Query 015290
Match_columns 409
No_of_seqs 455 out of 1472
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 04:55:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 3E-46 6.4E-51 304.9 22.8 281 29-408 154-475 (480)
2 KOG0271 Notchless-like WD40 re 100.0 2.5E-45 5.5E-50 299.4 25.3 286 28-408 111-433 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.7E-44 3.8E-49 298.1 21.6 281 28-408 171-454 (459)
4 KOG0286 G-protein beta subunit 100.0 3.7E-39 8E-44 254.6 29.7 282 29-408 52-339 (343)
5 KOG1354 Serine/threonine prote 100.0 3.3E-41 7.1E-46 272.0 18.1 347 8-407 6-352 (433)
6 KOG0279 G protein beta subunit 100.0 2.2E-37 4.7E-42 243.1 28.9 292 28-408 11-307 (315)
7 KOG0273 Beta-transducin family 100.0 7.2E-38 1.6E-42 262.4 27.9 275 31-409 234-518 (524)
8 KOG0265 U5 snRNP-specific prot 100.0 1.1E-37 2.4E-42 247.2 26.0 286 28-408 43-332 (338)
9 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-38 2.3E-43 263.9 18.0 255 12-354 200-458 (459)
10 KOG0295 WD40 repeat-containing 100.0 5.9E-37 1.3E-41 249.1 21.6 281 28-408 104-400 (406)
11 KOG0318 WD40 repeat stress pro 100.0 1.3E-35 2.8E-40 252.2 30.5 298 12-408 178-554 (603)
12 KOG0263 Transcription initiati 100.0 3.9E-37 8.5E-42 273.8 21.2 260 32-408 378-643 (707)
13 KOG0285 Pleiotropic regulator 100.0 5.5E-36 1.2E-40 243.0 25.1 292 13-408 140-433 (460)
14 KOG0315 G-protein beta subunit 100.0 1.9E-35 4.1E-40 228.5 25.6 271 44-408 10-282 (311)
15 COG5170 CDC55 Serine/threonine 100.0 2.7E-37 5.8E-42 246.6 15.6 357 11-408 5-361 (460)
16 KOG0315 G-protein beta subunit 100.0 2.7E-35 5.9E-40 227.7 24.7 266 28-372 35-303 (311)
17 KOG0279 G protein beta subunit 100.0 1.5E-34 3.2E-39 227.2 25.5 253 28-356 59-313 (315)
18 KOG0284 Polyadenylation factor 100.0 5.8E-36 1.3E-40 246.7 17.9 275 32-408 96-374 (464)
19 KOG0263 Transcription initiati 100.0 9.2E-35 2E-39 258.7 23.8 203 27-357 446-650 (707)
20 KOG0291 WD40-repeat-containing 100.0 1.6E-33 3.5E-38 249.1 30.4 309 26-407 344-703 (893)
21 KOG0286 G-protein beta subunit 100.0 2.1E-33 4.5E-38 222.2 25.6 249 90-408 44-297 (343)
22 KOG0291 WD40-repeat-containing 100.0 7.1E-33 1.5E-37 245.1 28.2 290 32-409 307-607 (893)
23 KOG0296 Angio-associated migra 100.0 1.1E-32 2.4E-37 224.4 26.5 282 29-407 61-391 (399)
24 KOG0282 mRNA splicing factor [ 100.0 3.8E-34 8.3E-39 241.0 18.1 288 26-408 208-499 (503)
25 KOG0293 WD40 repeat-containing 100.0 3.5E-33 7.6E-38 230.8 22.9 281 31-408 223-507 (519)
26 KOG0643 Translation initiation 100.0 1.2E-32 2.5E-37 215.3 24.4 286 25-408 3-311 (327)
27 cd00200 WD40 WD40 domain, foun 100.0 1.2E-31 2.5E-36 232.9 33.2 277 30-408 7-285 (289)
28 KOG0645 WD40 repeat protein [G 100.0 1.1E-31 2.5E-36 210.2 29.3 282 29-408 11-305 (312)
29 KOG0273 Beta-transducin family 100.0 1.2E-32 2.5E-37 231.3 24.1 293 27-409 173-477 (524)
30 KOG0266 WD40 repeat-containing 100.0 7.9E-32 1.7E-36 245.7 30.4 280 31-407 158-447 (456)
31 KOG0313 Microtubule binding pr 100.0 4.5E-32 9.8E-37 221.9 24.2 300 13-408 86-412 (423)
32 KOG0283 WD40 repeat-containing 100.0 1.7E-32 3.7E-37 246.3 22.1 269 30-408 265-570 (712)
33 PLN00181 protein SPA1-RELATED; 100.0 1.4E-30 3E-35 254.9 37.4 304 28-408 479-787 (793)
34 KOG0319 WD40-repeat-containing 100.0 4.9E-32 1.1E-36 239.3 24.3 282 30-408 321-613 (775)
35 KOG0316 Conserved WD40 repeat- 100.0 4.8E-32 1.1E-36 208.1 20.4 233 31-408 16-251 (307)
36 KOG0645 WD40 repeat protein [G 100.0 3.1E-30 6.8E-35 202.1 26.9 257 13-356 49-311 (312)
37 KOG0284 Polyadenylation factor 100.0 2.7E-32 5.9E-37 225.1 16.2 244 30-357 136-381 (464)
