 999999877899876
No 49
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=99.06 E-value=1.4e-09 Score=104.59 Aligned_cols=165 Identities=20% Similarity=0.399 Sum_probs=108.5
Q ss_pred CCCHHHHHHHHHHH-HHcCCCeEEEecCCChhHHHHHHHHHHhhC--CCcEEEEeCCC-------CCCHHHHHHHHHH-H
Q 015289 184 IVSPAEAAELASKY-RKQGFTTLKLKVGKNLKEDIEVLRAIRAVH--PDSSFILDANE-------GYKPQEAVEVLEK-L 252 (409)
Q Consensus 184 ~~~~~~~~~~~~~~-~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~--~~~~l~vDaN~-------~w~~~~A~~~~~~-L 252 (409)
+.++++..+.+.++ .+.||.. +++++-|.... +.+ .+-+..++... ..|.++.+++... +
T Consensus 76 ~~~~eeaL~ll~~Ai~~aGy~~-~v~ialD~AAs--------efyd~~~gkY~~~~~~~~~~~~~~~s~delid~y~~li 146 (295)
T PF00113_consen 76 IDDNEEALDLLMEAIKEAGYEP-DVAIALDVAAS--------EFYDEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKDLI 146 (295)
T ss_dssp BSSHHHHHHHHHHHHHHTT-TT-TBEEEEE--GG--------GGEETETTEEETTTTSSSSTGGGEEEHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHccccc-eeeeeccccHH--------HhhhccCCeEEEeecccccccccccCHHHHHHHHHHHH
Confidence 45666666655444 3468776 77766433211 112 12233333322 3678888887555 5
Q ss_pred HhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHH
Q 015289 253 YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIE 330 (409)
Q Consensus 253 ~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE-s~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~ 330 (409)
++|++ ..||+|+..+||+++++|++.+.. .+-|..|. .++++..+++.++.++++.+.+|+.++| ++++++++.
T Consensus 147 ~~YPI--vsIEDpf~edD~e~w~~lt~~~g~--~~~iVGDDl~vTn~~ri~~~i~~~~~na~llK~NQigTvte~lea~~ 222 (295)
T PF00113_consen 147 KKYPI--VSIEDPFDEDDWEGWAKLTKRLGD--KIQIVGDDLFVTNPKRIKKGIEKKACNALLLKPNQIGTVTETLEAVK 222 (295)
T ss_dssp HHS-E--EEEESSS-TT-HHHHHHHHHHHTT--TSEEEESTTTTT-HHHHHHHHHCT--SEEEE-HHHHSSHHHHHHHHH
T ss_pred HhcCe--EEEEccccccchHHHHHHHHhhhc--ceeeecccccccchhhhhccchhhhccchhhhhhhhHHHHHHHHHHH
Confidence 78985 699999999999999999974422 38888887 5788899999999999999999999999 999999999
Q ss_pred HHHHcCCcEEEccCC-chHHHHHHHHHHHccCCC
Q 015289 331 VVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGC 363 (409)
Q Consensus 331 ~A~~~gi~~~~~~~~-es~i~~~~~~hlaaa~~~ 363 (409)
+|+++|+.+++++.. ||. -.+.+|||.+++.
T Consensus 223 ~a~~~g~~~vvS~rsgEte--D~~iadLaVg~~a 254 (295)
T PF00113_consen 223 LAKSAGWGVVVSHRSGETE--DTFIADLAVGLGA 254 (295)
T ss_dssp HHHHTT-EEEEE--SS--S----HHHHHHHHTT-
T ss_pred HHHHCCceeeccCCCCCcC--chhHHHHHhccCc
Confidence 999999999987643 443 3467788888764
No 50
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.84 E-value=7.1e-08 Score=95.64 Aligned_cols=121 Identities=22% Similarity=0.306 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHcCCCeEEEecCC-------------------------ChhHHHHHHHHHHhh-CCCcEEEEeCC-----
Q 015289 189 EAAELASKYRKQGFTTLKLKVGK-------------------------NLKEDIEVLRAIRAV-HPDSSFILDAN----- 237 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf~~~KiKvG~-------------------------~~~~d~~~l~avr~~-~~~~~l~vDaN----- 237 (409)
+.++.++++++.||..|.|..+. .++-.++.|++||++ ++++.|.+|.|
T Consensus 150 ~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~ 229 (338)
T cd04733 150 RFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQ 229 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcC
Confidence 34566677788999999998761 133457889999997 78999999998
Q ss_pred -CCCCHHHHHHHHHHHHhCCCCCceee-------cCCCC---C---------CHHHHHHhHHHhhccCCCeEEeCCCCCC
Q 015289 238 -EGYKPQEAVEVLEKLYEMGVTPVLFE-------QPVHR---D---------DWEGLGHVSHIAKDKFGVSVAADESCRS 297 (409)
Q Consensus 238 -~~w~~~~A~~~~~~L~~~~l~~~~iE-------eP~~~---~---------d~~~~~~l~~~~~~~~~ipIa~dEs~~~ 297 (409)
++|+.++++++++.|++.++. ||| +|... + .++..++++ +.+++||++++.+.+
T Consensus 230 ~~g~~~eea~~ia~~Le~~Gvd--~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik----~~v~iPVi~~G~i~t 303 (338)
T cd04733 230 RGGFTEEDALEVVEALEEAGVD--LVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIR----KVTKTPLMVTGGFRT 303 (338)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--EEEecCCCCCCccccccccCCccccchhhHHHHHHHH----HHcCCCEEEeCCCCC
Confidence 579999999999999999874 998 66532 1 123334444 468999999999999
Q ss_pred HHHHHHHHHcCCCCEEEe
Q 015289 298 LDDVKKIVKGNLADVINI 315 (409)
Q Consensus 298 ~~~~~~~i~~~a~div~~ 315 (409)
++++.++++.+.+|+|.+
T Consensus 304 ~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 304 RAAMEQALASGAVDGIGL 321 (338)
T ss_pred HHHHHHHHHcCCCCeeee
Confidence 999999999999999865
No 51
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.69 E-value=3.6e-07 Score=90.14 Aligned_cols=120 Identities=22% Similarity=0.292 Sum_probs=94.4
Q ss_pred HHHHHHHHHHcCCCeEEEecCC------------C-------------hhHHHHHHHHHHhh-CCCcEEEEeCC------
Q 015289 190 AAELASKYRKQGFTTLKLKVGK------------N-------------LKEDIEVLRAIRAV-HPDSSFILDAN------ 237 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~------------~-------------~~~d~~~l~avr~~-~~~~~l~vDaN------ 237 (409)
+.+.++.+.+.||..|+|+.+. + .+...+.+++||+. ++++.|.++.|
T Consensus 143 ~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~ 222 (327)
T cd02803 143 FAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVP 222 (327)
T ss_pred HHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCC
Confidence 4556677788999999999862 1 12237889999997 78889988877
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCceee-------cCCC---------CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHH
Q 015289 238 EGYKPQEAVEVLEKLYEMGVTPVLFE-------QPVH---------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDV 301 (409)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iE-------eP~~---------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~ 301 (409)
++|+.++++++++.|+++++. ||+ +|.. ..+++..++++ +.+++||++.+.+.+..++
T Consensus 223 ~g~~~~e~~~la~~l~~~G~d--~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir----~~~~iPVi~~Ggi~t~~~a 296 (327)
T cd02803 223 GGLTLEEAIEIAKALEEAGVD--ALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIK----KAVKIPVIAVGGIRDPEVA 296 (327)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEeCCCCCcccccccCCCCCCcchhHHHHHHHH----HHCCCCEEEeCCCCCHHHH
Confidence 457899999999999999975 884 6554 23445555554 3578999999999999999
Q ss_pred HHHHHcCCCCEEEe
Q 015289 302 KKIVKGNLADVINI 315 (409)
Q Consensus 302 ~~~i~~~a~div~~ 315 (409)
.++++.+.+|+|.+
T Consensus 297 ~~~l~~g~aD~V~i 310 (327)
T cd02803 297 EEILAEGKADLVAL 310 (327)
T ss_pred HHHHHCCCCCeeee
Confidence 99999988999865
No 52
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=98.63 E-value=5.5e-07 Score=89.80 Aligned_cols=122 Identities=20% Similarity=0.237 Sum_probs=92.9
Q ss_pred HHHHHHHHHHcCCCeEEEecC----------C---------------ChhHHHHHHHHHHhh-CCCcEEE-----EeCC-
Q 015289 190 AAELASKYRKQGFTTLKLKVG----------K---------------NLKEDIEVLRAIRAV-HPDSSFI-----LDAN- 237 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG----------~---------------~~~~d~~~l~avr~~-~~~~~l~-----vDaN- 237 (409)
+.+.++.+++.||..|+|+.+ + .++...+.+++||++ ++++.+. .|.+
T Consensus 139 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~ 218 (353)
T cd02930 139 FARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVE 218 (353)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCC
Confidence 455667778899999999863 1 145667899999997 7786664 5654
Q ss_pred CCCCHHHHHHHHHHHHhCCCC-----CceeecCCCCCC--------HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHH
Q 015289 238 EGYKPQEAVEVLEKLYEMGVT-----PVLFEQPVHRDD--------WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304 (409)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~-----~~~iEeP~~~~d--------~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~ 304 (409)
++|+.++++++++.|+++++. ..|.|+|++..+ .+..++++ +.+++||+.++.+.+++++.++
T Consensus 219 ~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik----~~v~iPVi~~G~i~~~~~a~~~ 294 (353)
T cd02930 219 GGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLK----RAVDIPVIASNRINTPEVAERL 294 (353)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHH----HhCCCCEEEcCCCCCHHHHHHH
Confidence 668999999999999998842 125688876431 22334444 4789999999999999999999
Q ss_pred HHcCCCCEEEe
Q 015289 305 VKGNLADVINI 315 (409)
Q Consensus 305 i~~~a~div~~ 315 (409)
++.+.+|+|++
T Consensus 295 i~~g~~D~V~~ 305 (353)
T cd02930 295 LADGDADMVSM 305 (353)
T ss_pred HHCCCCChhHh
Confidence 99999999854
No 53
>PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A ....
Probab=98.37 E-value=1.5e-05 Score=67.87 Aligned_cols=111 Identities=20% Similarity=0.242 Sum_probs=78.9
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC----------------CccCcccHHHHHHH
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL----------------PHVTAEDQQTAMVK 110 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~----------------~~~~~e~~~~~~~~ 110 (409)
+|++|..+.+ -.|.| .+++-|+|.+++|..|.+-++.. ..|.+..+..++..
T Consensus 1 ~I~~v~~r~I--------lDsrG----~PTVEveV~~~~g~~~ra~~PsGaStG~~Ea~elrD~~~~~~~gkgV~~Av~~ 68 (132)
T PF03952_consen 1 TITKVKAREI--------LDSRG----NPTVEVEVFTSNGNVGRASVPSGASTGSHEAVELRDGDPERYGGKGVSKAVEN 68 (132)
T ss_dssp BEEEEEEEEE--------E-TTS-----EEEEEEEEETTEEEEEEE--B-SSSSSSS-B---B-STTSGGGTBHHHHHHH
T ss_pred CeEEEEEEEE--------EcCCC----CceEEEEEEECCcccceeccccccCCCccccccccCCCcceecCcccchhhhh
Confidence 5777877775 23444 47899999999998888877542 12334456777777
Q ss_pred HHH-HHHHHcCCCCCCHHHHHHHHHhhc--C--CChhhHHHHHHHHHHHHHHHhhcCCchHHHh
Q 015289 111 ASE-ACEVLKESPAMALGSVFGVVAGLL--P--GHQFASVRAAVEMALIDAVAKSVSMPLWRLF 169 (409)
Q Consensus 111 ~~~-~~~~l~g~~~~~~~~~~~~~~~~~--~--g~~~~~a~said~AlwDl~gk~~g~Pl~~LL 169 (409)
+++ +.|.|+|.++.+...+.+.|.+.- + .+..+.+.-|+.+|++-+.|+..++|||++|
T Consensus 69 vn~~i~~~L~g~~~~dQ~~iD~~L~~lDgT~nk~~lGaNa~lavS~A~a~AaA~~~~~pL~~~l 132 (132)
T PF03952_consen 69 VNEIIAPALIGLDPTDQEEIDQILIELDGTPNKSRLGANAILAVSLAVAKAAAAAKGIPLYRYL 132 (132)
T ss_dssp HHHTHHHHHTTSBTT-HHHHHHHHHHHHTSTTSTTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred HHHHHHHHHHhcchhhHHHhCccceeccCChhhhcccchHHHHHHHHHHHHHHHHcCCChhhcC
Confidence 765 789999999999998887775532 1 1122568899999999999999999999986
No 54
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=97.78 E-value=0.0013 Score=64.45 Aligned_cols=143 Identities=15% Similarity=0.202 Sum_probs=105.1
Q ss_pred eeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC----------------ChhHHHHHHHHHHhhC-CCcEEEEeCC
Q 015289 175 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVH-PDSSFILDAN 237 (409)
Q Consensus 175 ~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~d~~~l~avr~~~-~~~~l~vDaN 237 (409)
..|+...+...+|+++++.++.+.+.||..+-|.+|. +++.-.+.++++|+.. +++.+.+=..
T Consensus 62 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR 141 (312)
T PRK10550 62 GTLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVR 141 (312)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEE
Confidence 3466677778899999998888888999999999872 3445556778888874 4677776666
Q ss_pred CCCC-HHHHHHHHHHHHhCCCCCce-----eecCCCC--CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCC
Q 015289 238 EGYK-PQEAVEVLEKLYEMGVTPVL-----FEQPVHR--DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 309 (409)
Q Consensus 238 ~~w~-~~~A~~~~~~L~~~~l~~~~-----iEeP~~~--~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a 309 (409)
-+|+ .+++.++++.+++.|+...- -+|-... -||+..+++.+ ..++||.+.=.+.+.+++.++++...
T Consensus 142 ~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~----~~~iPVi~nGdI~t~~da~~~l~~~g 217 (312)
T PRK10550 142 LGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQ----RLTIPVIANGEIWDWQSAQQCMAITG 217 (312)
T ss_pred CCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHh----hcCCcEEEeCCcCCHHHHHHHHhccC
Confidence 6775 35678999999998764111 1343322 26766777654 57899999999999999999999888
Q ss_pred CCEEEeCCCCCc
Q 015289 310 ADVINIKLAKVG 321 (409)
Q Consensus 310 ~div~~k~~~~G 321 (409)
+|.|++=-+-+|
T Consensus 218 ~DgVmiGRg~l~ 229 (312)
T PRK10550 218 CDAVMIGRGALN 229 (312)
T ss_pred CCEEEEcHHhHh
Confidence 999987443333
No 55
>PF05034 MAAL_N: Methylaspartate ammonia-lyase N-terminus; InterPro: IPR022665 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the N-terminal region of methylaspartate ammonia-lyase. This domain is structurally related to PF03952 from PFAM []. This domain is associated with the catalytic domain PF07476 from PFAM. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=97.56 E-value=0.00078 Score=57.85 Aligned_cols=97 Identities=18% Similarity=0.254 Sum_probs=63.2
Q ss_pred eeeEEEEEEEECCCceEEEEeccCC--ccCcc-cH---HHHHHHHH-HHHHHHcCCCCCCHHHHHHHHHhhcCCCh-hhH
Q 015289 73 QVENVAIRIELSNGCVGWGEAPVLP--HVTAE-DQ---QTAMVKAS-EACEVLKESPAMALGSVFGVVAGLLPGHQ-FAS 144 (409)
Q Consensus 73 ~~~~~iVrl~td~G~~G~GE~~~~~--~~~~e-~~---~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~g~~-~~~ 144 (409)
..+.+.|-+..+||.+.||.|...- +..+. .+ +..+..++ .+.|+|+|++......+.+.+.+...|.. ..+
T Consensus 49 ~gesisV~l~L~dG~va~GDCaaVQYSGagGRDPLF~a~~~ip~ie~~v~p~L~g~d~~~Fr~~a~~~d~~~~g~rlhtA 128 (159)
T PF05034_consen 49 AGESISVMLVLEDGQVAYGDCAAVQYSGAGGRDPLFLAEDFIPVIEKEVAPRLVGRDLSSFRENAEKFDELVDGKRLHTA 128 (159)
T ss_dssp EEEEEEEEEEETTS-EEEEEE---TTTTSTTS-S---HHHHHHHHHHHTHHHHTT-B-S-CHHHHHHHHH-ETTEE--HH
T ss_pred cCcEEEEEEEeCCCCEEEeeehheeecccCCCCCcccHHHHHHHHHhhccHHHcCCcHHHHHHHHHHHHhcccCCcchhH
Confidence 3578999999999999999998632 11111 11 12222333 47899999999999888888876644432 246
Q ss_pred HHHHHHHHHHHHHHhhcCCchHHHh
Q 015289 145 VRAAVEMALIDAVAKSVSMPLWRLF 169 (409)
Q Consensus 145 a~said~AlwDl~gk~~g~Pl~~LL 169 (409)
.+.+|..||+|+.|+..+.-..+.+
T Consensus 129 iRYGvsQALL~A~A~a~~~tmaeVi 153 (159)
T PF05034_consen 129 IRYGVSQALLDAAAKAQRTTMAEVI 153 (159)
T ss_dssp HHHHHHHHHHHHHHHHCTS-HHHHH
T ss_pred HHHhHHHHHHHHHHHHcCCcHHHHH
Confidence 8999999999999999988766654
No 56
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=97.41 E-value=0.0058 Score=60.21 Aligned_cols=138 Identities=17% Similarity=0.256 Sum_probs=99.2
Q ss_pred eeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC----------------ChhHHHHHHHHHHhhCCCcEEEEeCCCCC
Q 015289 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 240 (409)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~d~~~l~avr~~~~~~~l~vDaN~~w 240 (409)
++...+...+|+++++.++...+.||..+-+.+|- +++.-.+.++++|+.. ++.+.+=.+.+|
T Consensus 66 ~~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~-d~pv~vKiR~G~ 144 (321)
T PRK10415 66 IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV-DVPVTLKIRTGW 144 (321)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc-CCceEEEEEccc
Confidence 44466677799999888877777899999999882 2445556677887753 344544444667
Q ss_pred CH--HHHHHHHHHHHhCCCCCcee-------ecCCC-CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCC
Q 015289 241 KP--QEAVEVLEKLYEMGVTPVLF-------EQPVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 310 (409)
Q Consensus 241 ~~--~~A~~~~~~L~~~~l~~~~i-------EeP~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~ 310 (409)
+. .++.++++.+++.|+. +| ++-.. ..+++..+++++ .+++||.+.=.+.+.+++.++++...+
T Consensus 145 ~~~~~~~~~~a~~le~~G~d--~i~vh~rt~~~~~~G~a~~~~i~~ik~----~~~iPVI~nGgI~s~~da~~~l~~~ga 218 (321)
T PRK10415 145 APEHRNCVEIAQLAEDCGIQ--ALTIHGRTRACLFNGEAEYDSIRAVKQ----KVSIPVIANGDITDPLKARAVLDYTGA 218 (321)
T ss_pred cCCcchHHHHHHHHHHhCCC--EEEEecCccccccCCCcChHHHHHHHH----hcCCcEEEeCCCCCHHHHHHHHhccCC
Confidence 64 3578899999998874 55 33322 246766676654 678999999999999999999987779
Q ss_pred CEEEeCCCCCc
Q 015289 311 DVINIKLAKVG 321 (409)
Q Consensus 311 div~~k~~~~G 321 (409)
|.|++=-+-++
T Consensus 219 dgVmiGR~~l~ 229 (321)
T PRK10415 219 DALMIGRAAQG 229 (321)
T ss_pred CEEEEChHhhc
Confidence 99987544333
No 57
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.009 Score=58.86 Aligned_cols=140 Identities=21% Similarity=0.312 Sum_probs=110.3
Q ss_pred eeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC----------------CChhHHHHHHHHHHhhCCCcEEEEeCCC
Q 015289 175 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------KNLKEDIEVLRAIRAVHPDSSFILDANE 238 (409)
Q Consensus 175 ~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG----------------~~~~~d~~~l~avr~~~~~~~l~vDaN~ 238 (409)
..|+...+...+|+.+++.++...+.||..|-|.+| .+++.-.+.|++++++.+++.+.|=..-
T Consensus 66 e~p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRl 145 (323)
T COG0042 66 ERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRL 145 (323)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 445566777789988888888888899999999988 2456667788999998558889998889
Q ss_pred CCCHHH--HHHHHHHHHhCCCCCcee---------ecCCCCCCHHHHHHhHHHhhccCC-CeEEeCCCCCCHHHHHHHHH
Q 015289 239 GYKPQE--AVEVLEKLYEMGVTPVLF---------EQPVHRDDWEGLGHVSHIAKDKFG-VSVAADESCRSLDDVKKIVK 306 (409)
Q Consensus 239 ~w~~~~--A~~~~~~L~~~~l~~~~i---------EeP~~~~d~~~~~~l~~~~~~~~~-ipIa~dEs~~~~~~~~~~i~ 306 (409)
+|+.++ +.++++.+++.|....++ ..| -||+..+++++ ... +||.+.-.+.+.++.++.++
T Consensus 146 G~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~---ad~~~I~~vk~----~~~~ipvi~NGdI~s~~~a~~~l~ 218 (323)
T COG0042 146 GWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGP---ADWDYIKELKE----AVPSIPVIANGDIKSLEDAKEMLE 218 (323)
T ss_pred ccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCc---cCHHHHHHHHH----hCCCCeEEeCCCcCCHHHHHHHHH
Confidence 998665 778899999987653232 233 47888888875 445 99999999999999999999
Q ss_pred cCCCCEEEeCCCCCc
Q 015289 307 GNLADVINIKLAKVG 321 (409)
Q Consensus 307 ~~a~div~~k~~~~G 321 (409)
...+|.|.+--...|
T Consensus 219 ~tg~DgVMigRga~~ 233 (323)
T COG0042 219 YTGADGVMIGRGALG 233 (323)
T ss_pred hhCCCEEEEcHHHcc
Confidence 888999987544444
No 58
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=97.10 E-value=0.011 Score=57.28 Aligned_cols=132 Identities=14% Similarity=0.199 Sum_probs=95.8
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC-----------ChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHH
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-----------NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQE 244 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-----------~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~ 244 (409)
.|+..++...+++++.+.++.+.+.|+..+-+.++. +++.-.+.++++|+.. ++.+.+..+..++.++
T Consensus 99 ~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~ 177 (289)
T cd02810 99 QPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLED 177 (289)
T ss_pred CeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHH
Confidence 455666666688888888888888899999998871 2233345678888765 6778999888899989
Q ss_pred HHHHHHHHHhCCCCCceeecC---------------CCC-------------CCHHHHHHhHHHhhccC--CCeEEeCCC
Q 015289 245 AVEVLEKLYEMGVTPVLFEQP---------------VHR-------------DDWEGLGHVSHIAKDKF--GVSVAADES 294 (409)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEeP---------------~~~-------------~d~~~~~~l~~~~~~~~--~ipIa~dEs 294 (409)
..++++.+++.++. +|.=+ ... ..++..++++ +.. ++||.+.=.
T Consensus 178 ~~~~a~~l~~~Gad--~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~----~~~~~~ipiia~GG 251 (289)
T cd02810 178 IVELAKAAERAGAD--GLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLA----ARLQLDIPIIGVGG 251 (289)
T ss_pred HHHHHHHHHHcCCC--EEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHH----HhcCCCCCEEEECC
Confidence 99999999998864 55421 000 0122233333 345 799999889
Q ss_pred CCCHHHHHHHHHcCCCCEEEe
Q 015289 295 CRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 295 ~~~~~~~~~~i~~~a~div~~ 315 (409)
+.+.+++.++++.| +|.+++
T Consensus 252 I~~~~da~~~l~~G-Ad~V~v 271 (289)
T cd02810 252 IDSGEDVLEMLMAG-ASAVQV 271 (289)
T ss_pred CCCHHHHHHHHHcC-ccHheE
Confidence 99999999999988 788765
No 59
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=97.01 E-value=0.037 Score=51.80 Aligned_cols=131 Identities=15% Similarity=0.232 Sum_probs=94.1
Q ss_pred eeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC----------------CChhHHHHHHHHHHhhCCCcEEEEeCCCCC
Q 015289 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------KNLKEDIEVLRAIRAVHPDSSFILDANEGY 240 (409)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG----------------~~~~~d~~~l~avr~~~~~~~l~vDaN~~w 240 (409)
|+..++...+++++.+.++.. +.++..+-+.+| .+++.-.+.++++++. ++.+.+=-.-.|
T Consensus 69 ~vivnv~~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~--~~PVsvKiR~~~ 145 (231)
T TIGR00736 69 LVSVNVRFVDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL--NKPIFVKIRGNC 145 (231)
T ss_pred CEEEEEecCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC--CCcEEEEeCCCC
Confidence 556677778999988776654 568999998876 2455556667777754 344555554446
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCCCC---CHHHHHHhHHHhhccC-CCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRD---DWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~---d~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+..+..++++.+++.|....-+.+=.+.. +|+.++++++ .. .+||.+.=.+.+.+|+.++++.| +|.|++
T Consensus 146 ~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~----~~~~ipIIgNGgI~s~eda~e~l~~G-Ad~Vmv 219 (231)
T TIGR00736 146 IPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSE----EFNDKIIIGNNSIDDIESAKEMLKAG-ADFVSV 219 (231)
T ss_pred CcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHH----hcCCCcEEEECCcCCHHHHHHHHHhC-CCeEEE
Confidence 65667889999999987645566544432 5666666654 55 49999999999999999999975 798876
No 60
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=97.00 E-value=0.0096 Score=58.33 Aligned_cols=143 Identities=24% Similarity=0.371 Sum_probs=96.3
Q ss_pred HHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC----------------CChhHHHHHHHHHHhhCCCc
Q 015289 167 RLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------KNLKEDIEVLRAIRAVHPDS 230 (409)
Q Consensus 167 ~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG----------------~~~~~d~~~l~avr~~~~~~ 230 (409)
+++......-|+...+...+|+.+.+.++...+.||..|-|.+| .+++.-.+.|+++++..+ .
T Consensus 45 ~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~-~ 123 (309)
T PF01207_consen 45 RLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP-I 123 (309)
T ss_dssp HHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S-S
T ss_pred ecccccccccceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc-c
Confidence 33333333345666777789999888777666669999999988 245666677888888654 6
Q ss_pred EEEEeCCCCCC--HHHHHHHHHHHHhCCCCCcee-------ecCCC-CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHH
Q 015289 231 SFILDANEGYK--PQEAVEVLEKLYEMGVTPVLF-------EQPVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 300 (409)
Q Consensus 231 ~l~vDaN~~w~--~~~A~~~~~~L~~~~l~~~~i-------EeP~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~ 300 (409)
.+.+-..-+|+ .++.+++++.+++.|+. +| +|-.. +-||+.++++.+ ...+||.+.=.+.+++|
T Consensus 124 pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~--~i~vH~Rt~~q~~~~~a~w~~i~~i~~----~~~ipvi~NGdI~s~~d 197 (309)
T PF01207_consen 124 PVSVKIRLGWDDSPEETIEFARILEDAGVS--AITVHGRTRKQRYKGPADWEAIAEIKE----ALPIPVIANGDIFSPED 197 (309)
T ss_dssp EEEEEEESECT--CHHHHHHHHHHHHTT----EEEEECS-TTCCCTS---HHHHHHCHH----C-TSEEEEESS--SHHH
T ss_pred ceEEecccccccchhHHHHHHHHhhhcccc--eEEEecCchhhcCCcccchHHHHHHhh----cccceeEEcCccCCHHH
Confidence 77777777887 67789999999999875 54 34433 457888888764 67799999999999999
Q ss_pred HHHHHHcCCCCEEEeC
Q 015289 301 VKKIVKGNLADVINIK 316 (409)
Q Consensus 301 ~~~~i~~~a~div~~k 316 (409)
+.++++.-.+|.|.+=
T Consensus 198 ~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 198 AERMLEQTGADGVMIG 213 (309)
T ss_dssp HHHHCCCH-SSEEEES
T ss_pred HHHHHHhcCCcEEEEc
Confidence 9999987568998763
No 61
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=96.93 E-value=0.026 Score=57.00 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=83.0
Q ss_pred HHHHHHHHHHcCCCeEEEec---CC-------------------C----hhHHHHHHHHHHhh-CCCcEE--EEeC----
Q 015289 190 AAELASKYRKQGFTTLKLKV---GK-------------------N----LKEDIEVLRAIRAV-HPDSSF--ILDA---- 236 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKv---G~-------------------~----~~~d~~~l~avr~~-~~~~~l--~vDa---- 236 (409)
..+.++.+++.||..|.|.. |- . ++--++.+++||+. ++++.+ ++.+
T Consensus 152 f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~ 231 (382)
T cd02931 152 FGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYI 231 (382)
T ss_pred HHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhc
Confidence 35556677788999999997 40 1 12335788999997 677543 3332
Q ss_pred --------------CCCCCHHHHHHHHHHHHhCCCCCceeec-------CC---CCCC-HHH-HHHhHHHhhccCCCeEE
Q 015289 237 --------------NEGYKPQEAVEVLEKLYEMGVTPVLFEQ-------PV---HRDD-WEG-LGHVSHIAKDKFGVSVA 290 (409)
Q Consensus 237 --------------N~~w~~~~A~~~~~~L~~~~l~~~~iEe-------P~---~~~d-~~~-~~~l~~~~~~~~~ipIa 290 (409)
+++++.++++++++.|++.++. |++= +. ++.. ..+ +..+.+..++..++||.
T Consensus 232 ~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD--~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi 309 (382)
T cd02931 232 KDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYD--ALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVI 309 (382)
T ss_pred cccccccccccccccCCCCHHHHHHHHHHHHHhCCC--EEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEE
Confidence 3478999999999999998764 5531 11 0000 000 11122223346789999
Q ss_pred eCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 291 ADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 291 ~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+-=.+.++++..++++.+.+|.|.+
T Consensus 310 ~~G~i~~~~~~~~~l~~g~~D~V~~ 334 (382)
T cd02931 310 MAGRMEDPELASEAINEGIADMISL 334 (382)
T ss_pred EeCCCCCHHHHHHHHHcCCCCeeee
Confidence 9889999999999999999999854
No 62
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.92 E-value=0.042 Score=54.02 Aligned_cols=135 Identities=16% Similarity=0.209 Sum_probs=94.8
Q ss_pred CeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC----------------ChhHHHHHHHHHHhhCCCcEEEEeCC
Q 015289 174 NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPDSSFILDAN 237 (409)
Q Consensus 174 ~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~d~~~l~avr~~~~~~~l~vDaN 237 (409)
...|+...+...+++++.+.++.+.+.||..+-+..|. +++.-.+.++++|+..+ +.+.+-..
T Consensus 61 ~~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~-~pv~vKir 139 (319)
T TIGR00737 61 DETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD-IPVTVKIR 139 (319)
T ss_pred ccceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC-CCEEEEEE
Confidence 34566677788899999998888888899999998872 22334466777877532 44555444
Q ss_pred CCCCH--HHHHHHHHHHHhCCCCCceee-------cCCC-CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHc
Q 015289 238 EGYKP--QEAVEVLEKLYEMGVTPVLFE-------QPVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307 (409)
Q Consensus 238 ~~w~~--~~A~~~~~~L~~~~l~~~~iE-------eP~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 307 (409)
.+|+. .+..++++.+++.|+. +|- +-.+ +-+++..++++ +..++||.+.=.+.+.+++.++++.
T Consensus 140 ~g~~~~~~~~~~~a~~l~~~G~d--~i~vh~r~~~~~~~~~~~~~~i~~i~----~~~~ipvi~nGgI~~~~da~~~l~~ 213 (319)
T TIGR00737 140 IGWDDAHINAVEAARIAEDAGAQ--AVTLHGRTRAQGYSGEANWDIIARVK----QAVRIPVIGNGDIFSPEDAKAMLET 213 (319)
T ss_pred cccCCCcchHHHHHHHHHHhCCC--EEEEEcccccccCCCchhHHHHHHHH----HcCCCcEEEeCCCCCHHHHHHHHHh
Confidence 45542 3467888999988864 432 1111 22455556554 3678999999999999999999977
Q ss_pred CCCCEEEe
Q 015289 308 NLADVINI 315 (409)
Q Consensus 308 ~a~div~~ 315 (409)
+.+|.|++
T Consensus 214 ~gad~Vmi 221 (319)
T TIGR00737 214 TGCDGVMI 221 (319)
T ss_pred hCCCEEEE
Confidence 77899987
No 63
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=96.91 E-value=0.04 Score=53.66 Aligned_cols=131 Identities=16% Similarity=0.224 Sum_probs=93.1
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcC-CCeEEEecC------------CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCH
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQG-FTTLKLKVG------------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKP 242 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~G-f~~~KiKvG------------~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~ 242 (409)
+|+..++...++++..+.++++.+.| |..+-+.++ .+++.-.+.+++||+.. ++.+.+.-+. +.
T Consensus 92 ~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~--~~ 168 (301)
T PRK07259 92 TPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTP--NV 168 (301)
T ss_pred CcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCC--Cc
Confidence 45566776778999999888888888 999998653 23455567788888865 5677777664 44
Q ss_pred HHHHHHHHHHHhCCCCCceee---------------cCC-------------CCCCHHHHHHhHHHhhccCCCeEEeCCC
Q 015289 243 QEAVEVLEKLYEMGVTPVLFE---------------QPV-------------HRDDWEGLGHVSHIAKDKFGVSVAADES 294 (409)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iE---------------eP~-------------~~~d~~~~~~l~~~~~~~~~ipIa~dEs 294 (409)
++..++++.+++.++. .|. +|. .+..++..++++ +.+++||...=.
T Consensus 169 ~~~~~~a~~l~~~G~d--~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~----~~~~ipvi~~GG 242 (301)
T PRK07259 169 TDIVEIAKAAEEAGAD--GLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVY----QAVDIPIIGMGG 242 (301)
T ss_pred hhHHHHHHHHHHcCCC--EEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHH----HhCCCCEEEECC
Confidence 5777888999887753 221 111 111233344443 356899999999
Q ss_pred CCCHHHHHHHHHcCCCCEEEeC
Q 015289 295 CRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 295 ~~~~~~~~~~i~~~a~div~~k 316 (409)
+.+.+++.++++.| +|.|++=
T Consensus 243 I~~~~da~~~l~aG-Ad~V~ig 263 (301)
T PRK07259 243 ISSAEDAIEFIMAG-ASAVQVG 263 (301)
T ss_pred CCCHHHHHHHHHcC-CCceeEc
Confidence 99999999999988 6998864
No 64
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=96.90 E-value=0.035 Score=55.25 Aligned_cols=120 Identities=21% Similarity=0.326 Sum_probs=84.5
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------Ch----hHHHHHHHHHHhh-CCCc--EEEEeC----C
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDS--SFILDA----N 237 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~d~~~l~avr~~-~~~~--~l~vDa----N 237 (409)
+++.++++.+.||..+-|..+. ++ +--++.+++||+. ++++ .+++-+ .
T Consensus 143 f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~ 222 (343)
T cd04734 143 FADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTE 222 (343)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccC
Confidence 4555667778899999999831 12 2335778999997 6664 455554 3
Q ss_pred CCCCHHHHHHHHHHHHhCC-CCCceee-------cC------CCC------CCHHHHHHhHHHhhccCCCeEEeCCCCCC
Q 015289 238 EGYKPQEAVEVLEKLYEMG-VTPVLFE-------QP------VHR------DDWEGLGHVSHIAKDKFGVSVAADESCRS 297 (409)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~-l~~~~iE-------eP------~~~------~d~~~~~~l~~~~~~~~~ipIa~dEs~~~ 297 (409)
++++.++++++++.|++.+ +. |++ ++ .++ .+++..++++ +..++||...=.+.+
T Consensus 223 ~G~~~~e~~~~~~~l~~~G~vd--~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik----~~~~ipvi~~G~i~~ 296 (343)
T cd04734 223 GGLSPDEALEIAARLAAEGLID--YVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIK----QAVDLPVFHAGRIRD 296 (343)
T ss_pred CCCCHHHHHHHHHHHHhcCCCC--EEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHH----HHcCCCEEeeCCCCC
Confidence 4588999999999999987 54 554 21 111 1233333343 467899999888999
Q ss_pred HHHHHHHHHcCCCCEEEe
Q 015289 298 LDDVKKIVKGNLADVINI 315 (409)
Q Consensus 298 ~~~~~~~i~~~a~div~~ 315 (409)
++++.++++.+.+|.|.+
T Consensus 297 ~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 297 PAEAEQALAAGHADMVGM 314 (343)
T ss_pred HHHHHHHHHcCCCCeeee
Confidence 999999999998999855
No 65
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=96.88 E-value=0.071 Score=52.81 Aligned_cols=142 Identities=15% Similarity=0.243 Sum_probs=97.9
Q ss_pred HHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC----------------ChhHHHHHHHHHHhhC--C
Q 015289 167 RLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVH--P 228 (409)
Q Consensus 167 ~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~d~~~l~avr~~~--~ 228 (409)
+++.-....-|+...+...+|+++++.++.+.+.||..|-+..|- +++.-.+.++++|+.. |
T Consensus 56 ~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~p 135 (333)
T PRK11815 56 RLLAFDPEEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIP 135 (333)
T ss_pred HHhccCCCCCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCc
Confidence 344333334566778888899999888888888899999998771 3445567788888852 3
Q ss_pred -CcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceee--------cC--------CCCCCHHHHHHhHHHhhcc-CCCeEE
Q 015289 229 -DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE--------QP--------VHRDDWEGLGHVSHIAKDK-FGVSVA 290 (409)
Q Consensus 229 -~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE--------eP--------~~~~d~~~~~~l~~~~~~~-~~ipIa 290 (409)
.+++++-....-+.+++.++++.+++.|+. +|. |- +++-+++..+++++ . .++||.
T Consensus 136 VsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d--~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~----~~~~iPVI 209 (333)
T PRK11815 136 VTVKHRIGIDDQDSYEFLCDFVDTVAEAGCD--TFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKR----DFPHLTIE 209 (333)
T ss_pred eEEEEEeeeCCCcCHHHHHHHHHHHHHhCCC--EEEEcCCchhhcCCCccccccCCCcCHHHHHHHHH----hCCCCeEE
Confidence 344444322223456788999999998865 442 11 12345766776653 4 379999
Q ss_pred eCCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 291 ADESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 291 ~dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
+.=.+.+++++.++++ + +|.|++=
T Consensus 210 ~nGgI~s~eda~~~l~-~-aDgVmIG 233 (333)
T PRK11815 210 INGGIKTLEEAKEHLQ-H-VDGVMIG 233 (333)
T ss_pred EECCcCCHHHHHHHHh-c-CCEEEEc
Confidence 9889999999999997 3 8988763
No 66
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=96.72 E-value=0.089 Score=49.41 Aligned_cols=131 Identities=11% Similarity=0.191 Sum_probs=90.0
Q ss_pred eeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC-C---------------ChhHHHHHHHHHHhhCCCcEEEEeCCCCC
Q 015289 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-K---------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 240 (409)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG-~---------------~~~~d~~~l~avr~~~~~~~l~vDaN~~w 240 (409)
|+..++...+++++.+.++...+ +...+-+.+| + +++.-.+.++++|+. ++.+.+=....|
T Consensus 74 p~~vqi~g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~--~~pVsvKir~g~ 150 (233)
T cd02911 74 LVGVNVRSSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKET--GVPVSVKIRAGV 150 (233)
T ss_pred eEEEEecCCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhc--CCCEEEEEcCCc
Confidence 44556666788888877776644 4588888877 1 344556678888875 566666666678
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCC--CCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPV--HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~--~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
+ ++..++++.+++.|+...-+..=. ..-|++..+++ +.++||.+.=.+.+.+++.++++.| +|.|++--.
T Consensus 151 ~-~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i------~~~ipVIgnGgI~s~eda~~~l~~G-aD~VmiGR~ 222 (233)
T cd02911 151 D-VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDI------STELFIIGNNSVTTIESAKEMFSYG-ADMVSVARA 222 (233)
T ss_pred C-cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHh------cCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEcCC
Confidence 7 777889999999886521121111 12245444443 1579999999999999999999977 899987533
No 67
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.71 E-value=0.051 Score=54.35 Aligned_cols=119 Identities=28% Similarity=0.387 Sum_probs=80.2
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------Ch----hHHHHHHHHHHhh-CCCcEEEEeCC------
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDSSFILDAN------ 237 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~d~~~l~avr~~-~~~~~l~vDaN------ 237 (409)
..+.++.+++.||..|-|+.+. ++ +--.+.+++||++ ++|+.+.+=.|
T Consensus 146 f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~ 225 (361)
T cd04747 146 FARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQD 225 (361)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccc
Confidence 3555677778899999999652 11 2345788999997 78865444222
Q ss_pred ----CCCCHHHHHHHHHHHHhCCCCCceee-------cC-CCCCCHHHHHHhHHHhhccCCCeEEeCCCC----------
Q 015289 238 ----EGYKPQEAVEVLEKLYEMGVTPVLFE-------QP-VHRDDWEGLGHVSHIAKDKFGVSVAADESC---------- 295 (409)
Q Consensus 238 ----~~w~~~~A~~~~~~L~~~~l~~~~iE-------eP-~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~---------- 295 (409)
.+.+.+++.++++.|++.++. +|+ +| ....++.-.+++ ++..++||..-=++
T Consensus 226 ~~~~~g~~~~e~~~~~~~l~~~gvd--~i~vs~g~~~~~~~~~~~~~~~~~~----k~~~~~pv~~~G~i~~~~~~~~~~ 299 (361)
T cd04747 226 YTARLADTPDELEALLAPLVDAGVD--IFHCSTRRFWEPEFEGSELNLAGWT----KKLTGLPTITVGSVGLDGDFIGAF 299 (361)
T ss_pred cccCCCCCHHHHHHHHHHHHHcCCC--EEEecCCCccCCCcCccchhHHHHH----HHHcCCCEEEECCccccccccccc
Confidence 147889999999999988764 453 22 222222222233 34567898876555
Q ss_pred --------CCHHHHHHHHHcCCCCEEE
Q 015289 296 --------RSLDDVKKIVKGNLADVIN 314 (409)
Q Consensus 296 --------~~~~~~~~~i~~~a~div~ 314 (409)
.++++..++++.+.+|.|.
T Consensus 300 ~~~~~~~~~~~~~a~~~l~~g~~D~V~ 326 (361)
T cd04747 300 AGDEGASPASLDRLLERLERGEFDLVA 326 (361)
T ss_pred ccccccccCCHHHHHHHHHCCCCCeeh
Confidence 5889999999999899874
No 68
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.61 E-value=0.13 Score=50.68 Aligned_cols=141 Identities=13% Similarity=0.202 Sum_probs=96.5
Q ss_pred HhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC----------------ChhHHHHHHHHHHhhCCCcE
Q 015289 168 LFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPDSS 231 (409)
Q Consensus 168 LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~d~~~l~avr~~~~~~~ 231 (409)
+|.-.....|+...+...+|+++++.++.+.+.||..+-|.+|- +++.-.+.+++++++. ++.
T Consensus 47 ~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~-~~P 125 (318)
T TIGR00742 47 ILKFSPEESPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAV-NIP 125 (318)
T ss_pred HcccCCCCCcEEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHh-CCC
Confidence 44433345566778888899999888888877899999999872 3444566788888753 223
Q ss_pred EEEeCCCCC----CHHHHHHHHHHHHhCCCCCceee--------cCCCC--------CCHHHHHHhHHHhhccC-CCeEE
Q 015289 232 FILDANEGY----KPQEAVEVLEKLYEMGVTPVLFE--------QPVHR--------DDWEGLGHVSHIAKDKF-GVSVA 290 (409)
Q Consensus 232 l~vDaN~~w----~~~~A~~~~~~L~~~~l~~~~iE--------eP~~~--------~d~~~~~~l~~~~~~~~-~ipIa 290 (409)
+.+=..-+| +.+.+.++++.+++.|+. +|. |-+.. -+|+..+++++ .. .+||.
T Consensus 126 VsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~--~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~----~~~~ipVi 199 (318)
T TIGR00742 126 VTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQ--NFIVHARKAWLSGLSPKENREIPPLRYERVYQLKK----DFPHLTIE 199 (318)
T ss_pred eEEEEecCCCCcchHHHHHHHHHHHHHcCCC--EEEEeCCchhhcCCCccccccCCchhHHHHHHHHH----hCCCCcEE
Confidence 333333333 346778999999988864 442 22221 25665566653 34 79999
Q ss_pred eCCCCCCHHHHHHHHHcCCCCEEEeCC
Q 015289 291 ADESCRSLDDVKKIVKGNLADVINIKL 317 (409)
Q Consensus 291 ~dEs~~~~~~~~~~i~~~a~div~~k~ 317 (409)
+.=.+.+.+|+.++++ .+|.+++=-
T Consensus 200 ~NGdI~s~~da~~~l~--g~dgVMigR 224 (318)
T TIGR00742 200 INGGIKNSEQIKQHLS--HVDGVMVGR 224 (318)
T ss_pred EECCcCCHHHHHHHHh--CCCEEEECH
Confidence 9889999999999886 489998743
No 69
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.57 E-value=0.11 Score=50.52 Aligned_cols=133 Identities=16% Similarity=0.208 Sum_probs=91.0
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC------------CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHH
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG------------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQ 243 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG------------~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~ 243 (409)
.|+..++...++++..+.++.+.+.|+..+-+.++ .+++.-.+.++++|+.. ++.+.+-.+. +.+
T Consensus 90 ~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-~~Pv~vKl~~--~~~ 166 (296)
T cd04740 90 TPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT-DVPVIVKLTP--NVT 166 (296)
T ss_pred CcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc-CCCEEEEeCC--Cch
Confidence 35566666678888888888888889999999765 23444556788888864 4566665543 334
Q ss_pred HHHHHHHHHHhCCCCCceee---------------cCCC-------------CCCHHHHHHhHHHhhccCCCeEEeCCCC
Q 015289 244 EAVEVLEKLYEMGVTPVLFE---------------QPVH-------------RDDWEGLGHVSHIAKDKFGVSVAADESC 295 (409)
Q Consensus 244 ~A~~~~~~L~~~~l~~~~iE---------------eP~~-------------~~d~~~~~~l~~~~~~~~~ipIa~dEs~ 295 (409)
+..++++.+++.++. .|- .|.. +..++..++++ +..++||...=.+
T Consensus 167 ~~~~~a~~~~~~G~d--~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~----~~~~ipii~~GGI 240 (296)
T cd04740 167 DIVEIARAAEEAGAD--GLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVY----KAVEIPIIGVGGI 240 (296)
T ss_pred hHHHHHHHHHHcCCC--EEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHH----HhcCCCEEEECCC
Confidence 667888888887753 221 1210 11123334443 3568999999999
Q ss_pred CCHHHHHHHHHcCCCCEEEeCCC
Q 015289 296 RSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 296 ~~~~~~~~~i~~~a~div~~k~~ 318 (409)
.+.+++.++++.| +|.|++=-.
T Consensus 241 ~~~~da~~~l~~G-Ad~V~igra 262 (296)
T cd04740 241 ASGEDALEFLMAG-ASAVQVGTA 262 (296)
T ss_pred CCHHHHHHHHHcC-CCEEEEchh
Confidence 9999999999988 699987533
No 70
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.26 E-value=0.096 Score=57.77 Aligned_cols=144 Identities=20% Similarity=0.284 Sum_probs=92.3
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------C----hhHHHHHHHHHHhh-CCCcEEE--EeC----C
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------N----LKEDIEVLRAIRAV-HPDSSFI--LDA----N 237 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~----~~~d~~~l~avr~~-~~~~~l~--vDa----N 237 (409)
+++.++++++.||..|-|..+. + ++--++.+++||++ ++++.|. +-+ .
T Consensus 553 f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~ 632 (765)
T PRK08255 553 FVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVE 632 (765)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccC
Confidence 3555667778999999998761 1 22345788999997 6775433 332 3
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCceeec--------CCCCCCHHHH-HHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcC
Q 015289 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQ--------PVHRDDWEGL-GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308 (409)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEe--------P~~~~d~~~~-~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~ 308 (409)
++|+.++++++++.|++.++. ||+= +.+.. -..+ ..+++.+++..++||..-=.+.++.+..++++.+
T Consensus 633 ~g~~~~~~~~~~~~l~~~g~d--~i~vs~g~~~~~~~~~~-~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g 709 (765)
T PRK08255 633 GGNTPDDAVEIARAFKAAGAD--LIDVSSGQVSKDEKPVY-GRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAG 709 (765)
T ss_pred CCCCHHHHHHHHHHHHhcCCc--EEEeCCCCCCcCCCCCc-CccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcC
Confidence 578999999999999998864 5541 11000 0001 1122223446789999988999999999999999
Q ss_pred CCCEEEeCCCCCcHHHHHHHHHHHHHcCCc
Q 015289 309 LADVINIKLAKVGVLGALEIIEVVRASGLN 338 (409)
Q Consensus 309 a~div~~k~~~~Gi~~~~~i~~~A~~~gi~ 338 (409)
.+|.|.+=-.. +..--=+...+++.++.
T Consensus 710 ~~D~v~~gR~~--l~dP~~~~~~~~~~~~~ 737 (765)
T PRK08255 710 RADLCALARPH--LADPAWTLHEAAEIGYR 737 (765)
T ss_pred CcceeeEcHHH--HhCccHHHHHHHHcCCC
Confidence 99998552111 11111234446666665
No 71
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=96.22 E-value=0.12 Score=51.85 Aligned_cols=123 Identities=14% Similarity=0.191 Sum_probs=80.7
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------C----hhHHHHHHHHHHhh-CCCc-EEEEe-------
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------N----LKEDIEVLRAIRAV-HPDS-SFILD------- 235 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~----~~~d~~~l~avr~~-~~~~-~l~vD------- 235 (409)
.++.|+.+++.||..+-|+.+. + .+--++.+++||++ +++. .+++-
T Consensus 161 f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~ 240 (362)
T PRK10605 161 FRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNN 240 (362)
T ss_pred HHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCcccccc
Confidence 3556677788999999999751 1 12345788999997 6653 44442
Q ss_pred CCCCCCHHH-HHHHHHHHHhCCCCCceeecCCCCC--CHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCE
Q 015289 236 ANEGYKPQE-AVEVLEKLYEMGVTPVLFEQPVHRD--DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADV 312 (409)
Q Consensus 236 aN~~w~~~~-A~~~~~~L~~~~l~~~~iEeP~~~~--d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~di 312 (409)
..++++.++ ++++++.|++.++. +|+=-.... ...-...+++..++.+++||...-. .+++...++++.|.+|.
T Consensus 241 ~~~G~~~~e~~~~~~~~L~~~giD--~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~-~~~~~ae~~i~~G~~D~ 317 (362)
T PRK10605 241 VDNGPNEEADALYLIEQLGKRGIA--YLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGAGA-YTAEKAETLIGKGLIDA 317 (362)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCC--EEEeccccccCCccccHHHHHHHHHHCCCCEEEeCC-CCHHHHHHHHHcCCCCE
Confidence 234688888 89999999998764 665221100 0000112222334467888888655 48999999999999999
Q ss_pred EEe
Q 015289 313 INI 315 (409)
Q Consensus 313 v~~ 315 (409)
|-+
T Consensus 318 V~~ 320 (362)
T PRK10605 318 VAF 320 (362)
T ss_pred EEE
Confidence 744
No 72
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=96.14 E-value=0.13 Score=50.99 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=81.1
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------Ch----hHHHHHHHHHHhhCC-CcEEEEe----CCCC
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAVHP-DSSFILD----ANEG 239 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~d~~~l~avr~~~~-~~~l~vD----aN~~ 239 (409)
..+.++.+++.||..+.|..+. ++ +--.+.+++||++.+ -+.+++- .+++
T Consensus 144 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G 223 (337)
T PRK13523 144 FKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGG 223 (337)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCC
Confidence 3455667778899999999761 12 223467888888642 2333333 3457
Q ss_pred CCHHHHHHHHHHHHhCCCCCceeec--------CCC---CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcC
Q 015289 240 YKPQEAVEVLEKLYEMGVTPVLFEQ--------PVH---RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308 (409)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEe--------P~~---~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~ 308 (409)
++.++++++++.|++.++. ||+= +.. ..+++..+++ ++..++||...=.+.++++..++++.+
T Consensus 224 ~~~~e~~~i~~~l~~~gvD--~i~vs~g~~~~~~~~~~~~~~~~~~~~i----k~~~~ipVi~~G~i~~~~~a~~~l~~g 297 (337)
T PRK13523 224 LTVQDYVQYAKWMKEQGVD--LIDVSSGAVVPARIDVYPGYQVPFAEHI----REHANIATGAVGLITSGAQAEEILQNN 297 (337)
T ss_pred CCHHHHHHHHHHHHHcCCC--EEEeCCCCCCCCCCCCCccccHHHHHHH----HhhcCCcEEEeCCCCCHHHHHHHHHcC
Confidence 8999999999999998764 5531 111 1123333334 446789998888889999999999999
Q ss_pred CCCEEE
Q 015289 309 LADVIN 314 (409)
Q Consensus 309 a~div~ 314 (409)
.+|.|.
T Consensus 298 ~~D~V~ 303 (337)
T PRK13523 298 RADLIF 303 (337)
T ss_pred CCChHH
Confidence 899873
No 73
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=96.13 E-value=0.14 Score=51.32 Aligned_cols=125 Identities=21% Similarity=0.244 Sum_probs=83.1
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------C----hhHHHHHHHHHHhh-CCCc--EEEEeC----C
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------N----LKEDIEVLRAIRAV-HPDS--SFILDA----N 237 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~----~~~d~~~l~avr~~-~~~~--~l~vDa----N 237 (409)
..+.++++++.||..+.|+-.. + .+--+|.+++||++ +++. .+++=+ +
T Consensus 151 f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~ 230 (363)
T COG1902 151 FARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFD 230 (363)
T ss_pred HHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCC
Confidence 3556677788999999999641 1 23456789999998 6764 444332 2
Q ss_pred -CCCCHHHHHHHHHHHHhCC-CCCcee----ecCCCCCCHH--HH-HHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcC
Q 015289 238 -EGYKPQEAVEVLEKLYEMG-VTPVLF----EQPVHRDDWE--GL-GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308 (409)
Q Consensus 238 -~~w~~~~A~~~~~~L~~~~-l~~~~i----EeP~~~~d~~--~~-~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~ 308 (409)
.+|+.+++.++++.|++.+ +....+ .++-..-... ++ ...+...+....+|+.+--.+++++...++++.|
T Consensus 231 ~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g 310 (363)
T COG1902 231 GGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASG 310 (363)
T ss_pred CCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcC
Confidence 3789999999999999988 432122 2221111111 11 1222112335679999998999999999999999
Q ss_pred CCCEEE
Q 015289 309 LADVIN 314 (409)
Q Consensus 309 a~div~ 314 (409)
.+|.|-
T Consensus 311 ~aDlVa 316 (363)
T COG1902 311 RADLVA 316 (363)
T ss_pred CCCEEE
Confidence 889873
No 74
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=96.11 E-value=0.2 Score=48.71 Aligned_cols=155 Identities=16% Similarity=0.198 Sum_probs=99.3
Q ss_pred eeeeeecCCCHHHHHHHHHHHHHc--CCCeEEEecC------------CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCH
Q 015289 177 TTDITIPIVSPAEAAELASKYRKQ--GFTTLKLKVG------------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKP 242 (409)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~~~~~~--Gf~~~KiKvG------------~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~ 242 (409)
|+..++...+++++.+.++.+.+. ++..+-+.+| .+++.-.+.++++|+.. ++.+.+.-+. +.
T Consensus 92 pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~-~~pv~vKi~~--~~ 168 (300)
T TIGR01037 92 PLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT-DVPVFAKLSP--NV 168 (300)
T ss_pred cEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEECCC--Ch
Confidence 455666667888988887777654 3889999887 13444566788888764 4667777764 44
Q ss_pred HHHHHHHHHHHhCCCCCceee---------------cCCCCC---------CH-HHHHHhHHHhhccCCCeEEeCCCCCC
Q 015289 243 QEAVEVLEKLYEMGVTPVLFE---------------QPVHRD---------DW-EGLGHVSHIAKDKFGVSVAADESCRS 297 (409)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iE---------------eP~~~~---------d~-~~~~~l~~~~~~~~~ipIa~dEs~~~ 297 (409)
++..++++.+++.++. +|. +|.... .+ -.++.+.+ +++..++||.+.=.+.+
T Consensus 169 ~~~~~~a~~l~~~G~d--~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~-i~~~~~ipvi~~GGI~s 245 (300)
T TIGR01037 169 TDITEIAKAAEEAGAD--GLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYD-VYKMVDIPIIGVGGITS 245 (300)
T ss_pred hhHHHHHHHHHHcCCC--EEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHH-HHhcCCCCEEEECCCCC
Confidence 5778899999998864 442 110000 00 01122222 23467899999999999
Q ss_pred HHHHHHHHHcCCCCEEEeCCCCC--c--HHHH-HHHHHHHHHcCCc
Q 015289 298 LDDVKKIVKGNLADVINIKLAKV--G--VLGA-LEIIEVVRASGLN 338 (409)
Q Consensus 298 ~~~~~~~i~~~a~div~~k~~~~--G--i~~~-~~i~~~A~~~gi~ 338 (409)
.+++.++++.| +|.+++=-.-+ | +... ..+.++.+++|+.
T Consensus 246 ~~da~~~l~~G-Ad~V~igr~~l~~p~~~~~i~~~l~~~~~~~g~~ 290 (300)
T TIGR01037 246 FEDALEFLMAG-ASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEGFT 290 (300)
T ss_pred HHHHHHHHHcC-CCceeecHHHhcCchHHHHHHHHHHHHHHHcCCC
Confidence 99999999987 89988643322 2 2222 3455666677654
No 75
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.88 E-value=0.15 Score=50.95 Aligned_cols=119 Identities=17% Similarity=0.267 Sum_probs=79.4
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------Ch----hHHHHHHHHHHhh-C----CCcEEEE--eC-
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-H----PDSSFIL--DA- 236 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~d~~~l~avr~~-~----~~~~l~v--Da- 236 (409)
+++.++++++.||..+-|..+. ++ +--.+.+++||++ + +++.+.+ ..
T Consensus 146 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~ 225 (353)
T cd04735 146 FGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPE 225 (353)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcc
Confidence 4555677778999999998641 12 2235678899997 6 5665444 32
Q ss_pred ---CCCCCHHHHHHHHHHHHhCCCCCceee-------cCCC---CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHH
Q 015289 237 ---NEGYKPQEAVEVLEKLYEMGVTPVLFE-------QPVH---RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 303 (409)
Q Consensus 237 ---N~~w~~~~A~~~~~~L~~~~l~~~~iE-------eP~~---~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~ 303 (409)
.++++.++++++++.|++.++. ||+ .+.. ....+..+++++.. ..++||...=.+.++++..+
T Consensus 226 ~~~~~g~~~ee~~~i~~~L~~~GvD--~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~--~~~iPVi~~Ggi~t~e~ae~ 301 (353)
T cd04735 226 EPEEPGIRMEDTLALVDKLADKGLD--YLHISLWDFDRKSRRGRDDNQTIMELVKERI--AGRLPLIAVGSINTPDDALE 301 (353)
T ss_pred cccCCCCCHHHHHHHHHHHHHcCCC--EEEeccCccccccccCCcchHHHHHHHHHHh--CCCCCEEEECCCCCHHHHHH
Confidence 3467899999999999999874 665 1111 11223334443311 13689998878899999999
Q ss_pred HHHcCCCCEE
Q 015289 304 IVKGNLADVI 313 (409)
Q Consensus 304 ~i~~~a~div 313 (409)
+++.+ +|.|
T Consensus 302 ~l~~g-aD~V 310 (353)
T cd04735 302 ALETG-ADLV 310 (353)
T ss_pred HHHcC-CChH
Confidence 99885 7775
No 76
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=95.57 E-value=0.47 Score=47.11 Aligned_cols=119 Identities=13% Similarity=0.168 Sum_probs=81.2
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------C----hhHHHHHHHHHHhh-CCC-cEEEEeCC-----
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------N----LKEDIEVLRAIRAV-HPD-SSFILDAN----- 237 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~----~~~d~~~l~avr~~-~~~-~~l~vDaN----- 237 (409)
..+.++.+++.||..+.|..+. + .+--.+.+++||+. +++ +.+++-+.
T Consensus 154 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~ 233 (338)
T cd02933 154 FRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFND 233 (338)
T ss_pred HHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCC
Confidence 3555677778899999998762 1 22345788999986 554 34444332
Q ss_pred --CCCCHHHHHHHHHHHHhCCCCCceeec--CC-----CCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcC
Q 015289 238 --EGYKPQEAVEVLEKLYEMGVTPVLFEQ--PV-----HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308 (409)
Q Consensus 238 --~~w~~~~A~~~~~~L~~~~l~~~~iEe--P~-----~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~ 308 (409)
.+.+.++++++++.|++.++. +|+= .. ...+++..++++ +.+++||..-=.+. +.+..++++.+
T Consensus 234 ~~~~~~~ee~~~~~~~l~~~g~d--~i~vs~g~~~~~~~~~~~~~~~~ik----~~~~ipvi~~G~i~-~~~a~~~l~~g 306 (338)
T cd02933 234 MGDSDPEATFSYLAKELNKRGLA--YLHLVEPRVAGNPEDQPPDFLDFLR----KAFKGPLIAAGGYD-AESAEAALADG 306 (338)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCc--EEEEecCCCCCcccccchHHHHHHH----HHcCCCEEEECCCC-HHHHHHHHHcC
Confidence 135889999999999988753 5542 10 122344444454 35789999877776 88999999999
Q ss_pred CCCEEEe
Q 015289 309 LADVINI 315 (409)
Q Consensus 309 a~div~~ 315 (409)
.+|.|.+
T Consensus 307 ~~D~V~~ 313 (338)
T cd02933 307 KADLVAF 313 (338)
T ss_pred CCCEEEe
Confidence 8999854
No 77
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=95.34 E-value=0.58 Score=47.07 Aligned_cols=121 Identities=18% Similarity=0.150 Sum_probs=80.0
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------C----hhHHHHHHHHHHhh-CCCc--EEEEeCC----
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------N----LKEDIEVLRAIRAV-HPDS--SFILDAN---- 237 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~----~~~d~~~l~avr~~-~~~~--~l~vDaN---- 237 (409)
+++.++++++.||..+-|+.+. + .+--.+.+++||++ ++++ .+++-+.
T Consensus 152 f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~ 231 (370)
T cd02929 152 YVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIG 231 (370)
T ss_pred HHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcC
Confidence 4556677788999999998762 1 12345789999997 6775 4444332
Q ss_pred --CCCCHHHHHHHHHHHHhCCCC-----CceeecC-CC----CC--CHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHH
Q 015289 238 --EGYKPQEAVEVLEKLYEMGVT-----PVLFEQP-VH----RD--DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 303 (409)
Q Consensus 238 --~~w~~~~A~~~~~~L~~~~l~-----~~~iEeP-~~----~~--d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~ 303 (409)
+.++.++++++++.|++. +. .-+++.. .. +. .++..+++ ++..++||..-=.+.++.+..+
T Consensus 232 ~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~i----k~~~~~pvi~~G~i~~~~~~~~ 306 (370)
T cd02929 232 PGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFV----KQVTSKPVVGVGRFTSPDKMVE 306 (370)
T ss_pred CCCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHH----HHHCCCCEEEeCCCCCHHHHHH
Confidence 237899999999999873 11 0012211 10 11 12222233 3467899998888999999999
Q ss_pred HHHcCCCCEEEe
Q 015289 304 IVKGNLADVINI 315 (409)
Q Consensus 304 ~i~~~a~div~~ 315 (409)
+++.+.+|.|.+
T Consensus 307 ~l~~g~~D~V~~ 318 (370)
T cd02929 307 VVKSGILDLIGA 318 (370)
T ss_pred HHHcCCCCeeee
Confidence 999999999854
No 78
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=95.27 E-value=0.36 Score=44.28 Aligned_cols=97 Identities=11% Similarity=0.209 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCCCCC-HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~ 319 (409)
+.+++.+.++.|-+.|++ .+|=++...+ ++.++++++. .-++.|.+| ++.+.++++++++.|+ +++ +-|+.
T Consensus 18 ~~e~a~~~~~al~~~Gi~--~iEit~~t~~a~~~i~~l~~~---~~~~~vGAG-TVl~~~~a~~a~~aGA-~Fi-vsP~~ 89 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLR--VLEVTLRTPVALDAIRLLRKE---VPDALIGAG-TVLNPEQLRQAVDAGA-QFI-VSPGL 89 (204)
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEeCCCccHHHHHHHHHHH---CCCCEEEEE-eCCCHHHHHHHHHcCC-CEE-ECCCC
Confidence 799999999999999986 9999998654 3335555431 223555554 7899999999999985 776 22222
Q ss_pred CcHHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 015289 320 VGVLGALEIIEVVRASGLNLMIGGMVETRLA 350 (409)
Q Consensus 320 ~Gi~~~~~i~~~A~~~gi~~~~~~~~es~i~ 350 (409)
..++++.|+++|+++++|++.-|.+.
T Consensus 90 -----~~~v~~~~~~~~i~~iPG~~TptEi~ 115 (204)
T TIGR01182 90 -----TPELAKHAQDHGIPIIPGVATPSEIM 115 (204)
T ss_pred -----CHHHHHHHHHcCCcEECCCCCHHHHH
Confidence 25788999999999999998765544
No 79
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=94.96 E-value=0.65 Score=43.88 Aligned_cols=105 Identities=18% Similarity=0.191 Sum_probs=78.8
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCeEEEe-------cC-------CChhHHHHHHHHHHhhC---CCcEE--EEeCCCC--C
Q 015289 182 IPIVSPAEAAELASKYRKQGFTTLKLK-------VG-------KNLKEDIEVLRAIRAVH---PDSSF--ILDANEG--Y 240 (409)
Q Consensus 182 i~~~~~~~~~~~~~~~~~~Gf~~~KiK-------vG-------~~~~~d~~~l~avr~~~---~~~~l--~vDaN~~--w 240 (409)
.+..+++++.+.++++.+.|...+|+. .| .+.++-++++++++++. +++.| +.|+-.. .
T Consensus 78 ~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~ 157 (243)
T cd00377 78 TGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEE 157 (243)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCC
Confidence 344577778888889999999999992 22 25677788999999863 35544 5677544 6
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCC
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE 293 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE 293 (409)
+.++|++.++...+.|-...|+|-|. +.+.++++.+ +.+.||..--
T Consensus 158 ~~~eai~Ra~ay~~AGAD~v~v~~~~---~~~~~~~~~~----~~~~Pl~~~~ 203 (243)
T cd00377 158 GLDEAIERAKAYAEAGADGIFVEGLK---DPEEIRAFAE----APDVPLNVNM 203 (243)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCC---CHHHHHHHHh----cCCCCEEEEe
Confidence 89999999999999987767999777 5566777764 5678888753
No 80
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=94.82 E-value=0.69 Score=43.89 Aligned_cols=153 Identities=16% Similarity=0.135 Sum_probs=99.7
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCC--CcEEEEeCCCC--------------
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP--DSSFILDANEG-------------- 239 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~--~~~l~vDaN~~-------------- 239 (409)
+|+....++.+.+++ +++...|... +-+|...-++.+.++.+.+.++ .+.+.+|++..
T Consensus 75 ~pv~~~GGi~s~~d~----~~~~~~Ga~~--vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~g 148 (254)
T TIGR00735 75 IPLTVGGGIKSIEDV----DKLLRAGADK--VSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYG 148 (254)
T ss_pred CCEEEECCCCCHHHH----HHHHHcCCCE--EEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeC
Confidence 344445556666655 4445567554 4667555567788888887753 57889997532
Q ss_pred C---CHHHHHHHHHHHHhCCCCCceeecCCC------CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCC
Q 015289 240 Y---KPQEAVEVLEKLYEMGVTPVLFEQPVH------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 310 (409)
Q Consensus 240 w---~~~~A~~~~~~L~~~~l~~~~iEeP~~------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~ 310 (409)
| +..+..++++.+++.++...-+ ..+. .-|++.++++++ .+++||.+.=-+.++.++.++++.+.+
T Consensus 149 w~~~~~~~~~~~~~~l~~~G~~~iiv-t~i~~~g~~~g~~~~~~~~i~~----~~~ipvia~GGi~s~~di~~~~~~g~~ 223 (254)
T TIGR00735 149 GRESTGLDAVEWAKEVEKLGAGEILL-TSMDKDGTKSGYDLELTKAVSE----AVKIPVIASGGAGKPEHFYEAFTKGKA 223 (254)
T ss_pred CcccCCCCHHHHHHHHHHcCCCEEEE-eCcCcccCCCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcCCc
Confidence 2 1345578889999888651112 1122 234666666653 578999998889999999999998878
Q ss_pred CEEEeCCC-CCcHHHHHHHHHHHHHcCCcE
Q 015289 311 DVINIKLA-KVGVLGALEIIEVVRASGLNL 339 (409)
Q Consensus 311 div~~k~~-~~Gi~~~~~i~~~A~~~gi~~ 339 (409)
|.+.+--. .-|-.....+.+.++++|+++
T Consensus 224 dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 224 DAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred ceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 88765322 234223456678888888874
No 81
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.65 E-value=0.49 Score=43.35 Aligned_cols=99 Identities=14% Similarity=0.156 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCceeecCCCCCC-HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 240 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
-+.+++.+.++.|-+.|+. .+|=++...+ ++.++++++ +.-++-|.+| ++.+.++++++++.|+ +++.- |+
T Consensus 13 ~~~~~a~~ia~al~~gGi~--~iEit~~tp~a~~~I~~l~~---~~~~~~vGAG-TVl~~e~a~~ai~aGA-~FivS-P~ 84 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLP--AIEITLRTPAALDAIRAVAA---EVEEAIVGAG-TILNAKQFEDAAKAGS-RFIVS-PG 84 (201)
T ss_pred CCHHHHHHHHHHHHHCCCC--EEEEeCCCccHHHHHHHHHH---HCCCCEEeeE-eCcCHHHHHHHHHcCC-CEEEC-CC
Confidence 3789999999999999986 9999988554 333455543 1223444443 7899999999999985 77632 22
Q ss_pred CCcHHHHHHHHHHHHHcCCcEEEccCCchHHHH
Q 015289 319 KVGVLGALEIIEVVRASGLNLMIGGMVETRLAM 351 (409)
Q Consensus 319 ~~Gi~~~~~i~~~A~~~gi~~~~~~~~es~i~~ 351 (409)
.. .++++.|+++|++++||++.-|.+-.
T Consensus 85 ~~-----~~vi~~a~~~~i~~iPG~~TptEi~~ 112 (201)
T PRK06015 85 TT-----QELLAAANDSDVPLLPGAATPSEVMA 112 (201)
T ss_pred CC-----HHHHHHHHHcCCCEeCCCCCHHHHHH
Confidence 21 57789999999999999997666543
No 82
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.47 E-value=0.68 Score=43.10 Aligned_cols=100 Identities=15% Similarity=0.145 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCCCC-CHHHHHHhHHHhhccC-CCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRD-DWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~-d~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
+.++|.+.++.|-+.|+. .+|=.+... -.+.+++|++.++++. ++-|.+ =++.+.++++.+++.|+ +++.- |+
T Consensus 25 ~~~~a~~~~~al~~gGi~--~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGa-GTVl~~e~a~~a~~aGA-~FiVs-P~ 99 (222)
T PRK07114 25 DVEVAKKVIKACYDGGAR--VFEFTNRGDFAHEVFAELVKYAAKELPGMILGV-GSIVDAATAALYIQLGA-NFIVT-PL 99 (222)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEee-EeCcCHHHHHHHHHcCC-CEEEC-CC
Confidence 799999999999999986 899998754 3455566643222222 233433 37899999999999985 77632 22
Q ss_pred CCcHHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 015289 319 KVGVLGALEIIEVVRASGLNLMIGGMVETRLA 350 (409)
Q Consensus 319 ~~Gi~~~~~i~~~A~~~gi~~~~~~~~es~i~ 350 (409)
.. ..+++.|+++|++++||++.-|.+-
T Consensus 100 ~~-----~~v~~~~~~~~i~~iPG~~TpsEi~ 126 (222)
T PRK07114 100 FN-----PDIAKVCNRRKVPYSPGCGSLSEIG 126 (222)
T ss_pred CC-----HHHHHHHHHcCCCEeCCCCCHHHHH
Confidence 21 5778999999999999998755543
No 83
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=94.39 E-value=0.38 Score=46.80 Aligned_cols=111 Identities=17% Similarity=0.258 Sum_probs=76.8
Q ss_pred CCCcEEEEeC--CCC-CCHHHHHHHHHHHHhCCCCCceeecCCCC-CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHH
Q 015289 227 HPDSSFILDA--NEG-YKPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVK 302 (409)
Q Consensus 227 ~~~~~l~vDa--N~~-w~~~~A~~~~~~L~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~ 302 (409)
|.|..+.+-. |.. -+.+...+.+++|++.|-++ +==-++. ++.+.+++++ +++.+|+.+|=... ..-+.
T Consensus 17 GgdaPI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dI--VRvtv~~~e~A~A~~~Ik----~~~~vPLVaDiHf~-~rla~ 89 (361)
T COG0821 17 GGDAPIVVQSMTNTDTADVEATVAQIKALERAGCDI--VRVTVPDMEAAEALKEIK----QRLNVPLVADIHFD-YRLAL 89 (361)
T ss_pred cCCCceEEEeccCCCcccHHHHHHHHHHHHHcCCCE--EEEecCCHHHHHHHHHHH----HhCCCCEEEEeecc-HHHHH
Confidence 4455555432 221 24555667788888887653 3322332 3455566665 47899999998766 65566
Q ss_pred HHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCC
Q 015289 303 KIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV 345 (409)
Q Consensus 303 ~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~ 345 (409)
..++.+ +|-+.+.|+.+| -.+...+++.|+++|+++-+|-..
T Consensus 90 ~~~~~g-~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~ 132 (361)
T COG0821 90 EAAECG-VDKVRINPGNIGFKDRVREVVEAAKDKGIPIRIGVNA 132 (361)
T ss_pred HhhhcC-cceEEECCcccCcHHHHHHHHHHHHHcCCCEEEeccc
Confidence 666665 899999999999 567889999999999999886543
No 84
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=93.75 E-value=0.79 Score=43.73 Aligned_cols=99 Identities=16% Similarity=0.099 Sum_probs=69.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCCceeec--------------CCCCCCHHHHHHhHHHhhccCCCeEE--eCCCCCCHHHHH
Q 015289 239 GYKPQEAVEVLEKLYEMGVTPVLFEQ--------------PVHRDDWEGLGHVSHIAKDKFGVSVA--ADESCRSLDDVK 302 (409)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEe--------------P~~~~d~~~~~~l~~~~~~~~~ipIa--~dEs~~~~~~~~ 302 (409)
.|+.++.+++++.|.+.|+. .||= |...++++.++++++. ..+..++ ..-...+..++.
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~--~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~---~~~~~~~~~~~~~~~~~~~i~ 92 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVP--LIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEA---LKQAKLGVLLLPGIGTVDDLK 92 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCC--EEEeecCCCCCCcccccCCCCCChHHHHHHHHHh---ccCCEEEEEecCCccCHHHHH
Confidence 46789999999999999985 8887 5556677777777542 1234443 223345678888
Q ss_pred HHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEEcc
Q 015289 303 KIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGG 343 (409)
Q Consensus 303 ~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~~~ 343 (409)
+..+.+ +|.+++-....=.....++++.|++.|+.+.+.-
T Consensus 93 ~a~~~g-~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~ 132 (263)
T cd07943 93 MAADLG-VDVVRVATHCTEADVSEQHIGAARKLGMDVVGFL 132 (263)
T ss_pred HHHHcC-CCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEE
Confidence 888765 7988774332114567889999999999886643
No 85
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=93.71 E-value=8.1 Score=40.37 Aligned_cols=168 Identities=17% Similarity=0.218 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCCh--------hHHHHHHHHHHhhCCCcEEEEeCCC----CC---CHHHHHHHHH
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKNL--------KEDIEVLRAIRAVHPDSSFILDANE----GY---KPQEAVEVLE 250 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~--------~~d~~~l~avr~~~~~~~l~vDaN~----~w---~~~~A~~~~~ 250 (409)
+.+++...+..+.+.||..+.+--|... +.+.++|+++|+..++..|..=..+ +| ..+-...+++
T Consensus 25 ~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~ 104 (499)
T PRK12330 25 AMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVE 104 (499)
T ss_pred CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHH
Confidence 6788888888888899999998644322 3678999999999888776543322 23 3333345788
Q ss_pred HHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCC---CeEEe-CCCCCCHHHH----HHHHHcCCCCEEEeCCCCCc-
Q 015289 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG---VSVAA-DESCRSLDDV----KKIVKGNLADVINIKLAKVG- 321 (409)
Q Consensus 251 ~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~---ipIa~-dEs~~~~~~~----~~~i~~~a~div~~k~~~~G- 321 (409)
...+.++.+..|=+|+. |.+.+....+..++.-. .-|+. .-..++.+.+ +++.+.| +|.+.++=+- |
T Consensus 105 ~a~~~Gidi~RIfd~ln--dv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~G-ad~I~IkDta-Gl 180 (499)
T PRK12330 105 KSAENGMDVFRVFDALN--DPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMG-ADSICIKDMA-AL 180 (499)
T ss_pred HHHHcCCCEEEEEecCC--hHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcC-CCEEEeCCCc-cC
Confidence 88888887777888887 55555554433332211 13332 1235566654 3455566 6888877553 5
Q ss_pred --HHHHHHHHHHHH-Hc--CCcEEEccCCchHHHHHHHHHHHc
Q 015289 322 --VLGALEIIEVVR-AS--GLNLMIGGMVETRLAMGFAGHLSA 359 (409)
Q Consensus 322 --i~~~~~i~~~A~-~~--gi~~~~~~~~es~i~~~~~~hlaa 359 (409)
..++.++....+ +. ++++.+|+....+++. +..++|
T Consensus 181 l~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~--An~laA 221 (499)
T PRK12330 181 LKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTL--VSLMKA 221 (499)
T ss_pred CCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHH--HHHHHH
Confidence 335555554444 44 6899998865445444 334444
No 86
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.51 E-value=1.1 Score=41.42 Aligned_cols=97 Identities=12% Similarity=0.199 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCceeecCCCCCC-HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCC
Q 015289 239 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 317 (409)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~ 317 (409)
.-+.++|.+.++.|.+.|++ .||=++...+ .+.++++++ +..++-|.+| ++.+.++++..++.|+ +++.. |
T Consensus 23 ~~~~~~a~~i~~al~~~Gi~--~iEitl~~~~~~~~I~~l~~---~~p~~~IGAG-TVl~~~~a~~a~~aGA-~Fivs-P 94 (212)
T PRK05718 23 INKLEDAVPLAKALVAGGLP--VLEVTLRTPAALEAIRLIAK---EVPEALIGAG-TVLNPEQLAQAIEAGA-QFIVS-P 94 (212)
T ss_pred cCCHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHH---HCCCCEEEEe-eccCHHHHHHHHHcCC-CEEEC-C
Confidence 45799999999999999986 9999987654 333444543 2223555554 6778899999999985 77632 1
Q ss_pred CCCcHHHHHHHHHHHHHcCCcEEEccCCchH
Q 015289 318 AKVGVLGALEIIEVVRASGLNLMIGGMVETR 348 (409)
Q Consensus 318 ~~~Gi~~~~~i~~~A~~~gi~~~~~~~~es~ 348 (409)
|+.. .+++.|++++++++||++.-|.
T Consensus 95 ---~~~~--~vi~~a~~~~i~~iPG~~TptE 120 (212)
T PRK05718 95 ---GLTP--PLLKAAQEGPIPLIPGVSTPSE 120 (212)
T ss_pred ---CCCH--HHHHHHHHcCCCEeCCCCCHHH
Confidence 2233 7888999999999999985444
No 87
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=93.40 E-value=0.53 Score=46.75 Aligned_cols=126 Identities=22% Similarity=0.367 Sum_probs=79.1
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------Ch----hHHHHHHHHHHhh-CCCc--EEEEeCCC---
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDS--SFILDANE--- 238 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~d~~~l~avr~~-~~~~--~l~vDaN~--- 238 (409)
..+.++.+++.||..+-|+.+. ++ +--++.+++||+. +++. .+++-+..
T Consensus 151 f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~ 230 (341)
T PF00724_consen 151 FAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVE 230 (341)
T ss_dssp HHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSST
T ss_pred HHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccC
Confidence 3556677788999999999751 12 2346788999997 7775 66776654
Q ss_pred -CCCHHHHHHHHHHHHhCCCCCc------e--eecCCC--CCCHHHH--HHhHHHhhccCCCeEEeCCCCCCHHHHHHHH
Q 015289 239 -GYKPQEAVEVLEKLYEMGVTPV------L--FEQPVH--RDDWEGL--GHVSHIAKDKFGVSVAADESCRSLDDVKKIV 305 (409)
Q Consensus 239 -~w~~~~A~~~~~~L~~~~l~~~------~--iEeP~~--~~d~~~~--~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i 305 (409)
+++.++..++++.+++.++... + ...|.. +.+.... ..+++..++.+++||...-.+.+++...+++
T Consensus 231 ~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l 310 (341)
T PF00724_consen 231 GGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKAL 310 (341)
T ss_dssp TSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHHH
Confidence 3456777677777765432210 1 122322 1111100 0122223346789999998999998899999
Q ss_pred HcCCCCEEEe
Q 015289 306 KGNLADVINI 315 (409)
Q Consensus 306 ~~~a~div~~ 315 (409)
+.+.+|.|-+
T Consensus 311 ~~g~~DlV~~ 320 (341)
T PF00724_consen 311 EEGKADLVAM 320 (341)
T ss_dssp HTTSTSEEEE
T ss_pred hcCCceEeec
Confidence 9999999854
No 88
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=93.33 E-value=1.1 Score=41.20 Aligned_cols=95 Identities=15% Similarity=0.208 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCCCCC-HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEE-EeCCC
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI-NIKLA 318 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div-~~k~~ 318 (409)
+.++|....+.|-+-|+. -||=|+...+ .+..+++++. .-++-|.+| ++.+.+++.++++.|+ +++ .|...
T Consensus 23 ~~e~a~~~a~Ali~gGi~--~IEITl~sp~a~e~I~~l~~~---~p~~lIGAG-TVL~~~q~~~a~~aGa-~fiVsP~~~ 95 (211)
T COG0800 23 DVEEALPLAKALIEGGIP--AIEITLRTPAALEAIRALAKE---FPEALIGAG-TVLNPEQARQAIAAGA-QFIVSPGLN 95 (211)
T ss_pred CHHHHHHHHHHHHHcCCC--eEEEecCCCCHHHHHHHHHHh---CcccEEccc-cccCHHHHHHHHHcCC-CEEECCCCC
Confidence 699999999999999986 8999998665 4445666542 223444443 7889999999999996 554 33222
Q ss_pred CCcHHHHHHHHHHHHHcCCcEEEccCCchHH
Q 015289 319 KVGVLGALEIIEVVRASGLNLMIGGMVETRL 349 (409)
Q Consensus 319 ~~Gi~~~~~i~~~A~~~gi~~~~~~~~es~i 349 (409)
.++++.|..+|++++||++.-|.+
T Consensus 96 -------~ev~~~a~~~~ip~~PG~~TptEi 119 (211)
T COG0800 96 -------PEVAKAANRYGIPYIPGVATPTEI 119 (211)
T ss_pred -------HHHHHHHHhCCCcccCCCCCHHHH
Confidence 577899999999999999864443
No 89
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=93.28 E-value=0.98 Score=44.55 Aligned_cols=110 Identities=17% Similarity=0.267 Sum_probs=75.7
Q ss_pred CCCcEEEEeC--CCC-CCHHHHHHHHHHHHhCCCCCceeecCCCC-CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHH
Q 015289 227 HPDSSFILDA--NEG-YKPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVK 302 (409)
Q Consensus 227 ~~~~~l~vDa--N~~-w~~~~A~~~~~~L~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~ 302 (409)
|.+..+.|-. |.. -+.+..++.+++|++.|-+ .+==-++. ++.+.++++. +++.+|+.+|=. ++..-+.
T Consensus 23 Gg~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGce--iVRvav~~~~~a~al~~I~----~~~~iPlvADIH-Fd~~lAl 95 (360)
T PRK00366 23 GGDAPIVVQSMTNTDTADVEATVAQIKRLARAGCE--IVRVAVPDMEAAAALPEIK----KQLPVPLVADIH-FDYRLAL 95 (360)
T ss_pred CCCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCC--EEEEccCCHHHHHhHHHHH----HcCCCCEEEecC-CCHHHHH
Confidence 4455555542 222 2456667788888888864 34333332 2344455554 478999999866 5566666
Q ss_pred HHHHcCCCCEEEeCCCCCc-HH-HHHHHHHHHHHcCCcEEEccC
Q 015289 303 KIVKGNLADVINIKLAKVG-VL-GALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 303 ~~i~~~a~div~~k~~~~G-i~-~~~~i~~~A~~~gi~~~~~~~ 344 (409)
..++.| +|.+.+.|+.+| .. ...++++.|+++|+++-+|..
T Consensus 96 ~a~~~G-~~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN 138 (360)
T PRK00366 96 AAAEAG-ADALRINPGNIGKRDERVREVVEAAKDYGIPIRIGVN 138 (360)
T ss_pred HHHHhC-CCEEEECCCCCCchHHHHHHHHHHHHHCCCCEEEecC
Confidence 677766 799999999998 45 568899999999999988654
No 90
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=92.97 E-value=6.3 Score=37.10 Aligned_cols=170 Identities=23% Similarity=0.257 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCCh------hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCC
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKNL------KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTP 259 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~------~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~ 259 (409)
+.++..+.++.+.+.|+..+-+-.+... ..+.+.++.+++.+++..+.+.+..+ .+.++.+.+.++.
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~------~~~i~~a~~~g~~- 89 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR------EKGIERALEAGVD- 89 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc------hhhHHHHHhCCcC-
Confidence 6777778888888889888877666444 56778889999987777776655443 3456666677654
Q ss_pred ceeecCCCCC--------------CHHHHHHhHHHhhccCCCeEEeCC-CC----CCHHHH----HHHHHcCCCCEEEeC
Q 015289 260 VLFEQPVHRD--------------DWEGLGHVSHIAKDKFGVSVAADE-SC----RSLDDV----KKIVKGNLADVINIK 316 (409)
Q Consensus 260 ~~iEeP~~~~--------------d~~~~~~l~~~~~~~~~ipIa~dE-s~----~~~~~~----~~~i~~~a~div~~k 316 (409)
++-=+++.. +++...+..+.++ +.++.+...= .. .++..+ +.+.+.| +|.+.+.
T Consensus 90 -~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~-~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~~~i~l~ 166 (265)
T cd03174 90 -EVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAK-EAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAG-ADEISLK 166 (265)
T ss_pred -EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC-CCEEEec
Confidence 333333332 2333322222222 3466665442 33 333333 3344455 6887776
Q ss_pred CCCCc-HH--HHHHHHHH-HHHcC-CcEEEccCCchHHHHHHHHHHHccCCCCceec
Q 015289 317 LAKVG-VL--GALEIIEV-VRASG-LNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 368 (409)
Q Consensus 317 ~~~~G-i~--~~~~i~~~-A~~~g-i~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e 368 (409)
-+ .| .+ +..+++.. .+..+ +++.+|+....+ ++.+-.++|....+.++|
T Consensus 167 Dt-~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~g--la~an~laA~~aG~~~id 220 (265)
T cd03174 167 DT-VGLATPEEVAELVKALREALPDVPLGLHTHNTLG--LAVANSLAALEAGADRVD 220 (265)
T ss_pred hh-cCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCC--hHHHHHHHHHHcCCCEEE
Confidence 54 35 33 44555444 44455 777777754333 334444444333344544
No 91
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=92.81 E-value=2.2 Score=42.08 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHcCCCeEEEecC----------CChhHHHHHHHHHHhhCC----CcEEEEeCCCCCCHHHHHHHHHHH
Q 015289 187 PAEAAELASKYRKQGFTTLKLKVG----------KNLKEDIEVLRAIRAVHP----DSSFILDANEGYKPQEAVEVLEKL 252 (409)
Q Consensus 187 ~~~~~~~~~~~~~~Gf~~~KiKvG----------~~~~~d~~~l~avr~~~~----~~~l~vDaN~~w~~~~A~~~~~~L 252 (409)
.++.++.++++. .+...+-+.++ .+++.-.+.++++|+... ++.+.+=....|+.++..++++.+
T Consensus 147 ~~d~~~~~~~~~-~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l 225 (327)
T cd04738 147 VEDYVIGVRKLG-PYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVA 225 (327)
T ss_pred HHHHHHHHHHHH-hhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHH
Confidence 456666665543 34678888775 123344467788888532 466666666667777888899999
Q ss_pred HhCCCCCceee--c----------CCCCC-------------CHHHHHHhHHHhhccC--CCeEEeCCCCCCHHHHHHHH
Q 015289 253 YEMGVTPVLFE--Q----------PVHRD-------------DWEGLGHVSHIAKDKF--GVSVAADESCRSLDDVKKIV 305 (409)
Q Consensus 253 ~~~~l~~~~iE--e----------P~~~~-------------d~~~~~~l~~~~~~~~--~ipIa~dEs~~~~~~~~~~i 305 (409)
++.|+. +|. - |.... .++..++++ +.. ++||.+.=.+.+.+|+.+++
T Consensus 226 ~~aGad--~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~----~~~~~~ipIi~~GGI~t~~da~e~l 299 (327)
T cd04738 226 LEHGVD--GIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELY----KLTGGKIPIIGVGGISSGEDAYEKI 299 (327)
T ss_pred HHcCCc--EEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHH----HHhCCCCcEEEECCCCCHHHHHHHH
Confidence 988764 443 1 11100 022233333 344 68999888899999999999
Q ss_pred HcCCCCEEEe
Q 015289 306 KGNLADVINI 315 (409)
Q Consensus 306 ~~~a~div~~ 315 (409)
..| +|.+|+
T Consensus 300 ~aG-Ad~V~v 308 (327)
T cd04738 300 RAG-ASLVQL 308 (327)
T ss_pred HcC-CCHHhc
Confidence 877 688876
No 92
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=92.65 E-value=1.1 Score=43.93 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCCC-CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~ 319 (409)
+.+..++.+++|++.|-+ .+==-++. ++.+.++++. +.+.+|+.+|=... ..-....++.+ +|-+.+.|..
T Consensus 32 Dv~atv~QI~~L~~aGce--iVRvavp~~~~A~al~~I~----~~~~iPlVADIHFd-~~lAl~a~~~g-~dkiRINPGN 103 (346)
T TIGR00612 32 DIDSTVAQIRALEEAGCD--IVRVTVPDRESAAAFEAIK----EGTNVPLVADIHFD-YRLAALAMAKG-VAKVRINPGN 103 (346)
T ss_pred hHHHHHHHHHHHHHcCCC--EEEEcCCCHHHHHhHHHHH----hCCCCCEEEeeCCC-cHHHHHHHHhc-cCeEEECCCC
Confidence 456667788888888764 33333332 2344455554 47899999997754 33344455555 7999999999
Q ss_pred Cc-HHHHHHHHHHHHHcCCcEEEccC
Q 015289 320 VG-VLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 320 ~G-i~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
+| -....++++.|+++|+++-+|-.
T Consensus 104 ig~~e~v~~vv~~ak~~~ipIRIGVN 129 (346)
T TIGR00612 104 IGFRERVRDVVEKARDHGKAMRIGVN 129 (346)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEecC
Confidence 99 66789999999999999988654
No 93
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=92.63 E-value=4.8 Score=39.14 Aligned_cols=132 Identities=16% Similarity=0.146 Sum_probs=83.9
Q ss_pred eeeeeecCC-CHHHHHHHHHHHHHcCCCeEEEecC-C--------------ChhHHHHHHHHHHhhCCCcEEEEeCCCCC
Q 015289 177 TTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVG-K--------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 240 (409)
Q Consensus 177 ~~~~~i~~~-~~~~~~~~~~~~~~~Gf~~~KiKvG-~--------------~~~~d~~~l~avr~~~~~~~l~vDaN~~w 240 (409)
|+..++... +++++.+.++.+.+.|+..+-+.++ + +++.-.+.++++|+.. ++.+.+=-.-
T Consensus 101 p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~Pv~vKl~~-- 177 (299)
T cd02940 101 ILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV-KIPVIAKLTP-- 177 (299)
T ss_pred eEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc-CCCeEEECCC--
Confidence 445555444 8888888888776678999999887 1 1223344566666642 2344444332
Q ss_pred CHHHHHHHHHHHHhCCCCCcee----------------ecCCC-----------------CCCHHHHHHhHHHhhccC--
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLF----------------EQPVH-----------------RDDWEGLGHVSHIAKDKF-- 285 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~i----------------EeP~~-----------------~~d~~~~~~l~~~~~~~~-- 285 (409)
+.++..++++.+.+.++. .| +.|.. +-.++..++++ +..
T Consensus 178 ~~~~~~~~a~~~~~~Gad--gi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~----~~~~~ 251 (299)
T cd02940 178 NITDIREIARAAKEGGAD--GVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIA----RAPEP 251 (299)
T ss_pred CchhHHHHHHHHHHcCCC--EEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHH----HhcCC
Confidence 223556788888887754 22 22321 00134444444 356
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 286 GVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 286 ~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
.+||...=-+.+.+|+.+++..| +|.||+=-+
T Consensus 252 ~ipIig~GGI~~~~da~~~l~aG-A~~V~i~ta 283 (299)
T cd02940 252 GLPISGIGGIESWEDAAEFLLLG-ASVVQVCTA 283 (299)
T ss_pred CCcEEEECCCCCHHHHHHHHHcC-CChheEcee
Confidence 79999999999999999999977 588887543
No 94
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.41 E-value=1.9 Score=39.86 Aligned_cols=96 Identities=13% Similarity=0.107 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCCCCC-HHHHHHhHHHhhccC----CCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKF----GVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~----~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+.+++...++.|.+.|+. .+|=++...+ ++.++++++ +. ++-|.+| ++.+.++++++++.|+ +++.
T Consensus 23 ~~~~a~~~~~al~~~Gi~--~iEit~~~~~a~~~i~~l~~----~~~~~p~~~vGaG-TV~~~~~~~~a~~aGA-~Fiv- 93 (213)
T PRK06552 23 SKEEALKISLAVIKGGIK--AIEVTYTNPFASEVIKELVE----LYKDDPEVLIGAG-TVLDAVTARLAILAGA-QFIV- 93 (213)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEECCCccHHHHHHHHHH----HcCCCCCeEEeee-eCCCHHHHHHHHHcCC-CEEE-
Confidence 899999999999999986 8999988554 344555543 33 2444443 7899999999999985 7763
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 015289 316 KLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLA 350 (409)
Q Consensus 316 k~~~~Gi~~~~~i~~~A~~~gi~~~~~~~~es~i~ 350 (409)
-|+.. .++++.|+++|+++++|++..+.+-
T Consensus 94 sP~~~-----~~v~~~~~~~~i~~iPG~~T~~E~~ 123 (213)
T PRK06552 94 SPSFN-----RETAKICNLYQIPYLPGCMTVTEIV 123 (213)
T ss_pred CCCCC-----HHHHHHHHHcCCCEECCcCCHHHHH
Confidence 23222 5678889999999999998655543
No 95
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=92.05 E-value=14 Score=39.61 Aligned_cols=167 Identities=18% Similarity=0.239 Sum_probs=101.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCC--------hhHHHHHHHHHHhhCCCcEEEEeC---C----CCCCHHHHHHHHH
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKN--------LKEDIEVLRAIRAVHPDSSFILDA---N----EGYKPQEAVEVLE 250 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~--------~~~d~~~l~avr~~~~~~~l~vDa---N----~~w~~~~A~~~~~ 250 (409)
..+++...+..+.+.||..+.+--|.. -+.+.+|++++|+..|+..|-+=. | ..|..+-...+++
T Consensus 24 ~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~ 103 (596)
T PRK14042 24 RTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVK 103 (596)
T ss_pred CHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHH
Confidence 456777777888888999988765521 246799999999998877664322 2 2233344445888
Q ss_pred HHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCC----eEEe-CCCCCCHHHHHH----HHHcCCCCEEEeCCCCCc
Q 015289 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV----SVAA-DESCRSLDDVKK----IVKGNLADVINIKLAKVG 321 (409)
Q Consensus 251 ~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~i----pIa~-dEs~~~~~~~~~----~i~~~a~div~~k~~~~G 321 (409)
...+.|+.+..+=+++. |.+.+..-.+..++ .|. -||. .-..+++..+.+ +.+.| +|.+.++=+- |
T Consensus 104 ~a~~~Gidv~Rifd~ln--d~~n~~~~i~~~k~-~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~G-ad~I~IkDta-G 178 (596)
T PRK14042 104 LAVNNGVDVFRVFDALN--DARNLKVAIDAIKS-HKKHAQGAICYTTSPVHTLDNFLELGKKLAEMG-CDSIAIKDMA-G 178 (596)
T ss_pred HHHHcCCCEEEEcccCc--chHHHHHHHHHHHH-cCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcC-CCEEEeCCcc-c
Confidence 88999988777888775 44445443332232 232 2332 333677765533 44455 6888887543 5
Q ss_pred -H--HHHHHHH-HHHHHcCCcEEEccCCchHHHHHHHHHHHc
Q 015289 322 -V--LGALEII-EVVRASGLNLMIGGMVETRLAMGFAGHLSA 359 (409)
Q Consensus 322 -i--~~~~~i~-~~A~~~gi~~~~~~~~es~i~~~~~~hlaa 359 (409)
+ ..+.++. .+-++.++++.+|+....+++ .+..++|
T Consensus 179 ~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla--~an~laA 218 (596)
T PRK14042 179 LLTPTVTVELYAGLKQATGLPVHLHSHSTSGLA--SICHYEA 218 (596)
T ss_pred CCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcH--HHHHHHH
Confidence 3 3444444 334456899999886544444 4444444
No 96
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=91.79 E-value=3.8 Score=38.77 Aligned_cols=153 Identities=18% Similarity=0.184 Sum_probs=93.3
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhC--CCcEEEEeCCC------------CCC
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH--PDSSFILDANE------------GYK 241 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~--~~~~l~vDaN~------------~w~ 241 (409)
+|+....++.+.+++ +++...|... +-+|...-.+.+.++.+.+.+ ..+.+.+|+.. +|.