38 KOG0276 Vesicle coat complex C 100.0 2.2E-31 4.7E-36 231.1 21.6 236 31-408 12-251 (794)
39 KOG0292 Vesicle coat complex C 100.0 5.4E-31 1.2E-35 237.1 24.6 284 32-408 9-316 (1202)
40 KOG0275 Conserved WD40 repeat- 100.0 1.3E-31 2.8E-36 215.2 17.8 290 31-408 212-503 (508)
41 KOG0285 Pleiotropic regulator 100.0 2.3E-31 5E-36 216.2 18.3 245 88-408 138-383 (460)
42 KOG0281 Beta-TrCP (transducin 100.0 6.4E-32 1.4E-36 218.8 14.0 266 31-408 196-471 (499)
43 KOG1407 WD40 repeat protein [F 100.0 5.7E-30 1.2E-34 199.7 24.0 276 29-406 17-294 (313)
44 KOG0295 WD40 repeat-containing 100.0 1E-30 2.2E-35 212.9 20.0 243 28-355 146-405 (406)
45 KOG0277 Peroxisomal targeting 100.0 7.5E-31 1.6E-35 203.8 17.8 238 32-408 60-303 (311)
46 KOG0319 WD40-repeat-containing 100.0 4.6E-30 9.9E-35 226.9 24.3 304 30-408 103-529 (775)
47 KOG0772 Uncharacterized conser 100.0 2.6E-30 5.7E-35 219.6 19.1 265 25-404 160-429 (641)
48 KOG0268 Sof1-like rRNA process 100.0 1.4E-30 3E-35 212.1 15.6 288 14-408 48-339 (433)
49 KOG0318 WD40 repeat stress pro 100.0 3.3E-28 7.1E-33 207.4 28.3 282 30-409 57-345 (603)
50 KOG0305 Anaphase promoting com 100.0 5.7E-29 1.2E-33 218.0 23.6 232 32-408 217-455 (484)
51 PTZ00421 coronin; Provisional 100.0 4.3E-28 9.3E-33 220.2 29.9 270 15-408 5-284 (493)
52 KOG0288 WD40 repeat protein Ti 100.0 6.8E-30 1.5E-34 211.4 15.7 283 29-409 172-456 (459)
53 PTZ00421 coronin; Provisional 100.0 1.4E-27 2.9E-32 217.0 30.5 220 28-367 71-300 (493)
54 KOG0640 mRNA cleavage stimulat 100.0 6.7E-29 1.4E-33 198.4 19.2 305 29-407 109-419 (430)
55 KOG0306 WD40-repeat-containing 100.0 4.1E-28 9E-33 215.0 25.3 282 26-408 367-658 (888)
56 KOG2096 WD40 repeat protein [G 100.0 7.4E-28 1.6E-32 193.1 24.1 307 27-404 81-393 (420)
57 KOG0266 WD40 repeat-containing 100.0 6.8E-28 1.5E-32 219.9 27.4 245 29-356 200-454 (456)
58 KOG0641 WD40 repeat protein [G 100.0 1.2E-26 2.7E-31 177.6 29.1 302 31-408 31-343 (350)
59 KOG0306 WD40-repeat-containing 100.0 1.1E-27 2.3E-32 212.4 26.4 179 193-408 393-574 (888)
60 KOG0278 Serine/threonine kinas 100.0 5.7E-29 1.2E-33 193.0 16.0 277 27-408 9-291 (334)
61 KOG0292 Vesicle coat complex C 100.0 7.6E-28 1.6E-32 217.0 25.6 249 28-356 47-321 (1202)
62 KOG0276 Vesicle coat complex C 100.0 4.5E-28 9.8E-33 210.6 21.3 235 32-408 55-293 (794)
63 KOG1332 Vesicle coat complex C 100.0 2.5E-28 5.5E-33 188.7 17.0 250 28-408 7-280 (299)
64 KOG0310 Conserved WD40 repeat- 100.0 1.4E-27 3.1E-32 201.9 22.9 234 31-408 67-303 (487)
65 KOG0275 Conserved WD40 repeat- 100.0 1.5E-28 3.2E-33 197.8 15.8 244 114-407 214-460 (508)
66 KOG1446 Histone H3 (Lys4) meth 100.0 3.2E-26 7E-31 183.9 27.9 240 31-408 13-256 (311)
67 PLN00181 protein SPA1-RELATED; 100.0 1.5E-26 3.3E-31 226.6 31.2 256 29-355 529-792 (793)
68 KOG0281 Beta-TrCP (transducin 100.0 6.5E-28 1.4E-32 195.7 16.0 244 28-357 233-478 (499)
69 KOG0973 Histone transcription 100.0 4E-27 8.7E-32 217.3 23.1 281 32-408 13-349 (942)
70 KOG0269 WD40 repeat-containing 100.0 5.6E-28 1.2E-32 214.9 16.4 238 34-408 89-334 (839)
71 KOG0277 Peroxisomal targeting 100.0 8.6E-27 1.9E-31 181.3 19.6 196 112-408 59-259 (311)
72 KOG0772 Uncharacterized conser 100.0 5.2E-27 1.1E-31 199.7 19.8 256 32-408 214-481 (641)
73 KOG0300 WD40 repeat-containing 100.0 6.9E-27 1.5E-31 187.6 19.3 290 29-408 145-470 (481)
74 KOG0296 Angio-associated migra 100.0 4.7E-26 1E-30 186.0 24.3 258 12-356 89-398 (399)
75 PTZ00420 coronin; Provisional 100.0 1.7E-25 3.8E-30 204.2 30.6 212 28-357 70-294 (568)
76 KOG0310 Conserved WD40 repeat- 100.0 6.5E-27 1.4E-31 197.9 19.6 234 32-408 26-262 (487)