T Consensus 75 ipv~~~GGi~s~~~~----~~~l~~Ga~~--Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~ 148 (253)
T PRK02083 75 IPLTVGGGIRSVEDA----RRLLRAGADK--VSINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGR 148 (253)
T ss_pred CCEEeeCCCCCHHHH----HHHHHcCCCE--EEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCc
Confidence 344444455566554 3444567555 456654445667888888874 34677888643 132
Q ss_pred ---HHHHHHHHHHHHhCCCCCceeecCC------CCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCE
Q 015289 242 ---PQEAVEVLEKLYEMGVTPVLFEQPV------HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADV 312 (409)
Q Consensus 242 ---~~~A~~~~~~L~~~~l~~~~iEeP~------~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~di 312 (409)
.....++++.+.+.++. ..+=.++ ...|++.++++++ ..++||.+.=-+.+..|+.++++...+|.
T Consensus 149 ~~~~~~~~~~~~~~~~~g~~-~ii~~~i~~~g~~~g~d~~~i~~~~~----~~~ipvia~GGv~s~~d~~~~~~~~G~~g 223 (253)
T PRK02083 149 KPTGLDAVEWAKEVEELGAG-EILLTSMDRDGTKNGYDLELTRAVSD----AVNVPVIASGGAGNLEHFVEAFTEGGADA 223 (253)
T ss_pred eecCCCHHHHHHHHHHcCCC-EEEEcCCcCCCCCCCcCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHhCCccE
Confidence 11345677888887764 2222222 2246777777764 56899999888999999999998634666
Q ss_pred EEeC-CCCCcHHHHHHHHHHHHHcCCcE
Q 015289 313 INIK-LAKVGVLGALEIIEVVRASGLNL 339 (409)
Q Consensus 313 v~~k-~~~~Gi~~~~~i~~~A~~~gi~~ 339 (409)
+.+- .-.-|-....++.+.+++.|+++
T Consensus 224 vivg~al~~~~~~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 224 ALAASIFHFGEITIGELKAYLAEQGIPV 251 (253)
T ss_pred EeEhHHHHcCCCCHHHHHHHHHHCCCcc
Confidence 6553 22234223345567777888865
No 97
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=91.77 E-value=9 Score=34.00 Aligned_cols=130 Identities=11% Similarity=0.097 Sum_probs=84.1
Q ss_pred eeeeeeecCCC----HHHHHHHHHHHHHcCCCeEEEecC----CC--hhHHHHHHHHHHhhC-CCcEEEEeCCCCC--CH
Q 015289 176 ITTDITIPIVS----PAEAAELASKYRKQGFTTLKLKVG----KN--LKEDIEVLRAIRAVH-PDSSFILDANEGY--KP 242 (409)
Q Consensus 176 i~~~~~i~~~~----~~~~~~~~~~~~~~Gf~~~KiKvG----~~--~~~d~~~l~avr~~~-~~~~l~vDaN~~w--~~ 242 (409)
+|+...++..+ .++..+.++.+.+.|...+.+-.. .+ .+.-.+.++++++.. .++.+++..+-.+ +.
T Consensus 49 ~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~ 128 (201)
T cd00945 49 VPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTA 128 (201)
T ss_pred CeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCH
Confidence 45444555544 778888899999999999998643 11 234456677777763 5788888776443 56
Q ss_pred HHHHHHHHHHHhCCCCCceeecCCCC----CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCC
Q 015289 243 QEAVEVLEKLYEMGVTPVLFEQPVHR----DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 309 (409)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iEeP~~~----~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a 309 (409)
++..+..+.+++.++. ++-..... .+++.++++.+... .++||...-...++..+..++..|+
T Consensus 129 ~~~~~~~~~~~~~g~~--~iK~~~~~~~~~~~~~~~~~i~~~~~--~~~~v~~~gg~~~~~~~~~~~~~Ga 195 (201)
T cd00945 129 DEIAKAARIAAEAGAD--FIKTSTGFGGGGATVEDVKLMKEAVG--GRVGVKAAGGIKTLEDALAAIEAGA 195 (201)
T ss_pred HHHHHHHHHHHHhCCC--EEEeCCCCCCCCCCHHHHHHHHHhcc--cCCcEEEECCCCCHHHHHHHHHhcc
Confidence 7766677777777764 77665542 26777777764211 1456654334446777888888764
No 98
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=91.75 E-value=4.9 Score=37.72 Aligned_cols=131 Identities=18% Similarity=0.280 Sum_probs=92.2
Q ss_pred HHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCCC------CCCHH---HHHHHHHHHHhCCCCCce
Q 015289 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANE------GYKPQ---EAVEVLEKLYEMGVTPVL 261 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~------~w~~~---~A~~~~~~L~~~~l~~~~ 261 (409)
+.++++++.|..++=+ |.-.-+|-++++.+.+. +..+.+.+|++. +|.-. ++.++++++++.++. .+
T Consensus 88 ~~v~~ll~~G~~rVii--Gt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~-~i 164 (241)
T COG0106 88 EDVEALLDAGVARVII--GTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLA-HI 164 (241)
T ss_pred HHHHHHHHCCCCEEEE--ecceecCHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCC-eE
Confidence 4456678889877754 32224677888888887 456788899986 57432 456788888888764 23
Q ss_pred e------ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHc-CCCCEEEeCCCCCc-H--HHHHHHH
Q 015289 262 F------EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG-NLADVINIKLAKVG-V--LGALEII 329 (409)
Q Consensus 262 i------EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~-~a~div~~k~~~~G-i--~~~~~i~ 329 (409)
| |==+.--|++.+++|++ .+.+|+...=-+.+..|++.+-+. |...++.-+.-.-| + .++++..
T Consensus 165 i~TdI~~DGtl~G~n~~l~~~l~~----~~~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g~~~l~ea~~~~ 238 (241)
T COG0106 165 LYTDISRDGTLSGPNVDLVKELAE----AVDIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEGKFTLEEALACV 238 (241)
T ss_pred EEEecccccccCCCCHHHHHHHHH----HhCcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcCCCCHHHHHHHH
Confidence 3 44455567888999886 578999998889999999999888 67677766655555 3 4555443
No 99
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=91.50 E-value=7.8 Score=38.35 Aligned_cols=150 Identities=24% Similarity=0.272 Sum_probs=100.9
Q ss_pred eeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC----------------ChhHHHHHHHHHHhh-C-C-CcEEEEeCC
Q 015289 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAV-H-P-DSSFILDAN 237 (409)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~d~~~l~avr~~-~-~-~~~l~vDaN 237 (409)
|.-..++..+|+.+.+.++-....+ ..|-+..|- +++---+.|++++.. + | .++|++=
T Consensus 75 PLIvQf~~ndp~~ll~Aa~lv~~y~-D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~-- 151 (358)
T KOG2335|consen 75 PLIVQFGGNDPENLLKAARLVQPYC-DGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIF-- 151 (358)
T ss_pred ceEEEEcCCCHHHHHHHHHHhhhhc-CcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEec--
Confidence 5556677889998888776555555 888888872 222334567777775 2 3 2344442
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCcee-------ecC---CCCCCHHHHHHhHHHhhccCC-CeEEeCCCCCCHHHHHHHHH
Q 015289 238 EGYKPQEAVEVLEKLYEMGVTPVLF-------EQP---VHRDDWEGLGHVSHIAKDKFG-VSVAADESCRSLDDVKKIVK 306 (409)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~i-------EeP---~~~~d~~~~~~l~~~~~~~~~-ipIa~dEs~~~~~~~~~~i~ 306 (409)
=+.++.+++++.+++.|.. |+ ||= ..+-||+.++.+++ ... +||.+.=++.++.|..++++
T Consensus 152 --~d~~kTvd~ak~~e~aG~~--~ltVHGRtr~~kg~~~~pad~~~i~~v~~----~~~~ipviaNGnI~~~~d~~~~~~ 223 (358)
T KOG2335|consen 152 --VDLEKTVDYAKMLEDAGVS--LLTVHGRTREQKGLKTGPADWEAIKAVRE----NVPDIPVIANGNILSLEDVERCLK 223 (358)
T ss_pred --CcHHHHHHHHHHHHhCCCc--EEEEecccHHhcCCCCCCcCHHHHHHHHH----hCcCCcEEeeCCcCcHHHHHHHHH
Confidence 4567778888899998875 44 332 45668898998875 344 99999999999999999999
Q ss_pred cCCCCEEEeC------CCC-----Cc--HHH-HHHHHHHHHHcCC
Q 015289 307 GNLADVINIK------LAK-----VG--VLG-ALEIIEVVRASGL 337 (409)
Q Consensus 307 ~~a~div~~k------~~~-----~G--i~~-~~~i~~~A~~~gi 337 (409)
.-.+|.|..- |.. .+ ..+ ..+-..+|++++-
T Consensus 224 ~tG~dGVM~arglL~NPa~F~~~~~~~~~~~~~~~~l~~~~e~~g 268 (358)
T KOG2335|consen 224 YTGADGVMSARGLLYNPALFLTAGYGPTPWGCVEEYLDIAREFGG 268 (358)
T ss_pred HhCCceEEecchhhcCchhhccCCCCCCHHHHHHHHHHHHHHcCC
Confidence 5557887531 111 12 222 3466788888883
No 100
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=91.35 E-value=12 Score=36.26 Aligned_cols=139 Identities=13% Similarity=0.092 Sum_probs=86.6
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHc---CCCeEEEecCC-----------ChhHHHHHHHHHHhhCCCcEEEEeCCCCCC
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQ---GFTTLKLKVGK-----------NLKEDIEVLRAIRAVHPDSSFILDANEGYK 241 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~---Gf~~~KiKvG~-----------~~~~d~~~l~avr~~~~~~~l~vDaN~~w~ 241 (409)
.|+..++... ++++.+.+++..+. |...|-+.++- +++.-.+.++++|+.. ++.+.+=-.-.|+
T Consensus 92 ~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~-~iPv~vKl~p~~~ 169 (294)
T cd04741 92 KPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAY-SIPVGVKTPPYTD 169 (294)
T ss_pred CeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhc-CCCEEEEeCCCCC
Confidence 4556666665 88888877777654 68899998871 3444455667777753 3445555555567
Q ss_pred HHHHHHHHHHHHhC--CCCC------------cee--ecCCC--CC----------CHHHHHHhHHHhhccC--CCeEEe
Q 015289 242 PQEAVEVLEKLYEM--GVTP------------VLF--EQPVH--RD----------DWEGLGHVSHIAKDKF--GVSVAA 291 (409)
Q Consensus 242 ~~~A~~~~~~L~~~--~l~~------------~~i--EeP~~--~~----------d~~~~~~l~~~~~~~~--~ipIa~ 291 (409)
.++..++++.+.+. ++.- .-+ +.|.- .. .+..++.+++ ++++. ++||.+
T Consensus 170 ~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~-~~~~~~~~ipIig 248 (294)
T cd04741 170 PAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRT-FRRLLPSEIQIIG 248 (294)
T ss_pred HHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHH-HHHhcCCCCCEEE
Confidence 66666777777766 2210 001 22211 11 2233444433 23345 499999
Q ss_pred CCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 292 DESCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 292 dEs~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
-=-+.+.+|+.+++..| +|.||+=-+
T Consensus 249 ~GGI~s~~da~e~l~aG-A~~Vqv~ta 274 (294)
T cd04741 249 VGGVLDGRGAFRMRLAG-ASAVQVGTA 274 (294)
T ss_pred eCCCCCHHHHHHHHHcC-CCceeEchh
Confidence 88999999999999977 599988544
No 101
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=91.28 E-value=1.5 Score=39.92 Aligned_cols=99 Identities=20% Similarity=0.258 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCceeecCCCCCC-HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 240 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
-+.+++.+.++.|-+-|+. .+|=.+...+ .+.++++++. .-++-|.+| ++.+.++++++++.|+ +++.- |.
T Consensus 17 ~~~~~a~~~~~al~~gGi~--~iEiT~~t~~a~~~I~~l~~~---~p~~~vGAG-TV~~~e~a~~a~~aGA-~FivS-P~ 88 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIR--AIEITLRTPNALEAIEALRKE---FPDLLVGAG-TVLTAEQAEAAIAAGA-QFIVS-PG 88 (196)
T ss_dssp SSGGGHHHHHHHHHHTT----EEEEETTSTTHHHHHHHHHHH---HTTSEEEEE-S--SHHHHHHHHHHT--SEEEE-SS
T ss_pred CCHHHHHHHHHHHHHCCCC--EEEEecCCccHHHHHHHHHHH---CCCCeeEEE-eccCHHHHHHHHHcCC-CEEEC-CC
Confidence 4678899999999999986 8999998655 3334445442 334555554 7899999999999995 66532 11
Q ss_pred CCcHHHHHHHHHHHHHcCCcEEEccCCchHHHH
Q 015289 319 KVGVLGALEIIEVVRASGLNLMIGGMVETRLAM 351 (409)
Q Consensus 319 ~~Gi~~~~~i~~~A~~~gi~~~~~~~~es~i~~ 351 (409)
. .-++++.|+++|++++||++.-|.+-.
T Consensus 89 ~-----~~~v~~~~~~~~i~~iPG~~TptEi~~ 116 (196)
T PF01081_consen 89 F-----DPEVIEYAREYGIPYIPGVMTPTEIMQ 116 (196)
T ss_dssp -------HHHHHHHHHHTSEEEEEESSHHHHHH
T ss_pred C-----CHHHHHHHHHcCCcccCCcCCHHHHHH
Confidence 1 257789999999999999997666543
No 102
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=91.24 E-value=8.5 Score=37.93 Aligned_cols=158 Identities=16% Similarity=0.227 Sum_probs=95.4
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC---Ch--------hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHH
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK---NL--------KEDIEVLRAIRAVHPDSSFILDANEGYKPQE 244 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~---~~--------~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~ 244 (409)
.|+..++...++++..+.++.+.+.|+..+-+.++. +. +.-.+.++++|+.. ++.+.+=-...++ +
T Consensus 100 ~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~-~iPv~vKl~p~~~--~ 176 (325)
T cd04739 100 IPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV-TIPVAVKLSPFFS--A 176 (325)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc-CCCEEEEcCCCcc--C
Confidence 455666666778888888888877899999999862 11 11246677887753 3455555443333 4
Q ss_pred HHHHHHHHHhCCCCCc-----eeecCCCCC------C---------HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHH
Q 015289 245 AVEVLEKLYEMGVTPV-----LFEQPVHRD------D---------WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304 (409)
Q Consensus 245 A~~~~~~L~~~~l~~~-----~iEeP~~~~------d---------~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~ 304 (409)
..++++.+++.++.-. +..-+...+ . ...++.+++ +++..++||.+.=-+.+.+|+.++
T Consensus 177 ~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~-v~~~~~ipIig~GGI~s~~Da~e~ 255 (325)
T cd04739 177 LAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAI-LSGRVKASLAASGGVHDAEDVVKY 255 (325)
T ss_pred HHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHH-HHcccCCCEEEECCCCCHHHHHHH
Confidence 5567777777654211 111111000 0 011222322 234568999998899999999999
Q ss_pred HHcCCCCEEEeCCCCC--c---HHHH-HHHHHHHHHcCCc
Q 015289 305 VKGNLADVINIKLAKV--G---VLGA-LEIIEVVRASGLN 338 (409)
Q Consensus 305 i~~~a~div~~k~~~~--G---i~~~-~~i~~~A~~~gi~ 338 (409)
+..| +|.||+=-+-. | +... ..+.++.+++|++
T Consensus 256 l~aG-A~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~~ 294 (325)
T cd04739 256 LLAG-ADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHGYE 294 (325)
T ss_pred HHcC-CCeeEEehhhhhcCchHHHHHHHHHHHHHHHcCCC
Confidence 9876 59998864321 4 2222 3456777777765
No 103
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=91.18 E-value=23 Score=37.97 Aligned_cols=168 Identities=19% Similarity=0.261 Sum_probs=102.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCC--C------hhHHHHHHHHHHhhCCCcEEEEeCCC----CCC--HHHH-HHHH
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGK--N------LKEDIEVLRAIRAVHPDSSFILDANE----GYK--PQEA-VEVL 249 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~--~------~~~d~~~l~avr~~~~~~~l~vDaN~----~w~--~~~A-~~~~ 249 (409)
.+.+++...+..+.+.||..+-+--|. + -+.+.++++++|+..|+..|..=+.+ +|+ ++++ ..++
T Consensus 24 ~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v 103 (593)
T PRK14040 24 LRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFV 103 (593)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHH
Confidence 366788888888888899999884331 1 14679999999999888776433342 454 3444 4578
Q ss_pred HHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCe----EEe-CCCCCCHHHH----HHHHHcCCCCEEEeCCCCC
Q 015289 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS----VAA-DESCRSLDDV----KKIVKGNLADVINIKLAKV 320 (409)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ip----Ia~-dEs~~~~~~~----~~~i~~~a~div~~k~~~~ 320 (409)
+...+.++....|-+++. |++.+....+.++ +.+.- |+. +...++...+ +.+.+.| +|.+.++=+-
T Consensus 104 ~~a~~~Gid~~rifd~ln--d~~~~~~ai~~ak-~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~G-ad~i~i~Dt~- 178 (593)
T PRK14040 104 ERAVKNGMDVFRVFDAMN--DPRNLETALKAVR-KVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMG-VDSLCIKDMA- 178 (593)
T ss_pred HHHHhcCCCEEEEeeeCC--cHHHHHHHHHHHH-HcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcC-CCEEEECCCC-
Confidence 888888887667777776 4554544333333 23443 442 2334444433 3344455 6888887554
Q ss_pred c---HHHHHHHH-HHHHHcCCcEEEccCCchHHHHHHHHHHHc
Q 015289 321 G---VLGALEII-EVVRASGLNLMIGGMVETRLAMGFAGHLSA 359 (409)
Q Consensus 321 G---i~~~~~i~-~~A~~~gi~~~~~~~~es~i~~~~~~hlaa 359 (409)
| ..++.+++ .+-++.++++.+|+...++++ .+..++|
T Consensus 179 G~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA--~An~laA 219 (593)
T PRK14040 179 GLLKPYAAYELVSRIKKRVDVPLHLHCHATTGLS--TATLLKA 219 (593)
T ss_pred CCcCHHHHHHHHHHHHHhcCCeEEEEECCCCchH--HHHHHHH
Confidence 4 33455544 444556899999886555544 4444444
No 104
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=91.04 E-value=5.8 Score=36.77 Aligned_cols=126 Identities=16% Similarity=0.209 Sum_probs=78.7
Q ss_pred eeecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhC-CCcEEEEeCC------CCCC---HHHHHHHH
Q 015289 180 ITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILDAN------EGYK---PQEAVEVL 249 (409)
Q Consensus 180 ~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~-~~~~l~vDaN------~~w~---~~~A~~~~ 249 (409)
...++.+.+++ +++.+.|.. ++=+|...-.+.+.++.+.+.+ ..+.+.+|.. .+|. .....+++
T Consensus 79 ~~GGI~~~ed~----~~~~~~Ga~--~vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~ 152 (233)
T PRK00748 79 VGGGIRSLETV----EALLDAGVS--RVIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLA 152 (233)
T ss_pred EcCCcCCHHHH----HHHHHcCCC--EEEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHH
Confidence 33345555554 445556765 3456754445555666665654 3477888874 2341 22335677
Q ss_pred HHHHhCCCC-Ccee----ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 250 EKLYEMGVT-PVLF----EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 250 ~~L~~~~l~-~~~i----EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+.+++.+.. +... ++....-|++.++++++ .+++||...=-+.+..|++++.+.+.+|.+.+
T Consensus 153 ~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~----~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 153 KRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAA----AVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 778776653 1111 23333346787888764 56799999888999999999999887787754
No 105
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=91.03 E-value=5 Score=37.48 Aligned_cols=122 Identities=21% Similarity=0.343 Sum_probs=77.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhh-CC-CcEEEEeCC------CCCCHH---HHHHHHHH
Q 015289 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HP-DSSFILDAN------EGYKPQ---EAVEVLEK 251 (409)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~-~~-~~~l~vDaN------~~w~~~---~A~~~~~~ 251 (409)
++.+.+++ +.+.+.|... +-+|...-.|.+.+..+++. +. .+.+.+|+. .+|..+ ...++++.
T Consensus 84 Gi~~~~~~----~~~~~~Ga~~--v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~ 157 (241)
T PRK13585 84 GIRSAEDA----ASLLDLGVDR--VILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKR 157 (241)
T ss_pred CcCCHHHH----HHHHHcCCCE--EEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHH
Confidence 34455443 4455677764 56675444566778888887 43 345678875 345321 33567777
Q ss_pred HHhCCCCCcee-----ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 252 LYEMGVTPVLF-----EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 252 L~~~~l~~~~i-----EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+++.++....+ +.....-+++.++++++ ...+||.+.=.+.+++++.++.+.| ++.+.+
T Consensus 158 ~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~----~~~iPvia~GGI~~~~di~~~~~~G-a~gv~v 221 (241)
T PRK13585 158 FEELGAGSILFTNVDVEGLLEGVNTEPVKELVD----SVDIPVIASGGVTTLDDLRALKEAG-AAGVVV 221 (241)
T ss_pred HHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 77777642222 22223346777777764 5689999999999999999987776 566654
No 106
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.90 E-value=13 Score=34.31 Aligned_cols=141 Identities=12% Similarity=0.202 Sum_probs=99.0
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCc-EEEEeCCCCCCHHHHHHHHHHHHhCCCCCce
Q 015289 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (409)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~-~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (409)
-..+.++..+.++.+.+-|++.+.+-+.. ..-.+.++++++.+++. ++.+=+..-.|.+|+.+. .+.|.. |
T Consensus 20 r~~~~~~a~~~~~al~~~Gi~~iEit~~~--~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a----~~aGA~--F 91 (213)
T PRK06552 20 RGESKEEALKISLAVIKGGIKAIEVTYTN--PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLA----ILAGAQ--F 91 (213)
T ss_pred ECCCHHHHHHHHHHHHHCCCCEEEEECCC--ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHH----HHcCCC--E
Confidence 34578888999999999999999998853 34667888888876542 688999999999987544 346654 7
Q ss_pred eecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CcHHHHHHHHHHHHHcC-CcE
Q 015289 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRASG-LNL 339 (409)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~-~Gi~~~~~i~~~A~~~g-i~~ 339 (409)
+=-|.-..+. .+.++ +.++|+.- -+.++.++.+..+.| +|++.+=|.. .|..... .+..-+. +++
T Consensus 92 ivsP~~~~~v---~~~~~----~~~i~~iP--G~~T~~E~~~A~~~G-ad~vklFPa~~~G~~~ik---~l~~~~p~ip~ 158 (213)
T PRK06552 92 IVSPSFNRET---AKICN----LYQIPYLP--GCMTVTEIVTALEAG-SEIVKLFPGSTLGPSFIK---AIKGPLPQVNV 158 (213)
T ss_pred EECCCCCHHH---HHHHH----HcCCCEEC--CcCCHHHHHHHHHcC-CCEEEECCcccCCHHHHH---HHhhhCCCCEE
Confidence 7778764433 33332 46889887 477899999999877 5999986644 3533322 2233344 888
Q ss_pred EEccC
Q 015289 340 MIGGM 344 (409)
Q Consensus 340 ~~~~~ 344 (409)
++.+-
T Consensus 159 ~atGG 163 (213)
T PRK06552 159 MVTGG 163 (213)
T ss_pred EEECC
Confidence 87553
No 107
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=90.79 E-value=20 Score=37.22 Aligned_cols=168 Identities=20% Similarity=0.251 Sum_probs=101.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCCh--------hHHHHHHHHHHhhCCCcEEE---EeCC-CCCCH---HHHHHHHH
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKNL--------KEDIEVLRAIRAVHPDSSFI---LDAN-EGYKP---QEAVEVLE 250 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~--------~~d~~~l~avr~~~~~~~l~---vDaN-~~w~~---~~A~~~~~ 250 (409)
+.+++...+..+.+.||..+.+--|... +.+.++++++|+..|+..|. .=.| =+|.. +-...|++
T Consensus 33 ~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~ 112 (468)
T PRK12581 33 SIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFIS 112 (468)
T ss_pred CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHH
Confidence 5678888888888889999987655222 46899999999987776543 2223 23442 43455788
Q ss_pred HHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCe----EE-eCCCCCCHHH----HHHHHHcCCCCEEEeCCCCCc
Q 015289 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS----VA-ADESCRSLDD----VKKIVKGNLADVINIKLAKVG 321 (409)
Q Consensus 251 ~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ip----Ia-~dEs~~~~~~----~~~~i~~~a~div~~k~~~~G 321 (409)
...+.|+.+..+=+.+. |.+.++...+.+++ .|.- |+ .+...++..- ++++.+.| +|.+.++=+- |
T Consensus 113 ~a~~~Gidi~Rifd~ln--d~~n~~~ai~~ak~-~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~G-ad~I~IkDta-G 187 (468)
T PRK12581 113 LSAQNGIDVFRIFDALN--DPRNIQQALRAVKK-TGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMG-ADSICIKDMA-G 187 (468)
T ss_pred HHHHCCCCEEEEcccCC--CHHHHHHHHHHHHH-cCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcC-CCEEEECCCC-C
Confidence 88899988777778776 55656554443332 2322 22 2223343332 34455566 6888877553 5
Q ss_pred ---HHHHHHHHHHHH-HcCCcEEEccCCchHHHHHHHHHHHcc
Q 015289 322 ---VLGALEIIEVVR-ASGLNLMIGGMVETRLAMGFAGHLSAG 360 (409)
Q Consensus 322 ---i~~~~~i~~~A~-~~gi~~~~~~~~es~i~~~~~~hlaaa 360 (409)
...+.++....+ ..++++.+|+....++ +.+..++|.
T Consensus 188 ~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~Gl--A~An~laAi 228 (468)
T PRK12581 188 ILTPKAAKELVSGIKAMTNLPLIVHTHATSGI--SQMTYLAAV 228 (468)
T ss_pred CcCHHHHHHHHHHHHhccCCeEEEEeCCCCcc--HHHHHHHHH
Confidence 334555544434 4568888888644444 444444443
No 108
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=90.71 E-value=5.9 Score=37.23 Aligned_cols=117 Identities=21% Similarity=0.240 Sum_probs=77.5
Q ss_pred HHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhC-CCcEEEEeCC------CCCC--HHHHHHHHHHHHhCCCCCcee
Q 015289 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILDAN------EGYK--PQEAVEVLEKLYEMGVTPVLF 262 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~-~~~~l~vDaN------~~w~--~~~A~~~~~~L~~~~l~~~~i 262 (409)
+.++++...|.. |+-+|...-+|.+.++.+-+.+ ..+.+.+|.. .+|+ ..+..++++.+++.++. ..+
T Consensus 88 edv~~~l~~Ga~--kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~-~ii 164 (241)
T PRK14024 88 ESLEAALATGCA--RVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCS-RYV 164 (241)
T ss_pred HHHHHHHHCCCC--EEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCC-EEE
Confidence 345566777876 4566654445666666666553 4455667763 2464 23457788889988864 122
Q ss_pred ------ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHc--CCCCEEEe
Q 015289 263 ------EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG--NLADVINI 315 (409)
Q Consensus 263 ------EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~--~a~div~~ 315 (409)
++-....|++.++++.+ ..++||.+.=-+.+..|+.++.+. ..+|.+.+
T Consensus 165 v~~~~~~g~~~G~d~~~i~~i~~----~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~i 221 (241)
T PRK14024 165 VTDVTKDGTLTGPNLELLREVCA----RTDAPVVASGGVSSLDDLRALAELVPLGVEGAIV 221 (241)
T ss_pred EEeecCCCCccCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEE
Confidence 55555557888888864 578999998889999999988643 24676654
No 109
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=90.62 E-value=17 Score=37.48 Aligned_cols=169 Identities=21% Similarity=0.287 Sum_probs=97.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCCh--------hHHHHHHHHHHhhCCCcEEE--EeC-C-CCCC--HHH-HHHHH
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGKNL--------KEDIEVLRAIRAVHPDSSFI--LDA-N-EGYK--PQE-AVEVL 249 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~--------~~d~~~l~avr~~~~~~~l~--vDa-N-~~w~--~~~-A~~~~ 249 (409)
.+.++..+.+..+.+.||..+-+--|... +.+.++++.+++..++..+. +=+ | -+|. +++ ..+++
T Consensus 23 ~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v 102 (448)
T PRK12331 23 MTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFV 102 (448)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHH
Confidence 35677888888888899999998533211 24788999999987877764 222 2 2453 233 34577
Q ss_pred HHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCe----EE-eCCCCCCHHHH----HHHHHcCCCCEEEeCCCC-
Q 015289 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS----VA-ADESCRSLDDV----KKIVKGNLADVINIKLAK- 319 (409)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ip----Ia-~dEs~~~~~~~----~~~i~~~a~div~~k~~~- 319 (409)
++..+.++...-+-.++. |...+.+..+.++ +.+.. |+ .+...++...+ +++.+.| +|.+.++=+-
T Consensus 103 ~~A~~~Gvd~irif~~ln--d~~n~~~~v~~ak-~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~G-ad~I~i~Dt~G 178 (448)
T PRK12331 103 QKSVENGIDIIRIFDALN--DVRNLETAVKATK-KAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMG-ADSICIKDMAG 178 (448)
T ss_pred HHHHHCCCCEEEEEEecC--cHHHHHHHHHHHH-HcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC-CCEEEEcCCCC
Confidence 887888876455566665 3444444333333 23433 22 22234444433 4455566 6887776443
Q ss_pred Cc-HHHHHHHHH-HHHHcCCcEEEccCCchHHHHHHHHHHHc
Q 015289 320 VG-VLGALEIIE-VVRASGLNLMIGGMVETRLAMGFAGHLSA 359 (409)
Q Consensus 320 ~G-i~~~~~i~~-~A~~~gi~~~~~~~~es~i~~~~~~hlaa 359 (409)
+. ...+.+++. +-++.++++.+|+....+++ .+-.++|
T Consensus 179 ~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA--~AN~laA 218 (448)
T PRK12331 179 ILTPYVAYELVKRIKEAVTVPLEVHTHATSGIA--EMTYLKA 218 (448)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcH--HHHHHHH
Confidence 22 344555544 44456899998886544444 3434444
No 110
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=90.57 E-value=14 Score=33.97 Aligned_cols=139 Identities=15% Similarity=0.241 Sum_probs=93.3
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee
Q 015289 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 262 (409)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i 262 (409)
-..++++..+.++.+.+-|++.+.+..-. ....+.++.+++.+++ .+.+=+..-.+.+++... .+.|.+ |+
T Consensus 17 r~~~~~~~~~~~~a~~~gGi~~iEvt~~~--~~~~~~i~~l~~~~~~-~~~iGaGTV~~~~~~~~a----~~aGA~--fi 87 (206)
T PRK09140 17 RGITPDEALAHVGALIEAGFRAIEIPLNS--PDPFDSIAALVKALGD-RALIGAGTVLSPEQVDRL----ADAGGR--LI 87 (206)
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEeCCC--ccHHHHHHHHHHHcCC-CcEEeEEecCCHHHHHHH----HHcCCC--EE
Confidence 34578888999999999999999998643 2455678888887653 367778888888876443 335543 66
Q ss_pred ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CcHHHHHHHHHHHHHc--CCcE
Q 015289 263 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRAS--GLNL 339 (409)
Q Consensus 263 EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~-~Gi~~~~~i~~~A~~~--gi~~ 339 (409)
=-|.. |.+-.+. + +..++++..| +.++.++.+..+.| +|++.+=++. +|+.... .+.+.. .+++
T Consensus 88 vsp~~--~~~v~~~-~----~~~~~~~~~G--~~t~~E~~~A~~~G-ad~vk~Fpa~~~G~~~l~---~l~~~~~~~ipv 154 (206)
T PRK09140 88 VTPNT--DPEVIRR-A----VALGMVVMPG--VATPTEAFAALRAG-AQALKLFPASQLGPAGIK---ALRAVLPPDVPV 154 (206)
T ss_pred ECCCC--CHHHHHH-H----HHCCCcEEcc--cCCHHHHHHHHHcC-CCEEEECCCCCCCHHHHH---HHHhhcCCCCeE
Confidence 66654 3322222 2 2468888887 99999999999887 5999874432 4533322 333344 5888
Q ss_pred EEcc
Q 015289 340 MIGG 343 (409)
Q Consensus 340 ~~~~ 343 (409)
+.-+
T Consensus 155 vaiG 158 (206)
T PRK09140 155 FAVG 158 (206)
T ss_pred EEEC
Confidence 7644
No 111
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=90.49 E-value=11 Score=37.21 Aligned_cols=134 Identities=17% Similarity=0.230 Sum_probs=86.0
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC----------Ch-hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHH
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------NL-KEDIEVLRAIRAVHPDSSFILDANEGYKPQE 244 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------~~-~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~ 244 (409)
+|+..++...++++..+.++.+.+.|+..+-+.++. +. +.-.+.++++|+.. ++.+.+=-+..++ +
T Consensus 102 ~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~-~iPV~vKl~p~~~--~ 178 (334)
T PRK07565 102 IPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV-SIPVAVKLSPYFS--N 178 (334)
T ss_pred CcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc-CCcEEEEeCCCch--h
Confidence 456667767788888888888888899999997651 11 12345667777753 4566666544443 4
Q ss_pred HHHHHHHHHhCCCCCceeec--CCC--CCCH------------------HHHHHhHHHhhccCCCeEEeCCCCCCHHHHH
Q 015289 245 AVEVLEKLYEMGVTPVLFEQ--PVH--RDDW------------------EGLGHVSHIAKDKFGVSVAADESCRSLDDVK 302 (409)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEe--P~~--~~d~------------------~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~ 302 (409)
..++++.+++.++. .|-- -+. .-|+ ..++.+++ +++..++||.+.=-+.+..|+.
T Consensus 179 ~~~~a~~l~~~G~d--gI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~-~~~~~~ipIig~GGI~s~~Da~ 255 (334)
T PRK07565 179 LANMAKRLDAAGAD--GLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAI-LSGRVGADLAATTGVHDAEDVI 255 (334)
T ss_pred HHHHHHHHHHcCCC--eEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHH-HHhhcCCCEEEECCCCCHHHHH
Confidence 45678888887754 3311 000 0111 11222322 2345689999988999999999
Q ss_pred HHHHcCCCCEEEeC
Q 015289 303 KIVKGNLADVINIK 316 (409)
Q Consensus 303 ~~i~~~a~div~~k 316 (409)
+++..| +|.||+=
T Consensus 256 e~l~aG-A~~V~v~ 268 (334)
T PRK07565 256 KMLLAG-ADVVMIA 268 (334)
T ss_pred HHHHcC-CCceeee
Confidence 999987 6999875
No 112
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=90.48 E-value=7.5 Score=37.75 Aligned_cols=131 Identities=15% Similarity=0.131 Sum_probs=87.4
Q ss_pred eeeeee--ecCCCHHHHHHHHHHHHHcCCCeEEEe--c-----C-------CChhHHHHHHHHHHhh--CCCcEE--EEe
Q 015289 176 ITTDIT--IPIVSPAEAAELASKYRKQGFTTLKLK--V-----G-------KNLKEDIEVLRAIRAV--HPDSSF--ILD 235 (409)
Q Consensus 176 i~~~~~--i~~~~~~~~~~~~~~~~~~Gf~~~KiK--v-----G-------~~~~~d~~~l~avr~~--~~~~~l--~vD 235 (409)
+|+.+. -|..++.++...++++.+.|-..+-|. + | .+.++=+++|++++++ ++++-| |.|
T Consensus 79 iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTD 158 (292)
T PRK11320 79 LPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTD 158 (292)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecC
Confidence 454433 345588888888999999999888762 2 2 2455667889988886 455544 568
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCC--H-HHHHHHHHcCCCCE
Q 015289 236 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS--L-DDVKKIVKGNLADV 312 (409)
Q Consensus 236 aN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~--~-~~~~~~i~~~a~di 312 (409)
+-.....++|++.++...+.|-...|+|-|- +.+.++++.+ +.+.|+...-...+ + ..+.++-+.| +..
T Consensus 159 a~~~~g~deAI~Ra~aY~eAGAD~ifi~~~~---~~~~i~~~~~----~~~~Pl~~n~~~~~~~p~~s~~~L~~lG-v~~ 230 (292)
T PRK11320 159 ALAVEGLDAAIERAQAYVEAGADMIFPEAMT---ELEMYRRFAD----AVKVPILANITEFGATPLFTTEELASAG-VAM 230 (292)
T ss_pred cccccCHHHHHHHHHHHHHcCCCEEEecCCC---CHHHHHHHHH----hcCCCEEEEeccCCCCCCCCHHHHHHcC-CcE
Confidence 8766779999999999999987777998765 4566677764 46778855332211 1 1344555555 455
Q ss_pred EE
Q 015289 313 IN 314 (409)
Q Consensus 313 v~ 314 (409)
+.
T Consensus 231 v~ 232 (292)
T PRK11320 231 VL 232 (292)
T ss_pred EE
Confidence 43
No 113
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=90.33 E-value=7.2 Score=37.74 Aligned_cols=109 Identities=15% Similarity=0.140 Sum_probs=78.2
Q ss_pred eeeeee--ecCCCHHHHHHHHHHHHHcCCCeEEEe-------cC-------CChhHHHHHHHHHHhh--CCCcEE--EEe
Q 015289 176 ITTDIT--IPIVSPAEAAELASKYRKQGFTTLKLK-------VG-------KNLKEDIEVLRAIRAV--HPDSSF--ILD 235 (409)
Q Consensus 176 i~~~~~--i~~~~~~~~~~~~~~~~~~Gf~~~KiK-------vG-------~~~~~d~~~l~avr~~--~~~~~l--~vD 235 (409)
+|+... -|..++.++...++++.+.|-..+-|. .| .+.++=+++|++++++ .+++-| |.|
T Consensus 74 iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTD 153 (285)
T TIGR02317 74 LPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTD 153 (285)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcC
Confidence 444333 355678888888899999998888762 23 1456667889999886 345433 578
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEe
Q 015289 236 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 291 (409)
Q Consensus 236 aN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~ 291 (409)
+-.....++|++.++...+.|-...|+|-|.. .+.++++.+ +++.|+..
T Consensus 154 a~~~~g~deAI~Ra~ay~~AGAD~vfi~g~~~---~e~i~~~~~----~i~~Pl~~ 202 (285)
T TIGR02317 154 ARAVEGLDAAIERAKAYVEAGADMIFPEALTS---LEEFRQFAK----AVKVPLLA 202 (285)
T ss_pred cccccCHHHHHHHHHHHHHcCCCEEEeCCCCC---HHHHHHHHH----hcCCCEEE
Confidence 88777899999999999998877679987654 455666664 45678854
No 114
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=90.17 E-value=4.7 Score=39.94 Aligned_cols=102 Identities=17% Similarity=0.149 Sum_probs=70.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCceeec--------------CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHH
Q 015289 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQ--------------PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 303 (409)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEe--------------P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~ 303 (409)
..|+.++.+++++.|.+.|+. .||= +....+++.++++.+..+ +..+-+.+.=...+..+++.
T Consensus 19 ~~f~~~~~~~ia~~Ld~aGV~--~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~-~~~~~~ll~pg~~~~~dl~~ 95 (333)
T TIGR03217 19 HQFTIEQVRAIAAALDEAGVD--AIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVK-RAKVAVLLLPGIGTVHDLKA 95 (333)
T ss_pred CcCCHHHHHHHHHHHHHcCCC--EEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCC-CCEEEEEeccCccCHHHHHH
Confidence 346899999999999999985 8998 444567777777765322 22222223222457788988
Q ss_pred HHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccC
Q 015289 304 IVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 304 ~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
+.+.+ +|.+++-.. +. ...+.+.+++|++.|..+...-|
T Consensus 96 a~~~g-vd~iri~~~-~~e~d~~~~~i~~ak~~G~~v~~~l~ 135 (333)
T TIGR03217 96 AYDAG-ARTVRVATH-CTEADVSEQHIGMARELGMDTVGFLM 135 (333)
T ss_pred HHHCC-CCEEEEEec-cchHHHHHHHHHHHHHcCCeEEEEEE
Confidence 88876 688876432 33 55678899999999999865433
No 115
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=90.13 E-value=12 Score=36.94 Aligned_cols=116 Identities=15% Similarity=0.302 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHcCC--CeEEEecC-CChhHHHHHHHHHHhhCCCcEEEE-eCCCCCCHHHHHHHHHHHHhCCCCCc----
Q 015289 189 EAAELASKYRKQGF--TTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVEVLEKLYEMGVTPV---- 260 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf--~~~KiKvG-~~~~~d~~~l~avr~~~~~~~l~v-DaN~~w~~~~A~~~~~~L~~~~l~~~---- 260 (409)
+..+++.++++.|. ..+-+.+- ...+.-.+.++.+|+..|+..+++ |.. |.++|... .+.|+...
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~---t~e~a~~l----~~aGad~i~vg~ 169 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG---TPEAVREL----ENAGADATKVGI 169 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC---CHHHHHHH----HHcCcCEEEECC
Confidence 44577888888866 88888765 334556667999999999988887 665 77766444 44554311
Q ss_pred -----eeecCCC---CCCH--HHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 261 -----LFEQPVH---RDDW--EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 261 -----~iEeP~~---~~d~--~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
.+|++.. ..|| ..++++++ ...+||.+|-.+.+..|+.+++..| +|.+.+-
T Consensus 170 ~~G~~~~t~~~~g~~~~~w~l~ai~~~~~----~~~ipVIAdGGI~~~~Di~KaLa~G-A~aV~vG 230 (326)
T PRK05458 170 GPGKVCITKIKTGFGTGGWQLAALRWCAK----AARKPIIADGGIRTHGDIAKSIRFG-ATMVMIG 230 (326)
T ss_pred CCCcccccccccCCCCCccHHHHHHHHHH----HcCCCEEEeCCCCCHHHHHHHHHhC-CCEEEec
Confidence 1365432 2333 34555553 3579999999999999999999997 4887664
No 116
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=90.09 E-value=3 Score=41.48 Aligned_cols=125 Identities=10% Similarity=0.120 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecC----------CChhHHHHHHHHHHhhCC----CcEEEEeCCCCCCHHHHHHHHHH
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVG----------KNLKEDIEVLRAIRAVHP----DSSFILDANEGYKPQEAVEVLEK 251 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG----------~~~~~d~~~l~avr~~~~----~~~l~vDaN~~w~~~~A~~~~~~ 251 (409)
+.++.++.++++. .+...+-+.++ .+.+.-.+.+++||+... ++.+.+=-+-.++.++..++++.
T Consensus 155 ~~~d~~~~~~~~~-~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~ 233 (344)
T PRK05286 155 AVDDYLICLEKLY-PYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADL 233 (344)
T ss_pred CHHHHHHHHHHHH-hhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHH
Confidence 4677777777653 36788888775 133445567888998743 47777777766888888899999
Q ss_pred HHhCCCCCc-----e-----eecCC--------C-----CCCHHHHHHhHHHhhccC--CCeEEeCCCCCCHHHHHHHHH
Q 015289 252 LYEMGVTPV-----L-----FEQPV--------H-----RDDWEGLGHVSHIAKDKF--GVSVAADESCRSLDDVKKIVK 306 (409)
Q Consensus 252 L~~~~l~~~-----~-----iEeP~--------~-----~~d~~~~~~l~~~~~~~~--~ipIa~dEs~~~~~~~~~~i~ 306 (409)
+++.++.-. + ++.+. + +-.++..++++ +.. ++||.+-=-+.+.+|+.+++.
T Consensus 234 l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~----~~~~~~ipIig~GGI~s~eda~e~l~ 309 (344)
T PRK05286 234 ALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLY----KELGGRLPIIGVGGIDSAEDAYEKIR 309 (344)
T ss_pred HHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHH----HHhCCCCCEEEECCCCCHHHHHHHHH
Confidence 998765311 1 11110 0 00122233333 344 689998888999999999998
Q ss_pred cCCCCEEEeC
Q 015289 307 GNLADVINIK 316 (409)
Q Consensus 307 ~~a~div~~k 316 (409)
.| +|.||+=
T Consensus 310 aG-Ad~V~v~ 318 (344)
T PRK05286 310 AG-ASLVQIY 318 (344)
T ss_pred cC-CCHHHHH
Confidence 77 6887653
No 117
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=90.02 E-value=6.1 Score=36.71 Aligned_cols=123 Identities=18% Similarity=0.212 Sum_probs=76.1
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhC-CC-cEEEEeCCCC------------CC---HHHH
Q 015289 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PD-SSFILDANEG------------YK---PQEA 245 (409)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~-~~-~~l~vDaN~~------------w~---~~~A 245 (409)
+..+.+++ +++.+.|+..+ -+|...-.+.+.++.+.+.+ .+ +.+.+|.... |+ ..++
T Consensus 82 gi~~~~d~----~~~~~~G~~~v--ilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~ 155 (232)
T TIGR03572 82 GIRSLEDA----KKLLSLGADKV--SINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDP 155 (232)
T ss_pred CCCCHHHH----HHHHHcCCCEE--EEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCH
Confidence 44455544 33455687654 55644445667777777764 33 5667886542 32 3345
Q ss_pred HHHHHHHHhCCCCCcee-----ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 246 VEVLEKLYEMGVTPVLF-----EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 246 ~~~~~~L~~~~l~~~~i-----EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
.++++.+++.++...-+ +.-....+++.++++++ ..++||.+.=.+.+..++.++++...+|.+.+
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~----~~~ipvia~GGi~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSD----AVSIPVIALGGAGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 78888898887641111 11122335777777754 57899999988999999999555445677654
No 118
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=89.94 E-value=15 Score=39.28 Aligned_cols=168 Identities=22% Similarity=0.303 Sum_probs=101.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCC--------hhHHHHHHHHHHhhCCCcEEEEeCCC----CCC--HHH-HHHHH
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGKN--------LKEDIEVLRAIRAVHPDSSFILDANE----GYK--PQE-AVEVL 249 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~--------~~~d~~~l~avr~~~~~~~l~vDaN~----~w~--~~~-A~~~~ 249 (409)
.+.++....+..+.+.||..+-+--|.. -+.+.++++.+|+..++..+..=.++ +|+ +++ ...++
T Consensus 23 ~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v 102 (592)
T PRK09282 23 MRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFV 102 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHH
Confidence 3567788888888888999998853321 13678999999998888777654332 343 233 34578
Q ss_pred HHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCC-----CCCCHHHH----HHHHHcCCCCEEEeCCCCC
Q 015289 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-----SCRSLDDV----KKIVKGNLADVINIKLAKV 320 (409)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE-----s~~~~~~~----~~~i~~~a~div~~k~~~~ 320 (409)
++..+.++....+-.++. |...+....+..+ +.+.-+.... ..+++..+ +++.+.| +|.+.++=+-
T Consensus 103 ~~A~~~Gvd~irif~~ln--d~~n~~~~i~~ak-~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~G-ad~I~i~Dt~- 177 (592)
T PRK09282 103 EKAAENGIDIFRIFDALN--DVRNMEVAIKAAK-KAGAHVQGTISYTTSPVHTIEKYVELAKELEEMG-CDSICIKDMA- 177 (592)
T ss_pred HHHHHCCCCEEEEEEecC--hHHHHHHHHHHHH-HcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC-CCEEEECCcC-
Confidence 888888877556666665 4555554433333 2344443222 23444433 4455555 6888877554
Q ss_pred c---HHHHHHHHHH-HHHcCCcEEEccCCchHHHHHHHHHHHc
Q 015289 321 G---VLGALEIIEV-VRASGLNLMIGGMVETRLAMGFAGHLSA 359 (409)
Q Consensus 321 G---i~~~~~i~~~-A~~~gi~~~~~~~~es~i~~~~~~hlaa 359 (409)
| ..++.++... -++.++++.+|+...++++ .+..++|
T Consensus 178 G~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla--~An~laA 218 (592)
T PRK09282 178 GLLTPYAAYELVKALKEEVDLPVQLHSHCTSGLA--PMTYLKA 218 (592)
T ss_pred CCcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcH--HHHHHHH
Confidence 4 3445555544 4556888888886555544 3444444
No 119
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=89.88 E-value=14 Score=37.09 Aligned_cols=106 Identities=13% Similarity=0.094 Sum_probs=65.5
Q ss_pred HHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee-----ecC
Q 015289 191 AELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF-----EQP 265 (409)
Q Consensus 191 ~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i-----EeP 265 (409)
.+.++.+.+.++.-+ +++.-.++++++|+.+=-+++++ +...+.++++.+.+.++....+ +|=
T Consensus 102 a~aa~~~~e~~~~~~------~p~l~~~ii~~vr~a~VtvkiRl------~~~~~~e~a~~l~eAGad~I~ihgrt~~q~ 169 (369)
T TIGR01304 102 AAATRLLQELHAAPL------KPELLGERIAEVRDSGVITAVRV------SPQNAREIAPIVVKAGADLLVIQGTLVSAE 169 (369)
T ss_pred HHHHHHHHHcCCCcc------ChHHHHHHHHHHHhcceEEEEec------CCcCHHHHHHHHHHCCCCEEEEeccchhhh
Confidence 333444444454432 34555677888888642244555 2345677888888888752222 110
Q ss_pred C--CCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015289 266 V--HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314 (409)
Q Consensus 266 ~--~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~ 314 (409)
. ...++..+.++.+ ..++||..+. +.+..+.+++++.| +|+|.
T Consensus 170 ~~sg~~~p~~l~~~i~----~~~IPVI~G~-V~t~e~A~~~~~aG-aDgV~ 214 (369)
T TIGR01304 170 HVSTSGEPLNLKEFIG----ELDVPVIAGG-VNDYTTALHLMRTG-AAGVI 214 (369)
T ss_pred ccCCCCCHHHHHHHHH----HCCCCEEEeC-CCCHHHHHHHHHcC-CCEEE
Confidence 0 1235666666654 4689998844 89999999999976 79987
No 120
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=89.87 E-value=9.5 Score=35.68 Aligned_cols=130 Identities=20% Similarity=0.211 Sum_probs=82.7
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhC--CCcEEEEeCC-----------CCC--
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH--PDSSFILDAN-----------EGY-- 240 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~--~~~~l~vDaN-----------~~w-- 240 (409)
+|+....++.+.+++ +++.+.|...+ -+|...-++.+.+..+.+.+ ..+.+.+|+. .+|
T Consensus 72 ~pv~~~GGI~s~~d~----~~~l~~G~~~v--~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~ 145 (243)
T cd04731 72 IPLTVGGGIRSLEDA----RRLLRAGADKV--SINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRK 145 (243)
T ss_pred CCEEEeCCCCCHHHH----HHHHHcCCceE--EECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCce
Confidence 344455556666555 33445676654 45654445666666666654 2478889965 224
Q ss_pred -CHHHHHHHHHHHHhCCCCCcee---e-c-CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015289 241 -KPQEAVEVLEKLYEMGVTPVLF---E-Q-PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314 (409)
Q Consensus 241 -~~~~A~~~~~~L~~~~l~~~~i---E-e-P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~ 314 (409)
+..+..++++.+++.++.-.-+ . + .....+++.++++.+ ..++||.+.=.+.++.++.++++...+|.+.
T Consensus 146 ~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~----~~~~pvia~GGi~~~~di~~~l~~~g~dgv~ 221 (243)
T cd04731 146 PTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSS----AVNIPVIASGGAGKPEHFVEAFEEGGADAAL 221 (243)
T ss_pred ecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHHHhCCCCEEE
Confidence 2445678888898887641111 1 1 122346776777653 5689999988999999999999975578776
Q ss_pred e
Q 015289 315 I 315 (409)
Q Consensus 315 ~ 315 (409)
+
T Consensus 222 v 222 (243)
T cd04731 222 A 222 (243)
T ss_pred E
Confidence 5
No 121
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=89.69 E-value=3.8 Score=39.12 Aligned_cols=103 Identities=21% Similarity=0.342 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCceeec--CC-CCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCC---CCE
Q 015289 239 GYKPQEAVEVLEKLYEMGVTPVLFEQ--PV-HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL---ADV 312 (409)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEe--P~-~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a---~di 312 (409)
.|+.++.+++++.|.+.|+. .||= |. +++|++.++.+.+. ..++.+..= .-.+..+++.+.+.+. +|.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~--~iEvg~~~~~~~~~~~~~~l~~~---~~~~~~~~l-~r~~~~~v~~a~~~~~~~~~~~ 89 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVD--VIEAGFPAASPGDFEAVKRIARE---VLNAEICGL-ARAVKKDIDAAAEALKPAKVDR 89 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEEeCCCCCHHHHHHHHHHHHh---CCCCEEEEE-ccCCHhhHHHHHHhCCCCCCCE
Confidence 46899999999999999985 8886 54 45667777776542 234555431 1135677888887663 687
Q ss_pred EEeCCC----------CCc----HHHHHHHHHHHHHcCCcEEEccCCch
Q 015289 313 INIKLA----------KVG----VLGALEIIEVVRASGLNLMIGGMVET 347 (409)
Q Consensus 313 v~~k~~----------~~G----i~~~~~i~~~A~~~gi~~~~~~~~es 347 (409)
+.+=.+ +.+ +....++++.|++.|+.+.++++..+
T Consensus 90 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~ 138 (268)
T cd07940 90 IHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDAT 138 (268)
T ss_pred EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCC
Confidence 766321 111 23456789999999999998877544
No 122
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.65 E-value=16 Score=33.42 Aligned_cols=140 Identities=14% Similarity=0.195 Sum_probs=99.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceee
Q 015289 184 IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 263 (409)
Q Consensus 184 ~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE 263 (409)
..++++..+.++.+.+-|++.+.+-... ..-.+.++.+++.+|+ +.|=+..-.|.+++.+.. +.|.+ |+=
T Consensus 12 ~~~~~~a~~ia~al~~gGi~~iEit~~t--p~a~~~I~~l~~~~~~--~~vGAGTVl~~e~a~~ai----~aGA~--Fiv 81 (201)
T PRK06015 12 IDDVEHAVPLARALAAGGLPAIEITLRT--PAALDAIRAVAAEVEE--AIVGAGTILNAKQFEDAA----KAGSR--FIV 81 (201)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCC--ccHHHHHHHHHHHCCC--CEEeeEeCcCHHHHHHHH----HcCCC--EEE
Confidence 4578888999999999999999998863 3456678888887775 778888999999875544 46654 888
Q ss_pred cCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-Cc-HHHHHHHHHHHHHcCCcEEE
Q 015289 264 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VG-VLGALEIIEVVRASGLNLMI 341 (409)
Q Consensus 264 eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~-~G-i~~~~~i~~~A~~~gi~~~~ 341 (409)
-|.-..+. + +.++ +.++|..-| +.++.++...++.| +|++.+=|.- +| ..-...+..-- -++++++
T Consensus 82 SP~~~~~v--i-~~a~----~~~i~~iPG--~~TptEi~~A~~~G-a~~vK~FPa~~~GG~~yikal~~pl--p~~~l~p 149 (201)
T PRK06015 82 SPGTTQEL--L-AAAN----DSDVPLLPG--AATPSEVMALREEG-YTVLKFFPAEQAGGAAFLKALSSPL--AGTFFCP 149 (201)
T ss_pred CCCCCHHH--H-HHHH----HcCCCEeCC--CCCHHHHHHHHHCC-CCEEEECCchhhCCHHHHHHHHhhC--CCCcEEe
Confidence 88754332 2 3232 468888874 78999999999998 4998888864 44 33222222222 3788888
Q ss_pred ccCC
Q 015289 342 GGMV 345 (409)
Q Consensus 342 ~~~~ 345 (409)
.+-+
T Consensus 150 tGGV 153 (201)
T PRK06015 150 TGGI 153 (201)
T ss_pred cCCC
Confidence 6644
No 123
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=89.63 E-value=16 Score=33.46 Aligned_cols=141 Identities=14% Similarity=0.263 Sum_probs=100.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee
Q 015289 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 262 (409)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i 262 (409)
-..++++..+.++.+.+.|++.+.+-... ..-.+.++.+++.+|+ +.+=+..-.|.+++.+..+ .|-+ |+
T Consensus 15 r~~~~e~a~~~~~al~~~Gi~~iEit~~t--~~a~~~i~~l~~~~~~--~~vGAGTVl~~~~a~~a~~----aGA~--Fi 84 (204)
T TIGR01182 15 RIDDVDDALPLAKALIEGGLRVLEVTLRT--PVALDAIRLLRKEVPD--ALIGAGTVLNPEQLRQAVD----AGAQ--FI 84 (204)
T ss_pred ecCCHHHHHHHHHHHHHcCCCEEEEeCCC--ccHHHHHHHHHHHCCC--CEEEEEeCCCHHHHHHHHH----cCCC--EE
Confidence 34578889999999999999999998853 4556778888888875 7788899999998755443 6654 88
Q ss_pred ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CcHHHHHH-HHHHHHHcCCcEE
Q 015289 263 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALE-IIEVVRASGLNLM 340 (409)
Q Consensus 263 EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~-~Gi~~~~~-i~~~A~~~gi~~~ 340 (409)
=-|....+ ..+.++ +.++|..- -+.++.++...++.| +|++.+=|.- .|....++ +..-- -+++++
T Consensus 85 vsP~~~~~---v~~~~~----~~~i~~iP--G~~TptEi~~A~~~G-a~~vKlFPA~~~GG~~yikal~~pl--p~i~~~ 152 (204)
T TIGR01182 85 VSPGLTPE---LAKHAQ----DHGIPIIP--GVATPSEIMLALELG-ITALKLFPAEVSGGVKMLKALAGPF--PQVRFC 152 (204)
T ss_pred ECCCCCHH---HHHHHH----HcCCcEEC--CCCCHHHHHHHHHCC-CCEEEECCchhcCCHHHHHHHhccC--CCCcEE
Confidence 66765322 333332 56888888 588999999999998 5998888876 45233332 22222 378888
Q ss_pred EccCC
Q 015289 341 IGGMV 345 (409)
Q Consensus 341 ~~~~~ 345 (409)
+.+-+
T Consensus 153 ptGGV 157 (204)
T TIGR01182 153 PTGGI 157 (204)
T ss_pred ecCCC
Confidence 86644
No 124
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=89.22 E-value=24 Score=34.87 Aligned_cols=127 Identities=19% Similarity=0.280 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCc-EEEEeCCCCCCHHHHHHHHHHHHhCCCCCceee
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 263 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~-~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE 263 (409)
.++++-+++++......+..+-+-+|.. +.|.++++++-+..++. -|.+|...+++... +++++.+++.-
T Consensus 79 ~~~e~~~~fv~~~~~~~~~~~~vavG~~-~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~-i~~ik~ik~~~------- 149 (346)
T PRK05096 79 YSVEEWAAFVNNSSADVLKHVMVSTGTS-DADFEKTKQILALSPALNFICIDVANGYSEHF-VQFVAKAREAW------- 149 (346)
T ss_pred CCHHHHHHHHHhccccccceEEEEecCC-HHHHHHHHHHHhcCCCCCEEEEECCCCcHHHH-HHHHHHHHHhC-------
Confidence 4677777777766555556666677743 48899999999864333 46789999988654 46666555520
Q ss_pred cCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC-----------CCCCc---HHHHHHHH
Q 015289 264 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK-----------LAKVG---VLGALEII 329 (409)
Q Consensus 264 eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k-----------~~~~G---i~~~~~i~ 329 (409)
.+++|.+| ++.+.+..+.+++.| +|++.+- ++-+| ++...+.+
T Consensus 150 ---------------------P~~~vIaG-NV~T~e~a~~Li~aG-AD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a 206 (346)
T PRK05096 150 ---------------------PDKTICAG-NVVTGEMVEELILSG-ADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECA 206 (346)
T ss_pred ---------------------CCCcEEEe-cccCHHHHHHHHHcC-CCEEEEcccCCccccCccccccChhHHHHHHHHH
Confidence 12455544 467778888899887 5887522 12234 44557788
Q ss_pred HHHHHcCCcEEEcc
Q 015289 330 EVVRASGLNLMIGG 343 (409)
Q Consensus 330 ~~A~~~gi~~~~~~ 343 (409)
+.|+++|++++-.+
T Consensus 207 ~~a~~~gvpiIADG 220 (346)
T PRK05096 207 DAAHGLGGQIVSDG 220 (346)
T ss_pred HHHHHcCCCEEecC
Confidence 99999999998644
No 125
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=89.19 E-value=7 Score=37.14 Aligned_cols=114 Identities=16% Similarity=0.193 Sum_probs=75.2
Q ss_pred HHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCC--CcEEEEeCCCC-----------C---CHHHHHHHHHHHHhCCC
Q 015289 194 ASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP--DSSFILDANEG-----------Y---KPQEAVEVLEKLYEMGV 257 (409)
Q Consensus 194 ~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~--~~~l~vDaN~~-----------w---~~~~A~~~~~~L~~~~l 257 (409)
++++...|+..+ -+|...-++.+.++.+.+.++ .+.+.+|...+ | +.....++++.++++++
T Consensus 89 ~~~l~~~G~~~v--vigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~ 166 (258)
T PRK01033 89 AKKIFSLGVEKV--SINTAALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGA 166 (258)
T ss_pred HHHHHHCCCCEE--EEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCC
Confidence 444556687654 456434456677777777642 46788897543 3 12234677888888775
Q ss_pred CCcee------ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015289 258 TPVLF------EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314 (409)
Q Consensus 258 ~~~~i------EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~ 314 (409)
. ..+ ++....-|++.++++++ ..++||.+.=-+.+.+|+.++++...+|.+.
T Consensus 167 ~-~ii~~~i~~~G~~~G~d~~~i~~~~~----~~~ipvIasGGv~s~eD~~~l~~~~GvdgVi 224 (258)
T PRK01033 167 G-EILLNSIDRDGTMKGYDLELLKSFRN----ALKIPLIALGGAGSLDDIVEAILNLGADAAA 224 (258)
T ss_pred C-EEEEEccCCCCCcCCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHHHHCCCCEEE
Confidence 4 222 34444457888888764 5789999999999999999999544466654
No 126
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=89.16 E-value=6.5 Score=37.58 Aligned_cols=102 Identities=18% Similarity=0.181 Sum_probs=68.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCceeecCCCCC------------CHHHHHHhHHHhhccCCCeEEe--CCCCCCHHHHHH
Q 015289 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD------------DWEGLGHVSHIAKDKFGVSVAA--DESCRSLDDVKK 303 (409)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~------------d~~~~~~l~~~~~~~~~ipIa~--dEs~~~~~~~~~ 303 (409)
-.|+.++.+++++.|++.|+. +||==++.. +.+.++++.+..+ .+.+++. .-...+..++..
T Consensus 15 ~~f~~~~~~~ia~~L~~~GVd--~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~l~~ 90 (266)
T cd07944 15 WDFGDEFVKAIYRALAAAGID--YVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK--GNTKIAVMVDYGNDDIDLLEP 90 (266)
T ss_pred ccCCHHHHHHHHHHHHHCCCC--EEEeecCCCCccccCCCccCCCHHHHHHHHhhhc--cCCEEEEEECCCCCCHHHHHH
Confidence 357899999999999999986 999765422 1455666654211 1344443 333345667776
Q ss_pred HHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEEccC
Q 015289 304 IVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 304 ~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
..+.+ +|.+.+-....-+..++++++.|+++|+.+.++-+
T Consensus 91 a~~~g-v~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~ 130 (266)
T cd07944 91 ASGSV-VDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLM 130 (266)
T ss_pred HhcCC-cCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEE
Confidence 66655 78877654333377889999999999999887643
No 127
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=89.10 E-value=25 Score=36.55 Aligned_cols=168 Identities=21% Similarity=0.306 Sum_probs=99.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCC--------hhHHHHHHHHHHhhCCCcEEEE--eC-C-CCCC--HHH-HHHHH
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGKN--------LKEDIEVLRAIRAVHPDSSFIL--DA-N-EGYK--PQE-AVEVL 249 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~--------~~~d~~~l~avr~~~~~~~l~v--Da-N-~~w~--~~~-A~~~~ 249 (409)
.+.++..+.+..+.+.||..+-+--|.. -+.+.++++.+++..++..+.. =+ | -+|. +++ ...++
T Consensus 22 ~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv 101 (467)
T PRK14041 22 MRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFV 101 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHH
Confidence 3677888888888889999998832211 1246889999999877777643 22 3 2352 344 34467
Q ss_pred HHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCC-----CCCHHHH----HHHHHcCCCCEEEeCCCCC
Q 015289 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES-----CRSLDDV----KKIVKGNLADVINIKLAKV 320 (409)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs-----~~~~~~~----~~~i~~~a~div~~k~~~~ 320 (409)
+...+.++...-+-.|++ |.+.+....+.++ +.+..+....+ .++...+ +++.+.| +|.+.++=+-
T Consensus 102 ~~A~~~Gvd~irif~~ln--d~~n~~~~i~~ak-~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~G-ad~I~i~Dt~- 176 (467)
T PRK14041 102 KKVAEYGLDIIRIFDALN--DIRNLEKSIEVAK-KHGAHVQGAISYTVSPVHTLEYYLEFARELVDMG-VDSICIKDMA- 176 (467)
T ss_pred HHHHHCCcCEEEEEEeCC--HHHHHHHHHHHHH-HCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC-CCEEEECCcc-
Confidence 887888876555666665 4555554433333 34555553332 2333332 4455556 6888776543
Q ss_pred c---HHHHHHHHH-HHHHcCCcEEEccCCchHHHHHHHHHHHc
Q 015289 321 G---VLGALEIIE-VVRASGLNLMIGGMVETRLAMGFAGHLSA 359 (409)
Q Consensus 321 G---i~~~~~i~~-~A~~~gi~~~~~~~~es~i~~~~~~hlaa 359 (409)
| ..++.++.. +-++.++++.+|+....+++ .+-.++|
T Consensus 177 G~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA--~AN~laA 217 (467)
T PRK14041 177 GLLTPKRAYELVKALKKKFGVPVEVHSHCTTGLA--SLAYLAA 217 (467)
T ss_pred CCcCHHHHHHHHHHHHHhcCCceEEEecCCCCcH--HHHHHHH
Confidence 5 334555443 34456899998886544444 3434444
No 128
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=89.00 E-value=8.9 Score=40.56 Aligned_cols=159 Identities=15% Similarity=0.144 Sum_probs=97.5
Q ss_pred eeeeeeecCCCHHH-------HHHHHHHHHHcCCCeEEEecC--CCh--------hHHHHHHHHHHhh-CCC-cEEEEeC
Q 015289 176 ITTDITIPIVSPAE-------AAELASKYRKQGFTTLKLKVG--KNL--------KEDIEVLRAIRAV-HPD-SSFILDA 236 (409)
Q Consensus 176 i~~~~~i~~~~~~~-------~~~~~~~~~~~Gf~~~KiKvG--~~~--------~~d~~~l~avr~~-~~~-~~l~vDa 236 (409)
+|+..-.++.+.++ ..+.++++...|...+=+.-. .++ ..+-+.++.+-+. +.+ +.+.+|+
T Consensus 315 ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~ 394 (538)
T PLN02617 315 VPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDP 394 (538)
T ss_pred CCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEec
Confidence 44444445555443 356778888888865544321 111 1245778888777 555 7888997
Q ss_pred CCC----------------------------------C---CHHHHHHHHHHHHhCCCCCceeecCCCC------CCHHH
Q 015289 237 NEG----------------------------------Y---KPQEAVEVLEKLYEMGVTPVLFEQPVHR------DDWEG 273 (409)
Q Consensus 237 N~~----------------------------------w---~~~~A~~~~~~L~~~~l~~~~iEeP~~~------~d~~~ 273 (409)
... | +--++.++++++++++.. ..+=-=+.. .|++.
T Consensus 395 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gag-eil~t~id~DGt~~G~d~~l 473 (538)
T PLN02617 395 RRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAG-EILLNCIDCDGQGKGFDIEL 473 (538)
T ss_pred CcCcccCccccccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCC-EEEEeeccccccccCcCHHH
Confidence 532 2 122567899999998764 333333333 36777
Q ss_pred HHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe-CCCCCcHHHHHHHHHHHHHcCCcE
Q 015289 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI-KLAKVGVLGALEIIEVVRASGLNL 339 (409)
Q Consensus 274 ~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~-k~~~~Gi~~~~~i~~~A~~~gi~~ 339 (409)
++++++ ..++||.+.=-+.++.++.++++...+|.+.. .+-..+-....++-+..++.|+++
T Consensus 474 ~~~v~~----~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~~~gi~v 536 (538)
T PLN02617 474 VKLVSD----AVTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLLEEGIET 536 (538)
T ss_pred HHHHHh----hCCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHHHCCCcc
Confidence 777764 67899999888999999999998655555432 222223122334445666677765
No 129
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=88.92 E-value=12 Score=37.71 Aligned_cols=90 Identities=19% Similarity=0.224 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeec-------CC-CCC-CHHHHHHhHHHhhc
Q 015289 213 LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ-------PV-HRD-DWEGLGHVSHIAKD 283 (409)
Q Consensus 213 ~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEe-------P~-~~~-d~~~~~~l~~~~~~ 283 (409)
++.-.++++++++.+ +.+.+-. +..++.++++.+.+.++. +|.= -- ... ++..+.++.+
T Consensus 117 p~l~~~iv~~~~~~~--V~v~vr~----~~~~~~e~a~~l~eaGvd--~I~vhgrt~~~~h~~~~~~~~~i~~~ik---- 184 (368)
T PRK08649 117 PELITERIAEIRDAG--VIVAVSL----SPQRAQELAPTVVEAGVD--LFVIQGTVVSAEHVSKEGEPLNLKEFIY---- 184 (368)
T ss_pred HHHHHHHHHHHHhCe--EEEEEec----CCcCHHHHHHHHHHCCCC--EEEEeccchhhhccCCcCCHHHHHHHHH----
Confidence 344455666666642 3222222 233445666777777664 3331 11 111 4555665543
Q ss_pred cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 284 ~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
+.++||..+. +.+.++.+++++.| +|++.+-
T Consensus 185 ~~~ipVIaG~-V~t~e~A~~l~~aG-AD~V~VG 215 (368)
T PRK08649 185 ELDVPVIVGG-CVTYTTALHLMRTG-AAGVLVG 215 (368)
T ss_pred HCCCCEEEeC-CCCHHHHHHHHHcC-CCEEEEC
Confidence 4589998854 89999999999976 6998654
No 130
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=88.64 E-value=17 Score=33.50 Aligned_cols=109 Identities=15% Similarity=0.229 Sum_probs=71.9
Q ss_pred HHHHHHHHcCCCeEEEecCC--Ch--hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee-----
Q 015289 192 ELASKYRKQGFTTLKLKVGK--NL--KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF----- 262 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG~--~~--~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i----- 262 (409)
++++.+.+.|...+=+-... .+ +...+.++.+++. +++.++++.+ +.+++ +.+.+.+.. |+
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~---t~ee~----~~a~~~G~d--~i~~~~~ 148 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCS---TLEEG----LAAQKLGFD--FIGTTLS 148 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCC---CHHHH----HHHHHcCCC--EEEcCCc
Confidence 34566677898866654431 11 3445667777876 7888998876 66665 345555543 33
Q ss_pred --ecC---CCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 263 --EQP---VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 263 --EeP---~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+.. ....+++.++++++ ..++||..+=.+.+..++.++++.| +|.+.+
T Consensus 149 g~t~~~~~~~~~~~~~i~~i~~----~~~iPvia~GGI~t~~~~~~~l~~G-adgV~i 201 (221)
T PRK01130 149 GYTEETKKPEEPDFALLKELLK----AVGCPVIAEGRINTPEQAKKALELG-AHAVVV 201 (221)
T ss_pred eeecCCCCCCCcCHHHHHHHHH----hCCCCEEEECCCCCHHHHHHHHHCC-CCEEEE
Confidence 211 12234565666654 4589999998999999999999988 688865
No 131
>PLN02411 12-oxophytodienoate reductase
Probab=88.26 E-value=12 Score=37.86 Aligned_cols=123 Identities=11% Similarity=0.151 Sum_probs=72.3
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------C----hhHHHHHHHHHHhh-CCC-cEEEEeCC-----
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------N----LKEDIEVLRAIRAV-HPD-SSFILDAN----- 237 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~----~~~d~~~l~avr~~-~~~-~~l~vDaN----- 237 (409)
.++-++++++.||..|-|+.+. + .+--++.+++||++ +++ +.+++-+-
T Consensus 167 f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~ 246 (391)
T PLN02411 167 YRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLD 246 (391)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccC
Confidence 4556677788999999999651 1 22346789999997 666 34444321
Q ss_pred --CCCCHHHHHHHHHHHHhC------CCCCceeecCCC-----------CCCHH-HHHHhHHHhhccCCCeEEeCCCCCC
Q 015289 238 --EGYKPQEAVEVLEKLYEM------GVTPVLFEQPVH-----------RDDWE-GLGHVSHIAKDKFGVSVAADESCRS 297 (409)
Q Consensus 238 --~~w~~~~A~~~~~~L~~~------~l~~~~iEeP~~-----------~~d~~-~~~~l~~~~~~~~~ipIa~dEs~~~ 297 (409)
..-+.+++..+.+.|+.. ++ .+|+==.. ..... ....+++.+++..++||..-=.+ +
T Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~g~~v--d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i-~ 323 (391)
T PLN02411 247 ATDSDPLNLGLAVVERLNKLQLQNGSKL--AYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTFMCSGGF-T 323 (391)
T ss_pred CCCCcchhhHHHHHHHHHHHHhhcCCCe--EEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCEEEECCC-C
Confidence 122356677777777752 23 24421100 00000 01122222344677888877666 5
Q ss_pred HHHHHHHHHcCCCCEEEe
Q 015289 298 LDDVKKIVKGNLADVINI 315 (409)
Q Consensus 298 ~~~~~~~i~~~a~div~~ 315 (409)
.....++++.|.+|.|-+
T Consensus 324 ~~~a~~~l~~g~aDlV~~ 341 (391)
T PLN02411 324 RELGMQAVQQGDADLVSY 341 (391)
T ss_pred HHHHHHHHHcCCCCEEEE
Confidence 678889999999998743
No 132
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=88.03 E-value=6.1 Score=38.16 Aligned_cols=57 Identities=18% Similarity=0.297 Sum_probs=46.6
Q ss_pred ccCC-CeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 283 DKFG-VSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 283 ~~~~-ipIa~d-Es~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++.+ +||++. ....+.+.+++.++.| ++.+|+|.+... +..+.++.++|+.+|+.+.
T Consensus 70 ~~~~~vpv~lhlDH~~~~e~i~~ai~~G-f~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve 132 (282)
T TIGR01859 70 ERMSIVPVALHLDHGSSYESCIKAIKAG-FSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVE 132 (282)
T ss_pred HHCCCCeEEEECCCCCCHHHHHHHHHcC-CCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 4567 999987 5556788889999877 799999999886 3457899999999999765
No 133
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=88.02 E-value=8.6 Score=35.59 Aligned_cols=123 Identities=18% Similarity=0.272 Sum_probs=78.9
Q ss_pred eecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhC-C-CcEEEEeCCC------CC---CHHHHHHHH
Q 015289 181 TIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-P-DSSFILDANE------GY---KPQEAVEVL 249 (409)
Q Consensus 181 ~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~-~-~~~l~vDaN~------~w---~~~~A~~~~ 249 (409)
..++.++++ ++++.+.|.. ++=+|...-.|.+.++.+.+.+ . .+.+.+|... +| +..+..+++
T Consensus 79 ~GgI~~~e~----~~~~~~~Gad--~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~ 152 (234)
T cd04732 79 GGGIRSLED----IERLLDLGVS--RVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELA 152 (234)
T ss_pred eCCcCCHHH----HHHHHHcCCC--EEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHH
Confidence 334556544 4455567855 4456755556777788777764 3 4667778542 23 123445678
Q ss_pred HHHHhCCCCCcee------ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 250 EKLYEMGVTPVLF------EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 250 ~~L~~~~l~~~~i------EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+.+++.+.. .++ ++.....|++.++++++ .+++||..+--+.+..++..+++.| +|.+.+
T Consensus 153 ~~~~~~ga~-~iii~~~~~~g~~~g~~~~~i~~i~~----~~~ipvi~~GGi~~~~di~~~~~~G-a~gv~v 218 (234)
T cd04732 153 KRFEELGVK-AIIYTDISRDGTLSGPNFELYKELAA----ATGIPVIASGGVSSLDDIKALKELG-VAGVIV 218 (234)
T ss_pred HHHHHcCCC-EEEEEeecCCCccCCCCHHHHHHHHH----hcCCCEEEecCCCCHHHHHHHHHCC-CCEEEE
Confidence 888887653 222 22233346777787764 5689999999999999999999875 566654
No 134
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=87.92 E-value=29 Score=34.19 Aligned_cols=117 Identities=20% Similarity=0.277 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHcCCCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceee----
Q 015289 189 EAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---- 263 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE---- 263 (409)
+..+.++.+++.|...+-+.... +.+.-.+.++.+|+.+|++.+++ ...-+.++|... .+.+.. +|=
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~--G~v~t~~~A~~l----~~aGaD--~I~vg~g 165 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA--GNVVTAEAARDL----IDAGAD--GVKVGIG 165 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE--CCCCCHHHHHHH----HhcCCC--EEEECCC
Confidence 34566777888899888876642 22444677889999888888887 333566665443 445543 321
Q ss_pred ------c----CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 264 ------Q----PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 264 ------e----P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
. ....-++..+.++.+.+ ...++||.++--+.+..++.+++..| +|.+++
T Consensus 166 ~G~~~~t~~~~g~g~p~~~~i~~v~~~~-~~~~vpVIA~GGI~~~~di~kAla~G-A~~Vmi 225 (325)
T cd00381 166 PGSICTTRIVTGVGVPQATAVADVAAAA-RDYGVPVIADGGIRTSGDIVKALAAG-ADAVML 225 (325)
T ss_pred CCcCcccceeCCCCCCHHHHHHHHHHHH-hhcCCcEEecCCCCCHHHHHHHHHcC-CCEEEe
Confidence 0 11222455556665432 24579999999999999999999988 488766
No 135
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=87.65 E-value=24 Score=33.68 Aligned_cols=92 Identities=13% Similarity=0.077 Sum_probs=57.0
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC----------------------CChhHHHHHHHHHHhhCCC--cE
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------------KNLKEDIEVLRAIRAVHPD--SS 231 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG----------------------~~~~~d~~~l~avr~~~~~--~~ 231 (409)
+-.|.+.+.-+.+...+.++.+.+.|-..+.+-+- ..++.-.+.++++|+. .+ +-
T Consensus 17 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~-~~~p~v 95 (263)
T CHL00200 17 LIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE-IKAPIV 95 (263)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEE
Confidence 33466666666677777777777777777776652 1233445666666643 22 23
Q ss_pred EEEeCCCCC------------------------CHHHHHHHHHHHHhCCCCCceeecCCCC
Q 015289 232 FILDANEGY------------------------KPQEAVEVLEKLYEMGVTPVLFEQPVHR 268 (409)
Q Consensus 232 l~vDaN~~w------------------------~~~~A~~~~~~L~~~~l~~~~iEeP~~~ 268 (409)
+|.=.|--| ..+++.++.+.++++|+.+.++=-|..+
T Consensus 96 lm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~ 156 (263)
T CHL00200 96 IFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSS 156 (263)
T ss_pred EEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 566666322 3567778888888888776666666654
No 136
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=87.65 E-value=14 Score=35.94 Aligned_cols=100 Identities=15% Similarity=0.207 Sum_probs=71.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEe-------cC-------CChhHHHHHHHHHHhh--CCCcEE--EEeCCCCCCHHH
Q 015289 183 PIVSPAEAAELASKYRKQGFTTLKLK-------VG-------KNLKEDIEVLRAIRAV--HPDSSF--ILDANEGYKPQE 244 (409)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~Gf~~~KiK-------vG-------~~~~~d~~~l~avr~~--~~~~~l--~vDaN~~w~~~~ 244 (409)
|..++.++...++++.+.|...+-|. .| .+.++-+++|++++++ .+++-| |.|+......++
T Consensus 87 GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~de 166 (294)
T TIGR02319 87 GYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDE 166 (294)
T ss_pred CCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHH
Confidence 44556667777888888998888762 22 1445567888888886 345443 679987788999
Q ss_pred HHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeE
Q 015289 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 289 (409)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipI 289 (409)
|++.++...+.|-...|+|-|.. .+.++++.+ ....|+
T Consensus 167 aI~Ra~aY~eAGAD~ifi~~~~~---~~ei~~~~~----~~~~P~ 204 (294)
T TIGR02319 167 AIRRSREYVAAGADCIFLEAMLD---VEEMKRVRD----EIDAPL 204 (294)
T ss_pred HHHHHHHHHHhCCCEEEecCCCC---HHHHHHHHH----hcCCCe
Confidence 99999999998877779987654 455677764 345566
No 137
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=87.31 E-value=6.9 Score=37.78 Aligned_cols=57 Identities=14% Similarity=0.223 Sum_probs=46.5
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 283 ~~~~ipIa~d-Es~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++..+||++- ....+.+.+.++++.| ++.||+|-.... +..++++.++|+++|+++-
T Consensus 71 ~~~~vpv~lHlDH~~~~e~i~~Al~~G-~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~ve 132 (281)
T PRK06806 71 KQAKVPVAVHFDHGMTFEKIKEALEIG-FTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVE 132 (281)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 3568999965 3467888899999987 799999988875 4457899999999999874
No 138
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=87.17 E-value=18 Score=34.96 Aligned_cols=122 Identities=12% Similarity=0.126 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEE------e----cC-------CChhHHHHHHHHHHhh--CCCcEE--EEeCC-CCCCH
Q 015289 185 VSPAEAAELASKYRKQGFTTLKL------K----VG-------KNLKEDIEVLRAIRAV--HPDSSF--ILDAN-EGYKP 242 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~Ki------K----vG-------~~~~~d~~~l~avr~~--~~~~~l--~vDaN-~~w~~ 242 (409)
.++.++...++++.+.|...+-+ | .| .+.++=++++++++++ ++++.| +.|+- .....
T Consensus 89 g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~ 168 (285)
T TIGR02320 89 GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGM 168 (285)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCH
Confidence 58888888899999999988888 1 11 2445667788888875 456544 56764 35679
Q ss_pred HHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhcc-CCCeEEeCCCCCCHHHHHHHHHcC
Q 015289 243 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK-FGVSVAADESCRSLDDVKKIVKGN 308 (409)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~-~~ipIa~dEs~~~~~~~~~~i~~~ 308 (409)
++|++.+++..+.|-...|+|-+. .+.+.++++.+.++.. -++|+..-...+....+.++-+.|
T Consensus 169 ~eAi~Ra~ay~eAGAD~ifv~~~~--~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG 233 (285)
T TIGR02320 169 EDALKRAEAYAEAGADGIMIHSRK--KDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAG 233 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCC--CCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcC
Confidence 999999999999987767998422 3455666666532211 135776533222222344555555
No 139
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=87.15 E-value=36 Score=35.68 Aligned_cols=118 Identities=18% Similarity=0.235 Sum_probs=80.8
Q ss_pred HHHHHHHHHcCCCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceee---cCC
Q 015289 191 AELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---QPV 266 (409)
Q Consensus 191 ~~~~~~~~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE---eP~ 266 (409)
.+.++.+++.|...+-+.... +-..-++.++.+|+.+|++.|++ ..-.|.++|.... +.|.. +|= -|-
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~a--G~V~t~~~a~~~~----~aGad--~I~vg~g~G 314 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIA--GNVVTADQAKNLI----DAGAD--GLRIGMGSG 314 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEE--CCcCCHHHHHHHH----HcCCC--EEEECCcCC
Confidence 677888889999999888742 12234678899999888888877 4556777765443 46654 552 121
Q ss_pred C-----------CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 267 H-----------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 267 ~-----------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
. .-++..+.++++.+ ++.++||..|--+.+..|+.+++..|+ |.+++--.
T Consensus 315 s~~~t~~~~~~g~p~~~ai~~~~~~~-~~~~v~vIadGGi~~~~di~kAla~GA-~~Vm~G~~ 375 (495)
T PTZ00314 315 SICITQEVCAVGRPQASAVYHVARYA-RERGVPCIADGGIKNSGDICKALALGA-DCVMLGSL 375 (495)
T ss_pred cccccchhccCCCChHHHHHHHHHHH-hhcCCeEEecCCCCCHHHHHHHHHcCC-CEEEECch
Confidence 0 11344444554432 356899999999999999999999985 88876433
No 140
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=86.84 E-value=29 Score=32.93 Aligned_cols=160 Identities=16% Similarity=0.144 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHH-HHHHhhC--CCcEEEEeCC------CCCCHHHHHHHH-HHHHhC
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVL-RAIRAVH--PDSSFILDAN------EGYKPQEAVEVL-EKLYEM 255 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l-~avr~~~--~~~~l~vDaN------~~w~~~~A~~~~-~~L~~~ 255 (409)
+.++..+.++.+.+.|++.|-.--.-......+.+ +++++.. .++.|..=.. ..++.+...+-+ +.|+++
T Consensus 27 ~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L 106 (285)
T cd06660 27 DEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRL 106 (285)
T ss_pred CHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 45677788888899999998643221111123333 3444442 2333332221 125666544432 334444
Q ss_pred C---CCCceeecCCCCCC--HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHc--CCCCEEEeCCCCCcHHHHHHH
Q 015289 256 G---VTPVLFEQPVHRDD--WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG--NLADVINIKLAKVGVLGALEI 328 (409)
Q Consensus 256 ~---l~~~~iEeP~~~~d--~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~--~a~div~~k~~~~Gi~~~~~i 328 (409)
+ +.++++-.|-.... .+.+..|.+. + +-|.==+.|=|.++...+.++++. ..+|++|+...-+--.....+
T Consensus 107 ~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l-~-~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ 184 (285)
T cd06660 107 GTDYIDLYLLHWPDPDTPDIEETLRALEEL-V-KEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEEL 184 (285)
T ss_pred CCCceeEEEecCCCCCCCCHHHHHHHHHHH-H-HcCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHH
Confidence 3 33346666654322 2333333332 2 224333455577888888888887 789999987765421111268
Q ss_pred HHHHHHcCCcEEEccCCch
Q 015289 329 IEVVRASGLNLMIGGMVET 347 (409)
Q Consensus 329 ~~~A~~~gi~~~~~~~~es 347 (409)
...|+++|+.++..+.+..
T Consensus 185 ~~~~~~~gi~v~~~~~l~~ 203 (285)
T cd06660 185 LPYCREHGIGVIAYSPLAG 203 (285)
T ss_pred HHHHHHcCcEEEEeccccC
Confidence 8999999999998776543
No 141
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=86.76 E-value=8.8 Score=37.17 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=47.9
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 283 ~~~~ipIa~d-Es~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++.++||++- ....+...+.++++.| ++-|.+|-+..- +..++++.++|+++|+.+-
T Consensus 71 ~~~~VPValHLDHg~~~e~i~~ai~~G-FtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VE 132 (286)
T PRK12738 71 TTYNMPLALHLDHHESLDDIRRKVHAG-VRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVE 132 (286)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 4678999976 3566888999999987 699999999874 5678999999999999874
No 142
>PRK06801 hypothetical protein; Provisional
Probab=86.53 E-value=17 Score=35.13 Aligned_cols=102 Identities=10% Similarity=0.125 Sum_probs=64.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCceeecCC---CCCCHHHHHHhHHHhhccCCCeEEeC-CCCCCHHHHHHHHHcCCCC
Q 015289 236 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPV---HRDDWEGLGHVSHIAKDKFGVSVAAD-ESCRSLDDVKKIVKGNLAD 311 (409)
Q Consensus 236 aN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~---~~~d~~~~~~l~~~~~~~~~ipIa~d-Es~~~~~~~~~~i~~~a~d 311 (409)
|-..++.+.+..+++..++.+. |..|+=-- ....++.+..+.....++..+||++- ....+.+.+.+.++.| ++
T Consensus 22 Afn~~n~e~~~avi~AAe~~~~-PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~G-ft 99 (286)
T PRK06801 22 AFNVLDSHFLRALFAAAKQERS-PFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLG-FS 99 (286)
T ss_pred EEeeCCHHHHHHHHHHHHHHCC-CEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhC-Cc
Confidence 3334456665556666555542 33332111 11122333333333334678999976 3466788899999987 79
Q ss_pred EEEeCCCCCc----HHHHHHHHHHHHHcCCcE
Q 015289 312 VINIKLAKVG----VLGALEIIEVVRASGLNL 339 (409)
Q Consensus 312 iv~~k~~~~G----i~~~~~i~~~A~~~gi~~ 339 (409)
.|++|-+..- +..++++.++|+.+|+.+
T Consensus 100 SVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 100 SVMFDGSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 9999988763 556889999999999987
No 143
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=86.27 E-value=10 Score=37.58 Aligned_cols=100 Identities=16% Similarity=0.130 Sum_probs=69.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCceeec--------------CCCCCCHHHHHHhHHHhhccCCCeEE--eCCCCCCHHHH
Q 015289 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQ--------------PVHRDDWEGLGHVSHIAKDKFGVSVA--ADESCRSLDDV 301 (409)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEe--------------P~~~~d~~~~~~l~~~~~~~~~ipIa--~dEs~~~~~~~ 301 (409)
..|+.++.+++++.|.+.|+. .||= |....+++.++.+++. ..+..++ +.=...+..++
T Consensus 20 ~~f~~~~~~~i~~~L~~aGv~--~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~---~~~~~~~~ll~pg~~~~~dl 94 (337)
T PRK08195 20 HQYTLEQVRAIARALDAAGVP--VIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEV---VKQAKIAALLLPGIGTVDDL 94 (337)
T ss_pred CccCHHHHHHHHHHHHHcCCC--EEEeecCCCCCCccccCCCCCCCHHHHHHHHHHh---CCCCEEEEEeccCcccHHHH
Confidence 446899999999999999985 8887 2223456666766542 2234444 32234567889
Q ss_pred HHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccC
Q 015289 302 KKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 302 ~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
+.+.+.| +|++.+-. .+. .....+.++.|+++|+.+...-|
T Consensus 95 ~~a~~~g-vd~iri~~-~~~e~~~~~~~i~~ak~~G~~v~~~l~ 136 (337)
T PRK08195 95 KMAYDAG-VRVVRVAT-HCTEADVSEQHIGLARELGMDTVGFLM 136 (337)
T ss_pred HHHHHcC-CCEEEEEE-ecchHHHHHHHHHHHHHCCCeEEEEEE
Confidence 8888876 68877643 334 55678899999999999876443
No 144
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=86.13 E-value=8.6 Score=37.04 Aligned_cols=103 Identities=19% Similarity=0.202 Sum_probs=67.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCceeecCCCC---CCHHHHHHhHHHhhccCCCeEEeCC-CCCCHHHHHHHHHcCCCC
Q 015289 236 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR---DDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLAD 311 (409)
Q Consensus 236 aN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~---~d~~~~~~l~~~~~~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d 311 (409)
|-..++.+.+..+++..++.+- |..|+=--.. ..++.+..+.+.+.++..+||++-= ...+++++.+.++.| ++
T Consensus 17 AfN~~n~e~~~avi~AAe~~~s-PvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~~G-ft 94 (276)
T cd00947 17 AFNINNLETLKAILEAAEETRS-PVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIRAG-FS 94 (276)
T ss_pred EEeeCCHHHHHHHHHHHHHhCC-CEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhC-CC
Confidence 3344566666666666666552 3444321111 1122233332223346789999763 456789999999988 89
Q ss_pred EEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 312 VINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 312 iv~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
-+.+|-+..= +..++++.++|+++|+.+-
T Consensus 95 SVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VE 127 (276)
T cd00947 95 SVMIDGSHLPFEENVAKTKEVVELAHAYGVSVE 127 (276)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 9999999864 6678999999999999874
No 145
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=86.11 E-value=33 Score=32.90 Aligned_cols=177 Identities=21% Similarity=0.270 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCC--------ChhHHHHHHHHHHhhCCCcEEEEeCC----CCCC--HHH-HHHHHH
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGK--------NLKEDIEVLRAIRAVHPDSSFILDAN----EGYK--PQE-AVEVLE 250 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~--------~~~~d~~~l~avr~~~~~~~l~vDaN----~~w~--~~~-A~~~~~ 250 (409)
+.++..+.+..+.+.|+..+-+-.+. --+.+.++++.+++..++.+|..=++ -+|. +.. -...++
T Consensus 19 ~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~ 98 (275)
T cd07937 19 RTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVE 98 (275)
T ss_pred cHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHH
Confidence 56777777888888999998876542 13467889999999876665542121 1221 112 245677
Q ss_pred HHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEe-----CCCCCCHHHHHH----HHHcCCCCEEEeCCCC-C
Q 015289 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-----DESCRSLDDVKK----IVKGNLADVINIKLAK-V 320 (409)
Q Consensus 251 ~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-----dEs~~~~~~~~~----~i~~~a~div~~k~~~-~ 320 (409)
...+.++....+-.|++ |++.+.+..+.++ ..+..+.. +-+..+...+.+ +.+.| +|.+.+.=+- +
T Consensus 99 ~~~~~g~~~iri~~~~~--~~~~~~~~i~~ak-~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~G-a~~i~l~DT~G~ 174 (275)
T cd07937 99 KAAKNGIDIFRIFDALN--DVRNLEVAIKAVK-KAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMG-ADSICIKDMAGL 174 (275)
T ss_pred HHHHcCCCEEEEeecCC--hHHHHHHHHHHHH-HCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcC-CCEEEEcCCCCC
Confidence 77787776445666665 5665555444333 23444432 224455555443 34455 6777665432 2
Q ss_pred c-HHHHHHHHHH-HHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceec
Q 015289 321 G-VLGALEIIEV-VRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 368 (409)
Q Consensus 321 G-i~~~~~i~~~-A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e 368 (409)
+ ..+..++... -+..++++.+|+....+ ++.+-.++|.-..+.+++
T Consensus 175 ~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~G--lA~aN~laA~~aGa~~vd 222 (275)
T cd07937 175 LTPYAAYELVKALKKEVGLPIHLHTHDTSG--LAVATYLAAAEAGVDIVD 222 (275)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEecCCCC--hHHHHHHHHHHhCCCEEE
Confidence 2 3455555544 44557888888754434 444444444333345544
No 146
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=85.67 E-value=21 Score=34.46 Aligned_cols=114 Identities=17% Similarity=0.168 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhh-C-CCcEE-----EE----eC----CCCC-CHHHHHHHHHHHHh
Q 015289 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDSSF-----IL----DA----NEGY-KPQEAVEVLEKLYE 254 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~-~-~~~~l-----~v----Da----N~~w-~~~~A~~~~~~L~~ 254 (409)
+.+.++++.||+.+-+.-. .++++.++..+.+.+. . -++.+ .+ |. ...| ++++|.+|+++..-
T Consensus 88 e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~Tgv 167 (283)
T PRK07998 88 EDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGC 167 (283)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCc
Confidence 3445567889999999765 4567788877777652 1 22211 01 11 1124 59999999886542
Q ss_pred ----------CCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 255 ----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 255 ----------~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
.|+ |-. +.-|++.++++++ .+++|+.+ |=|=...++++++++.|.. =+|+.