77 KOG0265 U5 snRNP-specific prot 100.0 8.1E-27 1.8E-31 185.7 18.6 200 93-408 39-240 (338)
78 PTZ00420 coronin; Provisional 100.0 1.9E-25 4.1E-30 203.9 29.7 230 50-408 50-287 (568)
79 KOG0308 Conserved WD40 repeat- 100.0 4.4E-27 9.6E-32 205.4 17.2 250 30-408 19-279 (735)
80 KOG0299 U3 snoRNP-associated p 100.0 6.6E-26 1.4E-30 190.4 23.6 296 31-402 141-443 (479)
81 KOG0282 mRNA splicing factor [ 100.0 2.5E-27 5.4E-32 200.1 15.1 246 92-408 205-456 (503)
82 KOG0647 mRNA export protein (c 100.0 1.5E-25 3.2E-30 178.7 24.0 281 31-402 26-311 (347)
83 KOG0289 mRNA splicing factor [ 99.9 1.1E-25 2.4E-30 187.7 24.0 278 32-407 219-499 (506)
84 KOG0313 Microtubule binding pr 99.9 2.1E-26 4.6E-31 188.9 19.0 264 26-356 138-418 (423)
85 cd00200 WD40 WD40 domain, foun 99.9 4.3E-25 9.3E-30 191.6 28.6 240 29-354 48-289 (289)
86 KOG0278 Serine/threonine kinas 99.9 1.2E-26 2.6E-31 180.1 15.4 209 25-362 93-302 (334)
87 KOG2055 WD40 repeat protein [G 99.9 1.8E-25 3.8E-30 187.9 23.5 290 32-409 213-507 (514)
88 KOG0264 Nucleosome remodeling 99.9 4.9E-26 1.1E-30 191.1 20.0 258 29-408 121-398 (422)
89 KOG0316 Conserved WD40 repeat- 99.9 3.2E-25 7E-30 170.7 21.5 234 29-405 56-291 (307)
90 KOG1036 Mitotic spindle checkp 99.9 9.1E-25 2E-29 174.8 24.8 280 32-404 13-294 (323)
91 KOG0274 Cdc4 and related F-box 99.9 3.9E-25 8.4E-30 201.3 25.7 267 31-408 207-476 (537)
92 KOG0293 WD40 repeat-containing 99.9 3.2E-26 7E-31 189.7 16.9 245 27-356 264-513 (519)
93 KOG4283 Transcription-coupled 99.9 2.2E-24 4.8E-29 171.5 25.1 301 31-408 42-359 (397)
94 KOG2445 Nuclear pore complex c 99.9 2.3E-24 5.1E-29 172.4 24.7 263 29-408 10-312 (361)
95 KOG0294 WD40 repeat-containing 99.9 9.9E-25 2.1E-29 175.0 22.6 245 10-408 27-275 (362)
96 KOG0299 U3 snoRNP-associated p 99.9 9.2E-25 2E-29 183.6 21.8 248 30-355 200-455 (479)
97 KOG0973 Histone transcription 99.9 1.3E-24 2.8E-29 200.9 24.7 268 28-357 65-356 (942)
98 KOG0641 WD40 repeat protein [G 99.9 1.3E-23 2.8E-28 161.1 25.7 254 31-356 88-349 (350)
99 KOG0288 WD40 repeat protein Ti 99.9 2E-25 4.4E-30 185.1 16.6 239 31-353 218-458 (459)
100 KOG0264 Nucleosome remodeling 99.9 1.1E-24 2.4E-29 183.0 19.4 228 26-356 171-404 (422)
101 KOG0274 Cdc4 and related F-box 99.9 1.6E-24 3.4E-29 197.3 21.9 257 13-365 232-490 (537)
102 KOG1273 WD40 repeat protein [G 99.9 7.1E-24 1.5E-28 170.2 22.0 279 35-402 26-311 (405)
103 KOG0283 WD40 repeat-containing 99.9 2.2E-24 4.8E-29 194.5 21.0 217 19-356 356-576 (712)
104 KOG1274 WD40 repeat protein [G 99.9 4E-23 8.6E-28 187.7 27.4 278 30-405 11-291 (933)
105 KOG0639 Transducin-like enhanc 99.9 2.3E-24 5.1E-29 183.1 18.2 244 26-409 413-658 (705)
106 KOG1446 Histone H3 (Lys4) meth 99.9 8.9E-23 1.9E-27 164.2 26.1 234 32-404 56-295 (311)
107 KOG1407 WD40 repeat protein [F 99.9 1.9E-24 4.2E-29 169.0 16.1 215 95-408 14-255 (313)
108 KOG0302 Ribosome Assembly prot 99.9 7.9E-24 1.7E-28 173.8 19.9 227 28-357 147-379 (440)
109 KOG1539 WD repeat protein [Gen 99.9 1.8E-22 3.9E-27 181.5 29.9 312 31-406 201-639 (910)
110 KOG0646 WD40 repeat protein [G 99.9 1.2E-23 2.7E-28 177.2 21.1 237 31-372 80-322 (476)
111 KOG0267 Microtubule severing p 99.9 3.1E-25 6.6E-30 196.2 10.4 232 30-405 26-259 (825)
112 KOG0301 Phospholipase A2-activ 99.9 3.6E-23 7.8E-28 182.4 23.1 268 30-408 12-282 (745)
113 KOG0289 mRNA splicing factor [ 99.9 7.8E-23 1.7E-27 170.9 23.3 247 28-355 257-505 (506)
114 KOG0640 mRNA cleavage stimulat 99.9 6.7E-23 1.4E-27 164.3 20.4 224 114-368 113-346 (430)
115 KOG1332 Vesicle coat complex C 99.9 2.6E-23 5.7E-28 161.1 17.3 220 26-360 50-290 (299)
116 KOG1063 RNA polymerase II elon 99.9 1.9E-22 4.2E-27 177.8 21.9 331 28-408 187-596 (764)
117 KOG4328 WD40 protein [Function 99.9 1.4E-22 3.1E-27 170.4 19.8 251 31-406 185-442 (498)
118 KOG1408 WD40 repeat protein [F 99.9 3.7E-23 8E-28 183.0 16.9 249 26-408 453-707 (1080)
119 KOG0647 mRNA export protein (c 99.9 4.6E-22 9.9E-27 158.9 20.7 248 13-345 54-311 (347)
120 KOG2048 WD40 repeat protein [G 99.9 7.4E-21 1.6E-25 167.6 28.9 283 32-408 25-313 (691)
121 KOG0643 Translation initiation 99.9 9.5E-22 2.1E-26 154.5 20.9 199 96-407 5-213 (327)
122 KOG0308 Conserved WD40 repeat- 99.9 7.6E-23 1.7E-27 179.1 16.3 235 10-358 48-287 (735)
123 KOG0650 WD40 repeat nucleolar 99.9 3.5E-22 7.6E-27 173.4 20.0 281 18-408 386-674 (733)
124 KOG0300 WD40 repeat-containing 99.9 1.9E-21 4.2E-26 156.5 21.5 280 23-357 181-477 (481)
125 KOG4378 Nuclear protein COP1 [ 99.9 3.3E-22 7.2E-27 169.9 17.1 222 34-396 81-305 (673)
126 KOG0639 Transducin-like enhanc 99.9 3.4E-22 7.4E-27 170.1 17.1 249 13-407 444-697 (705)
127 KOG2106 Uncharacterized conser 99.9 8.5E-21 1.9E-25 161.7 25.5 268 30-406 244-513 (626)
128 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5E-20 1.1E-24 161.4 30.9 257 32-371 30-293 (300)
129 KOG0301 Phospholipase A2-activ 99.9 1.6E-21 3.4E-26 172.2 20.7 232 31-357 56-289 (745)
130 KOG0267 Microtubule severing p 99.9 2.2E-23 4.8E-28 184.6 8.8 191 29-347 67-258 (825)
131 KOG0305 Anaphase promoting com 99.9 2.5E-21 5.4E-26 170.2 21.4 224 32-403 177-406 (484)
132 KOG0269 WD40 repeat-containing 99.9 8.8E-22 1.9E-26 175.8 18.1 240 32-404 39-284 (839)
133 KOG1538 Uncharacterized conser 99.9 7.5E-21 1.6E-25 167.4 22.5 269 34-409 14-288 (1081)
134 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.2E-19 2.6E-24 159.0 30.5 266 44-408 1-273 (300)
135 KOG1034 Transcriptional repres 99.9 7.1E-22 1.5E-26 159.6 14.5 261 30-408 87-377 (385)
136 KOG0268 Sof1-like rRNA process 99.9 1.3E-22 2.7E-27 165.9 10.3 237 93-408 58-296 (433)
137 KOG0321 WD40 repeat-containing 99.9 2.7E-21 5.9E-26 169.2 18.7 282 26-408 94-385 (720)
138 KOG2106 Uncharacterized conser 99.9 6.9E-20 1.5E-24 156.3 26.3 315 25-408 97-471 (626)
139 KOG1063 RNA polymerase II elon 99.9 2.1E-20 4.6E-25 165.1 23.7 299 28-407 50-384 (764)
140 KOG0302 Ribosome Assembly prot 99.9 3.8E-21 8.3E-26 158.1 17.1 167 207-409 201-373 (440)
141 KOG0307 Vesicle coat complex C 99.9 7.8E-22 1.7E-26 183.7 14.5 266 13-409 43-322 (1049)
142 KOG2919 Guanine nucleotide-bin 99.9 4.3E-20 9.4E-25 149.1 22.5 299 33-405 50-361 (406)
143 KOG4283 Transcription-coupled 99.9 4.8E-21 1E-25 152.7 16.8 225 114-358 44-278 (397)
144 KOG0270 WD40 repeat-containing 99.9 3.9E-21 8.6E-26 161.3 16.8 208 27-357 238-450 (463)
145 KOG1036 Mitotic spindle checkp 99.9 2.8E-20 6E-25 149.3 20.4 235 27-346 49-293 (323)
146 KOG1007 WD repeat protein TSSC 99.9 2.1E-20 4.6E-25 148.6 19.5 251 31-408 62-355 (370)
147 KOG1009 Chromatin assembly com 99.9 2.2E-20 4.7E-25 155.2 19.9 182 32-299 13-196 (434)
148 KOG2096 WD40 repeat protein [G 99.9 2.8E-20 6E-25 149.9 18.6 254 94-402 79-349 (420)
149 KOG2445 Nuclear pore complex c 99.9 1.5E-19 3.2E-24 145.1 22.3 268 12-370 47-334 (361)
150 KOG0646 WD40 repeat protein [G 99.9 2.6E-20 5.7E-25 157.3 18.2 236 7-356 101-350 (476)
151 KOG1274 WD40 repeat protein [G 99.9 1.6E-19 3.5E-24 164.6 24.2 239 114-408 14-256 (933)
152 KOG1517 Guanine nucleotide bin 99.9 1.1E-19 2.5E-24 167.7 23.1 302 34-409 1066-1376(1387)
153 KOG0294 WD40 repeat-containing 99.9 1E-19 2.2E-24 146.5 20.0 225 47-408 4-231 (362)