T Consensus 168 D~LAvaiGt~HG~---Y~~---p~l~~~~l~~I~~----~~~vPLVlHGgSG~~~e~~~~ai~~Gi~-KiNi~ 229 (283)
T PRK07998 168 DMLAVSIGNVHGL---EDI---PRIDIPLLKRIAE----VSPVPLVIHGGSGIPPEILRSFVNYKVA-KVNIA 229 (283)
T ss_pred CeeehhccccccC---CCC---CCcCHHHHHHHHh----hCCCCEEEeCCCCCCHHHHHHHHHcCCc-EEEEC
Confidence 121 322 5568888998875 57899885 4566666889999998854 44553
No 147
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=85.61 E-value=13 Score=35.94 Aligned_cols=57 Identities=11% Similarity=0.226 Sum_probs=47.7
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 283 ~~~~ipIa~d-Es~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++..+||++- ....+++.+.++++.| ++-|.+|.+..- +..++++.++|+.+|+.+-
T Consensus 71 ~~~~VPV~lHLDHg~~~e~i~~Ai~~G-ftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VE 132 (284)
T PRK09195 71 KQYHHPLALHLDHHEKFDDIAQKVRSG-VRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVE 132 (284)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 4678999976 3566889999999998 699999999874 5568999999999998773
No 148
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=85.54 E-value=6.6 Score=36.07 Aligned_cols=71 Identities=23% Similarity=0.167 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCceeec---CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 240 YKPQEAVEVLEKLYEMGVTPVLFEQ---PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEe---P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
.+++++..++...+.+++.+.|+|. -..+-+.+-.+++++ .+++|+..|=-+.+.++++++++.| +|.+.+
T Consensus 131 ~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~----~~~~Pv~vGGGIrs~e~a~~l~~~G-AD~VVV 204 (205)
T TIGR01769 131 NKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKK----ASGIPLIVGGGIRSPEIAYEIVLAG-ADAIVT 204 (205)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHH----hhCCCEEEeCCCCCHHHHHHHHHcC-CCEEEe
Confidence 6789999999999988888788998 333345666666654 5689999999999999999998877 687754
No 149
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=85.50 E-value=14 Score=35.73 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=47.7
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 283 ~~~~ipIa~d-Es~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++.++||++- ....+.+.+.+.++.| ++-|++|-+..= +..++++.++|+++|+.+-
T Consensus 69 ~~~~VPValHLDHg~~~e~i~~ai~~G-FtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VE 130 (282)
T TIGR01858 69 TTYNMPLALHLDHHESLDDIRQKVHAG-VRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVE 130 (282)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 4678999976 3466889999999997 699999999864 5568999999999999874
No 150
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=85.45 E-value=20 Score=37.53 Aligned_cols=104 Identities=18% Similarity=0.338 Sum_probs=68.8
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCC-CCC---CHHHHHHhHHHhhcc-CCCeEEeCCCCCCHHHHHHHH
Q 015289 231 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPV-HRD---DWEGLGHVSHIAKDK-FGVSVAADESCRSLDDVKKIV 305 (409)
Q Consensus 231 ~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~-~~~---d~~~~~~l~~~~~~~-~~ipIa~dEs~~~~~~~~~~i 305 (409)
+|+|-+--+-+.++ .+.++.|-+.++. .||=-. +.+ .++.++++++ . .+++|.+| ++.+.++.+.++
T Consensus 229 rL~Vgaavg~~~~~-~~~~~~l~~ag~d--~i~id~a~G~s~~~~~~i~~ik~----~~~~~~v~aG-~V~t~~~a~~~~ 300 (495)
T PTZ00314 229 QLLVGAAISTRPED-IERAAALIEAGVD--VLVVDSSQGNSIYQIDMIKKLKS----NYPHVDIIAG-NVVTADQAKNLI 300 (495)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHCCCC--EEEEecCCCCchHHHHHHHHHHh----hCCCceEEEC-CcCCHHHHHHHH
Confidence 45554433334444 6788888888875 677333 222 2344555553 3 36899997 889999999999
Q ss_pred HcCCCCEEEeCCC-----------CCc---HHHHHHHHHHHHHcCCcEEEcc
Q 015289 306 KGNLADVINIKLA-----------KVG---VLGALEIIEVVRASGLNLMIGG 343 (409)
Q Consensus 306 ~~~a~div~~k~~-----------~~G---i~~~~~i~~~A~~~gi~~~~~~ 343 (409)
+.| +|++.+-++ -+| ++...++++.|+++|++++..+
T Consensus 301 ~aG-ad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadG 351 (495)
T PTZ00314 301 DAG-ADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADG 351 (495)
T ss_pred HcC-CCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecC
Confidence 988 599865421 134 2334678889999999999944
No 151
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=85.39 E-value=28 Score=32.02 Aligned_cols=115 Identities=19% Similarity=0.204 Sum_probs=81.2
Q ss_pred HHHHHHHhhC-CCcEEEEeCCCCCCHHHHHHHHHHHHhC-CCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCC
Q 015289 218 EVLRAIRAVH-PDSSFILDANEGYKPQEAVEVLEKLYEM-GVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESC 295 (409)
Q Consensus 218 ~~l~avr~~~-~~~~l~vDaN~~w~~~~A~~~~~~L~~~-~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~ 295 (409)
+.++.+++.. ..+.+-++ +.+.++.++.++.|.+. + ..+||=|+...-++..++|.+ .++++...- +
T Consensus 41 ~~~~~i~~~~~~~v~~qv~---~~~~e~~i~~a~~l~~~~~--~~~iKIP~T~~gl~ai~~L~~-----~gi~v~~T~-V 109 (211)
T cd00956 41 AVLKEICEIIDGPVSAQVV---STDAEGMVAEARKLASLGG--NVVVKIPVTEDGLKAIKKLSE-----EGIKTNVTA-I 109 (211)
T ss_pred HHHHHHHHhcCCCEEEEEE---eCCHHHHHHHHHHHHHhCC--CEEEEEcCcHhHHHHHHHHHH-----cCCceeeEE-e
Confidence 4566666653 33455555 46788888888888776 4 259999998744555555542 367776543 7
Q ss_pred CCHHHHHHHHHcCCCCEEEeCCCCC---c---HHHHHHHHHHHHHcCCc---EEEccC
Q 015289 296 RSLDDVKKIVKGNLADVINIKLAKV---G---VLGALEIIEVVRASGLN---LMIGGM 344 (409)
Q Consensus 296 ~~~~~~~~~i~~~a~div~~k~~~~---G---i~~~~~i~~~A~~~gi~---~~~~~~ 344 (409)
++..+....++.| ++++.|-+.++ | +.-..++.++++.+|++ ++.|..
T Consensus 110 ~s~~Qa~~Aa~AG-A~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r 166 (211)
T cd00956 110 FSAAQALLAAKAG-ATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIR 166 (211)
T ss_pred cCHHHHHHHHHcC-CCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccC
Confidence 9999999999988 59999988883 3 44567899999999988 555554
No 152
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=85.35 E-value=21 Score=33.00 Aligned_cols=114 Identities=18% Similarity=0.247 Sum_probs=72.4
Q ss_pred HHHHHHcCCCeEEEecCCChhHHHHHHHHHHhh-C-CCcEEEEeCC------CCCCH---HHHHHHHHHHHhCCCCCcee
Q 015289 194 ASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-H-PDSSFILDAN------EGYKP---QEAVEVLEKLYEMGVTPVLF 262 (409)
Q Consensus 194 ~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~-~-~~~~l~vDaN------~~w~~---~~A~~~~~~L~~~~l~~~~i 262 (409)
++++.+.|...+ =+|..+-.|.+.+..+.+. + ..+.+.+|.. .+|.. ....++++.+++.+.. .++
T Consensus 87 ~~~~~~~Ga~~v--vlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~-~ii 163 (230)
T TIGR00007 87 VEKLLDLGVDRV--IIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLE-GII 163 (230)
T ss_pred HHHHHHcCCCEE--EEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCC-EEE
Confidence 455666788754 3554334566667666665 4 3466778865 23421 2335677778777654 223
Q ss_pred ------ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 263 ------EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 263 ------EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+.-....|++.++++++ ..++||.++=-+.+.+|++++.+.| +|.+.+
T Consensus 164 ~~~~~~~g~~~g~~~~~i~~i~~----~~~ipvia~GGi~~~~di~~~~~~G-adgv~i 217 (230)
T TIGR00007 164 YTDISRDGTLSGPNFELTKELVK----AVNVPVIASGGVSSIDDLIALKKLG-VYGVIV 217 (230)
T ss_pred EEeecCCCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHCC-CCEEEE
Confidence 22233346777777764 5789999999999999999988866 677654
No 153
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=85.04 E-value=15 Score=33.54 Aligned_cols=143 Identities=16% Similarity=0.296 Sum_probs=92.6
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCce
Q 015289 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (409)
Q Consensus 182 i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (409)
+-..++++..+.++.+.+.|++.+.+-... ..-.+.++.+++.+|+ +.+=+..-.|.+++.+..+ .|.+ |
T Consensus 14 ir~~~~~~a~~~~~al~~gGi~~iEiT~~t--~~a~~~I~~l~~~~p~--~~vGAGTV~~~e~a~~a~~----aGA~--F 83 (196)
T PF01081_consen 14 IRGDDPEDAVPIAEALIEGGIRAIEITLRT--PNALEAIEALRKEFPD--LLVGAGTVLTAEQAEAAIA----AGAQ--F 83 (196)
T ss_dssp ETTSSGGGHHHHHHHHHHTT--EEEEETTS--TTHHHHHHHHHHHHTT--SEEEEES--SHHHHHHHHH----HT-S--E
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEecCC--ccHHHHHHHHHHHCCC--CeeEEEeccCHHHHHHHHH----cCCC--E
Confidence 334577888888999999999999998863 3446678888888887 5677888889988755544 4543 7
Q ss_pred eecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCC-cHHHHHHHHHHHHHcCCcEE
Q 015289 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~-Gi~~~~~i~~~A~~~gi~~~ 340 (409)
+=-|.-..+ +-+.++ +.++|+.-| +.++.++..+++.| ++++.+=|... |....+|...-- --+++++
T Consensus 84 ivSP~~~~~---v~~~~~----~~~i~~iPG--~~TptEi~~A~~~G-~~~vK~FPA~~~GG~~~ik~l~~p-~p~~~~~ 152 (196)
T PF01081_consen 84 IVSPGFDPE---VIEYAR----EYGIPYIPG--VMTPTEIMQALEAG-ADIVKLFPAGALGGPSYIKALRGP-FPDLPFM 152 (196)
T ss_dssp EEESS--HH---HHHHHH----HHTSEEEEE--ESSHHHHHHHHHTT--SEEEETTTTTTTHHHHHHHHHTT-TTT-EEE
T ss_pred EECCCCCHH---HHHHHH----HcCCcccCC--cCCHHHHHHHHHCC-CCEEEEecchhcCcHHHHHHHhcc-CCCCeEE
Confidence 777864322 333332 458898874 78999999999988 59998888764 744444332211 2368888
Q ss_pred EccCC
Q 015289 341 IGGMV 345 (409)
Q Consensus 341 ~~~~~ 345 (409)
+.+-+
T Consensus 153 ptGGV 157 (196)
T PF01081_consen 153 PTGGV 157 (196)
T ss_dssp EBSS-
T ss_pred EcCCC
Confidence 86543
No 154
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=84.98 E-value=19 Score=34.10 Aligned_cols=111 Identities=14% Similarity=0.204 Sum_probs=73.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCceeecCCC---CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015289 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVH---RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314 (409)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~---~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~ 314 (409)
..|+.++.+++++.|.+.|+. .||=-++ ..+++.++++.+ ...+..+..- .-.+..++..+.+.+ +|.+.
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~--~iE~g~p~~~~~~~e~~~~l~~---~~~~~~~~~~-~r~~~~~v~~a~~~g-~~~i~ 87 (259)
T cd07939 15 VAFSREEKLAIARALDEAGVD--EIEVGIPAMGEEEREAIRAIVA---LGLPARLIVW-CRAVKEDIEAALRCG-VTAVH 87 (259)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEecCCCCHHHHHHHHHHHh---cCCCCEEEEe-ccCCHHHHHHHHhCC-cCEEE
Confidence 357899999999999999986 8998443 234455666653 2334555432 224677888888876 68776
Q ss_pred eCCCCC--------c------HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHH
Q 015289 315 IKLAKV--------G------VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAG 355 (409)
Q Consensus 315 ~k~~~~--------G------i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~ 355 (409)
+=.+.. | +....++++.|++.|+.+.++++..+........
T Consensus 88 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~ 142 (259)
T cd07939 88 ISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLI 142 (259)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHH
Confidence 632111 1 2345678999999999999888765543333433
No 155
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=84.92 E-value=53 Score=35.17 Aligned_cols=164 Identities=20% Similarity=0.287 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCC--------hhHHHHHHHHHHhhCCCcEEEEe---CCC-CCC--HHH-HHHHH
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGKN--------LKEDIEVLRAIRAVHPDSSFILD---ANE-GYK--PQE-AVEVL 249 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~--------~~~d~~~l~avr~~~~~~~l~vD---aN~-~w~--~~~-A~~~~ 249 (409)
.+.++..+.+..+.+.||..+-+--|.. -+.+.++++.+|+..++..+..= .|. +|. +++ ...++
T Consensus 18 ~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v 97 (582)
T TIGR01108 18 MRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFV 97 (582)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHH
Confidence 3667888888888889999998852211 13578899999998777766432 232 342 334 34578
Q ss_pred HHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeC--CC---CCCHHHH----HHHHHcCCCCEEEeCCCCC
Q 015289 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD--ES---CRSLDDV----KKIVKGNLADVINIKLAKV 320 (409)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~d--Es---~~~~~~~----~~~i~~~a~div~~k~~~~ 320 (409)
++..+.++...-+-.++. |.+.+....+.++ ..+..+... .+ .++...+ +++.+.| +|.+.++=+-
T Consensus 98 ~~a~~~Gvd~irif~~ln--d~~n~~~~i~~ak-~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~G-ad~I~i~Dt~- 172 (582)
T TIGR01108 98 KKAVENGMDVFRIFDALN--DPRNLQAAIQAAK-KHGAHAQGTISYTTSPVHTLETYLDLAEELLEMG-VDSICIKDMA- 172 (582)
T ss_pred HHHHHCCCCEEEEEEecC--cHHHHHHHHHHHH-HcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC-CCEEEECCCC-
Confidence 888888876455666665 4444544333333 234444432 22 1344433 3445556 6887776554
Q ss_pred c---HHHHHHHH-HHHHHcCCcEEEccCCchHHHHHH
Q 015289 321 G---VLGALEII-EVVRASGLNLMIGGMVETRLAMGF 353 (409)
Q Consensus 321 G---i~~~~~i~-~~A~~~gi~~~~~~~~es~i~~~~ 353 (409)
| ...+.++. .+-+..++++.+|+...++++.+.
T Consensus 173 G~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An 209 (582)
T TIGR01108 173 GILTPKAAYELVSALKKRFGLPVHLHSHATTGMAEMA 209 (582)
T ss_pred CCcCHHHHHHHHHHHHHhCCCceEEEecCCCCcHHHH
Confidence 4 33455544 444566888888886555554433
No 156
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=84.91 E-value=9.3 Score=36.96 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=47.7
Q ss_pred ccCCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 283 DKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 283 ~~~~ipIa~dE-s~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++.++||++-= ...+.+.+.++++.| ++-|.+|.+..- +..++++.++|+++|+.+-
T Consensus 71 ~~~~VPValHLDH~~~~e~i~~ai~~G-ftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVE 132 (284)
T PRK12737 71 RKYNIPLALHLDHHEDLDDIKKKVRAG-IRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVE 132 (284)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 46789999764 466788999999997 789999999874 5668999999999999874
No 157
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=84.80 E-value=5.2 Score=36.32 Aligned_cols=96 Identities=15% Similarity=0.142 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCCceeecC--CC-CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHH--HHHHHHHcCCCCEE
Q 015289 239 GYKPQEAVEVLEKLYEMGVTPVLFEQP--VH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLD--DVKKIVKGNLADVI 313 (409)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEeP--~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~--~~~~~i~~~a~div 313 (409)
..+.++|.++++.+ +.++. |||-. +. +.-.+.++.+++. ..+..+..|=.+.++. +++.+.+.| +|++
T Consensus 8 ~~~~~~a~~~~~~l-~~~v~--~iev~~~l~~~~g~~~i~~l~~~---~~~~~i~~d~k~~d~~~~~~~~~~~~G-ad~i 80 (206)
T TIGR03128 8 LLDIEEALELAEKV-ADYVD--IIEIGTPLIKNEGIEAVKEMKEA---FPDRKVLADLKTMDAGEYEAEQAFAAG-ADIV 80 (206)
T ss_pred CCCHHHHHHHHHHc-ccCee--EEEeCCHHHHHhCHHHHHHHHHH---CCCCEEEEEEeeccchHHHHHHHHHcC-CCEE
Confidence 36789999999999 66764 99995 32 2234555555531 2356777776555654 677888877 5888
Q ss_pred EeCCCCCcHHHHHHHHHHHHHcCCcEEEc
Q 015289 314 NIKLAKVGVLGALEIIEVVRASGLNLMIG 342 (409)
Q Consensus 314 ~~k~~~~Gi~~~~~i~~~A~~~gi~~~~~ 342 (409)
.+.... +.....++.+.|+++|+++++.
T Consensus 81 ~vh~~~-~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 81 TVLGVA-DDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred EEeccC-CHHHHHHHHHHHHHcCCEEEEE
Confidence 766543 2223467888999999999975
No 158
>PRK12999 pyruvate carboxylase; Reviewed
Probab=84.49 E-value=39 Score=39.27 Aligned_cols=167 Identities=17% Similarity=0.235 Sum_probs=101.8
Q ss_pred CHHHHHHHHHHHHHc--CCCeEEEecCCC--------hhHHHHHHHHHHhhCCCcEEEEeCCC----CCC--HH-HHHHH
Q 015289 186 SPAEAAELASKYRKQ--GFTTLKLKVGKN--------LKEDIEVLRAIRAVHPDSSFILDANE----GYK--PQ-EAVEV 248 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~--Gf~~~KiKvG~~--------~~~d~~~l~avr~~~~~~~l~vDaN~----~w~--~~-~A~~~ 248 (409)
+.+++...+..+.+. ||..+.+--|.. -+.+.++++.+|+..|+..|.+=..+ +|+ ++ -...+
T Consensus 553 ~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~ 632 (1146)
T PRK12999 553 RTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAF 632 (1146)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHHHH
Confidence 346777778888888 998888765521 14678999999999887765433322 454 23 33447
Q ss_pred HHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCC----CeEEeC-------CCCCCHHHH----HHHHHcCCCCEE
Q 015289 249 LEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG----VSVAAD-------ESCRSLDDV----KKIVKGNLADVI 313 (409)
Q Consensus 249 ~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~----ipIa~d-------Es~~~~~~~----~~~i~~~a~div 313 (409)
++...+.++.+.-+=+++. |.+.+....+..++. + +-|+.- ...+++.-+ +++.+.| +|.+
T Consensus 633 i~~a~~~Gid~~rifd~ln--d~~~~~~~i~~vk~~-g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~G-a~~i 708 (1146)
T PRK12999 633 VREAAAAGIDVFRIFDSLN--WVENMRVAIDAVRET-GKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAG-AHIL 708 (1146)
T ss_pred HHHHHHcCCCEEEEeccCC--hHHHHHHHHHHHHHc-CCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcC-CCEE
Confidence 8888888887666777765 466666554444332 4 333322 223455433 3445555 6888
Q ss_pred EeCCCCCc-H--HHHHHHHH-HHHHcCCcEEEccCCchHHHHHHHHHHHc
Q 015289 314 NIKLAKVG-V--LGALEIIE-VVRASGLNLMIGGMVETRLAMGFAGHLSA 359 (409)
Q Consensus 314 ~~k~~~~G-i--~~~~~i~~-~A~~~gi~~~~~~~~es~i~~~~~~hlaa 359 (409)
.++=+- | + ..+.+++. +-++.++++.+|+...++++ .+..++|
T Consensus 709 ~ikDt~-G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla--~an~laA 755 (1146)
T PRK12999 709 AIKDMA-GLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNG--LATYLAA 755 (1146)
T ss_pred EECCcc-CCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchH--HHHHHHH
Confidence 887553 5 3 34445443 44556899999886555544 4444444
No 159
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=84.37 E-value=33 Score=35.49 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHcCCCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee---ec
Q 015289 189 EAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF---EQ 264 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i---Ee 264 (409)
+..++++.+++.|...+-+.... +-..-.+.++.+|+.+|++.+++ ....|.++|....+ .|.. +| =-
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~--G~v~t~~~a~~l~~----aGad--~i~vg~g 295 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA--GNVATAEQAKALID----AGAD--GLRVGIG 295 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE--EeCCCHHHHHHHHH----hCCC--EEEECCC
Confidence 34466777888899999888742 22344566888888888888777 44567777655544 4443 33 11
Q ss_pred C-----------CCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 265 P-----------VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 265 P-----------~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
| +..-++..+.++++.+ ++.++||.+|--+.+..|+.++++.|+ |.+++-
T Consensus 296 ~G~~~~t~~~~~~g~p~~~~i~~~~~~~-~~~~vpviadGGi~~~~di~kAla~GA-~~V~~G 356 (450)
T TIGR01302 296 PGSICTTRIVAGVGVPQITAVYDVAEYA-AQSGIPVIADGGIRYSGDIVKALAAGA-DAVMLG 356 (450)
T ss_pred CCcCCccceecCCCccHHHHHHHHHHHH-hhcCCeEEEeCCCCCHHHHHHHHHcCC-CEEEEC
Confidence 2 1112344555554432 246899999999999999999999985 887763
No 160
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=83.93 E-value=18 Score=36.54 Aligned_cols=115 Identities=19% Similarity=0.302 Sum_probs=73.4
Q ss_pred eCCCC----CCHHHHHHHHHHHHhCCCCCceeec--CCC-CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHc
Q 015289 235 DANEG----YKPQEAVEVLEKLYEMGVTPVLFEQ--PVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307 (409)
Q Consensus 235 DaN~~----w~~~~A~~~~~~L~~~~l~~~~iEe--P~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 307 (409)
|.+|+ |+.++-+++++.|.+.|+. .||= |.. +++++.++++.+ ......++.- +-....++..+++.
T Consensus 14 DG~Q~~~~~~s~e~k~~ia~~L~~~GV~--~IE~G~p~~~~~~~e~i~~i~~---~~~~~~i~~~-~r~~~~di~~a~~~ 87 (378)
T PRK11858 14 DGEQTPGVVFTNEEKLAIARMLDEIGVD--QIEAGFPAVSEDEKEAIKAIAK---LGLNASILAL-NRAVKSDIDASIDC 87 (378)
T ss_pred ccCcCCCCCCCHHHHHHHHHHHHHhCCC--EEEEeCCCcChHHHHHHHHHHh---cCCCeEEEEE-cccCHHHHHHHHhC
Confidence 56664 7899999999999999986 8996 533 334566666653 1223334332 33357788888887
Q ss_pred CCCCEEEeCCCC--------Cc------HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHH
Q 015289 308 NLADVINIKLAK--------VG------VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356 (409)
Q Consensus 308 ~a~div~~k~~~--------~G------i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~h 356 (409)
+ ++.+.+=... .| +....+.+++|++.|+.+.++++..+.........
T Consensus 88 g-~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~ 149 (378)
T PRK11858 88 G-VDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIE 149 (378)
T ss_pred C-cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHH
Confidence 6 5776552221 11 23456689999999999998876544333333333
No 161
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=83.91 E-value=41 Score=32.15 Aligned_cols=92 Identities=22% Similarity=0.308 Sum_probs=59.5
Q ss_pred eeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC----------------------CChhHHHHHHHHHHhhCCC--cEEE
Q 015289 178 TDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------------KNLKEDIEVLRAIRAVHPD--SSFI 233 (409)
Q Consensus 178 ~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG----------------------~~~~~d~~~l~avr~~~~~--~~l~ 233 (409)
.|.+.+.-+++...+.++.+.+.|-..+.+-+- -.++.-.+.++.+|+.+.+ +.||
T Consensus 21 ~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm 100 (265)
T COG0159 21 PYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLM 100 (265)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 355666666777777777777777777776552 1234566777777776655 3455
Q ss_pred EeCCCCC------------------------CHHHHHHHHHHHHhCCCCCceeecCCCCC
Q 015289 234 LDANEGY------------------------KPQEAVEVLEKLYEMGVTPVLFEQPVHRD 269 (409)
Q Consensus 234 vDaN~~w------------------------~~~~A~~~~~~L~~~~l~~~~iEeP~~~~ 269 (409)
.=.|--| -++++.++.+..+++++.+.++=-|..++
T Consensus 101 ~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~ 160 (265)
T COG0159 101 TYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPD 160 (265)
T ss_pred EeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCH
Confidence 5555433 35666677777788887766777777654
No 162
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=83.67 E-value=20 Score=35.92 Aligned_cols=114 Identities=17% Similarity=0.272 Sum_probs=73.1
Q ss_pred eCCCC----CCHHHHHHHHHHHHhCCCCCceeec--CCCC-CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHc
Q 015289 235 DANEG----YKPQEAVEVLEKLYEMGVTPVLFEQ--PVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307 (409)
Q Consensus 235 DaN~~----w~~~~A~~~~~~L~~~~l~~~~iEe--P~~~-~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 307 (409)
|.+|+ |+.++-+++++.|.+.|+. .||= |... .+++.++++.+. ..+..++.= .-.+..+++.+++.
T Consensus 11 DG~Q~~~~~~s~~~k~~ia~~L~~~Gv~--~IEvG~p~~~~~~~e~i~~i~~~---~~~~~i~~~-~r~~~~di~~a~~~ 84 (365)
T TIGR02660 11 DGEQAPGVAFTAAEKLAIARALDEAGVD--ELEVGIPAMGEEERAVIRAIVAL---GLPARLMAW-CRARDADIEAAARC 84 (365)
T ss_pred CcCcCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCCCCHHHHHHHHHHHHc---CCCcEEEEE-cCCCHHHHHHHHcC
Confidence 66664 7899999999999999986 9998 4332 345666666541 223344321 22467888888887
Q ss_pred CCCCEEEeCCCC--------Cc------HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHH
Q 015289 308 NLADVINIKLAK--------VG------VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAG 355 (409)
Q Consensus 308 ~a~div~~k~~~--------~G------i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~ 355 (409)
| +|.+.+=... .| +....+++++|+++|+.+.++++..+.......+
T Consensus 85 g-~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~ 145 (365)
T TIGR02660 85 G-VDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLV 145 (365)
T ss_pred C-cCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHH
Confidence 6 5666543322 11 2234578999999999999887654433333333
No 163
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=83.66 E-value=25 Score=32.89 Aligned_cols=115 Identities=15% Similarity=0.222 Sum_probs=76.4
Q ss_pred HHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhC-CCcEEEEeCCC------CCCH---HHHHHHHHHHHhCCCCCce
Q 015289 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILDANE------GYKP---QEAVEVLEKLYEMGVTPVL 261 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~-~~~~l~vDaN~------~w~~---~~A~~~~~~L~~~~l~~~~ 261 (409)
+.++++.+.|...+ =+|.-.-+|.+.++.+.+.+ ..+-+.+|... +|.. -+..++++.+++.++. ..
T Consensus 89 e~v~~~l~~Ga~kv--vigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~-~i 165 (234)
T PRK13587 89 SQIMDYFAAGINYC--IVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLG-GI 165 (234)
T ss_pred HHHHHHHHCCCCEE--EECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCC-EE
Confidence 34566677777654 56654456788888888885 45778899743 3532 1235677778877653 22
Q ss_pred eecCCCC------CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015289 262 FEQPVHR------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314 (409)
Q Consensus 262 iEeP~~~------~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~ 314 (409)
|=--+.. .|++.++++.+ .+++||...=-+.+.+|+.++.+.| ++.+.
T Consensus 166 i~tdi~~dGt~~G~~~~li~~l~~----~~~ipvi~~GGi~s~edi~~l~~~G-~~~vi 219 (234)
T PRK13587 166 IYTDIAKDGKMSGPNFELTGQLVK----ATTIPVIASGGIRHQQDIQRLASLN-VHAAI 219 (234)
T ss_pred EEecccCcCCCCccCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcC-CCEEE
Confidence 3222322 36766777753 5689999998999999999999876 45553
No 164
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=83.41 E-value=16 Score=35.57 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=44.5
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 286 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 286 ~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++||++-=-..+.+.+.++++.| ++.+|+|-+..- +..++++.++|+++|+.+.
T Consensus 77 ~vPV~lHLDH~~~~~i~~ai~~G-ftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE 134 (293)
T PRK07315 77 TVPVAIHLDHGHYEDALECIEVG-YTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVE 134 (293)
T ss_pred CCcEEEECCCCCHHHHHHHHHcC-CCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 67999764444888899999877 799999998875 4568899999999999984
No 165
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=83.39 E-value=27 Score=35.61 Aligned_cols=153 Identities=13% Similarity=0.153 Sum_probs=90.1
Q ss_pred eeeeeecCC-CHHHHHHHHHHHHHcCCCeEEEecCC---------------ChhHHHHHHHHHHhhCCCcEEEEeCCCCC
Q 015289 177 TTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVGK---------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 240 (409)
Q Consensus 177 ~~~~~i~~~-~~~~~~~~~~~~~~~Gf~~~KiKvG~---------------~~~~d~~~l~avr~~~~~~~l~vDaN~~w 240 (409)
|+..++... +++++.+.++.+.+.|+..|-+.++- +++.-.+.++++++.. ++.+.+=-.-.+
T Consensus 101 p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKl~p~~ 179 (420)
T PRK08318 101 ALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS-RLPVIVKLTPNI 179 (420)
T ss_pred eEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc-CCcEEEEcCCCc
Confidence 444555555 68888888888877899999988761 2223344556666642 345555543322
Q ss_pred CHHHHHHHHHHHHhCCCCCce------------ee----cC-CCCC--------------CHHHHHHhHHHhhccC---C
Q 015289 241 KPQEAVEVLEKLYEMGVTPVL------------FE----QP-VHRD--------------DWEGLGHVSHIAKDKF---G 286 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~------------iE----eP-~~~~--------------d~~~~~~l~~~~~~~~---~ 286 (409)
.+..++++.+++.|+.-.- +| .| ++.. .++..++++ +.. +
T Consensus 180 --~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~----~~~~~~~ 253 (420)
T PRK08318 180 --TDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIA----RDPETRG 253 (420)
T ss_pred --ccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHH----hccccCC
Confidence 2345677778777643111 12 13 2110 133333443 333 7
Q ss_pred CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCC--c--HH-HH-HHHHHHHHHcCC
Q 015289 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKV--G--VL-GA-LEIIEVVRASGL 337 (409)
Q Consensus 287 ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~--G--i~-~~-~~i~~~A~~~gi 337 (409)
+||.+-=-+.+.+|+.+++..| +|.||+=-+-. | +. .. ..+.++.+++|+
T Consensus 254 ipIig~GGI~s~~da~e~i~aG-A~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~g~ 309 (420)
T PRK08318 254 LPISGIGGIETWRDAAEFILLG-AGTVQVCTAAMQYGFRIVEDMISGLSHYMDEKGF 309 (420)
T ss_pred CCEEeecCcCCHHHHHHHHHhC-CChheeeeeeccCCchhHHHHHHHHHHHHHHcCc
Confidence 9999988899999999999987 59988754432 4 21 21 234456666764
No 166
>PLN02591 tryptophan synthase
Probab=83.12 E-value=43 Score=31.77 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCCC
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHR 268 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~ 268 (409)
..++..++.+.++++++.+.++=-|..+
T Consensus 116 P~ee~~~~~~~~~~~gl~~I~lv~Ptt~ 143 (250)
T PLN02591 116 PLEETEALRAEAAKNGIELVLLTTPTTP 143 (250)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 4567777777778777765555555543
No 167
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=82.96 E-value=19 Score=34.83 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=45.6
Q ss_pred CCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 286 GVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 286 ~ipIa~d-Es~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++||++- ....+++...++++.| ++-|.+|-+..= +..++++.++|+++|+.+-
T Consensus 77 ~VPV~lHLDHg~~~e~i~~ai~~G-ftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VE 135 (285)
T PRK07709 77 TVPVAIHLDHGSSFEKCKEAIDAG-FTSVMIDASHHPFEENVETTKKVVEYAHARNVSVE 135 (285)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3899976 3466889999999998 699999999874 5668999999999999884
No 168
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=82.94 E-value=43 Score=34.89 Aligned_cols=117 Identities=18% Similarity=0.256 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceee----
Q 015289 189 EAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---- 263 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE---- 263 (409)
+..+.++.++++|.+.+=+... .....-++.++.||+.+|++.+++| ..-|.+++.... +.|.. .|-
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g--~~~t~~~~~~l~----~~G~d--~i~vg~g 296 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAG--NVVSAEGVRDLL----EAGAN--IIKVGVG 296 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEe--ccCCHHHHHHHH----HhCCC--EEEECCc
Confidence 4456778888899999888775 2335566778899988999999983 245666665444 34432 332
Q ss_pred -------c---CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 264 -------Q---PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 264 -------e---P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
. .+..-......++++.++ ..++||.+|--+.+..|+.+.+..|+ |.+.+
T Consensus 297 ~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~-~~~~~viadGgi~~~~di~kala~GA-~~vm~ 356 (475)
T TIGR01303 297 PGAMCTTRMMTGVGRPQFSAVLECAAEAR-KLGGHVWADGGVRHPRDVALALAAGA-SNVMV 356 (475)
T ss_pred CCccccCccccCCCCchHHHHHHHHHHHH-HcCCcEEEeCCCCCHHHHHHHHHcCC-CEEee
Confidence 0 111112333334433333 34899999999999999999999885 66654
No 169
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=81.77 E-value=29 Score=33.59 Aligned_cols=115 Identities=22% Similarity=0.383 Sum_probs=74.6
Q ss_pred HHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhh-C-CCcE----E----------EEeCCC-CC-CHHHHHHHHHHH
Q 015289 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDSS----F----------ILDANE-GY-KPQEAVEVLEKL 252 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~-~-~~~~----l----------~vDaN~-~w-~~~~A~~~~~~L 252 (409)
+.+.++++.||+.+=+... .++++.++..+.+.+. . -++. | ..|.+. .| ++++|.+|+++.
T Consensus 88 e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~T 167 (284)
T PRK12737 88 DDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERT 167 (284)
T ss_pred HHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHh
Confidence 4456778889999998876 4677777777666552 1 1111 1 112222 26 599999999875
Q ss_pred Hh----------CCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 253 YE----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 253 ~~----------~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
.- .|+ |-.+| .-|++-++++++ .+++|+.+ |=|=...++++++++.|. .=+|+.
T Consensus 168 gvD~LAvaiGt~HG~---y~~~p--~Ld~~~L~~I~~----~~~iPLVlHGgSG~~~e~~~kai~~Gi-~KiNi~ 232 (284)
T PRK12737 168 GIDSLAVAIGTAHGL---YKGEP--KLDFERLAEIRE----KVSIPLVLHGASGVPDEDVKKAISLGI-CKVNVA 232 (284)
T ss_pred CCCEEeeccCccccc---cCCCC--cCCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHHCCC-eEEEeC
Confidence 31 232 44555 457888888875 56888885 456666778999999884 334554
No 170
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=81.72 E-value=22 Score=32.58 Aligned_cols=95 Identities=21% Similarity=0.269 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCCCCCH-HHHHHhHHHhhccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW-EGLGHVSHIAKDKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~-~~~~~l~~~~~~~~~ipIa~d-Es~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
+.+++.+.++.+-+.|+. .+|=.+...+. +.++.+++ +.+.++..| =++.+.+++..+++.|+ |++..- .
T Consensus 20 ~~~~~~~~~~a~~~gGi~--~iEvt~~~~~~~~~i~~l~~----~~~~~~~iGaGTV~~~~~~~~a~~aGA-~fivsp-~ 91 (206)
T PRK09140 20 TPDEALAHVGALIEAGFR--AIEIPLNSPDPFDSIAALVK----ALGDRALIGAGTVLSPEQVDRLADAGG-RLIVTP-N 91 (206)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCccHHHHHHHHHH----HcCCCcEEeEEecCCHHHHHHHHHcCC-CEEECC-C
Confidence 789999999999999986 89988775543 33455543 444333333 36889999999999985 877541 1
Q ss_pred CCcHHHHHHHHHHHHHcCCcEEEccCCchH
Q 015289 319 KVGVLGALEIIEVVRASGLNLMIGGMVETR 348 (409)
Q Consensus 319 ~~Gi~~~~~i~~~A~~~gi~~~~~~~~es~ 348 (409)
.. ..+...++..|+.+.+|++..+.
T Consensus 92 ---~~--~~v~~~~~~~~~~~~~G~~t~~E 116 (206)
T PRK09140 92 ---TD--PEVIRRAVALGMVVMPGVATPTE 116 (206)
T ss_pred ---CC--HHHHHHHHHCCCcEEcccCCHHH
Confidence 11 46677888999999999875444
No 171
>PRK08185 hypothetical protein; Provisional
Probab=81.61 E-value=19 Score=34.84 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=47.4
Q ss_pred ccCCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 283 DKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 283 ~~~~ipIa~dE-s~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++..+||++-= ...+++.++++++.| ++.|++|-+..- +..++++..+|+.+|+.+.
T Consensus 65 ~~~~vPV~lHLDHg~~~e~i~~ai~~G-f~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE 126 (283)
T PRK08185 65 KRSPVPFVIHLDHGATIEDVMRAIRCG-FTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVE 126 (283)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 46789999763 456889999999987 699999988874 5568899999999999984
No 172
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=81.60 E-value=43 Score=30.72 Aligned_cols=109 Identities=17% Similarity=0.249 Sum_probs=71.4
Q ss_pred HHHHHHHHcCCCeEEEecCC--Chh--HHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee--ec-
Q 015289 192 ELASKYRKQGFTTLKLKVGK--NLK--EDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF--EQ- 264 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG~--~~~--~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i--Ee- 264 (409)
++++.+.+.|-..+=+.... .+. ...+.++++++.+ ++.++++.+ +.+++ ..+.+.+.. |+ +-
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~---t~~ea----~~a~~~G~d--~i~~~~~ 152 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADIS---TLEEA----LNAAKLGFD--IIGTTLS 152 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECC---CHHHH----HHHHHcCCC--EEEccCc
Confidence 35666777888766654331 122 4556777888878 788888664 56665 334455653 44 20
Q ss_pred ---C----CCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 265 ---P----VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 265 ---P----~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+ ....+++.++++++ ..++||..+=-+.+.+++.++++.| +|.+.+
T Consensus 153 g~t~~~~~~~~~~~~~l~~i~~----~~~ipvia~GGI~~~~~~~~~l~~G-adgV~v 205 (219)
T cd04729 153 GYTEETAKTEDPDFELLKELRK----ALGIPVIAEGRINSPEQAAKALELG-ADAVVV 205 (219)
T ss_pred cccccccCCCCCCHHHHHHHHH----hcCCCEEEeCCCCCHHHHHHHHHCC-CCEEEE
Confidence 0 11224555666653 4589999988899999999999988 788765
No 173
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=81.53 E-value=30 Score=33.51 Aligned_cols=115 Identities=17% Similarity=0.307 Sum_probs=74.4
Q ss_pred HHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhh-C-CCcE----E----------EEeCC-CCC-CHHHHHHHHHHH
Q 015289 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDSS----F----------ILDAN-EGY-KPQEAVEVLEKL 252 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~-~-~~~~----l----------~vDaN-~~w-~~~~A~~~~~~L 252 (409)
+.+.++++.||+.+=+... .++++.++..+.+.+. . -++. | ..+.+ ..| ++++|.+|+++.
T Consensus 88 e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~T 167 (284)
T PRK09195 88 DDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEAT 167 (284)
T ss_pred HHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHH
Confidence 4466777889999999876 4677788777766652 1 1111 1 11111 225 599999999864
Q ss_pred H----------hCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 253 Y----------EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 253 ~----------~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~d-Es~~~~~~~~~~i~~~a~div~~k 316 (409)
. -.|+ |-.+| .-|++-++++++ .+++|+.+- =|=...++++++++.|.. =+|+.
T Consensus 168 gvD~LAvaiGt~HG~---y~~~p--~Ld~~~L~~I~~----~~~vPLVLHGgSG~~~e~~~~ai~~Gi~-KiNi~ 232 (284)
T PRK09195 168 GIDSLAVAIGTAHGM---YKGEP--KLDFDRLENIRQ----WVNIPLVLHGASGLPTKDIQQTIKLGIC-KVNVA 232 (284)
T ss_pred CcCEEeeccCccccc---cCCCC--cCCHHHHHHHHH----HhCCCeEEecCCCCCHHHHHHHHHcCCe-EEEeC
Confidence 3 1232 44555 458888888875 568998854 555666789999998853 34553
No 174
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=81.42 E-value=27 Score=33.85 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=67.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCceeecCCCC----CCHHHHHHhHHHhhccC--CCeEEeC-CCCCCHHHHHHHHHcC
Q 015289 236 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR----DDWEGLGHVSHIAKDKF--GVSVAAD-ESCRSLDDVKKIVKGN 308 (409)
Q Consensus 236 aN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~----~d~~~~~~l~~~~~~~~--~ipIa~d-Es~~~~~~~~~~i~~~ 308 (409)
|-..++.+.+..+++..++.+- |..|+=.-.. ..++.+....+...++. .+||++- ....+.+.+.+.++.|
T Consensus 22 AfN~~n~e~~~avi~AAee~~s-PvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~G 100 (288)
T TIGR00167 22 AFNINNLETINAVLEAAAEEKS-PVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAVKAG 100 (288)
T ss_pred EEEECCHHHHHHHHHHHHHHCC-CEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHHHcC
Confidence 3344566666666666666553 3344311110 11222333322223355 7899976 4567889999999987
Q ss_pred CCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 309 LADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 309 a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++-+.+|-+..= +..++++.++|+.+|+.+-
T Consensus 101 -ftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VE 135 (288)
T TIGR00167 101 -FSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVE 135 (288)
T ss_pred -CCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 799999999864 5568999999999999874
No 175
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=81.37 E-value=17 Score=35.28 Aligned_cols=53 Identities=15% Similarity=0.279 Sum_probs=45.1
Q ss_pred CeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 287 VSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 287 ipIa~d-Es~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
+||++- ....+++.+.++++.| ++-+.+|-+..- +..++++.++|+++|+.+-
T Consensus 78 vPV~lHLDHg~~~e~i~~ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VE 135 (286)
T PRK08610 78 IPVAIHLDHGSSFEKCKEAIDAG-FTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVE 135 (286)
T ss_pred CCEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 899976 3566889999999997 699999999874 5668999999999999874
No 176
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=81.31 E-value=17 Score=34.27 Aligned_cols=131 Identities=14% Similarity=0.149 Sum_probs=88.0
Q ss_pred eeeeeee--cCCC-HHHHHHHHHHHHHcCCCeEEEe---cC------CChhHHHHHHHHHHhh--CCCcEE--EEeCCC-
Q 015289 176 ITTDITI--PIVS-PAEAAELASKYRKQGFTTLKLK---VG------KNLKEDIEVLRAIRAV--HPDSSF--ILDANE- 238 (409)
Q Consensus 176 i~~~~~i--~~~~-~~~~~~~~~~~~~~Gf~~~KiK---vG------~~~~~d~~~l~avr~~--~~~~~l--~vDaN~- 238 (409)
+|+...+ |..+ +.++.+-++++.+.|.-.+-|. .| .+.++-+++|++++++ .+++-| |.|+-.
T Consensus 70 iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~ 149 (238)
T PF13714_consen 70 IPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLR 149 (238)
T ss_dssp SEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCH
T ss_pred CcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEecccccc
Confidence 4444332 4445 8899999999999999888763 33 2556778899999986 356544 678854
Q ss_pred -CCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 239 -GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 239 -~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
....++|++.++...+.|....|+|-+.. .+.++++.+ +.+.|+..-.. .+..++.++.+.| +..+..
T Consensus 150 ~~~~~deaI~R~~aY~eAGAD~ifi~~~~~---~~~i~~~~~----~~~~Pl~v~~~-~~~~~~~eL~~lG-v~~v~~ 218 (238)
T PF13714_consen 150 AEEGLDEAIERAKAYAEAGADMIFIPGLQS---EEEIERIVK----AVDGPLNVNPG-PGTLSAEELAELG-VKRVSY 218 (238)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SEEEETTSSS---HHHHHHHHH----HHSSEEEEETT-SSSS-HHHHHHTT-ESEEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCC---HHHHHHHHH----hcCCCEEEEcC-CCCCCHHHHHHCC-CcEEEE
Confidence 66789999999999999887678888754 444677765 45788887653 3235566677777 455433
No 177
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=81.10 E-value=36 Score=30.84 Aligned_cols=121 Identities=17% Similarity=0.192 Sum_probs=72.1
Q ss_pred HHHHHHHHcCCCeEEEecC--CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhC---CCCCceeecCC
Q 015289 192 ELASKYRKQGFTTLKLKVG--KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEM---GVTPVLFEQPV 266 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG--~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~---~l~~~~iEeP~ 266 (409)
++++.+.+.|-..+=+..- ..+..-.+.++.+|+.+ .-+|.|+. |.++++...+.=-++ -+. -|-++--
T Consensus 55 ~ev~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~--~l~MADis---t~ee~~~A~~~G~D~I~TTLs-GYT~~t~ 128 (192)
T PF04131_consen 55 KEVDALAEAGADIIALDATDRPRPETLEELIREIKEKY--QLVMADIS---TLEEAINAAELGFDIIGTTLS-GYTPYTK 128 (192)
T ss_dssp HHHHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCT--SEEEEE-S---SHHHHHHHHHTT-SEEE-TTT-TSSTTST
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHhC--cEEeeecC---CHHHHHHHHHcCCCEEEcccc-cCCCCCC
Confidence 4566677889998888765 22345566788999988 89999984 577775543321110 000 1333333
Q ss_pred C-CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc--HHHHHHHH
Q 015289 267 H-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG--VLGALEII 329 (409)
Q Consensus 267 ~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G--i~~~~~i~ 329 (409)
. .-|++-+++|.+ .++||.+.=.++++++..++++.|+.-++ +| +|+-..+.
T Consensus 129 ~~~pD~~lv~~l~~-----~~~pvIaEGri~tpe~a~~al~~GA~aVV------VGsAITrP~~It 183 (192)
T PF04131_consen 129 GDGPDFELVRELVQ-----ADVPVIAEGRIHTPEQAAKALELGAHAVV------VGSAITRPQEIT 183 (192)
T ss_dssp TSSHHHHHHHHHHH-----TTSEEEEESS--SHHHHHHHHHTT-SEEE------E-HHHH-HHHHH
T ss_pred CCCCCHHHHHHHHh-----CCCcEeecCCCCCHHHHHHHHhcCCeEEE------ECcccCCHHHHH
Confidence 2 235666666653 38999888899999999999999975543 36 77665543
No 178
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=81.06 E-value=39 Score=32.64 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=46.4
Q ss_pred ccCCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcE
Q 015289 283 DKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNL 339 (409)
Q Consensus 283 ~~~~ipIa~dE-s~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~ 339 (409)
++.++||++-= ...+.+.+.++++.| ++-|.+|-+..= +..++++.++|+.+|+.+
T Consensus 71 ~~~~vPV~lHLDH~~~~e~i~~Ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~V 131 (283)
T PRK07998 71 DKMDVPVSLHLDHGKTFEDVKQAVRAG-FTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPV 131 (283)
T ss_pred HHCCCCEEEECcCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 46789999653 456888999999987 699999998864 556899999999999987
No 179
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=80.95 E-value=32 Score=33.23 Aligned_cols=115 Identities=18% Similarity=0.314 Sum_probs=74.1
Q ss_pred HHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhh-C-CCcE----E----------EEeCC-CCC-CHHHHHHHHHHH
Q 015289 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDSS----F----------ILDAN-EGY-KPQEAVEVLEKL 252 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~-~-~~~~----l----------~vDaN-~~w-~~~~A~~~~~~L 252 (409)
+.+.++.+.||+.+=+... .++++.++..+.+.+. . -++. | ..+.+ ..| ++++|.+|+++.
T Consensus 86 e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~T 165 (282)
T TIGR01858 86 DDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEAT 165 (282)
T ss_pred HHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHH
Confidence 3456677889999999876 4677888877776652 1 1111 1 11111 225 489999998864
Q ss_pred Hh----------CCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 253 YE----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 253 ~~----------~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~d-Es~~~~~~~~~~i~~~a~div~~k 316 (409)
.- .|+ |-.+| .-|++-++++++ .+++|+.+- =|=...++++++++.|.. =+|+.
T Consensus 166 gvD~LAvaiGt~HG~---yk~~p--~Ldf~~L~~I~~----~~~iPLVlHGgSG~~~e~~~~ai~~Gi~-KiNi~ 230 (282)
T TIGR01858 166 GVDSLAVAIGTAHGL---YKKTP--KLDFDRLAEIRE----VVDVPLVLHGASDVPDEDVRRTIELGIC-KVNVA 230 (282)
T ss_pred CcCEEecccCccccC---cCCCC--ccCHHHHHHHHH----HhCCCeEEecCCCCCHHHHHHHHHcCCe-EEEeC
Confidence 31 232 44555 458888898875 568998854 455566789999998843 34553
No 180
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=80.94 E-value=28 Score=34.92 Aligned_cols=103 Identities=21% Similarity=0.381 Sum_probs=70.6
Q ss_pred eCCC----CCCHHHHHHHHHHHHhCCCCCceeec--CCC-CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHc
Q 015289 235 DANE----GYKPQEAVEVLEKLYEMGVTPVLFEQ--PVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307 (409)
Q Consensus 235 DaN~----~w~~~~A~~~~~~L~~~~l~~~~iEe--P~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 307 (409)
|.+| .|+.++-+++++.|.+.|+. +||= |.. +++++.++.+.+ ......|+.- .-.+..+++.+++.
T Consensus 10 DG~Q~~~~~~s~~~k~~ia~~L~~~Gv~--~IEvG~p~~~~~~~e~i~~i~~---~~~~~~v~~~-~r~~~~di~~a~~~ 83 (363)
T TIGR02090 10 DGEQTPGVSLTVEQKVEIARKLDELGVD--VIEAGFPIASEGEFEAIKKISQ---EGLNAEICSL-ARALKKDIDKAIDC 83 (363)
T ss_pred CcCCCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCCCChHHHHHHHHHHh---cCCCcEEEEE-cccCHHHHHHHHHc
Confidence 5555 46889999999999999986 8996 644 355666666654 2334555531 13567899999988
Q ss_pred CCCCEEEeCC-----------CCC--c-HHHHHHHHHHHHHcCCcEEEccC
Q 015289 308 NLADVINIKL-----------AKV--G-VLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 308 ~a~div~~k~-----------~~~--G-i~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
| +|.+.+=. .+. . +..+.+.+++|+++|+.+.++.+
T Consensus 84 g-~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 84 G-VDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred C-cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 7 67777621 111 1 34567899999999999887643
No 181
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=80.77 E-value=24 Score=34.15 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=47.4
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 283 ~~~~ipIa~d-Es~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++..+||++- ....+.+.+.++++.| ++-|.+|-+..= +..++++.++|+.+|+.+-
T Consensus 71 ~~~~VPValHLDH~~~~e~i~~ai~~G-ftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVE 132 (284)
T PRK12857 71 EKASVPVALHLDHGTDFEQVMKCIRNG-FTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVE 132 (284)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3678999976 4566888999999987 699999998864 5568999999999999874
No 182
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=80.50 E-value=12 Score=39.02 Aligned_cols=116 Identities=22% Similarity=0.354 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHcCCCeEEEecCCC-hhHHHHHHHHHHhhCCCcEEEE-eCCCCCCHHHHHHHHHHHHhCCCCCceee---
Q 015289 189 EAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVEVLEKLYEMGVTPVLFE--- 263 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf~~~KiKvG~~-~~~d~~~l~avr~~~~~~~l~v-DaN~~w~~~~A~~~~~~L~~~~l~~~~iE--- 263 (409)
+..+.++.++++|.+.+=+..... -..-++.++.||+.+|++.++. |. -|.++|...++ .|.. .|=
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv---~t~~~a~~l~~----aGad--~v~vgi 297 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNV---VTAEGTRDLVE----AGAD--IVKVGV 297 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeecc---CCHHHHHHHHH----cCCC--EEEECc
Confidence 455777888889998887776532 2345667888999899988886 43 34666554443 3332 222
Q ss_pred cC-----------CCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 264 QP-----------VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 264 eP-----------~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
-| +..-++....++++.++ ..++||.+|-.+.+..|+.+.+..|+ |.+++
T Consensus 298 g~gsictt~~~~~~~~p~~~av~~~~~~~~-~~~~~via~ggi~~~~~~~~al~~ga-~~v~~ 358 (479)
T PRK07807 298 GPGAMCTTRMMTGVGRPQFSAVLECAAAAR-ELGAHVWADGGVRHPRDVALALAAGA-SNVMI 358 (479)
T ss_pred cCCcccccccccCCchhHHHHHHHHHHHHH-hcCCcEEecCCCCCHHHHHHHHHcCC-Ceeec
Confidence 01 11236667777765432 56899999999999999999999885 76655
No 183
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=80.48 E-value=34 Score=33.87 Aligned_cols=141 Identities=13% Similarity=0.053 Sum_probs=78.7
Q ss_pred HHHHHHcCCCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEE-EeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCH
Q 015289 194 ASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 271 (409)
Q Consensus 194 ~~~~~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~-vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~ 271 (409)
++.+.+.|.+.+.+-... +.+.-.+.++.+|+.|.++... .|+ ..+++++..++++.+.+++....+|-+-.-.-..
T Consensus 93 l~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s-~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P 171 (333)
T TIGR03217 93 LKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMS-HMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLP 171 (333)
T ss_pred HHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcc-cCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCH
Confidence 455566777777765542 2233445566667766554333 333 4567888888888888887665677777776666
Q ss_pred HHHHHhHHHhhccCC--CeEEeCCC-CCCH--HHHHHHHHcCCCCEEEeCCCCCc---H---HHHHHHHHHHHHcCCc
Q 015289 272 EGLGHVSHIAKDKFG--VSVAADES-CRSL--DDVKKIVKGNLADVINIKLAKVG---V---LGALEIIEVVRASGLN 338 (409)
Q Consensus 272 ~~~~~l~~~~~~~~~--ipIa~dEs-~~~~--~~~~~~i~~~a~div~~k~~~~G---i---~~~~~i~~~A~~~gi~ 338 (409)
+...++.+.+++..+ +||..-=. -.++ .....+++.| ++. +|.+-.| . ...-.++...+..|+.
T Consensus 172 ~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aG-a~~--iD~Sl~G~G~~aGN~~~E~lv~~l~~~g~~ 246 (333)
T TIGR03217 172 DDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAG-ATR--IDASLRGLGAGAGNAPLEVFVAVLDRLGWN 246 (333)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhC-CCE--EEeecccccccccCccHHHHHHHHHhcCCC
Confidence 666665555555554 66654221 1111 2334455665 465 4444433 2 1233445556665554
No 184
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=80.18 E-value=30 Score=33.84 Aligned_cols=57 Identities=12% Similarity=0.265 Sum_probs=47.2
Q ss_pred ccCC-CeEEeCC-CCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 283 DKFG-VSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 283 ~~~~-ipIa~dE-s~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++.. +||++-= ...+.+...++++.| ++-|++|-+..= +..++++.++|+++|+.+-
T Consensus 70 ~~~~~VPValHLDHg~~~e~i~~ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VE 132 (307)
T PRK05835 70 ERYPHIPVALHLDHGTTFESCEKAVKAG-FTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVE 132 (307)
T ss_pred HhcCCCeEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3554 9999763 466889999999997 799999999864 5678999999999999874
No 185
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=79.61 E-value=17 Score=36.78 Aligned_cols=99 Identities=18% Similarity=0.290 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCC
Q 015289 214 KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE 293 (409)
Q Consensus 214 ~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE 293 (409)
+.|-++++.+.+++-| -+.+|..|+.+.-| +++++.+++. . ..+.|.+|
T Consensus 250 e~dK~rl~ll~~aGvd-vviLDSSqGnS~~q-iemik~iK~~----------y------------------P~l~ViaG- 298 (503)
T KOG2550|consen 250 DDDKERLDLLVQAGVD-VVILDSSQGNSIYQ-LEMIKYIKET----------Y------------------PDLQIIAG- 298 (503)
T ss_pred cchhHHHHHhhhcCCc-EEEEecCCCcchhH-HHHHHHHHhh----------C------------------CCceeecc-
Confidence 4566666666665433 35567777776555 3554444331 1 12344444
Q ss_pred CCCCHHHHHHHHHcCCCCEEEe-----------CCCCCc---HHHHHHHHHHHHHcCCcEEEccC
Q 015289 294 SCRSLDDVKKIVKGNLADVINI-----------KLAKVG---VLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 294 s~~~~~~~~~~i~~~a~div~~-----------k~~~~G---i~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
++.+.+..+++|.+| +|++.+ +++-|| .+.-.+++++|+.+|++|+--+-
T Consensus 299 NVVT~~qa~nLI~aG-aDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGG 362 (503)
T KOG2550|consen 299 NVVTKEQAANLIAAG-ADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGG 362 (503)
T ss_pred ceeeHHHHHHHHHcc-CceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhcCCceeecCC
Confidence 456777889999988 588754 455566 45568999999999999987543
No 186
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=79.46 E-value=25 Score=33.16 Aligned_cols=95 Identities=18% Similarity=0.213 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCC-------C--------CCHHHHHHHHH
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANE-------G--------YKPQEAVEVLE 250 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~-------~--------w~~~~A~~~~~ 250 (409)
+++++.+-++++.+.|-..+||.=+ .+-+++++++++++==+.=++|+.. + =..+++++.++
T Consensus 87 ~~~~~~~~~~~l~~aGa~gv~iED~---~~~~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ 163 (240)
T cd06556 87 APTAAFELAKTFMRAGAAGVKIEGG---EWHIETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADAL 163 (240)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcCc---HHHHHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHH
Confidence 5688888889999999999999754 2445678888886411223577621 0 12568888999
Q ss_pred HHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEe
Q 015289 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 291 (409)
Q Consensus 251 ~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~ 291 (409)
.+++.|....|+|-+ +.+..+++++ ..++|+..
T Consensus 164 ay~~AGAd~i~~e~~----~~e~~~~i~~----~~~~P~~~ 196 (240)
T cd06556 164 AYAPAGADLIVMECV----PVELAKQITE----ALAIPLAG 196 (240)
T ss_pred HHHHcCCCEEEEcCC----CHHHHHHHHH----hCCCCEEE
Confidence 999998776799965 3455677764 57889875
No 187
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=79.43 E-value=8.4 Score=38.20 Aligned_cols=100 Identities=18% Similarity=0.261 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCceeecCCC-CCCHHHHHHhHHHhh-ccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCC
Q 015289 240 YKPQEAVEVLEKLYEMGVTPVLFEQPVH-RDDWEGLGHVSHIAK-DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 317 (409)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEeP~~-~~d~~~~~~l~~~~~-~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~ 317 (409)
-+.+..++.+.+|++.|-+ .+==-++ .++.+.++++.+.++ ..+.+|+.+|=... ..-....++. +|-+.+.|
T Consensus 28 ~Dv~atv~QI~~L~~aGce--ivRvavp~~~~a~al~~I~~~l~~~g~~iPlVADIHFd-~~lAl~a~~~--v~kiRINP 102 (359)
T PF04551_consen 28 RDVEATVAQIKRLEEAGCE--IVRVAVPDMEAAEALKEIKKRLRALGSPIPLVADIHFD-YRLALEAIEA--VDKIRINP 102 (359)
T ss_dssp T-HHHHHHHHHHHHHCT-S--EEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EEEEESTT-CHHHHHHHHC---SEEEE-T
T ss_pred ccHHHHHHHHHHHHHcCCC--EEEEcCCCHHHHHHHHHHHHhhccCCCCCCeeeecCCC-HHHHHHHHHH--hCeEEECC
Confidence 4566677778888887754 3322222 123455555554221 23789999997744 4445556664 89999999
Q ss_pred CCC--------c-HH-HHHHHHHHHHHcCCcEEEccC
Q 015289 318 AKV--------G-VL-GALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 318 ~~~--------G-i~-~~~~i~~~A~~~gi~~~~~~~ 344 (409)
+.+ | +. ...+++..|+++|+++-+|-.
T Consensus 103 GNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN 139 (359)
T PF04551_consen 103 GNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVN 139 (359)
T ss_dssp TTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEE
T ss_pred CcccccccccccchHHHHHHHHHHHHHCCCCEEEecc
Confidence 999 7 45 467899999999999988654
No 188
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=79.36 E-value=50 Score=32.90 Aligned_cols=103 Identities=14% Similarity=0.157 Sum_probs=63.6
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCceeecCCCC---CCHHHHHHhHHHhhccC-CCeEEeC-CCCCCHHHHHHHHHcCCC
Q 015289 236 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR---DDWEGLGHVSHIAKDKF-GVSVAAD-ESCRSLDDVKKIVKGNLA 310 (409)
Q Consensus 236 aN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~---~d~~~~~~l~~~~~~~~-~ipIa~d-Es~~~~~~~~~~i~~~a~ 310 (409)
|-..++.+.+..+++..++.+- |..|+=--.. ...+-+..+.+.+.++. .+||++- ....+.+...+.++.| +
T Consensus 22 AfN~~n~e~~~avi~AAee~~s-PvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~G-f 99 (347)
T PRK09196 22 AFNVNNLEQVQAIMEAADETDS-PVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVMHQDHGNSPATCQRAIQLG-F 99 (347)
T ss_pred EeeeCCHHHHHHHHHHHHHhCC-CEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcC-C
Confidence 3344555555555555555542 3333321111 11122223222222344 4899976 3456888999999987 6
Q ss_pred CEEEeCCCCC-------c----HHHHHHHHHHHHHcCCcEE
Q 015289 311 DVINIKLAKV-------G----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 311 div~~k~~~~-------G----i~~~~~i~~~A~~~gi~~~ 340 (409)
+-|.+|-+.. - +..++++.++|+.+|+.+-
T Consensus 100 tSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VE 140 (347)
T PRK09196 100 TSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVE 140 (347)
T ss_pred CEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 9999999976 3 5678999999999999874
No 189
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=78.92 E-value=56 Score=30.42 Aligned_cols=140 Identities=16% Similarity=0.164 Sum_probs=95.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHh----hCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCC
Q 015289 184 IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRA----VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTP 259 (409)
Q Consensus 184 ~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~----~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~ 259 (409)
..++++..+.++.+.+-|++.+.+-... ....+.++.+++ .+| .+.+=+..-.|.+|+.+. .+.|.+
T Consensus 23 ~~~~~~a~~~~~al~~gGi~~iEiT~~t--p~a~~~i~~l~~~~~~~~p--~~~vGaGTVl~~e~a~~a----~~aGA~- 93 (222)
T PRK07114 23 HADVEVAKKVIKACYDGGARVFEFTNRG--DFAHEVFAELVKYAAKELP--GMILGVGSIVDAATAALY----IQLGAN- 93 (222)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCC--CcHHHHHHHHHHHHHhhCC--CeEEeeEeCcCHHHHHHH----HHcCCC-
Confidence 4578889999999999999999998853 234455555553 345 478889999999987554 446754
Q ss_pred ceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCC-cHHHHHHHHHHHHHcCCc
Q 015289 260 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLN 338 (409)
Q Consensus 260 ~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~-Gi~~~~~i~~~A~~~gi~ 338 (409)
|+=-|.-..++ + +.++ +.++|+.-| +.++.++...++.| +|++.+=|... |..-...+..-- -+++
T Consensus 94 -FiVsP~~~~~v--~-~~~~----~~~i~~iPG--~~TpsEi~~A~~~G-a~~vKlFPA~~~G~~~ikal~~p~--p~i~ 160 (222)
T PRK07114 94 -FIVTPLFNPDI--A-KVCN----RRKVPYSPG--CGSLSEIGYAEELG-CEIVKLFPGSVYGPGFVKAIKGPM--PWTK 160 (222)
T ss_pred -EEECCCCCHHH--H-HHHH----HcCCCEeCC--CCCHHHHHHHHHCC-CCEEEECcccccCHHHHHHHhccC--CCCe
Confidence 88888754333 2 3222 468888874 78999999999998 59988888765 432222222222 3688
Q ss_pred EEEccCC
Q 015289 339 LMIGGMV 345 (409)
Q Consensus 339 ~~~~~~~ 345 (409)
+++.+-+
T Consensus 161 ~~ptGGV 167 (222)
T PRK07114 161 IMPTGGV 167 (222)
T ss_pred EEeCCCC
Confidence 8887654
No 190
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=78.89 E-value=31 Score=34.33 Aligned_cols=57 Identities=11% Similarity=0.161 Sum_probs=46.4
Q ss_pred ccCC-CeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCC-------c----HHHHHHHHHHHHHcCCcEE
Q 015289 283 DKFG-VSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKV-------G----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 283 ~~~~-ipIa~d-Es~~~~~~~~~~i~~~a~div~~k~~~~-------G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++.. +||++- ....+.....+.++.| ++-|++|-+.. - +..++++.++|+.+|+.+-
T Consensus 69 e~~~~VPValHLDHg~~~e~i~~Ai~~G-FtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVE 138 (347)
T TIGR01521 69 EEYPHIPVVMHQDHGNSPATCQRAIQLG-FTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVE 138 (347)
T ss_pred HhCCCCcEEEECCCCCCHHHHHHHHHcC-CCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 3554 899976 3467889999999997 69999999864 2 5678999999999999874
No 191
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=78.89 E-value=51 Score=30.45 Aligned_cols=174 Identities=20% Similarity=0.238 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecC
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP 265 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP 265 (409)
+.++..+.++.+.+.|+..+-+-....-+.+.+.++.+++..++..+..- .....+.....++.+.+.++. ++.=.
T Consensus 12 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~g~~--~i~i~ 87 (237)
T PF00682_consen 12 STEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPNARLQAL--CRANEEDIERAVEAAKEAGID--IIRIF 87 (237)
T ss_dssp -HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHSSEEEEE--EESCHHHHHHHHHHHHHTTSS--EEEEE
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhccccccee--eeehHHHHHHHHHhhHhccCC--EEEec
Confidence 56677777888888999998776433336788888888887544444332 224555544446777778765 45444
Q ss_pred CCCCC--------------HHHHHHhHHHhhccCCCeEEe---CCCCCCHHHHHHHH----HcCCCCEEEeCCCCCc---
Q 015289 266 VHRDD--------------WEGLGHVSHIAKDKFGVSVAA---DESCRSLDDVKKIV----KGNLADVINIKLAKVG--- 321 (409)
Q Consensus 266 ~~~~d--------------~~~~~~l~~~~~~~~~ipIa~---dEs~~~~~~~~~~i----~~~a~div~~k~~~~G--- 321 (409)
++..+ ++...+..+.++ ..+..+.. +.+-+++..+.++. +.| +|.+.+.=+- |
T Consensus 88 ~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak-~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~i~l~Dt~-G~~~ 164 (237)
T PF00682_consen 88 ISVSDLHIRKNLNKSREEALERIEEAVKYAK-ELGYEVAFGCEDASRTDPEELLELAEALAEAG-ADIIYLADTV-GIMT 164 (237)
T ss_dssp EETSHHHHHHHTCSHHHHHHHHHHHHHHHHH-HTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT--SEEEEEETT-S-S-
T ss_pred CcccHHHHHHhhcCCHHHHHHHHHHHHHHHH-hcCCceEeCccccccccHHHHHHHHHHHHHcC-CeEEEeeCcc-CCcC
Confidence 44445 444544444333 33554443 34566776654444 345 5777665332 4
Q ss_pred HHHHHHHH-HHHHHcC-CcEEEccCCchHHHHHHHHHHHccCCCCceec
Q 015289 322 VLGALEII-EVVRASG-LNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 368 (409)
Q Consensus 322 i~~~~~i~-~~A~~~g-i~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e 368 (409)
.....+++ .+-+.++ +++-+|+.... |++.+..++|....+.++|
T Consensus 165 P~~v~~lv~~~~~~~~~~~l~~H~Hnd~--Gla~An~laA~~aGa~~id 211 (237)
T PF00682_consen 165 PEDVAELVRALREALPDIPLGFHAHNDL--GLAVANALAALEAGADRID 211 (237)
T ss_dssp HHHHHHHHHHHHHHSTTSEEEEEEBBTT--S-HHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHHHHHhccCCeEEEEecCCc--cchhHHHHHHHHcCCCEEE
Confidence 33444444 4445566 77777764433 3444445555444455544
No 192
>PLN02858 fructose-bisphosphate aldolase
Probab=78.60 E-value=35 Score=40.44 Aligned_cols=106 Identities=11% Similarity=0.125 Sum_probs=71.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecC---CCCCCHHHHHHhHHHhhccCCCeEEeCC-CCCCHHHHHHHHHc
Q 015289 232 FILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP---VHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKG 307 (409)
Q Consensus 232 l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP---~~~~d~~~~~~l~~~~~~~~~ipIa~dE-s~~~~~~~~~~i~~ 307 (409)
..|=|-..|+.+.+..+++..++.+- |..|.=- +.....+ +......+.++..+||+..= ...+.+.+.+.++.
T Consensus 1114 yav~afn~~n~e~~~avi~aAe~~~s-PvIl~~~~~~~~~~~~~-~~~~~~~~a~~~~vpV~lHLDHg~~~~~i~~ai~~ 1191 (1378)
T PLN02858 1114 YAVGAFNVYNLEGIEAVVAAAEAEKS-PAILQVHPGALKQGGIP-LVSCCIAAAEQASVPITVHFDHGTSKHELLEALEL 1191 (1378)
T ss_pred cEEEEEEeCCHHHHHHHHHHHHHhCC-CEEEECCccHHhhcCHH-HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHh
Confidence 34445556788888888888887663 3333211 1111122 22211112246789999773 56688999999998
Q ss_pred CCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 308 NLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 308 ~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
| ++-|++|-+..- +..++++.++|+.+|+.+-
T Consensus 1192 G-f~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VE 1227 (1378)
T PLN02858 1192 G-FDSVMVDGSHLSFTENISYTKSISSLAHSKGLMVE 1227 (1378)
T ss_pred C-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 7 699999999874 5668999999999999874
No 193
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=77.95 E-value=18 Score=33.64 Aligned_cols=79 Identities=19% Similarity=0.189 Sum_probs=60.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccC-CCeEEeCCCCCCHHHHHHHHHcCCC
Q 015289 232 FILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLA 310 (409)
Q Consensus 232 l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i~~~a~ 310 (409)
-.-+++...+++++..++...+.+++++.|+|-=-..-+.+-.+++++ .+ ++||..|=-+.+.++++++++.| +
T Consensus 124 ~v~~a~~~~~~e~~~ayA~aae~~g~~ivyLe~SG~~~~~e~I~~v~~----~~~~~pl~vGGGIrs~e~a~~l~~aG-A 198 (219)
T cd02812 124 RVTGAKTDLKPEDAAAYALAAEYLGMPIVYLEYSGAYGPPEVVRAVKK----VLGDTPLIVGGGIRSGEQAKEMAEAG-A 198 (219)
T ss_pred eeeccCcCCCHHHHHHHHHHHHHcCCeEEEeCCCCCcCCHHHHHHHHH----hcCCCCEEEeCCCCCHHHHHHHHHcC-C
Confidence 345666677899999999999999888889992112245555666653 56 89999999999999999999877 4
Q ss_pred CEEEe
Q 015289 311 DVINI 315 (409)
Q Consensus 311 div~~ 315 (409)
|.+.+
T Consensus 199 D~VVV 203 (219)
T cd02812 199 DTIVV 203 (219)
T ss_pred CEEEE
Confidence 77755
No 194
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=77.84 E-value=48 Score=32.14 Aligned_cols=115 Identities=17% Similarity=0.264 Sum_probs=72.8
Q ss_pred HHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhh-C-CCcE----E----------EEeCC-CCC-CHHHHHHHHHHH
Q 015289 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDSS----F----------ILDAN-EGY-KPQEAVEVLEKL 252 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~-~-~~~~----l----------~vDaN-~~w-~~~~A~~~~~~L 252 (409)
+.+.++.+.||+.+=+.-. .++++.++..+.+.+. . -++. | -.+.+ ..| ++++|.+|+++.
T Consensus 88 e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~T 167 (286)
T PRK12738 88 DDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELT 167 (286)
T ss_pred HHHHHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHh
Confidence 4456677889999999876 4677788777766652 1 1111 1 11111 125 599999998865
Q ss_pred Hh----------CCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 253 YE----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 253 ~~----------~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~d-Es~~~~~~~~~~i~~~a~div~~k 316 (409)
.- .|. |-.+| .-|++-++++++ .+++|+.+- =|=...++++++++.|.. =+|+.
T Consensus 168 gvD~LAvaiGt~HG~---Y~~~p--~Ldfd~l~~I~~----~~~vPLVLHGgSG~~~e~~~kai~~GI~-KiNi~ 232 (286)
T PRK12738 168 GVDSLAVAIGTAHGL---YSKTP--KIDFQRLAEIRE----VVDVPLVLHGASDVPDEFVRRTIELGVT-KVNVA 232 (286)
T ss_pred CCCEEEeccCcccCC---CCCCC--cCCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHHcCCe-EEEeC
Confidence 31 222 33333 457888998875 568998854 455567789999998853 34443
No 195
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=77.83 E-value=23 Score=35.22 Aligned_cols=57 Identities=9% Similarity=0.189 Sum_probs=46.3
Q ss_pred ccC-CCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc-----------HHHHHHHHHHHHHcCCcEE
Q 015289 283 DKF-GVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG-----------VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 283 ~~~-~ipIa~d-Es~~~~~~~~~~i~~~a~div~~k~~~~G-----------i~~~~~i~~~A~~~gi~~~ 340 (409)
+.. .+||++- ....+...+.+.++.| ++-|++|-+..- +..++++.++|+.+|+.+-
T Consensus 71 e~~~~VPVaLHLDHg~~~e~i~~Ai~~G-FtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVE 140 (347)
T PRK13399 71 EMYPDIPICLHQDHGNSPATCQSAIRSG-FTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVE 140 (347)
T ss_pred HhcCCCcEEEECCCCCCHHHHHHHHhcC-CCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 345 4899976 3566888999999988 699999988651 5668999999999999874
No 196
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=77.80 E-value=77 Score=33.00 Aligned_cols=131 Identities=14% Similarity=0.168 Sum_probs=73.3
Q ss_pred HHHHHH-HHHHHHHcCCCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEEEeC--CCCCCHHHHHHHHHHHHhCCCCCcee
Q 015289 187 PAEAAE-LASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDA--NEGYKPQEAVEVLEKLYEMGVTPVLF 262 (409)
Q Consensus 187 ~~~~~~-~~~~~~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~vDa--N~~w~~~~A~~~~~~L~~~~l~~~~i 262 (409)
++++.+ .++.+.+.|...|.+-... +++.-...++.+++.|..+...++. ...++.+...++++.+.+.|.....|
T Consensus 93 ~dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i 172 (467)
T PRK14041 93 ADDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICI 172 (467)
T ss_pred cchhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 344333 3455667788777776552 3332233345555555444433432 23466777778888888877665567
Q ss_pred ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCC---CCHHHHHHHHHcCCCCEEEeCCC
Q 015289 263 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESC---RSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 263 EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~---~~~~~~~~~i~~~a~div~~k~~ 318 (409)
=+..---......++-+.++++.++||...=+. .........+++| +|++..-++
T Consensus 173 ~Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaG-ad~vD~sv~ 230 (467)
T PRK14041 173 KDMAGLLTPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAG-ADMFDTAIS 230 (467)
T ss_pred CCccCCcCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhC-CCEEEeecc
Confidence 777666666666666655666667777653221 1122334455665 576554444
No 197
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=77.47 E-value=1.1e+02 Score=35.58 Aligned_cols=159 Identities=15% Similarity=0.165 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHH--cCCCeEEEecCCCh--------hHHHHHHHHHHhhCCCcEEEEeCCC----CCC---HHHHHHHHH
Q 015289 188 AEAAELASKYRK--QGFTTLKLKVGKNL--------KEDIEVLRAIRAVHPDSSFILDANE----GYK---PQEAVEVLE 250 (409)
Q Consensus 188 ~~~~~~~~~~~~--~Gf~~~KiKvG~~~--------~~d~~~l~avr~~~~~~~l~vDaN~----~w~---~~~A~~~~~ 250 (409)
.++...+..+.+ .||..+.+=-|... +.-++||+.+|+..|+..+-+=..+ +|+ .+-...|++
T Consensus 553 ~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~EdPwerl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~f~~ 632 (1143)
T TIGR01235 553 HDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLHEDPWERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKYFVK 632 (1143)
T ss_pred HHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhcCCHHHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHHHHHH
Confidence 456665655554 38888887666322 2347899999999888765322222 243 344455888
Q ss_pred HHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCC----eEEeC-------CCCCCHHH----HHHHHHcCCCCEEEe
Q 015289 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV----SVAAD-------ESCRSLDD----VKKIVKGNLADVINI 315 (409)
Q Consensus 251 ~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~i----pIa~d-------Es~~~~~~----~~~~i~~~a~div~~ 315 (409)
...+.|+.++.+=+++. |.+.++...+..++ .|. -|+.- ...++... ++++.+.| +|.+.+
T Consensus 633 ~~~~~GidifrifD~lN--~~~n~~~~~~~~~~-~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~G-ad~I~i 708 (1143)
T TIGR01235 633 QAAQGGIDIFRVFDSLN--WVENMRVGMDAVAE-AGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAG-AHILGI 708 (1143)
T ss_pred HHHHcCCCEEEECccCc--CHHHHHHHHHHHHH-cCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcC-CCEEEE
Confidence 88899988888888886 56666655444332 232 33321 22455542 34455566 688888
Q ss_pred CCCCCc-H--HHHHHHH-HHHHHcCCcEEEccCCchHHHH
Q 015289 316 KLAKVG-V--LGALEII-EVVRASGLNLMIGGMVETRLAM 351 (409)
Q Consensus 316 k~~~~G-i--~~~~~i~-~~A~~~gi~~~~~~~~es~i~~ 351 (409)
|=+- | + ..+.+++ .+-++.++++.+|+...++++.
T Consensus 709 kDt~-Gll~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~Gla~ 747 (1143)
T TIGR01235 709 KDMA-GLLKPAAAKLLIKALREKTDLPIHFHTHDTSGIAV 747 (1143)
T ss_pred CCCc-CCcCHHHHHHHHHHHHHhcCCeEEEEECCCCCcHH
Confidence 7554 5 3 3455544 4444568999998865455444
No 198
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=77.39 E-value=34 Score=33.13 Aligned_cols=115 Identities=19% Similarity=0.295 Sum_probs=74.6
Q ss_pred HHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhh-C-CCcE----E-EE----e----CCCCC-CHHHHHHHHHHHHh
Q 015289 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDSS----F-IL----D----ANEGY-KPQEAVEVLEKLYE 254 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~-~-~~~~----l-~v----D----aN~~w-~~~~A~~~~~~L~~ 254 (409)
+.+.++++.||+.+=+... .++++.++..+.+.+. . -++. | .| | ....| ++++|.+|+++..-
T Consensus 91 e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~Tgv 170 (285)
T PRK07709 91 EKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGI 170 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCC
Confidence 3455678899999999876 4678888887777652 1 1211 1 01 1 11226 59999999887631
Q ss_pred ----------CCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 255 ----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 255 ----------~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~d-Es~~~~~~~~~~i~~~a~div~~k 316 (409)
.|. |=.+| .-|++-++++++ .+++|+.+- =|=...++++++++.|.. =+|+.
T Consensus 171 D~LAvaiGt~HG~---Y~~~p--~L~~~~L~~I~~----~~~iPLVLHGgSG~~~e~~~~ai~~Gi~-KiNi~ 233 (285)
T PRK07709 171 DCLAPALGSVHGP---YKGEP--NLGFAEMEQVRD----FTGVPLVLHGGTGIPTADIEKAISLGTS-KINVN 233 (285)
T ss_pred CEEEEeecccccC---cCCCC--ccCHHHHHHHHH----HHCCCEEEeCCCCCCHHHHHHHHHcCCe-EEEeC
Confidence 222 33445 457888888865 578998864 455666789999998854 34554
No 199
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=77.25 E-value=51 Score=31.48 Aligned_cols=93 Identities=13% Similarity=0.234 Sum_probs=44.8
Q ss_pred HHcCCCeEEEecC-CChhHHHHHHHHHHhhCCCcEEE-EeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHH
Q 015289 198 RKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 275 (409)
Q Consensus 198 ~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~~~~~~l~-vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~ 275 (409)
.+.|...+.+-+. .+++.-.+.++.+|+.+-.+.+- .|+. +++.+...++++.+.+++..-..|-+.+-.-..+...
T Consensus 92 ~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~-~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~ 170 (266)
T cd07944 92 SGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAIS-GYSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIK 170 (266)
T ss_pred hcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeec-CCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHH
Confidence 3445555554443 22333333444444444333322 2332 3566666666666666655444556665555555555
Q ss_pred HhHHHhhccCC--CeEEe
Q 015289 276 HVSHIAKDKFG--VSVAA 291 (409)
Q Consensus 276 ~l~~~~~~~~~--ipIa~ 291 (409)
++-+.+++..+ +||..
T Consensus 171 ~lv~~l~~~~~~~~~i~~ 188 (266)
T cd07944 171 RIISLLRSNLDKDIKLGF 188 (266)
T ss_pred HHHHHHHHhcCCCceEEE
Confidence 54444444444 55543
No 200
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=77.16 E-value=47 Score=29.97 Aligned_cols=125 Identities=20% Similarity=0.270 Sum_probs=74.9
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCce
Q 015289 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (409)
Q Consensus 182 i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (409)
+...++++..+.++.+ +.|.+.+|+-..-....-.+.++.+|+.+++..+.+|..-. ++.. ..++.+.+.|.. +
T Consensus 6 lD~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~-d~~~--~~~~~~~~~Gad--~ 79 (206)
T TIGR03128 6 LDLLDIEEALELAEKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTM-DAGE--YEAEQAFAAGAD--I 79 (206)
T ss_pred ecCCCHHHHHHHHHHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeec-cchH--HHHHHHHHcCCC--E
Confidence 4556788888888776 67787766621112233467788899887777788886322 3322 125566677754 6
Q ss_pred e----ecCCCCCCHHHHHHhHHHhhccCCCeEEeCC-CCCC-HHHHHHHHHcCCCCEEEeCCCC
Q 015289 262 F----EQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRS-LDDVKKIVKGNLADVINIKLAK 319 (409)
Q Consensus 262 i----EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE-s~~~-~~~~~~~i~~~a~div~~k~~~ 319 (409)
+ |-|. .+...+.+.. + +.++++..+- +..+ ..+++.+.+.+ +|++.+.+..
T Consensus 80 i~vh~~~~~--~~~~~~i~~~---~-~~g~~~~~~~~~~~t~~~~~~~~~~~g-~d~v~~~pg~ 136 (206)
T TIGR03128 80 VTVLGVADD--ATIKGAVKAA---K-KHGKEVQVDLINVKDKVKRAKELKELG-ADYIGVHTGL 136 (206)
T ss_pred EEEeccCCH--HHHHHHHHHH---H-HcCCEEEEEecCCCChHHHHHHHHHcC-CCEEEEcCCc
Confidence 6 6431 1222233322 2 4689998763 4444 35667776664 7999887653
No 201
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=77.00 E-value=74 Score=30.81 Aligned_cols=109 Identities=15% Similarity=0.161 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCceeecCCC------CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCE
Q 015289 239 GYKPQEAVEVLEKLYEMGVTPVLFEQPVH------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADV 312 (409)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEeP~~------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~di 312 (409)
..+++...+.++.+++.+.. .|+==+. ...++.++++++ .+++||..-+ +.+.++.+.+.+.| +|+
T Consensus 125 ~~~~~~~~~~i~~~~~~g~~--~i~l~~~~p~~~~~~~~~~i~~l~~----~~~~pvivK~-v~s~~~a~~a~~~G-~d~ 196 (299)
T cd02809 125 PRDREITEDLLRRAEAAGYK--ALVLTVDTPVLGRRLTWDDLAWLRS----QWKGPLILKG-ILTPEDALRAVDAG-ADG 196 (299)
T ss_pred cCCHHHHHHHHHHHHHcCCC--EEEEecCCCCCCCCCCHHHHHHHHH----hcCCCEEEee-cCCHHHHHHHHHCC-CCE
Confidence 33555555666666666543 4442111 123455666653 5678998876 47788888888877 688
Q ss_pred EEeCCC--C---CcHHHHHHHHHHHHHc--CCcEEEccCCchHHHHHHHH
Q 015289 313 INIKLA--K---VGVLGALEIIEVVRAS--GLNLMIGGMVETRLAMGFAG 355 (409)
Q Consensus 313 v~~k~~--~---~Gi~~~~~i~~~A~~~--gi~~~~~~~~es~i~~~~~~ 355 (409)
+.+.-. + .|...+..+.++++.. .+++...+-+.++.....++
T Consensus 197 I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal 246 (299)
T cd02809 197 IVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKAL 246 (299)
T ss_pred EEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHH
Confidence 766431 1 2333344455555655 48988777665554443333
No 202
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=76.81 E-value=50 Score=28.70 Aligned_cols=112 Identities=21% Similarity=0.145 Sum_probs=70.4
Q ss_pred HHHHHHcCCCeEEEecCCC--hhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCc-----eeecCC
Q 015289 194 ASKYRKQGFTTLKLKVGKN--LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV-----LFEQPV 266 (409)
Q Consensus 194 ~~~~~~~Gf~~~KiKvG~~--~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~-----~iEeP~ 266 (409)
++.+.+.|+..+-+..+.. ++...+.++++|+..+++.+.+..+.....+.+. +.+.++... +.++..
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~-----~~~~g~d~i~~~~~~~~~~~ 151 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAA-----AEEAGVDEVGLGNGGGGGGG 151 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhh-----HHHcCCCEEEEcCCcCCCCC
Confidence 4566678999999887632 2446778889998777788887776655444331 444443311 222221
Q ss_pred CCCCH---HHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 267 HRDDW---EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 267 ~~~d~---~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
...+. ...+.+ +...++||..+=-+.+.+++.++++.| +|++.+
T Consensus 152 ~~~~~~~~~~~~~~----~~~~~~pi~~~GGi~~~~~~~~~~~~G-ad~v~v 198 (200)
T cd04722 152 RDAVPIADLLLILA----KRGSKVPVIAGGGINDPEDAAEALALG-ADGVIV 198 (200)
T ss_pred ccCchhHHHHHHHH----HhcCCCCEEEECCCCCHHHHHHHHHhC-CCEEEe
Confidence 11111 112222 235789999988999989999999986 688764
No 203
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=76.68 E-value=49 Score=32.80 Aligned_cols=141 Identities=11% Similarity=0.036 Sum_probs=76.1
Q ss_pred HHHHHHcCCCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEE-EeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCH
Q 015289 194 ASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 271 (409)
Q Consensus 194 ~~~~~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~-vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~ 271 (409)
++.+.+.|.+.+.+-... +.+.-.+.++.+|+.|.++.+. .|+ ..+++++..++++.+.+++....+|-+-.-.-..
T Consensus 94 l~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a-~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P 172 (337)
T PRK08195 94 LKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMS-HMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLP 172 (337)
T ss_pred HHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEec-cCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCH
Confidence 344556677777765542 2233445566667766554432 344 5667777778888888777655566777666555
Q ss_pred HHHHHhHHHhhccC--CCeEEeCCC-CCC--HHHHHHHHHcCCCCEEEeCCCCCc---HH---HHHHHHHHHHHcCCc
Q 015289 272 EGLGHVSHIAKDKF--GVSVAADES-CRS--LDDVKKIVKGNLADVINIKLAKVG---VL---GALEIIEVVRASGLN 338 (409)
Q Consensus 272 ~~~~~l~~~~~~~~--~ipIa~dEs-~~~--~~~~~~~i~~~a~div~~k~~~~G---i~---~~~~i~~~A~~~gi~ 338 (409)
+...++-+.+++.. ++||..-=. -.+ ......+++.| ++. +|.+-.| .. ..-.++.+.+..|+.
T Consensus 173 ~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aG-a~~--iD~Sl~GlG~~aGN~~tE~lv~~L~~~g~~ 247 (337)
T PRK08195 173 EDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAG-ATR--IDGSLAGLGAGAGNTPLEVLVAVLDRMGWE 247 (337)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhC-CCE--EEecChhhcccccCccHHHHHHHHHhcCCC
Confidence 55655555455454 466654211 111 12334456666 454 4544433 11 223344555555554
No 204
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=76.46 E-value=60 Score=30.50 Aligned_cols=127 Identities=20% Similarity=0.221 Sum_probs=77.0
Q ss_pred eeeecCCCHHHHHHHHHHHHHc-CCCeEEEecCCCh----hHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHH
Q 015289 179 DITIPIVSPAEAAELASKYRKQ-GFTTLKLKVGKNL----KEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKL 252 (409)
Q Consensus 179 ~~~i~~~~~~~~~~~~~~~~~~-Gf~~~KiKvG~~~----~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L 252 (409)
..+.+..+.+|.+..++-.++. |-.-+|+.|-.|. ..-++.+++.++. -.++.++- |.-++ .-.+++|
T Consensus 67 PNTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlP-----Y~~~D-~v~akrL 140 (247)
T PF05690_consen 67 PNTAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLP-----YCTDD-PVLAKRL 140 (247)
T ss_dssp EE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEE-----EE-S--HHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEee-----cCCCC-HHHHHHH
Confidence 3466778888887766666554 6788999986432 2456777777775 35565552 22222 3578889
Q ss_pred HhCCCCCc-eeecCCCC----CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 253 YEMGVTPV-LFEQPVHR----DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 253 ~~~~l~~~-~iEeP~~~----~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
++.|.... =+=-|+-. .+...++.+.+ +.++||..|=-+.++.|....+|.| +|.|.+.
T Consensus 141 ~d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~----~~~vPvIvDAGiG~pSdaa~AMElG-~daVLvN 204 (247)
T PF05690_consen 141 EDAGCAAVMPLGSPIGSGRGIQNPYNLRIIIE----RADVPVIVDAGIGTPSDAAQAMELG-ADAVLVN 204 (247)
T ss_dssp HHTT-SEBEEBSSSTTT---SSTHHHHHHHHH----HGSSSBEEES---SHHHHHHHHHTT--SEEEES
T ss_pred HHCCCCEEEecccccccCcCCCCHHHHHHHHH----hcCCcEEEeCCCCCHHHHHHHHHcC-Cceeehh
Confidence 99875311 22345442 35666666653 5799999999999999999999998 5888775
No 205
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=76.39 E-value=37 Score=32.34 Aligned_cols=98 Identities=17% Similarity=0.364 Sum_probs=64.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCceeec--CCC-CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 239 GYKPQEAVEVLEKLYEMGVTPVLFEQ--PVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEe--P~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
.|+.++-+++++.|.+.|+. .||= |-. +.+.+..+.+.+. .....+.. =...+..++.++.+.| +|.+.+
T Consensus 18 ~~s~~~k~~i~~~L~~~Gv~--~IEvG~P~~~~~~~~~~~~l~~~---~~~~~v~~-~~r~~~~di~~a~~~g-~~~i~i 90 (262)
T cd07948 18 FFDTEDKIEIAKALDAFGVD--YIELTSPAASPQSRADCEAIAKL---GLKAKILT-HIRCHMDDARIAVETG-VDGVDL 90 (262)
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEEECCCCCHHHHHHHHHHHhC---CCCCcEEE-EecCCHHHHHHHHHcC-cCEEEE
Confidence 57899999999999999986 8998 433 2334444444321 11223321 2467888999999876 577766
Q ss_pred CCC--------CCc--H----HHHHHHHHHHHHcCCcEEEcc
Q 015289 316 KLA--------KVG--V----LGALEIIEVVRASGLNLMIGG 343 (409)
Q Consensus 316 k~~--------~~G--i----~~~~~i~~~A~~~gi~~~~~~ 343 (409)
=.+ +.| . ..+.+++++|+++|+.+..+.
T Consensus 91 ~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 91 VFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 321 112 2 335677899999999988764
No 206
>PRK09234 fbiC FO synthase; Reviewed
Probab=76.23 E-value=18 Score=40.42 Aligned_cols=127 Identities=18% Similarity=0.168 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCChhHHH----HHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCce
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDI----EVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~----~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (409)
+++++.+.++++.+.|.+.|-+--|.+++.+. +.+++|++.+|++.+- +|++.+-.. -....++.
T Consensus 558 s~eeI~~~a~ea~~~G~tev~i~gG~~p~~~~~~y~~lir~IK~~~p~i~i~-----afsp~Ei~~---~a~~~Gl~--- 626 (843)
T PRK09234 558 SLDEVADRAWEAWVAGATEVCMQGGIHPELPGTGYADLVRAVKARVPSMHVH-----AFSPMEIVN---GAARLGLS--- 626 (843)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCcCHHHHHHHHHHHHHhCCCeeEE-----ecChHHHHH---HHHHcCCC---
Confidence 67899999999999999999998675443333 4578888888887763 455544221 12223321
Q ss_pred eecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEE
Q 015289 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMI 341 (409)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~ 341 (409)
+| +.+++|+++ .-..+|- +.+.+.+. ++++ .+.+.++...++++++..|++.|+++..
T Consensus 627 ~~--------e~l~~LkeA--GLds~pg-t~aeil~d-~vr~----------~i~p~k~~~~~wle~i~~Ah~lGi~~~s 684 (843)
T PRK09234 627 IR--------EWLTALREA--GLDTIPG-TAAEILDD-EVRW----------VLTKGKLPTAEWIEVVTTAHEVGLRSSS 684 (843)
T ss_pred HH--------HHHHHHHHh--CcCccCC-CchhhCCH-HHHh----------hcCCCCCCHHHHHHHHHHHHHcCCCccc
Confidence 11 234444431 1112342 12222222 2222 1334455556789999999999999865
Q ss_pred ccCC
Q 015289 342 GGMV 345 (409)
Q Consensus 342 ~~~~ 345 (409)
+.|+
T Consensus 685 tmm~ 688 (843)
T PRK09234 685 TMMY 688 (843)
T ss_pred ceEE
Confidence 5443
No 207
>PRK15108 biotin synthase; Provisional
Probab=75.40 E-value=44 Score=33.23 Aligned_cols=103 Identities=19% Similarity=0.287 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCcee----ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 240 YKPQEAVEVLEKLYEMGVTPVLF----EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~i----EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
.++++..+.++...+.|+.-.-+ ++|.. .+++.+.++.+.++ +.++.++.-=...+.+.++++.++| +|.+++
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~-~~~e~i~~~i~~ik-~~~i~v~~s~G~ls~e~l~~LkeAG-ld~~n~ 152 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHE-RDMPYLEQMVQGVK-AMGLETCMTLGTLSESQAQRLANAG-LDYYNH 152 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCc-chHHHHHHHHHHHH-hCCCEEEEeCCcCCHHHHHHHHHcC-CCEEee
Confidence 35666666666655544321111 23422 12343444433333 2345554322234556666666665 565554
Q ss_pred C----------CCCCc-HHHHHHHHHHHHHcCCcEEEccCC
Q 015289 316 K----------LAKVG-VLGALEIIEVVRASGLNLMIGGMV 345 (409)
Q Consensus 316 k----------~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~ 345 (409)
+ +...+ ..+.++.+..|++.|+.+..|.++
T Consensus 153 ~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~ 193 (345)
T PRK15108 153 NLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIV 193 (345)
T ss_pred ccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEE
Confidence 2 21123 678899999999999998766544
No 208
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=74.97 E-value=67 Score=31.14 Aligned_cols=115 Identities=19% Similarity=0.316 Sum_probs=73.1
Q ss_pred HHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhh-C-CCcE----E-EE----e----CCCCC-CHHHHHHHHHHHHh
Q 015289 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDSS----F-IL----D----ANEGY-KPQEAVEVLEKLYE 254 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~-~-~~~~----l-~v----D----aN~~w-~~~~A~~~~~~L~~ 254 (409)
+.++++++.||+.+=+... .++++.++..+.+.+. . -++. | .| | .+..| ++++|.+|+++-.-
T Consensus 91 e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~Tgv 170 (286)
T PRK08610 91 EKCKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGI 170 (286)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCC
Confidence 3455678889999999876 4677888877766652 1 1111 1 01 1 11226 59999999876431
Q ss_pred ----------CCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 255 ----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 255 ----------~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~d-Es~~~~~~~~~~i~~~a~div~~k 316 (409)
.|. |-.+| .-|++-++++++ .+++|+.+- =|=...++++++++.|.+. +|+.
T Consensus 171 D~LAvaiGt~HG~---Y~~~p--~Ld~~~L~~I~~----~~~vPLVLHGgSG~~~e~~~~ai~~GI~K-iNi~ 233 (286)
T PRK08610 171 DALAPALGSVHGP---YKGEP--KLGFKEMEEIGL----STGLPLVLHGGTGIPTKDIQKAIPFGTAK-INVN 233 (286)
T ss_pred CEEEeeccccccc---cCCCC--CCCHHHHHHHHH----HHCCCEEEeCCCCCCHHHHHHHHHCCCeE-EEec
Confidence 222 33444 457888888875 568998854 4556667899999988543 4543
No 209
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=74.49 E-value=1e+02 Score=32.22 Aligned_cols=115 Identities=20% Similarity=0.300 Sum_probs=75.3
Q ss_pred HHHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceee---cCC
Q 015289 191 AELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---QPV 266 (409)
Q Consensus 191 ~~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE---eP~ 266 (409)
.+.++.+.+.|...+-+... .....-++.++.+|+..|++.+.+ ....|.++|.... +.|.. +|- -|-
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~--g~v~t~e~a~~l~----~aGad--~i~vg~g~g 301 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA--GNVATAEAARALI----EAGAD--AVKVGIGPG 301 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE--eccCCHHHHHHHH----HcCCC--EEEECCCCC
Confidence 56667777888888876653 223345566777777777777776 4456777765544 34543 441 011
Q ss_pred C-----------CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 267 H-----------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 267 ~-----------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+ .-+++.+.++++.+ ++.++||.+|--+.+..|+.+++..|+ |.+.+
T Consensus 302 s~~~~r~~~~~g~p~~~~~~~~~~~~-~~~~~~viadGGi~~~~di~kAla~GA-~~v~~ 359 (486)
T PRK05567 302 SICTTRIVAGVGVPQITAIADAAEAA-KKYGIPVIADGGIRYSGDIAKALAAGA-SAVML 359 (486)
T ss_pred ccccceeecCCCcCHHHHHHHHHHHh-ccCCCeEEEcCCCCCHHHHHHHHHhCC-CEEEE
Confidence 0 12455666665432 246899999999999999999999985 77765
No 210
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=74.34 E-value=40 Score=32.10 Aligned_cols=109 Identities=15% Similarity=0.205 Sum_probs=75.8
Q ss_pred CcEEEEeCCC-----CC-C-HHHHHHHHHHHHhCCCCCc--eeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHH
Q 015289 229 DSSFILDANE-----GY-K-PQEAVEVLEKLYEMGVTPV--LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLD 299 (409)
Q Consensus 229 ~~~l~vDaN~-----~w-~-~~~A~~~~~~L~~~~l~~~--~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~ 299 (409)
++.+..+.+. +| + .....++++..++.|..-. --|+-....+++.++.+++ .+++||..-.-+..+.