154 KOG0270 WD40 repeat-containing 99.9 9.6E-20 2.1E-24 153.0 18.6 250 36-406 177-441 (463)
155 KOG2048 WD40 repeat protein [G 99.8 5.9E-19 1.3E-23 155.7 23.6 240 114-408 26-269 (691)
156 KOG1539 WD repeat protein [Gen 99.8 1.1E-19 2.3E-24 164.0 18.9 195 32-356 448-648 (910)
157 KOG1408 WD40 repeat protein [F 99.8 8.9E-19 1.9E-23 155.6 23.2 299 36-409 328-666 (1080)
158 KOG0303 Actin-binding protein 99.8 5E-19 1.1E-23 146.7 20.2 211 28-357 77-295 (472)
159 KOG1188 WD40 repeat protein [G 99.8 3.1E-19 6.8E-24 145.2 18.6 202 45-365 41-250 (376)
160 KOG0321 WD40 repeat-containing 99.8 3.4E-19 7.3E-24 156.2 19.9 254 37-407 54-340 (720)
161 KOG1007 WD repeat protein TSSC 99.8 4.8E-19 1E-23 141.0 17.9 224 31-356 122-361 (370)
162 KOG2919 Guanine nucleotide-bin 99.8 3.4E-19 7.4E-24 144.0 17.1 258 115-408 51-321 (406)
163 KOG0642 Cell-cycle nuclear pro 99.8 1.4E-19 3E-24 156.5 15.7 262 30-408 292-555 (577)
164 KOG0303 Actin-binding protein 99.8 9.2E-19 2E-23 145.1 19.8 173 96-361 76-254 (472)
165 KOG0649 WD40 repeat protein [G 99.8 2.2E-18 4.7E-23 134.0 20.5 233 33-367 11-245 (325)
166 KOG4378 Nuclear protein COP1 [ 99.8 1.2E-18 2.5E-23 148.6 20.4 233 114-408 35-274 (673)
167 KOG1445 Tumor-specific antigen 99.8 2.7E-18 5.8E-23 150.7 22.2 156 219-406 628-786 (1012)
168 KOG2055 WD40 repeat protein [G 99.8 1.4E-18 3E-23 146.8 19.0 250 32-356 257-512 (514)
169 KOG1587 Cytoplasmic dynein int 99.8 8.5E-18 1.8E-22 152.4 24.3 275 10-356 223-516 (555)
170 KOG0307 Vesicle coat complex C 99.8 1.6E-19 3.5E-24 168.5 11.3 203 113-408 64-278 (1049)
171 KOG1523 Actin-related protein 99.8 1.3E-17 2.8E-22 134.8 20.6 222 32-357 10-237 (361)
172 KOG0322 G-protein beta subunit 99.8 2E-18 4.3E-23 135.8 15.1 293 31-408 13-317 (323)
173 KOG1034 Transcriptional repres 99.8 1.3E-17 2.8E-22 135.2 18.2 274 31-408 37-331 (385)
174 KOG0290 Conserved WD40 repeat- 99.8 2.2E-17 4.7E-22 131.8 19.0 256 29-352 93-361 (364)
175 KOG1524 WD40 repeat-containing 99.8 1E-17 2.3E-22 144.2 17.2 176 114-408 105-280 (737)
176 KOG1310 WD40 repeat protein [G 99.8 9.8E-18 2.1E-22 144.8 16.8 246 25-362 43-309 (758)
177 PRK11028 6-phosphogluconolacto 99.8 1.3E-15 2.9E-20 134.8 30.5 252 114-408 35-298 (330)
178 KOG1445 Tumor-specific antigen 99.8 9.8E-18 2.1E-22 147.2 16.1 213 29-357 624-845 (1012)
179 PRK01742 tolB translocation pr 99.8 7.7E-17 1.7E-21 147.0 22.2 217 29-395 200-426 (429)
180 KOG0644 Uncharacterized conser 99.8 1.6E-18 3.5E-23 156.5 10.4 251 27-406 185-460 (1113)
181 KOG4328 WD40 protein [Function 99.8 4.3E-17 9.3E-22 137.8 17.7 249 28-404 230-484 (498)
182 KOG0290 Conserved WD40 repeat- 99.8 9.4E-17 2E-21 128.2 18.7 157 215-407 147-311 (364)
183 KOG1963 WD40 repeat protein [G 99.8 2.2E-16 4.8E-21 143.9 23.4 294 37-408 21-316 (792)
184 KOG4227 WD40 repeat protein [G 99.8 5.5E-17 1.2E-21 134.7 17.7 259 28-405 52-313 (609)
185 KOG1273 WD40 repeat protein [G 99.8 9.8E-17 2.1E-21 129.5 18.6 192 116-408 26-220 (405)
186 KOG1009 Chromatin assembly com 99.8 3.1E-17 6.8E-22 136.6 14.5 211 114-403 14-249 (434)
187 KOG0771 Prolactin regulatory e 99.7 7.1E-17 1.5E-21 135.4 15.6 203 36-299 148-355 (398)
188 PRK01742 tolB translocation pr 99.7 3.7E-16 7.9E-21 142.6 20.8 184 114-408 204-395 (429)
189 KOG2139 WD40 repeat protein [G 99.7 1.1E-15 2.3E-20 125.9 20.4 259 32-406 98-367 (445)
190 KOG2110 Uncharacterized conser 99.7 4.4E-15 9.6E-20 122.6 23.0 152 218-408 87-242 (391)
191 KOG1240 Protein kinase contain 99.7 4.6E-15 9.9E-20 139.9 25.3 290 10-357 1030-1335(1431)
192 KOG2321 WD40 repeat protein [G 99.7 4.3E-15 9.3E-20 129.4 22.5 284 26-408 45-337 (703)
193 COG2319 FOG: WD40 repeat [Gene 99.7 2.4E-14 5.1E-19 131.7 29.3 239 28-407 61-307 (466)
194 KOG1517 Guanine nucleotide bin 99.7 2.4E-15 5.3E-20 139.6 21.7 263 32-357 1109-1382(1387)
195 PRK03629 tolB translocation pr 99.7 9.1E-15 2E-19 133.1 24.6 215 30-394 196-427 (429)
196 KOG1538 Uncharacterized conser 99.7 6E-16 1.3E-20 137.0 16.0 239 28-357 49-294 (1081)
197 KOG2111 Uncharacterized conser 99.7 4.5E-14 9.8E-19 114.5 24.0 140 193-357 112-257 (346)
198 KOG1963 WD40 repeat protein [G 99.7 1.6E-14 3.5E-19 131.9 23.4 268 29-357 202-539 (792)
199 KOG1587 Cytoplasmic dynein int 99.7 3.1E-14 6.8E-19 129.4 25.1 251 114-408 243-510 (555)
200 COG2319 FOG: WD40 repeat [Gene 99.7 3.5E-13 7.5E-18 123.9 32.4 279 28-408 151-436 (466)
201 PRK11028 6-phosphogluconolacto 99.7 2.2E-13 4.8E-18 120.6 29.3 260 29-356 31-304 (330)
202 KOG1188 WD40 repeat protein [G 99.7 4.7E-15 1E-19 121.2 16.7 258 29-408 67-340 (376)
203 PRK02889 tolB translocation pr 99.7 3E-14 6.5E-19 129.9 23.8 210 29-371 192-416 (427)
204 KOG0642 Cell-cycle nuclear pro 99.7 2.9E-15 6.2E-20 130.2 16.0 226 30-369 342-573 (577)
205 PRK04922 tolB translocation pr 99.7 2.7E-14 5.8E-19 130.7 23.3 207 29-370 200-423 (433)
206 KOG0650 WD40 repeat nucleolar 99.7 9.7E-15 2.1E-19 127.8 18.9 199 111-408 519-729 (733)
207 KOG1310 WD40 repeat protein [G 99.7 1.5E-15 3.2E-20 131.6 13.4 182 94-356 43-231 (758)
208 KOG1334 WD40 repeat protein [G 99.6 6.5E-15 1.4E-19 125.8 15.5 307 27-408 137-460 (559)
209 KOG4227 WD40 repeat protein [G 99.6 3.2E-15 7E-20 124.3 13.2 202 114-401 57-261 (609)
210 KOG2110 Uncharacterized conser 99.6 1E-13 2.2E-18 114.7 21.8 157 114-357 88-249 (391)
211 KOG0771 Prolactin regulatory e 99.6 6.9E-15 1.5E-19 123.6 14.6 192 117-408 148-348 (398)
212 KOG1524 WD40 repeat-containing 99.6 5.1E-15 1.1E-19 127.9 14.1 178 31-352 103-282 (737)
213 PRK02889 tolB translocation pr 99.6 1E-13 2.2E-18 126.4 23.5 185 114-406 196-392 (427)
214 PRK03629 tolB translocation pr 99.6 2.9E-13 6.3E-18 123.3 26.1 184 114-407 199-396 (429)
215 PRK05137 tolB translocation pr 99.6 1.8E-13 3.9E-18 125.4 24.6 204 28-366 197-420 (435)
216 PF08662 eIF2A: Eukaryotic tra 99.6 9.3E-14 2E-18 111.6 19.0 117 217-366 58-187 (194)
217 KOG2139 WD40 repeat protein [G 99.6 7.2E-13 1.6E-17 109.5 23.6 226 32-357 140-384 (445)
218 PRK05137 tolB translocation pr 99.6 6.3E-13 1.4E-17 121.9 25.3 182 114-405 202-397 (435)
219 KOG0649 WD40 repeat protein [G 99.6 9.9E-13 2.2E-17 102.9 22.3 222 27-367 57-283 (325)
220 KOG1523 Actin-related protein 99.6 2.8E-13 6E-18 110.1 18.7 179 14-301 45-239 (361)
221 PRK04922 tolB translocation pr 99.6 4.5E-13 9.8E-18 122.7 22.7 182 114-405 204-399 (433)
222 KOG4497 Uncharacterized conser 99.6 1.1E-13 2.5E-18 112.7 16.0 275 32-403 48-380 (447)
223 KOG4497 Uncharacterized conser 99.6 3.5E-14 7.5E-19 115.7 13.0 216 37-408 13-234 (447)
224 KOG1272 WD40-repeat-containing 99.6 2E-14 4.3E-19 122.2 11.1 266 34-404 131-399 (545)
225 KOG2394 WD40 protein DMR-N9 [G 99.6 2.5E-13 5.5E-18 117.6 17.9 143 218-394 219-384 (636)
226 KOG2394 WD40 protein DMR-N9 [G 99.6 1.7E-13 3.6E-18 118.7 16.2 163 114-336 220-383 (636)
227 KOG0644 Uncharacterized conser 99.6 1.7E-14 3.7E-19 131.0 10.3 238 28-356 228-468 (1113)
228 KOG3881 Uncharacterized conser 99.6 1.2E-12 2.5E-17 109.3 20.2 215 33-363 106-326 (412)
229 PF08662 eIF2A: Eukaryotic tra 99.6 1.1E-12 2.3E-17 105.5 19.5 110 114-300 60-181 (194)
230 PF02239 Cytochrom_D1: Cytochr 99.5 7.2E-12 1.6E-16 110.9 24.4 280 36-406 40-337 (369)