T Consensus 49 ~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~----~v~iPvl~kdfi~~~~ 124 (260)
T PRK00278 49 KPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARA----AVSLPVLRKDFIIDPY 124 (260)
T ss_pred CCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHH----hcCCCEEeeeecCCHH
Confidence 3566666654 23 1 1233467777777653211 2355555567777777764 5789999877788888
Q ss_pred HHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEEc
Q 015289 300 DVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIG 342 (409)
Q Consensus 300 ~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~~ 342 (409)
++....+.| +|++.+..+-.......+++..|+..|+.+++-
T Consensus 125 qi~~a~~~G-AD~VlLi~~~l~~~~l~~li~~a~~lGl~~lve 166 (260)
T PRK00278 125 QIYEARAAG-ADAILLIVAALDDEQLKELLDYAHSLGLDVLVE 166 (260)
T ss_pred HHHHHHHcC-CCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEE
Confidence 888888888 599999877765556788999999999998753
No 211
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=74.30 E-value=88 Score=30.36 Aligned_cols=127 Identities=13% Similarity=0.084 Sum_probs=78.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEe--c-----C---------CChhHHHHHHHHHHhh--CCCcEE--EEeCC-CCCC
Q 015289 183 PIVSPAEAAELASKYRKQGFTTLKLK--V-----G---------KNLKEDIEVLRAIRAV--HPDSSF--ILDAN-EGYK 241 (409)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~Gf~~~KiK--v-----G---------~~~~~d~~~l~avr~~--~~~~~l--~vDaN-~~w~ 241 (409)
|..++.++..-++++.+.|.-.+-|. + | .++++-+++|++++++ .+++-| |.|+- ....
T Consensus 85 GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g 164 (290)
T TIGR02321 85 GFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLG 164 (290)
T ss_pred CCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCC
Confidence 44455577777888888888777762 1 1 1344557889988886 456544 56876 4567
Q ss_pred HHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEE
Q 015289 242 PQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 313 (409)
Q Consensus 242 ~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div 313 (409)
.++|++.++...+.|-...|+|-|.. +.+.++++.+.. ...+|+..-+.-+-.-...++-+.|.+.++
T Consensus 165 ~deAI~Ra~aY~eAGAD~ifv~~~~~--~~~ei~~~~~~~--~~p~pv~~~~~~~p~~~~~~l~~lg~~~~v 232 (290)
T TIGR02321 165 QQEAVRRGQAYEEAGADAILIHSRQK--TPDEILAFVKSW--PGKVPLVLVPTAYPQLTEADIAALSKVGIV 232 (290)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCC--CHHHHHHHHHhc--CCCCCeEEecCCCCCCCHHHHHHhcCCcEE
Confidence 89999999999999877678876532 455677776521 122577543321111122344455545654
No 212
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=74.03 E-value=49 Score=29.68 Aligned_cols=91 Identities=16% Similarity=0.296 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCCCCC-HHHHHHhHHHhhccCC-CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFG-VSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~-ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
+.+++.++++.+.+.|+. ++|=.+...+ .+.++.+++ ..+ +.|..| ++.+..++..+++.|+ |++..-
T Consensus 14 ~~~~~~~~~~~l~~~G~~--~vev~~~~~~~~~~i~~l~~----~~~~~~iGag-~v~~~~~~~~a~~~Ga-~~i~~p-- 83 (190)
T cd00452 14 DAEDALALAEALIEGGIR--AIEITLRTPGALEAIRALRK----EFPEALIGAG-TVLTPEQADAAIAAGA-QFIVSP-- 83 (190)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHH----HCCCCEEEEE-eCCCHHHHHHHHHcCC-CEEEcC--
Confidence 588899999999999986 9998877543 334455543 333 555544 5677888999999885 777421
Q ss_pred CCcHHHHHHHHHHHHHcCCcEEEccCC
Q 015289 319 KVGVLGALEIIEVVRASGLNLMIGGMV 345 (409)
Q Consensus 319 ~~Gi~~~~~i~~~A~~~gi~~~~~~~~ 345 (409)
|.. ..+.+.++.+|++++++++.
T Consensus 84 --~~~--~~~~~~~~~~~~~~i~gv~t 106 (190)
T cd00452 84 --GLD--PEVVKAANRAGIPLLPGVAT 106 (190)
T ss_pred --CCC--HHHHHHHHHcCCcEECCcCC
Confidence 222 45778888899999998873
No 213
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=74.01 E-value=40 Score=33.62 Aligned_cols=93 Identities=13% Similarity=0.171 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCceeec--CCCC-------CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCC
Q 015289 239 GYKPQEAVEVLEKLYEMGVTPVLFEQ--PVHR-------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 309 (409)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEe--P~~~-------~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a 309 (409)
.++.++=+++++.|.+.|+. .||- |.++ |+-+.++.+.+. ....++. -+.+..++++.++.+
T Consensus 64 ~~s~e~Ki~ia~~L~~~GV~--~IEvGs~vspk~vPqmad~~ev~~~i~~~--~~~~~~~----l~~n~~die~A~~~g- 134 (347)
T PLN02746 64 IVPTSVKVELIQRLVSSGLP--VVEATSFVSPKWVPQLADAKDVMAAVRNL--EGARFPV----LTPNLKGFEAAIAAG- 134 (347)
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEECCCcCcccccccccHHHHHHHHHhc--cCCceeE----EcCCHHHHHHHHHcC-
Confidence 47889889999999999986 8984 3333 333334444321 1222222 245899999999987
Q ss_pred CCEEEeCCC----------CCcHH----HHHHHHHHHHHcCCcEE
Q 015289 310 ADVINIKLA----------KVGVL----GALEIIEVVRASGLNLM 340 (409)
Q Consensus 310 ~div~~k~~----------~~Gi~----~~~~i~~~A~~~gi~~~ 340 (409)
+|.+++=++ +.... ...+++++|+++|+.+.
T Consensus 135 ~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~ 179 (347)
T PLN02746 135 AKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVR 179 (347)
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 566554311 12222 34579999999999984
No 214
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=73.95 E-value=44 Score=32.34 Aligned_cols=93 Identities=16% Similarity=0.289 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCCceeec---------CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCC
Q 015289 239 GYKPQEAVEVLEKLYEMGVTPVLFEQ---------PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 309 (409)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEe---------P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a 309 (409)
.++.++-+++++.|.+.|+. .||= |-..+..+.++.+.+ ..+..+.. .+.+..++++.++.|
T Consensus 22 ~~s~e~k~~ia~~L~~~Gv~--~IEvgsf~~p~~~p~~~d~~e~~~~l~~----~~~~~~~~--l~~~~~~ie~A~~~g- 92 (287)
T PRK05692 22 FIPTADKIALIDRLSAAGLS--YIEVASFVSPKWVPQMADAAEVMAGIQR----RPGVTYAA--LTPNLKGLEAALAAG- 92 (287)
T ss_pred CcCHHHHHHHHHHHHHcCCC--EEEeCCCcCcccccccccHHHHHHhhhc----cCCCeEEE--EecCHHHHHHHHHcC-
Confidence 47899999999999999985 8884 333344555555542 23444442 346889999999876
Q ss_pred CCEEEeCCC--------CCc--HH----HHHHHHHHHHHcCCcEE
Q 015289 310 ADVINIKLA--------KVG--VL----GALEIIEVVRASGLNLM 340 (409)
Q Consensus 310 ~div~~k~~--------~~G--i~----~~~~i~~~A~~~gi~~~ 340 (409)
+|.+.+=.+ +.| .. ...+++++|+++|+.+.
T Consensus 93 ~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~ 137 (287)
T PRK05692 93 ADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVR 137 (287)
T ss_pred CCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 576654321 222 22 35678999999999874
No 215
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=73.94 E-value=54 Score=33.22 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCC--------------CCCHHHHHHhHH
Q 015289 214 KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH--------------RDDWEGLGHVSH 279 (409)
Q Consensus 214 ~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~--------------~~d~~~~~~l~~ 279 (409)
+.-++.++.+++..++..+.+---+..+.++-.++++.+++.+.. +||==++ ..+.+.++++.+
T Consensus 98 ~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD--~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~ 175 (385)
T PLN02495 98 ETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVD--ALEINFSCPHGMPERKMGAAVGQDCDLLEEVCG 175 (385)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCC--EEEEECCCCCCCCcCccchhhccCHHHHHHHHH
Confidence 333444444544556777777776667778777888888877653 7774321 134555666655
Q ss_pred HhhccCCCeEEeCC--CCCCHHHHHHHHHcCCCCEE
Q 015289 280 IAKDKFGVSVAADE--SCRSLDDVKKIVKGNLADVI 313 (409)
Q Consensus 280 ~~~~~~~ipIa~dE--s~~~~~~~~~~i~~~a~div 313 (409)
..++.+.+||..== .+.+..++.+....+.+|.+
T Consensus 176 ~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi 211 (385)
T PLN02495 176 WINAKATVPVWAKMTPNITDITQPARVALKSGCEGV 211 (385)
T ss_pred HHHHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEE
Confidence 55555567776433 23445555554433334544
No 216
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=73.73 E-value=6.3 Score=39.86 Aligned_cols=69 Identities=25% Similarity=0.367 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhCCCCCceeecCCCC----CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 015289 244 EAVEVLEKLYEMGVTPVLFEQPVHR----DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319 (409)
Q Consensus 244 ~A~~~~~~L~~~~l~~~~iEeP~~~----~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~ 319 (409)
+-..+.+..++ +....|+|-|..| -|++.++++++ +.++.|+.|+++-++ -+.+.+..| +|++.--.+|
T Consensus 151 ~~~~~~~~i~~-~t~~V~~ESPsNPll~v~DI~~l~~la~----~~g~~vvVDnTf~~p-~~~~pL~lG-ADIV~hSaTK 223 (409)
T KOG0053|consen 151 DLKKILKAIKE-NTKAVFLESPSNPLLKVPDIEKLARLAH----KYGFLVVVDNTFGSP-YNQDPLPLG-ADIVVHSATK 223 (409)
T ss_pred hHHHHHHhhcc-CceEEEEECCCCCccccccHHHHHHHHh----hCCCEEEEeCCcCcc-cccChhhcC-CCEEEEeeee
Confidence 33345555555 3345799999886 47888888876 679999999999998 455667777 6998766665
No 217
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=73.44 E-value=1e+02 Score=30.73 Aligned_cols=100 Identities=20% Similarity=0.253 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhCCCcEEEEeCC----CCCCHHHHHHHHHHHHhCCCCC--cee-e--cCCCCCCHHHHHHhHHHhhccCC
Q 015289 216 DIEVLRAIRAVHPDSSFILDAN----EGYKPQEAVEVLEKLYEMGVTP--VLF-E--QPVHRDDWEGLGHVSHIAKDKFG 286 (409)
Q Consensus 216 d~~~l~avr~~~~~~~l~vDaN----~~w~~~~A~~~~~~L~~~~l~~--~~i-E--eP~~~~d~~~~~~l~~~~~~~~~ 286 (409)
-.+.++.+|+..|+..+.+--| ..|+.+++.+.++.++...+.+ ... | +|-...|++.+.+.-+.+++..+
T Consensus 107 ~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~ 186 (352)
T PRK05437 107 LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALP 186 (352)
T ss_pred hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhC
Confidence 3456777888777766554332 3788898888877775432210 010 2 44444466533332223445678
Q ss_pred CeEEeCCC--CCCHHHHHHHHHcCCCCEEEeC
Q 015289 287 VSVAADES--CRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 287 ipIa~dEs--~~~~~~~~~~i~~~a~div~~k 316 (409)
+||..=|+ ..+.++++.+.+.| +|++.+.
T Consensus 187 vPVivK~~g~g~s~~~a~~l~~~G-vd~I~Vs 217 (352)
T PRK05437 187 VPVIVKEVGFGISKETAKRLADAG-VKAIDVA 217 (352)
T ss_pred CCEEEEeCCCCCcHHHHHHHHHcC-CCEEEEC
Confidence 99997554 34577777777776 7988773
No 218
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=73.41 E-value=34 Score=34.17 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=45.3
Q ss_pred ccCCCeEEeCC-CCCCH--HHHHHHHHcC----------CCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 283 DKFGVSVAADE-SCRSL--DDVKKIVKGN----------LADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 283 ~~~~ipIa~dE-s~~~~--~~~~~~i~~~----------a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++..+||++-- .+.+. +.+.++++.+ .++-|++|-+..= +..++++.++|+++|+.+-
T Consensus 96 e~a~VPValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeENI~~TrevVe~Ah~~GvsVE 170 (357)
T TIGR01520 96 EHYGVPVVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEENIEICVKYLKRMAKIKMWLE 170 (357)
T ss_pred HHCCCCEEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 46689999764 34565 4578888876 3899999999864 5668999999999999874
No 219
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=73.36 E-value=38 Score=31.92 Aligned_cols=109 Identities=22% Similarity=0.362 Sum_probs=71.9
Q ss_pred HHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCC------CCCHH---HHHHHHHHHHhCCCCCcee
Q 015289 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANE------GYKPQ---EAVEVLEKLYEMGVTPVLF 262 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~------~w~~~---~A~~~~~~L~~~~l~~~~i 262 (409)
+.++++.+.|... +=+|.-.-+|.+.++.+.+-+.++.+.+|+.. +|... ...++++.++++++. ..|
T Consensus 86 e~~~~~l~~Ga~r--vvigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~-~ii 162 (241)
T PRK14114 86 DYAEKLRKLGYRR--QIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLE-EIV 162 (241)
T ss_pred HHHHHHHHCCCCE--EEECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCC-EEE
Confidence 3456667778764 45563333566677777443556888999843 45321 346788888888753 233
Q ss_pred ecCCC------CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHc
Q 015289 263 EQPVH------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307 (409)
Q Consensus 263 EeP~~------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 307 (409)
=--+. --|++.++++++ ..++||.+.=-+.+..|+.++.+.
T Consensus 163 ~tdI~rdGt~~G~d~el~~~l~~----~~~~pviasGGv~s~~Dl~~l~~~ 209 (241)
T PRK14114 163 HTEIEKDGTLQEHDFSLTRKIAI----EAEVKVFAAGGISSENSLKTAQRV 209 (241)
T ss_pred EEeechhhcCCCcCHHHHHHHHH----HCCCCEEEECCCCCHHHHHHHHhc
Confidence 22222 346777888764 578999998899999999998875
No 220
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=73.25 E-value=91 Score=32.81 Aligned_cols=112 Identities=15% Similarity=0.200 Sum_probs=63.3
Q ss_pred HHHHHHHHHcCCCeEEEecCCC-hhHHHHHHHHHHhhCCCcEEEE-eCCCCCCHHHHHHHHHHHHhCCCCCcee------
Q 015289 191 AELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVEVLEKLYEMGVTPVLF------ 262 (409)
Q Consensus 191 ~~~~~~~~~~Gf~~~KiKvG~~-~~~d~~~l~avr~~~~~~~l~v-DaN~~w~~~~A~~~~~~L~~~~l~~~~i------ 262 (409)
.+.++.+++.|...+=+..... -..-++.++.+|+.+|+..|++ |. -|.++|.... +.|.....+
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v---~t~e~a~~a~----~aGaD~i~vg~g~G~ 322 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNV---VTMYQAQNLI----QAGVDGLRVGMGSGS 322 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecC---CCHHHHHHHH----HcCcCEEEECCCCCc
Confidence 4555566666666666655421 1233455666666666655543 33 2444443332 344431111
Q ss_pred ---e-c------CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 263 ---E-Q------PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 263 ---E-e------P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
- + |. ...+..++++.+ ..++||.+|--+.+..|+.+++..|+ |.+++
T Consensus 323 ~~~t~~~~~~g~~~-~~~i~~~~~~~~----~~~vpVIadGGI~~~~di~kAla~GA-~~V~v 379 (505)
T PLN02274 323 ICTTQEVCAVGRGQ-ATAVYKVASIAA----QHGVPVIADGGISNSGHIVKALTLGA-STVMM 379 (505)
T ss_pred cccCccccccCCCc-ccHHHHHHHHHH----hcCCeEEEeCCCCCHHHHHHHHHcCC-CEEEE
Confidence 1 0 11 113333455442 56899999999999999999999985 77765
No 221
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=72.91 E-value=88 Score=29.75 Aligned_cols=126 Identities=15% Similarity=0.173 Sum_probs=82.0
Q ss_pred eeecCCCHHHHHHHHHHHHHc-------CCCeEEEecCCCh----hHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHH
Q 015289 180 ITIPIVSPAEAAELASKYRKQ-------GFTTLKLKVGKNL----KEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVE 247 (409)
Q Consensus 180 ~~i~~~~~~~~~~~~~~~~~~-------Gf~~~KiKvG~~~----~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~ 247 (409)
.+.+..+.+|.+..++-.++. |-+-+|+.|-.|. ...++.+++.+.. -.++.++- |.-++ .-
T Consensus 76 NTaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlP-----Y~~~D-~v 149 (267)
T CHL00162 76 NTAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLP-----YINAD-PM 149 (267)
T ss_pred cCcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEee-----cCCCC-HH
Confidence 456777888876555443333 4678999986432 2457778887775 45666652 33233 35
Q ss_pred HHHHHHhCCCCC-ceeecCCCC----CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 248 VLEKLYEMGVTP-VLFEQPVHR----DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 248 ~~~~L~~~~l~~-~~iEeP~~~----~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
.+++|++.|... .=+=-|+-. .+...++.+. ++.++||..|=-+.++.|....++.| +|.+-+.
T Consensus 150 ~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~----e~~~vpVivdAGIgt~sDa~~AmElG-aDgVL~n 218 (267)
T CHL00162 150 LAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIII----ENAKIPVIIDAGIGTPSEASQAMELG-ASGVLLN 218 (267)
T ss_pred HHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHH----HcCCCcEEEeCCcCCHHHHHHHHHcC-CCEEeec
Confidence 778899887431 112334432 3555566654 36789999999999999999999998 4777553
No 222
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=72.80 E-value=1.2e+02 Score=31.05 Aligned_cols=127 Identities=17% Similarity=0.279 Sum_probs=82.1
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCCC-hhHHHHHHHHHHhhCCCcEEEE-eCCCCCCHHHHHHHHHHHH
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVEVLEKLY 253 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~-~~~d~~~l~avr~~~~~~~l~v-DaN~~w~~~~A~~~~~~L~ 253 (409)
+.+.+.++. +++ ..+.++.+++.|...+=+..... ...-.+.++.+|+.+|+..+++ |. -|.++|....+
T Consensus 142 l~v~aavg~-~~~-~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V---~T~e~a~~l~~--- 213 (404)
T PRK06843 142 LRVGAAVSI-DID-TIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNI---VTKEAALDLIS--- 213 (404)
T ss_pred eEEEEEEeC-CHH-HHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEec---CCHHHHHHHHH---
Confidence 444445443 233 45677788889999988877632 3455677889999889887764 43 35666544433
Q ss_pred hCCCCCceee---cC-----------CCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 254 EMGVTPVLFE---QP-----------VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 254 ~~~l~~~~iE---eP-----------~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
.|.. +|= .| +..-++..+.++++.+ +..++||.+|-.+.+..|+.+++..|+ |.+++
T Consensus 214 -aGaD--~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~-~~~~vpVIAdGGI~~~~Di~KALalGA-~aVmv 284 (404)
T PRK06843 214 -VGAD--CLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVC-KNTNICIIADGGIRFSGDVVKAIAAGA-DSVMI 284 (404)
T ss_pred -cCCC--EEEECCCCCcCCcceeecCCCCChHHHHHHHHHHH-hhcCCeEEEeCCCCCHHHHHHHHHcCC-CEEEE
Confidence 4443 321 11 1112455554544432 356899999999999999999999985 77765
No 223
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=72.72 E-value=79 Score=29.14 Aligned_cols=141 Identities=14% Similarity=0.169 Sum_probs=95.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee
Q 015289 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 262 (409)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i 262 (409)
-..++++..+.++.+.+.|++.+.+-+-. ..-.+.++.+|+.+|+ +.+=+..-.+.+++.+ ..+.|-+ |+
T Consensus 22 r~~~~~~a~~i~~al~~~Gi~~iEitl~~--~~~~~~I~~l~~~~p~--~~IGAGTVl~~~~a~~----a~~aGA~--Fi 91 (212)
T PRK05718 22 VINKLEDAVPLAKALVAGGLPVLEVTLRT--PAALEAIRLIAKEVPE--ALIGAGTVLNPEQLAQ----AIEAGAQ--FI 91 (212)
T ss_pred EcCCHHHHHHHHHHHHHcCCCEEEEecCC--ccHHHHHHHHHHHCCC--CEEEEeeccCHHHHHH----HHHcCCC--EE
Confidence 34578899999999999999999988643 3566778888888887 4455556667766543 4446754 88
Q ss_pred ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-Cc-HHHHHHHHHHHHHcCCcEE
Q 015289 263 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VG-VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 263 EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~-~G-i~~~~~i~~~A~~~gi~~~ 340 (409)
=-|.-.. + .-+.++ +.++|..- .+.++.++.++.+.| +|++.+-|.. .| ..-...+...- -+++++
T Consensus 92 vsP~~~~--~-vi~~a~----~~~i~~iP--G~~TptEi~~a~~~G-a~~vKlFPa~~~gg~~~lk~l~~p~--p~~~~~ 159 (212)
T PRK05718 92 VSPGLTP--P-LLKAAQ----EGPIPLIP--GVSTPSELMLGMELG-LRTFKFFPAEASGGVKMLKALAGPF--PDVRFC 159 (212)
T ss_pred ECCCCCH--H-HHHHHH----HcCCCEeC--CCCCHHHHHHHHHCC-CCEEEEccchhccCHHHHHHHhccC--CCCeEE
Confidence 8887543 2 223332 46888885 377888899999988 5998887765 34 33333333222 368888
Q ss_pred EccCC
Q 015289 341 IGGMV 345 (409)
Q Consensus 341 ~~~~~ 345 (409)
+.+-+
T Consensus 160 ptGGV 164 (212)
T PRK05718 160 PTGGI 164 (212)
T ss_pred EeCCC
Confidence 86644
No 224
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=72.68 E-value=29 Score=34.15 Aligned_cols=54 Identities=9% Similarity=0.129 Sum_probs=45.5
Q ss_pred CCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 286 GVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 286 ~ipIa~d-Es~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
.+||++- ....+.+.+.+.++.| ++-|.+|-+..= +..++++.++|+.+|+.+-
T Consensus 85 ~VPV~lHLDHg~~~e~i~~ai~~G-ftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVE 143 (321)
T PRK07084 85 PIPIVLHLDHGDSFELCKDCIDSG-FSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVE 143 (321)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcC-CCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 6899876 3467888999999997 699999999864 5678999999999999874
No 225
>PRK06801 hypothetical protein; Provisional
Probab=72.61 E-value=82 Score=30.51 Aligned_cols=118 Identities=15% Similarity=0.222 Sum_probs=71.0
Q ss_pred HHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhh--CCCcEE--EE------------e--CCCCCC-HHHHHHHHHH
Q 015289 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDSSF--IL------------D--ANEGYK-PQEAVEVLEK 251 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~--~~~~~l--~v------------D--aN~~w~-~~~A~~~~~~ 251 (409)
+.++++++.||+.+-+.-. .+.++.++..+.+++. .-++.+ -+ + ....+| +++|.+|.++
T Consensus 88 e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~ 167 (286)
T PRK06801 88 EAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDR 167 (286)
T ss_pred HHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHH
Confidence 3355667789999999765 3456777776666552 112221 11 1 111254 6999999865
Q ss_pred HHhCCCCCcee--------ecCCCCCCHHHHHHhHHHhhccCCCeEE-eCCCCCCHHHHHHHHHcCCCCEEEeCC
Q 015289 252 LYEMGVTPVLF--------EQPVHRDDWEGLGHVSHIAKDKFGVSVA-ADESCRSLDDVKKIVKGNLADVINIKL 317 (409)
Q Consensus 252 L~~~~l~~~~i--------EeP~~~~d~~~~~~l~~~~~~~~~ipIa-~dEs~~~~~~~~~~i~~~a~div~~k~ 317 (409)
.. +...-+ ...-+..+++.++++++ .+++|+. .|=|=.+.++++++++.| ++-+|+.-
T Consensus 168 tg---vD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~----~~~~PLVlHGGSgi~~e~~~~~i~~G-i~KINv~T 234 (286)
T PRK06801 168 TG---IDALAVAIGNAHGKYKGEPKLDFARLAAIHQ----QTGLPLVLHGGSGISDADFRRAIELG-IHKINFYT 234 (286)
T ss_pred HC---cCEEEeccCCCCCCCCCCCCCCHHHHHHHHH----hcCCCEEEECCCCCCHHHHHHHHHcC-CcEEEehh
Confidence 42 210111 11223468888888865 5678877 455666778899999988 46666643
No 226
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=72.56 E-value=1.4e+02 Score=32.17 Aligned_cols=126 Identities=13% Similarity=0.150 Sum_probs=66.3
Q ss_pred HHHHHHHHcCCCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEEEeC--CCCCCHHHHHHHHHHHHhCCCCCceeecCCCC
Q 015289 192 ELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDA--NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR 268 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~vDa--N~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~ 268 (409)
..++...+.|...|.+-... +++.-...++.+++.|..+...+.. ...++.+..+++++.+.+.|.....|=+-.-.
T Consensus 100 ~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~ 179 (592)
T PRK09282 100 KFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIKDMAGL 179 (592)
T ss_pred HHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCcCCC
Confidence 34455566677777666542 3333333345555555444333322 23456777777777777777655566666555
Q ss_pred CCHHHHHHhHHHhhccCCCeEEeCCCC---CCHHHHHHHHHcCCCCEEEeCCC
Q 015289 269 DDWEGLGHVSHIAKDKFGVSVAADESC---RSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 269 ~d~~~~~~l~~~~~~~~~ipIa~dEs~---~~~~~~~~~i~~~a~div~~k~~ 318 (409)
-......++.+.++++.++||...=+. ........++++| +|++..-++
T Consensus 180 ~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv~aG-ad~vD~ai~ 231 (592)
T PRK09282 180 LTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAVEAG-VDIIDTAIS 231 (592)
T ss_pred cCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHHHHHHhC-CCEEEeecc
Confidence 555555555555555566666552211 1222334455555 566554443
No 227
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=72.47 E-value=1.1e+02 Score=30.48 Aligned_cols=128 Identities=18% Similarity=0.284 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCc-EEEEeCCCCCCHHHHHHHHHHHHhCCCCCceee
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 263 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~-~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE 263 (409)
+++++.++++++....-...+-+-+|.. +.|.++++++.++++.. -|.+|..++++... ++.++.+++. |
T Consensus 78 ~~~e~~~~~v~~~~~~~~~~~~vsvG~~-~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~-i~~ik~ir~~-----~-- 148 (343)
T TIGR01305 78 YSVDEWKAFATNSSPDCLQNVAVSSGSS-DNDLEKMTSILEAVPQLKFICLDVANGYSEHF-VEFVKLVREA-----F-- 148 (343)
T ss_pred CCHHHHHHHHHhhcccccceEEEEeccC-HHHHHHHHHHHhcCCCCCEEEEECCCCcHHHH-HHHHHHHHhh-----C--
Confidence 4677766666554433344555666642 57899999999987554 46789999987654 4555555442 1
Q ss_pred cCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC-------CCC----Cc---HHHHHHHH
Q 015289 264 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK-------LAK----VG---VLGALEII 329 (409)
Q Consensus 264 eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k-------~~~----~G---i~~~~~i~ 329 (409)
.+.+|..| ++.++++.+.+++.| +|++.+- .++ +| ++...+++
T Consensus 149 ---------------------p~~~viaG-NV~T~e~a~~Li~aG-AD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a 205 (343)
T TIGR01305 149 ---------------------PEHTIMAG-NVVTGEMVEELILSG-ADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECA 205 (343)
T ss_pred ---------------------CCCeEEEe-cccCHHHHHHHHHcC-CCEEEEcccCCCcccCceeCCCCcCHHHHHHHHH
Confidence 12344443 568889999999987 5887543 111 22 33445677
Q ss_pred HHHHHcCCcEEEccC
Q 015289 330 EVVRASGLNLMIGGM 344 (409)
Q Consensus 330 ~~A~~~gi~~~~~~~ 344 (409)
+.|+.++++++.-+-
T Consensus 206 ~aa~~~~v~VIaDGG 220 (343)
T TIGR01305 206 DAAHGLKGHIISDGG 220 (343)
T ss_pred HHhccCCCeEEEcCC
Confidence 777788899887553
No 228
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=72.47 E-value=21 Score=32.06 Aligned_cols=101 Identities=17% Similarity=0.221 Sum_probs=67.0
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeec--CCCC-CCHHHHHHhHHHhhccCCCeEEeCCCCCCHH--HHHHH
Q 015289 230 SSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ--PVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLD--DVKKI 304 (409)
Q Consensus 230 ~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEe--P~~~-~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~--~~~~~ 304 (409)
+.+.+| ..+.+++.++++.|.+. +. |+|= |+-. .-.+.++.+++ ...++||..+-.+.+.. .++.+
T Consensus 3 ~~~a~d---~~~~~~~~~~~~~l~~~-i~--~ieig~~~~~~~g~~~i~~i~~---~~~~~~i~~~~~v~~~~~~~~~~~ 73 (202)
T cd04726 3 LQVALD---LLDLEEALELAKKVPDG-VD--IIEAGTPLIKSEGMEAVRALRE---AFPDKIIVADLKTADAGALEAEMA 73 (202)
T ss_pred eEEEEc---CCCHHHHHHHHHHhhhc-CC--EEEcCCHHHHHhCHHHHHHHHH---HCCCCEEEEEEEeccccHHHHHHH
Confidence 345554 35789999999999998 75 9998 5432 12344555543 12578999886655553 45667
Q ss_pred HHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEE
Q 015289 305 VKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMI 341 (409)
Q Consensus 305 i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~ 341 (409)
.+.| +|++.+...- +.....++++.++++|+++.+
T Consensus 74 ~~aG-ad~i~~h~~~-~~~~~~~~i~~~~~~g~~~~v 108 (202)
T cd04726 74 FKAG-ADIVTVLGAA-PLSTIKKAVKAAKKYGKEVQV 108 (202)
T ss_pred HhcC-CCEEEEEeeC-CHHHHHHHHHHHHHcCCeEEE
Confidence 7777 5888765432 222356678899999999984
No 229
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=72.35 E-value=85 Score=30.37 Aligned_cols=115 Identities=21% Similarity=0.345 Sum_probs=74.2
Q ss_pred HHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhh-C-CCcE----E----------EEeCCC-CC-CHHHHHHHHHHH
Q 015289 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDSS----F----------ILDANE-GY-KPQEAVEVLEKL 252 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~-~-~~~~----l----------~vDaN~-~w-~~~~A~~~~~~L 252 (409)
+.+.++++.||+.+=+.-. .++++.+++.+.+.+. . -++. | ..+.+. .| ++++|.+|+++.
T Consensus 88 e~i~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~T 167 (284)
T PRK12857 88 EQVMKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEET 167 (284)
T ss_pred HHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHH
Confidence 3456677789999999876 4677888877766652 1 1111 1 112221 25 599999999865
Q ss_pred Hh----------CCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 253 YE----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 253 ~~----------~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
.- .|+ |-.+| .-|++-++++++ .+++|+.+ |=|=...++++++++.|.. =+|+.
T Consensus 168 gvD~LAvaiGt~HG~---y~~~p--~Ld~~~L~~i~~----~~~vPLVlHGgSG~~~e~~~~ai~~Gi~-KiNi~ 232 (284)
T PRK12857 168 GVDALAIAIGTAHGP---YKGEP--KLDFDRLAKIKE----LVNIPIVLHGSSGVPDEAIRKAISLGVR-KVNID 232 (284)
T ss_pred CCCEEeeccCccccc---cCCCC--cCCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHHcCCe-EEEeC
Confidence 31 222 44444 458888898875 56888885 4566667789999998854 34554
No 230
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=72.17 E-value=82 Score=29.06 Aligned_cols=143 Identities=16% Similarity=0.254 Sum_probs=96.4
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCce
Q 015289 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (409)
Q Consensus 182 i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (409)
+-..++++....++.+.+-|++++.+-... ..-.+.++++++.+| +..+-|..-.+++|+.+. .+.|-+ |
T Consensus 19 lr~~~~e~a~~~a~Ali~gGi~~IEITl~s--p~a~e~I~~l~~~~p--~~lIGAGTVL~~~q~~~a----~~aGa~--f 88 (211)
T COG0800 19 IRGDDVEEALPLAKALIEGGIPAIEITLRT--PAALEAIRALAKEFP--EALIGAGTVLNPEQARQA----IAAGAQ--F 88 (211)
T ss_pred EEeCCHHHHHHHHHHHHHcCCCeEEEecCC--CCHHHHHHHHHHhCc--ccEEccccccCHHHHHHH----HHcCCC--E
Confidence 345688999999999999999999998863 244567888888877 678889999999886444 446643 7
Q ss_pred eecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CcHHHHHHHHHHHHHcCCcEE
Q 015289 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~-~Gi~~~~~i~~~A~~~gi~~~ 340 (409)
+=-|--..+ +.+.+ .+.++|++-| +.++.++...++.| ++++-+=|.. +|....++...-- --+++++
T Consensus 89 iVsP~~~~e---v~~~a----~~~~ip~~PG--~~TptEi~~Ale~G-~~~lK~FPa~~~Gg~~~~ka~~gP-~~~v~~~ 157 (211)
T COG0800 89 IVSPGLNPE---VAKAA----NRYGIPYIPG--VATPTEIMAALELG-ASALKFFPAEVVGGPAMLKALAGP-FPQVRFC 157 (211)
T ss_pred EECCCCCHH---HHHHH----HhCCCcccCC--CCCHHHHHHHHHcC-hhheeecCccccCcHHHHHHHcCC-CCCCeEe
Confidence 777754322 23333 2578999874 78899999999988 4776555554 3533333322110 1236777
Q ss_pred EccCC
Q 015289 341 IGGMV 345 (409)
Q Consensus 341 ~~~~~ 345 (409)
+.+-+
T Consensus 158 pTGGV 162 (211)
T COG0800 158 PTGGV 162 (211)
T ss_pred ecCCC
Confidence 75543
No 231
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=71.80 E-value=73 Score=30.88 Aligned_cols=116 Identities=22% Similarity=0.317 Sum_probs=73.9
Q ss_pred HHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhh-C-CCcEE------E--------EeC-CCCC-CHHHHHHHHHHH
Q 015289 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDSSF------I--------LDA-NEGY-KPQEAVEVLEKL 252 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~-~-~~~~l------~--------vDa-N~~w-~~~~A~~~~~~L 252 (409)
+.+.++++.||+.+=+... .++++.+++.+.+.+. . -++.+ . .+. ...| ++++|.+|+++-
T Consensus 91 e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~T 170 (288)
T TIGR00167 91 EDCAQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLT 170 (288)
T ss_pred HHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhcc
Confidence 3456667789999999876 4678888887777652 2 22211 1 111 1225 489999998764
Q ss_pred Hh----------CCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 253 YE----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 253 ~~----------~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~d-Es~~~~~~~~~~i~~~a~div~~k 316 (409)
.- .|. |-..|-. -|++-++++++ .+++|+.+- =|=...++++++++.|... +|+.
T Consensus 171 gvD~LAvaiGt~HG~---y~~~p~~-Ld~~~L~~I~~----~v~vPLVlHGgSG~~~e~~~~ai~~Gi~K-iNi~ 236 (288)
T TIGR00167 171 GVDSLAAAIGNVHGV---YKGEPKG-LDFERLEEIQK----YVNLPLVLHGGSGIPDEEIKKAISLGVVK-VNID 236 (288)
T ss_pred CCcEEeeccCccccc---cCCCCCc-cCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHHcCCeE-EEcC
Confidence 31 222 4444532 47888888875 578998854 5556667899999988543 3443
No 232
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=71.53 E-value=60 Score=30.24 Aligned_cols=114 Identities=20% Similarity=0.173 Sum_probs=69.3
Q ss_pred HHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCC--CcEEEEeCCCC--------CCHHHHHHHHHHHHhCCCCCce
Q 015289 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP--DSSFILDANEG--------YKPQEAVEVLEKLYEMGVTPVL 261 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~--~~~l~vDaN~~--------w~~~~A~~~~~~L~~~~l~~~~ 261 (409)
+.++++...|.. |+=+|...-.+ +.++.+-+.++ .+-+.+|+... .++.+.++.+... --.+...=
T Consensus 91 edv~~~l~~Ga~--~viigt~~~~~-~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~d 166 (233)
T cd04723 91 ENAQEWLKRGAS--RVIVGTETLPS-DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVLD 166 (233)
T ss_pred HHHHHHHHcCCC--eEEEcceeccc-hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEEE
Confidence 345666777754 44566433456 77777767643 57889999655 3455554444433 11110000
Q ss_pred e--ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015289 262 F--EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314 (409)
Q Consensus 262 i--EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~ 314 (409)
+ +--....|++.++++.+ .+.+||..+=-+.+..|+.++++.|+ +.+.
T Consensus 167 i~~~G~~~g~~~~~~~~i~~----~~~ipvi~~GGi~s~edi~~l~~~G~-~~vi 216 (233)
T cd04723 167 IDRVGSGQGPDLELLERLAA----RADIPVIAAGGVRSVEDLELLKKLGA-SGAL 216 (233)
T ss_pred cCccccCCCcCHHHHHHHHH----hcCCCEEEeCCCCCHHHHHHHHHcCC-CEEE
Confidence 1 11122346677777764 56899999999999999999999874 5443
No 233
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=71.18 E-value=92 Score=29.23 Aligned_cols=153 Identities=18% Similarity=0.208 Sum_probs=92.8
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhh-CCCc-EEEEeCCC-------CC------
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDS-SFILDANE-------GY------ 240 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~-~~~~-~l~vDaN~-------~w------ 240 (409)
||.....++.+.+++ ++++..|-. |+.+...-=.|-+.++.+.+. |.++ .+.+|+-. .|
T Consensus 75 iPltVGGGI~s~eD~----~~ll~aGAD--KVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~g 148 (256)
T COG0107 75 IPLTVGGGIRSVEDA----RKLLRAGAD--KVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHG 148 (256)
T ss_pred eeeEecCCcCCHHHH----HHHHHcCCC--eeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecC
Confidence 444444456676654 455566665 555543223455677777777 4554 56688732 34
Q ss_pred ----CHHHHHHHHHHHHhCCCCCceeecCCC------CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCC
Q 015289 241 ----KPQEAVEVLEKLYEMGVTPVLFEQPVH------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 310 (409)
Q Consensus 241 ----~~~~A~~~~~~L~~~~l~~~~iEeP~~------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~ 310 (409)
+--++++|+++.++.|.. +.+=--+. -.|++.++.++ ....+||.+.--+-++++|.+.+..+.+
T Consensus 149 Gr~~t~~d~~~Wa~~~e~~GAG-EIlLtsmD~DGtk~GyDl~l~~~v~----~~v~iPvIASGGaG~~ehf~eaf~~~~a 223 (256)
T COG0107 149 GREDTGLDAVEWAKEVEELGAG-EILLTSMDRDGTKAGYDLELTRAVR----EAVNIPVIASGGAGKPEHFVEAFTEGKA 223 (256)
T ss_pred CCcCCCcCHHHHHHHHHHcCCc-eEEEeeecccccccCcCHHHHHHHH----HhCCCCEEecCCCCcHHHHHHHHHhcCc
Confidence 234688999999998753 22211222 24676666665 4789999999899999999999988766
Q ss_pred CEEEe-CCCCCcHHHHHHHHHHHHHcCCcE
Q 015289 311 DVINI-KLAKVGVLGALEIIEVVRASGLNL 339 (409)
Q Consensus 311 div~~-k~~~~Gi~~~~~i~~~A~~~gi~~ 339 (409)
|.... -+-..|...-..+-++.+++|+++
T Consensus 224 dAaLAAsiFH~~~~~i~evK~yL~~~gi~V 253 (256)
T COG0107 224 DAALAASIFHFGEITIGEVKEYLAEQGIEV 253 (256)
T ss_pred cHHHhhhhhhcCcccHHHHHHHHHHcCCCc
Confidence 65421 122234222334445666777765
No 234
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=70.90 E-value=35 Score=36.99 Aligned_cols=113 Identities=10% Similarity=0.147 Sum_probs=72.0
Q ss_pred CCCcEEEEeC--CC-CCCHHHHHHHHHHHHhCCCCCceeecCCCC-CCHHHHHHhHHHhh-ccCCCeEEeCCCCCCHHHH
Q 015289 227 HPDSSFILDA--NE-GYKPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAK-DKFGVSVAADESCRSLDDV 301 (409)
Q Consensus 227 ~~~~~l~vDa--N~-~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~~-~~~~ipIa~dEs~~~~~~~ 301 (409)
|.+..|+|-. |. .-+.+..++-+.+|++.|-+ .+==-++. .+.+.++++++.++ ..+.+|+.+|=. +++.-+
T Consensus 91 GG~~PI~VQSMt~t~T~D~eatv~Qi~~l~~aGce--iVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIH-F~~~~A 167 (733)
T PLN02925 91 GSEHPIRIQTMTTTDTKDVEATVDQVMRIADKGAD--IVRITVQGKKEADACFEIKNTLVQKGYNIPLVADIH-FAPSVA 167 (733)
T ss_pred CCCCceEEEecCCCCcccHHHHHHHHHHHHHcCCC--EEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecC-CCHHHH
Confidence 4455555542 22 23456666777777777754 33322331 24555666655332 357899999876 455555
Q ss_pred HHHHHcCCCCEEEeCCCCCc-H----------------------HHHHHHHHHHHHcCCcEEEccC
Q 015289 302 KKIVKGNLADVINIKLAKVG-V----------------------LGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 302 ~~~i~~~a~div~~k~~~~G-i----------------------~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
...++. +|-+.+.|+..| - .....++..|+++|+++-+|..
T Consensus 168 l~a~~~--vdkiRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN 231 (733)
T PLN02925 168 LRVAEC--FDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTN 231 (733)
T ss_pred HHHHHh--cCCeEECCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 555654 899999999998 4 2234589999999999988654
No 235
>PLN02321 2-isopropylmalate synthase
Probab=70.84 E-value=36 Score=36.81 Aligned_cols=111 Identities=16% Similarity=0.223 Sum_probs=67.8
Q ss_pred eCCCC----CCHHHHHHHHHHHHhCCCCCceee--cC-CCCCCHHHHHHhHHHhhccC----CCeEEeCCCCCCHHHHHH
Q 015289 235 DANEG----YKPQEAVEVLEKLYEMGVTPVLFE--QP-VHRDDWEGLGHVSHIAKDKF----GVSVAADESCRSLDDVKK 303 (409)
Q Consensus 235 DaN~~----w~~~~A~~~~~~L~~~~l~~~~iE--eP-~~~~d~~~~~~l~~~~~~~~----~ipIa~dEs~~~~~~~~~ 303 (409)
|.+|+ ++.++-+++++.|.+.|+. .|| =| .++.|++.++++.+.+.... -+|....=+-.+..++..
T Consensus 96 DGeQ~~g~~~s~eeKl~Ia~~L~~lGVd--~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~ 173 (632)
T PLN02321 96 DGEQSPGATLTSKEKLDIARQLAKLGVD--IIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDA 173 (632)
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHH
Confidence 56664 7899999999999999986 999 46 44678888888764211100 013333333446778888
Q ss_pred HHHcC--C----CCEEE----------eCCCCCc-HHHHHHHHHHHHHcCC-cEEEccCCch
Q 015289 304 IVKGN--L----ADVIN----------IKLAKVG-VLGALEIIEVVRASGL-NLMIGGMVET 347 (409)
Q Consensus 304 ~i~~~--a----~div~----------~k~~~~G-i~~~~~i~~~A~~~gi-~~~~~~~~es 347 (409)
.++.. + +.++. ++.++-- +..+.+++++|+++|. .+..++...+
T Consensus 174 A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~ 235 (632)
T PLN02321 174 AWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAG 235 (632)
T ss_pred HHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCC
Confidence 87752 1 22221 1111111 2335678999999998 4777765433
No 236
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=70.40 E-value=99 Score=29.60 Aligned_cols=100 Identities=10% Similarity=0.084 Sum_probs=58.1
Q ss_pred HHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhhCCCcEEEEeC--CCCCCHHHHHHHHHHHHhCCCCCceeecCCCC
Q 015289 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDA--NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR 268 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~~~~~~l~vDa--N~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~ 268 (409)
+..+...+.|...+.+-.. .+++.-.+.++.+|+.+-.+.+.++. ...++.+...++++.+.+++.....|=+.+-.
T Consensus 95 ~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~ 174 (275)
T cd07937 95 LFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGL 174 (275)
T ss_pred HHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 3344555667777666544 23333444455555555444443432 24567777778888888777655566676665
Q ss_pred CCHHHHHHhHHHhhccCCCeEEe
Q 015289 269 DDWEGLGHVSHIAKDKFGVSVAA 291 (409)
Q Consensus 269 ~d~~~~~~l~~~~~~~~~ipIa~ 291 (409)
-..+...++-+.+++..++||..
T Consensus 175 ~~P~~v~~lv~~l~~~~~~~l~~ 197 (275)
T cd07937 175 LTPYAAYELVKALKKEVGLPIHL 197 (275)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEE
Confidence 55656665555455555566654
No 237
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=70.28 E-value=6 Score=36.90 Aligned_cols=115 Identities=23% Similarity=0.360 Sum_probs=74.1
Q ss_pred HHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhh-CC-CcEEEEeCCCC-------CCH---HHHHHHHHHHHhCCCCC
Q 015289 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HP-DSSFILDANEG-------YKP---QEAVEVLEKLYEMGVTP 259 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~-~~-~~~l~vDaN~~-------w~~---~~A~~~~~~L~~~~l~~ 259 (409)
+.++++.+.|.. |+=+|...-+|.+.++.+.+. ++ .+.+.+|+..+ |.. -...++++++.++++.
T Consensus 86 ed~~~ll~~Ga~--~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~- 162 (229)
T PF00977_consen 86 EDAERLLDAGAD--RVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAG- 162 (229)
T ss_dssp HHHHHHHHTT-S--EEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-S-
T ss_pred HHHHHHHHhCCC--EEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCc-
Confidence 345667778876 566664334566777777776 55 57888998765 432 2456788888888764
Q ss_pred ceeecCCC------CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015289 260 VLFEQPVH------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314 (409)
Q Consensus 260 ~~iEeP~~------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~ 314 (409)
.+|=.-+. --|++.++++++ ..++||.+.=-+.+..|+.++.+.|. +.+.
T Consensus 163 ~ii~tdi~~dGt~~G~d~~~~~~l~~----~~~~~viasGGv~~~~Dl~~l~~~G~-~gvi 218 (229)
T PF00977_consen 163 EIILTDIDRDGTMQGPDLELLKQLAE----AVNIPVIASGGVRSLEDLRELKKAGI-DGVI 218 (229)
T ss_dssp EEEEEETTTTTTSSS--HHHHHHHHH----HHSSEEEEESS--SHHHHHHHHHTTE-CEEE
T ss_pred EEEEeeccccCCcCCCCHHHHHHHHH----HcCCCEEEecCCCCHHHHHHHHHCCC-cEEE
Confidence 34433333 236777777764 46899999889999999999998875 5543
No 238
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=70.15 E-value=70 Score=31.71 Aligned_cols=58 Identities=17% Similarity=0.262 Sum_probs=47.7
Q ss_pred ccCCCeEEeCC-CCC--CHHHHHHHHHcCC----------CCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 283 DKFGVSVAADE-SCR--SLDDVKKIVKGNL----------ADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 283 ~~~~ipIa~dE-s~~--~~~~~~~~i~~~a----------~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++.++||++-= .+. +++.+.++++.|. ++-+++|.+..- +..++++.++|+..|+.+-
T Consensus 82 ~~~~VPV~lHLDH~~~~~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~~vve~Ah~~gi~VE 156 (340)
T cd00453 82 EHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLE 156 (340)
T ss_pred HHCCCCEEEEcCCCCCCCHHHHHHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 46789999764 455 7889999999984 799999999864 5568899999999999874
No 239
>PLN02389 biotin synthase
Probab=69.97 E-value=75 Score=32.10 Aligned_cols=38 Identities=29% Similarity=0.317 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHcCCcEEEccCC---chHHHHHHHHHHHc
Q 015289 322 VLGALEIIEVVRASGLNLMIGGMV---ETRLAMGFAGHLSA 359 (409)
Q Consensus 322 i~~~~~i~~~A~~~gi~~~~~~~~---es~i~~~~~~hlaa 359 (409)
..+.++.++.|++.|+++..|.++ |+.--....++...
T Consensus 212 ~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr 252 (379)
T PLN02389 212 YDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVGLLHTLA 252 (379)
T ss_pred HHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHHHHHHHHH
Confidence 567899999999999998765443 55433333444443
No 240
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=69.87 E-value=27 Score=36.59 Aligned_cols=115 Identities=14% Similarity=0.161 Sum_probs=70.3
Q ss_pred eCCC----CCCHHHHHHHHHHHHhCCCCCceee--cCCC-CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHc
Q 015289 235 DANE----GYKPQEAVEVLEKLYEMGVTPVLFE--QPVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307 (409)
Q Consensus 235 DaN~----~w~~~~A~~~~~~L~~~~l~~~~iE--eP~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 307 (409)
|.+| .|+.++-+++++.|.+.|+. +|| =|.. +.|++..+++.+. ..+..|+. =.-....++.+.++.
T Consensus 11 DG~Q~~g~~~s~e~K~~ia~~L~~~GV~--~IEvG~p~~s~~d~e~v~~i~~~---~~~~~i~a-l~r~~~~did~a~~a 84 (494)
T TIGR00973 11 DGEQSPGASLTVEEKLQIALALERLGVD--IIEAGFPVSSPGDFEAVQRIART---VKNPRVCG-LARCVEKDIDAAAEA 84 (494)
T ss_pred ccCcCCCCCcCHHHHHHHHHHHHHcCCC--EEEEECCCCCHHHHHHHHHHHHh---CCCCEEEE-EcCCCHHhHHHHHHh
Confidence 6666 47899999999999999986 999 4544 3466666666532 12233332 122356777777765
Q ss_pred C---CCCEEEeCC-----------CCC--c-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHH
Q 015289 308 N---LADVINIKL-----------AKV--G-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAG 355 (409)
Q Consensus 308 ~---a~div~~k~-----------~~~--G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~ 355 (409)
. ..+.+.+=. .+. . +..+.+++++|+++|..+.+++...+........
T Consensus 85 l~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~ 149 (494)
T TIGR00973 85 LKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLA 149 (494)
T ss_pred ccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHH
Confidence 2 234443211 111 1 3345678999999999999988754433333333
No 241
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=69.74 E-value=37 Score=32.31 Aligned_cols=101 Identities=24% Similarity=0.322 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHH-cCCCeEEEecCCChhHHHHHHHHHHhhC-C---CcEE--EEeCC-CCC-----C---HHHHHHHH
Q 015289 186 SPAEAAELASKYRK-QGFTTLKLKVGKNLKEDIEVLRAIRAVH-P---DSSF--ILDAN-EGY-----K---PQEAVEVL 249 (409)
Q Consensus 186 ~~~~~~~~~~~~~~-~Gf~~~KiKvG~~~~~d~~~l~avr~~~-~---~~~l--~vDaN-~~w-----~---~~~A~~~~ 249 (409)
++++..+.+.+..+ .|-..+||.=| .+-.++++++++++ | .+.| .-|.+ ++| + .+++++.+
T Consensus 88 ~~~~av~~a~r~~~~aGa~aVkiEd~---~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra 164 (254)
T cd06557 88 SPEQALRNAARLMKEAGADAVKLEGG---AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDA 164 (254)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEcCc---HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHH
Confidence 58888777666666 89999999865 46678888888864 3 1111 11211 222 2 46788888
Q ss_pred HHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEE---eCCCCCC
Q 015289 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA---ADESCRS 297 (409)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa---~dEs~~~ 297 (409)
+.+++.|....++|-+ + . +..+++++ ++.+|+. +|-.|.+
T Consensus 165 ~a~~~AGA~~i~lE~v-~-~--~~~~~i~~----~v~iP~igiGaG~~~dg 207 (254)
T cd06557 165 LALEEAGAFALVLECV-P-A--ELAKEITE----ALSIPTIGIGAGPDCDG 207 (254)
T ss_pred HHHHHCCCCEEEEcCC-C-H--HHHHHHHH----hCCCCEEEeccCCCCCc
Confidence 8899998765677776 3 2 34677765 5678876 4554443
No 242
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=69.72 E-value=83 Score=28.15 Aligned_cols=138 Identities=16% Similarity=0.253 Sum_probs=85.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceee
Q 015289 184 IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 263 (409)
Q Consensus 184 ~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE 263 (409)
..++++..+.++.+.+.|++.+-+.... ....+.++.+++.+|++. +-+..-.+.+++ +.+.+.+.. ++=
T Consensus 12 ~~~~~~~~~~~~~l~~~G~~~vev~~~~--~~~~~~i~~l~~~~~~~~--iGag~v~~~~~~----~~a~~~Ga~--~i~ 81 (190)
T cd00452 12 GDDAEDALALAEALIEGGIRAIEITLRT--PGALEAIRALRKEFPEAL--IGAGTVLTPEQA----DAAIAAGAQ--FIV 81 (190)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCC--hhHHHHHHHHHHHCCCCE--EEEEeCCCHHHH----HHHHHcCCC--EEE
Confidence 4578888899999999999999998753 346668888888777643 444444555554 223334432 553
Q ss_pred cCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHc-CCcEEEc
Q 015289 264 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRAS-GLNLMIG 342 (409)
Q Consensus 264 eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~-gi~~~~~ 342 (409)
=|- .+.+ +.+.++ ..++++..|=+ ++.++.++.+.| +|++.+.+...-..+.++ .+.+.. +++++.-
T Consensus 82 ~p~--~~~~-~~~~~~----~~~~~~i~gv~--t~~e~~~A~~~G-ad~i~~~p~~~~g~~~~~--~l~~~~~~~p~~a~ 149 (190)
T cd00452 82 SPG--LDPE-VVKAAN----RAGIPLLPGVA--TPTEIMQALELG-ADIVKLFPAEAVGPAYIK--ALKGPFPQVRFMPT 149 (190)
T ss_pred cCC--CCHH-HHHHHH----HcCCcEECCcC--CHHHHHHHHHCC-CCEEEEcCCcccCHHHHH--HHHhhCCCCeEEEe
Confidence 333 3332 333332 45788877444 999999998877 699999875432222222 223333 4777764
Q ss_pred c
Q 015289 343 G 343 (409)
Q Consensus 343 ~ 343 (409)
+
T Consensus 150 G 150 (190)
T cd00452 150 G 150 (190)
T ss_pred C
Confidence 3
No 243
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=69.65 E-value=53 Score=30.19 Aligned_cols=119 Identities=17% Similarity=0.225 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHHHHHc-CCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCc--
Q 015289 184 IVSPAEAAELASKYRKQ-GFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV-- 260 (409)
Q Consensus 184 ~~~~~~~~~~~~~~~~~-Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~-- 260 (409)
..+.+++.++++.+.+. |-..+|+-+-. .-++.++.+++.+ +.+=+-.-||.+||...++.-.+| +.|+
T Consensus 60 ~~~~e~~i~~a~~l~~~~~~~~iKIP~T~---~gl~ai~~L~~~g----i~v~~T~V~s~~Qa~~Aa~AGA~y-vsP~vg 131 (211)
T cd00956 60 STDAEGMVAEARKLASLGGNVVVKIPVTE---DGLKAIKKLSEEG----IKTNVTAIFSAAQALLAAKAGATY-VSPFVG 131 (211)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEEcCcH---hHHHHHHHHHHcC----CceeeEEecCHHHHHHHHHcCCCE-EEEecC
Confidence 46889999999888776 55556655432 3334444444432 444455578999998777765444 2211
Q ss_pred eeecCCCCCCHHHHHHhHHHhhccCCCe---EEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 261 LFEQPVHRDDWEGLGHVSHIAKDKFGVS---VAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 261 ~iEeP~~~~d~~~~~~l~~~~~~~~~ip---Ia~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
.+++-- .|-++-.+++.+..+ +.+++ +++ |+.++.++.++.+.| +|++-+
T Consensus 132 R~~~~g-~dg~~~i~~i~~~~~-~~~~~tkil~A--s~r~~~ei~~a~~~G-ad~vTv 184 (211)
T cd00956 132 RIDDLG-GDGMELIREIRTIFD-NYGFDTKILAA--SIRNPQHVIEAALAG-ADAITL 184 (211)
T ss_pred hHhhcC-CCHHHHHHHHHHHHH-HcCCCceEEec--ccCCHHHHHHHHHcC-CCEEEe
Confidence 122211 112232334433322 44666 666 789999998888877 588744
No 244
>PRK08508 biotin synthase; Provisional
Probab=69.42 E-value=72 Score=30.59 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHcCCcEEEc
Q 015289 322 VLGALEIIEVVRASGLNLMIG 342 (409)
Q Consensus 322 i~~~~~i~~~A~~~gi~~~~~ 342 (409)
..+.++.++.|++.|+++..+
T Consensus 136 ~~~~l~~i~~a~~~Gi~v~sg 156 (279)
T PRK08508 136 WEERFQTCENAKEAGLGLCSG 156 (279)
T ss_pred HHHHHHHHHHHHHcCCeecce
Confidence 566778888899999988543
No 245
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=69.33 E-value=50 Score=30.51 Aligned_cols=72 Identities=14% Similarity=0.221 Sum_probs=36.0
Q ss_pred HHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCC-CeEEe
Q 015289 220 LRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG-VSVAA 291 (409)
Q Consensus 220 l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~-ipIa~ 291 (409)
++.+|+.+.++.+...-...+++++..++++.+.+++.....|-+-.-.-......++-+.+++..+ +||..
T Consensus 114 v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~ 186 (237)
T PF00682_consen 114 VKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGF 186 (237)
T ss_dssp HHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEE
T ss_pred HHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEE
Confidence 3444444555555555555566666666666666665544455555544444444444443444444 55543
No 246
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=69.30 E-value=92 Score=30.14 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=79.9
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCeEEEe-------cC-------CChhHHHHHHHHHHhhC--CCcEE--EEeCCCCCCHH
Q 015289 182 IPIVSPAEAAELASKYRKQGFTTLKLK-------VG-------KNLKEDIEVLRAIRAVH--PDSSF--ILDANEGYKPQ 243 (409)
Q Consensus 182 i~~~~~~~~~~~~~~~~~~Gf~~~KiK-------vG-------~~~~~d~~~l~avr~~~--~~~~l--~vDaN~~w~~~ 243 (409)
.|..++.+..+-++++.+.|--.+-|. .| .++++-++++++++++- +++.| +.|+-..=..+
T Consensus 87 tGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld 166 (289)
T COG2513 87 TGFGEALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLD 166 (289)
T ss_pred CCCCcHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHH
Confidence 355568888888888888898877763 23 25678889999999974 45444 35554333489
Q ss_pred HHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCH---HHHHHHHHcCCCCEE
Q 015289 244 EAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSL---DDVKKIVKGNLADVI 313 (409)
Q Consensus 244 ~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~---~~~~~~i~~~a~div 313 (409)
+|++.++...+.|-...|.|-.- +.+.++++++ ...+|+-..-+.... .+..++-+.| ++.|
T Consensus 167 ~AI~Ra~AY~eAGAD~if~~al~---~~e~i~~f~~----av~~pl~~N~t~~g~tp~~~~~~L~~~G-v~~V 231 (289)
T COG2513 167 DAIERAQAYVEAGADAIFPEALT---DLEEIRAFAE----AVPVPLPANITEFGKTPLLTVAELAELG-VKRV 231 (289)
T ss_pred HHHHHHHHHHHcCCcEEccccCC---CHHHHHHHHH----hcCCCeeeEeeccCCCCCcCHHHHHhcC-ceEE
Confidence 99999999999987655666544 3666777765 445444443332222 2344555555 4544
No 247
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=68.82 E-value=99 Score=29.80 Aligned_cols=113 Identities=20% Similarity=0.333 Sum_probs=71.3
Q ss_pred HHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhh-C-CCcE----E-EE----eC----CCCC-CHHHHHHHHHHHHh-
Q 015289 193 LASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDSS----F-IL----DA----NEGY-KPQEAVEVLEKLYE- 254 (409)
Q Consensus 193 ~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~-~-~~~~----l-~v----Da----N~~w-~~~~A~~~~~~L~~- 254 (409)
.+.++++.||+.+=+... .++++.++..+.+.+. . -++. | .| |. ...| ++++|.+|+++..-
T Consensus 84 ~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD 163 (276)
T cd00947 84 LIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVD 163 (276)
T ss_pred HHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCC
Confidence 345567789999999876 4667777777666552 1 1111 1 01 01 1125 49999999987641
Q ss_pred ---------CCCCCceee-cCCCCCCHHHHHHhHHHhhccCCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 255 ---------MGVTPVLFE-QPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 255 ---------~~l~~~~iE-eP~~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
.|. |-. +| .-|++-++++++ .+++|+++ |=|=...++++++++.|.. =+|+
T Consensus 164 ~LAvsiGt~HG~---Y~~~~p--~L~~~~L~~i~~----~~~vPLVlHGgSG~~~e~~~~ai~~Gi~-KiNi 225 (276)
T cd00947 164 ALAVAIGTSHGA---YKGGEP--KLDFDRLKEIAE----RVNVPLVLHGGSGIPDEQIRKAIKLGVC-KINI 225 (276)
T ss_pred EEEeccCccccc---cCCCCC--ccCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHHcCCe-EEEe
Confidence 221 333 33 347888888876 46899885 4566666789999998743 3344
No 248
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=68.67 E-value=1.1e+02 Score=29.01 Aligned_cols=173 Identities=17% Similarity=0.162 Sum_probs=92.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEec-----------CCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHh
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKV-----------GKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE 254 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKv-----------G~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~ 254 (409)
+.++..+.++.+.+.|+..+-+-- +.....+.+.++.+++..++.++.+=.+.+|... +.++...+
T Consensus 20 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~---~~i~~a~~ 96 (263)
T cd07943 20 TLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTV---DDLKMAAD 96 (263)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCH---HHHHHHHH
Confidence 567777888888888998887641 1222346778888888766666643333333322 33455556
Q ss_pred CCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEe---CCCCCCHHHHHHHH----HcCCCCEEEeCCCCCc-H--HH
Q 015289 255 MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA---DESCRSLDDVKKIV----KGNLADVINIKLAKVG-V--LG 324 (409)
Q Consensus 255 ~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~---dEs~~~~~~~~~~i----~~~a~div~~k~~~~G-i--~~ 324 (409)
.++. ++-=.++..+.+...+..+.+++ .+..+.. +-+-.++..+.+++ +.| +|.+.+.=+- | . .+
T Consensus 97 ~g~~--~iri~~~~s~~~~~~~~i~~ak~-~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G-~d~i~l~DT~-G~~~P~~ 171 (263)
T cd07943 97 LGVD--VVRVATHCTEADVSEQHIGAARK-LGMDVVGFLMMSHMASPEELAEQAKLMESYG-ADCVYVTDSA-GAMLPDD 171 (263)
T ss_pred cCCC--EEEEEechhhHHHHHHHHHHHHH-CCCeEEEEEEeccCCCHHHHHHHHHHHHHcC-CCEEEEcCCC-CCcCHHH
Confidence 6665 43323333344445544443332 3444422 22335565554433 345 5777665432 5 3 34
Q ss_pred HHHHHHHHH-HcCC-cEEEccCCchHHHHHHHHHHHccCCCCceec
Q 015289 325 ALEIIEVVR-ASGL-NLMIGGMVETRLAMGFAGHLSAGLGCFKFID 368 (409)
Q Consensus 325 ~~~i~~~A~-~~gi-~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e 368 (409)
..++....+ ..+. ++.+|+... .|++.+-.++|......++|
T Consensus 172 v~~lv~~l~~~~~~~~l~~H~Hn~--~GlA~AN~laAi~aGa~~vd 215 (263)
T cd07943 172 VRERVRALREALDPTPVGFHGHNN--LGLAVANSLAAVEAGATRID 215 (263)
T ss_pred HHHHHHHHHHhCCCceEEEEecCC--cchHHHHHHHHHHhCCCEEE
Confidence 555555544 4565 788887543 34444444544333445544
No 249
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=68.59 E-value=1.1e+02 Score=29.11 Aligned_cols=165 Identities=18% Similarity=0.235 Sum_probs=87.7
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC----------------------CChhHHHHHHHHHHhhCCCcE--
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------------KNLKEDIEVLRAIRAVHPDSS-- 231 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG----------------------~~~~~d~~~l~avr~~~~~~~-- 231 (409)
+-.|.+.+.-+.+...+.+..+.+.|-..+.+-+- ..++.-.+.++++|+..+++.
T Consensus 14 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~v 93 (258)
T PRK13111 14 LIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIV 93 (258)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 34567777777777788788888888888887653 123345667778885444444
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEe-CCCCCCHHHHHHHHHcCCC
Q 015289 232 FILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLA 310 (409)
Q Consensus 232 l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~i~~~a~ 310 (409)
+|.=.|--|.... -+|++.+.+.|+.=.-+ =-++.++.+.+.+.++ +.++.... -=.-.+.+.++.+.+. +-
T Consensus 94 lm~Y~N~i~~~G~-e~f~~~~~~aGvdGvii-pDLp~ee~~~~~~~~~----~~gl~~I~lvap~t~~eri~~i~~~-s~ 166 (258)
T PRK13111 94 LMTYYNPIFQYGV-ERFAADAAEAGVDGLII-PDLPPEEAEELRAAAK----KHGLDLIFLVAPTTTDERLKKIASH-AS 166 (258)
T ss_pred EEecccHHhhcCH-HHHHHHHHHcCCcEEEE-CCCCHHHHHHHHHHHH----HcCCcEEEEeCCCCCHHHHHHHHHh-CC
Confidence 5555676443211 25788888877632233 1244445544544432 34543222 1122233445544443 33
Q ss_pred CEEEeCCCCCcHH--------HHHHHHHHHHH-cCCcEEEccCCchH
Q 015289 311 DVINIKLAKVGVL--------GALEIIEVVRA-SGLNLMIGGMVETR 348 (409)
Q Consensus 311 div~~k~~~~Gi~--------~~~~i~~~A~~-~gi~~~~~~~~es~ 348 (409)
+++-. ++..|.| ...+.+...++ .++++++|.-+.++
T Consensus 167 gfIY~-vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~ 212 (258)
T PRK13111 167 GFVYY-VSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTP 212 (258)
T ss_pred CcEEE-EeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCH
Confidence 44322 2222322 22334444444 48999887655443
No 250
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=68.43 E-value=43 Score=35.71 Aligned_cols=113 Identities=11% Similarity=0.103 Sum_probs=71.4
Q ss_pred CCCcEEEEeC--CC-CCCHHHHHHHHHHHHhCCCCCceeecCCCC-CCHHHHHHhHHHh-hccCCCeEEeCCCCCCHHHH
Q 015289 227 HPDSSFILDA--NE-GYKPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIA-KDKFGVSVAADESCRSLDDV 301 (409)
Q Consensus 227 ~~~~~l~vDa--N~-~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~-~~~~~ipIa~dEs~~~~~~~ 301 (409)
|.+..++|-. |. .-+.+..++-+.+|.+.|-+ .+==-++. .+.+.++++.+.+ +..+.+|+.+|=.. ++.-.
T Consensus 22 Gg~~PI~vQSMt~t~T~D~~atv~Qi~~l~~aGce--iVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF-~~~~A 98 (611)
T PRK02048 22 GGPNPIRIQSMTNTSTMDTEACVAQAKRIIDAGGE--YVRLTTQGVREAENLMNINIGLRSQGYMVPLVADVHF-NPKVA 98 (611)
T ss_pred CCCCceEEEecCCCCcccHHHHHHHHHHHHHcCCC--EEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCC-CcHHH
Confidence 4445555542 22 23455666777777777754 33322331 2455566665432 13467999999764 44444
Q ss_pred HHHHHcCCCCEEEeCCCCCc-H----------------------HHHHHHHHHHHHcCCcEEEccC
Q 015289 302 KKIVKGNLADVINIKLAKVG-V----------------------LGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 302 ~~~i~~~a~div~~k~~~~G-i----------------------~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
...++. +|-+.+.|+..| - .....++..|+++|+++-+|..
T Consensus 99 ~~a~~~--v~kiRINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN 162 (611)
T PRK02048 99 DVAAQY--AEKVRINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVN 162 (611)
T ss_pred HHHHHh--hCCEEECCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecC
Confidence 455554 899999999987 3 3456689999999999988654
No 251
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=68.27 E-value=55 Score=31.21 Aligned_cols=136 Identities=18% Similarity=0.231 Sum_probs=68.3
Q ss_pred eeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC----------------------CChhHHHHHHHHHHhhCCCcE--EE
Q 015289 178 TDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------------KNLKEDIEVLRAIRAVHPDSS--FI 233 (409)
Q Consensus 178 ~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG----------------------~~~~~d~~~l~avr~~~~~~~--l~ 233 (409)
.|.+.+.-+.+...+.++.+.+.|-..+.+-+- .+++.-.+.++.+|+..++.. +|
T Consensus 14 ~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm 93 (259)
T PF00290_consen 14 PYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLM 93 (259)
T ss_dssp EEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEE
Confidence 455555556666666666666666666665542 123344555666664444433 33
Q ss_pred EeCCCCC------------------------CHHHHHHHHHHHHhCCCCCceeecCCCCCC-------------------
Q 015289 234 LDANEGY------------------------KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD------------------- 270 (409)
Q Consensus 234 vDaN~~w------------------------~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d------------------- 270 (409)
-=.|.-+ ..+++.++.+.++++++.+.++=.|..+++
T Consensus 94 ~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~ 173 (259)
T PF00290_consen 94 TYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRM 173 (259)
T ss_dssp E-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSS
T ss_pred eeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccC
Confidence 3333211 234444555666666665555555533211
Q ss_pred ---------HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 271 ---------WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 271 ---------~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
...+.+.-+.+|+.+++||+.|=-+.++++++.+. ..+|.+.+
T Consensus 174 GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~--~~aDGvIV 225 (259)
T PF00290_consen 174 GVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA--AGADGVIV 225 (259)
T ss_dssp SSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH--TTSSEEEE
T ss_pred CCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH--ccCCEEEE
Confidence 12233322233446677888887777877777766 34577654
No 252
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=67.94 E-value=63 Score=34.18 Aligned_cols=108 Identities=15% Similarity=0.242 Sum_probs=66.2
Q ss_pred EEEEeCCC----CCCHHHHHHHHHHHHhCCCCCceeec--CC-CCCCHHHHHHhHHHhhccCCCeEEe-----CCCC--C
Q 015289 231 SFILDANE----GYKPQEAVEVLEKLYEMGVTPVLFEQ--PV-HRDDWEGLGHVSHIAKDKFGVSVAA-----DESC--R 296 (409)
Q Consensus 231 ~l~vDaN~----~w~~~~A~~~~~~L~~~~l~~~~iEe--P~-~~~d~~~~~~l~~~~~~~~~ipIa~-----dEs~--~ 296 (409)
.|| |.+| .|+.++-+++++.|.+.|+. .||= |. .++|.+.++++.+. ...+..++. .+.+ .
T Consensus 12 TLR-DG~Q~~g~~~s~e~Kl~ia~~L~~~Gvd--~IEvG~p~as~~d~~~~~~i~~~--~l~~~~i~~~~~~~~~~i~~~ 86 (524)
T PRK12344 12 TLR-DGAQGEGISFSVEDKLRIARKLDELGVD--YIEGGWPGSNPKDTEFFKRAKEL--KLKHAKLAAFGSTRRAGVSAE 86 (524)
T ss_pred CCC-CcCcCCCCCCCHHHHHHHHHHHHHcCCC--EEEEcCCcCChhHHHHHHHHHHh--CCCCcEEEEEeeccccCCCcc
Confidence 344 6666 57899999999999999986 9998 54 34556666666531 111344443 1211 1
Q ss_pred CHHHHHHHHHcCCCCEEEeCCC--------CCc------HHHHHHHHHHHHHcCCcEEEccC
Q 015289 297 SLDDVKKIVKGNLADVINIKLA--------KVG------VLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 297 ~~~~~~~~i~~~a~div~~k~~--------~~G------i~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
+-.++..+.+.+ ++.+.+=.. +.+ +..+.+.+++|+++|..+.++++
T Consensus 87 ~d~~~e~~~~~g-~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e 147 (524)
T PRK12344 87 EDPNLQALLDAG-TPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAE 147 (524)
T ss_pred cHHHHHHHHhCC-CCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccc
Confidence 233555666654 466554211 111 23456788999999999988665
No 253
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=67.74 E-value=48 Score=35.11 Aligned_cols=113 Identities=13% Similarity=0.126 Sum_probs=72.5
Q ss_pred CCCcEEEEeC--CC-CCCHHHHHHHHHHHHhCCCCCceeecCCCC-CCHHHHHHhHHHhh-ccCCCeEEeCCCCCCHHHH
Q 015289 227 HPDSSFILDA--NE-GYKPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAK-DKFGVSVAADESCRSLDDV 301 (409)
Q Consensus 227 ~~~~~l~vDa--N~-~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~~-~~~~ipIa~dEs~~~~~~~ 301 (409)
|.+..++|-. |. .-+.+..++.+.+|.+.|-+ .+==-++. .+.+.++++++.++ ..+.+|+.+|=.. ++.-.
T Consensus 26 GG~~PI~VQSMt~t~T~D~~atv~Qi~~L~~aGce--iVRvtvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF-~~~~A 102 (606)
T PRK00694 26 GSEHSIKIQSMTTTATTDVDGTVRQICALQEWGCD--IVRVTVQGLKEAQACEHIKERLIQQGISIPLVADIHF-FPQAA 102 (606)
T ss_pred CCCCceEEEecCCCCcccHHHHHHHHHHHHHcCCC--EEEEcCCCHHHHHhHHHHHHHHhccCCCCCEEeecCC-ChHHH
Confidence 4455555542 21 23455566777777777754 33322321 24555666655332 2478999998764 55555
Q ss_pred HHHHHcCCCCEEEeCCCCCcH-----------------------HHHHHHHHHHHHcCCcEEEccC
Q 015289 302 KKIVKGNLADVINIKLAKVGV-----------------------LGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 302 ~~~i~~~a~div~~k~~~~Gi-----------------------~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
...++. +|-+.+.|+..|- .....++..|+++|+++-+|..
T Consensus 103 ~~a~~~--vdkiRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN 166 (606)
T PRK00694 103 MHVADF--VDKVRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVN 166 (606)
T ss_pred HHHHHh--cCceEECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecC
Confidence 555654 8999999999873 2456799999999999988654
No 254
>PRK08508 biotin synthase; Provisional
Probab=67.64 E-value=1.2e+02 Score=29.10 Aligned_cols=149 Identities=17% Similarity=0.163 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEec-CC-----ChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHH-HHhCCC
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKV-GK-----NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK-LYEMGV 257 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKv-G~-----~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~-L~~~~l 257 (409)
.+++++.+.++++.++|.+.|=+-. |. .++.=.+.++.+|+.+|++.+. -.++..+.+++.++.+. ++.+++
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~-~s~G~~~~e~l~~Lk~aGld~~~~ 118 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLI-ACNGTASVEQLKELKKAGIFSYNH 118 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEE-ecCCCCCHHHHHHHHHcCCCEEcc
Confidence 5889999999998889998887732 22 2233356667788777776543 24666666554333232 333222
Q ss_pred CCc----eeecCCCCCCHHHHHHhHHHhhccCCC------eEEeCCCCCCHHHHHHHHHcCCCCEE-----EeCCCC---
Q 015289 258 TPV----LFEQPVHRDDWEGLGHVSHIAKDKFGV------SVAADESCRSLDDVKKIVKGNLADVI-----NIKLAK--- 319 (409)
Q Consensus 258 ~~~----~iEeP~~~~d~~~~~~l~~~~~~~~~i------pIa~dEs~~~~~~~~~~i~~~a~div-----~~k~~~--- 319 (409)
.+. ++..=++..+|+..-+..+.++ +.++ -+..+|+.....+....++.-..|.+ .+.+..
T Consensus 119 ~lEt~~~~~~~i~~~~~~~~~l~~i~~a~-~~Gi~v~sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~~ 197 (279)
T PRK08508 119 NLETSKEFFPKICTTHTWEERFQTCENAK-EAGLGLCSGGIFGLGESWEDRISFLKSLASLSPHSTPINFFIPNPALPLK 197 (279)
T ss_pred cccchHHHhcCCCCCCCHHHHHHHHHHHH-HcCCeecceeEEecCCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCCC
Confidence 111 1222233344444222211111 2344 44567776666655544543334522 232211
Q ss_pred ---CcHHHHHHHHHHHHHc
Q 015289 320 ---VGVLGALEIIEVVRAS 335 (409)
Q Consensus 320 ---~Gi~~~~~i~~~A~~~ 335 (409)
....+.+++++++|-.
T Consensus 198 ~~~~~~~~~lr~iAv~Rl~ 216 (279)
T PRK08508 198 APTLSADEALEIVRLAKEA 216 (279)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 1245778888888755
No 255
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=67.53 E-value=1.1e+02 Score=31.99 Aligned_cols=114 Identities=18% Similarity=0.312 Sum_probs=68.5
Q ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCC--CCCHHHHHHhHHHhhccC-CCeEEeCCCCCCHHHHHHHH
Q 015289 229 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH--RDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIV 305 (409)
Q Consensus 229 ~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~--~~d~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i 305 (409)
+-.++++++-+-+. +..+.++.|.+.++...-++.+-. ..-++.+++++ .+. ++||..+ .+.+.++.+.++
T Consensus 214 ~g~l~V~aai~~~~-~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~----~~~p~~~vi~g-~v~t~e~a~~l~ 287 (486)
T PRK05567 214 QGRLRVGAAVGVGA-DNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIK----AKYPDVQIIAG-NVATAEAARALI 287 (486)
T ss_pred CCCEEEEeecccCc-chHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHH----hhCCCCCEEEe-ccCCHHHHHHHH
Confidence 34678887766554 336677778777776444543311 11222333343 344 7897764 578899999999
Q ss_pred HcCCCCEEEeC-----------CCCCcH---HHHHHHHHHHHHcCCcEEEccCCchHH
Q 015289 306 KGNLADVINIK-----------LAKVGV---LGALEIIEVVRASGLNLMIGGMVETRL 349 (409)
Q Consensus 306 ~~~a~div~~k-----------~~~~Gi---~~~~~i~~~A~~~gi~~~~~~~~es~i 349 (409)
+.| +|++.+= ..-+|+ +...++++.|++.+++++..+-+.++.
T Consensus 288 ~aG-ad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~ 344 (486)
T PRK05567 288 EAG-ADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSG 344 (486)
T ss_pred HcC-CCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHH
Confidence 988 5887541 112231 223456666777899999866554443
No 256
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=66.97 E-value=1.4e+02 Score=29.61 Aligned_cols=102 Identities=18% Similarity=0.247 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHH-HHhCCCCCceeec
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK-LYEMGVTPVLFEQ 264 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~-L~~~~l~~~~iEe 264 (409)
+.+..+++.+++.+.|..-+.+-+-. .++.+.+..|++.. ++.|..|.+--| .-|++..+. ++.+.++
T Consensus 34 Dv~aTv~QI~~L~~aG~dIVRvtv~~--~e~A~A~~~Ik~~~-~vPLVaDiHf~~--rla~~~~~~g~~k~RIN------ 102 (361)
T COG0821 34 DVEATVAQIKALERAGCDIVRVTVPD--MEAAEALKEIKQRL-NVPLVADIHFDY--RLALEAAECGVDKVRIN------ 102 (361)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHhC-CCCEEEEeeccH--HHHHHhhhcCcceEEEC------
Confidence 55677888888989999999999854 67888899998865 688999988664 334444444 4444333
Q ss_pred CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHH
Q 015289 265 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLD 299 (409)
Q Consensus 265 P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~ 299 (409)
|-.-.+-+..+++.+.++ +.++||-.|=+.-+++
T Consensus 103 PGNig~~~~v~~vVe~Ak-~~g~piRIGVN~GSLe 136 (361)
T COG0821 103 PGNIGFKDRVREVVEAAK-DKGIPIRIGVNAGSLE 136 (361)
T ss_pred CcccCcHHHHHHHHHHHH-HcCCCEEEecccCchh
Confidence 433333334556555444 5689999998888876
No 257
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=66.95 E-value=1e+02 Score=28.74 Aligned_cols=99 Identities=16% Similarity=0.182 Sum_probs=51.4
Q ss_pred HHHHHHHcCCCeEEEecCCC---------------hhHHHHHHHHHHhhCCCcEEEE-eCCC-CCCHHHHHHHHHHHHhC
Q 015289 193 LASKYRKQGFTTLKLKVGKN---------------LKEDIEVLRAIRAVHPDSSFIL-DANE-GYKPQEAVEVLEKLYEM 255 (409)
Q Consensus 193 ~~~~~~~~Gf~~~KiKvG~~---------------~~~d~~~l~avr~~~~~~~l~v-DaN~-~w~~~~A~~~~~~L~~~ 255 (409)
.++.+.+.|+..+.+-+... ++.-.+.++.+++.+-.+.+.+ |+.. ..++++..++++.+.++
T Consensus 79 ~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~ 158 (265)
T cd03174 79 GIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEA 158 (265)
T ss_pred hHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHc
Confidence 34455566777776655422 2223334444455554555555 4443 37888888888888888
Q ss_pred CCCCceeecCCCCCCHHHHHHhHHHhhccCC-CeEEe
Q 015289 256 GVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG-VSVAA 291 (409)
Q Consensus 256 ~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~-ipIa~ 291 (409)
+....++-+-.-.-..+.+.++-+.+++..+ +|+..
T Consensus 159 g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~ 195 (265)
T cd03174 159 GADEISLKDTVGLATPEEVAELVKALREALPDVPLGL 195 (265)
T ss_pred CCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEE
Confidence 7653333333322333334443333333333 55543
No 258
>PRK00915 2-isopropylmalate synthase; Validated
Probab=66.75 E-value=82 Score=33.20 Aligned_cols=118 Identities=15% Similarity=0.249 Sum_probs=0.0
Q ss_pred eCCCC----CCHHHHHHHHHHHHhCCCCCceeec--CC-CCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHH--
Q 015289 235 DANEG----YKPQEAVEVLEKLYEMGVTPVLFEQ--PV-HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIV-- 305 (409)
Q Consensus 235 DaN~~----w~~~~A~~~~~~L~~~~l~~~~iEe--P~-~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i-- 305 (409)
|.+|+ |+.++-+++++.|.+.|+. .||= |. ++.|++..+++.+ ...+..|+.==... ..++...+
T Consensus 14 DG~Q~~g~~~s~e~K~~ia~~L~~~Gv~--~IE~G~p~~s~~d~~~v~~i~~---~~~~~~i~a~~r~~-~~did~a~~a 87 (513)
T PRK00915 14 DGEQSPGASLTVEEKLQIAKQLERLGVD--VIEAGFPASSPGDFEAVKRIAR---TVKNSTVCGLARAV-KKDIDAAAEA 87 (513)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCC--EEEEcCCCCChHHHHHHHHHHh---hCCCCEEEEEccCC-HHHHHHHHHH
Q ss_pred --HcCCCCEEEeCCC---------CCc----HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHH
Q 015289 306 --KGNLADVINIKLA---------KVG----VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 358 (409)
Q Consensus 306 --~~~a~div~~k~~---------~~G----i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hla 358 (409)
+.+..-+-..-+. +.. +..+.+.+++|+++|+.+.++++..+.........++
T Consensus 88 ~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~ 155 (513)
T PRK00915 88 LKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVV 155 (513)
T ss_pred hhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHH
No 259
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=66.53 E-value=1.4e+02 Score=30.88 Aligned_cols=106 Identities=18% Similarity=0.336 Sum_probs=63.4
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCC-CCCC---HHHHHHhHHHhhcc-CCCeEEeCCCCCCHHHHHHH
Q 015289 230 SSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPV-HRDD---WEGLGHVSHIAKDK-FGVSVAADESCRSLDDVKKI 304 (409)
Q Consensus 230 ~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~-~~~d---~~~~~~l~~~~~~~-~~ipIa~dEs~~~~~~~~~~ 304 (409)
-.++|++.-+-+.+. .+.++.|-+.++. .|+==. +.+. ++..++++ +. .++||.+| ++.+.++.+.+
T Consensus 211 g~l~V~aav~~~~~~-~~r~~~L~~aG~d--~I~vd~a~g~~~~~~~~i~~i~----~~~~~~~vi~G-~v~t~~~a~~l 282 (450)
T TIGR01302 211 GRLIVGAAVGTREFD-KERAEALVKAGVD--VIVIDSSHGHSIYVIDSIKEIK----KTYPDLDIIAG-NVATAEQAKAL 282 (450)
T ss_pred CCEEEEEEecCchhH-HHHHHHHHHhCCC--EEEEECCCCcHhHHHHHHHHHH----HhCCCCCEEEE-eCCCHHHHHHH
Confidence 356666665554433 4555566666664 555222 2121 22233333 34 46887774 56889999999
Q ss_pred HHcCCCCEEEeCCC-----------CCc---HHHHHHHHHHHHHcCCcEEEccC
Q 015289 305 VKGNLADVINIKLA-----------KVG---VLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 305 i~~~a~div~~k~~-----------~~G---i~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
++.| +|++.+-++ -+| ++...++++.|++++++++..+-
T Consensus 283 ~~aG-ad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGG 335 (450)
T TIGR01302 283 IDAG-ADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGG 335 (450)
T ss_pred HHhC-CCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCC
Confidence 9988 598854321 134 22335677888899999998443
No 260
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=66.49 E-value=1.8e+02 Score=30.92 Aligned_cols=141 Identities=16% Similarity=0.190 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhh----CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCc-
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV----HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV- 260 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~----~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~- 260 (409)
+.+..++++.++.+.|..-+.+-+-. .++.+.++.|++. +-.+.|..|-+-.+. -|+..++.++...++|-
T Consensus 43 D~~atv~Qi~~L~~aGceiVRvtvp~--~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~--~A~~a~~~vdkiRINPGN 118 (606)
T PRK00694 43 DVDGTVRQICALQEWGCDIVRVTVQG--LKEAQACEHIKERLIQQGISIPLVADIHFFPQ--AAMHVADFVDKVRINPGN 118 (606)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHhHHHHHHHHhccCCCCCEEeecCCChH--HHHHHHHhcCceEECCcc
Confidence 55677889999999999999998853 5777777777764 567899999986554 34444444443322210
Q ss_pred --e----eecCC-CCCC--------HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHH
Q 015289 261 --L----FEQPV-HRDD--------WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLG 324 (409)
Q Consensus 261 --~----iEeP~-~~~d--------~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~ 324 (409)
. |+.-. ..++ -+.+..+-+.++ +.++||=.|=+..|+.+ ++++... | +--| +..
T Consensus 119 i~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ak-e~~~~IRIGvN~GSL~~--~i~~~yG-~------tpegmVeS 188 (606)
T PRK00694 119 YVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCK-RLGKAMRIGVNHGSLSE--RVMQRYG-D------TIEGMVYS 188 (606)
T ss_pred cCCccccccccccchhhhhhhhhhHHHHHHHHHHHHH-HCCCCEEEecCCcCchH--HHHHHhC-C------CHHHHHHH
Confidence 1 11100 0000 122333333222 56889988888888863 3443211 2 2347 556
Q ss_pred HHHHHHHHHHcCCcEE
Q 015289 325 ALEIIEVVRASGLNLM 340 (409)
Q Consensus 325 ~~~i~~~A~~~gi~~~ 340 (409)
+++-+++|++.|..=.
T Consensus 189 Ale~~~i~e~~~f~di 204 (606)
T PRK00694 189 ALEYIEVCEKLDYRDV 204 (606)
T ss_pred HHHHHHHHHHCCCCcE
Confidence 7888999998887643
No 261
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=66.30 E-value=1e+02 Score=30.82 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=44.0
Q ss_pred ccCCCeEEeCC-CCCC--HHHHHHHHHcC----------CCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 283 DKFGVSVAADE-SCRS--LDDVKKIVKGN----------LADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 283 ~~~~ipIa~dE-s~~~--~~~~~~~i~~~----------a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++.++||++-= ...+ ...++++++.| .++-|++|-+..- +..++++.++|+.+|+.+-
T Consensus 89 ~~~~VPValHLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~GvsVE 163 (350)
T PRK09197 89 EHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAGMTLE 163 (350)
T ss_pred HHCCCCEEEECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 36689999763 3445 55667777665 2788999999874 5568999999999999874
No 262
>PRK00208 thiG thiazole synthase; Reviewed
Probab=66.07 E-value=1.2e+02 Score=28.68 Aligned_cols=122 Identities=20% Similarity=0.184 Sum_probs=77.4
Q ss_pred eeecCCCHHHHHHHHHHHHHc-CCCeEEEecCCC----hhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 015289 180 ITIPIVSPAEAAELASKYRKQ-GFTTLKLKVGKN----LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLY 253 (409)
Q Consensus 180 ~~i~~~~~~~~~~~~~~~~~~-Gf~~~KiKvG~~----~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~ 253 (409)
.+.+..+.+|.+..++-.++. |-+-+|+.|-.| +..-.+.+++.++. -.++..+-= +.=|+ ..+++|+
T Consensus 68 NTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpy--c~~d~----~~ak~l~ 141 (250)
T PRK00208 68 NTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPY--CTDDP----VLAKRLE 141 (250)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEE--eCCCH----HHHHHHH
Confidence 456677888876666555443 578899988543 23445667777775 345554411 11134 4556677
Q ss_pred hCCCCCceeecC----CC----CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 254 EMGVTPVLFEQP----VH----RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 254 ~~~l~~~~iEeP----~~----~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+.+.. .+ -| +- ..+.+.++.+.+ ..++||..|=.+.+++|+.+.++.|+ |.+.+
T Consensus 142 ~~G~~--~v-mPlg~pIGsg~gi~~~~~i~~i~e----~~~vpVIveaGI~tpeda~~AmelGA-dgVlV 203 (250)
T PRK00208 142 EAGCA--AV-MPLGAPIGSGLGLLNPYNLRIIIE----QADVPVIVDAGIGTPSDAAQAMELGA-DAVLL 203 (250)
T ss_pred HcCCC--Ee-CCCCcCCCCCCCCCCHHHHHHHHH----hcCCeEEEeCCCCCHHHHHHHHHcCC-CEEEE
Confidence 77754 55 33 11 124555566543 46899999999999999999999984 77655
No 263
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=65.68 E-value=1.5e+02 Score=29.59 Aligned_cols=133 Identities=17% Similarity=0.255 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHH-HHhCCCCCceeec
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK-LYEMGVTPVLFEQ 264 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~-L~~~~l~~~~iEe 264 (409)
+.+...+++.++.+.|..-+.+-+-. .++.+.+..|++.. .+.|..|-+--|. -|++.++. .+...++
T Consensus 40 Dv~atv~Qi~~L~~aGceiVRvav~~--~~~a~al~~I~~~~-~iPlvADIHFd~~--lAl~a~~~G~~~iRIN------ 108 (360)
T PRK00366 40 DVEATVAQIKRLARAGCEIVRVAVPD--MEAAAALPEIKKQL-PVPLVADIHFDYR--LALAAAEAGADALRIN------ 108 (360)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEccCC--HHHHHhHHHHHHcC-CCCEEEecCCCHH--HHHHHHHhCCCEEEEC------
Confidence 45667888999999999999988843 57888899998876 3889999875554 44444444 3322222
Q ss_pred CCCCCC-HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCc
Q 015289 265 PVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLN 338 (409)
Q Consensus 265 P~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~ 338 (409)
|-.-.. .+.++++.+.++ ..++||=.|=+.-|++ +++++.. + +++--+ +..+++-++++++.|..
T Consensus 109 PGNig~~~~~v~~vv~~ak-~~~ipIRIGvN~GSL~--~~~~~~y--g----~~t~eamveSAl~~~~~le~~~f~ 175 (360)
T PRK00366 109 PGNIGKRDERVREVVEAAK-DYGIPIRIGVNAGSLE--KDLLEKY--G----EPTPEALVESALRHAKILEELGFD 175 (360)
T ss_pred CCCCCchHHHHHHHHHHHH-HCCCCEEEecCCccCh--HHHHHHc--C----CCCHHHHHHHHHHHHHHHHHCCCC
Confidence 222222 344555554444 4589999998888876 3444421 1 123236 55678888888888876
No 264
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=65.47 E-value=1.2e+02 Score=28.58 Aligned_cols=122 Identities=19% Similarity=0.169 Sum_probs=78.0
Q ss_pred eeecCCCHHHHHHHHHHHHHc-CCCeEEEecCCCh----hHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 015289 180 ITIPIVSPAEAAELASKYRKQ-GFTTLKLKVGKNL----KEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLY 253 (409)
Q Consensus 180 ~~i~~~~~~~~~~~~~~~~~~-Gf~~~KiKvG~~~----~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~ 253 (409)
.+.+..+.+|.+..++-.++. |-+-+|+.|-.|. ....+.+++.++. -.++..+-= +.=|+ ..+++|+
T Consensus 68 NTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpy--c~dd~----~~ar~l~ 141 (248)
T cd04728 68 NTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPY--CTDDP----VLAKRLE 141 (248)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEE--eCCCH----HHHHHHH
Confidence 456777888876666555554 5788999986432 2445667777775 345554411 11133 4556677
Q ss_pred hCCCCCceeecC----CC----CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 254 EMGVTPVLFEQP----VH----RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 254 ~~~l~~~~iEeP----~~----~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+.+.. .+ -| +. ..+.+.++.+.+ ..++||..|=.+.+++|+.++++.|+ |.+.+
T Consensus 142 ~~G~~--~v-mPlg~pIGsg~Gi~~~~~I~~I~e----~~~vpVI~egGI~tpeda~~AmelGA-dgVlV 203 (248)
T cd04728 142 DAGCA--AV-MPLGSPIGSGQGLLNPYNLRIIIE----RADVPVIVDAGIGTPSDAAQAMELGA-DAVLL 203 (248)
T ss_pred HcCCC--Ee-CCCCcCCCCCCCCCCHHHHHHHHH----hCCCcEEEeCCCCCHHHHHHHHHcCC-CEEEE
Confidence 77754 55 33 11 124555666653 46899999999999999999999985 76654
No 265
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=65.10 E-value=19 Score=34.82 Aligned_cols=57 Identities=18% Similarity=0.315 Sum_probs=45.0
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 283 ~~~~ipIa~d-Es~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++.++||++- ....+++.+.++++.| ++-|.+|.+..- +..++++.++|+++|+.+-
T Consensus 70 ~~~~vPValHLDH~~~~e~i~~ai~~G-ftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VE 131 (287)
T PF01116_consen 70 EEASVPVALHLDHGKDFEDIKRAIDAG-FTSVMIDGSALPFEENIAITREVVEYAHAYGVSVE 131 (287)
T ss_dssp HHSTSEEEEEEEEE-SHHHHHHHHHHT-SSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEE
T ss_pred HHcCCCEEeecccCCCHHHHHHHHHhC-cccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEE
Confidence 4678999976 4567889999999987 699999999874 6678999999999999874
No 266
>PRK09389 (R)-citramalate synthase; Provisional
Probab=65.08 E-value=1e+02 Score=32.21 Aligned_cols=103 Identities=19% Similarity=0.366 Sum_probs=68.4
Q ss_pred eCCCC----CCHHHHHHHHHHHHhCCCCCceeec--CCC-CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHc
Q 015289 235 DANEG----YKPQEAVEVLEKLYEMGVTPVLFEQ--PVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307 (409)
Q Consensus 235 DaN~~----w~~~~A~~~~~~L~~~~l~~~~iEe--P~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 307 (409)
|.+|+ |+.++-+++++.|.+.|+. .||= |.. +.|++..+++.+ ......|+.-= -....|+..+++.
T Consensus 12 DG~Q~~g~~~s~e~K~~ia~~L~~~Gv~--~IE~G~p~~~~~d~e~v~~i~~---~~~~~~i~a~~-r~~~~di~~a~~~ 85 (488)
T PRK09389 12 DGEQTPGVSLTPEEKLEIARKLDELGVD--VIEAGSAITSEGEREAIKAVTD---EGLNAEICSFA-RAVKVDIDAALEC 85 (488)
T ss_pred CcCCCCCCCcCHHHHHHHHHHHHHcCCC--EEEEeCCcCCHHHHHHHHHHHh---cCCCcEEEeec-ccCHHHHHHHHhC
Confidence 66664 6889999999999999986 9998 533 457777777764 22344444311 2346788888887
Q ss_pred CCCCEEEeCCCCC-------------c-HHHHHHHHHHHHHcCCcEEEccC
Q 015289 308 NLADVINIKLAKV-------------G-VLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 308 ~a~div~~k~~~~-------------G-i~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
+ ++.+.+=.... - +..+.+.+++|+++|+.+.++.+
T Consensus 86 g-~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~e 135 (488)
T PRK09389 86 D-VDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGE 135 (488)
T ss_pred C-cCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 6 46655432221 1 23456778999999998877554
No 267
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=64.79 E-value=1.8e+02 Score=30.41 Aligned_cols=111 Identities=20% Similarity=0.314 Sum_probs=63.0
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCC---HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHc
Q 015289 231 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD---WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307 (409)
Q Consensus 231 ~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d---~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 307 (409)
.+++++--+.. ++..+.++.|-+.++....+ +.-+.+. .+..+++++ ...++||.+| ++.+.+..+++++.