231 PRK00178 tolB translocation pr 99.5 6E-12 1.3E-16 115.6 24.8 206 29-369 195-417 (430)
232 KOG2111 Uncharacterized conser 99.5 1.3E-11 2.8E-16 100.5 22.0 239 114-408 6-250 (346)
233 PRK04792 tolB translocation pr 99.5 6.8E-12 1.5E-16 114.9 23.4 206 30-370 215-437 (448)
234 TIGR02800 propeller_TolB tol-p 99.5 1.4E-11 3E-16 113.1 24.8 183 114-406 190-386 (417)
235 TIGR02800 propeller_TolB tol-p 99.5 9.3E-12 2E-16 114.3 23.5 205 29-368 186-407 (417)
236 KOG3881 Uncharacterized conser 99.5 3E-12 6.5E-17 106.9 17.9 247 31-408 54-314 (412)
237 KOG2315 Predicted translation 99.5 7.6E-11 1.7E-15 103.2 26.9 101 266-405 269-375 (566)
238 KOG1240 Protein kinase contain 99.5 5.6E-12 1.2E-16 119.6 21.0 194 91-367 1038-1235(1431)
239 PF10282 Lactonase: Lactonase, 99.5 9.3E-10 2E-14 97.7 33.9 269 32-356 36-322 (345)
240 KOG0322 G-protein beta subunit 99.5 7.9E-13 1.7E-17 104.6 12.3 170 31-297 149-322 (323)
241 PRK00178 tolB translocation pr 99.5 7.1E-11 1.5E-15 108.6 25.7 182 114-405 199-394 (430)
242 COG2706 3-carboxymuconate cycl 99.4 1.4E-09 3.1E-14 90.7 28.9 278 13-406 20-312 (346)
243 PRK01029 tolB translocation pr 99.4 2.3E-10 4.9E-15 104.1 25.8 114 221-361 283-407 (428)
244 PF10282 Lactonase: Lactonase, 99.4 3E-09 6.4E-14 94.5 32.3 249 114-405 37-312 (345)
245 PRK04792 tolB translocation pr 99.4 1.1E-10 2.5E-15 106.9 23.9 182 114-405 218-413 (448)
246 KOG1272 WD40-repeat-containing 99.4 3.1E-12 6.8E-17 109.1 12.1 202 114-367 130-333 (545)
247 KOG1064 RAVE (regulator of V-A 99.4 5.5E-12 1.2E-16 123.7 13.9 199 28-366 2204-2407(2439)
248 COG2706 3-carboxymuconate cycl 99.4 2.1E-09 4.6E-14 89.7 26.5 203 114-403 40-262 (346)
249 PF02239 Cytochrom_D1: Cytochr 99.4 1.4E-09 3.1E-14 96.4 26.4 200 45-365 6-210 (369)
250 KOG0280 Uncharacterized conser 99.4 1.2E-10 2.5E-15 94.0 17.3 120 215-357 162-285 (339)
251 KOG1354 Serine/threonine prote 99.3 8.4E-11 1.8E-15 96.8 16.3 293 31-354 83-432 (433)
252 KOG4532 WD40-like repeat conta 99.3 1.3E-09 2.8E-14 87.0 21.7 158 221-404 161-322 (344)
253 KOG2314 Translation initiation 99.3 1.7E-09 3.7E-14 94.8 24.3 277 33-406 250-559 (698)
254 KOG4547 WD40 repeat-containing 99.3 8.9E-11 1.9E-15 103.4 16.6 195 125-402 3-207 (541)
255 KOG1334 WD40 repeat protein [G 99.3 5.7E-11 1.2E-15 102.1 14.7 265 92-408 133-418 (559)
256 KOG1409 Uncharacterized conser 99.3 3.9E-10 8.4E-15 93.0 18.8 203 31-300 67-272 (404)
257 COG5354 Uncharacterized protei 99.3 1.2E-09 2.5E-14 94.8 22.6 280 32-403 32-378 (561)
258 KOG2041 WD40 repeat protein [G 99.3 7.3E-11 1.6E-15 106.2 15.8 257 31-406 13-280 (1189)
259 KOG4547 WD40 repeat-containing 99.3 5E-10 1.1E-14 98.8 19.5 115 215-357 99-221 (541)
260 PRK01029 tolB translocation pr 99.3 2E-09 4.4E-14 97.9 23.4 141 222-403 234-389 (428)
261 TIGR02658 TTQ_MADH_Hv methylam 99.3 2.7E-08 5.8E-13 86.4 28.5 252 40-365 53-338 (352)
262 KOG2315 Predicted translation 99.3 1E-09 2.2E-14 96.3 18.8 133 195-365 252-397 (566)
263 KOG2321 WD40 repeat protein [G 99.3 3.7E-10 8E-15 99.2 16.1 162 114-353 176-340 (703)
264 KOG3914 WD repeat protein WDR4 99.2 2.3E-10 5E-15 96.3 13.8 80 215-303 148-228 (390)
265 KOG0974 WD-repeat protein WDR6 99.2 6.9E-10 1.5E-14 104.1 17.2 198 35-357 90-289 (967)
266 KOG0974 WD-repeat protein WDR6 99.2 2.1E-10 4.5E-15 107.5 13.7 149 38-299 139-289 (967)
267 KOG0280 Uncharacterized conser 99.2 1.5E-09 3.3E-14 87.7 16.7 125 221-366 124-251 (339)
268 PF04762 IKI3: IKI3 family; I 99.2 8.4E-08 1.8E-12 94.6 30.1 309 31-408 74-450 (928)
269 PRK04043 tolB translocation pr 99.2 2.4E-08 5.3E-13 90.3 24.5 198 33-367 188-409 (419)