T Consensus 213 rl~Vgaav~~~-~~~~~ra~~Lv~aGVd~i~~-D~a~g~~~~~~~~i~~i~~---~~~~~~vi~g-~~~t~~~~~~l~~~ 286 (475)
T TIGR01303 213 RLRIGAAVGIN-GDVGGKAKALLDAGVDVLVI-DTAHGHQVKMISAIKAVRA---LDLGVPIVAG-NVVSAEGVRDLLEA 286 (475)
T ss_pred CceehheeeeC-ccHHHHHHHHHHhCCCEEEE-eCCCCCcHHHHHHHHHHHH---HCCCCeEEEe-ccCCHHHHHHHHHh
Confidence 34444443332 23345666666666543222 3333222 222333332 1236898885 46788899999998
Q ss_pred CCCCEEEe-----------CCCCCc---HHHHHHHHHHHHHcCCcEEEccCCchH
Q 015289 308 NLADVINI-----------KLAKVG---VLGALEIIEVVRASGLNLMIGGMVETR 348 (409)
Q Consensus 308 ~a~div~~-----------k~~~~G---i~~~~~i~~~A~~~gi~~~~~~~~es~ 348 (409)
| +|++.+ ..+-+| ++..+++++.|+++|++++-.+-+.++
T Consensus 287 G-~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~ 340 (475)
T TIGR01303 287 G-ANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHP 340 (475)
T ss_pred C-CCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCCCH
Confidence 8 588751 122235 334467778889999999887655444
No 268
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=64.50 E-value=1.8e+02 Score=30.32 Aligned_cols=61 Identities=23% Similarity=0.425 Sum_probs=41.4
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC-----------CCCCc---HHHHHHHHHHHHHcCCcEEEccCCchH
Q 015289 286 GVSVAADESCRSLDDVKKIVKGNLADVINIK-----------LAKVG---VLGALEIIEVVRASGLNLMIGGMVETR 348 (409)
Q Consensus 286 ~ipIa~dEs~~~~~~~~~~i~~~a~div~~k-----------~~~~G---i~~~~~i~~~A~~~gi~~~~~~~~es~ 348 (409)
+++|.+|. +.+.+..+.+++.| +|++.+- .+-+| ++...++++.|+++|++++--+-..++
T Consensus 268 ~~~v~agn-v~t~~~a~~l~~aG-ad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~ 342 (479)
T PRK07807 268 GVPIVAGN-VVTAEGTRDLVEAG-ADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHP 342 (479)
T ss_pred CCeEEeec-cCCHHHHHHHHHcC-CCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCH
Confidence 57887764 57888999999988 6997621 12234 334456777777899999875544443
No 269
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=63.47 E-value=1.7e+02 Score=29.33 Aligned_cols=93 Identities=22% Similarity=0.367 Sum_probs=55.4
Q ss_pred HHHHHHHHhCCCCCceeecCCCCC--CHHHHHHhHHHhhccCC-CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC---C
Q 015289 246 VEVLEKLYEMGVTPVLFEQPVHRD--DWEGLGHVSHIAKDKFG-VSVAADESCRSLDDVKKIVKGNLADVINIKLA---K 319 (409)
Q Consensus 246 ~~~~~~L~~~~l~~~~iEeP~~~~--d~~~~~~l~~~~~~~~~-ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~---~ 319 (409)
.+.++.|-+.++....|--.--.. -.+.++++++ ..+ +||.+|- +.+.+.++++++.| +|++.+-+. -
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~----~~~~~~viaGN-V~T~e~a~~L~~aG-ad~vkVGiGpGsi 183 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKK----KFPDVPVIAGN-VVTYEGAKDLIDAG-ADAVKVGIGPGSI 183 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHH----HSTTSEEEEEE-E-SHHHHHHHHHTT--SEEEESSSSSTT
T ss_pred HHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHH----hCCCceEEecc-cCCHHHHHHHHHcC-CCEEEEeccCCcc
Confidence 455566665555423332111110 1223344433 344 8998875 88999999999998 699876633 1
Q ss_pred C--------c---HHHHHHHHHHHHHcCCcEEEccC
Q 015289 320 V--------G---VLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 320 ~--------G---i~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
| | ++...++++.|++++++++-.+-
T Consensus 184 CtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGG 219 (352)
T PF00478_consen 184 CTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGG 219 (352)
T ss_dssp BHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS
T ss_pred cccccccccCCcHHHHHHHHHHHhhhccCceeecCC
Confidence 2 3 34557889999999999987553
No 270
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=62.56 E-value=1.4e+02 Score=28.62 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=12.0
Q ss_pred EeCCCCCCHHHHHHHHHHHHhCCC
Q 015289 234 LDANEGYKPQEAVEVLEKLYEMGV 257 (409)
Q Consensus 234 vDaN~~w~~~~A~~~~~~L~~~~l 257 (409)
+=...--+.+++.+++++|++.+.
T Consensus 32 aGPCsie~~~~~~~~A~~lk~~g~ 55 (266)
T PRK13398 32 AGPCAVESEEQMVKVAEKLKELGV 55 (266)
T ss_pred EeCCcCCCHHHHHHHHHHHHHcCC
Confidence 333333455555555555555543
No 271
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=62.39 E-value=84 Score=28.66 Aligned_cols=108 Identities=15% Similarity=0.206 Sum_probs=70.6
Q ss_pred CcEEEEeCCCCC-------CHHHHHHHHHHHHhCCCCCcee---ecCC-CCCCHHHHHHhHHHhhccCCCeEEeCCCCCC
Q 015289 229 DSSFILDANEGY-------KPQEAVEVLEKLYEMGVTPVLF---EQPV-HRDDWEGLGHVSHIAKDKFGVSVAADESCRS 297 (409)
Q Consensus 229 ~~~l~vDaN~~w-------~~~~A~~~~~~L~~~~l~~~~i---EeP~-~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~ 297 (409)
++.+..+.+.+= +..+..++++..++.|.. |+ -++. .....+.++.+++ ..++||...--+.+
T Consensus 10 ~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~--~l~v~~~~~~~~g~~~~~~~i~~----~v~iPi~~~~~i~~ 83 (217)
T cd00331 10 GLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAA--AISVLTEPKYFQGSLEDLRAVRE----AVSLPVLRKDFIID 83 (217)
T ss_pred CceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCC--EEEEEeCccccCCCHHHHHHHHH----hcCCCEEECCeecC
Confidence 356666666521 223456778888887753 44 1222 2235555666653 46899998877778
Q ss_pred HHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEEcc
Q 015289 298 LDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGG 343 (409)
Q Consensus 298 ~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~~~ 343 (409)
..++..+.+.| +|.+.+...-.......++.+.+...|+.+++..
T Consensus 84 ~~~v~~~~~~G-ad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v 128 (217)
T cd00331 84 PYQIYEARAAG-ADAVLLIVAALDDEQLKELYELARELGMEVLVEV 128 (217)
T ss_pred HHHHHHHHHcC-CCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 87888888888 5888765554444556778888899999986543
No 272
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=62.08 E-value=74 Score=30.44 Aligned_cols=94 Identities=21% Similarity=0.269 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHH-cCCCeEEEecCCChhHHHHHHHHHHhhC-CCc---EE--EEe-CCCCC-----C---HHHHHHHH
Q 015289 186 SPAEAAELASKYRK-QGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDS---SF--ILD-ANEGY-----K---PQEAVEVL 249 (409)
Q Consensus 186 ~~~~~~~~~~~~~~-~Gf~~~KiKvG~~~~~d~~~l~avr~~~-~~~---~l--~vD-aN~~w-----~---~~~A~~~~ 249 (409)
++++..+.+.+..+ .|...+||.=| .+-.++++++++++ |=+ .| .-| ..++| + .+++++.+
T Consensus 91 ~~~~av~~a~r~~~~aGa~aVkiEdg---~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra 167 (264)
T PRK00311 91 SPEQALRNAGRLMKEAGAHAVKLEGG---EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDA 167 (264)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEcCc---HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHH
Confidence 56776666655555 89999999865 34567888888764 310 01 111 11222 2 45778888
Q ss_pred HHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEE
Q 015289 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA 290 (409)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa 290 (409)
+.+++.|....++|-+ +. +..+++++ ++.+|+.
T Consensus 168 ~a~~eAGA~~i~lE~v-~~---~~~~~i~~----~l~iP~i 200 (264)
T PRK00311 168 KALEEAGAFALVLECV-PA---ELAKEITE----ALSIPTI 200 (264)
T ss_pred HHHHHCCCCEEEEcCC-CH---HHHHHHHH----hCCCCEE
Confidence 8999998766677876 32 34666764 5677875
No 273
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=61.35 E-value=1.7e+02 Score=28.76 Aligned_cols=136 Identities=23% Similarity=0.296 Sum_probs=75.5
Q ss_pred HHHHHHHhhCCCcEEEEeCCC----CCCHHHHHHHHHHHHhCCCCCcee----e--cCCCCCCHHHHHHhHHHhhccCCC
Q 015289 218 EVLRAIRAVHPDSSFILDANE----GYKPQEAVEVLEKLYEMGVTPVLF----E--QPVHRDDWEGLGHVSHIAKDKFGV 287 (409)
Q Consensus 218 ~~l~avr~~~~~~~l~vDaN~----~w~~~~A~~~~~~L~~~~l~~~~i----E--eP~~~~d~~~~~~l~~~~~~~~~i 287 (409)
+-++.+|+..++..+.+--+. .|+.+++.+..+.++...+.+ -+ | +|-...|++.+.+.-+.+++.+++
T Consensus 101 ~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel-~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~v 179 (326)
T cd02811 101 ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAI-HLNPLQEAVQPEGDRDFRGWLERIEELVKALSV 179 (326)
T ss_pred hHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEE-eCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCC
Confidence 567777887776666544433 568888777777765322210 11 2 344444664332211223446789
Q ss_pred eEEeCCC--CCCHHHHHHHHHcCCCCEEEeCCC-------------------------CCcHHHHHHHHHHHHHc-CCcE
Q 015289 288 SVAADES--CRSLDDVKKIVKGNLADVINIKLA-------------------------KVGVLGALEIIEVVRAS-GLNL 339 (409)
Q Consensus 288 pIa~dEs--~~~~~~~~~~i~~~a~div~~k~~-------------------------~~Gi~~~~~i~~~A~~~-gi~~ 339 (409)
||..=++ ..+..+++.+.+.| +|++.+.-. .+|+.....+.+..+.. ++++
T Consensus 180 PVivK~~g~g~s~~~a~~l~~~G-vd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipI 258 (326)
T cd02811 180 PVIVKEVGFGISRETAKRLADAG-VKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPL 258 (326)
T ss_pred CEEEEecCCCCCHHHHHHHHHcC-CCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcE
Confidence 9998654 24577787777776 788875321 01322222333334444 7888
Q ss_pred EEccCCchHHHHHHHH
Q 015289 340 MIGGMVETRLAMGFAG 355 (409)
Q Consensus 340 ~~~~~~es~i~~~~~~ 355 (409)
+..+-+.++.-..-++
T Consensus 259 iasGGIr~~~dv~kal 274 (326)
T cd02811 259 IASGGIRNGLDIAKAL 274 (326)
T ss_pred EEECCCCCHHHHHHHH
Confidence 8777666665444433
No 274
>PRK08185 hypothetical protein; Provisional
Probab=61.18 E-value=1.6e+02 Score=28.44 Aligned_cols=118 Identities=14% Similarity=0.250 Sum_probs=70.4
Q ss_pred HHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhh-C-CCcE----EE-E---------eCCCC-C-CHHHHHHHHHHHH
Q 015289 193 LASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDSS----FI-L---------DANEG-Y-KPQEAVEVLEKLY 253 (409)
Q Consensus 193 ~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~-~-~~~~----l~-v---------DaN~~-w-~~~~A~~~~~~L~ 253 (409)
.++++.+.||+.+=+.-. .+.++.++..+.+.+. . -++. |- + +.+.. + ++++|.+|.+...
T Consensus 83 ~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~Tg 162 (283)
T PRK08185 83 DVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTG 162 (283)
T ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhC
Confidence 355667789999988865 4566777776666642 1 1111 10 1 11111 4 6899999988742
Q ss_pred -hC-CC-----CCceeecCC-CCCCHHHHHHhHHHhhccCCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 254 -EM-GV-----TPVLFEQPV-HRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 254 -~~-~l-----~~~~iEeP~-~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
++ -+ +- .++..+ +.-+++.++++++ .+++|+.+ |=|-...++++++++.|. .=+|+.
T Consensus 163 vD~LAvaiGt~HG-~y~~~~kp~L~~e~l~~I~~----~~~iPLVlHGgsg~~~e~~~~ai~~GI-~KiNi~ 228 (283)
T PRK08185 163 VDTLAVAIGTAHG-IYPKDKKPELQMDLLKEINE----RVDIPLVLHGGSANPDAEIAESVQLGV-GKINIS 228 (283)
T ss_pred CCEEEeccCcccC-CcCCCCCCCcCHHHHHHHHH----hhCCCEEEECCCCCCHHHHHHHHHCCC-eEEEeC
Confidence 11 01 11 123332 3347888888875 56888875 455566778999999884 444554
No 275
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=60.81 E-value=1.2e+02 Score=30.22 Aligned_cols=125 Identities=15% Similarity=0.181 Sum_probs=80.8
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhCCCC-------C--ceeecCCCCCCH----------------HHHHHhHHHh--h
Q 015289 230 SSFILDANEGYKPQEAVEVLEKLYEMGVT-------P--VLFEQPVHRDDW----------------EGLGHVSHIA--K 282 (409)
Q Consensus 230 ~~l~vDaN~~w~~~~A~~~~~~L~~~~l~-------~--~~iEeP~~~~d~----------------~~~~~l~~~~--~ 282 (409)
.-+++=.-.--+.++|++++++|++.+-. + .++|-|-....| +|++.+++.+ .
T Consensus 54 llvI~GPCSIed~e~a~eyA~~Lk~l~~~~~d~l~ivmR~y~~KPRTs~g~kGl~~DP~ldgs~~i~~GL~~~R~ll~~~ 133 (349)
T PRK09261 54 LLVVVGPCSIHDPKAALEYARRLAKLREELKDKLEIVMRVYFEKPRTTVGWKGLINDPDLDGSFDINDGLRIARKLLLDI 133 (349)
T ss_pred eEEEEcCCcCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCCCCcCCCcCcCccccccHHHHHHHHHHHHHHH
Confidence 34555555667899999999988765411 0 377888654333 4555544432 2
Q ss_pred ccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc--HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHcc
Q 015289 283 DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG--VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 360 (409)
Q Consensus 283 ~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G--i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa 360 (409)
.++|+|++..= .++.....+.+ .+|+.++ | -++.....++|...++++.+-..+.+.+..+..+-.||+
T Consensus 134 ~e~GlpvatE~--ld~~~~~y~~d--lvs~~~I-----GARt~esq~hr~~asg~~~PVg~Kng~~g~i~~~l~Ai~aa~ 204 (349)
T PRK09261 134 NELGLPAATEF--LDPITPQYIAD--LISWGAI-----GARTTESQVHRELASGLSCPVGFKNGTDGNIKVAIDAIIAAS 204 (349)
T ss_pred HHhCCCeEEEe--cccccHHHHHh--hcceeee-----ccchhcCHHHHHHhcCCCCeeEecCCCCCCHHHHHhHHHHHh
Confidence 46899999743 22323332222 3566654 6 457778889999999999998877888887777766776
Q ss_pred CCC
Q 015289 361 LGC 363 (409)
Q Consensus 361 ~~~ 363 (409)
.|.
T Consensus 205 ~~H 207 (349)
T PRK09261 205 APH 207 (349)
T ss_pred CCc
Confidence 553
No 276
>PRK07094 biotin synthase; Provisional
Probab=60.25 E-value=1.4e+02 Score=29.00 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEccC
Q 015289 322 VLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 322 i~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
..+.++.++.++++|+.+..+.+
T Consensus 164 ~~~~~~~i~~l~~~Gi~v~~~~i 186 (323)
T PRK07094 164 FENRIACLKDLKELGYEVGSGFM 186 (323)
T ss_pred HHHHHHHHHHHHHcCCeecceEE
Confidence 56677888888888887654443
No 277
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=60.06 E-value=1.6e+02 Score=30.90 Aligned_cols=67 Identities=16% Similarity=0.281 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCCCCC----HHHHHHhHHHhhccCC--CeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD----WEGLGHVSHIAKDKFG--VSVAADESCRSLDDVKKIVKGNLADVIN 314 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d----~~~~~~l~~~~~~~~~--ipIa~dEs~~~~~~~~~~i~~~a~div~ 314 (409)
+.+++.+.++.|-+.++. .+|=+..+.. .+.++++++ ..+ ++|.+| ++.+.++++.+++.|+ |++.
T Consensus 239 ~~~~~~~ra~~Lv~aGvd--~i~vd~a~g~~~~~~~~i~~ir~----~~~~~~~V~aG-nV~t~e~a~~li~aGA-d~I~ 310 (502)
T PRK07107 239 NTRDYAERVPALVEAGAD--VLCIDSSEGYSEWQKRTLDWIRE----KYGDSVKVGAG-NVVDREGFRYLAEAGA-DFVK 310 (502)
T ss_pred ChhhHHHHHHHHHHhCCC--eEeecCcccccHHHHHHHHHHHH----hCCCCceEEec-cccCHHHHHHHHHcCC-CEEE
Confidence 345677888889988875 7886666554 555666654 333 667666 5688999999999885 8875
Q ss_pred e
Q 015289 315 I 315 (409)
Q Consensus 315 ~ 315 (409)
+
T Consensus 311 v 311 (502)
T PRK07107 311 V 311 (502)
T ss_pred E
Confidence 5
No 278
>PRK08444 hypothetical protein; Provisional
Probab=59.89 E-value=1.4e+02 Score=29.91 Aligned_cols=128 Identities=17% Similarity=0.154 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCCh----hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCc
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGKNL----KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV 260 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~----~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~ 260 (409)
.+++++.+.+++..+.|.+.|=+--|..+ +.=.+.++.|++..|++.+- +||+.|. .++.+ ..|+.
T Consensus 80 ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~-----a~s~~Ei-~~~a~--~~g~~-- 149 (353)
T PRK08444 80 MSHEEILEIVKNSVKRGIKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNLHVK-----AMTAAEV-DFLSR--KFGKS-- 149 (353)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeccCCCCCCHHHHHHHHHHHHHHCCCceEe-----eCCHHHH-HHHHH--HcCCC--
Confidence 37899999999999999999999877332 33356677888777876653 5787773 33222 23321
Q ss_pred eeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEE
Q 015289 261 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 261 ~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~ 340 (409)
.-+.+++|.++ .--.+|- .+.+-+.+-+.. ++-+.|.--.+++++...|++.|+++.
T Consensus 150 ---------~~e~l~~LkeA--Gl~~~~g------~~aEi~~~~vr~------~I~p~k~~~~~~~~i~~~a~~~Gi~~~ 206 (353)
T PRK08444 150 ---------YEEVLEDMLEY--GVDSMPG------GGAEIFDEEVRK------KICKGKVSSERWLEIHKYWHKKGKMSN 206 (353)
T ss_pred ---------HHHHHHHHHHh--CcccCCC------CCchhcCHHHHh------hhCCCCCCHHHHHHHHHHHHHcCCCcc
Confidence 11334555431 0111221 111111111111 122344445688999999999999986
Q ss_pred EccCC
Q 015289 341 IGGMV 345 (409)
Q Consensus 341 ~~~~~ 345 (409)
.+.++
T Consensus 207 sg~l~ 211 (353)
T PRK08444 207 ATMLF 211 (353)
T ss_pred ceeEE
Confidence 55444
No 279
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=59.84 E-value=1.6e+02 Score=28.08 Aligned_cols=122 Identities=16% Similarity=0.118 Sum_probs=76.4
Q ss_pred HHHHHHHHcCCCeEEEecC--CChhHHHHHHHHHHhh-CCC-cEEEEeCC---C-------CCC---HHHHHHHHHHHHh
Q 015289 192 ELASKYRKQGFTTLKLKVG--KNLKEDIEVLRAIRAV-HPD-SSFILDAN---E-------GYK---PQEAVEVLEKLYE 254 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG--~~~~~d~~~l~avr~~-~~~-~~l~vDaN---~-------~w~---~~~A~~~~~~L~~ 254 (409)
+.++++.+.|...+=+--- .+++-|-+.++.+-+. +++ +.+.+|+. + +|. --++.+++.++.+
T Consensus 95 e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~ 174 (262)
T PLN02446 95 ENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLA 174 (262)
T ss_pred HHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHH
Confidence 5567788889876654211 1222237788888777 454 67789985 3 242 1234556566665
Q ss_pred CCCCCcee------ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcC--CCCEEEeCCC
Q 015289 255 MGVTPVLF------EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN--LADVINIKLA 318 (409)
Q Consensus 255 ~~l~~~~i------EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~--a~div~~k~~ 318 (409)
.++. .++ |==+.--|++.++++++ .+++||.+.=-+.+..|+.++.+.+ ...++.=+.-
T Consensus 175 ~g~~-eii~TdI~rDGtl~G~d~el~~~l~~----~~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl 241 (262)
T PLN02446 175 AYCD-EFLVHGVDVEGKRLGIDEELVALLGE----HSPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSAL 241 (262)
T ss_pred hCCC-EEEEEEEcCCCcccCCCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeH
Confidence 5442 222 22233457887888874 5789999988899999999998864 3444444443
No 280
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=59.75 E-value=1.9e+02 Score=28.72 Aligned_cols=134 Identities=16% Similarity=0.239 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHH-HHhCCCCCceee
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK-LYEMGVTPVLFE 263 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~-L~~~~l~~~~iE 263 (409)
.+.+..++++.++.+.|..-+.+-+-. .++.+.+..|++.. .+.|..|-+--|.. |+..++. ++...++
T Consensus 31 ~Dv~atv~QI~~L~~aGceiVRvavp~--~~~A~al~~I~~~~-~iPlVADIHFd~~l--Al~a~~~g~dkiRIN----- 100 (346)
T TIGR00612 31 IDIDSTVAQIRALEEAGCDIVRVTVPD--RESAAAFEAIKEGT-NVPLVADIHFDYRL--AALAMAKGVAKVRIN----- 100 (346)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHhHHHHHhCC-CCCEEEeeCCCcHH--HHHHHHhccCeEEEC-----
Confidence 355677888999999999999988843 57888888888843 48899998866543 3333222 3333332
Q ss_pred cCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCc
Q 015289 264 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLN 338 (409)
Q Consensus 264 eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~ 338 (409)
|-.-.+.+..+++.+.++ ..++||=.|=+.-|++ +++++... +++.-+ +..+++-++++++.|..
T Consensus 101 -PGNig~~e~v~~vv~~ak-~~~ipIRIGVN~GSL~--~~~~~kyg------~~t~eamveSAl~~v~~le~~~F~ 166 (346)
T TIGR00612 101 -PGNIGFRERVRDVVEKAR-DHGKAMRIGVNHGSLE--RRLLEKYG------DATAEAMVQSALEEAAILEKLGFR 166 (346)
T ss_pred -CCCCCCHHHHHHHHHHHH-HCCCCEEEecCCCCCc--HHHHHHcC------CCCHHHHHHHHHHHHHHHHHCCCC
Confidence 433334455566555444 4589999988888876 34554321 123336 45678888888888876
No 281
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=59.26 E-value=1.7e+02 Score=28.20 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCCh---hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKNL---KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 262 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~---~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i 262 (409)
+++...+.++.+.+.|+..+-+.++... ..+.+.++.+++..+ ..+.+=- ..+.++ ++.+.+.|+....+
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~-~pvivK~--v~s~~~----a~~a~~~G~d~I~v 199 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWK-GPLILKG--ILTPED----ALRAVDAGADGIVV 199 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcC-CCEEEee--cCCHHH----HHHHHHCCCCEEEE
Confidence 5677777777777789999999887322 123467888888633 2343321 245554 45566677642233
Q ss_pred e-----cC-CCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 263 E-----QP-VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 263 E-----eP-~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
. +. .....++.+.++++.+ ...+||.++--+.+..|+.+++..| +|.|++
T Consensus 200 ~~~gG~~~~~g~~~~~~l~~i~~~~--~~~ipvia~GGI~~~~d~~kal~lG-Ad~V~i 255 (299)
T cd02809 200 SNHGGRQLDGAPATIDALPEIVAAV--GGRIEVLLDGGIRRGTDVLKALALG-ADAVLI 255 (299)
T ss_pred cCCCCCCCCCCcCHHHHHHHHHHHh--cCCCeEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 1 11 1122455666665422 1159999999999999999999987 588865
No 282
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=59.03 E-value=1.4e+02 Score=28.37 Aligned_cols=93 Identities=14% Similarity=0.179 Sum_probs=69.4
Q ss_pred HHHHHHHHhCCCCC--ceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHH
Q 015289 246 VEVLEKLYEMGVTP--VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL 323 (409)
Q Consensus 246 ~~~~~~L~~~~l~~--~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~ 323 (409)
.++++..++.|..- ..-|+-.-..+++.++++++ .+.+||-.-.-+.++.++.+....| +|.+.+=..-.+-.
T Consensus 64 ~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~----~v~~PvL~KDFIid~~QI~ea~~~G-ADavLLI~~~L~~~ 138 (247)
T PRK13957 64 VQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSS----ELKIPVLRKDFILDEIQIREARAFG-ASAILLIVRILTPS 138 (247)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHH----hcCCCEEeccccCCHHHHHHHHHcC-CCEEEeEHhhCCHH
Confidence 35666777766421 13355566678888888764 5789999999999999999888876 59987766555555
Q ss_pred HHHHHHHHHHHcCCcEEEcc
Q 015289 324 GALEIIEVVRASGLNLMIGG 343 (409)
Q Consensus 324 ~~~~i~~~A~~~gi~~~~~~ 343 (409)
...++...|++.|+.+.+-.
T Consensus 139 ~l~~l~~~a~~lGle~LVEV 158 (247)
T PRK13957 139 QIKSFLKHASSLGMDVLVEV 158 (247)
T ss_pred HHHHHHHHHHHcCCceEEEE
Confidence 67889999999999987643
No 283
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=58.95 E-value=1.7e+02 Score=27.89 Aligned_cols=146 Identities=18% Similarity=0.200 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHH----HHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCC-CCCc
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLR----AIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMG-VTPV 260 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~----avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~-l~~~ 260 (409)
+.+.+.+.+++.++.|-..+-+-.+...+++.+++. .+++. -++.|.+|....=..+.|++. ..... ++..
T Consensus 23 d~~~i~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~-~~~plsIDT~~~~v~eaaL~~---~~G~~iINsI 98 (261)
T PRK07535 23 DAAFIQKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEV-VDVPLCIDSPNPAAIEAGLKV---AKGPPLINSV 98 (261)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHh-CCCCEEEeCCCHHHHHHHHHh---CCCCCEEEeC
Confidence 567778889999999999999988865555566543 33332 368899997544334444333 22211 1111
Q ss_pred eeecCCCCCCHHHHHHhHHHhhccCCCeEEe---CCC-CC-CH----HHHHH----HHHcCCC-CEEEeCCCCC--c---
Q 015289 261 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA---DES-CR-SL----DDVKK----IVKGNLA-DVINIKLAKV--G--- 321 (409)
Q Consensus 261 ~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~---dEs-~~-~~----~~~~~----~i~~~a~-div~~k~~~~--G--- 321 (409)
+-|+ +..+.+..+.+ ++++|+++ ++. .. +. ..+.+ +.+.|.- +=+.+||.-. |
T Consensus 99 s~~~----~~~~~~~~l~~----~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~~~ 170 (261)
T PRK07535 99 SAEG----EKLEVVLPLVK----KYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYIDPLVLPLSAAQ 170 (261)
T ss_pred CCCC----ccCHHHHHHHH----HhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCcccCCh
Confidence 3332 11334445443 46777773 221 11 11 22222 3334421 3455887653 3
Q ss_pred --HHHHHHHHHHHHHc--CCcEEEcc
Q 015289 322 --VLGALEIIEVVRAS--GLNLMIGG 343 (409)
Q Consensus 322 --i~~~~~i~~~A~~~--gi~~~~~~ 343 (409)
..+.++.+...++. |+++.+|-
T Consensus 171 ~~~~~~l~~i~~l~~~~pg~p~l~G~ 196 (261)
T PRK07535 171 DAGPEVLETIRRIKELYPKVHTTCGL 196 (261)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 22346666666665 89988754
No 284
>PRK06256 biotin synthase; Validated
Probab=58.92 E-value=1.2e+02 Score=29.77 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHcCCcEEEccCC
Q 015289 322 VLGALEIIEVVRASGLNLMIGGMV 345 (409)
Q Consensus 322 i~~~~~i~~~A~~~gi~~~~~~~~ 345 (409)
..+.++.++.|+++|+++..+.++
T Consensus 186 ~~~~i~~i~~a~~~Gi~v~~~~I~ 209 (336)
T PRK06256 186 YEDRIDTCEMVKAAGIEPCSGGII 209 (336)
T ss_pred HHHHHHHHHHHHHcCCeeccCeEE
Confidence 567788889999999988765443
No 285
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=58.25 E-value=1.5e+02 Score=29.18 Aligned_cols=96 Identities=19% Similarity=0.321 Sum_probs=58.6
Q ss_pred HHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhh-C-CCc----EEE-E----e----CCCCC-CHHHHHHHHHHHHh
Q 015289 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDS----SFI-L----D----ANEGY-KPQEAVEVLEKLYE 254 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~-~-~~~----~l~-v----D----aN~~w-~~~~A~~~~~~L~~ 254 (409)
+.+.++++.||+.+=+... .++++.++..+.+.+. . -++ .|- + | ....| ++++|.+|+++..-
T Consensus 99 e~i~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~Tgv 178 (321)
T PRK07084 99 ELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGV 178 (321)
T ss_pred HHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCC
Confidence 3456778899999999876 4677777777666652 1 111 110 0 1 12225 49999999986421
Q ss_pred ----------CCCCCceeecC---CCCCCHHHHHHhHHHhhccC-CCeEEeCCC
Q 015289 255 ----------MGVTPVLFEQP---VHRDDWEGLGHVSHIAKDKF-GVSVAADES 294 (409)
Q Consensus 255 ----------~~l~~~~iEeP---~~~~d~~~~~~l~~~~~~~~-~ipIa~dEs 294 (409)
.|. |-..| -+.-|++-++++++ .+ ++|+.+-=.
T Consensus 179 D~LAvaiGt~HG~---Y~~~~~~~~p~Ld~d~L~~I~~----~~~~vPLVLHGg 225 (321)
T PRK07084 179 DSLAISIGTSHGA---YKFKPGQCPPPLRFDILEEIEK----RIPGFPIVLHGS 225 (321)
T ss_pred CEEeecccccccc---ccCCCCCCCCccCHHHHHHHHH----hcCCCCEEEeCC
Confidence 222 44422 13458888888875 46 689886543
No 286
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=58.07 E-value=1.4e+02 Score=28.43 Aligned_cols=104 Identities=16% Similarity=0.318 Sum_probs=64.1
Q ss_pred eCCC----CCCHHHHHHHHHHHHhCCCCCceeec--CC-CCCCHHHHHHhHHHhhccC-CCeEEe-C---CC---CCCHH
Q 015289 235 DANE----GYKPQEAVEVLEKLYEMGVTPVLFEQ--PV-HRDDWEGLGHVSHIAKDKF-GVSVAA-D---ES---CRSLD 299 (409)
Q Consensus 235 DaN~----~w~~~~A~~~~~~L~~~~l~~~~iEe--P~-~~~d~~~~~~l~~~~~~~~-~ipIa~-d---Es---~~~~~ 299 (409)
|.+| .|+.++-+++++.|.+.|+. .||= |. .+.+.+.++++.+. .. +..+.. . +. ..+..
T Consensus 8 DG~Q~~~~~~s~e~k~~i~~~L~~~Gv~--~IE~G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~ 82 (273)
T cd07941 8 DGTQGEGISFSVEDKLRIARKLDELGVD--YIEGGWPGSNPKDTEFFARAKKL---KLKHAKLAAFGSTRRAGVKAEEDP 82 (273)
T ss_pred CcCCCCCCCCCHHHHHHHHHHHHHcCCC--EEEecCCcCCHHHHHHHHHHHHc---CCCCcEEEEEecccccCCCccchH
Confidence 5555 46889999999999999986 9997 54 44555555555431 11 233332 1 11 12234
Q ss_pred HHHHHHHcCCCCEEEeCCCC--------Cc------HHHHHHHHHHHHHcCCcEEEccC
Q 015289 300 DVKKIVKGNLADVINIKLAK--------VG------VLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 300 ~~~~~i~~~a~div~~k~~~--------~G------i~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
+++.+++.| ++.+.+-.+. .| +....+.+++|+++|+.+...++
T Consensus 83 ~~~~a~~~g-~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~ 140 (273)
T cd07941 83 NLQALLEAG-TPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAE 140 (273)
T ss_pred HHHHHHhCC-CCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEE
Confidence 566677765 5777653221 12 22456789999999999877543
No 287
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=57.86 E-value=2.1e+02 Score=30.03 Aligned_cols=147 Identities=11% Similarity=0.175 Sum_probs=90.6
Q ss_pred HHHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhhCCCc--EEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCC
Q 015289 191 AELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDS--SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 267 (409)
Q Consensus 191 ~~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~~~~~--~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~ 267 (409)
...++...+.|...|.+-.. .|++.-...++++++++... .|..-.....+.+...++++.+.+.|.....|-+-.-
T Consensus 100 ~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaG 179 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIKDMAA 179 (499)
T ss_pred HHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcc
Confidence 44566777889999887765 34443344567777776433 3333334567899999999999999877667888777
Q ss_pred CCCHHHHHHhHHHhhccC--CCeEEeCCCCC---CHHHHHHHHHcCCCCEEEeCCCCCc-HH---HHHHHHHHHHHcCCc
Q 015289 268 RDDWEGLGHVSHIAKDKF--GVSVAADESCR---SLDDVKKIVKGNLADVINIKLAKVG-VL---GALEIIEVVRASGLN 338 (409)
Q Consensus 268 ~~d~~~~~~l~~~~~~~~--~ipIa~dEs~~---~~~~~~~~i~~~a~div~~k~~~~G-i~---~~~~i~~~A~~~gi~ 338 (409)
--......++-+.+++.. ++||...=... ........+++| +|++..-++-+| .+ .+-.++...+..|+.
T Consensus 180 ll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAG-ad~vDtai~Glg~~aGn~atE~vv~~L~~~g~~ 258 (499)
T PRK12330 180 LLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAG-VDVVDTAISSMSLGPGHNPTESLVEMLEGTGYT 258 (499)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcC-CCEEEeecccccccccchhHHHHHHHHHhcCCC
Confidence 666666777666666666 58887632211 222345566776 687654444333 22 123445555555544
No 288
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=57.68 E-value=1.8e+02 Score=27.74 Aligned_cols=15 Identities=20% Similarity=-0.011 Sum_probs=8.5
Q ss_pred EEEEEECCCceEEEE
Q 015289 78 AIRIELSNGCVGWGE 92 (409)
Q Consensus 78 iVrl~td~G~~G~GE 92 (409)
|+..+.-||....|.
T Consensus 3 I~D~TLRDG~Q~~~~ 17 (262)
T cd07948 3 IIDSTLREGEQFANA 17 (262)
T ss_pred EEECCCCCcCcCCCC
Confidence 445555677665554
No 289
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=57.66 E-value=2.7e+02 Score=29.89 Aligned_cols=142 Identities=15% Similarity=0.159 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhh----CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCc
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV----HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV 260 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~----~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~ 260 (409)
.+.+..++++.++.+.|..-+.+-+-. .++.+.++.|++. |-++.|..|-+-.+.. |+..++..+...++|-
T Consensus 38 ~D~~atv~Qi~~l~~aGceiVRvtv~~--~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~--A~~a~~~v~kiRINPG 113 (611)
T PRK02048 38 MDTEACVAQAKRIIDAGGEYVRLTTQG--VREAENLMNINIGLRSQGYMVPLVADVHFNPKV--ADVAAQYAEKVRINPG 113 (611)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHH--HHHHHHhhCCEEECCC
Confidence 355677889999999999999998853 5777777777763 5679999999877764 3444444444322211
Q ss_pred eeecC---C-----CCCCH--------HHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HH
Q 015289 261 LFEQP---V-----HRDDW--------EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VL 323 (409)
Q Consensus 261 ~iEeP---~-----~~~d~--------~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~ 323 (409)
=|=.+ + ..+++ +.+..+.+.++ +.++||=.|=+..|+.+ ++++... | +--| +.
T Consensus 114 N~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak-~~~~~iRIGvN~GSL~~--~i~~~yg-~------tpe~mVe 183 (611)
T PRK02048 114 NYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICK-ENHTAIRIGVNHGSLSD--RIMSRYG-D------TPEGMVE 183 (611)
T ss_pred cCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHH-HCCCCEEEecCCcCchH--HHHHHhC-C------ChHHHHH
Confidence 11111 0 01111 11222333222 56889988888888863 3443211 2 2236 55
Q ss_pred HHHHHHHHHHHcCCcEE
Q 015289 324 GALEIIEVVRASGLNLM 340 (409)
Q Consensus 324 ~~~~i~~~A~~~gi~~~ 340 (409)
.+++-+++|++.|..=.
T Consensus 184 SAle~~~i~e~~~f~di 200 (611)
T PRK02048 184 SCMEFLRICVEEHFTDV 200 (611)
T ss_pred HHHHHHHHHHHCCCCcE
Confidence 67888888888887633
No 290
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=57.61 E-value=1.7e+02 Score=27.51 Aligned_cols=117 Identities=16% Similarity=0.005 Sum_probs=73.1
Q ss_pred HHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhC-CCcEEEEeCC--C--------CCC--HHHHHHHHHHHHhCCCC
Q 015289 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILDAN--E--------GYK--PQEAVEVLEKLYEMGVT 258 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~-~~~~l~vDaN--~--------~w~--~~~A~~~~~~L~~~~l~ 258 (409)
+.++.+.+.|.. |+=+|.-.-+|-+.++.+.+.+ ..+.+.+|+. + +|+ .....+++++++++++.
T Consensus 87 e~~~~~l~~Ga~--~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~ 164 (243)
T TIGR01919 87 SSLRAALTGGRA--RVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSGGCS 164 (243)
T ss_pred HHHHHHHHcCCC--EEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhCCCC
Confidence 334556667776 4455633234666777776664 4577888974 2 243 22356788888888763
Q ss_pred CceeecCCC------CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHc--CCCCEEEe
Q 015289 259 PVLFEQPVH------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG--NLADVINI 315 (409)
Q Consensus 259 ~~~iEeP~~------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~--~a~div~~ 315 (409)
.++=--+. --|++.++++++ .+++||.+.=-+.+.+|+.++-+. ..++.+.+
T Consensus 165 -~ii~tdI~~dGt~~G~d~~l~~~l~~----~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gviv 224 (243)
T TIGR01919 165 -RVVVTDSKKDGLSGGPNELLLEVVAA----RTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIG 224 (243)
T ss_pred -EEEEEecCCcccCCCcCHHHHHHHHh----hCCCCEEEECCcCCHHHHHHHHhhccCCeeEEEE
Confidence 34433333 346777777764 578999998889999999887432 23555433
No 291
>PRK15063 isocitrate lyase; Provisional
Probab=57.53 E-value=1.9e+02 Score=29.75 Aligned_cols=95 Identities=17% Similarity=0.078 Sum_probs=66.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEe--------cC-------CChhHHHHHHHHHHhh----CCCcEE--EEeCCCC--
Q 015289 183 PIVSPAEAAELASKYRKQGFTTLKLK--------VG-------KNLKEDIEVLRAIRAV----HPDSSF--ILDANEG-- 239 (409)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~Gf~~~KiK--------vG-------~~~~~d~~~l~avr~~----~~~~~l--~vDaN~~-- 239 (409)
|...+.++.+.++.+.+.|.-.+-|. .| .+.++-+++|+++|.+ +.+.-| |-|+..+
T Consensus 156 GfGg~~nv~~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~l 235 (428)
T PRK15063 156 GFGGVLNAFELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADL 235 (428)
T ss_pred CCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCcccccc
Confidence 44566677888899999998877662 33 2456778899998874 333322 5688653
Q ss_pred --------------------------CCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHH
Q 015289 240 --------------------------YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 280 (409)
Q Consensus 240 --------------------------w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~ 280 (409)
-..++|++.+.+..+ +-...|+|-..+ |.+..+++++.
T Consensus 236 i~s~~d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-GAD~iw~Et~~~--d~ee~~~fa~~ 299 (428)
T PRK15063 236 LTSDVDERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAP-YADLIWCETSTP--DLEEARRFAEA 299 (428)
T ss_pred ccccccccccccccCCCccccccccccCHHHHHHHHHHHhc-CCCEEEeCCCCC--CHHHHHHHHHh
Confidence 357899999999888 656679996554 56677777753
No 292
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=57.05 E-value=1.9e+02 Score=27.94 Aligned_cols=98 Identities=17% Similarity=0.240 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeec----CCC----------CCCHHHHHHhHHH
Q 015289 215 EDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ----PVH----------RDDWEGLGHVSHI 280 (409)
Q Consensus 215 ~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEe----P~~----------~~d~~~~~~l~~~ 280 (409)
.-.+.++.+++..++..+.+--++.++.++..+.++.+++.+.. +||= |-. ..|.+.+.++.+.
T Consensus 85 ~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad--~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~ 162 (299)
T cd02940 85 YWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGAD--ALELNFSCPHGMPERGMGAAVGQDPELVEEICRW 162 (299)
T ss_pred HHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCC--EEEEECCCCCCCCCCCCchhhccCHHHHHHHHHH
Confidence 33334444433334566777777777777777777777766543 6663 322 0345566666655
Q ss_pred hhccCCCeEEeCCC--CCCHHHHHHHHHcCCCCEEE
Q 015289 281 AKDKFGVSVAADES--CRSLDDVKKIVKGNLADVIN 314 (409)
Q Consensus 281 ~~~~~~ipIa~dEs--~~~~~~~~~~i~~~a~div~ 314 (409)
+++.+++||..==+ ..+..++.+.++...+|.+.
T Consensus 163 v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~ 198 (299)
T cd02940 163 VREAVKIPVIAKLTPNITDIREIARAAKEGGADGVS 198 (299)
T ss_pred HHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEE
Confidence 55566778775433 22444555544444467764
No 293
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=56.53 E-value=2.5e+02 Score=30.25 Aligned_cols=149 Identities=9% Similarity=0.061 Sum_probs=94.5
Q ss_pred HHHHH-HHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhhCCCc----EEEEeCCCCCCHHHHHHHHHHHHhCCCCCc
Q 015289 187 PAEAA-ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDS----SFILDANEGYKPQEAVEVLEKLYEMGVTPV 260 (409)
Q Consensus 187 ~~~~~-~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~~~~~----~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~ 260 (409)
|+++. ..++...+.|...|.+--. .+++.-..-++++|+.|..+ .++. +-.+|.+...++++.+.+.|.+..
T Consensus 94 ~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~--sp~~t~e~~~~~ak~l~~~Gad~I 171 (596)
T PRK14042 94 ADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTT--SPVHTLDNFLELGKKLAEMGCDSI 171 (596)
T ss_pred ChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecC--CCCCCHHHHHHHHHHHHHcCCCEE
Confidence 44544 3567778899999876544 34444455678888876432 2344 447899999999999999988767
Q ss_pred eeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCC-C--HHHHHHHHHcCCCCEEEeCCCCCc-HH---HHHHHHHHHH
Q 015289 261 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCR-S--LDDVKKIVKGNLADVINIKLAKVG-VL---GALEIIEVVR 333 (409)
Q Consensus 261 ~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~-~--~~~~~~~i~~~a~div~~k~~~~G-i~---~~~~i~~~A~ 333 (409)
.|-+..---......++-+.++++.++||...=+.. + ......++++| +|++..-++-+| .+ ..-.++...+
T Consensus 172 ~IkDtaG~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaG-ad~iD~ai~glGg~tGn~~tE~lv~~L~ 250 (596)
T PRK14042 172 AIKDMAGLLTPTVTVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAG-CNHIDTAISSFSGGASHPPTEALVAALT 250 (596)
T ss_pred EeCCcccCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhC-CCEEEeccccccCCCCcHhHHHHHHHHH
Confidence 888887766666677766666777789987643221 1 22344566666 687655544443 22 2334455555
Q ss_pred HcCCc
Q 015289 334 ASGLN 338 (409)
Q Consensus 334 ~~gi~ 338 (409)
..|+.
T Consensus 251 ~~g~~ 255 (596)
T PRK14042 251 DTPYD 255 (596)
T ss_pred hcCCC
Confidence 55544
No 294
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=56.06 E-value=1.2e+02 Score=30.30 Aligned_cols=57 Identities=14% Similarity=0.140 Sum_probs=40.6
Q ss_pred ccCCCeEEeCC-CCCC-------------HHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 283 DKFGVSVAADE-SCRS-------------LDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 283 ~~~~ipIa~dE-s~~~-------------~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++.++||++-= .+.+ ...+++.++.| ++-+++|-+..= +..++++.++|+.+|+.+-
T Consensus 84 ~~~~VPValHLDHg~~~~~~~~~~~~~a~~~~~~~a~~~G-ftSVMiDgS~lp~eENI~~TkevVe~Ah~~gvsVE 158 (345)
T cd00946 84 EHYGVPVVLHTDHCAKKLLPWFDGLLEADEEYFKQHGEPL-FSSHMLDLSEEPLEENIEICKKYLERMAKINMWLE 158 (345)
T ss_pred HHCCCCEEEECCCCCCccchhhHHHHHHHHHHHHHhccCC-CceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 36789999763 3445 22333333444 688999999864 5668999999999999874
No 295
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=55.90 E-value=1.8e+02 Score=27.34 Aligned_cols=144 Identities=21% Similarity=0.241 Sum_probs=89.3
Q ss_pred eeecCCCHHHHHHHHHHHHHc-CCCeEEEecCCCh----hHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 015289 180 ITIPIVSPAEAAELASKYRKQ-GFTTLKLKVGKNL----KEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLY 253 (409)
Q Consensus 180 ~~i~~~~~~~~~~~~~~~~~~-Gf~~~KiKvG~~~----~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~ 253 (409)
.+.+..+.+|.+..++-.++. +-+-+|+.|-.|. ..-++.+++.+.. ..++.++- |+-++ .-++++|+
T Consensus 75 NTaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlP-----Y~~dD-~v~arrLe 148 (262)
T COG2022 75 NTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLP-----YTTDD-PVLARRLE 148 (262)
T ss_pred CccccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEee-----ccCCC-HHHHHHHH
Confidence 456777888876555444443 4677899875332 2346677777665 45555553 33222 24678888
Q ss_pred hCCCCC-ceeecCCCC----CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHH
Q 015289 254 EMGVTP-VLFEQPVHR----DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEI 328 (409)
Q Consensus 254 ~~~l~~-~~iEeP~~~----~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i 328 (409)
+.|... .=+=-|+-. .+...++-+. ++..+||..|--+.++.|....+|.| +|.|.+... +.++..-
T Consensus 149 e~GcaavMPl~aPIGSg~G~~n~~~l~iii----e~a~VPviVDAGiG~pSdAa~aMElG-~DaVL~NTA---iA~A~DP 220 (262)
T COG2022 149 EAGCAAVMPLGAPIGSGLGLQNPYNLEIII----EEADVPVIVDAGIGTPSDAAQAMELG-ADAVLLNTA---IARAKDP 220 (262)
T ss_pred hcCceEeccccccccCCcCcCCHHHHHHHH----HhCCCCEEEeCCCCChhHHHHHHhcc-cceeehhhH---hhccCCh
Confidence 877421 111233332 3444455554 35689999999999999999999998 698866543 3445555
Q ss_pred HHHHHHcCC
Q 015289 329 IEVVRASGL 337 (409)
Q Consensus 329 ~~~A~~~gi 337 (409)
..||+++..
T Consensus 221 v~MA~Af~~ 229 (262)
T COG2022 221 VAMARAFAL 229 (262)
T ss_pred HHHHHHHHH
Confidence 555555544
No 296
>PRK12999 pyruvate carboxylase; Reviewed
Probab=55.53 E-value=3.3e+02 Score=31.92 Aligned_cols=151 Identities=10% Similarity=0.150 Sum_probs=94.5
Q ss_pred HHHHHHH-HHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhhCCC--cEE--E---EeCCCC-CCHHHHHHHHHHHHhCC
Q 015289 187 PAEAAEL-ASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPD--SSF--I---LDANEG-YKPQEAVEVLEKLYEMG 256 (409)
Q Consensus 187 ~~~~~~~-~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~~~~--~~l--~---vDaN~~-w~~~~A~~~~~~L~~~~ 256 (409)
|++..+. ++...+.|...|.+-.. .+++.-...++++++.+.. ..+ . .|+... |+.+...++++.+.+.|
T Consensus 625 p~~v~~~~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~G 704 (1146)
T PRK12999 625 PDNVVRAFVREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAG 704 (1146)
T ss_pred CchHHHHHHHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 4444443 67778889999887655 2333333346677776532 222 2 366554 89999999999999999
Q ss_pred CCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCC---CHHHHHHHHHcCCCCEEEeCCCCCc-HHH---HHHHH
Q 015289 257 VTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCR---SLDDVKKIVKGNLADVINIKLAKVG-VLG---ALEII 329 (409)
Q Consensus 257 l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~---~~~~~~~~i~~~a~div~~k~~~~G-i~~---~~~i~ 329 (409)
.+...|=+-.---......++-+.+|+++++||...=+.. ........+++| +|++..-++-+| .++ .-.++
T Consensus 705 a~~i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~an~laA~~aG-ad~vD~av~glg~~tgn~~le~vv 783 (1146)
T PRK12999 705 AHILAIKDMAGLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNGLATYLAAAEAG-VDIVDVAVASMSGLTSQPSLNSIV 783 (1146)
T ss_pred CCEEEECCccCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHhC-CCEEEecchhhcCCcCCHHHHHHH
Confidence 8767888887766666677766666777889997643221 122345566676 688766655554 332 33444
Q ss_pred HHHHHcCCc
Q 015289 330 EVVRASGLN 338 (409)
Q Consensus 330 ~~A~~~gi~ 338 (409)
...+..|..
T Consensus 784 ~~L~~~~~~ 792 (1146)
T PRK12999 784 AALEGTERD 792 (1146)
T ss_pred HHHHhcCCC
Confidence 444555544
No 297
>PLN02979 glycolate oxidase
Probab=55.34 E-value=2.3e+02 Score=28.45 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=51.1
Q ss_pred CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCC---c--HHHHHHHHHHHHHcC--CcEEE
Q 015289 269 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV---G--VLGALEIIEVVRASG--LNLMI 341 (409)
Q Consensus 269 ~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~---G--i~~~~~i~~~A~~~g--i~~~~ 341 (409)
-+|+.++.|++ ..++||..-|- .+.+|++++++.| +|.+.+.-.-- . ......+.+++++.+ ++++.
T Consensus 210 ltW~dl~wlr~----~~~~PvivKgV-~~~~dA~~a~~~G-vd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~ 283 (366)
T PLN02979 210 LSWKDVQWLQT----ITKLPILVKGV-LTGEDARIAIQAG-AAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFL 283 (366)
T ss_pred CCHHHHHHHHh----ccCCCEEeecC-CCHHHHHHHHhcC-CCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEE
Confidence 35677777764 67899999987 5789999999988 68876654321 1 112223334444433 88888
Q ss_pred ccCCchHHHHHHH
Q 015289 342 GGMVETRLAMGFA 354 (409)
Q Consensus 342 ~~~~es~i~~~~~ 354 (409)
.+-+.++.-..-+
T Consensus 284 dGGIr~G~Di~KA 296 (366)
T PLN02979 284 DGGVRRGTDVFKA 296 (366)
T ss_pred eCCcCcHHHHHHH
Confidence 7766555443333
No 298
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=55.20 E-value=1.2e+02 Score=27.74 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=43.2
Q ss_pred CHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCC
Q 015289 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGL 337 (409)
Q Consensus 270 d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi 337 (409)
+++..+++++ ..++|+..+=.+.++++++++++.| +|.+.+.-.. +...-.+.++++++|-
T Consensus 61 ~~~~i~~i~~----~~~~pv~~~GgI~~~e~~~~~~~~G-ad~vvigs~~--l~dp~~~~~i~~~~g~ 121 (234)
T cd04732 61 NLELIEEIVK----AVGIPVQVGGGIRSLEDIERLLDLG-VSRVIIGTAA--VKNPELVKELLKEYGG 121 (234)
T ss_pred CHHHHHHHHH----hcCCCEEEeCCcCCHHHHHHHHHcC-CCEEEECchH--HhChHHHHHHHHHcCC
Confidence 5666666654 5679999999999999999999988 7887653332 2333345666777765
No 299
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=55.16 E-value=68 Score=30.99 Aligned_cols=57 Identities=23% Similarity=0.369 Sum_probs=47.8
Q ss_pred ccCCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 283 DKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 283 ~~~~ipIa~dE-s~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++.++||++-- .+.+..++.+.++.| ..-+++|.+..- +.-++++.++|.+.|+.+-
T Consensus 72 ~~~~vPV~lHlDHg~~~~~~~~ai~~G-FsSvMiDgS~~~~eENi~~tkevv~~ah~~gvsVE 133 (286)
T COG0191 72 EKYGVPVALHLDHGASFEDCKQAIRAG-FSSVMIDGSHLPFEENIAITKEVVEFAHAYGVSVE 133 (286)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHhcC-CceEEecCCcCCHHHHHHHHHHHHHHHHHcCCcEE
Confidence 46789999875 455999999999987 688899999875 5568999999999999885
No 300
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=54.85 E-value=2.2e+02 Score=28.00 Aligned_cols=66 Identities=18% Similarity=0.337 Sum_probs=42.0
Q ss_pred CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCC-------CC----Cc---HHHHHHHHHHHHHcCCcEEEccCCchHHHHH
Q 015289 287 VSVAADESCRSLDDVKKIVKGNLADVINIKL-------AK----VG---VLGALEIIEVVRASGLNLMIGGMVETRLAMG 352 (409)
Q Consensus 287 ipIa~dEs~~~~~~~~~~i~~~a~div~~k~-------~~----~G---i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~ 352 (409)
+||..+ ++.+.++.+.+++.| +|++.+-. ++ +| ++...++.+.++.++++++..+-+.++-...
T Consensus 136 v~Vi~G-~v~t~~~A~~l~~aG-aD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~ 213 (325)
T cd00381 136 VDVIAG-NVVTAEAARDLIDAG-ADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIV 213 (325)
T ss_pred ceEEEC-CCCCHHHHHHHHhcC-CCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHH
Confidence 788763 458888899999887 68887521 11 22 2233566777788899999855444443333
Q ss_pred HH
Q 015289 353 FA 354 (409)
Q Consensus 353 ~~ 354 (409)
.+
T Consensus 214 kA 215 (325)
T cd00381 214 KA 215 (325)
T ss_pred HH
Confidence 33
No 301
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=54.80 E-value=47 Score=30.94 Aligned_cols=73 Identities=19% Similarity=0.283 Sum_probs=49.1
Q ss_pred eCCCC-CCHHHHHHHHHHHHh-CCCCCceee------cCCCCCCHHHHHHhHHHhhccC-CCeEEeCCCCCCHHHHHHHH
Q 015289 235 DANEG-YKPQEAVEVLEKLYE-MGVTPVLFE------QPVHRDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIV 305 (409)
Q Consensus 235 DaN~~-w~~~~A~~~~~~L~~-~~l~~~~iE------eP~~~~d~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i 305 (409)
+++.- .+.++...+....++ ++..+.|+| +|.+ .+-.+++++ .+ ++||..|=-+.+.+++++++
T Consensus 126 ~a~~~p~~~~~~aa~~~lA~~~~g~~~vYlE~gs~~g~~v~---~e~i~~v~~----~~~~~pl~vGGGIrs~e~a~~l~ 198 (223)
T TIGR01768 126 KAKPIPYDKEDLAAYAAMAEEMLGMPIIYLEAGSGAPEPVP---PELVAEVKK----VLDKARLFVGGGIRSVEKAREMA 198 (223)
T ss_pred cccccCCCcHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcC---HHHHHHHHH----HcCCCCEEEecCCCCHHHHHHHH
Confidence 44444 566665555554444 455557998 4554 344555543 34 79999999999999999999
Q ss_pred HcCCCCEEEe
Q 015289 306 KGNLADVINI 315 (409)
Q Consensus 306 ~~~a~div~~ 315 (409)
+.| +|.+.+
T Consensus 199 ~aG-AD~VVV 207 (223)
T TIGR01768 199 EAG-ADTIVT 207 (223)
T ss_pred HcC-CCEEEE
Confidence 877 577755
No 302
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=54.26 E-value=1.6e+02 Score=28.88 Aligned_cols=99 Identities=21% Similarity=0.343 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhh-C-CCcEE--------------EEeCCC-CC-CHHHHHHHHHHH
Q 015289 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDSSF--------------ILDANE-GY-KPQEAVEVLEKL 252 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~-~-~~~~l--------------~vDaN~-~w-~~~~A~~~~~~L 252 (409)
+.+.++++.||+.+=+... -++++.++..+.+.+. . -++.+ ..+.+. .| ++++|.+|+++.
T Consensus 88 e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~T 167 (307)
T PRK05835 88 ESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKES 167 (307)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhh
Confidence 4456678889999999877 3678888877777652 1 11111 111121 25 489999999864
Q ss_pred Hh----------CCCCCcee--ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHH
Q 015289 253 YE----------MGVTPVLF--EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLD 299 (409)
Q Consensus 253 ~~----------~~l~~~~i--EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~ 299 (409)
.- .|. |- .+| .-|++-++++++ .+++|+.+-=.-..+.
T Consensus 168 gvD~LAvaiGt~HG~---Yk~~~~p--~L~f~~L~~I~~----~~~iPLVLHGgSGip~ 217 (307)
T PRK05835 168 QVDYLAPAIGTSHGA---FKFKGEP--KLDFERLQEVKR----LTNIPLVLHGASAIPD 217 (307)
T ss_pred CCCEEEEccCccccc---cCCCCCC--ccCHHHHHHHHH----HhCCCEEEeCCCCCch
Confidence 31 222 32 443 458888888875 5789998765444444
No 303
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=54.03 E-value=3.1e+02 Score=29.46 Aligned_cols=146 Identities=13% Similarity=0.179 Sum_probs=78.7
Q ss_pred HHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhhCCCcEEE--EeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCC
Q 015289 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFI--LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR 268 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~~~~~~l~--vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~ 268 (409)
..++...+.|...|.+-.. .+.+.-...++.+++.|..+... ...+-.++.+...++++.+.+.|.....|=+-.-.
T Consensus 95 ~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~ 174 (582)
T TIGR01108 95 RFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIKDMAGI 174 (582)
T ss_pred HHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 3455666778877776654 23333333455556655444432 22333356777788888888877665566666555
Q ss_pred CCHHHHHHhHHHhhccCCCeEEeCCCC---CCHHHHHHHHHcCCCCEEEeCCCCCc-HH---HHHHHHHHHHHcCCc
Q 015289 269 DDWEGLGHVSHIAKDKFGVSVAADESC---RSLDDVKKIVKGNLADVINIKLAKVG-VL---GALEIIEVVRASGLN 338 (409)
Q Consensus 269 ~d~~~~~~l~~~~~~~~~ipIa~dEs~---~~~~~~~~~i~~~a~div~~k~~~~G-i~---~~~~i~~~A~~~gi~ 338 (409)
-......++-+.+++..++||...=+. .........+++| +|++..-++-+| -+ ..-.++...+..|+.
T Consensus 175 ~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAveaG-a~~vd~ai~GlG~~tGn~~le~vv~~L~~~g~~ 250 (582)
T TIGR01108 175 LTPKAAYELVSALKKRFGLPVHLHSHATTGMAEMALLKAIEAG-ADGIDTAISSMSGGTSHPPTETMVAALRGTGYD 250 (582)
T ss_pred cCHHHHHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhC-CCEEEeccccccccccChhHHHHHHHHHhcCCC
Confidence 555555555555555666777653221 1122334456666 577665555444 22 223344444445544
No 304
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=53.65 E-value=2.8e+02 Score=28.77 Aligned_cols=99 Identities=9% Similarity=0.076 Sum_probs=51.5
Q ss_pred HHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhhCCCcEEEEeC--CCCCCHHHHHHHHHHHHhCCCCCceeecCCCCC
Q 015289 193 LASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDA--NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD 269 (409)
Q Consensus 193 ~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~~~~~~l~vDa--N~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~ 269 (409)
.+++..+.|.+.|.+-.. .+...-.+.++.+++.|..+.+.+-. ...++.+...++++.+.+.|.....|=+-.---
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l 180 (448)
T PRK12331 101 FVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAGIL 180 (448)
T ss_pred HHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 445555667766666554 22222222344445544333222211 124556666667777776665545666666555
Q ss_pred CHHHHHHhHHHhhccCCCeEEe
Q 015289 270 DWEGLGHVSHIAKDKFGVSVAA 291 (409)
Q Consensus 270 d~~~~~~l~~~~~~~~~ipIa~ 291 (409)
......++-+.+++..++||..
T Consensus 181 ~P~~v~~lv~alk~~~~~pi~~ 202 (448)
T PRK12331 181 TPYVAYELVKRIKEAVTVPLEV 202 (448)
T ss_pred CHHHHHHHHHHHHHhcCCeEEE
Confidence 5555555555555555666654
No 305
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=53.29 E-value=2.3e+02 Score=27.69 Aligned_cols=156 Identities=16% Similarity=0.106 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecC--CCh-----hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVG--KNL-----KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG--~~~-----~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (409)
++++..+.++.+.+.|++.+=+--+ .++ +.=.+.+++|++..|++.+.+=........+ .++.+.+.+..
T Consensus 92 ~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e---~l~~l~~aG~d 168 (302)
T TIGR00510 92 DPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIA---ALDILLDAPPD 168 (302)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHH---HHHHHHHcCch
Confidence 5778888888888999998865432 122 2235567888877787776653321111122 33333332211
Q ss_pred -----C----ceeecCCCCCCHHHHHHhHHHhhc-------cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe----CCC
Q 015289 259 -----P----VLFEQPVHRDDWEGLGHVSHIAKD-------KFGVSVAADESCRSLDDVKKIVKGNLADVINI----KLA 318 (409)
Q Consensus 259 -----~----~~iEeP~~~~d~~~~~~l~~~~~~-------~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~----k~~ 318 (409)
+ ..+..=-+..+++...++-+.+++ .+++=|..||+.....+..+.++.-.+|.+.+ .|+
T Consensus 169 v~~hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~igqYl~p~ 248 (302)
T TIGR00510 169 VYNHNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQYLRPS 248 (302)
T ss_pred hhcccccchHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEECCCCHHHHHHHHHHHHhcCCCEEEeecccCCC
Confidence 0 011111122333332222221222 45666777888888877777776666777642 232
Q ss_pred CCc--------HHHHHHHHHHHHHcCCcEEEccC
Q 015289 319 KVG--------VLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 319 ~~G--------i~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
+-. ..+.-....+|.+.|...+.++.
T Consensus 249 ~~~~~v~~~~~p~~f~~~~~~a~~~gf~~v~~~p 282 (302)
T TIGR00510 249 RRHLPVKRYVSPEEFDYYRSVALEMGFLHAACGP 282 (302)
T ss_pred CCCCccccCCCHHHHHHHHHHHHHcCChheEecc
Confidence 211 22345667888889988777664
No 306
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=53.15 E-value=2e+02 Score=27.11 Aligned_cols=148 Identities=9% Similarity=0.088 Sum_probs=83.4
Q ss_pred HHHHHHHHHHcCCCeEEEe-cC---CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHH-HHhCCCCCceeec
Q 015289 190 AAELASKYRKQGFTTLKLK-VG---KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK-LYEMGVTPVLFEQ 264 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiK-vG---~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~-L~~~~l~~~~iEe 264 (409)
..+.++.+.++|++.+-+- +. ..-..+.+.++.+.+. .++.+.++. +--+.+++.+++.. .+..-+.-..+|+
T Consensus 32 p~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~-~~~pv~~gG-Gi~s~~d~~~l~~~G~~~vvigs~~~~~ 109 (258)
T PRK01033 32 PINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASE-CFMPLCYGG-GIKTLEQAKKIFSLGVEKVSINTAALED 109 (258)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHh-CCCCEEECC-CCCCHHHHHHHHHCCCCEEEEChHHhcC
Confidence 3556777888998777642 32 1224567778777775 356777776 44567776666532 1111111123444
Q ss_pred CCCCCCHHHHHHhHHHhhccCCCeEEeC------------------CCCCCHHHHHHHH-HcCCCCEEEeCCCCCc-HH-
Q 015289 265 PVHRDDWEGLGHVSHIAKDKFGVSVAAD------------------ESCRSLDDVKKIV-KGNLADVINIKLAKVG-VL- 323 (409)
Q Consensus 265 P~~~~d~~~~~~l~~~~~~~~~ipIa~d------------------Es~~~~~~~~~~i-~~~a~div~~k~~~~G-i~- 323 (409)
| +-++++.+.+. ...+.++.| .+-.++.++.+.+ +.++-.++..+..+.| ..
T Consensus 110 ~------~~~~~~~~~~~-~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G 182 (258)
T PRK01033 110 P------DLITEAAERFG-SQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKG 182 (258)
T ss_pred H------HHHHHHHHHhC-CCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCC
Confidence 3 44555554332 112566666 1233455654444 5565556777777766 33
Q ss_pred -HHHHHHHHHHHcCCcEEEccCCc
Q 015289 324 -GALEIIEVVRASGLNLMIGGMVE 346 (409)
Q Consensus 324 -~~~~i~~~A~~~gi~~~~~~~~e 346 (409)
..-.+.++++..++++..++-+.
T Consensus 183 ~d~~~i~~~~~~~~ipvIasGGv~ 206 (258)
T PRK01033 183 YDLELLKSFRNALKIPLIALGGAG 206 (258)
T ss_pred CCHHHHHHHHhhCCCCEEEeCCCC
Confidence 23445677778899998877543
No 307
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=53.00 E-value=2e+02 Score=27.48 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHcCCcEEEccC
Q 015289 322 VLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 322 i~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
....++.++.++++|+++..|.+
T Consensus 157 ~~~~~~ai~~l~~~Gi~v~~~~i 179 (296)
T TIGR00433 157 YDDRVDTLENAKKAGLKVCSGGI 179 (296)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE
Confidence 56677888899999999865443
No 308
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=52.59 E-value=42 Score=31.95 Aligned_cols=93 Identities=18% Similarity=0.186 Sum_probs=62.5
Q ss_pred HHHHHHHHhCCCCC--ceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHH
Q 015289 246 VEVLEKLYEMGVTP--VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL 323 (409)
Q Consensus 246 ~~~~~~L~~~~l~~--~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~ 323 (409)
.++++..++.|..- ..-|+.+-...++.+..+++ .+++||-.-.-+.++.++.+....| +|.|.+=..-++-.
T Consensus 71 ~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~----~~~~PvL~KDFIid~~QI~eA~~~G-ADaVLLI~~~L~~~ 145 (254)
T PF00218_consen 71 AEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRK----AVDLPVLRKDFIIDPYQIYEARAAG-ADAVLLIAAILSDD 145 (254)
T ss_dssp HHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHH----HSSS-EEEES---SHHHHHHHHHTT--SEEEEEGGGSGHH
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHH----HhCCCcccccCCCCHHHHHHHHHcC-CCEeehhHHhCCHH
Confidence 34666677665321 23466666566677777654 5789999999999999999988888 49988866666656
Q ss_pred HHHHHHHHHHHcCCcEEEcc
Q 015289 324 GALEIIEVVRASGLNLMIGG 343 (409)
Q Consensus 324 ~~~~i~~~A~~~gi~~~~~~ 343 (409)
...+++.+|+..|+.+.+-.
T Consensus 146 ~l~~l~~~a~~lGle~lVEV 165 (254)
T PF00218_consen 146 QLEELLELAHSLGLEALVEV 165 (254)
T ss_dssp HHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEE
Confidence 67789999999999987533
No 309
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=52.51 E-value=2.5e+02 Score=28.01 Aligned_cols=158 Identities=22% Similarity=0.258 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeec
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 264 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEe 264 (409)
.+.++-.+.++.+.+.|++.+-+-+..--+.|.+.++.+++..++..+..=+ +.+.++ ++...+.++....+--
T Consensus 20 ~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~i~~~~--r~~~~d----i~~a~~~g~~~i~i~~ 93 (365)
T TIGR02660 20 FTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAIVALGLPARLMAWC--RARDAD----IEAAARCGVDAVHISI 93 (365)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHcCCCcEEEEEc--CCCHHH----HHHHHcCCcCEEEEEE
Confidence 3567777778888888998887744322246678888888776655554322 223333 3444455544234444
Q ss_pred CCCCC------------CHHHHHHhHHHhhccCCCeEEe---CCCCCCHHHHHHH----HHcCCCCEEEeCCCCCc---H
Q 015289 265 PVHRD------------DWEGLGHVSHIAKDKFGVSVAA---DESCRSLDDVKKI----VKGNLADVINIKLAKVG---V 322 (409)
Q Consensus 265 P~~~~------------d~~~~~~l~~~~~~~~~ipIa~---dEs~~~~~~~~~~----i~~~a~div~~k~~~~G---i 322 (409)
|+++. .++.+.+..+.++ +.+..+.. |.+-.++..+.++ .+.| +|.+++.=+ +| .
T Consensus 94 ~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak-~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~G-a~~i~l~DT-~G~~~P 170 (365)
T TIGR02660 94 PVSDLQIEAKLRKDRAWVLERLARLVSFAR-DRGLFVSVGGEDASRADPDFLVELAEVAAEAG-ADRFRFADT-VGILDP 170 (365)
T ss_pred ccCHHHHHHHhCcCHHHHHHHHHHHHHHHH-hCCCEEEEeecCCCCCCHHHHHHHHHHHHHcC-cCEEEEccc-CCCCCH
Confidence 55421 1222222222222 23444443 2334445544433 3445 566655433 24 3
Q ss_pred HHHHHHH-HHHHHcCCcEEEccCCchHHHH
Q 015289 323 LGALEII-EVVRASGLNLMIGGMVETRLAM 351 (409)
Q Consensus 323 ~~~~~i~-~~A~~~gi~~~~~~~~es~i~~ 351 (409)
.+..+++ .+.+..++++.+|+....+++.
T Consensus 171 ~~v~~lv~~l~~~~~v~l~~H~HNd~GlA~ 200 (365)
T TIGR02660 171 FSTYELVRALRQAVDLPLEMHAHNDLGMAT 200 (365)
T ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCChHH
Confidence 3444444 4455568888888865545444
No 310
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=52.41 E-value=2.7e+02 Score=28.50 Aligned_cols=177 Identities=15% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCeEEEecCCChh--------HHHHHHHHHHhhCCCcEEEEeCCC-------CCCHHHHHHHHHHH
Q 015289 188 AEAAELASKYRKQGFTTLKLKVGKNLK--------EDIEVLRAIRAVHPDSSFILDANE-------GYKPQEAVEVLEKL 252 (409)
Q Consensus 188 ~~~~~~~~~~~~~Gf~~~KiKvG~~~~--------~d~~~l~avr~~~~~~~l~vDaN~-------~w~~~~A~~~~~~L 252 (409)
+++...++.+.+-||..+.+=-|...+ .-++|++++|+..++.+|-.=..+ .|+-+-.-.|+++.
T Consensus 28 ~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~ka 107 (472)
T COG5016 28 EDMLPIAEALDKVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVEKA 107 (472)
T ss_pred HhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHHHHH
Q ss_pred HhCCCCCceeecCCC-CCCHHHHHHhHHHhhccCCCeEEeCCC-CCCHHHH----HHHHHcCCCCEEEeCCCCCc-HHHH
Q 015289 253 YEMGVTPVLFEQPVH-RDDWEGLGHVSHIAKDKFGVSVAADES-CRSLDDV----KKIVKGNLADVINIKLAKVG-VLGA 325 (409)
Q Consensus 253 ~~~~l~~~~iEeP~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs-~~~~~~~----~~~i~~~a~div~~k~~~~G-i~~~ 325 (409)
.+.|+.++=|=+-+. ..|+..--+-.+....+...-|+..=| +++.+-+ +++.+.+ +|.+.+|-+- | +++-
T Consensus 108 ~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g-~DSIciKDma-GlltP~ 185 (472)
T COG5016 108 AENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMG-VDSICIKDMA-GLLTPY 185 (472)
T ss_pred HhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcC-CCEEEeeccc-ccCChH
Q ss_pred HH---HHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceec
Q 015289 326 LE---IIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 368 (409)
Q Consensus 326 ~~---i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e 368 (409)
.. +-.+=+..++++.+|| ...-|++-+.+++|.-.....+|
T Consensus 186 ~ayelVk~iK~~~~~pv~lHt--H~TsG~a~m~ylkAvEAGvD~iD 229 (472)
T COG5016 186 EAYELVKAIKKELPVPVELHT--HATSGMAEMTYLKAVEAGVDGID 229 (472)
T ss_pred HHHHHHHHHHHhcCCeeEEec--ccccchHHHHHHHHHHhCcchhh
No 311
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=52.19 E-value=2.1e+02 Score=27.41 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=0.0
Q ss_pred eCCCC----CCHHHHHHHHHHHHhCCCCCceeec---------CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHH
Q 015289 235 DANEG----YKPQEAVEVLEKLYEMGVTPVLFEQ---------PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDV 301 (409)
Q Consensus 235 DaN~~----w~~~~A~~~~~~L~~~~l~~~~iEe---------P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~ 301 (409)
|..|. ++.++-+++++.|.+.|+. .||= |--.+.-+-.+.+.+ ..+..+.. -+.+..++
T Consensus 8 DG~Q~~~~~~s~e~K~~i~~~L~~~Gv~--~IEvGs~~~~~~~p~~~d~~~~~~~l~~----~~~~~~~~--~~~~~~dv 79 (274)
T cd07938 8 DGLQNEKTFIPTEDKIELIDALSAAGLR--RIEVTSFVSPKWVPQMADAEEVLAGLPR----RPGVRYSA--LVPNLRGA 79 (274)
T ss_pred CCCcCCCCCcCHHHHHHHHHHHHHcCCC--EEEeCCCCCcccccccCCHHHHHhhccc----CCCCEEEE--ECCCHHHH
Q ss_pred HHHHHcCCCCEEEeCCCCC-------------c-HHHHHHHHHHHHHcCCcE------EEccCCchHHHHHHHHHHH
Q 015289 302 KKIVKGNLADVINIKLAKV-------------G-VLGALEIIEVVRASGLNL------MIGGMVETRLAMGFAGHLS 358 (409)
Q Consensus 302 ~~~i~~~a~div~~k~~~~-------------G-i~~~~~i~~~A~~~gi~~------~~~~~~es~i~~~~~~hla 358 (409)
++.++.+ +|.+.+=..-. - +..+.+.+++|+++|+.+ ..++..++.........++
T Consensus 80 ~~A~~~g-~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~ 155 (274)
T cd07938 80 ERALAAG-VDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVA 155 (274)
T ss_pred HHHHHcC-cCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHH
No 312
>PRK05927 hypothetical protein; Provisional
Probab=52.03 E-value=2.1e+02 Score=28.53 Aligned_cols=129 Identities=17% Similarity=0.182 Sum_probs=73.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEecCCChhHH----HHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCC
Q 015289 184 IVSPAEAAELASKYRKQGFTTLKLKVGKNLKED----IEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTP 259 (409)
Q Consensus 184 ~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d----~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~ 259 (409)
..+++++.+.++++.+.|++.+=+--|.+++.+ .+.++.|++..|++.+- +|++.+...+. ...|+.
T Consensus 75 ~ls~eei~~~a~~~~~~G~~~i~i~gG~~p~~~~e~~~~~i~~ik~~~p~l~~~-----~~s~~ei~~~~---~~~G~~- 145 (350)
T PRK05927 75 LLSFDEFRSLMQRYVSAGVKTVLLQGGVHPQLGIDYLEELVRITVKEFPSLHPH-----FFSAVEIAHAA---QVSGIS- 145 (350)
T ss_pred ccCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCHHHHHHHHHHHHHHCCCCccc-----CCCHHHHHHHH---HhcCCC-
Confidence 347889999999999999999988655444433 35567777777766554 77776633232 233431
Q ss_pred ceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcE
Q 015289 260 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNL 339 (409)
Q Consensus 260 ~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~ 339 (409)
..+.+++|++ .|+-=..|= +.+-+.+.+. ++ +-+.+....++++++..|++.|+++
T Consensus 146 ----------~~e~l~~Lk~-----aGl~~l~g~---~~Et~~~~~~----~~--~~p~k~~~~~rl~~i~~A~~lGi~~ 201 (350)
T PRK05927 146 ----------TEQALERLWD-----AGQRTIPGG---GAEILSERVR----KI--ISPKKMGPDGWIQFHKLAHRLGFRS 201 (350)
T ss_pred ----------HHHHHHHHHH-----cCcccCCCC---CchhCCHHHh----hc--cCCCCCCHHHHHHHHHHHHHcCCCc
Confidence 1233555543 233100110 1221222221 11 1233433478999999999999998
Q ss_pred EEccCC
Q 015289 340 MIGGMV 345 (409)
Q Consensus 340 ~~~~~~ 345 (409)
..+.++
T Consensus 202 ~sg~l~ 207 (350)
T PRK05927 202 TATMMF 207 (350)
T ss_pred CceeEE
Confidence 655544
No 313
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=51.66 E-value=1.2e+02 Score=29.13 Aligned_cols=101 Identities=21% Similarity=0.237 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHHHH-HhCCCCCceeec--C-CCCCCHHHHHHhHHHhh--cc-CCCeEEeCCCCCCHHHHHHHHHcCCCC
Q 015289 239 GYKPQEAVEVLEKL-YEMGVTPVLFEQ--P-VHRDDWEGLGHVSHIAK--DK-FGVSVAADESCRSLDDVKKIVKGNLAD 311 (409)
Q Consensus 239 ~w~~~~A~~~~~~L-~~~~l~~~~iEe--P-~~~~d~~~~~~l~~~~~--~~-~~ipIa~dEs~~~~~~~~~~i~~~a~d 311 (409)
.++.++=+++++.| ++.|+. .||= | .++++.+..+++++... +. .++.+.. -+.+..++..+.+.+ ++
T Consensus 15 ~~s~e~K~~i~~~L~~~~Gv~--~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a--~~~~~~~~~~A~~~g-~~ 89 (280)
T cd07945 15 SFSPSEKLNIAKILLQELKVD--RIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLG--FVDGDKSVDWIKSAG-AK 89 (280)
T ss_pred ccCHHHHHHHHHHHHHHhCCC--EEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEE--ecCcHHHHHHHHHCC-CC
Confidence 47889989999996 888986 8998 6 66767677777654210 00 0233331 134456788888775 46
Q ss_pred EEEeCC-----------CCC--c-HHHHHHHHHHHHHcCCcEEEccC
Q 015289 312 VINIKL-----------AKV--G-VLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 312 iv~~k~-----------~~~--G-i~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
.+++=. .+. - +....+++.+|+++|+.+..+-+
T Consensus 90 ~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~ 136 (280)
T cd07945 90 VLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLE 136 (280)
T ss_pred EEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEE
Confidence 655432 111 1 34456789999999999876554
No 314
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=51.55 E-value=4.6e+02 Score=30.72 Aligned_cols=151 Identities=9% Similarity=0.102 Sum_probs=94.2
Q ss_pred HHHHH-HHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhhCCCc--EE--E---EeCCC-CCCHHHHHHHHHHHHhCC
Q 015289 187 PAEAA-ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDS--SF--I---LDANE-GYKPQEAVEVLEKLYEMG 256 (409)
Q Consensus 187 ~~~~~-~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~~~~~--~l--~---vDaN~-~w~~~~A~~~~~~L~~~~ 256 (409)
|+++. ..++...+.|...|.+-=. .+++.-..-++++++.|..+ .| . +|.+. .|+.+...++++.+.+.|
T Consensus 623 pd~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~G 702 (1143)
T TIGR01235 623 PDNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAG 702 (1143)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcC
Confidence 45554 4566778899999997543 34444444567777775422 33 2 35554 588999999999999998
Q ss_pred CCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCC---CHHHHHHHHHcCCCCEEEeCCCCCc-HH---HHHHHH
Q 015289 257 VTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCR---SLDDVKKIVKGNLADVINIKLAKVG-VL---GALEII 329 (409)
Q Consensus 257 l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~---~~~~~~~~i~~~a~div~~k~~~~G-i~---~~~~i~ 329 (409)
.+...|-+-.---......+|-+.++++.++||...=+.. ........+++| +|++..-++-+| .+ .+..++
T Consensus 703 ad~I~ikDt~Gll~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~Gla~an~laA~eaG-ad~vD~ai~gl~G~ts~p~~e~~v 781 (1143)
T TIGR01235 703 AHILGIKDMAGLLKPAAAKLLIKALREKTDLPIHFHTHDTSGIAVASMLAAVEAG-VDVVDVAVDSMSGLTSQPSLGAIV 781 (1143)
T ss_pred CCEEEECCCcCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCCcHHHHHHHHHHhC-CCEEEecchhhcCCCCCHhHHHHH
Confidence 8767888887766666677766666667789997633222 223345566676 688655444332 22 233444
Q ss_pred HHHHHcCCc
Q 015289 330 EVVRASGLN 338 (409)
Q Consensus 330 ~~A~~~gi~ 338 (409)
...+..|+.
T Consensus 782 ~~L~~~~~~ 790 (1143)
T TIGR01235 782 AALEGSERD 790 (1143)
T ss_pred HHHHhCCCC
Confidence 444444443
No 315
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=51.36 E-value=2e+02 Score=26.47 Aligned_cols=120 Identities=15% Similarity=0.104 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEec--CC-ChhHHHHHHHHHHhh--CCCcEEEEeCCCC-------CCHHHHHHHHHHHH
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKV--GK-NLKEDIEVLRAIRAV--HPDSSFILDANEG-------YKPQEAVEVLEKLY 253 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKv--G~-~~~~d~~~l~avr~~--~~~~~l~vDaN~~-------w~~~~A~~~~~~L~ 253 (409)
+......+++++.+.|-..+.+-+ +. +.++-.+.++++++. ..++++++|..-. .+.++..+.++...
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~ 153 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGA 153 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHH
Confidence 444455567778889999886554 42 222333455666653 3577888865321 23444333355566
Q ss_pred hCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEe--CCCCCCHHH----HHHHHHcCCCCEE
Q 015289 254 EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA--DESCRSLDD----VKKIVKGNLADVI 313 (409)
Q Consensus 254 ~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~--dEs~~~~~~----~~~~i~~~a~div 313 (409)
+.+.. ||--+.. .+++.++++.+ ..++||.. |....+..+ +.++++.|+ +.+
T Consensus 154 ~~GaD--~Ik~~~~-~~~~~~~~i~~----~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga-~gv 211 (235)
T cd00958 154 ELGAD--IVKTKYT-GDAESFKEVVE----GCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGA-AGV 211 (235)
T ss_pred HHCCC--EEEecCC-CCHHHHHHHHh----cCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCC-cEE
Confidence 66654 6655543 36788888764 45677765 334566655 666777775 444
No 316
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=51.16 E-value=2.2e+02 Score=26.94 Aligned_cols=175 Identities=17% Similarity=0.130 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEE--eCCCCCCHHHHHHHHHHHHhCCCCCceee
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFIL--DANEGYKPQEAVEVLEKLYEMGVTPVLFE 263 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~v--DaN~~w~~~~A~~~~~~L~~~~l~~~~iE 263 (409)
+.++..+.++.+.+.|+..+-+-....-+.|.+.++.+++..++..+.. ++| .......++.....++....+-
T Consensus 18 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~~~~~~~~~l~r~~----~~~v~~a~~~~~~~~~~~i~i~ 93 (268)
T cd07940 18 TPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIAREVLNAEICGLARAV----KKDIDAAAEALKPAKVDRIHTF 93 (268)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEEEccCC----HhhHHHHHHhCCCCCCCEEEEE
Confidence 6677788888888999998887432212467889999988766666553 333 2221122222211113322333
Q ss_pred cCCCC------------CCHHHHHHhHHHhhccCCCeEEeC---CCCCCHHHHH----HHHHcCCCCEEEeCCCC-Cc-H
Q 015289 264 QPVHR------------DDWEGLGHVSHIAKDKFGVSVAAD---ESCRSLDDVK----KIVKGNLADVINIKLAK-VG-V 322 (409)
Q Consensus 264 eP~~~------------~d~~~~~~l~~~~~~~~~ipIa~d---Es~~~~~~~~----~~i~~~a~div~~k~~~-~G-i 322 (409)
-|+++ +.++...+..+.++ +.+..|..+ .+-.++..+. ++.+.| +|.+.++=+- .. .
T Consensus 94 ~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~-~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P 171 (268)
T cd07940 94 IATSDIHLKYKLKKTREEVLERAVEAVEYAK-SHGLDVEFSAEDATRTDLDFLIEVVEAAIEAG-ATTINIPDTVGYLTP 171 (268)
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HcCCeEEEeeecCCCCCHHHHHHHHHHHHHcC-CCEEEECCCCCCCCH
Confidence 34431 12333333332222 235555543 3345555543 344455 4666554332 22 4
Q ss_pred HHHHHHHHHHHH-cC---CcEEEccCCchHHHHHHHHHHHccCCCCceec
Q 015289 323 LGALEIIEVVRA-SG---LNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 368 (409)
Q Consensus 323 ~~~~~i~~~A~~-~g---i~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e 368 (409)
.+..++....++ ++ +++.+|+... .|++.+-.++|.-....++|
T Consensus 172 ~~v~~lv~~l~~~~~~~~i~l~~H~Hn~--~GlA~An~laAi~aG~~~iD 219 (268)
T cd07940 172 EEFGELIKKLKENVPNIKVPISVHCHND--LGLAVANSLAAVEAGARQVE 219 (268)
T ss_pred HHHHHHHHHHHHhCCCCceeEEEEecCC--cchHHHHHHHHHHhCCCEEE
Confidence 455565555444 44 7888887543 34444444444333344544
No 317
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=50.03 E-value=2.3e+02 Score=26.86 Aligned_cols=39 Identities=18% Similarity=0.349 Sum_probs=18.3
Q ss_pred HHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 272 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 272 ~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
++++.|.+. +++.++|+.. ++.+..++..+.+ .+|++|+
T Consensus 66 ~gl~~L~~~-~~~~Gl~~~T--ev~d~~~v~~~~e--~vdilqI 104 (250)
T PRK13397 66 QGIRYLHEV-CQEFGLLSVS--EIMSERQLEEAYD--YLDVIQV 104 (250)
T ss_pred HHHHHHHHH-HHHcCCCEEE--eeCCHHHHHHHHh--cCCEEEE
Confidence 344444432 2345555555 4455555544433 2555544
No 318
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=49.98 E-value=1.2e+02 Score=30.19 Aligned_cols=123 Identities=15% Similarity=0.182 Sum_probs=77.2
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhCCCC---------CceeecCCCCCCHHH----------------HHHhHHHh--hc
Q 015289 231 SFILDANEGYKPQEAVEVLEKLYEMGVT---------PVLFEQPVHRDDWEG----------------LGHVSHIA--KD 283 (409)
Q Consensus 231 ~l~vDaN~~w~~~~A~~~~~~L~~~~l~---------~~~iEeP~~~~d~~~----------------~~~l~~~~--~~ 283 (409)
-+++=.-.--+.++|++++++|++.+-. -.|+|-|-....|.| ++.+++.+ ..
T Consensus 56 lvI~GPCSI~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPRT~~gwkGli~DP~ldgs~~i~~GL~~~R~ll~~~~ 135 (353)
T PRK12755 56 LVVVGPCSIHDPEAALEYARRLKALADELSDRLLIVMRVYFEKPRTTVGWKGLINDPHLDGSFDIEEGLRIARKLLLDLV 135 (353)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCcCCcCCCCCccccccccHHHHHHHHHHHHHHHH
Confidence 3445555556899999999998875311 037788865433333 33322211 24
Q ss_pred cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc--HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccC
Q 015289 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG--VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL 361 (409)
Q Consensus 284 ~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G--i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~ 361 (409)
++++|++..=. ++...+.+.+ .+|+.+ +| -++.....++|...++++.+-..+.+.+..+..+-.||..
T Consensus 136 e~Glp~atE~l--d~~~~~y~~D--lvs~~a-----IGARt~esq~hre~aSgl~~PVgfKngt~g~i~~al~Ai~aa~~ 206 (353)
T PRK12755 136 ELGLPLATEAL--DPISPQYLGD--LISWGA-----IGARTTESQTHREMASGLSMPVGFKNGTDGSLKVAINAIRAAAQ 206 (353)
T ss_pred HhCCCEEEEec--CcccHHHHHh--hhhhee-----eccchhcCHHHHHHhcCCCCeeEecCCCCCCHHHHHHHHHHHhC
Confidence 67999998422 2222222222 245543 46 4677888899999999999988878888877777667665
Q ss_pred C
Q 015289 362 G 362 (409)
Q Consensus 362 ~ 362 (409)
|
T Consensus 207 ~ 207 (353)
T PRK12755 207 P 207 (353)
T ss_pred C
Confidence 5
No 319
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=49.59 E-value=2.9e+02 Score=29.20 Aligned_cols=104 Identities=13% Similarity=0.273 Sum_probs=64.6
Q ss_pred eCCC----CCCHHHHHHHHHHHHhCCCCCceeec--CC-CCCCHHHHHHhHHHhhccC-CCeEEeC-----CCC--CCHH
Q 015289 235 DANE----GYKPQEAVEVLEKLYEMGVTPVLFEQ--PV-HRDDWEGLGHVSHIAKDKF-GVSVAAD-----ESC--RSLD 299 (409)
Q Consensus 235 DaN~----~w~~~~A~~~~~~L~~~~l~~~~iEe--P~-~~~d~~~~~~l~~~~~~~~-~ipIa~d-----Es~--~~~~ 299 (409)
|.+| .++.++-+++++.|.+.|+. +||= |. ++.|.+.++++.+ ... +..|+.= +.+ ....
T Consensus 11 DG~Q~~g~~~s~eeKl~Ia~~L~~~GVd--~IE~G~p~~s~~d~~~v~~i~~---~~~~~~~i~~~~r~~r~~~~~~~d~ 85 (526)
T TIGR00977 11 DGAQREGVSFSLEDKIRIAERLDDLGIH--YIEGGWPGANPKDVQFFWQLKE---MNFKNAKIVAFCSTRRPHKKVEEDK 85 (526)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCCCChHHHHHHHHHHH---hCCCCcEEEEEeeecCCCCCCchHH
Confidence 6666 47899999999999999986 9997 54 3567777777653 122 2344431 111 1233
Q ss_pred HHHHHHHcCCCCEEEe-----------CCCCC--c-HHHHHHHHHHHHHcCCcEEEccC
Q 015289 300 DVKKIVKGNLADVINI-----------KLAKV--G-VLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 300 ~~~~~i~~~a~div~~-----------k~~~~--G-i~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
.+..+++.+ .+.+.+ +..+. - +..+.+.+.+|+++|..+....+
T Consensus 86 ~~ea~~~~~-~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e 143 (526)
T TIGR00977 86 MLQALIKAE-TPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAE 143 (526)
T ss_pred HHHHHhcCC-CCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEee
Confidence 456666654 455544 22221 1 23346678999999999876443
No 320
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=49.29 E-value=2.4e+02 Score=26.81 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=73.6
Q ss_pred HHHHHHHHcCCCeEEEecCC----ChhHHHHHHHHHHhh-CC-CcEEEEeCC----C-------CCCH---HHHH-HHHH
Q 015289 192 ELASKYRKQGFTTLKLKVGK----NLKEDIEVLRAIRAV-HP-DSSFILDAN----E-------GYKP---QEAV-EVLE 250 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG~----~~~~d~~~l~avr~~-~~-~~~l~vDaN----~-------~w~~---~~A~-~~~~ 250 (409)
+.++++.+.|...+=+ |. +...+.+.++.+.+. ++ .+.+.+|+. + +|.. -++. ++++
T Consensus 88 e~v~~~l~aGa~rVvI--GS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~ 165 (253)
T TIGR02129 88 TNAQEWLDEGASHVIV--TSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLE 165 (253)
T ss_pred HHHHHHHHcCCCEEEE--CcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHH
Confidence 4466778888865544 52 222246788888887 44 467889985 2 2532 1334 6667
Q ss_pred HHHhCCCCCceeecCC------CCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHc--CCCCEEEeC
Q 015289 251 KLYEMGVTPVLFEQPV------HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG--NLADVINIK 316 (409)
Q Consensus 251 ~L~~~~l~~~~iEeP~------~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~--~a~div~~k 316 (409)
.+++. +. ..+=.=+ .--|++.++++++ ..++||.+.=-+.+.+|+.++-+. +..+++.-+
T Consensus 166 ~~~~~-~~-~il~TdI~rDGtl~G~dlel~~~l~~----~~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~ 233 (253)
T TIGR02129 166 ELSKY-CD-EFLIHAADVEGLCKGIDEELVSKLGE----WSPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGS 233 (253)
T ss_pred HHHhh-CC-EEEEeeecccCccccCCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeee
Confidence 77665 43 2332222 2347888888874 578999998889999999988443 456665443
No 321
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=49.14 E-value=2.1e+02 Score=28.52 Aligned_cols=116 Identities=16% Similarity=0.256 Sum_probs=69.5
Q ss_pred HHHHHHHHcCCCeEEEecCC--------ChhHHHHHHHHHHhh-CC-Cc----EEE----E--------eC---------
Q 015289 192 ELASKYRKQGFTTLKLKVGK--------NLKEDIEVLRAIRAV-HP-DS----SFI----L--------DA--------- 236 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG~--------~~~~d~~~l~avr~~-~~-~~----~l~----v--------Da--------- 236 (409)
+.+.++++.||+.+=+.-.. ++++.++..+.+.+. .+ ++ .|- . |.
T Consensus 87 e~i~~Ai~~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~ 166 (347)
T TIGR01521 87 ATCQRAIQLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMGEAEDGHGFEGVLDH 166 (347)
T ss_pred HHHHHHHHcCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccccccccccCcccccccch
Confidence 34666788899999988763 678888877776652 21 11 111 0 21
Q ss_pred CCCC-CHHHHHHHHHHHHh----------CCCCCceee--cCC-CCCCHHHHHHhHHHhhccC-CCeEEeCCCCCC----
Q 015289 237 NEGY-KPQEAVEVLEKLYE----------MGVTPVLFE--QPV-HRDDWEGLGHVSHIAKDKF-GVSVAADESCRS---- 297 (409)
Q Consensus 237 N~~w-~~~~A~~~~~~L~~----------~~l~~~~iE--eP~-~~~d~~~~~~l~~~~~~~~-~ipIa~dEs~~~---- 297 (409)
...| ++++|.+|+++..- .|+ |-. +|- +.-|++-++++++ .+ ++|+.+-=.-..
T Consensus 167 ~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~---Yk~~~~p~~~~Ld~~rL~eI~~----~v~~vPLVLHGgSG~p~~~ 239 (347)
T TIGR01521 167 SQLLTDPEEAADFVKKTKVDALAVAIGTSHGA---YKFTRKPTGEVLAIQRIEEIHA----RLPDTHLVMHGSSSVPQEW 239 (347)
T ss_pred hhcCCCHHHHHHHHHHHCcCEEehhcccccCC---cCCCCCCChhhcCHHHHHHHHc----cCCCCCEEEeCCCCCchHh
Confidence 1226 48999999986431 232 333 352 1247877888764 56 699886543332
Q ss_pred ------------------HHHHHHHHHcCCCCEEEe
Q 015289 298 ------------------LDDVKKIVKGNLADVINI 315 (409)
Q Consensus 298 ------------------~~~~~~~i~~~a~div~~ 315 (409)
.++++++++.|.+. ||+
T Consensus 240 ~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~K-VNi 274 (347)
T TIGR01521 240 LDIINEYGGEIKETYGVPVEEIVEGIKYGVRK-VNI 274 (347)
T ss_pred hHHHHhhcccccccCCCCHHHHHHHHHCCCee-EEe
Confidence 35677788776433 344
No 322
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=48.27 E-value=3e+02 Score=27.65 Aligned_cols=163 Identities=17% Similarity=0.190 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecC
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP 265 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP 265 (409)
+.++-.+.++.+.+.|+..+-+-.-.--+.|.+.++.+++.+.+..+..-+ +...+. ++.+.+.++...-+--|
T Consensus 24 s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~~~~~~~~i~~~~--r~~~~d----i~~a~~~g~~~i~i~~~ 97 (378)
T PRK11858 24 TNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIAKLGLNASILALN--RAVKSD----IDASIDCGVDAVHIFIA 97 (378)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHHhcCCCeEEEEEc--ccCHHH----HHHHHhCCcCEEEEEEc
Confidence 567777778888888998887643222245667888887765555555432 222322 33344455542223334
Q ss_pred CCCC------------CHHHHHHhHHHhhccCCCeEEe---CCCCCCHHHHHHHH----HcCCCCEEEeCCCCCc---HH
Q 015289 266 VHRD------------DWEGLGHVSHIAKDKFGVSVAA---DESCRSLDDVKKIV----KGNLADVINIKLAKVG---VL 323 (409)
Q Consensus 266 ~~~~------------d~~~~~~l~~~~~~~~~ipIa~---dEs~~~~~~~~~~i----~~~a~div~~k~~~~G---i~ 323 (409)
.+.- .++.+.+..+.++ ..+..|.. |.+-.++..+.+++ +.| +|.+.+.=+- | ..
T Consensus 98 ~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~-~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~G-a~~I~l~DT~-G~~~P~ 174 (378)
T PRK11858 98 TSDIHIKHKLKKTREEVLERMVEAVEYAK-DHGLYVSFSAEDASRTDLDFLIEFAKAAEEAG-ADRVRFCDTV-GILDPF 174 (378)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HCCCeEEEEeccCCCCCHHHHHHHHHHHHhCC-CCEEEEeccC-CCCCHH
Confidence 4321 0122333222222 23555543 34455555554433 345 4555543322 5 33
Q ss_pred HHHHHHH-HHHHcCCcEEEccCCchHHHHHHHHHHHc
Q 015289 324 GALEIIE-VVRASGLNLMIGGMVETRLAMGFAGHLSA 359 (409)
Q Consensus 324 ~~~~i~~-~A~~~gi~~~~~~~~es~i~~~~~~hlaa 359 (409)
+..++.. +.+..++++.+|+....+++ .+-.++|
T Consensus 175 ~v~~lv~~l~~~~~~~l~~H~Hnd~GlA--~AN~laA 209 (378)
T PRK11858 175 TMYELVKELVEAVDIPIEVHCHNDFGMA--TANALAG 209 (378)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCcCHH--HHHHHHH
Confidence 4455544 44455888888886544444 4434444
No 323
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=47.82 E-value=1.8e+02 Score=29.36 Aligned_cols=127 Identities=23% Similarity=0.176 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCCh----hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCc
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGKNL----KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV 260 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~----~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~ 260 (409)
.+++++.++++++.+.|++.+=+--|.++ +.-.+.++.+++.+|++.+. +++..+. .++. ...++
T Consensus 90 Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~y~~~~~~~ik~~~p~~~i~-----a~s~~ei-~~~~--~~~~~--- 158 (370)
T COG1060 90 LSPEEILEEVREAVKRGITEVLIVGGEHPELSLEYYEELFRTIKEEFPDLHIH-----ALSAGEI-LFLA--REGGL--- 158 (370)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchHHHHHHHHHHHHhCcchhhc-----ccCHHHh-HHHH--hccCC---
Confidence 47899999999999999999999988443 34456788888888865543 4555442 2222 11111
Q ss_pred eeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEE
Q 015289 261 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 261 ~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~ 340 (409)
+ --+.|++|..+ ..-.+|...-|-+.. ..++.+. +.|.....++++.+.|.+.||+..
T Consensus 159 ------s--~~E~l~~Lk~a--Gldsmpg~~aeil~e--~vr~~~~----------p~K~~~~~wle~~~~Ah~lGI~~t 216 (370)
T COG1060 159 ------S--YEEVLKRLKEA--GLDSMPGGGAEILSE--EVRKIHC----------PPKKSPEEWLEIHERAHRLGIPTT 216 (370)
T ss_pred ------C--HHHHHHHHHHc--CCCcCcCcceeechH--HHHHhhC----------CCCCCHHHHHHHHHHHHHcCCCcc
Confidence 1 11235565531 122356655454332 3333331 335456789999999999999975
Q ss_pred EccC
Q 015289 341 IGGM 344 (409)
Q Consensus 341 ~~~~ 344 (409)
-..+
T Consensus 217 atml 220 (370)
T COG1060 217 ATML 220 (370)
T ss_pred ceeE
Confidence 4333
No 324
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=47.67 E-value=2.4e+02 Score=26.41 Aligned_cols=162 Identities=20% Similarity=0.218 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHH-HHHHhh---CCCcEEEEeC------CCCCCHHHHHHHHHH-HH
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVL-RAIRAV---HPDSSFILDA------NEGYKPQEAVEVLEK-LY 253 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l-~avr~~---~~~~~l~vDa------N~~w~~~~A~~~~~~-L~ 253 (409)
.+.++..+..+.+.+.|++.|-.--.-.-....+.+ +++++. .+++.|..=. ...++.+...+-+++ |+
T Consensus 14 ~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~~~~~~~~~~~~i~~~~~~sL~ 93 (283)
T PF00248_consen 14 VSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGDGKPEPDYSPDSIRESLERSLE 93 (283)
T ss_dssp STHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESSSSTGGGSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 366777888888999999998865421011222223 355551 2455554333 233455554443332 44
Q ss_pred hCC---CCCceeecCCCCCC--HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHc--CCCCEEEeCCCCCcHHHHH
Q 015289 254 EMG---VTPVLFEQPVHRDD--WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG--NLADVINIKLAKVGVLGAL 326 (409)
Q Consensus 254 ~~~---l~~~~iEeP~~~~d--~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~--~a~div~~k~~~~Gi~~~~ 326 (409)
.++ +.++++-.|-.... -+.++.|.+ ++ +-|.==..|=|.++...+..+... .-++++|+..+-+--..-.
T Consensus 94 ~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~-l~-~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~ 171 (283)
T PF00248_consen 94 RLGTDYIDLLLLHWPDPSEDALEEVWEALEE-LK-KEGKIRHIGVSNFSPEQLEAALKIGSIPPDVVQINYNLLNRREEE 171 (283)
T ss_dssp HHTSSSEEEEEESSSSTTSSHHHHHHHHHHH-HH-HTTSEEEEEEES--HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGH
T ss_pred cccccchhccccccccccccccchhhhhhhh-cc-ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 333 23356666665544 222333332 12 235555556677787788877333 3467777765543112235
Q ss_pred HHHHHHHHcCCcEEEccCCchH
Q 015289 327 EIIEVVRASGLNLMIGGMVETR 348 (409)
Q Consensus 327 ~i~~~A~~~gi~~~~~~~~es~ 348 (409)
.+..+|+++|+.++..+.+..+
T Consensus 172 ~l~~~~~~~gi~v~a~~~l~~G 193 (283)
T PF00248_consen 172 GLLEFCREHGIGVIAYSPLAGG 193 (283)
T ss_dssp HHHHHHHHTT-EEEEESTTGGG
T ss_pred cccccccccccccccccccccC
Confidence 6778999999999987776543
No 325
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=47.43 E-value=2.7e+02 Score=26.77 Aligned_cols=153 Identities=15% Similarity=0.100 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecC----C--ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVG----K--NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG----~--~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (409)
+.+.+...++.+.+.|.+.+=+--. . ..++=.+.++.+.+. ..++.+++=.. . +..+++++++..++.|..
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~a~~a~~~Gad 96 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTATAIAYAQAAEKAGAD 96 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHHHHHHHHHHHHhCCC
Confidence 5667788888899999988865432 1 223334445666665 46678887664 4 889999999999998865
Q ss_pred CceeecCCCC-CCHHHHHHhHHHhhccCCCeEEeCC---CCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHH
Q 015289 259 PVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSVAADE---SCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVR 333 (409)
Q Consensus 259 ~~~iEeP~~~-~d~~~~~~l~~~~~~~~~ipIa~dE---s~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~ 333 (409)
-..+=-|.-. -+.+++.+.-+.+.+.+++||..=. ...+++.+.++.+. .-.++-+|-+ +| +....++.+..
T Consensus 97 ~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~~-~pnivgiKds-~~d~~~~~~~~~~~- 173 (289)
T cd00951 97 GILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAER-CPNLVGFKDG-VGDIELMRRIVAKL- 173 (289)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHhc-CCCEEEEEeC-CCCHHHHHHHHHhc-
Confidence 3344334221 1223332211112235788987532 23456667777642 2367777765 45 65555544322
Q ss_pred HcCCcEEEcc
Q 015289 334 ASGLNLMIGG 343 (409)
Q Consensus 334 ~~gi~~~~~~ 343 (409)
..++.+..|.
T Consensus 174 ~~~~~v~~G~ 183 (289)
T cd00951 174 GDRLLYLGGL 183 (289)
T ss_pred CCCeEEEeCC
Confidence 2355665553
No 326
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=46.84 E-value=2.3e+02 Score=29.77 Aligned_cols=110 Identities=15% Similarity=0.359 Sum_probs=65.6
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCC---HHHHHHhHHHhhccC-CCeEEeCCCCCCHHHHHHHHH
Q 015289 231 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD---WEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVK 306 (409)
Q Consensus 231 ~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d---~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i~ 306 (409)
+|++-|--+-+ .++.+.++.|-+.++.+.-+--+ +.+. ++..+++++ .. +++|..+ .+.+.++.+++++
T Consensus 236 ~l~vgaavg~~-~~~~~r~~~l~~ag~d~i~iD~~-~g~~~~~~~~i~~ik~----~~p~~~vi~g-~v~t~e~a~~a~~ 308 (505)
T PLN02274 236 KLLVGAAIGTR-ESDKERLEHLVKAGVDVVVLDSS-QGDSIYQLEMIKYIKK----TYPELDVIGG-NVVTMYQAQNLIQ 308 (505)
T ss_pred CEEEEEEEcCC-ccHHHHHHHHHHcCCCEEEEeCC-CCCcHHHHHHHHHHHH----hCCCCcEEEe-cCCCHHHHHHHHH
Confidence 45554433333 33456777777777654444332 3222 234555543 33 4777654 4688999999999
Q ss_pred cCCCCEEEeCC-----------CCCc---HHHHHHHHHHHHHcCCcEEEccCCchH
Q 015289 307 GNLADVINIKL-----------AKVG---VLGALEIIEVVRASGLNLMIGGMVETR 348 (409)
Q Consensus 307 ~~a~div~~k~-----------~~~G---i~~~~~i~~~A~~~gi~~~~~~~~es~ 348 (409)
.| +|++.+-. +.+| ++....+.+++++.+++++.-+-+.++
T Consensus 309 aG-aD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~ 363 (505)
T PLN02274 309 AG-VDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNS 363 (505)
T ss_pred cC-cCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCH
Confidence 87 69986531 1123 234456788888999999876654444
No 327
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=46.03 E-value=1.6e+02 Score=28.23 Aligned_cols=138 Identities=20% Similarity=0.264 Sum_probs=77.6
Q ss_pred eeeeeeeecCCC---HHHHHHHHHHHHHcCCCeEEEecC-------CChhHHHHHH----HHHHhhCCCcEEEEeCCCCC
Q 015289 175 TITTDITIPIVS---PAEAAELASKYRKQGFTTLKLKVG-------KNLKEDIEVL----RAIRAVHPDSSFILDANEGY 240 (409)
Q Consensus 175 ~i~~~~~i~~~~---~~~~~~~~~~~~~~Gf~~~KiKvG-------~~~~~d~~~l----~avr~~~~~~~l~vDaN~~w 240 (409)
.+|+..++...+ .++..+.++++. .|...+-+.+. ..+..+.+.. +.+|+. .++.+.+=-...+
T Consensus 96 ~~pvi~Si~~~~~~~~~d~~~~a~~~~-~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~-~~~Pv~vKL~p~~ 173 (295)
T PF01180_consen 96 DIPVIASINGDSEEEIEDWAELAKRLE-AGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREA-VDIPVFVKLSPNF 173 (295)
T ss_dssp CEEEEEEE-TSSSGHHHHHHHHHHHHH-HHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHH-HSSEEEEEE-STS
T ss_pred ceeEEEEeecCCchhHHHHHHHHHHhc-CcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhc-cCCCEEEEecCCC
Confidence 467777777766 677777777655 77888998875 1223333333 333432 3667777665555
Q ss_pred CHHHHHHHHHHHHhCCCCC-----cee-------e--cCCCCCC----------HHHHHHhHHHhhccCC--CeEEeCCC
Q 015289 241 KPQEAVEVLEKLYEMGVTP-----VLF-------E--QPVHRDD----------WEGLGHVSHIAKDKFG--VSVAADES 294 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~-----~~i-------E--eP~~~~d----------~~~~~~l~~~~~~~~~--ipIa~dEs 294 (409)
+..+....+..+.+.++.- -+. | +|+...- .-.++.+++ +++..+ +||.+-=-
T Consensus 174 ~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~-~~~~~~~~i~Iig~GG 252 (295)
T PF01180_consen 174 TDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRE-LRKALGQDIPIIGVGG 252 (295)
T ss_dssp SCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHH-HHHHTTTSSEEEEESS
T ss_pred CchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHH-HHhccccceEEEEeCC
Confidence 4333344445444433210 011 1 1222100 123444443 234556 99999999
Q ss_pred CCCHHHHHHHHHcCCCCEEEeC
Q 015289 295 CRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 295 ~~~~~~~~~~i~~~a~div~~k 316 (409)
+.+.+|+.+++..|| |.||+=
T Consensus 253 I~s~~da~e~l~aGA-~~Vqv~ 273 (295)
T PF01180_consen 253 IHSGEDAIEFLMAGA-SAVQVC 273 (295)
T ss_dssp --SHHHHHHHHHHTE-SEEEES
T ss_pred cCCHHHHHHHHHhCC-CHheec
Confidence 999999999999995 999873
No 328
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.99 E-value=2.2e+02 Score=25.47 Aligned_cols=92 Identities=15% Similarity=0.145 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCC
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV 320 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~ 320 (409)
+.+++.+.++.+-+.|+. |+|=.....+...+-+..+.. ...+-+. .-.+...+++..+++.|+ |++..
T Consensus 22 ~~~~~~~~~~~~~~~Gv~--~vqlr~k~~~~~e~~~~~~~~--~~~~~~g-~gtvl~~d~~~~A~~~gA-dgv~~----- 90 (187)
T PRK07455 22 DLELGLQMAEAVAAGGMR--LIEITWNSDQPAELISQLREK--LPECIIG-TGTILTLEDLEEAIAAGA-QFCFT----- 90 (187)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCCCHHHHHHHHHHh--CCCcEEe-EEEEEcHHHHHHHHHcCC-CEEEC-----
Confidence 789999999999999986 999877655543333322211 1112222 235666688888888874 77632
Q ss_pred c-HHHHHHHHHHHHHcCCcEEEccCC
Q 015289 321 G-VLGALEIIEVVRASGLNLMIGGMV 345 (409)
Q Consensus 321 G-i~~~~~i~~~A~~~gi~~~~~~~~ 345 (409)
| .. ..+...++.+++++++|+..
T Consensus 91 p~~~--~~~~~~~~~~~~~~i~G~~t 114 (187)
T PRK07455 91 PHVD--PELIEAAVAQDIPIIPGALT 114 (187)
T ss_pred CCCC--HHHHHHHHHcCCCEEcCcCC
Confidence 2 11 45667888999999999653
No 329
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=45.98 E-value=1.6e+02 Score=27.89 Aligned_cols=67 Identities=21% Similarity=0.236 Sum_probs=42.4
Q ss_pred HHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEEccC
Q 015289 272 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 272 ~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
+.+..+-+.+++..++||+.| .+++.-++..++.+ .+++|- ++ |...--+++.+++++|.++++-++
T Consensus 62 ~rl~~~v~~l~~~~~~piSID--T~~~~v~~aaL~~g-~~iINd-is--~~~~~~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 62 ERVIPVLRALAGEPDVPISVD--TFNAEVAEAALKAG-ADIIND-VS--GGRGDPEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred HHHHHHHHHHHhcCCCeEEEe--CCcHHHHHHHHHhC-CCEEEe-CC--CCCCChHHHHHHHHcCCCEEEECc
Confidence 334443333444558999886 35666778888887 687753 22 221114667899999999887554
No 330
>PRK07360 FO synthase subunit 2; Reviewed
Probab=45.94 E-value=1.8e+02 Score=29.23 Aligned_cols=71 Identities=28% Similarity=0.368 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCChh-----HHHHHHHHHHhhCCCcEEEE-eC--------CCCCCHHHHHHHHH
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGKNLK-----EDIEVLRAIRAVHPDSSFIL-DA--------NEGYKPQEAVEVLE 250 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~-----~d~~~l~avr~~~~~~~l~v-Da--------N~~w~~~~A~~~~~ 250 (409)
.+++++.+.++++.+.|.+.|-+--|.++. .=.+.++.+++..|++.+-. -+ +.+...+ +.++
T Consensus 91 ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~---e~l~ 167 (371)
T PRK07360 91 LTIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYE---EVLK 167 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHH---HHHH
Confidence 478899999999999999999998663332 33456777777667655431 11 3344443 4567
Q ss_pred HHHhCCCC
Q 015289 251 KLYEMGVT 258 (409)
Q Consensus 251 ~L~~~~l~ 258 (409)
+|++.|+.
T Consensus 168 ~LkeAGld 175 (371)
T PRK07360 168 ALKDAGLD 175 (371)
T ss_pred HHHHcCCC
Confidence 77778875
No 331
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=45.89 E-value=2.5e+02 Score=25.98 Aligned_cols=108 Identities=18% Similarity=0.231 Sum_probs=68.4
Q ss_pred HHHHHHHHcCCCeEEEecC--CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCC------cee-
Q 015289 192 ELASKYRKQGFTTLKLKVG--KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTP------VLF- 262 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG--~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~------~~i- 262 (409)
++++++.+.|-..+-+..- ..++.+++.+-.- ...++.-+|.|+. ++++++.-. +.|+.+ -|-
T Consensus 89 keVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~-~k~~~~l~MAD~S---t~ee~l~a~----~~G~D~IGTTLsGYT~ 160 (229)
T COG3010 89 KEVDALAEAGADIIAFDATDRPRPDGDLEELIAR-IKYPGQLAMADCS---TFEEGLNAH----KLGFDIIGTTLSGYTG 160 (229)
T ss_pred HHHHHHHHCCCcEEEeecccCCCCcchHHHHHHH-hhcCCcEEEeccC---CHHHHHHHH----HcCCcEEecccccccC
Confidence 4455667789988888765 2233355544221 3478999999986 355543221 122210 022
Q ss_pred --ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015289 263 --EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314 (409)
Q Consensus 263 --EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~ 314 (409)
+.|..+ |++-+++|. +.+.++.+--...++...++.++.|+ +.+.
T Consensus 161 ~~~~~~~p-Df~lvk~l~-----~~~~~vIAEGr~~tP~~Ak~a~~~Ga-~aVv 207 (229)
T COG3010 161 YTEKPTEP-DFQLVKQLS-----DAGCRVIAEGRYNTPEQAKKAIEIGA-DAVV 207 (229)
T ss_pred CCCCCCCC-cHHHHHHHH-----hCCCeEEeeCCCCCHHHHHHHHHhCC-eEEE
Confidence 344433 577777776 36899999889999999999999986 4443
No 332
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=45.82 E-value=3.7e+02 Score=27.92 Aligned_cols=143 Identities=11% Similarity=0.217 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHH-----HHcC----CCeEEEecC-CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhC
Q 015289 186 SPAEAAELASKY-----RKQG----FTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEM 255 (409)
Q Consensus 186 ~~~~~~~~~~~~-----~~~G----f~~~KiKvG-~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~ 255 (409)
+.++..+.++.+ ...| -..+=++.. .++++-.+.++++++.. ++.|.||. ++++.+.+-++...+.
T Consensus 103 ~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~dp~~v~~~Vk~V~~~~-dvPLSIDT---~dpevleaAleagad~ 178 (450)
T PRK04165 103 DDEEIDARLKKINNFQFERVGEILKLDMVALRNASGDPEKFAKAVKKVAETT-DLPLILCS---EDPAVLKAALEVVADR 178 (450)
T ss_pred ChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCCCHHHHHHHHHHHHHhc-CCCEEEeC---CCHHHHHHHHHhcCCC
Confidence 445666666666 3334 344444443 24444455566666643 77899996 7888777777766553
Q ss_pred CCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHH----HHHcCCCCEEEeCCCCCcHHHH----HH
Q 015289 256 GVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK----IVKGNLADVINIKLAKVGVLGA----LE 327 (409)
Q Consensus 256 ~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~----~i~~~a~div~~k~~~~Gi~~~----~~ 327 (409)
.-.+. .+..++++.+.++.+ +.+.|+.+.-. +...+.+ +.+.|. +=+.+||.--|+..+ .+
T Consensus 179 ~plI~----Sat~dN~~~m~~la~----~yg~pvVv~~~--dl~~L~~lv~~~~~~GI-~dIILDPg~ggf~ksl~~~~~ 247 (450)
T PRK04165 179 KPLLY----AATKENYEEMAELAK----EYNCPLVVKAP--NLEELKELVEKLQAAGI-KDLVLDPGTENIKETLDDFVQ 247 (450)
T ss_pred CceEE----ecCcchHHHHHHHHH----HcCCcEEEEch--hHHHHHHHHHHHHHcCC-CcEEECCCCchhhhhHHHHHH
Confidence 21111 244577887877664 56788876322 2333333 334565 445699876444333 22
Q ss_pred HHHH-----HHHcCCcEEEcc
Q 015289 328 IIEV-----VRASGLNLMIGG 343 (409)
Q Consensus 328 i~~~-----A~~~gi~~~~~~ 343 (409)
+.++ =+.+|.|+..+.
T Consensus 248 iRr~Al~~~~~~lgyPil~~~ 268 (450)
T PRK04165 248 IRRAAIKKGDRPLGYPIIAFP 268 (450)
T ss_pred HHhhhhhcccccCCCCEEEcc
Confidence 3222 245677776644
No 333
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=45.49 E-value=3e+02 Score=26.82 Aligned_cols=160 Identities=9% Similarity=0.124 Sum_probs=82.3
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcC-CCeEEEecC-C----------ChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHH
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQG-FTTLKLKVG-K----------NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQ 243 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~G-f~~~KiKvG-~----------~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~ 243 (409)
.|+-.++-..++++..+.++...+.| ...+-+.+. + +++.-.+.+++||+.. ++.+.+.-.--++..
T Consensus 93 ~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~-~~Pv~vKlsp~~~~~ 171 (310)
T PRK02506 93 KPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYF-TKPLGVKLPPYFDIV 171 (310)
T ss_pred CCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhc-CCccEEecCCCCCHH
Confidence 34444554556777777777665566 577777765 1 2334445566776642 233444433333433
Q ss_pred HHHHHHHHHHhCCCCC----------cee----ecCCC--C----------CCHHHHHHhHHHhhccC--CCeEEeCCCC
Q 015289 244 EAVEVLEKLYEMGVTP----------VLF----EQPVH--R----------DDWEGLGHVSHIAKDKF--GVSVAADESC 295 (409)
Q Consensus 244 ~A~~~~~~L~~~~l~~----------~~i----EeP~~--~----------~d~~~~~~l~~~~~~~~--~ipIa~dEs~ 295 (409)
+..+.+..+.+.++.- ..+ +.|.. . ...-.++.+.+. +++. .+||.+-=-+
T Consensus 172 ~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~-~~~~~~~ipIig~GGI 250 (310)
T PRK02506 172 HFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAF-YQRLNPSIQIIGTGGV 250 (310)
T ss_pred HHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHH-HHhcCCCCCEEEECCC
Confidence 3223333332222100 011 33332 1 112223333321 2234 5899998889
Q ss_pred CCHHHHHHHHHcCCCCEEEeCCCCC--c---HHHH-HHHHHHHHHcCCc
Q 015289 296 RSLDDVKKIVKGNLADVINIKLAKV--G---VLGA-LEIIEVVRASGLN 338 (409)
Q Consensus 296 ~~~~~~~~~i~~~a~div~~k~~~~--G---i~~~-~~i~~~A~~~gi~ 338 (409)
.+.+|+.+++.+|| +.||+=-+-. | +... ..+.++.+++|+.
T Consensus 251 ~s~~da~e~i~aGA-~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~~ 298 (310)
T PRK02506 251 KTGRDAFEHILCGA-SMVQVGTALHKEGPAVFERLTKELKAIMAEKGYQ 298 (310)
T ss_pred CCHHHHHHHHHcCC-CHHhhhHHHHHhChHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999985 8887643321 3 1121 2345556666654
No 334
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=45.15 E-value=1.2e+02 Score=30.56 Aligned_cols=74 Identities=15% Similarity=0.241 Sum_probs=50.1
Q ss_pred CHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc---HH----HHHHHHHHHHHcCCcEEEc
Q 015289 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG---VL----GALEIIEVVRASGLNLMIG 342 (409)
Q Consensus 270 d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G---i~----~~~~i~~~A~~~gi~~~~~ 342 (409)
.|+.+++|++ .++.||..-+ +.+.++.+++++.| +|.|.+ +..| +. ....+.++++..+++++..
T Consensus 224 ~w~~i~~ir~----~~~~pviiKg-V~~~eda~~a~~~G-~d~I~V--SnhGGrqld~~~~~~~~L~ei~~~~~~~vi~d 295 (361)
T cd04736 224 NWQDLRWLRD----LWPHKLLVKG-IVTAEDAKRCIELG-ADGVIL--SNHGGRQLDDAIAPIEALAEIVAATYKPVLID 295 (361)
T ss_pred CHHHHHHHHH----hCCCCEEEec-CCCHHHHHHHHHCC-cCEEEE--CCCCcCCCcCCccHHHHHHHHHHHhCCeEEEe
Confidence 4666777764 6788998887 68999999999987 688644 2233 11 2334556667778999887
Q ss_pred cCCchHHHH
Q 015289 343 GMVETRLAM 351 (409)
Q Consensus 343 ~~~es~i~~ 351 (409)
+-+.++.-.
T Consensus 296 GGIr~g~Dv 304 (361)
T cd04736 296 SGIRRGSDI 304 (361)
T ss_pred CCCCCHHHH
Confidence 765554433
No 335
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=45.14 E-value=2.5e+02 Score=27.01 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHhCC-----CCCceeecCCC-CCCHHHHHHhHHHhhccC-CCeEEeCCCCCCHHHHHHHHHcCCCCE
Q 015289 240 YKPQEAVEVLEKLYEMG-----VTPVLFEQPVH-RDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLADV 312 (409)
Q Consensus 240 w~~~~A~~~~~~L~~~~-----l~~~~iEeP~~-~~d~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i~~~a~di 312 (409)
|+.++=+++++.|.+.| +. .||=|-. ..|.+..+++.+ +.. ...|..= ...+..++++.++.+ ++.
T Consensus 18 ~~~~~Kv~i~~~L~~~G~~~~~v~--~IE~~s~~~~d~~~v~~~~~---~~~~~~~v~~~-~r~~~~die~A~~~g-~~~ 90 (279)
T cd07947 18 YTVEQIVKIYDYLHELGGGSGVIR--QTEFFLYTEKDREAVEACLD---RGYKFPEVTGW-IRANKEDLKLVKEMG-LKE 90 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCCCccc--eEEecCcChHHHHHHHHHHH---cCCCCCEEEEE-ecCCHHHHHHHHHcC-cCE
Confidence 57777789999999999 86 8887532 234444444432 221 1234443 677889999999876 465
Q ss_pred EEeCCC--------CCc------HHHHHHHHHHHHHcCCcEEEcc
Q 015289 313 INIKLA--------KVG------VLGALEIIEVVRASGLNLMIGG 343 (409)
Q Consensus 313 v~~k~~--------~~G------i~~~~~i~~~A~~~gi~~~~~~ 343 (409)
+.+=.+ +.| +....+++++|+++|+.+..+-
T Consensus 91 v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 91 TGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred EEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 543211 112 2235578999999999877643
No 336
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=45.10 E-value=1.3e+02 Score=31.19 Aligned_cols=96 Identities=15% Similarity=0.196 Sum_probs=62.4
Q ss_pred HHHHHHHHH-HHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-
Q 015289 242 PQEAVEVLE-KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK- 319 (409)
Q Consensus 242 ~~~A~~~~~-~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~- 319 (409)
..+|+..+- .+-+-|- ..++|+|+-..-...++.+ +..-+||-.||.=.+++.+.+.++.+-+.++-+-|+.
T Consensus 164 ~q~al~l~~~~l~~pGd-~v~vE~PtY~~~~~~~~~~-----g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~q 237 (459)
T COG1167 164 AQQALDLLLRLLLDPGD-TVLVEDPTYPGALQALEAL-----GARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQ 237 (459)
T ss_pred HHHHHHHHHHHhCCCCC-EEEEcCCCcHHHHHHHHHc-----CCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCC
Confidence 456666543 4444442 3699999964322222211 1223688889999999999999987666766554443
Q ss_pred --Cc--H--HHHHHHHHHHHHcCCcEEEcc
Q 015289 320 --VG--V--LGALEIIEVVRASGLNLMIGG 343 (409)
Q Consensus 320 --~G--i--~~~~~i~~~A~~~gi~~~~~~ 343 (409)
.| + .+-.+++++|+++++.++=-.
T Consensus 238 NPtG~tms~~rR~~Ll~lA~~~~~~IIEDD 267 (459)
T COG1167 238 NPTGVTMSLERRKALLALAEKYDVLIIEDD 267 (459)
T ss_pred CCCCCccCHHHHHHHHHHHHHcCCeEEeeC
Confidence 37 3 345789999999999886533
No 337
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=43.86 E-value=3.3e+02 Score=26.89 Aligned_cols=124 Identities=17% Similarity=0.199 Sum_probs=79.3
Q ss_pred eeecCCCHHHHHHHHHHHHHc-CCCeEEEecCCC----hhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 015289 180 ITIPIVSPAEAAELASKYRKQ-GFTTLKLKVGKN----LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLY 253 (409)
Q Consensus 180 ~~i~~~~~~~~~~~~~~~~~~-Gf~~~KiKvG~~----~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~ 253 (409)
.+.+..+.+|.+..++-.++. |-+-+|+.|-.+ +..-.+.+++.++. -.++..+.=++. ++. .++++.
T Consensus 142 NTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~--d~~----~a~~l~ 215 (326)
T PRK11840 142 NTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSD--DPI----AAKRLE 215 (326)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCC--CHH----HHHHHH
Confidence 456778888887666555554 678899987521 22345566777775 355555433322 343 445666
Q ss_pred hCCCCCceeec---CCC----CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 254 EMGVTPVLFEQ---PVH----RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 254 ~~~l~~~~iEe---P~~----~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
+++. .-+|- |+- -.|.+.++.+.+ ..++||..|=-+.++.|....++.|+ |.+-+.
T Consensus 216 ~~g~--~avmPl~~pIGsg~gv~~p~~i~~~~e----~~~vpVivdAGIg~~sda~~AmelGa-dgVL~n 278 (326)
T PRK11840 216 DAGA--VAVMPLGAPIGSGLGIQNPYTIRLIVE----GATVPVLVDAGVGTASDAAVAMELGC-DGVLMN 278 (326)
T ss_pred hcCC--EEEeeccccccCCCCCCCHHHHHHHHH----cCCCcEEEeCCCCCHHHHHHHHHcCC-CEEEEc
Confidence 6663 24442 221 125666666653 56899999999999999999999984 777553
No 338
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.58 E-value=2.4e+02 Score=25.22 Aligned_cols=137 Identities=11% Similarity=0.125 Sum_probs=85.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceee
Q 015289 184 IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 263 (409)
Q Consensus 184 ~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE 263 (409)
..++++..+.++.+++.|.+.+.+..-. ....+.++.+++..+. +.+.++.-++.+++. .+ .+.+.. ++=
T Consensus 20 ~~~~~~~~~~~~~~~~~Gv~~vqlr~k~--~~~~e~~~~~~~~~~~--~~~g~gtvl~~d~~~-~A---~~~gAd--gv~ 89 (187)
T PRK07455 20 APDLELGLQMAEAVAAGGMRLIEITWNS--DQPAELISQLREKLPE--CIIGTGTILTLEDLE-EA---IAAGAQ--FCF 89 (187)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCC--CCHHHHHHHHHHhCCC--cEEeEEEEEcHHHHH-HH---HHcCCC--EEE
Confidence 4578888899999999999999998743 2455677777776653 233344556665542 22 234432 554
Q ss_pred cCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCC--cHHHHHHHHHHHHHc-CCcEE
Q 015289 264 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV--GVLGALEIIEVVRAS-GLNLM 340 (409)
Q Consensus 264 eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~--Gi~~~~~i~~~A~~~-gi~~~ 340 (409)
-|-- +.+ ..+.++ ..+++...| +.++.++.+..+.| +|++-+=++.. |+.... .+.+.. +++++
T Consensus 90 ~p~~--~~~-~~~~~~----~~~~~~i~G--~~t~~e~~~A~~~G-adyv~~Fpt~~~~G~~~l~---~~~~~~~~ipvv 156 (187)
T PRK07455 90 TPHV--DPE-LIEAAV----AQDIPIIPG--ALTPTEIVTAWQAG-ASCVKVFPVQAVGGADYIK---SLQGPLGHIPLI 156 (187)
T ss_pred CCCC--CHH-HHHHHH----HcCCCEEcC--cCCHHHHHHHHHCC-CCEEEECcCCcccCHHHHH---HHHhhCCCCcEE
Confidence 4443 222 223332 346677778 89999999998877 69998877653 333333 333445 58887
Q ss_pred Ecc
Q 015289 341 IGG 343 (409)
Q Consensus 341 ~~~ 343 (409)
+-+
T Consensus 157 aiG 159 (187)
T PRK07455 157 PTG 159 (187)
T ss_pred EeC
Confidence 643
No 339
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=43.43 E-value=3.2e+02 Score=27.20 Aligned_cols=122 Identities=11% Similarity=0.094 Sum_probs=76.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhCCCC---------CceeecCC----------------CCCCHHHHHHhHHHhh--cc
Q 015289 232 FILDANEGYKPQEAVEVLEKLYEMGVT---------PVLFEQPV----------------HRDDWEGLGHVSHIAK--DK 284 (409)
Q Consensus 232 l~vDaN~~w~~~~A~~~~~~L~~~~l~---------~~~iEeP~----------------~~~d~~~~~~l~~~~~--~~ 284 (409)
+.+-.-.--+.++|++++++|++..-. -.|+|-|- +.+--+|++..++.+. ..
T Consensus 55 vIvGPCSIhd~~~a~eyA~rL~~l~~~~~d~l~ivmR~y~eKPRTt~gWKGli~DP~ldgsf~i~~GL~~~R~ll~~i~~ 134 (348)
T PRK12756 55 VIIGPCSIHDTDAALDYATRLAALREQYQDRLEIVMRTYFEKPRTVVGWKGLISDPDLDGSYRVNHGLELARKLLLQINE 134 (348)
T ss_pred EEecCCcCCCHHHHHHHHHHHHHHHHHhhccEEEEEEeccccCCCCcccccccCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 344555556899999999888765311 13789984 2222344444333220 36
Q ss_pred CCCeEEeCCCCC-CHHHHHHHHHcCCCCEEEeCCCCCc--HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccC
Q 015289 285 FGVSVAADESCR-SLDDVKKIVKGNLADVINIKLAKVG--VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL 361 (409)
Q Consensus 285 ~~ipIa~dEs~~-~~~~~~~~i~~~a~div~~k~~~~G--i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~ 361 (409)
+++|++..-.-. +++-+.+++.=+ .+| -++..-..++|...++++.+-......+..+..+-.||+.
T Consensus 135 ~GlP~atE~ld~~~~qY~~DliSwg----------aIGARt~esq~hre~ASgls~PVgfKN~t~g~i~~aidAi~aa~~ 204 (348)
T PRK12756 135 LGLPTATEFLDMVTGQYIADLISWG----------AIGARTTESQIHREMASALSCPVGFKNGTDGNTRIAIDAIRAARA 204 (348)
T ss_pred cCCceeehhcccccHHHHHHHHhhh----------hhccccccCHHHHHHHhcCCCceEecCCCCCCHHHHHHHHHHHhC
Confidence 799998743222 222223333211 235 4566678899999999999988888888888888888876
Q ss_pred CC
Q 015289 362 GC 363 (409)
Q Consensus 362 ~~ 363 (409)
|.
T Consensus 205 ~H 206 (348)
T PRK12756 205 SH 206 (348)
T ss_pred CC
Confidence 64
No 340
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=43.11 E-value=3.5e+02 Score=26.98 Aligned_cols=157 Identities=18% Similarity=0.178 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecC
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP 265 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP 265 (409)
+.++-.+.++.+.+.|+..+-+-.-...+.|.+.++.+.+.+++..+..=+ ....++ ++++.+.++....+--|
T Consensus 20 s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~v~~~~--r~~~~d----i~~a~~~g~~~i~i~~~ 93 (363)
T TIGR02090 20 TVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQEGLNAEICSLA--RALKKD----IDKAIDCGVDSIHTFIA 93 (363)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHhcCCCcEEEEEc--ccCHHH----HHHHHHcCcCEEEEEEc
Confidence 567777778888888988887532223357788888888876555554222 222332 34445555542234445
Q ss_pred CCCCC------------HHHHHHhHHHhhccCCCeEEeC-C--CCCCHHHHHH----HHHcCCCCEEEeCCCCCc-H--H
Q 015289 266 VHRDD------------WEGLGHVSHIAKDKFGVSVAAD-E--SCRSLDDVKK----IVKGNLADVINIKLAKVG-V--L 323 (409)
Q Consensus 266 ~~~~d------------~~~~~~l~~~~~~~~~ipIa~d-E--s~~~~~~~~~----~i~~~a~div~~k~~~~G-i--~ 323 (409)
+++-. ++...+..+.++ +.+..+..+ | +-.++..+.+ +.+.| +|.+.+.=+- | . .
T Consensus 94 ~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak-~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g-~~~i~l~DT~-G~~~P~ 170 (363)
T TIGR02090 94 TSPIHLKYKLKKSRDEVLEKAVEAVEYAK-EHGLIVEFSAEDATRTDIDFLIKVFKRAEEAG-ADRINIADTV-GVLTPQ 170 (363)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HcCCEEEEEEeecCCCCHHHHHHHHHHHHhCC-CCEEEEeCCC-CccCHH
Confidence 43211 122222222222 235444433 2 2344444433 34445 4555544332 5 3 3
Q ss_pred HHHHHHHHHH-HcCCcEEEccCCchHHHH
Q 015289 324 GALEIIEVVR-ASGLNLMIGGMVETRLAM 351 (409)
Q Consensus 324 ~~~~i~~~A~-~~gi~~~~~~~~es~i~~ 351 (409)
+..+++...+ ..++++.+|+....+++.
T Consensus 171 ~v~~li~~l~~~~~~~l~~H~Hnd~GlA~ 199 (363)
T TIGR02090 171 KMEELIKKLKENVKLPISVHCHNDFGLAT 199 (363)
T ss_pred HHHHHHHHHhcccCceEEEEecCCCChHH
Confidence 4445544443 456777777765444444
No 341
>PRK07360 FO synthase subunit 2; Reviewed
Probab=42.88 E-value=1.9e+02 Score=28.91 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=21.1
Q ss_pred CCcHHHHHHHHHHHHHcCCcEEEccCC
Q 015289 319 KVGVLGALEIIEVVRASGLNLMIGGMV 345 (409)
Q Consensus 319 ~~Gi~~~~~i~~~A~~~gi~~~~~~~~ 345 (409)
++-...++++++.|++.|+++..+.++
T Consensus 197 ~~s~~~~l~~i~~a~~~Gl~~~sg~i~ 223 (371)
T PRK07360 197 KIKTAEWIEIVKTAHKLGLPTTSTMMY 223 (371)
T ss_pred CCCHHHHHHHHHHHHHcCCCceeeEEe
Confidence 443567899999999999998766554
No 342
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=42.74 E-value=1.7e+02 Score=27.07 Aligned_cols=60 Identities=22% Similarity=0.329 Sum_probs=41.3
Q ss_pred CHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcC
Q 015289 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASG 336 (409)
Q Consensus 270 d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~g 336 (409)
+++.++++++ ..++||..+=.+.+.++++++++.| +|.+.+--.. +...-.+.++++.++
T Consensus 59 ~~~~i~~i~~----~~~~pv~~~GGI~s~~d~~~~l~~G-~~~v~ig~~~--~~~p~~~~~i~~~~~ 118 (243)
T cd04731 59 MLDVVERVAE----EVFIPLTVGGGIRSLEDARRLLRAG-ADKVSINSAA--VENPELIREIAKRFG 118 (243)
T ss_pred cHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcC-CceEEECchh--hhChHHHHHHHHHcC
Confidence 6666777764 5689999999999999999999877 6777654322 222233445555554
No 343
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=42.38 E-value=5e+02 Score=28.52 Aligned_cols=139 Identities=20% Similarity=0.272 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhh----CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCce
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV----HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~----~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (409)
+.+..++++.++.+.|..-+.+-+-. .++.+.++.|++. +-++.|..|-+-.+. -|+..++.++...++|-=
T Consensus 108 D~eatv~Qi~~l~~aGceiVRvtv~~--~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~--~Al~a~~~vdkiRINPGN 183 (733)
T PLN02925 108 DVEATVDQVMRIADKGADIVRITVQG--KKEADACFEIKNTLVQKGYNIPLVADIHFAPS--VALRVAECFDKIRVNPGN 183 (733)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHhHHHHHHHHhhcCCCCCEEEecCCCHH--HHHHHHHhcCCeEECCcc
Confidence 45677889999999999999998853 5777778777773 567899999986655 334444444432222100
Q ss_pred eecC---C-----CCCC-HHHHHH-------hHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHH
Q 015289 262 FEQP---V-----HRDD-WEGLGH-------VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLG 324 (409)
Q Consensus 262 iEeP---~-----~~~d-~~~~~~-------l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~ 324 (409)
|=.+ + ..++ -+++.+ +-+.++ +.++||=.|=+..++.+ ++++... | +--| +..
T Consensus 184 ~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak-~~~~~iRIGvN~GSLs~--ri~~~yG-d------tp~gmVeS 253 (733)
T PLN02925 184 FADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCK-KYGRAMRIGTNHGSLSD--RIMSYYG-D------SPRGMVES 253 (733)
T ss_pred cCCccccccccccchhhhhhhHHHHHHHHHHHHHHHH-HCCCCEEEecCCcCchH--HHHHHhC-C------ChHHHHHH
Confidence 0001 0 0111 111212 222222 56888888888777753 2333211 1 1125 445
Q ss_pred HHHHHHHHHHcCCc
Q 015289 325 ALEIIEVVRASGLN 338 (409)
Q Consensus 325 ~~~i~~~A~~~gi~ 338 (409)
+++-+++|++.|..
T Consensus 254 Ale~~~i~e~~~f~ 267 (733)
T PLN02925 254 AFEFARICRKLDYH 267 (733)
T ss_pred HHHHHHHHHHCCCC
Confidence 66667777776665
No 344
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=42.18 E-value=3.9e+02 Score=27.23 Aligned_cols=141 Identities=14% Similarity=0.273 Sum_probs=73.8
Q ss_pred CchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCH
Q 015289 163 MPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKP 242 (409)
Q Consensus 163 ~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~ 242 (409)
+|+|+...-... .+-..+++++.+.+++..++|-..+-++.|.. .+.++.+++.+-=..+ .|+
T Consensus 121 VPiYqa~~~~~~------~~~~mt~d~~~~~ie~qa~dGVDfmTiH~Gi~----~~~~~~~~~~~R~~gi-------VSR 183 (423)
T TIGR00190 121 VPIYQAAEKVHG------AVEDMDEDDMFRAIEKQAKDGVDFMTIHAGVL----LEYVERLKRSGRITGI-------VSR 183 (423)
T ss_pred ccHHHHHHHhcC------ChhhCCHHHHHHHHHHHHHhCCCEEEEccchh----HHHHHHHHhCCCccCe-------ecC
Confidence 677766543211 22234788899989888899999999999842 2334444442210111 122
Q ss_pred HHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCC--HHHHHHHHHcCCCCEEEeCCCCC
Q 015289 243 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS--LDDVKKIVKGNLADVINIKLAKV 320 (409)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~--~~~~~~~i~~~a~div~~k~~~~ 320 (409)
--++- ...+...+ =|-|+- ++++.+-++.+ ++++-+.+|..+.- ..| +-| -.++
T Consensus 184 GGs~~-~~WM~~~~-----~ENPly-e~fD~lLeI~~----~yDVtlSLGDglRPG~i~D--------A~D-----~aQi 239 (423)
T TIGR00190 184 GGAIL-AAWMLHHH-----KENPLY-KNFDYILEIAK----EYDVTLSLGDGLRPGCIAD--------ATD-----RAQI 239 (423)
T ss_pred cHHHH-HHHHHHcC-----CcCchH-HHHHHHHHHHH----HhCeeeeccCCcCCCcccc--------CCc-----HHHH
Confidence 22211 12222222 155663 34555666553 68889988876541 111 111 1111
Q ss_pred c-HHHHHHHHHHHHHcCCcEEEccC
Q 015289 321 G-VLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 321 G-i~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
- +.-.-+++..|+++|+.+|+-+.
T Consensus 240 ~El~~lgeL~~rA~e~gVQvMVEGP 264 (423)
T TIGR00190 240 SELITLGELVERAREADVQCMVEGP 264 (423)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECC
Confidence 1 22233566777778888876444
No 345
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=41.96 E-value=2.5e+02 Score=28.05 Aligned_cols=130 Identities=15% Similarity=0.248 Sum_probs=79.7
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHh
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE 254 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~ 254 (409)
+.+.+.++..+ +..+.++.+++.|-..+=|.+. ..-+.-++.++.+|+.+|++.++. ..--|.+.|..+++
T Consensus 97 l~V~aavg~~~--~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~via--GNV~T~e~a~~L~~---- 168 (352)
T PF00478_consen 97 LLVAAAVGTRD--DDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIA--GNVVTYEGAKDLID---- 168 (352)
T ss_dssp BCEEEEEESST--CHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEE--EEE-SHHHHHHHHH----
T ss_pred ceEEEEecCCH--HHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEe--cccCCHHHHHHHHH----
Confidence 34444554432 2355666777789888888765 233566778999999999888873 23456776655444
Q ss_pred CCCCCceeec---CCC-----------CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCC
Q 015289 255 MGVTPVLFEQ---PVH-----------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 317 (409)
Q Consensus 255 ~~l~~~~iEe---P~~-----------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~ 317 (409)
.+.. .+== |-+ .-++....+.++. +++.++||.+|=-+.+..|+.+++..|+ |.+++--
T Consensus 169 aGad--~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~-a~~~~v~iIADGGi~~sGDi~KAla~GA-d~VMlG~ 241 (352)
T PF00478_consen 169 AGAD--AVKVGIGPGSICTTREVTGVGVPQLTAVYECAEA-ARDYGVPIIADGGIRTSGDIVKALAAGA-DAVMLGS 241 (352)
T ss_dssp TT-S--EEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHH-HHCTTSEEEEESS-SSHHHHHHHHHTT--SEEEEST
T ss_pred cCCC--EEEEeccCCcccccccccccCCcHHHHHHHHHHH-hhhccCceeecCCcCcccceeeeeeecc-cceeech
Confidence 3321 1110 111 1134445555543 3467999999999999999999999885 9887743
No 346
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=41.60 E-value=88 Score=29.36 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=43.5
Q ss_pred cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEE
Q 015289 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMI 341 (409)
Q Consensus 284 ~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~ 341 (409)
..-+|++.+=-+.+.+|+++++..|+ |=+.+.-.- +...--|.+.|+.+|..|++
T Consensus 72 ~vfiPltVGGGI~s~eD~~~ll~aGA-DKVSINsaA--v~~p~lI~~~a~~FGsQciV 126 (256)
T COG0107 72 QVFIPLTVGGGIRSVEDARKLLRAGA-DKVSINSAA--VKDPELITEAADRFGSQCIV 126 (256)
T ss_pred hceeeeEecCCcCCHHHHHHHHHcCC-CeeeeChhH--hcChHHHHHHHHHhCCceEE
Confidence 56799999999999999999999985 766554332 34444578899999999876
No 347
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=41.28 E-value=1.5e+02 Score=29.55 Aligned_cols=111 Identities=17% Similarity=0.299 Sum_probs=61.5
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhh----CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCC
Q 015289 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV----HPDSSFILDANEGYKPQEAVEVLEKLYEMGV 257 (409)
Q Consensus 182 i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~----~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l 257 (409)
.+..+.+...+++.++.+.|..-+.+-+-. .++.+.++.|++. +-.+.|..|-+-.|... ++.++.++...+
T Consensus 25 t~t~Dv~atv~QI~~L~~aGceivRvavp~--~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lA--l~a~~~v~kiRI 100 (359)
T PF04551_consen 25 TDTRDVEATVAQIKRLEEAGCEIVRVAVPD--MEAAEALKEIKKRLRALGSPIPLVADIHFDYRLA--LEAIEAVDKIRI 100 (359)
T ss_dssp S-TT-HHHHHHHHHHHHHCT-SEEEEEE-S--HHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHH--HHHHHC-SEEEE
T ss_pred CCcccHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHH--HHHHHHhCeEEE
Confidence 344567788899999999999999998843 4666667666653 56799999998777643 344444443322
Q ss_pred CCc-e---eecCCCCCC-HHHHHHhHHHhhccCCCeEEeCCCCCCHH
Q 015289 258 TPV-L---FEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLD 299 (409)
Q Consensus 258 ~~~-~---iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~ 299 (409)
+|= + +++=. .+ .+..+++.+.++ +.++||=.|=+.-|+.
T Consensus 101 NPGNi~~~~~~~~--g~~~~~~~~vv~~ak-e~~ipIRIGvN~GSL~ 144 (359)
T PF04551_consen 101 NPGNIVDEFQEEL--GSIREKVKEVVEAAK-ERGIPIRIGVNSGSLE 144 (359)
T ss_dssp -TTTSS----SS---SS-HHHHHHHHHHHH-HHT-EEEEEEEGGGS-
T ss_pred CCCcccccccccc--cchHHHHHHHHHHHH-HCCCCEEEecccccCc
Confidence 210 1 11111 22 334555544433 4578888776655543
No 348
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=41.26 E-value=3.8e+02 Score=26.85 Aligned_cols=110 Identities=17% Similarity=0.218 Sum_probs=69.9
Q ss_pred CCCeEEEecC-CChhHHHHHHHHHHhh-C-CCcEE------------EEeC-----CCCC-CHHHHHHHHHHHH------
Q 015289 201 GFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDSSF------------ILDA-----NEGY-KPQEAVEVLEKLY------ 253 (409)
Q Consensus 201 Gf~~~KiKvG-~~~~~d~~~l~avr~~-~-~~~~l------------~vDa-----N~~w-~~~~A~~~~~~L~------ 253 (409)
||+.+=+.-. .++++.++..+.+.+. . -++.+ -++. +..| ++++|.+|+++..
T Consensus 135 gftSVMiDgS~lpfeENI~~TrevVe~Ah~~GvsVEaELG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD 214 (357)
T TIGR01520 135 LFSSHMIDLSEEPIEENIEICVKYLKRMAKIKMWLEIEIGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNF 214 (357)
T ss_pred CCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcc
Confidence 3999998876 5678888877777652 1 11111 1111 1236 5999999998762
Q ss_pred h--------CCCCCcee-ecCCCCCCHHHHHHhHHHhhccCCCe-------EEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 254 E--------MGVTPVLF-EQPVHRDDWEGLGHVSHIAKDKFGVS-------VAADESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 254 ~--------~~l~~~~i-EeP~~~~d~~~~~~l~~~~~~~~~ip-------Ia~dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
- .|+ |- ++| .-|++-++++++..++++++| |..|=|=...++++++++.|.+. +|++
T Consensus 215 ~LAvAiGT~HG~---Yk~~~p--~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~kai~~GI~K-INi~ 287 (357)
T TIGR01520 215 SIAAAFGNVHGV---YKPGNV--KLTPDILADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIKEALSYGVVK-MNID 287 (357)
T ss_pred eeeeeeccccCC---cCCCCC--ccCHHHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHHHHHHCCCeE-EEeC
Confidence 1 232 42 443 457888888854333467888 55677777888999999988543 4554
No 349
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=41.10 E-value=1.5e+02 Score=29.75 Aligned_cols=68 Identities=19% Similarity=0.274 Sum_probs=46.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEecCCC-----hhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 015289 184 IVSPAEAAELASKYRKQGFTTLKLKVGKN-----LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (409)
Q Consensus 184 ~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~-----~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (409)
..+++++.+.++.+.+.|.+.|.+--|.+ ++.=.+.++++++.+|++.+ -++ ..+.++. +.|++.|+.
T Consensus 103 ~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~i~i--~~g-~lt~e~l----~~Lk~aGv~ 175 (371)
T PRK09240 103 TLDEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSSVSI--EVQ-PLSEEEY----AELVELGLD 175 (371)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCCcee--ccC-CCCHHHH----HHHHHcCCC
Confidence 34788999999999999999999876632 33445566777776776544 333 4566654 667776653
No 350
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=41.09 E-value=3e+02 Score=26.08 Aligned_cols=98 Identities=18% Similarity=0.264 Sum_probs=0.0
Q ss_pred eCCCCCCHHHHHHHHHHHHhCCCCCceeec------C-----CCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHH
Q 015289 235 DANEGYKPQEAVEVLEKLYEMGVTPVLFEQ------P-----VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 303 (409)
Q Consensus 235 DaN~~w~~~~A~~~~~~L~~~~l~~~~iEe------P-----~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~ 303 (409)
|.....+.+++++.+..+.+.|.. +|.= | -+.++++.+..+-+.++...++||+. --+++.-++.
T Consensus 16 dg~~~~~~~~~~~~a~~~~~~GAd--iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSI--DT~~~~v~e~ 91 (257)
T cd00739 16 DGGRFLSLDKAVAHAEKMIAEGAD--IIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISV--DTFRAEVARA 91 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCC--EEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEE--eCCCHHHHHH
Q ss_pred HHHcCCCCEEE-eCCCCCcHHHHHHHHHHHHHcCCcEEE
Q 015289 304 IVKGNLADVIN-IKLAKVGVLGALEIIEVVRASGLNLMI 341 (409)
Q Consensus 304 ~i~~~a~div~-~k~~~~Gi~~~~~i~~~A~~~gi~~~~ 341 (409)
.++.| ++++| +.....- -+++.+++++|.+++.
T Consensus 92 al~~G-~~iINdisg~~~~----~~~~~l~~~~~~~vV~ 125 (257)
T cd00739 92 ALEAG-ADIINDVSGGSDD----PAMLEVAAEYGAPLVL 125 (257)
T ss_pred HHHhC-CCEEEeCCCCCCC----hHHHHHHHHcCCCEEE
No 351
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=41.07 E-value=3.2e+02 Score=25.87 Aligned_cols=113 Identities=15% Similarity=0.132 Sum_probs=68.3
Q ss_pred HHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee------ec-
Q 015289 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF------EQ- 264 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i------Ee- 264 (409)
+.++++.+.|...+=+.-- .+++..+.++.+++.+-+..+.+-.+. +.+....+++....+ ++.+ .+
T Consensus 106 ~f~~~~~~aGvdgviipDl-p~ee~~~~~~~~~~~gl~~i~lv~P~T--~~eri~~i~~~~~gf---iy~vs~~G~TG~~ 179 (256)
T TIGR00262 106 EFYAKCKEVGVDGVLVADL-PLEESGDLVEAAKKHGVKPIFLVAPNA--DDERLKQIAEKSQGF---VYLVSRAGVTGAR 179 (256)
T ss_pred HHHHHHHHcCCCEEEECCC-ChHHHHHHHHHHHHCCCcEEEEECCCC--CHHHHHHHHHhCCCC---EEEEECCCCCCCc
Confidence 3455666778877766533 334555667778887666555655554 344444444443322 1121 12
Q ss_pred -CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 265 -PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 265 -P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
.+.++..+-+++++ +.++.||+.|=-+.+.++++++.+.| +|++.+
T Consensus 180 ~~~~~~~~~~i~~lr----~~~~~pi~vgfGI~~~e~~~~~~~~G-ADgvVv 226 (256)
T TIGR00262 180 NRAASALNELVKRLK----AYSAKPVLVGFGISKPEQVKQAIDAG-ADGVIV 226 (256)
T ss_pred ccCChhHHHHHHHHH----hhcCCCEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 23333344444444 45688999999999999999999877 488754
No 352
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=41.06 E-value=2.6e+02 Score=24.83 Aligned_cols=154 Identities=19% Similarity=0.269 Sum_probs=82.7
Q ss_pred eecCCCHHHHHHHHHHHHHcCCCeEEEecCCCh--hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 015289 181 TIPIVSPAEAAELASKYRKQGFTTLKLKVGKNL--KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (409)
Q Consensus 181 ~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~--~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (409)
.+...++++..+.++.+.+. .+.+|+ |.++ ..-.+.++.+|+..++..+.+|.--. +.. ..+++.+.+.|..
T Consensus 6 a~d~~~~~~~~~~~~~l~~~-i~~iei--g~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~-~~~--~~~~~~~~~aGad 79 (202)
T cd04726 6 ALDLLDLEEALELAKKVPDG-VDIIEA--GTPLIKSEGMEAVRALREAFPDKIIVADLKTA-DAG--ALEAEMAFKAGAD 79 (202)
T ss_pred EEcCCCHHHHHHHHHHhhhc-CCEEEc--CCHHHHHhCHHHHHHHHHHCCCCEEEEEEEec-ccc--HHHHHHHHhcCCC
Confidence 34455778887877777665 777665 5322 22256788888876676665542111 111 1345667777754
Q ss_pred CceeecCCCCCCHHHHHHhHHHhhccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc-----HHHHHHHHHHH
Q 015289 259 PVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG-----VLGALEIIEVV 332 (409)
Q Consensus 259 ~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~d-Es~~~~~~~~~~i~~~a~div~~k~~~~G-----i~~~~~i~~~A 332 (409)
++==|..... +...++.+..+ +.++++..+ =+..+..+..++... .+|++.+.+...+ .....++.++.
T Consensus 80 --~i~~h~~~~~-~~~~~~i~~~~-~~g~~~~v~~~~~~t~~e~~~~~~~-~~d~v~~~~~~~~~~~~~~~~~~~i~~~~ 154 (202)
T cd04726 80 --IVTVLGAAPL-STIKKAVKAAK-KYGKEVQVDLIGVEDPEKRAKLLKL-GVDIVILHRGIDAQAAGGWWPEDDLKKVK 154 (202)
T ss_pred --EEEEEeeCCH-HHHHHHHHHHH-HcCCeEEEEEeCCCCHHHHHHHHHC-CCCEEEEcCcccccccCCCCCHHHHHHHH
Confidence 4432222111 11222222222 457888765 466778887775654 4799877654321 11122333333
Q ss_pred HHcCCcEEEccCC
Q 015289 333 RASGLNLMIGGMV 345 (409)
Q Consensus 333 ~~~gi~~~~~~~~ 345 (409)
+..++++++.+..
T Consensus 155 ~~~~~~i~~~GGI 167 (202)
T cd04726 155 KLLGVKVAVAGGI 167 (202)
T ss_pred hhcCCCEEEECCc
Confidence 3367888876543
No 353
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=41.03 E-value=3.6e+02 Score=26.47 Aligned_cols=29 Identities=21% Similarity=0.278 Sum_probs=26.3
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 286 GVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 286 ~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
++||.++=-+.+..|+.+++..| +|.+++
T Consensus 255 ~ipIiasGGIr~~~dv~kal~lG-Ad~V~i 283 (326)
T cd02811 255 DLPLIASGGIRNGLDIAKALALG-ADLVGM 283 (326)
T ss_pred CCcEEEECCCCCHHHHHHHHHhC-CCEEEE
Confidence 79999999999999999999998 798876
No 354
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=41.03 E-value=3.2e+02 Score=25.89 Aligned_cols=152 Identities=13% Similarity=0.121 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCC-Ch-h-HHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGK-NL-K-EDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 262 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~-~~-~-~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i 262 (409)
+++.+.+. +.+.|-..+-+-+-+ +. + ..-..+..++. .++.++--.++.+|.+||++.++..++..- ..||
T Consensus 21 s~~~~~~a---i~aSg~~ivTva~rR~~~~~~~~~~~~~~i~~--~~~~~lpNTaG~~ta~eAv~~a~lare~~~-~~~i 94 (248)
T cd04728 21 SPAIMKEA---IEASGAEIVTVALRRVNIGDPGGESFLDLLDK--SGYTLLPNTAGCRTAEEAVRTARLAREALG-TDWI 94 (248)
T ss_pred CHHHHHHH---HHHhCCCEEEEEEEecccCCCCcchHHhhccc--cCCEECCCCCCCCCHHHHHHHHHHHHHHhC-CCeE
Confidence 55555443 345688777776542 11 1 11222333322 356777777889999999999888887632 2376
Q ss_pred ec-----C--CCCCCHHHHHHhHHHhhc-cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe--CCCC--CcHHHHHHHHH
Q 015289 263 EQ-----P--VHRDDWEGLGHVSHIAKD-KFGVSVAADESCRSLDDVKKIVKGNLADVINI--KLAK--VGVLGALEIIE 330 (409)
Q Consensus 263 Ee-----P--~~~~d~~~~~~l~~~~~~-~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~--k~~~--~Gi~~~~~i~~ 330 (409)
-= | +-+|..+.++.-....++ -.-+|++. .++...+++.+.| ++++.+ .+-- .|+...-.+-.
T Consensus 95 KlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~----dd~~~ar~l~~~G-~~~vmPlg~pIGsg~Gi~~~~~I~~ 169 (248)
T cd04728 95 KLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCT----DDPVLAKRLEDAG-CAAVMPLGSPIGSGQGLLNPYNLRI 169 (248)
T ss_pred EEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeC----CCHHHHHHHHHcC-CCEeCCCCcCCCCCCCCCCHHHHHH
Confidence 21 2 223333333322211111 22356766 4666677777775 799876 3222 23422222335
Q ss_pred HHHHcCCcEEEccCCchH
Q 015289 331 VVRASGLNLMIGGMVETR 348 (409)
Q Consensus 331 ~A~~~gi~~~~~~~~es~ 348 (409)
+.+..+++++..+-+.++
T Consensus 170 I~e~~~vpVI~egGI~tp 187 (248)
T cd04728 170 IIERADVPVIVDAGIGTP 187 (248)
T ss_pred HHHhCCCcEEEeCCCCCH
Confidence 555578999887665544
No 355
>PLN02389 biotin synthase
Probab=40.90 E-value=4e+02 Score=26.91 Aligned_cols=144 Identities=15% Similarity=0.253 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEec------CCC--hhHHHHHHHHHHhhCCCcEEEEeCCCCC-CHHHHHHHHHHHHh
Q 015289 184 IVSPAEAAELASKYRKQGFTTLKLKV------GKN--LKEDIEVLRAIRAVHPDSSFILDANEGY-KPQEAVEVLEKLYE 254 (409)
Q Consensus 184 ~~~~~~~~~~~~~~~~~Gf~~~KiKv------G~~--~~~d~~~l~avr~~~~~~~l~vDaN~~w-~~~~A~~~~~~L~~ 254 (409)
..+++++.+.++++.+.|++.|=+-. +.+ .+.=.+.++.+++.+ +. +-++.+. +.++ ++.|++
T Consensus 115 ~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~--l~--i~~s~G~l~~E~----l~~Lke 186 (379)
T PLN02389 115 LMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMG--ME--VCCTLGMLEKEQ----AAQLKE 186 (379)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCC--cE--EEECCCCCCHHH----HHHHHH
Confidence 35889999999999999999876531 111 223334555555433 22 3345444 4444 344555
Q ss_pred CCCC---------CceeecCCCCCCHHHHHHhHHHhhccCCCeEEe------CCCCCCHHHHHHHHHc-C-CCCEEE---
Q 015289 255 MGVT---------PVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA------DESCRSLDDVKKIVKG-N-LADVIN--- 314 (409)
Q Consensus 255 ~~l~---------~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~------dEs~~~~~~~~~~i~~-~-a~div~--- 314 (409)
.|+. ..++.+=++..+++..-+..+.++ +.|++++. +|+..+..+....++. + ..|.+.
T Consensus 187 AGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~-~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~ 265 (379)
T PLN02389 187 AGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVR-EAGISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINA 265 (379)
T ss_pred cCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHH-HcCCeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEeccc
Confidence 5442 112333333445544333222222 34666644 5665555544444432 1 234332
Q ss_pred --eC----CCC---CcHHHHHHHHHHHHHcC
Q 015289 315 --IK----LAK---VGVLGALEIIEVVRASG 336 (409)
Q Consensus 315 --~k----~~~---~Gi~~~~~i~~~A~~~g 336 (409)
|- ... ....+.+|++++++-.-
T Consensus 266 l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~l 296 (379)
T PLN02389 266 LVAVKGTPLEDQKPVEIWEMVRMIATARIVM 296 (379)
T ss_pred ceecCCCcCCCCCCCCHHHHHHHHHHHHHHC
Confidence 11 111 12557788888887654
No 356
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=40.82 E-value=3.8e+02 Score=26.73 Aligned_cols=116 Identities=15% Similarity=0.281 Sum_probs=68.9
Q ss_pred HHHHHHHcCCCeEEEecCC--------ChhHHHHHHHHHHhh-C-CC----cEEE-E-----------eC---------C
Q 015289 193 LASKYRKQGFTTLKLKVGK--------NLKEDIEVLRAIRAV-H-PD----SSFI-L-----------DA---------N 237 (409)
Q Consensus 193 ~~~~~~~~Gf~~~KiKvG~--------~~~~d~~~l~avr~~-~-~~----~~l~-v-----------Da---------N 237 (409)
.+.++++.||+.+=+.... ++++.+++.+.+.+. . -+ ..|- + |. .
T Consensus 90 ~i~~Ai~~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~ 169 (347)
T PRK13399 90 TCQSAIRSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHD 169 (347)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccccccCCcccccccccc
Confidence 4567788999999988662 377888877777653 1 11 1120 0 21 1
Q ss_pred CCC-CHHHHHHHHHHHHh----------CCCCCceee--cCC-CCCCHHHHHHhHHHhhccC-CCeEEeCCCCCC-----
Q 015289 238 EGY-KPQEAVEVLEKLYE----------MGVTPVLFE--QPV-HRDDWEGLGHVSHIAKDKF-GVSVAADESCRS----- 297 (409)
Q Consensus 238 ~~w-~~~~A~~~~~~L~~----------~~l~~~~iE--eP~-~~~d~~~~~~l~~~~~~~~-~ipIa~dEs~~~----- 297 (409)
..| ++++|.+|+++..- .|+ |-. +|- +.-|++-++++++ .+ ++|+.+-=.-..
T Consensus 170 ~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~---Yk~~~~p~~~~L~~drl~eI~~----~v~~vPLVLHGgSGvp~~~~ 242 (347)
T PRK13399 170 QMLTDPDQAVDFVQRTGVDALAIAIGTSHGA---YKFTRKPDGDILAIDRIEEIHA----RLPNTHLVMHGSSSVPQELQ 242 (347)
T ss_pred ccCCCHHHHHHHHHHHCcCEEhhhhccccCC---cCCCCCCChhhccHHHHHHHHh----hcCCCCEEEeCCCCCCHHHH
Confidence 226 49999999987431 232 333 343 1246777888865 56 699886543332
Q ss_pred -----------------HHHHHHHHHcCCCCEEEeC
Q 015289 298 -----------------LDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 298 -----------------~~~~~~~i~~~a~div~~k 316 (409)
.++++++++.|.+ =||++
T Consensus 243 ~~~~~~g~~~~~~~g~~~e~~~kai~~GI~-KINi~ 277 (347)
T PRK13399 243 EIINAYGGKMKETYGVPVEEIQRGIKHGVR-KVNID 277 (347)
T ss_pred HHHHHhcCCccccCCCCHHHHHHHHHCCCe-EEEeC
Confidence 3667777877643 33443
No 357
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=40.67 E-value=2.4e+02 Score=27.78 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHHHHcCCcEEEccC
Q 015289 321 GVLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 321 Gi~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
...++++.++.|+++|+++..+.+
T Consensus 177 ~~~~~~~~i~~a~~~Gi~v~s~~i 200 (343)
T TIGR03551 177 STAEWIEIIKTAHKLGIPTTATIM 200 (343)
T ss_pred CHHHHHHHHHHHHHcCCcccceEE
Confidence 356789999999999999865443
No 358
>PRK10060 RNase II stability modulator; Provisional
Probab=40.65 E-value=2.1e+02 Score=31.08 Aligned_cols=117 Identities=16% Similarity=0.132 Sum_probs=71.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCc--eee--cCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 240 YKPQEAVEVLEKLYEMGVTPV--LFE--QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~--~iE--eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
.+.+-.-.+.+.++++++.+. .|| |....++.+...++.+.++ ..|+.|++|.--.+...+..+.+. -+|++-+
T Consensus 505 ~~~~~~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~l~~L~-~~G~~ialDdfGtg~ssl~~L~~l-~~d~iKi 582 (663)
T PRK10060 505 ADQTIFTALKQALQELNFEYCPIDVELTESCLIENEELALSVIQQFS-QLGAQVHLDDFGTGYSSLSQLARF-PIDAIKL 582 (663)
T ss_pred CCCcHHHHHHHHHHHHCcCcceEEEEECCchhhcCHHHHHHHHHHHH-HCCCEEEEECCCCchhhHHHHHhC-CCCEEEE
Confidence 343333445566677664332 344 3323345555444433343 579999999988888888776665 4899999
Q ss_pred CCCCCc-HH-------HHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCC
Q 015289 316 KLAKVG-VL-------GALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 363 (409)
Q Consensus 316 k~~~~G-i~-------~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~ 363 (409)
|-+.+- +. -...++.+|++.|++++.-+- |+. .-......+++
T Consensus 583 D~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAeGV-Et~----~q~~~l~~~G~ 633 (663)
T PRK10060 583 DQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGV-ETA----KEDAFLTKNGV 633 (663)
T ss_pred CHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEecC-CCH----HHHHHHHHcCC
Confidence 865542 21 134678999999999988653 544 33344444554
No 359
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=40.64 E-value=2.6e+02 Score=25.51 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=32.5
Q ss_pred CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 269 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 269 ~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
.+++.++++++ .+++||..+=-+.+.++++++++.| +|.+.+.
T Consensus 61 ~~~~~i~~i~~----~~~~pv~~~GGI~~~ed~~~~~~~G-a~~vilg 103 (233)
T PRK00748 61 VNLELIEAIVK----AVDIPVQVGGGIRSLETVEALLDAG-VSRVIIG 103 (233)
T ss_pred ccHHHHHHHHH----HCCCCEEEcCCcCCHHHHHHHHHcC-CCEEEEC
Confidence 45666776654 4678999998999999999999887 5666543
No 360
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=40.36 E-value=2.2e+02 Score=26.69 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCCcEEEccC
Q 015289 324 GALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 324 ~~~~i~~~A~~~gi~~~~~~~ 344 (409)
...+++.+|+++|+.+.+..+
T Consensus 134 ~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 134 GLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHhCCEEEEEec
Confidence 345688999999999988664
No 361
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=40.34 E-value=2.8e+02 Score=25.92 Aligned_cols=133 Identities=14% Similarity=0.266 Sum_probs=75.7
Q ss_pred eeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhC-
Q 015289 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEM- 255 (409)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~- 255 (409)
|....+-..+|+...+ .+.+.|...+-+..-.....-.+.++.+|+.|-...|.+..+... +....++..++-.
T Consensus 61 ~~DvHLMv~~P~~~i~---~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~--~~l~~~l~~vD~VL 135 (229)
T PRK09722 61 PLDVHLMVTDPQDYID---QLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPV--ESIKYYIHLLDKIT 135 (229)
T ss_pred CeEEEEEecCHHHHHH---HHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCH--HHHHHHHHhcCEEE
Confidence 3344444457776644 456679999988886311223456788999887888888887644 4444555555421
Q ss_pred --CCCCceeecCCCCCCHHHHHHhHHHhh-ccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 256 --GVTPVLFEQPVHRDDWEGLGHVSHIAK-DKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 256 --~l~~~~iEeP~~~~d~~~~~~l~~~~~-~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
-++|-+=-|++-++-++-.+++++... ....+.|..|=.+. ...+.++.+.| +|++..-
T Consensus 136 vMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aG-ad~~V~G 197 (229)
T PRK09722 136 VMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAG-ADVFIVG 197 (229)
T ss_pred EEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcC-CCEEEEC
Confidence 111123355554444444444443221 12345677776654 55667777776 4777553
No 362
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=39.94 E-value=1.3e+02 Score=24.01 Aligned_cols=106 Identities=22% Similarity=0.329 Sum_probs=69.0
Q ss_pred HHHHHHHHHhhCCCcEE--EEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCC
Q 015289 216 DIEVLRAIRAVHPDSSF--ILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE 293 (409)
Q Consensus 216 d~~~l~avr~~~~~~~l--~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE 293 (409)
-...+.++++..++..+ .+|.+ .+.+.++ .+++++. .+ .|++.+-.- ...++=+....
T Consensus 12 g~~~~~~~~~~~~~~~v~~v~d~~----~~~~~~~---~~~~~~~--~~------~~~~~ll~~-----~~~D~V~I~tp 71 (120)
T PF01408_consen 12 GRRHLRALLRSSPDFEVVAVCDPD----PERAEAF---AEKYGIP--VY------TDLEELLAD-----EDVDAVIIATP 71 (120)
T ss_dssp HHHHHHHHHHTTTTEEEEEEECSS----HHHHHHH---HHHTTSE--EE------SSHHHHHHH-----TTESEEEEESS
T ss_pred HHHHHHHHHhcCCCcEEEEEEeCC----HHHHHHH---HHHhccc--ch------hHHHHHHHh-----hcCCEEEEecC
Confidence 33456677776666654 34554 4444333 4455542 22 234433321 24555555555
Q ss_pred CCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEEc
Q 015289 294 SCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIG 342 (409)
Q Consensus 294 s~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~~ 342 (409)
+-....-+..+++.|. +++.=||.-....++.++.++|+++|..++++
T Consensus 72 ~~~h~~~~~~~l~~g~-~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~Vg 119 (120)
T PF01408_consen 72 PSSHAEIAKKALEAGK-HVLVEKPLALTLEEAEELVEAAKEKGVKVMVG 119 (120)
T ss_dssp GGGHHHHHHHHHHTTS-EEEEESSSSSSHHHHHHHHHHHHHHTSCEEEE
T ss_pred CcchHHHHHHHHHcCC-EEEEEcCCcCCHHHHHHHHHHHHHhCCEEEEe
Confidence 5566677888998885 99988888777899999999999999999875
No 363
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=39.48 E-value=24 Score=33.37 Aligned_cols=61 Identities=16% Similarity=0.372 Sum_probs=36.2
Q ss_pred cCCCeEEeCCCCCCHHHHHHHHH--cCCCCEEEeCCCCCcHH-H--HHHHHHHHHHcCCcEEEccCC
Q 015289 284 KFGVSVAADESCRSLDDVKKIVK--GNLADVINIKLAKVGVL-G--ALEIIEVVRASGLNLMIGGMV 345 (409)
Q Consensus 284 ~~~ipIa~dEs~~~~~~~~~~i~--~~a~div~~k~~~~Gi~-~--~~~i~~~A~~~gi~~~~~~~~ 345 (409)
..|+-...|-. .++..++++++ ...+|++.+--+-.-+. + ..+.+++|++|||.+++|+.+
T Consensus 11 ~~GlT~v~Dkg-lg~~~~~dlLe~ag~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl 76 (244)
T PF02679_consen 11 SRGLTMVIDKG-LGLRYLEDLLESAGDYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTL 76 (244)
T ss_dssp SSS-EEEEESS---HHHHHHHHHHHGGG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHH
T ss_pred CCCcEEEecCC-CCHHHHHHHHHHhhhhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHH
Confidence 56777777766 67777888776 35678763321111122 2 467899999999999998753
No 364
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=39.20 E-value=2.4e+02 Score=28.54 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=49.9
Q ss_pred CHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-----CcHHHHHHHHHHHHHc--CCcEEEc
Q 015289 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-----VGVLGALEIIEVVRAS--GLNLMIG 342 (409)
Q Consensus 270 d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~-----~Gi~~~~~i~~~A~~~--gi~~~~~ 342 (409)
+|+.+++|++ .+++||..-+. .+.+|.+.+++.| +|.|.+.-.- .|+.....+.++++.. .++++..
T Consensus 241 tW~~i~~lr~----~~~~pvivKgV-~~~~dA~~a~~~G-~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~d 314 (383)
T cd03332 241 TWEDLAFLRE----WTDLPIVLKGI-LHPDDARRAVEAG-VDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFD 314 (383)
T ss_pred CHHHHHHHHH----hcCCCEEEecC-CCHHHHHHHHHCC-CCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEe
Confidence 5777787764 57899999866 7889999999987 6887765321 1122223334444444 4888887
Q ss_pred cCCchHHHHHH
Q 015289 343 GMVETRLAMGF 353 (409)
Q Consensus 343 ~~~es~i~~~~ 353 (409)
+-+-++.-...
T Consensus 315 GGIr~G~Dv~K 325 (383)
T cd03332 315 SGVRTGADIMK 325 (383)
T ss_pred CCcCcHHHHHH
Confidence 76554443333
No 365
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=38.72 E-value=2.6e+02 Score=26.44 Aligned_cols=98 Identities=21% Similarity=0.341 Sum_probs=58.6
Q ss_pred eCCCCCCHHHHHHHHHHHHhCCCCCceeec------C----CCCC-CHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHH
Q 015289 235 DANEGYKPQEAVEVLEKLYEMGVTPVLFEQ------P----VHRD-DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 303 (409)
Q Consensus 235 DaN~~w~~~~A~~~~~~L~~~~l~~~~iEe------P----~~~~-d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~ 303 (409)
|.....+.+++++.++.+.+.|.. +|.= | +..+ +++.+..+-+.+++..++||+.| .+++.-++.
T Consensus 15 dg~~~~~~~~~~~~a~~~~~~GA~--iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiD--T~~~~vi~~ 90 (257)
T TIGR01496 15 DGGRFLSVDKAVAHAERMLEEGAD--IIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVD--TYRAEVARA 90 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCC--EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe--CCCHHHHHH
Confidence 343345677777777777766654 5532 1 1111 22223333333444568999986 456777888
Q ss_pred HHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEE
Q 015289 304 IVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMI 341 (409)
Q Consensus 304 ~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~ 341 (409)
.++.| ++++|- ++ |.. .-+++.+++++|.+++.
T Consensus 91 al~~G-~~iINs-is--~~~-~~~~~~l~~~~~~~vV~ 123 (257)
T TIGR01496 91 ALEAG-ADIIND-VS--GGQ-DPAMLEVAAEYGVPLVL 123 (257)
T ss_pred HHHcC-CCEEEE-CC--CCC-CchhHHHHHHcCCcEEE
Confidence 88886 688763 11 221 23567778899999876
No 366
>PRK14863 bifunctional regulator KidO; Provisional
Probab=38.04 E-value=3.7e+02 Score=25.79 Aligned_cols=152 Identities=16% Similarity=0.184 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHH-HHHhhCCCcEEEEeC-CCCCCHHHHHH----HHHHHHhCCCCC
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLR-AIRAVHPDSSFILDA-NEGYKPQEAVE----VLEKLYEMGVTP 259 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~-avr~~~~~~~l~vDa-N~~w~~~~A~~----~~~~L~~~~l~~ 259 (409)
+.++..+.++.+.+.|++.|-.--. .....+.+- +++. .....+.+-. +..++.+...+ -+++|.--.+.+
T Consensus 30 ~~~ea~~~l~~A~~~Gin~~DTA~~--YG~SE~~lG~al~~-~~~~~~~i~tk~~~~~~~~i~~~~e~SL~rLg~d~iDl 106 (292)
T PRK14863 30 PEAEARDILNIAARAGLSVLDASGL--FGRAETVLGQLIPR-PVPFRVTLSTVRADRGPDFVEAEARASLRRMGVERADA 106 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEecchh--hhhHHHHHhhhhcc-CCceEeecccccccccHHHHHHHHHHHHHHhCCCccCe
Confidence 5677788888899999999874321 122222332 2222 1111122111 12234443322 344443222444
Q ss_pred ceeecCCC---CC---CHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcH-HHHHHHHHHH
Q 015289 260 VLFEQPVH---RD---DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGV-LGALEIIEVV 332 (409)
Q Consensus 260 ~~iEeP~~---~~---d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi-~~~~~i~~~A 332 (409)
+++-.|-+ +. -++.+.++.+ .|.==..|=|.++..++..+.+...++++|+..+-+-- .+...+..+|
T Consensus 107 ~~lH~~~~~~~~~~~~~~~~l~~l~~-----~Gkir~iGvSn~~~~~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~ 181 (292)
T PRK14863 107 ILVHSPTELFGPHGAALWERLQALKD-----QGLFAKIGVSAHASDDPVGVARRFKPDILQAPASLLDQRLLADGSLQRI 181 (292)
T ss_pred EEEeCchhhcCcchHHHHHHHHHHHH-----cCCcceEeeeccCHHHHHHHHhcCCCCEEEecCCcccccccccchHHHH
Confidence 56666532 21 1344454442 23333445566787777777776678888887654321 1113578999
Q ss_pred HHcCCcEEEccCC
Q 015289 333 RASGLNLMIGGMV 345 (409)
Q Consensus 333 ~~~gi~~~~~~~~ 345 (409)
+++|+.++..+.+
T Consensus 182 ~~~gi~v~a~spl 194 (292)
T PRK14863 182 AGMGVEVHLRSIF 194 (292)
T ss_pred HhCCCEEEEechh
Confidence 9999998765554
No 367
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=37.81 E-value=2.8e+02 Score=27.50 Aligned_cols=108 Identities=18% Similarity=0.167 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCceeecCCCCC-CHHHHHHhHHHhhccC-CCeEEe-----------CCCCCCHHHHHHHHH
Q 015289 240 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRD-DWEGLGHVSHIAKDKF-GVSVAA-----------DESCRSLDDVKKIVK 306 (409)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~-d~~~~~~l~~~~~~~~-~ipIa~-----------dEs~~~~~~~~~~i~ 306 (409)
++.++.++.++...+.++.-.++---..++ +++.+.++.+..++.. ++.+.. -....+.+.++++.+
T Consensus 79 l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~Lke 158 (351)
T TIGR03700 79 MSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKE 158 (351)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHH
Q ss_pred cCCCCEEE--------------eCCCCCcHHHHHHHHHHHHHcCCcEEEccCCchH
Q 015289 307 GNLADVIN--------------IKLAKVGVLGALEIIEVVRASGLNLMIGGMVETR 348 (409)
Q Consensus 307 ~~a~div~--------------~k~~~~Gi~~~~~i~~~A~~~gi~~~~~~~~es~ 348 (409)
+| +|.+. +.+.+....+++++++.|++.|+++..+.+++.+
T Consensus 159 AG-ld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~Glg 213 (351)
T TIGR03700 159 AG-LDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGHI 213 (351)
T ss_pred cC-CCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeCC
No 368
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=37.72 E-value=60 Score=32.52 Aligned_cols=141 Identities=16% Similarity=0.225 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCC---ChhHHHHHHHHHHh-h-CCCcEEEEeCCCC------CCHHHHHHHHHHHHh
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGK---NLKEDIEVLRAIRA-V-HPDSSFILDANEG------YKPQEAVEVLEKLYE 254 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~---~~~~d~~~l~avr~-~-~~~~~l~vDaN~~------w~~~~A~~~~~~L~~ 254 (409)
+.++..+..+++.+.||+.+=.-+.. +...-.++++.+-+ + --++.+++|.|.. ++.++ ++.+++
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~~d----l~~~~~ 87 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISYDD----LSFFKE 87 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BTTB----THHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHH----HHHHHH
Confidence 46667777888888999887655541 22333455555544 2 2579999999975 33333 233444
Q ss_pred CCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEE------E--eCCCCCcH--HH
Q 015289 255 MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI------N--IKLAKVGV--LG 324 (409)
Q Consensus 255 ~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div------~--~k~~~~Gi--~~ 324 (409)
.|+...=+-+-+.. +..+++++ . ++.|++.=|..+..++..+++.++ |.= | |++ ..|+ .-
T Consensus 88 lGi~~lRlD~Gf~~---~~ia~ls~----n-g~~I~LNASti~~~~l~~L~~~~~-~~~~i~a~HNfYPr~-~TGLs~~~ 157 (357)
T PF05913_consen 88 LGIDGLRLDYGFSG---EEIAKLSK----N-GIKIELNASTITEEELDELIKYGA-NFSNIIACHNFYPRP-YTGLSEEF 157 (357)
T ss_dssp HT-SEEEESSS-SC---HHHHHHTT----T--SEEEEETTT--CCHHHHHCCTT---GGGEEEE---B-ST-T-SB-HHH
T ss_pred cCCCEEEECCCCCH---HHHHHHHh----C-CCEEEEECCCCChHHHHHHHHhcC-CHHHeEEEecccCCC-CCCCCHHH
Confidence 44432234555543 44566653 3 799999999878888888887664 211 2 332 2473 34
Q ss_pred HHHHHHHHHHcCCcEE
Q 015289 325 ALEIIEVVRASGLNLM 340 (409)
Q Consensus 325 ~~~i~~~A~~~gi~~~ 340 (409)
..+.-++-+++|++++
T Consensus 158 f~~~n~~~k~~gi~~~ 173 (357)
T PF05913_consen 158 FIEKNQLLKEYGIKTA 173 (357)
T ss_dssp HHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHCCCcEE
Confidence 5788899999999975
No 369
>PLN02535 glycolate oxidase
Probab=37.68 E-value=3.4e+02 Score=27.32 Aligned_cols=77 Identities=14% Similarity=0.160 Sum_probs=48.5
Q ss_pred CHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC---CC--cHHHHHHHHHHHHHc--CCcEEEc
Q 015289 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA---KV--GVLGALEIIEVVRAS--GLNLMIG 342 (409)
Q Consensus 270 d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~---~~--Gi~~~~~i~~~A~~~--gi~~~~~ 342 (409)
+|+.++++++ ..+.||...+- .+.++.+.+++.| +|.|.+--. .. |+.....+.++.++. .++++..
T Consensus 211 tW~~i~~lr~----~~~~PvivKgV-~~~~dA~~a~~~G-vD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~d 284 (364)
T PLN02535 211 SWKDIEWLRS----ITNLPILIKGV-LTREDAIKAVEVG-VAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLD 284 (364)
T ss_pred CHHHHHHHHh----ccCCCEEEecC-CCHHHHHHHHhcC-CCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEee
Confidence 5777777764 57899999887 6788999999887 688755311 11 222223334444443 5888877
Q ss_pred cCCchHHHHH
Q 015289 343 GMVETRLAMG 352 (409)
Q Consensus 343 ~~~es~i~~~ 352 (409)
+-+.++.-..
T Consensus 285 GGIr~g~Dv~ 294 (364)
T PLN02535 285 GGVRRGTDVF 294 (364)
T ss_pred CCCCCHHHHH
Confidence 6665554433
No 370
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=37.66 E-value=3.9e+02 Score=25.86 Aligned_cols=153 Identities=18% Similarity=0.162 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecC----C--ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVG----K--NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG----~--~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (409)
+.+.+.+.++.+.+.|.+.+=+--. . ..++=.+.++.+++. ..++.+++=.. . +..++++.++..++.|..
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~~~~a~~~Gad 103 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQAIEYAQAAERAGAD 103 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHHHHHHHHHHHHhCCC
Confidence 5677788888889999988765432 1 223334456666665 56788887664 4 889999999999998865
Q ss_pred CceeecCCCC-CCHHHHHHhHHHhhccCCCeEEeCC---CCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHH
Q 015289 259 PVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSVAADE---SCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVR 333 (409)
Q Consensus 259 ~~~iEeP~~~-~d~~~~~~l~~~~~~~~~ipIa~dE---s~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~ 333 (409)
-..+=-|.-. -.-+++.+.-+.+.+.+++||..=. ...+++.+.++.+.. -.++-+|-+ +| +....++.....
T Consensus 104 av~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~~~~-pni~giK~s-~~d~~~~~~~~~~~~ 181 (303)
T PRK03620 104 GILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLAERC-PNLVGFKDG-VGDIELMQRIVRALG 181 (303)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHhhC-CCEEEEEeC-CCCHHHHHHHHHHcC
Confidence 3344444211 1223332211122246789987432 233566677776332 477778876 45 655555543322
Q ss_pred HcCCcEEEcc
Q 015289 334 ASGLNLMIGG 343 (409)
Q Consensus 334 ~~gi~~~~~~ 343 (409)
-+..+..|.
T Consensus 182 -~~f~vl~G~ 190 (303)
T PRK03620 182 -DRLLYLGGL 190 (303)
T ss_pred -CCeEEEeCC
Confidence 255555553
No 371
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=37.31 E-value=5e+02 Score=27.07 Aligned_cols=98 Identities=10% Similarity=0.116 Sum_probs=46.9
Q ss_pred HHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhhCCCcEEEEe--CCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCC
Q 015289 194 ASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILD--ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 270 (409)
Q Consensus 194 ~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~~~~~~l~vD--aN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d 270 (409)
++...+.|...|.+--. .+++.-...++.+++.|-.+.+++- ..-..+.+...++++.+.+.|.....|-+-.---.
T Consensus 111 v~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~ 190 (468)
T PRK12581 111 ISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAGILT 190 (468)
T ss_pred HHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcC
Confidence 44445566666554332 2333333345555555433222211 12234555556666666666555445555555444
Q ss_pred HHHHHHhHHHhhccCCCeEEe
Q 015289 271 WEGLGHVSHIAKDKFGVSVAA 291 (409)
Q Consensus 271 ~~~~~~l~~~~~~~~~ipIa~ 291 (409)
.....++-+.+++..++||..
T Consensus 191 P~~v~~Lv~alk~~~~~pi~~ 211 (468)
T PRK12581 191 PKAAKELVSGIKAMTNLPLIV 211 (468)
T ss_pred HHHHHHHHHHHHhccCCeEEE
Confidence 444444444444445566654
No 372
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=37.11 E-value=2.2e+02 Score=29.10 Aligned_cols=108 Identities=19% Similarity=0.337 Sum_probs=64.9
Q ss_pred eCCC----CCCHHHHHHHHHHHHhCCCCCceeecCCCC---CCHHHHHHhHHHhhccCCC---eEEeCCCCCCHHHHHHH
Q 015289 235 DANE----GYKPQEAVEVLEKLYEMGVTPVLFEQPVHR---DDWEGLGHVSHIAKDKFGV---SVAADESCRSLDDVKKI 304 (409)
Q Consensus 235 DaN~----~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~---~d~~~~~~l~~~~~~~~~i---pIa~dEs~~~~~~~~~~ 304 (409)
|.+| .++.++=+++++.|+++|+. +||==++. .+.+..+.+.. ..++ .....-......++..+
T Consensus 12 DG~Q~~g~~~s~e~Ki~Ia~~Ld~lGv~--~IE~g~p~~s~~~~~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~ea~ 85 (409)
T COG0119 12 DGEQAPGVSFSVEEKIRIAKALDDLGVD--YIEAGFPVASPGDFEFVRAIAE----KAGLFICALIAALARAIKRDIEAL 85 (409)
T ss_pred cCCcCCCCcCCHHHHHHHHHHHHHcCCC--EEEEeCCcCChhhHHHHHHHHH----hcCcccchhhhhhHHhHHhhHHHH
Confidence 6655 47999999999999999985 99976653 45655655542 1122 01111112223366777
Q ss_pred HHcCCCCEEE-------------eCCCCCc-HHHHHHHHHHHHHcCCcEE--EccCCchHH
Q 015289 305 VKGNLADVIN-------------IKLAKVG-VLGALEIIEVVRASGLNLM--IGGMVETRL 349 (409)
Q Consensus 305 i~~~a~div~-------------~k~~~~G-i~~~~~i~~~A~~~gi~~~--~~~~~es~i 349 (409)
++.+. +.+. ++-++.. +..+.+.+.+|+.+|+.+. +.+.+.+..
T Consensus 86 ~~a~~-~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~ 145 (409)
T COG0119 86 LEAGV-DRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDP 145 (409)
T ss_pred HhCCC-CEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCH
Confidence 77663 4432 2222223 3456778999999999988 444444443
No 373
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=37.04 E-value=2.5e+02 Score=25.54 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=7.7
Q ss_pred HHHHHHHcCCcEEEcc
Q 015289 328 IIEVVRASGLNLMIGG 343 (409)
Q Consensus 328 i~~~A~~~gi~~~~~~ 343 (409)
++++|++.|+++++|+
T Consensus 113 ~~~~a~e~~~pv~iH~ 128 (251)
T cd01310 113 QLELAKELNLPVVIHS 128 (251)
T ss_pred HHHHHHHhCCCeEEEe
Confidence 3444444455554443
No 374
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=36.90 E-value=1.9e+02 Score=28.33 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHHHHcCCcEEEccCC
Q 015289 321 GVLGALEIIEVVRASGLNLMIGGMV 345 (409)
Q Consensus 321 Gi~~~~~i~~~A~~~gi~~~~~~~~ 345 (409)
...+.++.++.|++.|+++..+.++
T Consensus 179 s~~~~l~~i~~a~~~Gi~v~~~~ii 203 (340)
T TIGR03699 179 SSEEWLEVMETAHKLGLPTTATMMF 203 (340)
T ss_pred CHHHHHHHHHHHHHcCCCccceeEe
Confidence 3567899999999999998766554
No 375
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=35.55 E-value=1.9e+02 Score=28.50 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=47.3
Q ss_pred eecCCCHH-HHHHHHHHHHHcCCCeEEEecCC-----ChhHHHHHHHHHHhhCCCcEEEEeCCCC-CCHHHHHHHHHH
Q 015289 181 TIPIVSPA-EAAELASKYRKQGFTTLKLKVGK-----NLKEDIEVLRAIRAVHPDSSFILDANEG-YKPQEAVEVLEK 251 (409)
Q Consensus 181 ~i~~~~~~-~~~~~~~~~~~~Gf~~~KiKvG~-----~~~~d~~~l~avr~~~~~~~l~vDaN~~-w~~~~A~~~~~~ 251 (409)
-++..+.+ ...+.++...+.|-..+-++.-. .-..|.+.+..+++..++ +-|-+|+. +|+++|.+.++.
T Consensus 144 RlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~--ipvi~NGdI~s~~~a~~~l~~ 219 (323)
T COG0042 144 RLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPS--IPVIANGDIKSLEDAKEMLEY 219 (323)
T ss_pred ecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCC--CeEEeCCCcCCHHHHHHHHHh
Confidence 34444443 23344555556788888887531 112688899999998766 77889988 899999888776
No 376
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=35.47 E-value=4.1e+02 Score=27.18 Aligned_cols=126 Identities=15% Similarity=0.277 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeec
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 264 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEe 264 (409)
.+++++.+.+++..++|-..+-++.|.. .+.++.+++.+--..+ | |+--++-. ..+...+ =|-
T Consensus 140 mt~d~~~~~ie~qa~~GVDfmTiHcGi~----~~~~~~~~~~~R~~gi-V------SRGGs~~~-~WM~~n~-----~EN 202 (431)
T PRK13352 140 MTEDDLFDVIEKQAKDGVDFMTIHCGVT----RETLERLKKSGRIMGI-V------SRGGSFLA-AWMLHNN-----KEN 202 (431)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEccchh----HHHHHHHHhcCCccCe-e------cCCHHHHH-HHHHHcC-----CcC
Confidence 4788888989888999999999999842 2334444442210111 1 22222111 1122222 255
Q ss_pred CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCC-CCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEc
Q 015289 265 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL-ADVINIKLAKVG-VLGALEIIEVVRASGLNLMIG 342 (409)
Q Consensus 265 P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a-~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~ 342 (409)
|+- ++++.+-++.+ ++++-+.+|..+.- |+ .|. -|-.++- +.-.-++++.|+++|+.+|+-
T Consensus 203 Ply-e~fD~lLeI~~----~yDVtlSLGDglRP----------G~i~Da--~D~aQi~El~~lgeL~~RA~e~gVQvMVE 265 (431)
T PRK13352 203 PLY-EHFDYLLEILK----EYDVTLSLGDGLRP----------GCIADA--TDRAQIQELITLGELVKRAREAGVQVMVE 265 (431)
T ss_pred chH-HHHHHHHHHHH----HhCeeeeccCCcCC----------CccccC--CcHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 663 34555666553 67888888876541 10 000 1111111 222335677778888888875
Q ss_pred cC
Q 015289 343 GM 344 (409)
Q Consensus 343 ~~ 344 (409)
+.
T Consensus 266 GP 267 (431)
T PRK13352 266 GP 267 (431)
T ss_pred CC
Confidence 43
No 377
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=35.24 E-value=4.4e+02 Score=25.86 Aligned_cols=106 Identities=14% Similarity=0.213 Sum_probs=67.4
Q ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHh----CCC--CCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHH
Q 015289 229 DSSFILDANEGYKPQEAVEVLEKLYE----MGV--TPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVK 302 (409)
Q Consensus 229 ~~~l~vDaN~~w~~~~A~~~~~~L~~----~~l--~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~ 302 (409)
.+.+=||+.-+++.+.-++-+++|.+ .++ .-..|==|..++-+...++|. +-|+++-+- -+++..+..
T Consensus 90 ~Vs~EVdp~la~d~~~~i~~A~~l~~~~~~~gi~~~~i~IKIPaT~eGi~A~~~L~-----~~GI~vn~T-lvFS~~Qa~ 163 (313)
T cd00957 90 RVSTEVDARLSFDTNATIAKARKLIKLYEEAGIDKERILIKIAATWEGIQAAKQLE-----KEGIHCNLT-LLFSFAQAV 163 (313)
T ss_pred CEEEEEecccccCHHHHHHHHHHHHHHhHhcCCCCCcEEEEeCCCHHHHHHHHHHH-----HCCCceeee-eecCHHHHH
Confidence 36777999888887665555555533 222 114777777544344444443 235555431 178999988
Q ss_pred HHHHcCCCCEEEeCCCCC-------------------cHHHHHHHHHHHHHcCCcEEE
Q 015289 303 KIVKGNLADVINIKLAKV-------------------GVLGALEIIEVVRASGLNLMI 341 (409)
Q Consensus 303 ~~i~~~a~div~~k~~~~-------------------Gi~~~~~i~~~A~~~gi~~~~ 341 (409)
.+.++| ++++.|=++|+ |+....++..+-+.+|.+..+
T Consensus 164 ~aa~AG-a~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~v 220 (313)
T cd00957 164 ACAEAG-VTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFGYKTKV 220 (313)
T ss_pred HHHHcC-CCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHcCCCcEE
Confidence 888887 58887655543 555577888999999887543
No 378
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=35.20 E-value=2.5e+02 Score=26.71 Aligned_cols=62 Identities=18% Similarity=0.355 Sum_probs=33.8
Q ss_pred HHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEE
Q 015289 272 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMI 341 (409)
Q Consensus 272 ~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~ 341 (409)
++++.|.+ .++++++||.. .+.+..++....+ .+|++|+-.-. .+--.++..+.+.|.++.+
T Consensus 60 eGL~iL~~-vk~~~glpvvT--eV~~~~~~~~vae--~vDilQIgArn---~rn~~LL~a~g~t~kpV~l 121 (258)
T TIGR01362 60 EGLKILQK-VKEEFGVPILT--DVHESSQCEPVAE--VVDIIQIPAFL---CRQTDLLVAAAKTGRIVNV 121 (258)
T ss_pred HHHHHHHH-HHHHhCCceEE--EeCCHHHHHHHHh--hCcEEEeCchh---cchHHHHHHHhccCCeEEe
Confidence 44555544 34567788877 3556666655543 37777763221 1222344444455677665
No 379
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=34.93 E-value=4.4e+02 Score=25.73 Aligned_cols=136 Identities=15% Similarity=0.248 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCC-hhHHH-HHHHHHHhhCCCc-EEEEeCCCCCCHHHHHHHHHHHHhCCCCCce
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGKN-LKEDI-EVLRAIRAVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~-~~~d~-~~l~avr~~~~~~-~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (409)
.+.+++...++.+.+.|.+.|.+--|.+ +..|+ +.++.+++.+ .+ .+.+..|+..-. +.++.|.+.++. +
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~dl~~li~~i~~~~-~l~~i~itTNG~ll~----~~~~~L~~aGl~--~ 117 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLTGGEPLVRRGCDQLVARLGKLP-GLEELSLTTNGSRLA----RFAAELADAGLK--R 117 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECcCCCccccHHHHHHHHHhCC-CCceEEEEeChhHHH----HHHHHHHHcCCC--e
Confidence 3667777777777788988888876632 33443 3455565543 23 688899987532 356777777764 5
Q ss_pred eecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCH-HHHHHHHHcCCCCEEEeCCCC-Cc--HHHHHHHHHHHHHcCC
Q 015289 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSL-DDVKKIVKGNLADVINIKLAK-VG--VLGALEIIEVVRASGL 337 (409)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~-~~~~~~i~~~a~div~~k~~~-~G--i~~~~~i~~~A~~~gi 337 (409)
+-=-+..-+.+.+.+++. .+ +.... ..+..+.+.|. .-+.+...- -| ..+..++++++++.|+
T Consensus 118 v~ISlDs~~~e~~~~i~~-----~g-------~~~~vl~~i~~~~~~Gi-~~v~in~v~~~g~N~~ei~~~~~~~~~~gi 184 (329)
T PRK13361 118 LNISLDTLRPELFAALTR-----NG-------RLERVIAGIDAAKAAGF-ERIKLNAVILRGQNDDEVLDLVEFCRERGL 184 (329)
T ss_pred EEEEeccCCHHHhhhhcC-----CC-------CHHHHHHHHHHHHHcCC-CceEEEEEEECCCCHHHHHHHHHHHHhcCC
Confidence 543444434444554421 11 11111 12233333332 111121111 14 4677888999999998
Q ss_pred cEE
Q 015289 338 NLM 340 (409)
Q Consensus 338 ~~~ 340 (409)
.+.
T Consensus 185 ~~~ 187 (329)
T PRK13361 185 DIA 187 (329)
T ss_pred eEE
Confidence 764
No 380
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=34.89 E-value=2.2e+02 Score=22.72 Aligned_cols=72 Identities=14% Similarity=0.270 Sum_probs=49.1
Q ss_pred HHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHc--CCcEEEccCC
Q 015289 273 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRAS--GLNLMIGGMV 345 (409)
Q Consensus 273 ~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~--gi~~~~~~~~ 345 (409)
++..++..+++ .+..+..=....+..++.+.+.....|++-+-..... .....++++.+++. ++.+++||..
T Consensus 16 Gl~~la~~l~~-~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 16 GLLYLAAYLRK-AGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp HHHHHHHHHHH-TTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred HHHHHHHHHHH-CCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 44555554443 3655543333345577777777778999998875554 77889999998887 7889998864
No 381
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=34.88 E-value=4.1e+02 Score=25.31 Aligned_cols=152 Identities=17% Similarity=0.218 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEec--CC----ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKV--GK----NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKv--G~----~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (409)
+.+.+.+.++.+.+.|.+.+=+-- |. ..++=.+.++.+.+. .+++.+++=. ++-+.++++++++..++.|..
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv-~~~st~~~i~~a~~a~~~Gad 98 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGV-GANSTEEAIELARHAQDAGAD 98 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEE-ESSSHHHHHHHHHHHHHTT-S
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecC-cchhHHHHHHHHHHHhhcCce
Confidence 456677888888899998877643 21 223334445666665 5678888743 345799999999999999876
Q ss_pred CceeecCCCC-CCHHHHHHhHHHhhccCCCeEEeCCC------CCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHH
Q 015289 259 PVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSVAADES------CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIE 330 (409)
Q Consensus 259 ~~~iEeP~~~-~d~~~~~~l~~~~~~~~~ipIa~dEs------~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~ 330 (409)
-..+--|... -+.+++.+.-+.+...+++||..=-. ..+...+.++.+ .-.++-+|.+- | +....++..
T Consensus 99 ~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~--~~nv~giK~s~-~~~~~~~~~~~ 175 (289)
T PF00701_consen 99 AVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAK--IPNVVGIKDSS-GDLERLIQLLR 175 (289)
T ss_dssp EEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHT--STTEEEEEESS-SBHHHHHHHHH
T ss_pred EEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhc--CCcEEEEEcCc-hhHHHHHHHhh
Confidence 4456667431 22333322222222468899986321 234455666665 45788888654 4 544444433
Q ss_pred HHHHcCCcEEEc
Q 015289 331 VVRASGLNLMIG 342 (409)
Q Consensus 331 ~A~~~gi~~~~~ 342 (409)
.. .-++.+..|
T Consensus 176 ~~-~~~~~v~~G 186 (289)
T PF00701_consen 176 AV-GPDFSVFCG 186 (289)
T ss_dssp HS-STTSEEEES
T ss_pred hc-ccCeeeecc
Confidence 22 245666665
No 382
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=34.49 E-value=4e+02 Score=25.04 Aligned_cols=171 Identities=22% Similarity=0.210 Sum_probs=87.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeec
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 264 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEe 264 (409)
.+.++..+.++.+.+.|+..+-+-+..--+.|.+.++.+++..++.++. +-...+.+.. +...+.++. ++-=
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~~~~~~~--~~~r~~~~~v----~~a~~~g~~--~i~i 88 (259)
T cd07939 17 FSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIVALGLPARLI--VWCRAVKEDI----EAALRCGVT--AVHI 88 (259)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHhcCCCCEEE--EeccCCHHHH----HHHHhCCcC--EEEE
Confidence 3667777888888888999888754322246668888888865555543 2233344432 333445543 3332
Q ss_pred CCCCCCH--------------HHHHHhHHHhhccCCCeEE---eCCCCCCHHHHHHHH----HcCCCCEEEeCCCCCc--
Q 015289 265 PVHRDDW--------------EGLGHVSHIAKDKFGVSVA---ADESCRSLDDVKKIV----KGNLADVINIKLAKVG-- 321 (409)
Q Consensus 265 P~~~~d~--------------~~~~~l~~~~~~~~~ipIa---~dEs~~~~~~~~~~i----~~~a~div~~k~~~~G-- 321 (409)
.++..+. +.+.+..+.++ ..+..+. .+.+-.++..+.+++ +.| +|.+.+.=+- |
T Consensus 89 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~-~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~i~l~DT~-G~~ 165 (259)
T cd07939 89 SIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAK-DRGLFVSVGAEDASRADPDFLIEFAEVAQEAG-ADRLRFADTV-GIL 165 (259)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HCCCeEEEeeccCCCCCHHHHHHHHHHHHHCC-CCEEEeCCCC-CCC
Confidence 2222222 12222222222 2355444 334455666655444 445 5666554332 4
Q ss_pred -HHHHHHHHH-HHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceec
Q 015289 322 -VLGALEIIE-VVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 368 (409)
Q Consensus 322 -i~~~~~i~~-~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e 368 (409)
..+..+++. +-+.+++++.+|+....+++. +--++|....+.++|
T Consensus 166 ~P~~v~~lv~~l~~~~~~~l~~H~Hn~~Gla~--An~laAi~aG~~~vd 212 (259)
T cd07939 166 DPFTTYELIRRLRAATDLPLEFHAHNDLGLAT--ANTLAAVRAGATHVS 212 (259)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEecCCCChHH--HHHHHHHHhCCCEEE
Confidence 334555544 445667888888754444443 333443333334443
No 383
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=34.46 E-value=4.8e+02 Score=26.04 Aligned_cols=116 Identities=16% Similarity=0.290 Sum_probs=69.6
Q ss_pred HHHHHHHcCCCeEEEecC-C-------ChhHHHHHHHHHHhh-C-CCc----EEE-E-----------eC---------C
Q 015289 193 LASKYRKQGFTTLKLKVG-K-------NLKEDIEVLRAIRAV-H-PDS----SFI-L-----------DA---------N 237 (409)
Q Consensus 193 ~~~~~~~~Gf~~~KiKvG-~-------~~~~d~~~l~avr~~-~-~~~----~l~-v-----------Da---------N 237 (409)
.+.++++.||+.+=+... . ++++.++..+.+.+. . -++ .|- | |. .
T Consensus 90 ~i~~ai~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~ 169 (347)
T PRK09196 90 TCQRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHD 169 (347)
T ss_pred HHHHHHHcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccchh
Confidence 356677899999998866 2 577888877777653 1 111 120 0 11 1
Q ss_pred CCC-CHHHHHHHHHHHHh----------CCCCCceee--cCC-CCCCHHHHHHhHHHhhccC-CCeEEeCC-CCC-----
Q 015289 238 EGY-KPQEAVEVLEKLYE----------MGVTPVLFE--QPV-HRDDWEGLGHVSHIAKDKF-GVSVAADE-SCR----- 296 (409)
Q Consensus 238 ~~w-~~~~A~~~~~~L~~----------~~l~~~~iE--eP~-~~~d~~~~~~l~~~~~~~~-~ipIa~dE-s~~----- 296 (409)
..| ++++|.+|+++..- .|. |-. .|- +.-|++-++++++ .+ ++|+.+-= |-.
T Consensus 170 ~~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~---Yk~~~~p~~~~LdfdrL~eI~~----~v~~vPLVLHGgSG~~~~~~ 242 (347)
T PRK09196 170 QLLTDPEEAADFVKKTQVDALAIAIGTSHGA---YKFTRKPTGDVLAIDRIKEIHA----RLPNTHLVMHGSSSVPQELL 242 (347)
T ss_pred hcCCCHHHHHHHHHHhCcCeEhhhhccccCC---CCCCCCCChhhccHHHHHHHHh----cCCCCCEEEeCCCCCCHHHH
Confidence 226 49999999987542 232 332 352 1247888888864 56 69988643 323
Q ss_pred ----------------CHHHHHHHHHcCCCCEEEeC
Q 015289 297 ----------------SLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 297 ----------------~~~~~~~~i~~~a~div~~k 316 (409)
..++++++++.|.. =||++
T Consensus 243 ~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~-KINi~ 277 (347)
T PRK09196 243 DIINEYGGDMPETYGVPVEEIQEGIKHGVR-KVNID 277 (347)
T ss_pred HHHHHhcCCccccCCCCHHHHHHHHHCCCc-eEEeC
Confidence 34667788877643 33443
No 384
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=34.45 E-value=3.5e+02 Score=26.18 Aligned_cols=86 Identities=19% Similarity=0.222 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeec---CCCCCCHHHHHHhHHHhhccCCCeEEe
Q 015289 215 EDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ---PVHRDDWEGLGHVSHIAKDKFGVSVAA 291 (409)
Q Consensus 215 ~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEe---P~~~~d~~~~~~l~~~~~~~~~ipIa~ 291 (409)
.|.+.+++|++.. ++.++-=...++ ..-++.|.+.|+. +|-+ +.|.+ +.+... ++++++|+..
T Consensus 54 ~~p~~I~~I~~~V-~iPVig~~kigh-----~~Ea~~L~~~GvD--iIDeTe~lrPad--e~~~~~----K~~f~vpfma 119 (287)
T TIGR00343 54 SDPKMIKEIMDAV-SIPVMAKVRIGH-----FVEAQILEALGVD--YIDESEVLTPAD--WTFHID----KKKFKVPFVC 119 (287)
T ss_pred CCHHHHHHHHHhC-CCCEEEEeeccH-----HHHHHHHHHcCCC--EEEccCCCCcHH--HHHHHH----HHHcCCCEEc
Confidence 4677788888864 444443333333 3445677888875 7733 33322 223333 3467899999
Q ss_pred CCCCCCHHHHHHHHHcCCCCEEEeCC
Q 015289 292 DESCRSLDDVKKIVKGNLADVINIKL 317 (409)
Q Consensus 292 dEs~~~~~~~~~~i~~~a~div~~k~ 317 (409)
| +.++.+..+.++.| +|++.-+.
T Consensus 120 d--~~~l~EAlrai~~G-admI~Tt~ 142 (287)
T TIGR00343 120 G--ARDLGEALRRINEG-AAMIRTKG 142 (287)
T ss_pred c--CCCHHHHHHHHHCC-CCEEeccc
Confidence 5 67888999999888 59998884
No 385
>PRK07695 transcriptional regulator TenI; Provisional
Probab=34.37 E-value=3.4e+02 Score=24.27 Aligned_cols=81 Identities=15% Similarity=0.235 Sum_probs=47.3
Q ss_pred HHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceee-cC---------CCCCCHHHHHHhHHHhhccCCCeE
Q 015289 220 LRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE-QP---------VHRDDWEGLGHVSHIAKDKFGVSV 289 (409)
Q Consensus 220 l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE-eP---------~~~~d~~~~~~l~~~~~~~~~ipI 289 (409)
++.+|+..++..+.+.++ +.+++. .+.+.+.. |+= -| .+..+++.++++.+ .+++||
T Consensus 86 ~~~~r~~~~~~~ig~s~~---s~e~a~----~a~~~Gad--yi~~g~v~~t~~k~~~~~~g~~~l~~~~~----~~~ipv 152 (201)
T PRK07695 86 VRSVREKFPYLHVGYSVH---SLEEAI----QAEKNGAD--YVVYGHVFPTDCKKGVPARGLEELSDIAR----ALSIPV 152 (201)
T ss_pred HHHHHHhCCCCEEEEeCC---CHHHHH----HHHHcCCC--EEEECCCCCCCCCCCCCCCCHHHHHHHHH----hCCCCE
Confidence 456666667777777543 566643 34445543 331 11 12224555565543 467888
Q ss_pred EeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 290 AADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 290 a~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
.+-=-+ ++.++..+++.| +|.+.+
T Consensus 153 ia~GGI-~~~~~~~~~~~G-a~gvav 176 (201)
T PRK07695 153 IAIGGI-TPENTRDVLAAG-VSGIAV 176 (201)
T ss_pred EEEcCC-CHHHHHHHHHcC-CCEEEE
Confidence 765555 788888888877 576643
No 386
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=34.21 E-value=4e+02 Score=25.01 Aligned_cols=53 Identities=23% Similarity=0.266 Sum_probs=41.4
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEeCCCCC--CHHHHHHHHHHHHhCCCCCceeec
Q 015289 212 NLKEDIEVLRAIRAVHPDSSFILDANEGY--KPQEAVEVLEKLYEMGVTPVLFEQ 264 (409)
Q Consensus 212 ~~~~d~~~l~avr~~~~~~~l~vDaN~~w--~~~~A~~~~~~L~~~~l~~~~iEe 264 (409)
++++-+..+++|++..+...+.+|.-.+| +.+++.+.++++.+.|..-.-||+
T Consensus 56 tl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED 110 (240)
T cd06556 56 PVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEG 110 (240)
T ss_pred CHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEcC
Confidence 34566777888888777788999987665 358899999999988875567887
No 387
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=33.96 E-value=41 Score=22.28 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=20.5
Q ss_pred HHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhC
Q 015289 193 LASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH 227 (409)
Q Consensus 193 ~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~ 227 (409)
.+.++...||..++.-.|-....+.+..+.+|.++
T Consensus 3 ~a~Rl~~AgF~~i~~g~g~~~~~eeEt~qkL~~AF 37 (41)
T PF11590_consen 3 TAERLRSAGFATIGSGAGLPSSEEEETRQKLRRAF 37 (41)
T ss_dssp HHHHHHHTT-EEECTTS------HHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhccCccccchhhHHHHHHHHHHH
Confidence 35567778999998888766667777777777653
No 388
>PF12040 DUF3526: Domain of unknown function (DUF3526); InterPro: IPR021913 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 149 to 170 amino acids in length. This domain has a single completely conserved residue P that may be functionally important.
Probab=33.61 E-value=1.1e+02 Score=26.65 Aligned_cols=49 Identities=22% Similarity=0.153 Sum_probs=36.0
Q ss_pred HHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHh
Q 015289 218 EVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 277 (409)
Q Consensus 218 ~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l 277 (409)
+...++|+.. |.|..|+.....-.-+-|+++++. |+|+ ++. ++.++...
T Consensus 4 e~~~~~r~~~-------d~h~~~d~~~~~~~~~~l~~ypv~--~~~~-lp~-~f~~~~~~ 52 (156)
T PF12040_consen 4 EFDLAQREAL-------DGHNPWDPPFAALKDAFLAQYPVD--WVED-LPV-NFRGLWYQ 52 (156)
T ss_pred HHHHHHHHHh-------ccCCccchhHHHHHHHHHHHCCcc--cccc-CCc-cHHHHHHH
Confidence 4455666643 999999988876777788999974 9999 654 66665543
No 389
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=33.44 E-value=6.4e+02 Score=27.16 Aligned_cols=126 Identities=13% Similarity=0.153 Sum_probs=56.0
Q ss_pred HHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhhCCCc--EEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCC
Q 015289 194 ASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDS--SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 270 (409)
Q Consensus 194 ~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~~~~~--~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d 270 (409)
++...+.|...|.+-.. .+++.-...++.+++.|-.+ .+..=.....+.+...++++.+.+.|.....|=+-.---.
T Consensus 103 v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~ 182 (593)
T PRK14040 103 VERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKDMAGLLK 182 (593)
T ss_pred HHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCcC
Confidence 34445556665555433 22322233344445544321 1221112234555556666666666554445555554444
Q ss_pred HHHHHHhHHHhhccCCCeEEeCCCCC---CHHHHHHHHHcCCCCEEEeCCCCC
Q 015289 271 WEGLGHVSHIAKDKFGVSVAADESCR---SLDDVKKIVKGNLADVINIKLAKV 320 (409)
Q Consensus 271 ~~~~~~l~~~~~~~~~ipIa~dEs~~---~~~~~~~~i~~~a~div~~k~~~~ 320 (409)
.....++-+.+++.+++||...=+.. ........+++| +|++..-++-+
T Consensus 183 P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~laAieAG-a~~vD~ai~gl 234 (593)
T PRK14040 183 PYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLKAIEAG-IDGVDTAISSM 234 (593)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHHHHHcC-CCEEEeccccc
Confidence 44444444444444555655421111 112233445555 46655444433
No 390
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=33.36 E-value=50 Score=31.05 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=30.9
Q ss_pred CHHHHHHHHHc--CCCCEEEeCCCCCc---HHH---HHHHHHHHHHcCCcEEEccC
Q 015289 297 SLDDVKKIVKG--NLADVINIKLAKVG---VLG---ALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 297 ~~~~~~~~i~~--~a~div~~k~~~~G---i~~---~~~i~~~A~~~gi~~~~~~~ 344 (409)
++..++.+++. ..+|++ |.++ | +.+ ..+.+++|++|||++++|+.
T Consensus 10 ~~~~~~d~Le~~g~yID~l--Kfg~-Gt~~l~~~~~l~eki~la~~~~V~v~~GGt 62 (237)
T TIGR03849 10 PPKFVEDYLKVCGDYITFV--KFGW-GTSALIDRDIVKEKIEMYKDYGIKVYPGGT 62 (237)
T ss_pred CHHHHHHHHHHhhhheeeE--EecC-ceEeeccHHHHHHHHHHHHHcCCeEeCCcc
Confidence 56666666662 345664 4443 3 333 57889999999999999973
No 391
>PRK15029 arginine decarboxylase; Provisional
Probab=33.21 E-value=2.9e+02 Score=30.67 Aligned_cols=134 Identities=13% Similarity=0.158 Sum_probs=83.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEE--EecCCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCc
Q 015289 184 IVSPAEAAELASKYRKQGFTTLK--LKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV 260 (409)
Q Consensus 184 ~~~~~~~~~~~~~~~~~Gf~~~K--iKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~ 260 (409)
+.+|+....+++++.++=|.+=+ +=++. ........+..+ .++-.+.||=|+.=|.-.|+.+ .++.|.
T Consensus 200 L~~p~G~I~eAq~~aA~~fgA~~t~FlvNG---ST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~L------~ga~Pv 270 (755)
T PRK15029 200 LLDHTGAFGESEKYAARVFGADRSWSVVVG---TSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLIL------TGAKPV 270 (755)
T ss_pred CCCCCcHHHHHHHHHHHHhCCCcEEEEeCC---hhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHH------cCCeEE
Confidence 34667777777766665443322 22332 122222333444 5677899999998766554433 555677
Q ss_pred eeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCC-C---------CEEEeCCCCCc-HHHHHHHH
Q 015289 261 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL-A---------DVINIKLAKVG-VLGALEII 329 (409)
Q Consensus 261 ~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a-~---------div~~k~~~~G-i~~~~~i~ 329 (409)
|+. |.. + ..+++-....+..+++++++.++..- + -++..-+++-| .....+++
T Consensus 271 yl~-P~~-~--------------~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY~Gv~~di~~I~ 334 (755)
T PRK15029 271 YMV-PSR-N--------------RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQ 334 (755)
T ss_pred Eec-ccc-c--------------ccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCCcceeeCHHHHH
Confidence 883 432 1 23555555556667788877775431 1 15667788889 67889999
Q ss_pred HHHHHcCCcEEEc
Q 015289 330 EVVRASGLNLMIG 342 (409)
Q Consensus 330 ~~A~~~gi~~~~~ 342 (409)
++|.++|+++.+-
T Consensus 335 ~~~h~~~~~llvD 347 (755)
T PRK15029 335 DLLEKTSDRLHFD 347 (755)
T ss_pred HHHHhcCCeEEEE
Confidence 9999999998763
No 392
>PF09872 DUF2099: Uncharacterized protein conserved in archaea (DUF2099); InterPro: IPR009181 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=33.19 E-value=2.1e+02 Score=27.08 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=42.0
Q ss_pred HHHHHHcCCCeEEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 015289 194 ASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLY 253 (409)
Q Consensus 194 ~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~ 253 (409)
++++.+.||+.+=+-+.. ..|.+.++.+-+. +++.-+..=-+.+.+.++|..+++..+
T Consensus 155 v~kAie~Gyk~IaVTV~~--~~~A~~iRele~~~~~~~~if~VHtTGis~eeA~~l~~~~D 213 (258)
T PF09872_consen 155 VKKAIEMGYKRIAVTVAD--AEDAKKIRELEKEEGVNIYIFGVHTTGISEEEAERLFEYAD 213 (258)
T ss_pred HHHHHHcCCceEEEEecC--HHHHHHHHHhhccCCCceEEEEEEccCCCHHHHHHHHHHhH
Confidence 466778999988888763 4577777776554 667666666778899999877765443
No 393
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=33.11 E-value=5.1e+02 Score=25.93 Aligned_cols=116 Identities=19% Similarity=0.254 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCCCC---------CHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCC
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRD---------DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLAD 311 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~---------d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d 311 (409)
+.++.++.++.+.+.++. +.....+.+- ..++++.|.+..+ +.|+|+.. ++.+..++..+.+. +|
T Consensus 130 ~~~~~~~~A~~lk~~g~~-~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~-~~Gl~~~t--~v~d~~~~~~l~~~--vd 203 (360)
T PRK12595 130 SYEQVEAVAKALKAKGLK-LLRGGAFKPRTSPYDFQGLGVEGLKILKQVAD-EYGLAVIS--EIVNPADVEVALDY--VD 203 (360)
T ss_pred CHHHHHHHHHHHHHcCCc-EEEccccCCCCCCccccCCCHHHHHHHHHHHH-HcCCCEEE--eeCCHHHHHHHHHh--CC
Q ss_pred EEEeCCCCCc--HHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCCCcee
Q 015289 312 VINIKLAKVG--VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFI 367 (409)
Q Consensus 312 iv~~k~~~~G--i~~~~~i~~~A~~~gi~~~~~~~~-es~i~~~~~~hlaaa~~~~~~~ 367 (409)
++++ | -..-..++..+.+.|.++.+..-. .+.--...++......+|-...
T Consensus 204 ~lkI-----~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~ 257 (360)
T PRK12595 204 VIQI-----GARNMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQII 257 (360)
T ss_pred eEEE-----CcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEE
No 394
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=33.03 E-value=4.4e+02 Score=27.16 Aligned_cols=139 Identities=17% Similarity=0.189 Sum_probs=87.2
Q ss_pred HHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhhC-CCc-EEEEeCCCCCC-HHHHHHHHHHHH-----hCCCCCcee
Q 015289 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVH-PDS-SFILDANEGYK-PQEAVEVLEKLY-----EMGVTPVLF 262 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~~-~~~-~l~vDaN~~w~-~~~A~~~~~~L~-----~~~l~~~~i 262 (409)
...+++.++|-..+.=+.| +.+++-++.++.+++.+ .|+ .+.+|.|.+-+ .+.|.+.++.-. .+|
T Consensus 5 ~~l~~a~~~~~~~~Qpr~G~~~~~e~~~~l~~l~~~g~~dvl~ltiDsytr~~~~~~a~~~l~~~~~~~~~~ln------ 78 (428)
T cd00245 5 KKLEKADKEGKLVVQPRAGFPLLEEHIELLRTLQEEGAADVLPLTIDSYTRVNDYEEAEEGLEESIKAGKSLLN------ 78 (428)
T ss_pred HHHHHHHhcCCEeecCCCCCCCHHHHHHHHHHHHhcCCCCeeccccccchhhhhhHHHHHHHHhhhhcCccccC------
Confidence 4556667788888877777 56788889999999985 675 78999998754 566666666542 222
Q ss_pred ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCE-------EEeCCCCC-c----HHHH---HH
Q 015289 263 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADV-------INIKLAKV-G----VLGA---LE 327 (409)
Q Consensus 263 EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~di-------v~~k~~~~-G----i~~~---~~ 327 (409)
==|+.-+.++.+++|.. .++.||-.-=.-.+...+.+++-....+. +++..+|. . +..+ -+
T Consensus 79 G~P~v~~g~~~~R~l~~----~~~~PlqvRhGt~d~~~l~e~~~a~g~~a~egg~isy~~py~k~~~Le~si~~wqy~~r 154 (428)
T cd00245 79 GFPIVNHGVKTCRKLLE----GVDFPVQVRHGTPDARLLAEIAIASGFDATEGGPISYNLPYSKNVPLEKSIENWQYCDR 154 (428)
T ss_pred CCCcccccHHHHHHHHH----hCCCCEeeccCCccHHHHHHHHHHhCcccccccceeeccccCCCCCHHHHHHHHHHHHH
Confidence 11777788888998875 56889844223334444444433222222 23433442 3 4444 35
Q ss_pred HHHHHHHcCCcEE
Q 015289 328 IIEVVRASGLNLM 340 (409)
Q Consensus 328 i~~~A~~~gi~~~ 340 (409)
++..=.++|+++-
T Consensus 155 l~~~y~e~gv~in 167 (428)
T cd00245 155 LVGFYEENGVPIN 167 (428)
T ss_pred HHHHHHhcCceec
Confidence 5555568888874
No 395
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=32.44 E-value=4.5e+02 Score=25.11 Aligned_cols=148 Identities=21% Similarity=0.244 Sum_probs=86.5
Q ss_pred HHHHHHHHHcCCCeEEE-ecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHH-HHhCCCCCceeecCCCC
Q 015289 191 AELASKYRKQGFTTLKL-KVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK-LYEMGVTPVLFEQPVHR 268 (409)
Q Consensus 191 ~~~~~~~~~~Gf~~~Ki-KvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~-L~~~~l~~~~iEeP~~~ 268 (409)
.+.++.+.+.|++.+-+ .++..-..+.+.++++++ .+ +-+...++...+++.++++. .+..-+.-.-+++| .
T Consensus 46 ~~~A~~~~~~Ga~~lHvVDLdgg~~~n~~~i~~i~~-~~---~~vqvGGGIR~e~i~~~l~~Ga~rViigT~Av~~~--~ 119 (262)
T PLN02446 46 AEFAEMYKRDGLTGGHVIMLGADDASLAAALEALRA-YP---GGLQVGGGVNSENAMSYLDAGASHVIVTSYVFRDG--Q 119 (262)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHh-CC---CCEEEeCCccHHHHHHHHHcCCCEEEEchHHHhCC--C
Confidence 45577788899977763 444333455777888877 32 55666777776666666553 22211111244553 2
Q ss_pred CCHHHHHHhHHHhhccCCCeEEeC----------------C-CCCCHHHH-HHHHHcCCCCEEEeCCCCCc-HHH--HHH
Q 015289 269 DDWEGLGHVSHIAKDKFGVSVAAD----------------E-SCRSLDDV-KKIVKGNLADVINIKLAKVG-VLG--ALE 327 (409)
Q Consensus 269 ~d~~~~~~l~~~~~~~~~ipIa~d----------------E-s~~~~~~~-~~~i~~~a~div~~k~~~~G-i~~--~~~ 327 (409)
-|.+-++++.+.+. .-.+-++.| | +-.++.++ .++.+.++-.++--|+.+=| +.+ .--
T Consensus 120 ~~p~~v~~~~~~~G-~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G~d~el 198 (262)
T PLN02446 120 IDLERLKDLVRLVG-KQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLGIDEEL 198 (262)
T ss_pred CCHHHHHHHHHHhC-CCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccCCCHHH
Confidence 23455666654331 001233222 1 34466774 77888887777888888877 443 233
Q ss_pred HHHHHHHcCCcEEEccCC
Q 015289 328 IIEVVRASGLNLMIGGMV 345 (409)
Q Consensus 328 i~~~A~~~gi~~~~~~~~ 345 (409)
+.++++..++++..++-.
T Consensus 199 ~~~l~~~~~ipVIASGGv 216 (262)
T PLN02446 199 VALLGEHSPIPVTYAGGV 216 (262)
T ss_pred HHHHHhhCCCCEEEECCC
Confidence 457788889999876644
No 396
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=32.36 E-value=1.4e+02 Score=26.32 Aligned_cols=44 Identities=14% Similarity=0.297 Sum_probs=32.6
Q ss_pred HHHHHHHcCCCCEEEeCCCCCc---H-HHHHHHHHHHHHcCCcEEEccC
Q 015289 300 DVKKIVKGNLADVINIKLAKVG---V-LGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 300 ~~~~~i~~~a~div~~k~~~~G---i-~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
.+.++++.| ++.+|+...... + ..+.++..+|+++++++++++.
T Consensus 17 ~l~~~~~~g-v~~v~lR~k~~~~~~~~~~a~~l~~~~~~~~~~liin~~ 64 (180)
T PF02581_consen 17 QLEAALAAG-VDLVQLREKDLSDEELLELARRLAELCQKYGVPLIINDR 64 (180)
T ss_dssp HHHHHHHTT--SEEEEE-SSS-HHHHHHHHHHHHHHHHHTTGCEEEES-
T ss_pred HHHHHHHCC-CcEEEEcCCCCCccHHHHHHHHHHHHhhcceEEEEecCC
Confidence 456777777 899999877654 3 3467899999999999999874
No 397
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=32.30 E-value=2.3e+02 Score=29.24 Aligned_cols=61 Identities=16% Similarity=0.300 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHHc--CCCeEEEec-CCC---hhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHH
Q 015289 185 VSPAEAAELASKYRKQ--GFTTLKLKV-GKN---LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEA 245 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~--Gf~~~KiKv-G~~---~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A 245 (409)
.+++++.+.+.++.+. +.+.+-+-- |.+ ++.+.+.++.+++..+++.+.++.|+....+.+
T Consensus 60 Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i 126 (442)
T TIGR01290 60 LTPEQALRKARQVAAEIPQLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHV 126 (442)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHH
Confidence 4788888887776553 345555553 422 345788899999888889999999998765443
No 398
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=31.82 E-value=4.5e+02 Score=24.84 Aligned_cols=163 Identities=13% Similarity=0.119 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCC-ChhHHHHHHHHHHhh--CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAV--HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 262 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~--~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i 262 (409)
+++.+.+. +.+.|-..+-+-+-+ +... ...-..+-+. ..++.++--.++..|.+||++.++..++..- ..||
T Consensus 20 s~~~m~~a---i~aSg~evvTvalRR~~~~~-~~~~~~~~~~i~~~~~~lLPNTaGc~tA~EAv~~A~laRe~~~-t~wI 94 (247)
T PF05690_consen 20 SPEVMREA---IEASGAEVVTVALRRVNLGS-KPGGDNILDYIDRSGYTLLPNTAGCRTAEEAVRTARLAREAFG-TNWI 94 (247)
T ss_dssp SHHHHHHH---HHHTT-SEEEEECCGSTTTS--TTCHHCCCCTTCCTSEEEEE-TT-SSHHHHHHHHHHHHHTTS--SEE
T ss_pred CHHHHHHH---HHHhCCcEEEEEEecccCCC-CCCCccHHHHhcccCCEECCcCCCCCCHHHHHHHHHHHHHHcC-CCeE
Confidence 55555433 345788888877652 1111 0000111222 2478899999999999999999998888632 2477
Q ss_pred ecCCC-------CCCHHHHHHhHHHhhccCC-CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHH
Q 015289 263 EQPVH-------RDDWEGLGHVSHIAKDKFG-VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIE 330 (409)
Q Consensus 263 EeP~~-------~~d~~~~~~l~~~~~~~~~-ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~ 330 (409)
-==+. ||.++.++.-....++... .|-+. .++.-.+++.+.| |..+.|=-+-+| +.....+-.
T Consensus 95 KLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~----~D~v~akrL~d~G-caavMPlgsPIGSg~Gi~n~~~l~~ 169 (247)
T PF05690_consen 95 KLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCT----DDPVLAKRLEDAG-CAAVMPLGSPIGSGRGIQNPYNLRI 169 (247)
T ss_dssp EE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-----S-HHHHHHHHHTT--SEBEEBSSSTTT---SSTHHHHHH
T ss_pred EEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCC----CCHHHHHHHHHCC-CCEEEecccccccCcCCCCHHHHHH
Confidence 32222 4444444432211122222 45544 4566678888887 688888766665 333344556
Q ss_pred HHHHcCCcEEEccCCchHHHHHHHHHHHccCC
Q 015289 331 VVRASGLNLMIGGMVETRLAMGFAGHLSAGLG 362 (409)
Q Consensus 331 ~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~ 362 (409)
+.++.++++++.. +||....+..|.-++
T Consensus 170 i~~~~~vPvIvDA----GiG~pSdaa~AMElG 197 (247)
T PF05690_consen 170 IIERADVPVIVDA----GIGTPSDAAQAMELG 197 (247)
T ss_dssp HHHHGSSSBEEES-------SHHHHHHHHHTT
T ss_pred HHHhcCCcEEEeC----CCCCHHHHHHHHHcC
Confidence 6778899999854 444444333343333
No 399
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=31.80 E-value=4e+02 Score=25.82 Aligned_cols=28 Identities=21% Similarity=0.478 Sum_probs=12.5
Q ss_pred cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 284 ~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
++++||..| +.+.+++....+ .+|++|+
T Consensus 85 ~~glpvvTe--V~~~~q~~~vae--~~DilQI 112 (290)
T PLN03033 85 AYDLPIVTD--VHESSQCEAVGK--VADIIQI 112 (290)
T ss_pred HHCCceEEe--eCCHHHHHHHHh--hCcEEee
Confidence 455555552 334444443332 2455544
No 400
>COG2403 Predicted GTPase [General function prediction only]
Probab=31.71 E-value=1.3e+02 Score=30.33 Aligned_cols=61 Identities=23% Similarity=0.373 Sum_probs=51.2
Q ss_pred cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEEccCCch
Q 015289 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVET 347 (409)
Q Consensus 284 ~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~~~~~es 347 (409)
-.|+||-.+++ ..++.++++...+|.+.++.+-+--..-.+++...-+.|..++..+..++
T Consensus 60 p~Gvpi~~~k~---~~~lek~ire~~VD~~VlaySDvs~e~v~~IaS~vLs~GA~f~~~gP~et 120 (449)
T COG2403 60 PLGVPILPEKD---YDDLEKIIREKDVDIVVLAYSDVSYEHVFRIASRVLSAGADFKELGPKET 120 (449)
T ss_pred cCCcccccccc---HHHHHHHHHHcCCCeEEEEcccCCHHHHHHHHHHHHhCCceeEEeCccHH
Confidence 46899999888 77899999999999888998887666778999999999999887665444
No 401
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=31.65 E-value=4.5e+02 Score=24.84 Aligned_cols=63 Identities=17% Similarity=0.280 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEec-----C---CChhHHHHHHHHHHh-h--CCCcEEEEeCCCCCCHHHHHH
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKV-----G---KNLKEDIEVLRAIRA-V--HPDSSFILDANEGYKPQEAVE 247 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKv-----G---~~~~~d~~~l~avr~-~--~~~~~l~vDaN~~w~~~~A~~ 247 (409)
.+++++.+.++++.+.|-..+++-. | .+.+++++|+..+-+ . .-++.|.+|....-..+.|++
T Consensus 20 ~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~~al~ 93 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVARAALE 93 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHH
Confidence 4788899999999999999999942 1 133445555543333 2 127889999866544444443
No 402
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=31.62 E-value=2.5e+02 Score=26.76 Aligned_cols=90 Identities=14% Similarity=0.189 Sum_probs=65.1
Q ss_pred HHHHHHhCCCC-C-ceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHH
Q 015289 248 VLEKLYEMGVT-P-VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGA 325 (409)
Q Consensus 248 ~~~~L~~~~l~-~-~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~ 325 (409)
+++..+++|.. + ..-|++.-...++.++.+++ .+.+||-.-+-+.++.++...-..| +|.+.+=+.-++-.+.
T Consensus 71 ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~----~v~~PvL~KDFiiD~yQI~~Ar~~G-ADavLLI~~~L~~~~l 145 (254)
T COG0134 71 IAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRA----AVDLPVLRKDFIIDPYQIYEARAAG-ADAVLLIVAALDDEQL 145 (254)
T ss_pred HHHHHHHhCCeEEEEecCccccCCCHHHHHHHHH----hcCCCeeeccCCCCHHHHHHHHHcC-cccHHHHHHhcCHHHH
Confidence 55666666421 1 23466666777888877754 6899999999999999998887777 4887664443343457
Q ss_pred HHHHHHHHHcCCcEEEc
Q 015289 326 LEIIEVVRASGLNLMIG 342 (409)
Q Consensus 326 ~~i~~~A~~~gi~~~~~ 342 (409)
.++++.|+++|+.+.+-
T Consensus 146 ~el~~~A~~LGm~~LVE 162 (254)
T COG0134 146 EELVDRAHELGMEVLVE 162 (254)
T ss_pred HHHHHHHHHcCCeeEEE
Confidence 88999999999998753
No 403
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=31.52 E-value=2.3e+02 Score=26.42 Aligned_cols=64 Identities=3% Similarity=0.033 Sum_probs=41.8
Q ss_pred CHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEE
Q 015289 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 270 d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~ 340 (409)
+++-++++++ .+++||..|=-+.+.++++++++.|+ +-+.+.-.. +...--+.++++.+|=+++
T Consensus 64 n~~~I~~i~~----~~~~pi~vGGGIrs~e~v~~~l~~Ga-~kvvigt~a--~~~~~~l~~~~~~fg~~iv 127 (234)
T PRK13587 64 EFDYIKSLRR----LTTKDIEVGGGIRTKSQIMDYFAAGI-NYCIVGTKG--IQDTDWLKEMAHTFPGRIY 127 (234)
T ss_pred hHHHHHHHHh----hcCCeEEEcCCcCCHHHHHHHHHCCC-CEEEECchH--hcCHHHHHHHHHHcCCCEE
Confidence 4555666653 56789999999999999999999875 554442221 2233345567777754443
No 404
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=31.41 E-value=6.4e+02 Score=26.52 Aligned_cols=122 Identities=18% Similarity=0.134 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHcCCCeEEEecCCCh-hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee----
Q 015289 188 AEAAELASKYRKQGFTTLKLKVGKNL-KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF---- 262 (409)
Q Consensus 188 ~~~~~~~~~~~~~Gf~~~KiKvG~~~-~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i---- 262 (409)
.+..+.++.+++.|...+-+-..... +.-++.++.+|+.+|+ .+-|=+..-.+.++|...++ .|....++
T Consensus 241 ~~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~-~~~V~aGnV~t~e~a~~li~----aGAd~I~vg~g~ 315 (502)
T PRK07107 241 RDYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGD-SVKVGAGNVVDREGFRYLAE----AGADFVKVGIGG 315 (502)
T ss_pred hhHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCC-CceEEeccccCHHHHHHHHH----cCCCEEEECCCC
Confidence 45667788888999999887643221 2336778888887663 14444566678887766554 44331122
Q ss_pred -------ecC-CCCCCHHHHHHhHHHhhc---cCC--CeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 263 -------EQP-VHRDDWEGLGHVSHIAKD---KFG--VSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 263 -------EeP-~~~~d~~~~~~l~~~~~~---~~~--ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
++. +..-.+..+.+++++.++ ..+ +||.+|--+.+..|+.+++..|| |.+.+
T Consensus 316 Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA-~~vm~ 380 (502)
T PRK07107 316 GSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGA-DFIML 380 (502)
T ss_pred CcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCC-Ceeee
Confidence 222 222345566666553321 124 89999999999999999999885 77755
No 405
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=31.29 E-value=4.9e+02 Score=25.66 Aligned_cols=127 Identities=13% Similarity=0.194 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecC----------CChhHHHHHHHHHHhhCC------CcEEEEeCCCCCCHHHHHHHH
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVG----------KNLKEDIEVLRAIRAVHP------DSSFILDANEGYKPQEAVEVL 249 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG----------~~~~~d~~~l~avr~~~~------~~~l~vDaN~~w~~~~A~~~~ 249 (409)
..++.++.++++.+ ....+-+.+. .+.+.-.+.+++||+... .+.+.+=---.++.++...++
T Consensus 152 ~~~dy~~~~~~~~~-~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia 230 (335)
T TIGR01036 152 AKEDYAACLRKLGP-LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIA 230 (335)
T ss_pred CHHHHHHHHHHHhh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHH
Confidence 45666666665533 3567777664 123333445666666421 266776665556655666677
Q ss_pred HHHHhCCCCC-c----e-----eecCCCCCC----------HHHHHHhHHHhhccC--CCeEEeCCCCCCHHHHHHHHHc
Q 015289 250 EKLYEMGVTP-V----L-----FEQPVHRDD----------WEGLGHVSHIAKDKF--GVSVAADESCRSLDDVKKIVKG 307 (409)
Q Consensus 250 ~~L~~~~l~~-~----~-----iEeP~~~~d----------~~~~~~l~~~~~~~~--~ipIa~dEs~~~~~~~~~~i~~ 307 (409)
+.+.+.++.= . + ++.|..... .-.++.+.. +++.. .+||.+-=.+.+.+|+.+++..
T Consensus 231 ~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~-~~~~~~~~ipiig~GGI~~~~da~e~l~a 309 (335)
T TIGR01036 231 DSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRR-LYAELQGRLPIIGVGGISSAQDALEKIRA 309 (335)
T ss_pred HHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHH-HHHHhCCCCCEEEECCCCCHHHHHHHHHc
Confidence 7776654310 0 1 121110000 112233322 12233 5899988889999999999998
Q ss_pred CCCCEEEe
Q 015289 308 NLADVINI 315 (409)
Q Consensus 308 ~a~div~~ 315 (409)
| +|.+|+
T Consensus 310 G-A~~Vqv 316 (335)
T TIGR01036 310 G-ASLLQI 316 (335)
T ss_pred C-CcHHHh
Confidence 8 577765
No 406
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=31.22 E-value=2e+02 Score=28.59 Aligned_cols=97 Identities=14% Similarity=0.185 Sum_probs=69.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCC--ceeecCCCCCCHHHHHHhHHHhhcc-CCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 239 GYKPQEAVEVLEKLYEMGVTP--VLFEQPVHRDDWEGLGHVSHIAKDK-FGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~--~~iEeP~~~~d~~~~~~l~~~~~~~-~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
.+++. ++++..++.|..- ..=|+.+-...++.++++++ . +.+||---+-+.+++++.+.-..|+ |.|.+
T Consensus 138 ~~dp~---~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~----~~v~lPvLrKDFIID~yQI~eAr~~GA-DAVLL 209 (338)
T PLN02460 138 NFDPV---EIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRN----AGVKCPLLCKEFIVDAWQIYYARSKGA-DAILL 209 (338)
T ss_pred CCCHH---HHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHH----cCCCCCEeeccccCCHHHHHHHHHcCC-CcHHH
Confidence 35553 4556666655321 23477777777888887763 4 7899999999999999988887774 88866
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCcEEEcc
Q 015289 316 KLAKVGVLGALEIIEVVRASGLNLMIGG 343 (409)
Q Consensus 316 k~~~~Gi~~~~~i~~~A~~~gi~~~~~~ 343 (409)
=..-++-.....+.++|++.|+.+.+-.
T Consensus 210 IaaiL~~~~L~~l~~~A~~LGme~LVEV 237 (338)
T PLN02460 210 IAAVLPDLDIKYMLKICKSLGMAALIEV 237 (338)
T ss_pred HHHhCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 5444443457789999999999987533
No 407
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=31.20 E-value=4.7e+02 Score=24.87 Aligned_cols=178 Identities=16% Similarity=0.113 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhC-CCcEEEE--eCC-CCCCHHHHHHHHHHHHhCCCCCce
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFIL--DAN-EGYKPQEAVEVLEKLYEMGVTPVL 261 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~-~~~~l~v--DaN-~~w~~~~A~~~~~~L~~~~l~~~~ 261 (409)
+.++..+.++.+.+.|++.+-+-.+..-..|.+.++.+++.. ++.++.. .++ ..+.... .+-++.+.+.++....
T Consensus 18 s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~a~~~g~~~i~ 96 (273)
T cd07941 18 SVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEE-DPNLQALLEAGTPVVT 96 (273)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccc-hHHHHHHHhCCCCEEE
Confidence 567777888888889999988744222256778888888763 4555443 222 1121110 1344555666665334
Q ss_pred eecCCCC------------CCHHHHHHhHHHhhccCCCeEEeC-C-----CCCCHHHHHHH----HHcCCCCEEEe-CCC
Q 015289 262 FEQPVHR------------DDWEGLGHVSHIAKDKFGVSVAAD-E-----SCRSLDDVKKI----VKGNLADVINI-KLA 318 (409)
Q Consensus 262 iEeP~~~------------~d~~~~~~l~~~~~~~~~ipIa~d-E-----s~~~~~~~~~~----i~~~a~div~~-k~~ 318 (409)
+--|.+. +.++.+.++.+.++ ..+..+..+ | +-.++..+.++ .+.| +|.+.+ |..
T Consensus 97 i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak-~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g-~~~i~l~DT~ 174 (273)
T cd07941 97 IFGKSWDLHVTEALGTTLEENLAMIRDSVAYLK-SHGREVIFDAEHFFDGYKANPEYALATLKAAAEAG-ADWLVLCDTN 174 (273)
T ss_pred EEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHH-HcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCC-CCEEEEecCC
Confidence 5444431 12223333333223 346666552 2 23345444333 4455 455544 433
Q ss_pred CCc-HHHHHHHHHH-HHHcC-CcEEEccCCchHHHHHHHHHHHccCCCCceec
Q 015289 319 KVG-VLGALEIIEV-VRASG-LNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 368 (409)
Q Consensus 319 ~~G-i~~~~~i~~~-A~~~g-i~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e 368 (409)
-.. ..+..++... .+..+ +++.+|+.... |++.+-.++|......++|
T Consensus 175 G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~--Gla~An~laA~~aGa~~id 225 (273)
T cd07941 175 GGTLPHEIAEIVKEVRERLPGVPLGIHAHNDS--GLAVANSLAAVEAGATQVQ 225 (273)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCeeEEEecCCC--CcHHHHHHHHHHcCCCEEE
Confidence 222 3344444444 34456 77777775433 4444444444333445544
No 408
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=31.15 E-value=3.5e+02 Score=24.29 Aligned_cols=63 Identities=24% Similarity=0.343 Sum_probs=42.3
Q ss_pred cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-H-------HHHHHHHHHHHHcCCcEEEccCCchH
Q 015289 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-V-------LGALEIIEVVRASGLNLMIGGMVETR 348 (409)
Q Consensus 284 ~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i-------~~~~~i~~~A~~~gi~~~~~~~~es~ 348 (409)
+.|+.|++|.--.+...+..+... .+|++.+|...+- + .-...+..+|+..|+.++..+. |+.
T Consensus 144 ~~G~~ialddfg~~~~~~~~l~~l-~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gV-e~~ 214 (241)
T smart00052 144 ELGVRIALDDFGTGYSSLSYLKRL-PVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGV-ETP 214 (241)
T ss_pred HCCCEEEEeCCCCcHHHHHHHHhC-CCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEecC-CCH
Confidence 357788887755556666555544 3788888865542 2 1234578999999999988664 555
No 409
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=30.93 E-value=5.6e+02 Score=25.66 Aligned_cols=121 Identities=17% Similarity=0.229 Sum_probs=75.6
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhCCCCC---------ceeecCCCCCCH----------------HHHHHhHHHh--hccC
Q 015289 233 ILDANEGYKPQEAVEVLEKLYEMGVTP---------VLFEQPVHRDDW----------------EGLGHVSHIA--KDKF 285 (409)
Q Consensus 233 ~vDaN~~w~~~~A~~~~~~L~~~~l~~---------~~iEeP~~~~d~----------------~~~~~l~~~~--~~~~ 285 (409)
.+-.-.--+.++|++++++|++.+-.. .|+|-|-..-.| +|++.+++.+ ..+.
T Consensus 57 IvGPCSIhd~~~aleyA~rLk~l~~~~~d~l~ivmR~y~eKPRTs~gwkGl~~DP~ldgs~~i~~GL~i~R~ll~~~~~~ 136 (356)
T PRK12822 57 IIGPCSIHDPQAALEYAKRLAVLQHQYLDQLYIVMRTYFEKPRTRKGWKGLIFDPDLDGSNDIEKGLRLARQLLLSINTL 136 (356)
T ss_pred EEcCCcCCCHHHHHHHHHHHHHHHHhhcccEEEEEEeccccCCCCCCccccccCCCCCCCccHHHHHHHHHHHHHHHHHh
Confidence 344444567899999999988753321 378888653222 4444443321 3468
Q ss_pred CCeEEeCCC-CCCHHHHHHHHHcCCCCEEEeCCCCCc--HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCC
Q 015289 286 GVSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG--VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLG 362 (409)
Q Consensus 286 ~ipIa~dEs-~~~~~~~~~~i~~~a~div~~k~~~~G--i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~ 362 (409)
|+|++..-. ..+++-+.+++. + ..+| -++..-...+|...++++.+-......+..+..+-.||+.|
T Consensus 137 GlPvatE~ld~~~~qy~~Dlis-----w-----~aIGARt~esq~hrelaSgls~PVgfKngt~g~i~~AidAi~aa~~p 206 (356)
T PRK12822 137 GLATATEFLDTTSFPYIADLIC-----W-----GAIGARTTESQVHRQLASALPCPVGFKNGTDGNIRIAIDAILAARSP 206 (356)
T ss_pred CCCEEEeecccccHHHHHHHHH-----h-----hhhccchhcCHHHHHHHhCCCCceEecCCCCCCHHHHHHHHHHHcCC
Confidence 999998432 223333333332 1 1336 45666667789999999998777778888888888887766
Q ss_pred C
Q 015289 363 C 363 (409)
Q Consensus 363 ~ 363 (409)
.
T Consensus 207 H 207 (356)
T PRK12822 207 H 207 (356)
T ss_pred C
Confidence 4
No 410
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=30.93 E-value=1.9e+02 Score=29.95 Aligned_cols=78 Identities=9% Similarity=0.013 Sum_probs=60.1
Q ss_pred eeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEE
Q 015289 261 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 261 ~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~ 340 (409)
.-|+.+-..+++.++++++ .+.+||-.-+-+.+..++.+.-..|+ |.+.+=..-++-....+++++|++.|+.+.
T Consensus 89 lTe~~~F~Gs~~~l~~vr~----~v~~PvLrKDFiid~~QI~ea~~~GA-DavLLI~~~L~~~~l~~l~~~a~~lGl~~l 163 (454)
T PRK09427 89 LTDEKYFQGSFDFLPIVRA----IVTQPILCKDFIIDPYQIYLARYYGA-DAILLMLSVLDDEQYRQLAAVAHSLNMGVL 163 (454)
T ss_pred ecCcCcCCCCHHHHHHHHH----hCCCCEEeccccCCHHHHHHHHHcCC-CchhHHHHhCCHHHHHHHHHHHHHcCCcEE
Confidence 3466666677888887764 67899999999999999988888774 888765444444457789999999999987
Q ss_pred Ecc
Q 015289 341 IGG 343 (409)
Q Consensus 341 ~~~ 343 (409)
+-.
T Consensus 164 vEv 166 (454)
T PRK09427 164 TEV 166 (454)
T ss_pred EEE
Confidence 643
No 411
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=30.57 E-value=4.1e+02 Score=24.98 Aligned_cols=64 Identities=11% Similarity=0.190 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHcCCCCE---------EEeCCCCCc----HHHHHHHHHHHHHcCCc------EEEccCCchHHHHHHHHH
Q 015289 296 RSLDDVKKIVKGNLADV---------INIKLAKVG----VLGALEIIEVVRASGLN------LMIGGMVETRLAMGFAGH 356 (409)
Q Consensus 296 ~~~~~~~~~i~~~a~di---------v~~k~~~~G----i~~~~~i~~~A~~~gi~------~~~~~~~es~i~~~~~~h 356 (409)
.++..|+..++.|+-.+ +..|--.|- +.+.+.+...|++++|+ |.+||.+|+.+....-+.
T Consensus 94 PNlkGf~~AvaaGa~EvavFgaASe~FslkNiNctiees~~rf~~v~kaA~~~ni~vRGYVScvvGCPyeG~v~P~kVa~ 173 (316)
T KOG2368|consen 94 PNLKGFEAAVAAGAEEVAVFGAASEAFSLKNINCTIEESLKRFMEVLKAAQEHNIRVRGYVSCVVGCPYEGAVQPSKVAE 173 (316)
T ss_pred cchhhHHHHHhcCceeEEeeehhhhhhhhccCCccHHHHHHHHHHHHHHHHHcCCccceEEEEEecCCccCCcCHHHHHH
Confidence 44555555555553222 233433443 34456789999999998 468898888887766555
Q ss_pred HHc
Q 015289 357 LSA 359 (409)
Q Consensus 357 laa 359 (409)
+.-
T Consensus 174 V~k 176 (316)
T KOG2368|consen 174 VVK 176 (316)
T ss_pred HHH
Confidence 443
No 412
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=30.25 E-value=5.6e+02 Score=25.47 Aligned_cols=150 Identities=17% Similarity=0.160 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHHHcC-CCeEEEecCCC----hhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHH-HHhCCC-
Q 015289 185 VSPAEAAELASKYRKQG-FTTLKLKVGKN----LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK-LYEMGV- 257 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~G-f~~~KiKvG~~----~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~-L~~~~l- 257 (409)
.+++++++.|+.+.+.| ++..=+--|++ +++-++.++.|++... +.+.+=. +-++.+|+.++.+. +..|+.
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~-le~c~sl-G~l~~eq~~~L~~aGvd~ynhN 161 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELG-LEVCASL-GMLTEEQAEKLADAGVDRYNHN 161 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcC-cHHhhcc-CCCCHHHHHHHHHcChhheecc
Confidence 46788999999999999 54444444443 3444455566664321 4444322 36888887665444 444443
Q ss_pred ---CCceeecCCCCCCHH----HHHHhHHH-hhccCCCeEEeCCCCCCHHHH-HHHHHcCCCCEE-----EeCCC-----
Q 015289 258 ---TPVLFEQPVHRDDWE----GLGHVSHI-AKDKFGVSVAADESCRSLDDV-KKIVKGNLADVI-----NIKLA----- 318 (409)
Q Consensus 258 ---~~~~iEeP~~~~d~~----~~~~l~~~-~~~~~~ipIa~dEs~~~~~~~-~~~i~~~a~div-----~~k~~----- 318 (409)
...+++.=++..-++ .+..+++. +.--+|.=+.+||+..+.-++ ..+.+...+|-| ++-+.
T Consensus 162 LeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~ 241 (335)
T COG0502 162 LETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLEN 241 (335)
T ss_pred cccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCcccc
Confidence 123556555543333 34444321 111345667788998886554 444444435544 22211
Q ss_pred -CCc-HHHHHHHHHHHHHcC
Q 015289 319 -KVG-VLGALEIIEVVRASG 336 (409)
Q Consensus 319 -~~G-i~~~~~i~~~A~~~g 336 (409)
+-. ..+.+|+++++|-.-
T Consensus 242 ~~~~~~~e~lk~IA~~Ri~~ 261 (335)
T COG0502 242 AKPLDPFEFLKTIAVARIIM 261 (335)
T ss_pred CCCCCHHHHHHHHHHHHHHC
Confidence 112 567899999988553
No 413
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=30.15 E-value=5.6e+02 Score=25.50 Aligned_cols=118 Identities=15% Similarity=0.187 Sum_probs=78.2
Q ss_pred HHHHHHHHHcC--CCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceee----
Q 015289 191 AELASKYRKQG--FTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---- 263 (409)
Q Consensus 191 ~~~~~~~~~~G--f~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE---- 263 (409)
.+.++.+++.| ...+=+.+.. .-+.-++.++.+|+.+|+..++ +..--+++.|...++ .|....++=
T Consensus 109 ~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~vi--aGNV~T~e~a~~Li~----aGAD~ikVgiGpG 182 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIM--AGNVVTGEMVEELIL----SGADIVKVGIGPG 182 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEE--EecccCHHHHHHHHH----cCCCEEEEcccCC
Confidence 45666777764 7777777753 2345567788889988886555 333567777765544 333222322
Q ss_pred --------cCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 264 --------QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 264 --------eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
..+..-.+..+.+.++++ +..++||.+|--+.+..|+.+.+..|+ |.+.+-
T Consensus 183 SicttR~~~Gvg~pqltAv~~~a~aa-~~~~v~VIaDGGIr~~gDI~KALA~GA-d~VMlG 241 (343)
T TIGR01305 183 SVCTTRTKTGVGYPQLSAVIECADAA-HGLKGHIISDGGCTCPGDVAKAFGAGA-DFVMLG 241 (343)
T ss_pred CcccCceeCCCCcCHHHHHHHHHHHh-ccCCCeEEEcCCcCchhHHHHHHHcCC-CEEEEC
Confidence 222222566677766644 356899999999999999999999885 888764
No 414
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=30.08 E-value=3.1e+02 Score=26.25 Aligned_cols=74 Identities=26% Similarity=0.333 Sum_probs=50.4
Q ss_pred ChhHHHHHHHHHHhhCCCcEEEEeC-CCCC--CHHHHHHHHHHH-HhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCC
Q 015289 212 NLKEDIEVLRAIRAVHPDSSFILDA-NEGY--KPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV 287 (409)
Q Consensus 212 ~~~~d~~~l~avr~~~~~~~l~vDa-N~~w--~~~~A~~~~~~L-~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~i 287 (409)
++++-+...++||+..++.-++.|. .++| +.++|++.+.+| ++.+....-+|=-. +-.+..+.|. +.+|
T Consensus 60 tld~mi~h~~aV~Rga~~~~vv~DmPf~sy~~s~e~av~nA~rl~ke~GadaVKlEGg~--~~~~~i~~l~-----~~GI 132 (261)
T PF02548_consen 60 TLDEMIYHTKAVRRGAPNAFVVADMPFGSYQASPEQAVRNAGRLMKEAGADAVKLEGGA--EIAETIKALV-----DAGI 132 (261)
T ss_dssp -HHHHHHHHHHHHHH-TSSEEEEE--TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEBSG--GGHHHHHHHH-----HTT-
T ss_pred CHHHHHHHHHHHHhcCCCceEEecCCcccccCCHHHHHHHHHHHHHhcCCCEEEeccch--hHHHHHHHHH-----HCCC
Confidence 4566777889999988899999996 5677 799999987776 55776656788532 3345566665 3599
Q ss_pred eEEeC
Q 015289 288 SVAAD 292 (409)
Q Consensus 288 pIa~d 292 (409)
||+.-
T Consensus 133 PV~gH 137 (261)
T PF02548_consen 133 PVMGH 137 (261)
T ss_dssp -EEEE
T ss_pred cEEEE
Confidence 99973
No 415
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=30.08 E-value=5.7e+02 Score=25.56 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred CCC-cEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceee----------cCCCCCCHHHHHHhHHHhhccCCCeEEeCCCC
Q 015289 227 HPD-SSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE----------QPVHRDDWEGLGHVSHIAKDKFGVSVAADESC 295 (409)
Q Consensus 227 ~~~-~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE----------eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~ 295 (409)
+++ +-++.-...--+.++++++++.+++.+.. |+= --+..-..++++.|++ .++++|+|+.. ++
T Consensus 98 g~~~l~vIAGPCsIEs~eq~l~~A~~lk~~g~~--~~r~g~~kpRtsp~sf~G~g~~gl~~L~~-~~~e~Gl~~~t--ev 172 (352)
T PRK13396 98 ENHPVVVVAGPCSVENEEMIVETAKRVKAAGAK--FLRGGAYKPRTSPYAFQGHGESALELLAA-AREATGLGIIT--EV 172 (352)
T ss_pred CCCeEEEEEeCCcccCHHHHHHHHHHHHHcCCC--EEEeeeecCCCCCcccCCchHHHHHHHHH-HHHHcCCcEEE--ee
Q ss_pred CCHHHHHHHHHcCCCCEEEeCCCCCc--HHHHHHHHHHHHHcCCcEEEccCCc-hHHHHHHHHHHHccCCCCcee
Q 015289 296 RSLDDVKKIVKGNLADVINIKLAKVG--VLGALEIIEVVRASGLNLMIGGMVE-TRLAMGFAGHLSAGLGCFKFI 367 (409)
Q Consensus 296 ~~~~~~~~~i~~~a~div~~k~~~~G--i~~~~~i~~~A~~~gi~~~~~~~~e-s~i~~~~~~hlaaa~~~~~~~ 367 (409)
.+..++..+.+. +|++|+ | -..-..++..+.+.|.++.+..-.. +.--...++......+|....
T Consensus 173 ~d~~~v~~~~~~--~d~lqI-----ga~~~~n~~LL~~va~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~vi 240 (352)
T PRK13396 173 MDAADLEKIAEV--ADVIQV-----GARNMQNFSLLKKVGAQDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVI 240 (352)
T ss_pred CCHHHHHHHHhh--CCeEEE-----CcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEE
No 416
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=29.96 E-value=2.1e+02 Score=27.70 Aligned_cols=71 Identities=30% Similarity=0.340 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCCh----hHHHHHHHHHHhhCCCcEEEE------e---CCCCCCHHHHHHHHHH
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGKNL----KEDIEVLRAIRAVHPDSSFIL------D---ANEGYKPQEAVEVLEK 251 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~----~~d~~~l~avr~~~~~~~l~v------D---aN~~w~~~~A~~~~~~ 251 (409)
.+++++.+.++...+.|++.|-+--|.++ +.=.+.++.|++.++++.+.. | .+.+.+.+ +.++.
T Consensus 36 ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~---e~l~~ 112 (309)
T TIGR00423 36 LSLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEGLSIE---EVLKR 112 (309)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHH---HHHHH
Confidence 47889999998888899999998755323 333567888888777766541 1 23444443 45666
Q ss_pred HHhCCCC
Q 015289 252 LYEMGVT 258 (409)
Q Consensus 252 L~~~~l~ 258 (409)
|++.|+.
T Consensus 113 LkeAGl~ 119 (309)
T TIGR00423 113 LKKAGLD 119 (309)
T ss_pred HHHcCCC
Confidence 7776653
No 417
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=29.75 E-value=2.5e+02 Score=28.57 Aligned_cols=104 Identities=15% Similarity=0.137 Sum_probs=70.7
Q ss_pred CCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCC---CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHH--H
Q 015289 228 PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR---DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDV--K 302 (409)
Q Consensus 228 ~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~---~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~--~ 302 (409)
|.+.+.+|. .+.++|+++++.+.+++.. |+|==++- .-.+..++|++ ...+.+|-+|-.+.+.... +
T Consensus 173 p~L~vALD~---~~~~~A~~i~~~l~~~~~~--~iKvG~~L~~~~G~~iVk~Lr~---~~~~~~I~~DLK~~Di~~~vv~ 244 (391)
T PRK13307 173 PYLQVALDL---PDLEEVERVLSQLPKSDHI--IIEAGTPLIKKFGLEVISKIRE---VRPDAFIVADLKTLDTGNLEAR 244 (391)
T ss_pred ceEEEecCC---CCHHHHHHHHHhcccccce--EEEECHHHHHHhCHHHHHHHHH---hCCCCeEEEEecccChhhHHHH
Confidence 445566764 5789999999999987543 88854432 22333455543 1256899999998888765 3
Q ss_pred HHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEE
Q 015289 303 KIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMI 341 (409)
Q Consensus 303 ~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~ 341 (409)
.+.+.| +|.+.+-..- |.....+..+.++++|+.+.+
T Consensus 245 ~~a~aG-AD~vTVH~ea-~~~ti~~ai~~akk~GikvgV 281 (391)
T PRK13307 245 MAADAT-ADAVVISGLA-PISTIEKAIHEAQKTGIYSIL 281 (391)
T ss_pred HHHhcC-CCEEEEeccC-CHHHHHHHHHHHHHcCCEEEE
Confidence 445555 7998876532 333467788999999999887
No 418
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=29.61 E-value=3.1e+02 Score=25.59 Aligned_cols=61 Identities=20% Similarity=0.293 Sum_probs=42.2
Q ss_pred CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcC
Q 015289 269 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASG 336 (409)
Q Consensus 269 ~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~g 336 (409)
.+++.++++++ .+++||..+=-+.+.++++++++.| ++.+.+.-... ...-.+.++++.+|
T Consensus 61 ~~~~~i~~i~~----~~~ipv~~~GGi~s~~~~~~~l~~G-a~~Viigt~~l--~~p~~~~ei~~~~g 121 (253)
T PRK02083 61 TMLDVVERVAE----QVFIPLTVGGGIRSVEDARRLLRAG-ADKVSINSAAV--ANPELISEAADRFG 121 (253)
T ss_pred chHHHHHHHHH----hCCCCEEeeCCCCCHHHHHHHHHcC-CCEEEEChhHh--hCcHHHHHHHHHcC
Confidence 35666777764 5689999999999999999999976 68877753332 22223445566654
No 419
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=29.38 E-value=5.6e+02 Score=25.25 Aligned_cols=115 Identities=18% Similarity=0.271 Sum_probs=68.3
Q ss_pred HHHHHHHHHcCC--CeEEEecCC-ChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee-----
Q 015289 191 AELASKYRKQGF--TTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF----- 262 (409)
Q Consensus 191 ~~~~~~~~~~Gf--~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i----- 262 (409)
.+.+..+++.|. ..+=+.... .-..-++.++.+|+..|...++ -.|-. +.+.|.. |.+.|.....+
T Consensus 96 ~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi-~GnV~-t~e~a~~----l~~aGad~I~V~~G~G 169 (321)
T TIGR01306 96 YEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVI-AGNVG-TPEAVRE----LENAGADATKVGIGPG 169 (321)
T ss_pred HHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEE-EecCC-CHHHHHH----HHHcCcCEEEECCCCC
Confidence 455666777773 444444431 2245566788888877765444 34432 6666544 34444331111
Q ss_pred -------e--cCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 263 -------E--QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 263 -------E--eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
+ ..++...+..+.++++ ..++||.+|--+.+..|+.+++..| +|.+++-
T Consensus 170 ~~~~tr~~~g~g~~~~~l~ai~ev~~----a~~~pVIadGGIr~~~Di~KALa~G-Ad~Vmig 227 (321)
T TIGR01306 170 KVCITKIKTGFGTGGWQLAALRWCAK----AARKPIIADGGIRTHGDIAKSIRFG-ASMVMIG 227 (321)
T ss_pred ccccceeeeccCCCchHHHHHHHHHH----hcCCeEEEECCcCcHHHHHHHHHcC-CCEEeec
Confidence 1 1122123445555543 4579999999999999999999987 4888664
No 420
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=29.37 E-value=4.9e+02 Score=24.57 Aligned_cols=61 Identities=10% Similarity=0.118 Sum_probs=35.5
Q ss_pred CCCeEEeCCCCCCH------HHH-HHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEEccCCchHH
Q 015289 285 FGVSVAADESCRSL------DDV-KKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRL 349 (409)
Q Consensus 285 ~~ipIa~dEs~~~~------~~~-~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~~~~~es~i 349 (409)
+++|+. --+.+++ ..| .++.+.|.-.++.+|.. ..+..++...|+++|+...+-..-.|+.
T Consensus 86 ~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp---~ee~~~~~~~~~~~gl~~i~lv~P~T~~ 153 (256)
T TIGR00262 86 PNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLP---LEESGDLVEAAKKHGVKPIFLVAPNADD 153 (256)
T ss_pred CCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCC---hHHHHHHHHHHHHCCCcEEEEECCCCCH
Confidence 567765 3444444 443 44555564444666654 2566778888889998865433333443
No 421
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=29.27 E-value=4.4e+02 Score=26.05 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCCeEEEecCC-------------ChhHHHHHHHHHHhhC-CCcEEEEeCCCCCCHHHHHHHHHHHHhCC
Q 015289 191 AELASKYRKQGFTTLKLKVGK-------------NLKEDIEVLRAIRAVH-PDSSFILDANEGYKPQEAVEVLEKLYEMG 256 (409)
Q Consensus 191 ~~~~~~~~~~Gf~~~KiKvG~-------------~~~~d~~~l~avr~~~-~~~~l~vDaN~~w~~~~A~~~~~~L~~~~ 256 (409)
...+..+++.|++.+-+.+.. .+++-++-+++..++| ..++|=...-.+.+.++...+++-..+.+
T Consensus 101 ~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~~~ 180 (322)
T COG2896 101 ARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKERG 180 (322)
T ss_pred HHHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhhcC
Confidence 445555666666666666541 1223333344444443 23555555556666666666666666666
Q ss_pred CCCceee
Q 015289 257 VTPVLFE 263 (409)
Q Consensus 257 l~~~~iE 263 (409)
..+.+||
T Consensus 181 ~~lrfIE 187 (322)
T COG2896 181 AQLRFIE 187 (322)
T ss_pred CceEEEE
Confidence 5444665
No 422
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=29.25 E-value=4e+02 Score=27.88 Aligned_cols=41 Identities=15% Similarity=0.089 Sum_probs=31.2
Q ss_pred HHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEEccC
Q 015289 303 KIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 303 ~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
.+.+.| .+++.+++..+|+.....+.+.|+..++++..|-.
T Consensus 256 ~a~e~G-~~~~mv~~~~~G~~al~~l~~~~~~~~l~IhaHrA 296 (475)
T CHL00040 256 FARELG-VPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRA 296 (475)
T ss_pred HHHHcC-CceEEEeccccccchHHHHHHHhhhcCceEEeccc
Confidence 344555 58899999988977777778888888998877653
No 423
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=28.64 E-value=4.5e+02 Score=23.86 Aligned_cols=145 Identities=22% Similarity=0.320 Sum_probs=74.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEE----eCCC--CC-CHHHHHHHHHHHHhC
Q 015289 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFIL----DANE--GY-KPQEAVEVLEKLYEM 255 (409)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~v----DaN~--~w-~~~~A~~~~~~L~~~ 255 (409)
++.+.....+.++.+.+.|.+.+-+ +. -.+ ++.+|+. .++.+.. |... .+ +. -.+.++.+.+.
T Consensus 22 ~~~~~~~i~~~a~~~~~~G~~~~~~--~~--~~~---~~~i~~~-~~iPil~~~~~~~~~~~~~ig~--~~~~~~~a~~a 91 (219)
T cd04729 22 PLHSPEIMAAMALAAVQGGAVGIRA--NG--VED---IRAIRAR-VDLPIIGLIKRDYPDSEVYITP--TIEEVDALAAA 91 (219)
T ss_pred CcCcHHHHHHHHHHHHHCCCeEEEc--CC--HHH---HHHHHHh-CCCCEEEEEecCCCCCCceeCC--CHHHHHHHHHc
Confidence 3456677888888899999987553 22 233 4444543 2333321 3211 11 11 12355666666
Q ss_pred CCCCceeecCC---CC-CCHHHH-HHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC--------CCcH
Q 015289 256 GVTPVLFEQPV---HR-DDWEGL-GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA--------KVGV 322 (409)
Q Consensus 256 ~l~~~~iEeP~---~~-~d~~~~-~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~--------~~Gi 322 (409)
|....-+-.+. +. +....+ ++++ +..++++.. .+.+..+.....+.| +|++.+... ..+
T Consensus 92 Gad~I~~~~~~~~~p~~~~~~~~i~~~~----~~g~~~iiv--~v~t~~ea~~a~~~G-~d~i~~~~~g~t~~~~~~~~- 163 (219)
T cd04729 92 GADIIALDATDRPRPDGETLAELIKRIH----EEYNCLLMA--DISTLEEALNAAKLG-FDIIGTTLSGYTEETAKTED- 163 (219)
T ss_pred CCCEEEEeCCCCCCCCCcCHHHHHHHHH----HHhCCeEEE--ECCCHHHHHHHHHcC-CCEEEccCccccccccCCCC-
Confidence 65422222222 11 123222 2332 222488777 467888888888877 798855321 111
Q ss_pred HHHHHHHHHHHHcCCcEEEccCC
Q 015289 323 LGALEIIEVVRASGLNLMIGGMV 345 (409)
Q Consensus 323 ~~~~~i~~~A~~~gi~~~~~~~~ 345 (409)
...-.+..+.+..+++++..+-+
T Consensus 164 ~~~~~l~~i~~~~~ipvia~GGI 186 (219)
T cd04729 164 PDFELLKELRKALGIPVIAEGRI 186 (219)
T ss_pred CCHHHHHHHHHhcCCCEEEeCCC
Confidence 11122334455568999886654
No 424
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=28.42 E-value=2.5e+02 Score=26.46 Aligned_cols=66 Identities=20% Similarity=0.276 Sum_probs=48.3
Q ss_pred CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEE
Q 015289 269 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMI 341 (409)
Q Consensus 269 ~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~ 341 (409)
.+.+..+++.+ .+.+||-.|=-+.+.+++.++++.|. +.+.+=..- +...-.+.++++++|-++++
T Consensus 62 ~n~~~i~~i~~----~~~~~vQvGGGIRs~~~v~~ll~~G~-~rViiGt~a--v~~p~~v~~~~~~~g~rivv 127 (241)
T COG0106 62 RNLEAIKEILE----ATDVPVQVGGGIRSLEDVEALLDAGV-ARVIIGTAA--VKNPDLVKELCEEYGDRIVV 127 (241)
T ss_pred ccHHHHHHHHH----hCCCCEEeeCCcCCHHHHHHHHHCCC-CEEEEecce--ecCHHHHHHHHHHcCCcEEE
Confidence 35566677654 57889999999999999999999874 555442111 45667788999999977665
No 425
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=28.39 E-value=4.2e+02 Score=24.81 Aligned_cols=72 Identities=15% Similarity=0.150 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHHHh-CCCCCceeecCCCC---CCHHHHHHhHHHhhccCCC-eEEeCCCCCCHHHHHHHHHcCCCCEE
Q 015289 239 GYKPQEAVEVLEKLYE-MGVTPVLFEQPVHR---DDWEGLGHVSHIAKDKFGV-SVAADESCRSLDDVKKIVKGNLADVI 313 (409)
Q Consensus 239 ~w~~~~A~~~~~~L~~-~~l~~~~iEeP~~~---~d~~~~~~l~~~~~~~~~i-pIa~dEs~~~~~~~~~~i~~~a~div 313 (409)
.++.++...+....++ ++....|+|.=-.. .+.+-++++++ .+++ ||..|=-+.+.+++++++..| +|.+
T Consensus 136 ~~~~~~~~~~~~lA~~~~g~~~vYle~gs~~g~~~~~e~I~~v~~----~~~~~pvivGGGIrs~e~a~~~l~~G-AD~V 210 (232)
T PRK04169 136 PLDKPDIAAYAALAAEYLGMPIVYLEYGGGAGDPVPPEMVKAVKK----ALDITPLIYGGGIRSPEQARELMAAG-ADTI 210 (232)
T ss_pred CCChHHHHHHHHHHHHHcCCCeEEEECCCCCCCCCCHHHHHHHHH----hcCCCcEEEECCCCCHHHHHHHHHhC-CCEE
Confidence 3566665555444443 24444688843222 23555666654 4667 999999999999999989887 5887
Q ss_pred Ee
Q 015289 314 NI 315 (409)
Q Consensus 314 ~~ 315 (409)
.+
T Consensus 211 VV 212 (232)
T PRK04169 211 VV 212 (232)
T ss_pred EE
Confidence 65
No 426
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=28.27 E-value=6.1e+02 Score=25.30 Aligned_cols=119 Identities=20% Similarity=0.241 Sum_probs=73.4
Q ss_pred HHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhh-C-CCcEE------------EEeC----C-CCC-CHHHHHHHHH
Q 015289 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDSSF------------ILDA----N-EGY-KPQEAVEVLE 250 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~-~-~~~~l------------~vDa----N-~~w-~~~~A~~~~~ 250 (409)
+..++..+.||+.+=+... .++++.++..+.+.+. . -++.+ -++. + ..| ++++|.+|++
T Consensus 114 ~~~~~a~~~GftSVMiDgS~lp~eENI~~TkevVe~Ah~~gvsVEaElG~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~ 193 (345)
T cd00946 114 EYFKQHGEPLFSSHMLDLSEEPLEENIEICKKYLERMAKINMWLEMEIGITGGEEDGVDNSGVDNAELYTQPEDVWYVYE 193 (345)
T ss_pred HHHHHhccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcccCcccccccccccCCCHHHHHHHHH
Confidence 3344556789999988876 4678888887777542 1 11111 1111 1 236 5999999999
Q ss_pred HHHh--------------CCCCCcee-ecCCCCCCHHHHHHhHHHhhccC------CCeEEe-CCCCCCHHHHHHHHHcC
Q 015289 251 KLYE--------------MGVTPVLF-EQPVHRDDWEGLGHVSHIAKDKF------GVSVAA-DESCRSLDDVKKIVKGN 308 (409)
Q Consensus 251 ~L~~--------------~~l~~~~i-EeP~~~~d~~~~~~l~~~~~~~~------~ipIa~-dEs~~~~~~~~~~i~~~ 308 (409)
++.. .|+ |- .+| .-|++-++++++.+++.+ ++|+.+ |=|=...++++++++.|
T Consensus 194 ~t~~~tgvD~LAvaiGt~HG~---Y~~~~p--~L~~~~L~~I~~~i~~~~~~~~~~~ipLVLHGgSG~~~e~i~kai~~G 268 (345)
T cd00946 194 ALSKISPNFSIAAAFGNVHGV---YKPGNV--KLQPEILGEHQDYVREKLGLADDKPLYFVFHGGSGSTKEEIREAISYG 268 (345)
T ss_pred HhccCCCceeeeeeccccccC---CCCCCC--ccCHHHHHHHHHHHHHhhccccCCCCCEEEeCCCCCCHHHHHHHHHcC
Confidence 8621 222 33 333 357888888855333344 577774 55667778899999988
Q ss_pred CCCEEEeC
Q 015289 309 LADVINIK 316 (409)
Q Consensus 309 a~div~~k 316 (409)
. .=+|++
T Consensus 269 I-~KiNi~ 275 (345)
T cd00946 269 V-VKMNID 275 (345)
T ss_pred C-eeEEeC
Confidence 4 334554
No 427
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=28.22 E-value=4.3e+02 Score=23.48 Aligned_cols=114 Identities=12% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceee-----cC
Q 015289 191 AELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE-----QP 265 (409)
Q Consensus 191 ~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE-----eP 265 (409)
.+.++.+.+.|...+-+..+.. +...+.++.+++.+.+..+.++.+.. .+...++....+-..+. =++ +.
T Consensus 69 ~~~~~~~~~~gadgv~vh~~~~-~~~~~~~~~~~~~g~~~~~~~~~~t~--~e~~~~~~~~~d~i~~~--~~~~g~tg~~ 143 (210)
T TIGR01163 69 DRYIEDFAEAGADIITVHPEAS-EHIHRLLQLIKDLGAKAGIVLNPATP--LEFLEYVLPDVDLVLLM--SVNPGFGGQK 143 (210)
T ss_pred HHHHHHHHHcCCCEEEEccCCc-hhHHHHHHHHHHcCCcEEEEECCCCC--HHHHHHHHhhCCEEEEE--EEcCCCCccc
Q ss_pred CCCCCHHHHHHhHHHhhccCC-----CeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 266 VHRDDWEGLGHVSHIAKDKFG-----VSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 266 ~~~~d~~~~~~l~~~~~~~~~-----ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+.+..++.++++++ ..+ +||+.+=-+ +.+.+.++++.| +|++.+
T Consensus 144 ~~~~~~~~i~~i~~----~~~~~~~~~~i~v~GGI-~~env~~l~~~g-ad~iiv 192 (210)
T TIGR01163 144 FIPDTLEKIREVRK----MIDENGLSILIEVDGGV-NDDNARELAEAG-ADILVA 192 (210)
T ss_pred ccHHHHHHHHHHHH----HHHhcCCCceEEEECCc-CHHHHHHHHHcC-CCEEEE
No 428
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=28.09 E-value=3.7e+02 Score=25.99 Aligned_cols=62 Identities=21% Similarity=0.403 Sum_probs=35.4
Q ss_pred HHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEE
Q 015289 272 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMI 341 (409)
Q Consensus 272 ~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~ 341 (409)
++++.|.+ .++++++||.+ .+.+.+++....+ .+|++|+-.-. .+--.++..|.+.|.++.+
T Consensus 74 eGL~iL~~-vk~~~GlpvvT--eV~~~~~~~~~ae--~vDilQIgAr~---~rntdLL~a~~~t~kpV~l 135 (281)
T PRK12457 74 EGLRIFEE-VKARFGVPVIT--DVHEVEQAAPVAE--VADVLQVPAFL---ARQTDLVVAIAKTGKPVNI 135 (281)
T ss_pred HHHHHHHH-HHHHHCCceEE--EeCCHHHHHHHhh--hCeEEeeCchh---hchHHHHHHHhccCCeEEe
Confidence 34444543 34577888888 3566666665554 37888773221 1223445555566777765
No 429
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=28.08 E-value=4.8e+02 Score=24.00 Aligned_cols=101 Identities=15% Similarity=0.158 Sum_probs=58.8
Q ss_pred eEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCC------CCCHHHHHHHHHHHHhCCCCCceee--c--CCCCCCHHH
Q 015289 204 TLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANE------GYKPQEAVEVLEKLYEMGVTPVLFE--Q--PVHRDDWEG 273 (409)
Q Consensus 204 ~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~------~w~~~~A~~~~~~L~~~~l~~~~iE--e--P~~~~d~~~ 273 (409)
+-|+=+|...-++.+.++.+. ..+.+|+.+ +|. +...++.+.+++++..+.+.. . =...-|++.
T Consensus 102 a~rvvigT~a~~~p~~l~~~~-----~vvslD~~~g~v~~~g~~-~~~~~~~~~~~~~g~~ii~tdI~~dGt~~G~d~el 175 (221)
T TIGR00734 102 ASRVVVATETLDITELLRECY-----TVVSLDFKEKFLDASGLF-ESLEEVRDFLNSFDYGLIVLDIHSVGTMKGPNLEL 175 (221)
T ss_pred ceEEeecChhhCCHHHHHHhh-----hEEEEEeECCcccccccc-ccHHHHHHHHHhcCCEEEEEECCccccCCCCCHHH
Confidence 455666732223444444332 367788742 343 234445556665553322221 0 111236777
Q ss_pred HHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 274 ~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
++++++ .+.+||.++=-+.+++|+.++.+.| +|.+.+
T Consensus 176 i~~i~~----~~~~pvia~GGi~s~ed~~~l~~~G-a~~viv 212 (221)
T TIGR00734 176 LTKTLE----LSEHPVMLGGGISGVEDLELLKEMG-VSAVLV 212 (221)
T ss_pred HHHHHh----hCCCCEEEeCCCCCHHHHHHHHHCC-CCEEEE
Confidence 777764 5789999999999999999988776 566543
No 430
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=28.01 E-value=5.4e+02 Score=24.63 Aligned_cols=42 Identities=7% Similarity=0.063 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHh
Q 015289 213 LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE 254 (409)
Q Consensus 213 ~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~ 254 (409)
++.=.+.++++.+.|.+.--..|..+..++.+..++++.+.+
T Consensus 146 ~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~ 187 (280)
T cd07945 146 PDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVK 187 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHh
Confidence 444445556666667666666799999999999999998876
No 431
>PLN02858 fructose-bisphosphate aldolase
Probab=27.61 E-value=7.1e+02 Score=29.88 Aligned_cols=132 Identities=12% Similarity=0.143 Sum_probs=78.1
Q ss_pred eeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhh-CC-CcEE--------------EEeCC
Q 015289 175 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HP-DSSF--------------ILDAN 237 (409)
Q Consensus 175 ~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~-~~-~~~l--------------~vDaN 237 (409)
+||+...+...... +.+.++.+.||+.+=+.-. .++++.+++.+.+.+. .+ ++.+ ..+.+
T Consensus 1169 ~vpV~lHLDHg~~~---~~i~~ai~~Gf~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~~ 1245 (1378)
T PLN02858 1169 SVPITVHFDHGTSK---HELLEALELGFDSVMVDGSHLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEY 1245 (1378)
T ss_pred CCCEEEECCCCCCH---HHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccc
Confidence 45555444443322 3355667789999999876 4678888887777652 21 2111 11111
Q ss_pred -CCC-CHHHHHHHHHHHHh----------CCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEe-CCCCCCHHHHHHH
Q 015289 238 -EGY-KPQEAVEVLEKLYE----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKI 304 (409)
Q Consensus 238 -~~w-~~~~A~~~~~~L~~----------~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~ 304 (409)
..| ++++|.+|+++-.- +|+ |-.. -+.-|++-++++++... ..++|+.+ |=|=...++++++
T Consensus 1246 ~~~~T~p~~a~~Fv~~TgvD~LAvaiGt~HG~---Y~~~-~p~l~~~~l~~i~~~~~-~~~vpLVlHGgSG~~~~~~~~a 1320 (1378)
T PLN02858 1246 EAKLTDVDQAKEFIDETGIDALAVCIGNVHGK---YPAS-GPNLRLDLLKELRALSS-KKGVLLVLHGASGLPESLIKEC 1320 (1378)
T ss_pred ccCCCCHHHHHHHHHhcCCcEEeeeccccccc---CCCC-CCccCHHHHHHHHHHhc-CCCCcEEEeCCCCCCHHHHHHH
Confidence 125 48999999886321 221 3221 24458888898876211 12688885 4566667789999
Q ss_pred HHcCCCCEEEe
Q 015289 305 VKGNLADVINI 315 (409)
Q Consensus 305 i~~~a~div~~ 315 (409)
++.|... +|+
T Consensus 1321 i~~Gi~K-iNi 1330 (1378)
T PLN02858 1321 IENGVRK-FNV 1330 (1378)
T ss_pred HHcCCeE-EEe
Confidence 9988543 344
No 432
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=27.60 E-value=5.2e+02 Score=24.24 Aligned_cols=63 Identities=21% Similarity=0.333 Sum_probs=49.1
Q ss_pred cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHH-------HHHHHHHHHHcCCcEEEccCCchH
Q 015289 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLG-------ALEIIEVVRASGLNLMIGGMVETR 348 (409)
Q Consensus 284 ~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~-------~~~i~~~A~~~gi~~~~~~~~es~ 348 (409)
..|+.||.|.-=.+...+..+.+. .+|++-+|.+.+. +.. ...++.+|++.|+.++.-+- ||.
T Consensus 147 ~~G~~ialDDFGtG~ssl~~L~~l-~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaEGV-Et~ 217 (256)
T COG2200 147 ELGVRIALDDFGTGYSSLSYLKRL-PPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEGV-ETE 217 (256)
T ss_pred HCCCeEEEECCCCCHHHHHHHhhC-CCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEeec-CCH
Confidence 568999999988888888777664 5899999977664 321 34578999999999998764 655
No 433
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=27.57 E-value=4.3e+02 Score=25.77 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=44.7
Q ss_pred HHHHHHHcCCCeEEEecC-------------CChhHHHHHHHHHHhhCC-CcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 015289 193 LASKYRKQGFTTLKLKVG-------------KNLKEDIEVLRAIRAVHP-DSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (409)
Q Consensus 193 ~~~~~~~~Gf~~~KiKvG-------------~~~~~d~~~l~avr~~~~-~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (409)
.++++.+.|...+-+.+. ..+++-++.++++++.+- .+.+..=...+.+.++..++++.+.+.++.
T Consensus 106 ~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~ 185 (329)
T PRK13361 106 FAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLD 185 (329)
T ss_pred HHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCe
Confidence 455566677777776653 123444555666666542 444432233456778888888888888876
Q ss_pred CceeecCCC
Q 015289 259 PVLFEQPVH 267 (409)
Q Consensus 259 ~~~iEeP~~ 267 (409)
..++| .+|
T Consensus 186 ~~~ie-~mP 193 (329)
T PRK13361 186 IAFIE-EMP 193 (329)
T ss_pred EEEEe-ccc
Confidence 44555 444
No 434
>PRK07094 biotin synthase; Provisional
Probab=27.54 E-value=5.7e+02 Score=24.70 Aligned_cols=67 Identities=24% Similarity=0.329 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCCh----hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKNL----KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~----~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (409)
+++++.+.++.+.+.|++.|-+--|.+. +.=.+.++.+++. +++.+.+..+ ..+. +.++.|++.|+.
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~-~~l~i~~~~g-~~~~----e~l~~Lk~aG~~ 141 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKE-LDVAITLSLG-ERSY----EEYKAWKEAGAD 141 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHcc-CCceEEEecC-CCCH----HHHHHHHHcCCC
Confidence 6888888888888899999988655322 2223445666664 4555554332 2333 345566666653
No 435
>PRK15108 biotin synthase; Provisional
Probab=27.30 E-value=4.9e+02 Score=25.77 Aligned_cols=144 Identities=14% Similarity=0.186 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecC-CCh-hHHH----HHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVG-KNL-KEDI----EVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG-~~~-~~d~----~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (409)
.+++++.+.++...+.|++.|=+-.+ .++ ..+. +.++.+++.+ +.+. -.|+..+.+++ ++|++.|+.
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~--i~v~-~s~G~ls~e~l----~~LkeAGld 148 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMG--LETC-MTLGTLSESQA----QRLANAGLD 148 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCC--CEEE-EeCCcCCHHHH----HHHHHcCCC
Confidence 47899999999888899999855433 222 3333 3455555533 4443 56887885554 344444432
Q ss_pred ---------CceeecCCCCCCHHHHHHhHHHhhccCCCe------EEeCCCCCCHHHHHHHH-HcC-CCCEEE-----e-
Q 015289 259 ---------PVLFEQPVHRDDWEGLGHVSHIAKDKFGVS------VAADESCRSLDDVKKIV-KGN-LADVIN-----I- 315 (409)
Q Consensus 259 ---------~~~iEeP~~~~d~~~~~~l~~~~~~~~~ip------Ia~dEs~~~~~~~~~~i-~~~-a~div~-----~- 315 (409)
+..+.+-++.++++..-+..+.++ +.|++ +.+||+....-+....+ +.+ ..+.+- |
T Consensus 149 ~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~-~~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~ 227 (345)
T PRK15108 149 YYNHNLDTSPEFYGNIITTRTYQERLDTLEKVR-DAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKV 227 (345)
T ss_pred EEeeccccChHhcCCCCCCCCHHHHHHHHHHHH-HcCCceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeCCccCC
Confidence 124455555555554333222221 23444 44677765555433323 231 223332 2
Q ss_pred CCCCC------cHHHHHHHHHHHHHcC
Q 015289 316 KLAKV------GVLGALEIIEVVRASG 336 (409)
Q Consensus 316 k~~~~------Gi~~~~~i~~~A~~~g 336 (409)
+-+.. ...+.++++++++-.-
T Consensus 228 ~gTpl~~~~~~~~~e~lr~iAi~Rl~l 254 (345)
T PRK15108 228 KGTPLADNDDVDAFDFIRTIAVARIMM 254 (345)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHC
Confidence 11111 2446678777777653
No 436
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=27.29 E-value=4.2e+02 Score=24.74 Aligned_cols=20 Identities=20% Similarity=0.405 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCcEEEccC
Q 015289 325 ALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 325 ~~~i~~~A~~~gi~~~~~~~ 344 (409)
..+++++|+++|+.+.+..+
T Consensus 131 l~~l~~~a~~~gv~l~iE~~ 150 (275)
T PRK09856 131 LSELCEYAENIGMDLILEPL 150 (275)
T ss_pred HHHHHHHHHHcCCEEEEecC
Confidence 46789999999999998764
No 437
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=27.27 E-value=4.4e+02 Score=25.65 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=42.5
Q ss_pred HHHHHHHcCCCeEEEecC--------------CChhHHHHHHHHHHhhCCC-cEEEEeCCCCCCHHHHHHHHHHHHhCCC
Q 015289 193 LASKYRKQGFTTLKLKVG--------------KNLKEDIEVLRAIRAVHPD-SSFILDANEGYKPQEAVEVLEKLYEMGV 257 (409)
Q Consensus 193 ~~~~~~~~Gf~~~KiKvG--------------~~~~~d~~~l~avr~~~~~-~~l~vDaN~~w~~~~A~~~~~~L~~~~l 257 (409)
.++.+.+.|...+-+.+. .+.++-++.++.+++.+-. +.+.+-.-.+.+.++..++++.+.+.++
T Consensus 104 ~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~gv 183 (334)
T TIGR02666 104 HAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERGV 183 (334)
T ss_pred HHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCC
Confidence 344555567666665543 1334445566666666533 5554433345677777788888888877
Q ss_pred CCceeec
Q 015289 258 TPVLFEQ 264 (409)
Q Consensus 258 ~~~~iEe 264 (409)
.+.++|-
T Consensus 184 ~~~~ie~ 190 (334)
T TIGR02666 184 TLRFIEL 190 (334)
T ss_pred eEEEEec
Confidence 6556653
No 438
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=26.99 E-value=4.8e+02 Score=24.22 Aligned_cols=105 Identities=20% Similarity=0.210 Sum_probs=68.4
Q ss_pred CCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHH--HHHHHH
Q 015289 228 PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLD--DVKKIV 305 (409)
Q Consensus 228 ~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~--~~~~~i 305 (409)
|-..+.+|- .|.++|++.++.+.++ + .|||==++----+|++.++.......+-+|.+|--..+.- ..+...
T Consensus 4 p~LQvALD~---~~l~~Ai~~a~~v~~~-~--diiEvGTpLik~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~ 77 (217)
T COG0269 4 PLLQVALDL---LDLEEAIEIAEEVADY-V--DIIEVGTPLIKAEGMRAVRALRELFPDKIIVADLKTADAGAIEARMAF 77 (217)
T ss_pred cceEeeecc---cCHHHHHHHHHHhhhc-c--eEEEeCcHHHHHhhHHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHH
Confidence 345566663 5789999999999998 5 4999776633334444443311123567888887766554 456666
Q ss_pred HcCCCCEEEeCCCCCc---HHHHHHHHHHHHHcCCcEEEcc
Q 015289 306 KGNLADVINIKLAKVG---VLGALEIIEVVRASGLNLMIGG 343 (409)
Q Consensus 306 ~~~a~div~~k~~~~G---i~~~~~i~~~A~~~gi~~~~~~ 343 (409)
+.| +|++-+ +| ..-..+.++.|+++|+.+++--
T Consensus 78 ~aG-Ad~~tV----~g~A~~~TI~~~i~~A~~~~~~v~iDl 113 (217)
T COG0269 78 EAG-ADWVTV----LGAADDATIKKAIKVAKEYGKEVQIDL 113 (217)
T ss_pred HcC-CCEEEE----EecCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 666 588654 24 2334567789999999988743
No 439
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=26.91 E-value=3.5e+02 Score=29.77 Aligned_cols=93 Identities=11% Similarity=0.150 Sum_probs=67.8
Q ss_pred HHHHHHHHhCCCCC--ceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHH
Q 015289 246 VEVLEKLYEMGVTP--VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL 323 (409)
Q Consensus 246 ~~~~~~L~~~~l~~--~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~ 323 (409)
.++++..++.|... ..-|+.+-..+++.++++++ .+.+||---+-+.+..++.+....| +|.|.+=+.-++-.
T Consensus 73 ~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~----~v~~PvLrKDFIid~~QI~ea~~~G-ADavLLI~~~L~~~ 147 (695)
T PRK13802 73 AALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRA----AVHIPVLRKDFIVTDYQIWEARAHG-ADLVLLIVAALDDA 147 (695)
T ss_pred HHHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHH----hCCCCEEeccccCCHHHHHHHHHcC-CCEeehhHhhcCHH
Confidence 34555566654321 23366666667888888764 6789999999999999998888887 49987755555544
Q ss_pred HHHHHHHHHHHcCCcEEEcc
Q 015289 324 GALEIIEVVRASGLNLMIGG 343 (409)
Q Consensus 324 ~~~~i~~~A~~~gi~~~~~~ 343 (409)
+..+++++|++.|+.+.+-.
T Consensus 148 ~l~~l~~~a~~lGme~LvEv 167 (695)
T PRK13802 148 QLKHLLDLAHELGMTVLVET 167 (695)
T ss_pred HHHHHHHHHHHcCCeEEEEe
Confidence 67889999999999987533
No 440
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=26.70 E-value=6.5e+02 Score=25.10 Aligned_cols=122 Identities=14% Similarity=0.118 Sum_probs=73.5
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhCCCC-------C--ceeecCCCC----------------CCHHHHHHhHHHh--hc
Q 015289 231 SFILDANEGYKPQEAVEVLEKLYEMGVT-------P--VLFEQPVHR----------------DDWEGLGHVSHIA--KD 283 (409)
Q Consensus 231 ~l~vDaN~~w~~~~A~~~~~~L~~~~l~-------~--~~iEeP~~~----------------~d~~~~~~l~~~~--~~ 283 (409)
-+++-.-.--+.++|++++++|++.+-. + .|+|-|-.. +-.+|++.+++.+ -.
T Consensus 50 lvIvGPCSIhd~~~a~eyA~rLk~l~~~~~d~l~ivmR~y~eKPRTt~GWKGli~DP~ld~sf~i~~GL~~~R~ll~~i~ 129 (344)
T TIGR00034 50 LVVIGPCSIHDPEAAIEYATRLKALREELKDDLEIVMRVYFEKPRTTVGWKGLINDPDLNGSFRINHGLRIARKLLLDLV 129 (344)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHHhhhcceEEEEEeccccCCCccccccccCCCCcCCCCCHHHHHHHHHHHHHHHH
Confidence 3444445556789999999888875421 0 378988332 1135666555432 14
Q ss_pred cCCCeEEeCCC-CCCHHHHHHHHHcCCCCEEEeCCCCCc--HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHcc
Q 015289 284 KFGVSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG--VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 360 (409)
Q Consensus 284 ~~~ipIa~dEs-~~~~~~~~~~i~~~a~div~~k~~~~G--i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa 360 (409)
++++|++..-. ..+++-+.+++. +. .+| -++..-..++|...++++.+-..+...+..+..+-.||.
T Consensus 130 ~~GlPvatE~ld~~~~~y~~Dlis-----w~-----aIGARt~esq~hRelaSgl~~PVgfKngt~g~i~~al~Ai~aA~ 199 (344)
T TIGR00034 130 NLGLPIAGEFLDMISPQYLADLFS-----WG-----AIGARTTESQVHRELASGLSCPVGFKNGTDGNLQVAIDAIRAAA 199 (344)
T ss_pred HhCCCeEEEecCcCcHHHHHHHHh-----hc-----cccCccccCHHHHHHHhCCCCceEecCCCCCCHHHHHHHHHHHh
Confidence 67999997432 223333344432 22 335 345555678888899999988777777777666555554
Q ss_pred CC
Q 015289 361 LG 362 (409)
Q Consensus 361 ~~ 362 (409)
.|
T Consensus 200 ~~ 201 (344)
T TIGR00034 200 AP 201 (344)
T ss_pred CC
Confidence 33
No 441
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=26.57 E-value=5.7e+02 Score=24.37 Aligned_cols=138 Identities=16% Similarity=0.139 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecC------CChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVG------KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG------~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (409)
+.+.+.+.++.+.+.|.+.+=+--. -..++=.+.++.+++. .+++.+++=+.. -+.+++++.++..++.|..
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~~i~~a~~a~~~G~d 98 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAEAIELTKFAEKAGAD 98 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHHHHHHHHHHHHcCCC
Confidence 5566777888888889888765322 1233444456666665 455777754443 4678889999999998865
Q ss_pred CceeecCCC--CCCHHHHHHhHHHhhccCCCeEEeCCC------CCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHH
Q 015289 259 PVLFEQPVH--RDDWEGLGHVSHIAKDKFGVSVAADES------CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEI 328 (409)
Q Consensus 259 ~~~iEeP~~--~~d~~~~~~l~~~~~~~~~ipIa~dEs------~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i 328 (409)
-..+=-|.- ..+-+-++...+ +.+.+++||..=.. ..+...+.++.+ .-.++-+|-+- | +....++
T Consensus 99 ~v~~~pP~~~~~~~~~i~~~~~~-ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~--~p~v~giK~s~-~d~~~~~~~ 173 (292)
T PRK03170 99 GALVVTPYYNKPTQEGLYQHFKA-IAEATDLPIILYNVPGRTGVDILPETVARLAE--HPNIVGIKEAT-GDLERVSEL 173 (292)
T ss_pred EEEECCCcCCCCCHHHHHHHHHH-HHhcCCCCEEEEECccccCCCCCHHHHHHHHc--CCCEEEEEECC-CCHHHHHHH
Confidence 334444532 222122222222 12356788875321 234556666643 24666677543 3 4444443
No 442
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=26.37 E-value=4.4e+02 Score=25.96 Aligned_cols=71 Identities=28% Similarity=0.319 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCC----hhHHHHHHHHHHhhCCCcEEEEeC---------CCCCCHHHHHHHHHH
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGKN----LKEDIEVLRAIRAVHPDSSFILDA---------NEGYKPQEAVEVLEK 251 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~----~~~d~~~l~avr~~~~~~~l~vDa---------N~~w~~~~A~~~~~~ 251 (409)
.+++++.+.++.+.+.|.+.|-+--|.+ .+.-.+.++.|++.++++.+..-. +.+... .+.+++
T Consensus 70 ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~---~e~l~~ 146 (343)
T TIGR03551 70 LSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSV---EEALKR 146 (343)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCH---HHHHHH
Confidence 4889999999999999999999885522 233356788888888877654321 222222 246677
Q ss_pred HHhCCCC
Q 015289 252 LYEMGVT 258 (409)
Q Consensus 252 L~~~~l~ 258 (409)
|++.|+.
T Consensus 147 LkeAGl~ 153 (343)
T TIGR03551 147 LKEAGLD 153 (343)
T ss_pred HHHhCcc
Confidence 8887775
No 443
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=26.33 E-value=5.2e+02 Score=23.83 Aligned_cols=131 Identities=14% Similarity=0.236 Sum_probs=78.3
Q ss_pred eeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhC-
Q 015289 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEM- 255 (409)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~- 255 (409)
+....+-..+|+...+ .+.+.|-..+-+++-.. ..-.+.++.+|+.|-...+.+..+. ..+....+++.++-.
T Consensus 60 ~~dvHLMv~~p~~~i~---~~~~~gad~i~~H~Ea~-~~~~~~l~~ik~~g~k~GlalnP~T--p~~~i~~~l~~~D~vl 133 (220)
T PRK08883 60 PIDVHLMVKPVDRIIP---DFAKAGASMITFHVEAS-EHVDRTLQLIKEHGCQAGVVLNPAT--PLHHLEYIMDKVDLIL 133 (220)
T ss_pred CEEEEeccCCHHHHHH---HHHHhCCCEEEEcccCc-ccHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHhCCeEE
Confidence 3344444456776654 45667988888888631 1223567888998877778877765 444444455544421
Q ss_pred --CCCCceeecCCCCCCHHHHHHhHHHhh-ccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 256 --GVTPVLFEQPVHRDDWEGLGHVSHIAK-DKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 256 --~l~~~~iEeP~~~~d~~~~~~l~~~~~-~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
.++|-+=-|.+-+..++.++++++... +..++||..|=.+. .+.+.++.+.| +|++.+
T Consensus 134 vMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aG-Ad~vVv 194 (220)
T PRK08883 134 LMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAG-ADMFVA 194 (220)
T ss_pred EEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcC-CCEEEE
Confidence 111223345555555556666654321 12358998887766 77888889888 477654
No 444
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=26.28 E-value=6e+02 Score=25.69 Aligned_cols=81 Identities=19% Similarity=0.178 Sum_probs=47.1
Q ss_pred HHHhHHHhhccCC-CeEEeCCCCC-CHHHHHHHHHcCCCCEEEeCCCC-------------CcH-H-HH-HHHHHHHHHc
Q 015289 274 LGHVSHIAKDKFG-VSVAADESCR-SLDDVKKIVKGNLADVINIKLAK-------------VGV-L-GA-LEIIEVVRAS 335 (409)
Q Consensus 274 ~~~l~~~~~~~~~-ipIa~dEs~~-~~~~~~~~i~~~a~div~~k~~~-------------~Gi-~-~~-~~i~~~A~~~ 335 (409)
+.++-+.+|+..+ .||..-+... +..++...++.+.+|++.++-.- +|+ + .+ ..+.+.+.+.
T Consensus 201 l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~ 280 (392)
T cd02808 201 LAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKN 280 (392)
T ss_pred HHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHc
Confidence 3333333444555 7877766655 77788888887778998887653 241 1 22 2344445444
Q ss_pred ----CCcEEEccCCchHHHHHHH
Q 015289 336 ----GLNLMIGGMVETRLAMGFA 354 (409)
Q Consensus 336 ----gi~~~~~~~~es~i~~~~~ 354 (409)
.++++..+-+-++.-...+
T Consensus 281 ~~~~~i~viasGGI~~g~Dv~ka 303 (392)
T cd02808 281 GLRDRVSLIASGGLRTGADVAKA 303 (392)
T ss_pred CCCCCCeEEEECCCCCHHHHHHH
Confidence 5778776655555444333
No 445
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=25.97 E-value=2.6e+02 Score=25.55 Aligned_cols=56 Identities=20% Similarity=0.376 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCC-CCHHHHHHHHHHH
Q 015289 189 EAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEG-YKPQEAVEVLEKL 252 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~-w~~~~A~~~~~~L 252 (409)
++.+.++++.+.|+..|-+. |...++.+|+.+|++++.+|..-. |+..++ ++++.+
T Consensus 3 ~~~~~l~~l~~~g~dgi~v~-------~~g~~~~~k~~~~~~~i~~~~~~nv~N~~s~-~~~~~~ 59 (233)
T PF01136_consen 3 ELEKYLDKLKELGVDGILVS-------NPGLLELLKELGPDLKIIADYSLNVFNSESA-RFLKEL 59 (233)
T ss_pred HHHHHHHHHHhCCCCEEEEc-------CHHHHHHHHHhCCCCcEEEecCccCCCHHHH-HHHHHc
Confidence 34555666777888886543 677888999999999999999865 566554 454433
No 446
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=25.90 E-value=6.7e+02 Score=25.00 Aligned_cols=74 Identities=15% Similarity=0.160 Sum_probs=46.9
Q ss_pred CHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCC--CCC---cHHHHHHHHHHHHHc--CCcEEEc
Q 015289 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL--AKV---GVLGALEIIEVVRAS--GLNLMIG 342 (409)
Q Consensus 270 d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~--~~~---Gi~~~~~i~~~A~~~--gi~~~~~ 342 (409)
+|+.++++++ ..++||..-+ +.+.++++.+.+.| +|.+.+-- .+. |......+.+++++. .++++..
T Consensus 209 ~~~~l~~lr~----~~~~PvivKg-v~~~~dA~~a~~~G-~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~d 282 (351)
T cd04737 209 SPADIEFIAK----ISGLPVIVKG-IQSPEDADVAINAG-ADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFD 282 (351)
T ss_pred CHHHHHHHHH----HhCCcEEEec-CCCHHHHHHHHHcC-CCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEE
Confidence 4566666654 5689999876 57888999888877 68887631 111 222223344555555 4888887
Q ss_pred cCCchHH
Q 015289 343 GMVETRL 349 (409)
Q Consensus 343 ~~~es~i 349 (409)
+-+.++.
T Consensus 283 GGIr~g~ 289 (351)
T cd04737 283 SGVRRGE 289 (351)
T ss_pred CCCCCHH
Confidence 7655543
No 447
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=25.87 E-value=5.7e+02 Score=24.88 Aligned_cols=146 Identities=18% Similarity=0.257 Sum_probs=78.6
Q ss_pred CCchHHHhC-CCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCC
Q 015289 162 SMPLWRLFG-GVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGY 240 (409)
Q Consensus 162 g~Pl~~LLG-g~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w 240 (409)
|-++..+-+ |..+.|... ...+..+.+.+. .|...+.+--|..- .-...+.++- .++--+.+|.|..|
T Consensus 43 GYSvCD~C~~Grldei~kP------pI~~F~~dlaeF--lg~D~~R~t~GARe-~KfavMhal~--~~gd~vV~D~~aHY 111 (382)
T COG1103 43 GYSVCDFCLEGRLDEITKP------PIKDFLEDLAEF--LGMDEVRVTAGARE-AKFAVMHALC--KEGDWVVVDSLAHY 111 (382)
T ss_pred CcchhhhhccCccccccCC------cHHHHHHHHHHH--hCCceeeecccchh-hHHHHHHHhc--cCCCEEEEcCcchH
Confidence 556666653 544432111 112333333333 47788887777421 1122233332 35567899999999
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCC-----CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVH-----RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~-----~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
|.--|.+ ..+++ -.|=|=. .-+.++|+++-.....+.+-|+++- + .-.+
T Consensus 112 ttyvAAE------ragl~--v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~la--l----------------lTh~ 165 (382)
T COG1103 112 TTYVAAE------RAGLN--VAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALA--L----------------LTHV 165 (382)
T ss_pred HHHHHHH------hcCCe--EEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEE--E----------------Eecc
Confidence 8644432 24443 4455522 1245666665543333333333320 0 0112
Q ss_pred CCCCCc-HHHHHHHHHHHHHcCCcEEEccCC
Q 015289 316 KLAKVG-VLGALEIIEVVRASGLNLMIGGMV 345 (409)
Q Consensus 316 k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~ 345 (409)
|- .-| +..+.+++.+|+++|+|+...|..
T Consensus 166 Dg-~YGNl~Dakkva~ic~e~gvPlllN~AY 195 (382)
T COG1103 166 DG-EYGNLADAKKVAKICREYGVPLLLNCAY 195 (382)
T ss_pred CC-CcCCchhhHHHHHHHHHcCCceEeecce
Confidence 22 337 899999999999999999887654
No 448
>PRK00208 thiG thiazole synthase; Reviewed
Probab=25.85 E-value=5.8e+02 Score=24.22 Aligned_cols=152 Identities=13% Similarity=0.133 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCC-ChhH-HHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceee
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGK-NLKE-DIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 263 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~-~~~~-d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE 263 (409)
+++.+.+. +.+.|-..+-+-+-+ +... .-..++.|.. .++.++--.++..|.+||++.++..++..- ..||-
T Consensus 22 s~~~~~~a---i~asg~~ivTvalrR~~~~~~~~~~~~~i~~--~~~~~lpNTaG~~ta~eAv~~a~lare~~~-~~~iK 95 (250)
T PRK00208 22 SPQVMQEA---IEASGAEIVTVALRRVNLGQGGDNLLDLLPP--LGVTLLPNTAGCRTAEEAVRTARLAREALG-TNWIK 95 (250)
T ss_pred CHHHHHHH---HHHhCCCeEEEEEEeecCCCCcchHHhhccc--cCCEECCCCCCCCCHHHHHHHHHHHHHHhC-CCeEE
Confidence 55555443 345677777776642 1111 1122333322 356677777888999999998888777531 23663
Q ss_pred cCCC-------CCCHHHHHHhHHHhhc-cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe--CCCCC--cHHHHHHHHHH
Q 015289 264 QPVH-------RDDWEGLGHVSHIAKD-KFGVSVAADESCRSLDDVKKIVKGNLADVINI--KLAKV--GVLGALEIIEV 331 (409)
Q Consensus 264 eP~~-------~~d~~~~~~l~~~~~~-~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~--k~~~~--Gi~~~~~i~~~ 331 (409)
==+- +|..+.++.-....++ -.-+|+|. .++...+++.+.| ++++.+ .+--. |+...-.+..+
T Consensus 96 lEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~----~d~~~ak~l~~~G-~~~vmPlg~pIGsg~gi~~~~~i~~i 170 (250)
T PRK00208 96 LEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCT----DDPVLAKRLEEAG-CAAVMPLGAPIGSGLGLLNPYNLRII 170 (250)
T ss_pred EEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeC----CCHHHHHHHHHcC-CCEeCCCCcCCCCCCCCCCHHHHHHH
Confidence 2122 2222222222111111 22356766 4666677777775 788866 22212 33222224444
Q ss_pred HHHcCCcEEEccCCchH
Q 015289 332 VRASGLNLMIGGMVETR 348 (409)
Q Consensus 332 A~~~gi~~~~~~~~es~ 348 (409)
.+..+++++..+-+.++
T Consensus 171 ~e~~~vpVIveaGI~tp 187 (250)
T PRK00208 171 IEQADVPVIVDAGIGTP 187 (250)
T ss_pred HHhcCCeEEEeCCCCCH
Confidence 45568999887655544
No 449
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=25.84 E-value=1.3e+02 Score=30.89 Aligned_cols=135 Identities=19% Similarity=0.269 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEE--EecCCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCc
Q 015289 184 IVSPAEAAELASKYRKQGFTTLK--LKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV 260 (409)
Q Consensus 184 ~~~~~~~~~~~~~~~~~Gf~~~K--iKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~ 260 (409)
+.+|+....++++..++=|.+=| +=++ .........+..+ .++-.+.+|=|+.=|.-.|+.+ .++.|.
T Consensus 61 L~~p~G~I~eAe~~aA~~fGAd~t~flvn---GsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~alil------~ga~Pv 131 (417)
T PF01276_consen 61 LHDPEGIIKEAEELAARAFGADKTFFLVN---GSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNALIL------SGAIPV 131 (417)
T ss_dssp TTTTBTHHHHHHHHHHHHHTESEEEEESS---HHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHHHH------HTEEEE
T ss_pred ccCCccHHHHHHHHHHHhcCCCeEEEEec---CchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHH------cCCeEE
Confidence 34566666666655554343333 3333 2334444455554 5788899999998776555443 344566
Q ss_pred eeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcC--CCC---EEEeCCCCCc-HHHHHHHHHHHHH
Q 015289 261 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN--LAD---VINIKLAKVG-VLGALEIIEVVRA 334 (409)
Q Consensus 261 ~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~--a~d---iv~~k~~~~G-i~~~~~i~~~A~~ 334 (409)
||. |. .+ ..+++-..+-...+.+++++.+++. +-. ++..-+++-| .....+|+++|.+
T Consensus 132 yi~-p~-~~--------------~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY~Gv~~di~~I~~~~h~ 195 (417)
T PF01276_consen 132 YIP-PE-DN--------------EYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTYYGVCYDIKEIAEICHK 195 (417)
T ss_dssp EEE-EE-E---------------TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-TTSEEE-HHHHHHHHCC
T ss_pred Eec-CC-cc--------------ccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCCCeEEECHHHHHHHhcc
Confidence 885 33 21 2355555555556678888888754 223 6778899999 7799999999999
Q ss_pred cCCcEEEcc
Q 015289 335 SGLNLMIGG 343 (409)
Q Consensus 335 ~gi~~~~~~ 343 (409)
+|+++.+-.
T Consensus 196 ~~~~llvDE 204 (417)
T PF01276_consen 196 HGIPLLVDE 204 (417)
T ss_dssp TECEEEEE-
T ss_pred cCCEEEEEc
Confidence 999998854
No 450
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=25.83 E-value=3.5e+02 Score=27.51 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccC
Q 015289 296 RSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL 361 (409)
Q Consensus 296 ~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~ 361 (409)
.+..-++.+++.| +++ +|.+...-. ..+....|+++|+.+++++-+..++....+.|.+.-+
T Consensus 80 ~~~~i~ka~i~~g-v~y--vDts~~~~~-~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~ 141 (389)
T COG1748 80 VDLTILKACIKTG-VDY--VDTSYYEEP-PWKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKEL 141 (389)
T ss_pred hhHHHHHHHHHhC-CCE--EEcccCCch-hhhhhHHHHHcCeEEEcccCcCcchHHHHHHHHHHHh
Confidence 3333344555554 455 344443311 2778889999999999999888888888888777644
No 451
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=25.55 E-value=5.1e+02 Score=24.55 Aligned_cols=71 Identities=25% Similarity=0.331 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEeCC-CCC--CHHHHHHHHHH-HHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCe
Q 015289 213 LKEDIEVLRAIRAVHPDSSFILDAN-EGY--KPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288 (409)
Q Consensus 213 ~~~d~~~l~avr~~~~~~~l~vDaN-~~w--~~~~A~~~~~~-L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ip 288 (409)
+++-+..+++|++..+..-+.+|.. ++| +++++.+...+ +++.|..-..||+=. +....++. ++ ..++|
T Consensus 57 l~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~~-----~~~~~I~a-l~-~agip 129 (254)
T cd06557 57 LDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAARLMKEAGADAVKLEGGA-----EVAETIRA-LV-DAGIP 129 (254)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCcH-----HHHHHHHH-HH-HcCCC
Confidence 4556667777777655444889996 667 48888777444 555776556889731 22233332 22 45788
Q ss_pred EE
Q 015289 289 VA 290 (409)
Q Consensus 289 Ia 290 (409)
++
T Consensus 130 V~ 131 (254)
T cd06557 130 VM 131 (254)
T ss_pred ee
Confidence 88
No 452
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=25.50 E-value=5.8e+02 Score=24.13 Aligned_cols=21 Identities=5% Similarity=0.164 Sum_probs=13.0
Q ss_pred HHHHHHHc--CCcEEEccCCchH
Q 015289 328 IIEVVRAS--GLNLMIGGMVETR 348 (409)
Q Consensus 328 i~~~A~~~--gi~~~~~~~~es~ 348 (409)
+.++.+.. +++++..+-+.++
T Consensus 233 v~~i~~~~~~~ipiia~GGI~~~ 255 (289)
T cd02810 233 VARLAARLQLDIPIIGVGGIDSG 255 (289)
T ss_pred HHHHHHhcCCCCCEEEECCCCCH
Confidence 44555666 7888876655443
No 453
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=25.45 E-value=5.1e+02 Score=23.50 Aligned_cols=92 Identities=22% Similarity=0.355 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHcCCCeEEEecCC--------ChhHHHHHH----HHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHh
Q 015289 187 PAEAAELASKYRKQGFTTLKLKVGK--------NLKEDIEVL----RAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE 254 (409)
Q Consensus 187 ~~~~~~~~~~~~~~Gf~~~KiKvG~--------~~~~d~~~l----~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~ 254 (409)
.++..+.++++++.|-..+-+-.+. +.+++++++ +++++..+++.|.+|. |+++.+...++.
T Consensus 18 ~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT---~~~~v~~~aL~~--- 91 (210)
T PF00809_consen 18 EDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDT---FNPEVAEAALKA--- 91 (210)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEE---SSHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEEC---CCHHHHHHHHHc---
Confidence 4556778899999999999998662 234555554 3344434699999996 556555444433
Q ss_pred CCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEe
Q 015289 255 MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 291 (409)
Q Consensus 255 ~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~ 291 (409)
+.. ||=.-..-.+.+.+..+.+ +++.|+.+
T Consensus 92 -g~~--~ind~~~~~~~~~~~~l~a----~~~~~vV~ 121 (210)
T PF00809_consen 92 -GAD--IINDISGFEDDPEMLPLAA----EYGAPVVL 121 (210)
T ss_dssp -TSS--EEEETTTTSSSTTHHHHHH----HHTSEEEE
T ss_pred -Ccc--eEEecccccccchhhhhhh----cCCCEEEE
Confidence 443 6655555332344555543 35666654
No 454
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=25.43 E-value=5.3e+02 Score=23.66 Aligned_cols=116 Identities=13% Similarity=0.177 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecC------CChhHHHHHHHHHHhhCCC--cEEEEeCCCCCCHHHHHHHHHHHHhCCC
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVG------KNLKEDIEVLRAIRAVHPD--SSFILDANEGYKPQEAVEVLEKLYEMGV 257 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG------~~~~~d~~~l~avr~~~~~--~~l~vDaN~~w~~~~A~~~~~~L~~~~l 257 (409)
+.+.-..+++++++.|-..+.+-+. .+.+.-.+.++++++.-.+ +++.+.... ++.++-.+..+...+.|.
T Consensus 68 ~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~-L~~~ei~~a~~ia~eaGA 146 (211)
T TIGR00126 68 TTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGL-LTDEEIRKACEICIDAGA 146 (211)
T ss_pred cHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCC-CCHHHHHHHHHHHHHhCC
Confidence 4444456678888999999997653 2444455567777775223 466777666 887776677777778886
Q ss_pred CCceeecC--CC-----CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCC
Q 015289 258 TPVLFEQP--VH-----RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 309 (409)
Q Consensus 258 ~~~~iEeP--~~-----~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a 309 (409)
. |+--. +. .+|...+++. .+.+.++-.+. -+.+..++..+++.|+
T Consensus 147 D--fvKTsTGf~~~gat~~dv~~m~~~---v~~~v~IKaaG--Girt~~~a~~~i~aGa 198 (211)
T TIGR00126 147 D--FVKTSTGFGAGGATVEDVRLMRNT---VGDTIGVKASG--GVRTAEDAIAMIEAGA 198 (211)
T ss_pred C--EEEeCCCCCCCCCCHHHHHHHHHH---hccCCeEEEeC--CCCCHHHHHHHHHHhh
Confidence 4 88776 32 1344444443 33344444444 4568999999998875
No 455
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=25.13 E-value=5.3e+02 Score=23.54 Aligned_cols=88 Identities=19% Similarity=0.232 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhCCCCCcee---ec--CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 244 EAVEVLEKLYEMGVTPVLF---EQ--PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 244 ~A~~~~~~L~~~~l~~~~i---Ee--P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
+..++++.++++++.-..+ +- =-...+++.++++.+ .+++||..|=-+.+..++.++++.| ++.+.+.-.
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~----~~~~pv~~~ggi~~~~d~~~~~~~G-~~~vilg~~ 105 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAE----ECFMPLTVGGGIRSLEDAKKLLSLG-ADKVSINTA 105 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHH----hCCCCEEEECCCCCHHHHHHHHHcC-CCEEEEChh
Confidence 3455666666665431111 10 011235666777764 5789999999999999999988876 677755422
Q ss_pred CCcHHHHHHHHHHHHHcCCc
Q 015289 319 KVGVLGALEIIEVVRASGLN 338 (409)
Q Consensus 319 ~~Gi~~~~~i~~~A~~~gi~ 338 (409)
. +...-.+.++.+.++-+
T Consensus 106 ~--l~~~~~~~~~~~~~~~~ 123 (232)
T TIGR03572 106 A--LENPDLIEEAARRFGSQ 123 (232)
T ss_pred H--hcCHHHHHHHHHHcCCc
Confidence 1 22233445555666544
No 456
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=25.11 E-value=5.5e+02 Score=23.73 Aligned_cols=131 Identities=19% Similarity=0.254 Sum_probs=74.2
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCC------CC------CHH
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANE------GY------KPQ 243 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~------~w------~~~ 243 (409)
+|+.+..++.+.+++ +++.+.|+.. +=+|.-.- |.+.++.+-+.++++.+.+|+.. +| ++.
T Consensus 74 ~pv~~gGGIrs~edv----~~l~~~G~~~--vivGtaa~-~~~~l~~~~~~~g~ivvslD~~~g~v~~~gw~~~~~~~~~ 146 (228)
T PRK04128 74 LKVQVGGGLRTYESI----KDAYEIGVEN--VIIGTKAF-DLEFLEKVTSEFEGITVSLDVKGGRIAVKGWLEESSIKVE 146 (228)
T ss_pred CCEEEcCCCCCHHHH----HHHHHCCCCE--EEECchhc-CHHHHHHHHHHcCCEEEEEEccCCeEecCCCeEcCCCCHH
Confidence 344455566676654 4455567764 44563323 67788888777667889999833 23 344
Q ss_pred HHHHHHHHHHhCCCCCceeecCCCCC-CHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc
Q 015289 244 EAVEVLEKLYEMGVTPVLFEQPVHRD-DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321 (409)
Q Consensus 244 ~A~~~~~~L~~~~l~~~~iEeP~~~~-d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G 321 (409)
+++++++.+ +. .+|=--+..| -..++.++.+. ..++||.+.=-+.+.+|+.++.+.|+--++.-+.-.-|
T Consensus 147 ~~~~~~~~~----~~-~ii~t~i~~dGt~~G~d~l~~~---~~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 147 DAYEMLKNY----VN-RFIYTSIERDGTLTGIEEIERF---WGDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred HHHHHHHHH----hC-EEEEEeccchhcccCHHHHHHh---cCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 544444444 21 2333333332 12333344321 24689998888999999999888764333433333334
No 457
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=25.04 E-value=3.7e+02 Score=26.69 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEccCC
Q 015289 322 VLGALEIIEVVRASGLNLMIGGMV 345 (409)
Q Consensus 322 i~~~~~i~~~A~~~gi~~~~~~~~ 345 (409)
..+-+.....++++|+.+..|+.+
T Consensus 178 ~edR~~tl~~vk~~Gi~vcsGgI~ 201 (335)
T COG0502 178 YEDRLNTLENVREAGIEVCSGGIV 201 (335)
T ss_pred HHHHHHHHHHHHHcCCccccceEe
Confidence 456778899999999999887754
No 458
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=25.01 E-value=94 Score=29.82 Aligned_cols=106 Identities=22% Similarity=0.373 Sum_probs=61.6
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhCCCC-----C----ceeecC-CCCCCHHH------HHHhHHHhhccCCCeEEeCC
Q 015289 230 SSFILDANEGYKPQEAVEVLEKLYEMGVT-----P----VLFEQP-VHRDDWEG------LGHVSHIAKDKFGVSVAADE 293 (409)
Q Consensus 230 ~~l~vDaN~~w~~~~A~~~~~~L~~~~l~-----~----~~iEeP-~~~~d~~~------~~~l~~~~~~~~~ipIa~dE 293 (409)
.-+++-...--+.+++++++++|++.+.. + .|+|-| ..+..|.| +..+.+ .++.+++|++.+
T Consensus 17 l~viaGPCsies~e~~~~~A~~l~~~~~~~~~~i~~~~~~~~~KpRts~~~f~G~g~d~~L~~l~~-v~~~~glpv~tE- 94 (270)
T PF00793_consen 17 LLVIAGPCSIESEEQALEYAERLKELGEKLGDRIPLRMRAYFEKPRTSPYSFQGLGLDPGLDILSE-VKEGLGLPVATE- 94 (270)
T ss_dssp EEEEEEESB-S-HHHHHHHHHHHHHHHHHHTTTEEEEEEECSC-TTSSTTST-CSTHHHHHHHHHH-HHHHHT-EEEEE-
T ss_pred eEEEEECCccCCHHHHHHHHHHHHHhhhhcCcceEEEEEEEecCCccCCCCCCCCCCCccchhHHH-HHhhhCCeeeEE-
Confidence 45666667777889999888888753211 0 389999 44443222 333332 234789999983
Q ss_pred CCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEEcc
Q 015289 294 SCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGG 343 (409)
Q Consensus 294 s~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~~~ 343 (409)
+.++.+...+. ..+|++|+-.- ..+-......|...+.++.+-.
T Consensus 95 -v~~~~~~~~~~--d~vd~lqIgAr---~~~n~~ll~~as~~~~pV~~K~ 138 (270)
T PF00793_consen 95 -VLDPEQAEYVA--DLVDWLQIGAR---LMENQDLLEAASGTGKPVGFKN 138 (270)
T ss_dssp -ESSGGGHHHHH--TTESEEEE-GG---GTTCHHHHHHHHCTSSEEEEEE
T ss_pred -ecCcccHHHHH--hcCcEEEECcc---hhcCHHHHHHhccCCCeEEecc
Confidence 45555665554 35899887322 2344555677778899988643
No 459
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=24.95 E-value=7.3e+02 Score=25.89 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=32.4
Q ss_pred HHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEEccC
Q 015289 302 KKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 302 ~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
+.+.+.| .+++.+++...|+.....+.+.|+..++++..|-.
T Consensus 248 ~~~~e~G-~~~~mv~~~~~G~~~l~~l~~~~~~~~l~IhaHrA 289 (468)
T PRK04208 248 EFAKELG-SPIVMIDVVTAGWTALQSLREWCRDNGLALHAHRA 289 (468)
T ss_pred HHHHHhC-CCEEEEeccccccHHHHHHHHhhhcCCcEEEecCC
Confidence 3445555 58999999999987777778888888999977653
No 460
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=24.85 E-value=6.3e+02 Score=25.58 Aligned_cols=77 Identities=14% Similarity=0.231 Sum_probs=48.7
Q ss_pred CHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc---H---HHHHH-HHHHHHHc--CCcEE
Q 015289 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG---V---LGALE-IIEVVRAS--GLNLM 340 (409)
Q Consensus 270 d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G---i---~~~~~-i~~~A~~~--gi~~~ 340 (409)
+|+.+++|++ ..+.||...+- .+.++.+.+++.| +|.|.+-- .| + ..+.. +.+++++. +++++
T Consensus 233 tW~di~~lr~----~~~~pvivKgV-~s~~dA~~a~~~G-vd~I~Vs~--hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi 304 (381)
T PRK11197 233 SWKDLEWIRD----FWDGPMVIKGI-LDPEDARDAVRFG-ADGIVVSN--HGGRQLDGVLSSARALPAIADAVKGDITIL 304 (381)
T ss_pred CHHHHHHHHH----hCCCCEEEEec-CCHHHHHHHHhCC-CCEEEECC--CCCCCCCCcccHHHHHHHHHHHhcCCCeEE
Confidence 5666777764 67899999887 8889999999987 68875542 22 1 11222 23334433 58888
Q ss_pred EccCCchHHHHHHH
Q 015289 341 IGGMVETRLAMGFA 354 (409)
Q Consensus 341 ~~~~~es~i~~~~~ 354 (409)
..+-+-++.-..-+
T Consensus 305 ~dGGIr~g~Di~KA 318 (381)
T PRK11197 305 ADSGIRNGLDVVRM 318 (381)
T ss_pred eeCCcCcHHHHHHH
Confidence 87665554433333
No 461
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=24.68 E-value=3.9e+02 Score=24.39 Aligned_cols=61 Identities=25% Similarity=0.315 Sum_probs=39.4
Q ss_pred CHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCC
Q 015289 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGL 337 (409)
Q Consensus 270 d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi 337 (409)
+++-++++++ .+++||..|=-+.+.++++.+++.|+ |.+.+-... +.....+.++++++|.
T Consensus 60 ~~~~i~~i~~----~~~~pi~~ggGI~~~ed~~~~~~~Ga-~~vvlgs~~--l~d~~~~~~~~~~~g~ 120 (230)
T TIGR00007 60 NLPVIKKIVR----ETGVPVQVGGGIRSLEDVEKLLDLGV-DRVIIGTAA--VENPDLVKELLKEYGP 120 (230)
T ss_pred cHHHHHHHHH----hcCCCEEEeCCcCCHHHHHHHHHcCC-CEEEEChHH--hhCHHHHHHHHHHhCC
Confidence 4555566653 46788888888899999988888774 555331111 2334456777788773
No 462
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=24.63 E-value=4.1e+02 Score=25.71 Aligned_cols=97 Identities=15% Similarity=0.155 Sum_probs=54.5
Q ss_pred HHHHHHHHcCCCeEEEecC---CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCC
Q 015289 192 ELASKYRKQGFTTLKLKVG---KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR 268 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG---~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~ 268 (409)
+++.+..+.||..+--++. .++.+-+..++.|... +. .-.+||.++...+.+ + . .
T Consensus 123 eEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~---i~----~~~gyt~~t~~~~~~------------~--~-~ 180 (283)
T cd04727 123 GEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGE---IR----KLQSMSEEELYAVAK------------E--I-Q 180 (283)
T ss_pred HHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHH---HH----HHhCCCHHHHHhhhc------------c--c-C
Confidence 3455566788888877763 3333444444444331 11 123455444211110 0 0 2
Q ss_pred CCHHHHHHhHHHhhccCCCeEE--eCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 269 DDWEGLGHVSHIAKDKFGVSVA--ADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 269 ~d~~~~~~l~~~~~~~~~ipIa--~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
-+++.++++.+ ...+||. +-=.++++.++.++++.|+ |.+.+
T Consensus 181 ~d~elLk~l~~----~~~iPVV~iAeGGI~Tpena~~v~e~GA-dgVaV 224 (283)
T cd04727 181 APYELVKETAK----LGRLPVVNFAAGGVATPADAALMMQLGA-DGVFV 224 (283)
T ss_pred CCHHHHHHHHH----hcCCCeEEEEeCCCCCHHHHHHHHHcCC-CEEEE
Confidence 25677888764 4579996 3334779999999999884 66544
No 463
>PRK08445 hypothetical protein; Provisional
Probab=24.60 E-value=3.2e+02 Score=27.18 Aligned_cols=70 Identities=20% Similarity=0.134 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCCh----hHHHHHHHHHHhhCCCcEEEE------e---CCCCCCHHHHHHHHHHH
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKNL----KEDIEVLRAIRAVHPDSSFIL------D---ANEGYKPQEAVEVLEKL 252 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~----~~d~~~l~avr~~~~~~~l~v------D---aN~~w~~~~A~~~~~~L 252 (409)
+++++.+.++++.+.|.+.+-+--|.++ +.=.+.++.|++.+|++.+.. | .-+.++.+ +.+++|
T Consensus 74 ~~eeI~~~~~~a~~~g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~---e~L~~L 150 (348)
T PRK08445 74 SFEEIDKKIEELLAIGGTQILFQGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIK---EVLERL 150 (348)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHH---HHHHHH
Confidence 7889999999999999888765444333 333566778888899887642 2 11344433 467778
Q ss_pred HhCCCC
Q 015289 253 YEMGVT 258 (409)
Q Consensus 253 ~~~~l~ 258 (409)
++.|+.
T Consensus 151 keAGl~ 156 (348)
T PRK08445 151 QAKGLS 156 (348)
T ss_pred HHcCCC
Confidence 887764
No 464
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=24.59 E-value=5.2e+02 Score=23.27 Aligned_cols=55 Identities=20% Similarity=0.319 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHH-HHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCC
Q 015289 184 IVSPAEAAELASKY-RKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEG 239 (409)
Q Consensus 184 ~~~~~~~~~~~~~~-~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~ 239 (409)
..+|+++++...+. +++|++.+.|.-+.++ ---+.+..+-+..++-++.+..|+.
T Consensus 73 f~~P~eVaeRL~ei~K~~g~d~vRiSG~EP~-l~~EHvlevIeLl~~~tFvlETNG~ 128 (228)
T COG5014 73 FLSPEEVAERLLEISKKRGCDLVRISGAEPI-LGREHVLEVIELLVNNTFVLETNGL 128 (228)
T ss_pred ccCHHHHHHHHHHHHHhcCCcEEEeeCCCcc-ccHHHHHHHHHhccCceEEEEeCCe
Confidence 45788887766444 5689999999876322 1124444455555677777777763
No 465
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=24.56 E-value=6.4e+02 Score=24.31 Aligned_cols=96 Identities=20% Similarity=0.297 Sum_probs=54.0
Q ss_pred eCCCCCCHHHHHHHHHHHHhCCCCCceee----------cCCCCCCHHHHHHhH---HHhhccCCCeEEeCCCCCCHHHH
Q 015289 235 DANEGYKPQEAVEVLEKLYEMGVTPVLFE----------QPVHRDDWEGLGHVS---HIAKDKFGVSVAADESCRSLDDV 301 (409)
Q Consensus 235 DaN~~w~~~~A~~~~~~L~~~~l~~~~iE----------eP~~~~d~~~~~~l~---~~~~~~~~ipIa~dEs~~~~~~~ 301 (409)
|.....+.++|++.+..+-+.|.. +|. +|++.+ +.++++. +.++...++||..|= +++.-+
T Consensus 30 dgg~~~~~~~a~~~a~~~~~~GAd--IIDIGgeSTrPg~~~v~~e--eE~~Rv~pvI~~l~~~~~~~ISIDT--~~~~va 103 (282)
T PRK11613 30 DGGTHNSLIDAVKHANLMINAGAT--IIDVGGESTRPGAAEVSVE--EELDRVIPVVEAIAQRFEVWISVDT--SKPEVI 103 (282)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCc--EEEECCCCCCCCCCCCCHH--HHHHHHHHHHHHHHhcCCCeEEEEC--CCHHHH
Confidence 334445667777766666555432 332 222221 2222222 233334579998863 566678
Q ss_pred HHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEE
Q 015289 302 KKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMI 341 (409)
Q Consensus 302 ~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~ 341 (409)
+.+++.| +|++|= + .|+.. -+++..++++|.++++
T Consensus 104 ~~AL~~G-adiIND-I--~g~~d-~~~~~~~a~~~~~vVl 138 (282)
T PRK11613 104 RESAKAG-AHIIND-I--RSLSE-PGALEAAAETGLPVCL 138 (282)
T ss_pred HHHHHcC-CCEEEE-C--CCCCC-HHHHHHHHHcCCCEEE
Confidence 8899887 688763 2 24321 1445567888988876
No 466
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=24.53 E-value=5.3e+02 Score=23.36 Aligned_cols=148 Identities=20% Similarity=0.256 Sum_probs=81.6
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEE----EEe-CCCCCCHHHHHHHHHHHHhCC
Q 015289 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSF----ILD-ANEGYKPQEAVEVLEKLYEMG 256 (409)
Q Consensus 182 i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l----~vD-aN~~w~~~~A~~~~~~L~~~~ 256 (409)
-|+.+++++.+.++.+.+.|-..+.+. . .+.++++|+.. +..+ +-| .|..+-...-.+.++.+.+.|
T Consensus 17 ~~~~~~~~~~~~a~a~~~~G~~~~~~~---~----~~~i~~i~~~~-~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aG 88 (221)
T PRK01130 17 EPLHSPEIMAAMALAAVQGGAVGIRAN---G----VEDIKAIRAVV-DVPIIGIIKRDYPDSEVYITPTLKEVDALAAAG 88 (221)
T ss_pred CCCCCHHHHHHHHHHHHHCCCeEEEcC---C----HHHHHHHHHhC-CCCEEEEEecCCCCCCceECCCHHHHHHHHHcC
Confidence 356678888888999999999888862 1 45566666642 2332 224 231110000123456677777
Q ss_pred CCCceee--cCCC--C--CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC--------CCcH
Q 015289 257 VTPVLFE--QPVH--R--DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA--------KVGV 322 (409)
Q Consensus 257 l~~~~iE--eP~~--~--~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~--------~~Gi 322 (409)
.. ++- -|.. + ++...+.+.. ++..++++.. .+.+..++..+.+.| +|++.+... ..+
T Consensus 89 ad--~I~~d~~~~~~p~~~~~~~~i~~~---~~~~~i~vi~--~v~t~ee~~~a~~~G-~d~i~~~~~g~t~~~~~~~~- 159 (221)
T PRK01130 89 AD--IIALDATLRPRPDGETLAELVKRI---KEYPGQLLMA--DCSTLEEGLAAQKLG-FDFIGTTLSGYTEETKKPEE- 159 (221)
T ss_pred CC--EEEEeCCCCCCCCCCCHHHHHHHH---HhCCCCeEEE--eCCCHHHHHHHHHcC-CCEEEcCCceeecCCCCCCC-
Confidence 64 333 2221 1 3333333322 2216788886 467888888888877 698865321 111
Q ss_pred HHHHHHHHHHHHcCCcEEEccCCc
Q 015289 323 LGALEIIEVVRASGLNLMIGGMVE 346 (409)
Q Consensus 323 ~~~~~i~~~A~~~gi~~~~~~~~e 346 (409)
...-.+.++.+..+++++..+-+.
T Consensus 160 ~~~~~i~~i~~~~~iPvia~GGI~ 183 (221)
T PRK01130 160 PDFALLKELLKAVGCPVIAEGRIN 183 (221)
T ss_pred cCHHHHHHHHHhCCCCEEEECCCC
Confidence 111233444555589988866543
No 467
>PLN02334 ribulose-phosphate 3-epimerase
Probab=24.51 E-value=5.5e+02 Score=23.52 Aligned_cols=120 Identities=14% Similarity=0.153 Sum_probs=63.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHH-HhC-CCCCc
Q 015289 184 IVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKL-YEM-GVTPV 260 (409)
Q Consensus 184 ~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L-~~~-~l~~~ 260 (409)
..+|++..+.+ .+.|...+-+.++. ..+...+.++.+++ .+..+.+..|..-..+.+.++++.- -++ .+ .
T Consensus 74 v~~p~d~~~~~---~~~gad~v~vH~~q~~~d~~~~~~~~i~~--~g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~--~ 146 (229)
T PLN02334 74 VTNPEDYVPDF---AKAGASIFTFHIEQASTIHLHRLIQQIKS--AGMKAGVVLNPGTPVEAVEPVVEKGLVDMVLV--M 146 (229)
T ss_pred cCCHHHHHHHH---HHcCCCEEEEeeccccchhHHHHHHHHHH--CCCeEEEEECCCCCHHHHHHHHhccCCCEEEE--E
Confidence 44676665554 55788889888882 22233344555554 4556777776432333333333220 221 11 0
Q ss_pred eee-----cCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 261 LFE-----QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 261 ~iE-----eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
=++ |.+.+..++.++++++ ...++||..+=.+ +.+.+..+.+.|+ |++.+
T Consensus 147 ~v~pg~~~~~~~~~~~~~i~~~~~---~~~~~~I~a~GGI-~~e~i~~l~~aGa-d~vvv 201 (229)
T PLN02334 147 SVEPGFGGQSFIPSMMDKVRALRK---KYPELDIEVDGGV-GPSTIDKAAEAGA-NVIVA 201 (229)
T ss_pred EEecCCCccccCHHHHHHHHHHHH---hCCCCcEEEeCCC-CHHHHHHHHHcCC-CEEEE
Confidence 122 3333333344444432 1235788776555 6778888888885 77654
No 468
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=24.50 E-value=6.4e+02 Score=24.25 Aligned_cols=79 Identities=13% Similarity=0.219 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCC-CeEEeCCC-C--CCHHHHHHHHHcCCCCEEE
Q 015289 239 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG-VSVAADES-C--RSLDDVKKIVKGNLADVIN 314 (409)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~-ipIa~dEs-~--~~~~~~~~~i~~~a~div~ 314 (409)
.++++...++++.+.+.|.....|-+-+-.-......++.+.++++.+ +||...=. - .........++.| ++.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG-~~~id 229 (287)
T PRK05692 151 EVPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEG-ITVFD 229 (287)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhC-CCEEE
Confidence 456666666666666666544455555554444444444443443433 45543111 0 1112233455555 56655
Q ss_pred eCCC
Q 015289 315 IKLA 318 (409)
Q Consensus 315 ~k~~ 318 (409)
.-++
T Consensus 230 ~s~~ 233 (287)
T PRK05692 230 ASVG 233 (287)
T ss_pred EEcc
Confidence 4444
No 469
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=24.45 E-value=6.5e+02 Score=24.30 Aligned_cols=143 Identities=16% Similarity=0.206 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEe-----cCC---ChhHHHHHHH----HHHhhCCCcEEEEeCCCCCCHHHHHHHHHHH
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLK-----VGK---NLKEDIEVLR----AIRAVHPDSSFILDANEGYKPQEAVEVLEKL 252 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiK-----vG~---~~~~d~~~l~----avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L 252 (409)
.+++.+.+.+.+++++|-..+-+- .|. +.+++++|+. ++++.. ++.|.||.. +++.|.+-++
T Consensus 35 ~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-~~~ISIDT~---~~~va~~AL~-- 108 (282)
T PRK11613 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-EVWISVDTS---KPEVIRESAK-- 108 (282)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEEECC---CHHHHHHHHH--
Confidence 367889999999999999888876 331 3455666643 333322 688999964 4444433333
Q ss_pred HhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCC------C---C-------H-HH----HHHHHHcCCC-
Q 015289 253 YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESC------R---S-------L-DD----VKKIVKGNLA- 310 (409)
Q Consensus 253 ~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~------~---~-------~-~~----~~~~i~~~a~- 310 (409)
.|.. +|=+-..-.|.+.+..++ +++.|+.+--+. . . . .. +..+.+.|.-
T Consensus 109 --~Gad--iINDI~g~~d~~~~~~~a-----~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~ 179 (282)
T PRK11613 109 --AGAH--IINDIRSLSEPGALEAAA-----ETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAK 179 (282)
T ss_pred --cCCC--EEEECCCCCCHHHHHHHH-----HcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCCh
Confidence 2543 554432222222233332 356666652210 0 0 0 11 2223444421
Q ss_pred CEEEeCCCCCcH----HHH---HHHHHHHHHcCCcEEEcc
Q 015289 311 DVINIKLAKVGV----LGA---LEIIEVVRASGLNLMIGG 343 (409)
Q Consensus 311 div~~k~~~~Gi----~~~---~~i~~~A~~~gi~~~~~~ 343 (409)
+=+.+||. +|+ ... ++-.+.-+.+|.|+.+|.
T Consensus 180 ~~IilDPG-iGF~k~~~~n~~ll~~l~~l~~lg~Pilvg~ 218 (282)
T PRK11613 180 EKLLLDPG-FGFGKNLSHNYQLLARLAEFHHFNLPLLVGM 218 (282)
T ss_pred hhEEEeCC-CCcCCCHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 24568987 452 222 333444567889988763
No 470
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=24.43 E-value=6.3e+02 Score=24.17 Aligned_cols=92 Identities=20% Similarity=0.290 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHh----CCCCCceeec------CC-CCCC------HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHH
Q 015289 240 YKPQEAVEVLEKLYE----MGVTPVLFEQ------PV-HRDD------WEGLGHVSHIAKDKFGVSVAADESCRSLDDVK 302 (409)
Q Consensus 240 w~~~~A~~~~~~L~~----~~l~~~~iEe------P~-~~~d------~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~ 302 (409)
=+.++..+.++.+++ +++. ++=- |- +++. .++++.|.+ .++++++||.. .+.+.+++.
T Consensus 21 Es~e~~~~~A~~lk~~~~~~~~~--~~fK~sf~KapRTSp~sFqG~G~eeGL~~L~~-vk~~~GlpvvT--eV~~~~~~~ 95 (264)
T PRK05198 21 ESRDLALRIAEHLKEITDKLGIP--YVFKASFDKANRSSIHSFRGPGLEEGLKILQE-VKETFGVPVLT--DVHEPEQAA 95 (264)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCC--eEEeccccCCCCCCCCCCCCCChHHHHHHHHH-HHHHHCCceEE--EeCCHHHHH
Confidence 357777777777776 3332 2222 32 2222 356666655 35688999998 467777777
Q ss_pred HHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEE
Q 015289 303 KIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMI 341 (409)
Q Consensus 303 ~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~ 341 (409)
...+ .+|++|+-.-.+ +--.++..+.+.|.++.+
T Consensus 96 ~v~~--~~DilQIgArn~---rn~~LL~a~g~t~kpV~l 129 (264)
T PRK05198 96 PVAE--VVDVLQIPAFLC---RQTDLLVAAAKTGKVVNI 129 (264)
T ss_pred HHHh--hCcEEEECchhc---chHHHHHHHhccCCeEEe
Confidence 6664 489998743221 222445555566888876
No 471
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=24.34 E-value=6.4e+02 Score=24.22 Aligned_cols=122 Identities=18% Similarity=0.226 Sum_probs=72.6
Q ss_pred HHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhh-C-CCcEEE--EeC-----------CCCC-CHHHHHHHHHHHH-
Q 015289 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDSSFI--LDA-----------NEGY-KPQEAVEVLEKLY- 253 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~-~-~~~~l~--vDa-----------N~~w-~~~~A~~~~~~L~- 253 (409)
+.+++..+.||+.+-+.-. .+.++.+++.+.+++. . -++.+- +.. ...+ ++++|.++.++..
T Consensus 88 e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgv 167 (282)
T TIGR01859 88 ESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGV 167 (282)
T ss_pred HHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCc
Confidence 4455667789999988765 3556677777777653 1 122222 111 1224 6899988887442
Q ss_pred hC-C--CCCce-eecCCCCCCHHHHHHhHHHhhccCCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 254 EM-G--VTPVL-FEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 254 ~~-~--l~~~~-iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
++ . +...+ +..-.+.-+++.++++++ .+++|+.+ |=|=.+..+++++++.| ++-+|+...
T Consensus 168 D~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~----~~~iPlv~hGgSGi~~e~i~~~i~~G-i~kiNv~T~ 232 (282)
T TIGR01859 168 DYLAAAIGTSHGKYKGEPGLDFERLKEIKE----LTNIPLVLHGASGIPEEQIKKAIKLG-IAKINIDTD 232 (282)
T ss_pred CEEeeccCccccccCCCCccCHHHHHHHHH----HhCCCEEEECCCCCCHHHHHHHHHcC-CCEEEECcH
Confidence 11 1 00000 111123457888888875 56788874 45566778899999987 577777544
No 472
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=24.22 E-value=5.8e+02 Score=23.63 Aligned_cols=114 Identities=9% Similarity=0.132 Sum_probs=74.0
Q ss_pred HHHHHHHhhC-CCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCC
Q 015289 218 EVLRAIRAVH-PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCR 296 (409)
Q Consensus 218 ~~l~avr~~~-~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~ 296 (409)
+.++.+++.. ++-.+.+-.. +.+.++.++-+++|.+..-+ .+|==|+..+-+...+.|.+ -|+++..-- ++
T Consensus 41 ~~~~~i~~~~~~~~~v~~Qv~-~~d~e~mi~ea~~l~~~~~n-i~IKIP~T~~Gl~A~~~L~~-----~GI~vn~T~-vf 112 (220)
T PRK12653 41 VVLPQLHEAMGGQGRLFAQVM-ATTAEGMVNDARKLRSIIAD-IVVKVPVTAEGLAAIKMLKA-----EGIPTLGTA-VY 112 (220)
T ss_pred HHHHHHHHHhCCCCcEEEEEe-cCCHHHHHHHHHHHHHhCCC-EEEEeCCCHHHHHHHHHHHH-----cCCCeeEEE-ec
Confidence 4678888864 4445554443 46777777777777665433 58888887655555555542 366665422 78
Q ss_pred CHHHHHHHHHcCCCCEEEeCCCCC---c---HHHHHHHHHHHHHcCCcEE
Q 015289 297 SLDDVKKIVKGNLADVINIKLAKV---G---VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 297 ~~~~~~~~i~~~a~div~~k~~~~---G---i~~~~~i~~~A~~~gi~~~ 340 (409)
+..+..-....| ++++.|=++|+ | +.-..++..+.+.++.++-
T Consensus 113 s~~Qa~~Aa~aG-a~yIspyvgR~~~~g~dg~~~i~~i~~~~~~~~~~tk 161 (220)
T PRK12653 113 GAAQGLLSALAG-AEYVAPYVNRIDAQGGSGIQTVTDLQQLLKMHAPQAK 161 (220)
T ss_pred CHHHHHHHHhcC-CcEEEeecChHhhcCCChHHHHHHHHHHHHhcCCCcE
Confidence 888877777776 69998877764 3 4445677777777766654
No 473
>PRK14057 epimerase; Provisional
Probab=24.04 E-value=6.3e+02 Score=24.02 Aligned_cols=162 Identities=10% Similarity=0.037 Sum_probs=91.5
Q ss_pred eeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC-----CChhHHHHHHHHHHhhCC-CcEEEEeCCCCCCHHHHHHHHH
Q 015289 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-----KNLKEDIEVLRAIRAVHP-DSSFILDANEGYKPQEAVEVLE 250 (409)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG-----~~~~~d~~~l~avr~~~~-~~~l~vDaN~~w~~~~A~~~~~ 250 (409)
+...|+-..+...+.++++++.+.|...+-+.|- +++.---+.++++|+..| |+.||+. ++++ +++
T Consensus 21 ~IspSil~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~~~p~DvHLMV~-----~P~~---~i~ 92 (254)
T PRK14057 21 PLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLPQTFIKDVHLMVA-----DQWT---AAQ 92 (254)
T ss_pred ceEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCccccCHHHHHHhccCCCeeEEeeeC-----CHHH---HHH
Confidence 3344555567778888888888889988888874 344445566777776544 7888887 3544 666
Q ss_pred HHHhCCCCC--ceeecCCCCCCH-HHHHHhHHHhhccCCC-----------eEEeCCCCCCHHHHHHHHHcCCCCEE---
Q 015289 251 KLYEMGVTP--VLFEQPVHRDDW-EGLGHVSHIAKDKFGV-----------SVAADESCRSLDDVKKIVKGNLADVI--- 313 (409)
Q Consensus 251 ~L~~~~l~~--~~iEeP~~~~d~-~~~~~l~~~~~~~~~i-----------pIa~dEs~~~~~~~~~~i~~~a~div--- 313 (409)
.+.+.+... .=+|-. .++ ..++++++ .++ =||+.=. +....+..++. .+|.|
T Consensus 93 ~~~~aGad~It~H~Ea~---~~~~~~l~~Ir~-----~G~k~~~~~~~~kaGlAlnP~-Tp~e~i~~~l~--~vD~VLvM 161 (254)
T PRK14057 93 ACVKAGAHCITLQAEGD---IHLHHTLSWLGQ-----QTVPVIGGEMPVIRGISLCPA-TPLDVIIPILS--DVEVIQLL 161 (254)
T ss_pred HHHHhCCCEEEEeeccc---cCHHHHHHHHHH-----cCCCcccccccceeEEEECCC-CCHHHHHHHHH--hCCEEEEE
Confidence 666665431 123633 222 33344442 232 3444322 45667777775 36754
Q ss_pred EeCCCCCc--HH-HH-HHH---HHHHHHcCCcEEEccCCchHHHHHHHHHHHc
Q 015289 314 NIKLAKVG--VL-GA-LEI---IEVVRASGLNLMIGGMVETRLAMGFAGHLSA 359 (409)
Q Consensus 314 ~~k~~~~G--i~-~~-~~i---~~~A~~~gi~~~~~~~~es~i~~~~~~hlaa 359 (409)
.++|+.-| +. .+ .|+ .++-.++|..+.+. +++++.......+..
T Consensus 162 tV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~Ie--VDGGI~~~ti~~l~~ 212 (254)
T PRK14057 162 AVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIV--IDGSLTQDQLPSLIA 212 (254)
T ss_pred EECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEE--EECCCCHHHHHHHHH
Confidence 57888877 33 33 233 34445666553331 144444444444443
No 474
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=23.68 E-value=7.8e+02 Score=24.94 Aligned_cols=85 Identities=18% Similarity=0.121 Sum_probs=46.6
Q ss_pred CCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeec----CC-C---------CCCHHHHHHhHHHhhccCCCeEEeCC
Q 015289 228 PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ----PV-H---------RDDWEGLGHVSHIAKDKFGVSVAADE 293 (409)
Q Consensus 228 ~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEe----P~-~---------~~d~~~~~~l~~~~~~~~~ipIa~dE 293 (409)
++..+.+--|+.-+.++..++++.+++.+. .+||= |- . ..|.+.+.++.+.+++.+.+||..==
T Consensus 98 ~~~p~i~si~g~~~~~~~~~~a~~~~~~g~--d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl 175 (420)
T PRK08318 98 PDRALIASIMVECNEEEWKEIAPLVEETGA--DGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKL 175 (420)
T ss_pred CCceEEEEeccCCCHHHHHHHHHHHHhcCC--CEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEc
Confidence 344455555555456666666666666653 26662 21 0 13556666666655555667776433
Q ss_pred C--CCCHHHHHHHHHcCCCCEEE
Q 015289 294 S--CRSLDDVKKIVKGNLADVIN 314 (409)
Q Consensus 294 s--~~~~~~~~~~i~~~a~div~ 314 (409)
+ ..+..++.+.++...+|.+.
T Consensus 176 ~p~~~~~~~~a~~~~~~Gadgi~ 198 (420)
T PRK08318 176 TPNITDIREPARAAKRGGADAVS 198 (420)
T ss_pred CCCcccHHHHHHHHHHCCCCEEE
Confidence 3 33455665655555567766
No 475
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=23.40 E-value=2.6e+02 Score=27.39 Aligned_cols=43 Identities=14% Similarity=0.211 Sum_probs=33.8
Q ss_pred HHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEEccC
Q 015289 301 VKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 301 ~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
.+...+.| .+.+.+++.-.|+.....+++.++..++.+..|-.
T Consensus 101 a~~a~~~G-~~~vmv~~~~~G~~~~~~l~~~~~~~~~~ih~H~A 143 (309)
T PF00016_consen 101 AEYAKEAG-ANAVMVNVLTAGFSALQSLAEDARDNGLPIHAHRA 143 (309)
T ss_dssp HHHHHHHT-GSEEEEEHHHHCHHHHHHHHHHHHHHTSEEEEETT
T ss_pred hhhhhhhc-cchhhcccccccccccchhhhhhcccceeeeeccc
Confidence 34455666 69999998888888888889999999988877654
No 476
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=23.32 E-value=3.2e+02 Score=26.86 Aligned_cols=61 Identities=20% Similarity=0.304 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHcCCCeEEEecCC--------ChhHHHHHHHHHHhhC--CCcEEEEeCCCCCCHHHHHHHHH
Q 015289 187 PAEAAELASKYRKQGFTTLKLKVGK--------NLKEDIEVLRAIRAVH--PDSSFILDANEGYKPQEAVEVLE 250 (409)
Q Consensus 187 ~~~~~~~~~~~~~~Gf~~~KiKvG~--------~~~~d~~~l~avr~~~--~~~~l~vDaN~~w~~~~A~~~~~ 250 (409)
.+.+....+++...|| ++..|. .-..+.+|.+.+.+++ +++++++.+-++|...+.+.++.
T Consensus 25 ~~~~~~a~~~L~~~G~---~v~~~~~i~~~~~~~a~s~~~R~~dL~~af~d~~vk~Il~~rGGygs~rlLp~ld 95 (313)
T COG1619 25 TDALKRAIQRLENLGF---EVVFGEHILRRDQYFAGSDEERAEDLMSAFSDPDVKAILCVRGGYGSNRLLPYLD 95 (313)
T ss_pred HHHHHHHHHHHHHcCC---EEEechhhhhccccccCCHHHHHHHHHHHhcCCCCeEEEEcccCCChhhhhhhcc
Confidence 3444444566677886 555552 1235788999999983 78999999999999887666654
No 477
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=23.18 E-value=5.9e+02 Score=23.39 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=62.2
Q ss_pred HHHHHHHHHcCCCeEEEecC------CChhHHHHHHHHHHhh--CCCcEEEEeCCCCCCHH--------HHHHHHHHHHh
Q 015289 191 AELASKYRKQGFTTLKLKVG------KNLKEDIEVLRAIRAV--HPDSSFILDANEGYKPQ--------EAVEVLEKLYE 254 (409)
Q Consensus 191 ~~~~~~~~~~Gf~~~KiKvG------~~~~~d~~~l~avr~~--~~~~~l~vDaN~~w~~~--------~A~~~~~~L~~ 254 (409)
...++++++.|-..+++-+- .+.+...+.++++++. ..++++++- ---++.+ .-....+...+
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE-~~l~~~~~~~~~~~~~I~~a~ria~e 157 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILE-PYLRGEEVADEKKPDLIARAARIAAE 157 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEE-ECECHHHBSSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEE-EecCchhhcccccHHHHHHHHHHHHH
Confidence 56788889999999997653 1233445566777664 457788887 2222222 23445555677
Q ss_pred CCCCCceeecCCC------CCCHHHHHHhHHHhh--ccCCCeEEeCCCC----CCHHHHHHHHHcCC
Q 015289 255 MGVTPVLFEQPVH------RDDWEGLGHVSHIAK--DKFGVSVAADESC----RSLDDVKKIVKGNL 309 (409)
Q Consensus 255 ~~l~~~~iEeP~~------~~d~~~~~~l~~~~~--~~~~ipIa~dEs~----~~~~~~~~~i~~~a 309 (409)
.|.. |+=-..+ .+|.+.++++.+... .+.++-++.|-+. .++.+..++++.|+
T Consensus 158 ~GaD--~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa 222 (236)
T PF01791_consen 158 LGAD--FVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGA 222 (236)
T ss_dssp TT-S--EEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTH
T ss_pred hCCC--EEEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCC
Confidence 8764 6654444 234455555543100 1222445554311 44555566667664
No 478
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=22.99 E-value=8e+02 Score=24.82 Aligned_cols=56 Identities=21% Similarity=0.233 Sum_probs=41.2
Q ss_pred CCeEEeCCCCC-CHHHHHHHHHcCCCCEEEeCCCCCcHHHH--HHHHHHHHHcCCcEEE
Q 015289 286 GVSVAADESCR-SLDDVKKIVKGNLADVINIKLAKVGVLGA--LEIIEVVRASGLNLMI 341 (409)
Q Consensus 286 ~ipIa~dEs~~-~~~~~~~~i~~~a~div~~k~~~~Gi~~~--~~i~~~A~~~gi~~~~ 341 (409)
|.=.-+|=|.+ +...|.+++...-+|++|+-...+=-... .+.++.|.++|+.+.+
T Consensus 143 GkIr~~GFSfHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~I 201 (391)
T COG1453 143 GKIRNAGFSFHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFI 201 (391)
T ss_pred CcEEEeeecCCCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEE
Confidence 44445666655 45678999999999999998776542222 4778899999999987
No 479
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=22.79 E-value=3e+02 Score=25.06 Aligned_cols=19 Identities=11% Similarity=0.174 Sum_probs=13.8
Q ss_pred HHHHHHHHHcCCcEEEccC
Q 015289 326 LEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 326 ~~i~~~A~~~gi~~~~~~~ 344 (409)
.+.+++|+++|+++++|+.
T Consensus 111 ~~~~~~a~~~~~pv~iH~~ 129 (252)
T TIGR00010 111 RAQLQLAEELNLPVIIHAR 129 (252)
T ss_pred HHHHHHHHHhCCCeEEEec
Confidence 3457777888888888774
No 480
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=22.70 E-value=6.1e+02 Score=23.41 Aligned_cols=132 Identities=16% Similarity=0.175 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecC------CChhHHHHHHHHHHhh-CC-CcEEEEeCCCCCCHHHHHHHHHHHHhCCC
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVG------KNLKEDIEVLRAIRAV-HP-DSSFILDANEGYKPQEAVEVLEKLYEMGV 257 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG------~~~~~d~~~l~avr~~-~~-~~~l~vDaN~~w~~~~A~~~~~~L~~~~l 257 (409)
..+.-..+++++.+.|-+.+.+-+. .+.+.-.+-++++++. .+ -+++++. .+-++.++-.+..+.+.+.+.
T Consensus 72 ~~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlE-t~~L~~e~i~~a~~~~~~aga 150 (221)
T PRK00507 72 TTAVKAFEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIE-TCLLTDEEKVKACEIAKEAGA 150 (221)
T ss_pred hHHHHHHHHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEee-cCcCCHHHHHHHHHHHHHhCC
Confidence 4444456678888899999987653 3455555667777775 33 3677887 455788887788888888886
Q ss_pred CCceeecCCCC----CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHH
Q 015289 258 TPVLFEQPVHR----DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIE 330 (409)
Q Consensus 258 ~~~~iEeP~~~----~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~ 330 (409)
. ||---.-. -..+..+.+++..+. .++|-.-=-+.+..++..++++|+ + ++|.....++.+
T Consensus 151 d--fIKTsTG~~~~gat~~~v~~m~~~~~~--~~~IKasGGIrt~~~a~~~i~aGA-~-------riGtS~~~~i~~ 215 (221)
T PRK00507 151 D--FVKTSTGFSTGGATVEDVKLMRETVGP--RVGVKASGGIRTLEDALAMIEAGA-T-------RLGTSAGVAILK 215 (221)
T ss_pred C--EEEcCCCCCCCCCCHHHHHHHHHHhCC--CceEEeeCCcCCHHHHHHHHHcCc-c-------eEccCcHHHHHh
Confidence 4 77653221 234445555443332 356655557889999999999885 3 346444455443
No 481
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=22.61 E-value=7.8e+02 Score=24.56 Aligned_cols=122 Identities=16% Similarity=0.213 Sum_probs=74.5
Q ss_pred HHHHHHHHH--cCCCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHh---CCCCC--cee
Q 015289 191 AELASKYRK--QGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE---MGVTP--VLF 262 (409)
Q Consensus 191 ~~~~~~~~~--~Gf~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~---~~l~~--~~i 262 (409)
.+.++++++ .|...+=+.+.. .-+.-++.++.||+.+|+..|+ +..--|.+.|..++..=.+ -|+.+ ...
T Consensus 110 ~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vI--aGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCt 187 (346)
T PRK05096 110 FEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTIC--AGNVVTGEMVEELILSGADIVKVGIGPGSVCT 187 (346)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEE--EecccCHHHHHHHHHcCCCEEEEcccCCcccc
Confidence 455666666 488888888763 2345677889999999997766 3344566666554442111 01100 001
Q ss_pred ecCC---CCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 263 EQPV---HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 263 EeP~---~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
=+-. -.-++....+.++.+ +..++||.+|--+....|+.+.+..|+ |.+++-
T Consensus 188 Tr~vtGvG~PQltAV~~~a~~a-~~~gvpiIADGGi~~sGDI~KAlaaGA-d~VMlG 242 (346)
T PRK05096 188 TRVKTGVGYPQLSAVIECADAA-HGLGGQIVSDGGCTVPGDVAKAFGGGA-DFVMLG 242 (346)
T ss_pred CccccccChhHHHHHHHHHHHH-HHcCCCEEecCCcccccHHHHHHHcCC-CEEEeC
Confidence 1100 011344444444433 367899999999999999999999885 887663
No 482
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=22.54 E-value=8.3e+02 Score=24.85 Aligned_cols=155 Identities=18% Similarity=0.233 Sum_probs=85.0
Q ss_pred eecCCCHHHHHHHHHHHHHcCCCeEEEecCCCh--hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 015289 181 TIPIVSPAEAAELASKYRKQGFTTLKLKVGKNL--KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (409)
Q Consensus 181 ~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~--~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (409)
.+...++++..+.++.+.+.|.+.+++ |.+. ....+.++++++.++...+..|..-.=.... .++.+.+.+..
T Consensus 9 alD~~~~~~~~~~~~~~~~~Gv~~ie~--g~p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~g~~---~v~~a~~aGAd 83 (430)
T PRK07028 9 ALDLLELDRAVEIAKEAVAGGADWIEA--GTPLIKSEGMNAIRTLRKNFPDHTIVADMKTMDTGAI---EVEMAAKAGAD 83 (430)
T ss_pred EeccCCHHHHHHHHHHHHhcCCcEEEe--CCHHHHHhhHHHHHHHHHHCCCCEEEEEeeeccchHH---HHHHHHHcCCC
Confidence 345567888888888888899999974 4222 3456678888877666677777543322222 44555555543
Q ss_pred CceeecCCCCCCHHHHHHhHHHhhccCCCeEEeC-CCCCC-HHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHH
Q 015289 259 PVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD-ESCRS-LDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVV 332 (409)
Q Consensus 259 ~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~d-Es~~~-~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A 332 (409)
++==|...++ ....++.+..+ +.++++..| =+..+ ...++.+.+.| +|++.+.+...+ ....-.+.++.
T Consensus 84 --gV~v~g~~~~-~~~~~~i~~a~-~~G~~~~~g~~s~~t~~e~~~~a~~~G-aD~I~~~pg~~~~~~~~~~~~~l~~l~ 158 (430)
T PRK07028 84 --IVCILGLADD-STIEDAVRAAR-KYGVRLMADLINVPDPVKRAVELEELG-VDYINVHVGIDQQMLGKDPLELLKEVS 158 (430)
T ss_pred --EEEEecCCCh-HHHHHHHHHHH-HcCCEEEEEecCCCCHHHHHHHHHhcC-CCEEEEEeccchhhcCCChHHHHHHHH
Confidence 2221111121 11222222222 357787765 35444 34456666655 799877664311 11112333444
Q ss_pred HHcCCcEEEccCC
Q 015289 333 RASGLNLMIGGMV 345 (409)
Q Consensus 333 ~~~gi~~~~~~~~ 345 (409)
+..+++++.++-.
T Consensus 159 ~~~~iPI~a~GGI 171 (430)
T PRK07028 159 EEVSIPIAVAGGL 171 (430)
T ss_pred hhCCCcEEEECCC
Confidence 5567888776543
No 483
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=22.47 E-value=4.3e+02 Score=25.85 Aligned_cols=48 Identities=25% Similarity=0.231 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCChh----HHHHHHHHHHhhCCCcEE
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGKNLK----EDIEVLRAIRAVHPDSSF 232 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~----~d~~~l~avr~~~~~~~l 232 (409)
.+++++.+.++.+.+.|++.|-+--|.++. .-.+.++.+++.++++.+
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~ 123 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHI 123 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCC
Confidence 578899888888888999998885442322 223567777776666543
No 484
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=22.46 E-value=7.3e+02 Score=24.16 Aligned_cols=105 Identities=17% Similarity=0.164 Sum_probs=66.7
Q ss_pred HHHHHcCCCeEEEecCC--C--------hhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeec
Q 015289 195 SKYRKQGFTTLKLKVGK--N--------LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 264 (409)
Q Consensus 195 ~~~~~~Gf~~~KiKvG~--~--------~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEe 264 (409)
+-..+.||..+-+.+|- | .-.+.+.++++++.. ++.++.=..-++ ..-++.|.+.++. +|-+
T Consensus 31 ~iae~~g~~~v~~~~~~psd~~~~gg~~Rm~~p~~I~aIk~~V-~iPVigk~Righ-----~~Ea~~L~~~GvD--iID~ 102 (293)
T PRK04180 31 KIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIEEIMDAV-SIPVMAKARIGH-----FVEAQILEALGVD--YIDE 102 (293)
T ss_pred HHHHHhChHHHHHccCCCchHhhcCCeeecCCHHHHHHHHHhC-CCCeEEeehhhH-----HHHHHHHHHcCCC--EEec
Confidence 33344677777665551 1 124567777888864 555665444444 4455778888875 7743
Q ss_pred ---CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 265 ---PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 265 ---P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
+.|.+ +.+... ++++++|++.| +.++.+..+.++.| +|++.-+
T Consensus 103 Te~lrpad--~~~~~~----K~~f~~~fmad--~~~l~EAlrai~~G-admI~Tt 148 (293)
T PRK04180 103 SEVLTPAD--EEYHID----KWDFTVPFVCG--ARNLGEALRRIAEG-AAMIRTK 148 (293)
T ss_pred cCCCCchH--HHHHHH----HHHcCCCEEcc--CCCHHHHHHHHHCC-CCeeecc
Confidence 33322 223333 34678999995 67888999999988 5999887
No 485
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=22.42 E-value=6.2e+02 Score=23.35 Aligned_cols=128 Identities=17% Similarity=0.241 Sum_probs=74.9
Q ss_pred eecCCCHHHHHHHHHHHHHcCCCeEEEecC-----CChhHHHHHHHHHHhhCCCcEEEEeCCCC-CCHHHHHHHHHHHHh
Q 015289 181 TIPIVSPAEAAELASKYRKQGFTTLKLKVG-----KNLKEDIEVLRAIRAVHPDSSFILDANEG-YKPQEAVEVLEKLYE 254 (409)
Q Consensus 181 ~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG-----~~~~~d~~~l~avr~~~~~~~l~vDaN~~-w~~~~A~~~~~~L~~ 254 (409)
|+-..++..+.++++++.+.|...+-+.+- +++..-.+.++++|+..|++.+ |++-- -+++ .+++.+.+
T Consensus 12 Si~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~l--DvHLm~~~p~---~~i~~~~~ 86 (228)
T PTZ00170 12 SILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFL--DCHLMVSNPE---KWVDDFAK 86 (228)
T ss_pred hHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCE--EEEECCCCHH---HHHHHHHH
Confidence 333456778888899988899999988874 4555667889999987665443 54433 2344 45677777
Q ss_pred CCCCCceeecCCCC-CC-H-HHHHHhHHHhhccCCC--eEEeCCCCCCHHHHHHHHHcCCCCEE---EeCCCCCc
Q 015289 255 MGVTPVLFEQPVHR-DD-W-EGLGHVSHIAKDKFGV--SVAADESCRSLDDVKKIVKGNLADVI---NIKLAKVG 321 (409)
Q Consensus 255 ~~l~~~~iEeP~~~-~d-~-~~~~~l~~~~~~~~~i--pIa~dEs~~~~~~~~~~i~~~a~div---~~k~~~~G 321 (409)
.|.. ++==.... .+ + ..++.++ +.+. -|+.. ..+...++.++++...+|.| .+.++.-|
T Consensus 87 ~Gad--~itvH~ea~~~~~~~~l~~ik-----~~G~~~gval~-p~t~~e~l~~~l~~~~vD~Vl~m~v~pG~~g 153 (228)
T PTZ00170 87 AGAS--QFTFHIEATEDDPKAVARKIR-----EAGMKVGVAIK-PKTPVEVLFPLIDTDLVDMVLVMTVEPGFGG 153 (228)
T ss_pred cCCC--EEEEeccCCchHHHHHHHHHH-----HCCCeEEEEEC-CCCCHHHHHHHHccchhhhHHhhhcccCCCC
Confidence 7754 33211111 12 2 1222222 2233 34433 33577788888755556765 56666656
No 486
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=22.27 E-value=6.4e+02 Score=24.50 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=29.8
Q ss_pred CHHHHHHhHHHhhccCCCeEE--eCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 270 DWEGLGHVSHIAKDKFGVSVA--ADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 270 d~~~~~~l~~~~~~~~~ipIa--~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+++.++++.+ ...+||. +-=.+.++.++..+++.|+ |.+.+
T Consensus 191 ~~elL~ei~~----~~~iPVV~~AeGGI~TPedaa~vme~GA-dgVaV 233 (293)
T PRK04180 191 PYELVKEVAE----LGRLPVVNFAAGGIATPADAALMMQLGA-DGVFV 233 (293)
T ss_pred CHHHHHHHHH----hCCCCEEEEEeCCCCCHHHHHHHHHhCC-CEEEE
Confidence 5677888764 4579996 3335789999999999885 66543
No 487
>KOG4141 consensus DNA repair and recombination protein RAD52/RAD22 [Replication, recombination and repair]
Probab=22.10 E-value=1.2e+02 Score=27.88 Aligned_cols=42 Identities=14% Similarity=0.394 Sum_probs=29.3
Q ss_pred eeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCc----eEEEEe
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGC----VGWGEA 93 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~----~G~GE~ 93 (409)
-++-|+++.+..+.. .-+.+.-.-+++|||+..||. +|||++
T Consensus 84 Ws~sI~~~~vd~~d~--------~~~k~~vg~~a~VrVtLkDGtyhEDiGyG~~ 129 (222)
T KOG4141|consen 84 WSSSITSVNVDFVDE--------EEGKFSVGVSAIVRVTLKDGTYHEDIGYGSA 129 (222)
T ss_pred ccccceeeecceecc--------ccCeEEEeEEEEEEEEEecCccccccccccc
Confidence 457888888887764 223333346889999999994 488843
No 488
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=22.02 E-value=1.4e+02 Score=30.19 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHcCCCCEEEeCCCC-Cc--HHH--HHHHHHHHHHcCCcEEE
Q 015289 295 CRSLDDVKKIVKGNLADVINIKLAK-VG--VLG--ALEIIEVVRASGLNLMI 341 (409)
Q Consensus 295 ~~~~~~~~~~i~~~a~div~~k~~~-~G--i~~--~~~i~~~A~~~gi~~~~ 341 (409)
-.++..++.+++.+.+-++.+.|+. || .++ ..+++++|+++|+.+.-
T Consensus 186 eIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIa 237 (447)
T KOG0259|consen 186 EIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIA 237 (447)
T ss_pred eechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEe
Confidence 3466678888888988899999987 78 443 68999999999998754
No 489
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=22.01 E-value=7.8e+02 Score=24.37 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEcc
Q 015289 322 VLGALEIIEVVRASGLNLMIGG 343 (409)
Q Consensus 322 i~~~~~i~~~A~~~gi~~~~~~ 343 (409)
....++.+..++++|+++.+..
T Consensus 140 f~~~~~~i~~l~~~g~~v~i~~ 161 (378)
T PRK05301 140 FAKKLAVARLVKAHGYPLTLNA 161 (378)
T ss_pred HHHHHHHHHHHHHCCCceEEEE
Confidence 3445556666666666665433
No 490
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=21.99 E-value=5.9e+02 Score=22.90 Aligned_cols=116 Identities=14% Similarity=0.210 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecC------CChhHHHHHHHHHHhhCCCcEE--EEeCCCCCCHHHHHHHHHHHHhCCC
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVG------KNLKEDIEVLRAIRAVHPDSSF--ILDANEGYKPQEAVEVLEKLYEMGV 257 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG------~~~~~d~~~l~avr~~~~~~~l--~vDaN~~w~~~~A~~~~~~L~~~~l 257 (409)
+.+....+++++++.|-..+.+-+. .+.+.-.+.+.++++.-.++.+ ++.. +..+.++-....+...+.|.
T Consensus 67 ~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~-~~l~~~~i~~a~ria~e~Ga 145 (203)
T cd00959 67 TTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILET-GLLTDEEIIKACEIAIEAGA 145 (203)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEec-CCCCHHHHHHHHHHHHHhCC
Confidence 4455567788889999999998653 2334455667778876335544 4443 33466666666777778886
Q ss_pred CCceeecC--CCC-----CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCC
Q 015289 258 TPVLFEQP--VHR-----DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 309 (409)
Q Consensus 258 ~~~~iEeP--~~~-----~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a 309 (409)
. ||--+ +.+ +|.+.+++. .+.+.++-++.|-. +..++.++++.|+
T Consensus 146 D--~IKTsTG~~~~~at~~~v~~~~~~---~~~~v~ik~aGGik--t~~~~l~~~~~g~ 197 (203)
T cd00959 146 D--FIKTSTGFGPGGATVEDVKLMKEA---VGGRVGVKAAGGIR--TLEDALAMIEAGA 197 (203)
T ss_pred C--EEEcCCCCCCCCCCHHHHHHHHHH---hCCCceEEEeCCCC--CHHHHHHHHHhCh
Confidence 4 88877 321 344444443 23344555565544 8999999998875
No 491
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=21.99 E-value=6.8e+02 Score=23.66 Aligned_cols=69 Identities=22% Similarity=0.205 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEec-CC--ChhHHHHHHHHHHhhC--CCcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKV-GK--NLKEDIEVLRAIRAVH--PDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKv-G~--~~~~d~~~l~avr~~~--~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (409)
.+++++.++++++.+.|++.+-+-. |. ..+.-.+.++.+++.. .++.+.+-. +..+. +.++.|++.|+.
T Consensus 62 ~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~-g~~~~----e~l~~Lk~aG~~ 135 (296)
T TIGR00433 62 KKVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATL-GLLDP----EQAKRLKDAGLD 135 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEecC-CCCCH----HHHHHHHHcCCC
Confidence 4678888888888888998776543 32 2222255666666531 244444322 33443 355667777754
No 492
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=21.97 E-value=5.7e+02 Score=22.72 Aligned_cols=75 Identities=15% Similarity=0.128 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCC
Q 015289 191 AELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR 268 (409)
Q Consensus 191 ~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~ 268 (409)
.+.++...++|.+.+= +|...+.-.+..+.+++.+|++.+.-= ++-++.++..+.++.+++.+-++.|+==-.|.
T Consensus 38 ~~l~~~~~~~~~~vfl--lG~~~~v~~~~~~~l~~~yP~l~i~g~-~g~f~~~~~~~i~~~I~~s~~dil~VglG~Pk 112 (177)
T TIGR00696 38 EELCQRAGKEKLPIFL--YGGKPDVLQQLKVKLIKEYPKLKIVGA-FGPLEPEERKAALAKIARSGAGIVFVGLGCPK 112 (177)
T ss_pred HHHHHHHHHcCCeEEE--ECCCHHHHHHHHHHHHHHCCCCEEEEE-CCCCChHHHHHHHHHHHHcCCCEEEEEcCCcH
Confidence 3444544556653333 355555545556777888999887653 78888777667888898887666677655554
No 493
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=21.87 E-value=8e+02 Score=27.89 Aligned_cols=86 Identities=22% Similarity=0.341 Sum_probs=57.7
Q ss_pred EEEeCCC------CCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHH----hhc-cCCCeEEe-CCCCCCHH
Q 015289 232 FILDANE------GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI----AKD-KFGVSVAA-DESCRSLD 299 (409)
Q Consensus 232 l~vDaN~------~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~----~~~-~~~ipIa~-dEs~~~~~ 299 (409)
+.++.|. +++++.+..++...-+.++ +=.+|+..-|..+..+|-+. .|+ +-+++|.. ||.-.++.
T Consensus 764 fSiGTNDLTQ~t~g~dRdd~~~fl~~y~~~~i---~~~dPf~~lD~~aV~~Li~~~v~~~r~~~~~~~vgICGE~ggdp~ 840 (879)
T PRK09279 764 FSFGTNDLTQTTFGFSRDDAGKFLPDYLEKGI---LEEDPFESLDQEGVGELVEIAVERGRATRPDLKLGICGEHGGDPA 840 (879)
T ss_pred EEEcccHHHHHHhccCccchhhhHHHHHhcCc---ccCCcchhcChHHHHHHHHHHHHHHHhcCCCCEEEECCCCccCHH
Confidence 4566673 5677777677777766665 56889987776666554432 111 13555543 68888888
Q ss_pred HHHHHHHcCCCCEEEeCCCCCc
Q 015289 300 DVKKIVKGNLADVINIKLAKVG 321 (409)
Q Consensus 300 ~~~~~i~~~a~div~~k~~~~G 321 (409)
.+..+...| +|.+...|.++-
T Consensus 841 ~i~~l~~lG-ld~vS~sP~~Vp 861 (879)
T PRK09279 841 SIEFCHKVG-LDYVSCSPYRVP 861 (879)
T ss_pred HHHHHHHCC-CCEEEECHHHHH
Confidence 888777776 799988888754
No 494
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=21.86 E-value=8.8e+02 Score=24.93 Aligned_cols=129 Identities=22% Similarity=0.135 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHhhCC--CcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCC-CeE
Q 015289 213 LKEDIEVLRAIRAVHP--DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG-VSV 289 (409)
Q Consensus 213 ~~~d~~~l~avr~~~~--~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~-ipI 289 (409)
++.-++-++.+.+.++ +.-...|.|-..+.+.+.++++.+.+.++. |.-+.-..-+.+.++.+++ .| .-|
T Consensus 229 ~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~--~~~~~~~~~~~e~l~~l~~-----aG~~~v 301 (472)
T TIGR03471 229 AESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPLGVT--WSCNARANVDYETLKVMKE-----NGLRLL 301 (472)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhhcCce--EEEEecCCCCHHHHHHHHH-----cCCCEE
Confidence 3444444555555432 223457888778888888999999988864 6544322234455555543 23 245
Q ss_pred EeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEE----ccCCchHHHHHHHHHHHccC
Q 015289 290 AAD-ESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMI----GGMVETRLAMGFAGHLSAGL 361 (409)
Q Consensus 290 a~d-Es~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~----~~~~es~i~~~~~~hlaaa~ 361 (409)
..| || .+...++. +..+ .......+.++.++++|+.+.. |-..||.-.......++..+
T Consensus 302 ~iGiES-~s~~~L~~-~~K~-----------~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l 365 (472)
T TIGR03471 302 LVGYES-GDQQILKN-IKKG-----------LTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKEL 365 (472)
T ss_pred EEcCCC-CCHHHHHH-hcCC-----------CCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 555 44 33333332 2221 1145677888999999998753 33346655566666666544
No 495
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=21.75 E-value=4.1e+02 Score=26.51 Aligned_cols=67 Identities=19% Similarity=0.317 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCC-----hhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGKN-----LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~-----~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (409)
.+++++.+.++.+.+.|.+.+-+--|.+ ++.=.+.++.+++.+|.+.+ ..+ ..+.+++ +.|++.|+.
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p~i~I--ei~-~lt~e~~----~~Lk~aGv~ 174 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLAREYFSSLAI--EVQ-PLNEEEY----KKLVEAGLD 174 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCcccc--ccc-cCCHHHH----HHHHHcCCC
Confidence 3788899999988999999888775632 33345567777776765554 333 3666654 566666653
No 496
>PLN02591 tryptophan synthase
Probab=21.68 E-value=6.9e+02 Score=23.60 Aligned_cols=57 Identities=11% Similarity=0.219 Sum_probs=35.6
Q ss_pred hccCCCeEEe-C-CC---CCCHHHH-HHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEE
Q 015289 282 KDKFGVSVAA-D-ES---CRSLDDV-KKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMI 341 (409)
Q Consensus 282 ~~~~~ipIa~-d-Es---~~~~~~~-~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~ 341 (409)
|++..+|+.+ . -+ -++.+.| +++.+.|.-.++.+|+. +.+...+...|+++|+..++
T Consensus 74 r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP---~ee~~~~~~~~~~~gl~~I~ 136 (250)
T PLN02591 74 APQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLP---LEETEALRAEAAKNGIELVL 136 (250)
T ss_pred hcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCC---HHHHHHHHHHHHHcCCeEEE
Confidence 3456677442 1 11 1244454 34445665555677775 47788999999999999765
No 497
>COG4451 RbcS Ribulose bisphosphate carboxylase small subunit [Energy production and conversion]
Probab=21.55 E-value=4.4e+02 Score=22.05 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=19.1
Q ss_pred eeeecCCCHHHHHHHHHHHHHcCC
Q 015289 179 DITIPIVSPAEAAELASKYRKQGF 202 (409)
Q Consensus 179 ~~~i~~~~~~~~~~~~~~~~~~Gf 202 (409)
+.+.+..+.++..++++.++.+||
T Consensus 13 ~s~lp~Ltd~qi~~QVrylL~QGy 36 (127)
T COG4451 13 LSSLPPLTDEQIAEQVRYLLSQGY 36 (127)
T ss_pred eecCCcCcHHHHHHHHHHHHhCCc
Confidence 444556677888999999999999
No 498
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=21.51 E-value=9.7e+02 Score=25.29 Aligned_cols=168 Identities=18% Similarity=0.152 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhC-CCcEEEEeC--C-CCCCHHHHHHHHHHHHhCCCCCce
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILDA--N-EGYKPQEAVEVLEKLYEMGVTPVL 261 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~-~~~~l~vDa--N-~~w~~~~A~~~~~~L~~~~l~~~~ 261 (409)
+.++-.+.++.+.+.|+..+-+-....-..|.+.++.+++.. .+..+..=+ . ..+.... -+-++.+.+.+....-
T Consensus 25 s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~-d~~~e~~~~~g~~~i~ 103 (524)
T PRK12344 25 SVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFKRAKELKLKHAKLAAFGSTRRAGVSAEE-DPNLQALLDAGTPVVT 103 (524)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCcCChhHHHHHHHHHHhCCCCcEEEEEeeccccCCCccc-HHHHHHHHhCCCCEEE
Confidence 667778888888889999888744222245777788887743 444444322 1 1221100 0123444455433222
Q ss_pred eecCCCC------------CCHHHHHHhHHHhhccCCCeEEe------CCCCCCHHHHHH----HHHcCCCCEEEeCCCC
Q 015289 262 FEQPVHR------------DDWEGLGHVSHIAKDKFGVSVAA------DESCRSLDDVKK----IVKGNLADVINIKLAK 319 (409)
Q Consensus 262 iEeP~~~------------~d~~~~~~l~~~~~~~~~ipIa~------dEs~~~~~~~~~----~i~~~a~div~~k~~~ 319 (409)
+--|.++ +.++...+..+.++ ..+..+.. |.+-.++..+.+ +.+.| +|.+++.=+
T Consensus 104 i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak-~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~G-ad~i~l~DT- 180 (524)
T PRK12344 104 IFGKSWDLHVTEALRTTLEENLAMIRDSVAYLK-AHGREVIFDAEHFFDGYKANPEYALATLKAAAEAG-ADWVVLCDT- 180 (524)
T ss_pred EEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHH-HcCCeEEEccccccccccCCHHHHHHHHHHHHhCC-CCeEEEccC-
Confidence 2223321 11222222222222 34556544 333344443333 34455 455554322
Q ss_pred Cc---HHHHHHHHH-HHHHcCCcEEEccCCchHHHHHHHHHHHc
Q 015289 320 VG---VLGALEIIE-VVRASGLNLMIGGMVETRLAMGFAGHLSA 359 (409)
Q Consensus 320 ~G---i~~~~~i~~-~A~~~gi~~~~~~~~es~i~~~~~~hlaa 359 (409)
+| ..+..+++. +.+..++++.+|+....+++ .+..++|
T Consensus 181 vG~~~P~~v~~li~~l~~~~~v~i~~H~HND~GlA--~ANslaA 222 (524)
T PRK12344 181 NGGTLPHEVAEIVAEVRAAPGVPLGIHAHNDSGCA--VANSLAA 222 (524)
T ss_pred CCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCChH--HHHHHHH
Confidence 25 334444443 44555888988886544444 4444444
No 499
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=21.34 E-value=7e+02 Score=23.56 Aligned_cols=129 Identities=16% Similarity=0.142 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEec--C----CChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKV--G----KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKv--G----~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (409)
+.+.+.+.++.+.+.|.+.+=+-- | -..++=.+.++.+++. ..++.+++=+.. -+.+++++.++..++.|..
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~~~~a~~a~~~G~d 97 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS-NNTAEAIELTKRAEKAGAD 97 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC-ccHHHHHHHHHHHHHcCCC
Confidence 566777888888888988876542 2 1223334445666665 456777765544 4778889999999998865
Q ss_pred CceeecCCC--CCCHHHHHHhHHHhhccCCCeEEeCC------CCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 259 PVLFEQPVH--RDDWEGLGHVSHIAKDKFGVSVAADE------SCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 259 ~~~iEeP~~--~~d~~~~~~l~~~~~~~~~ipIa~dE------s~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
-..+=-|.- ..+-+-++..++ +.+.+++||..=- ...+...+.++.+. -.++-+|-+
T Consensus 98 ~v~~~~P~~~~~~~~~l~~~~~~-ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~--p~v~giK~s 162 (284)
T cd00950 98 AALVVTPYYNKPSQEGLYAHFKA-IAEATDLPVILYNVPGRTGVNIEPETVLRLAEH--PNIVGIKEA 162 (284)
T ss_pred EEEEcccccCCCCHHHHHHHHHH-HHhcCCCCEEEEEChhHhCCCCCHHHHHHHhcC--CCEEEEEEC
Confidence 334444422 122122222222 2235678887432 13355666777753 467777754
No 500
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=21.33 E-value=6.5e+02 Score=23.19 Aligned_cols=122 Identities=13% Similarity=0.162 Sum_probs=65.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHH--HHHHhC---CCC
Q 015289 184 IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVL--EKLYEM---GVT 258 (409)
Q Consensus 184 ~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~--~~L~~~---~l~ 258 (409)
..+|+... +.+.+.|-..+-+........-.+.++.+++.+ ..+.+..|..++.++...++ ..++-. .++
T Consensus 74 ~~~p~~~i---~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G--~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~ 148 (228)
T PTZ00170 74 VSNPEKWV---DDFAKAGASQFTFHIEATEDDPKAVARKIREAG--MKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVE 148 (228)
T ss_pred CCCHHHHH---HHHHHcCCCEEEEeccCCchHHHHHHHHHHHCC--CeEEEEECCCCCHHHHHHHHccchhhhHHhhhcc
Confidence 34666654 445567888888887532211234566677755 56778888888888876665 322211 111
Q ss_pred CceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 259 PVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 259 ~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+-+=.|++.+.-++.++++++. ...+.|+.|=.+ +...+..+.+.| +|++.+
T Consensus 149 pG~~gq~~~~~~~~ki~~~~~~---~~~~~I~VdGGI-~~~ti~~~~~aG-ad~iVv 200 (228)
T PTZ00170 149 PGFGGQSFMHDMMPKVRELRKR---YPHLNIQVDGGI-NLETIDIAADAG-ANVIVA 200 (228)
T ss_pred cCCCCcEecHHHHHHHHHHHHh---cccCeEEECCCC-CHHHHHHHHHcC-CCEEEE
Confidence 1133455554434444554431 112445444432 234555666666 477654
Done!