270 COG4946 Uncharacterized protei 99.2 1.4E-08 3E-13 87.7 21.1 145 215-403 356-507 (668)
271 PF04762 IKI3: IKI3 family; I 99.1 1.9E-07 4.2E-12 92.2 30.4 295 32-357 120-457 (928)
272 KOG0882 Cyclophilin-related pe 99.1 5.1E-09 1.1E-13 89.6 16.5 285 30-369 7-317 (558)
273 PRK04043 tolB translocation pr 99.0 9.4E-08 2E-12 86.6 22.3 141 218-406 232-389 (419)
274 COG4946 Uncharacterized protei 99.0 1.1E-07 2.4E-12 82.3 20.5 139 114-343 360-504 (668)
275 COG5354 Uncharacterized protei 99.0 1.3E-07 2.8E-12 82.5 20.9 294 33-406 72-421 (561)
276 KOG2314 Translation initiation 99.0 2.1E-07 4.6E-12 82.0 21.8 267 35-405 213-513 (698)
277 PLN02919 haloacid dehalogenase 99.0 4.8E-07 1E-11 91.1 27.5 178 221-408 685-882 (1057)
278 PLN02919 haloacid dehalogenase 99.0 4.8E-07 1E-11 91.1 26.9 239 34-357 625-889 (1057)
279 TIGR02658 TTQ_MADH_Hv methylam 99.0 6E-06 1.3E-10 72.0 30.1 244 124-407 54-323 (352)
280 PF15492 Nbas_N: Neuroblastoma 99.0 1.1E-06 2.4E-11 71.6 23.3 237 37-371 2-273 (282)
281 PF07433 DUF1513: Protein of u 98.9 1.3E-06 2.9E-11 73.3 23.4 238 33-405 5-277 (305)
282 KOG4190 Uncharacterized conser 98.9 2.7E-09 5.8E-14 93.7 7.7 185 94-365 728-914 (1034)
283 PF08450 SGL: SMP-30/Gluconola 98.9 7.2E-06 1.6E-10 69.4 28.2 227 37-402 4-243 (246)
284 KOG0309 Conserved WD40 repeat- 98.9 1.2E-08 2.6E-13 92.6 11.3 266 31-373 23-303 (1081)
285 KOG1409 Uncharacterized conser 98.9 4.3E-08 9.3E-13 81.2 13.4 222 93-408 16-264 (404)
286 KOG4190 Uncharacterized conser 98.9 6.2E-09 1.3E-13 91.5 8.7 178 28-302 731-910 (1034)
287 PF00400 WD40: WD domain, G-be 98.9 7.3E-09 1.6E-13 59.5 5.4 39 14-60 1-39 (39)
288 KOG2041 WD40 repeat protein [G 98.9 4.2E-07 9.1E-12 82.7 18.8 244 30-356 69-337 (1189)
289 KOG4714 Nucleoporin [Nuclear s 98.8 7.8E-08 1.7E-12 76.7 12.2 73 220-299 181-255 (319)
290 KOG4532 WD40-like repeat conta 98.8 6.6E-07 1.4E-11 71.9 17.3 168 116-356 161-331 (344)
291 KOG1832 HIV-1 Vpr-binding prot 98.8 6.9E-09 1.5E-13 96.1 6.7 199 31-367 1100-1301(1516)
292 KOG3914 WD repeat protein WDR4 98.8 1.4E-07 3.1E-12 79.8 13.6 116 223-366 112-232 (390)
293 KOG1064 RAVE (regulator of V-A 98.8 3.3E-08 7.1E-13 98.2 10.1 163 114-367 2209-2376(2439)
294 PF15492 Nbas_N: Neuroblastoma 98.8 5E-06 1.1E-10 67.9 20.7 36 266-302 228-263 (282)
295 PF00400 WD40: WD domain, G-be 98.7 7.2E-08 1.6E-12 55.2 6.7 38 92-143 2-39 (39)
296 KOG2114 Vacuolar assembly/sort 98.7 8.9E-06 1.9E-10 75.9 22.8 132 217-370 124-257 (933)
297 PF07433 DUF1513: Protein of u 98.7 7.8E-06 1.7E-10 68.8 20.6 115 216-354 160-283 (305)
298 KOG2695 WD40 repeat protein [G 98.7 6.8E-08 1.5E-12 80.1 8.2 133 217-371 251-390 (425)
299 KOG2066 Vacuolar assembly/sort 98.7 1.1E-06 2.3E-11 81.2 16.5 194 27-356 34-233 (846)
300 KOG0309 Conserved WD40 repeat- 98.6 2.5E-07 5.4E-12 84.4 10.2 219 25-357 107-340 (1081)
301 KOG1912 WD40 repeat protein [G 98.6 8.7E-06 1.9E-10 75.1 19.8 251 32-408 15-298 (1062)
302 COG5170 CDC55 Serine/threonine 98.6 1.1E-06 2.4E-11 72.1 12.3 245 32-354 85-365 (460)
303 KOG1912 WD40 repeat protein [G 98.5 1.3E-05 2.7E-10 74.1 18.7 85 31-154 54-152 (1062)
304 KOG2695 WD40 repeat protein [G 98.5 4.7E-07 1E-11 75.3 7.4 148 31-276 251-401 (425)
305 KOG1920 IkappaB kinase complex 98.5 0.00014 3E-09 70.9 24.6 241 33-357 69-323 (1265)
306 KOG4714 Nucleoporin [Nuclear s 98.5 8.7E-07 1.9E-11 70.9 8.3 76 32-146 179-255 (319)
307 PF11768 DUF3312: Protein of u 98.5 1.7E-05 3.6E-10 71.5 16.8 110 215-341 256-371 (545)
308 TIGR03300 assembly_YfgL outer 98.5 9.9E-05 2.2E-09 66.8 22.5 131 230-408 241-373 (377)
309 KOG1645 RING-finger-containing 98.4 2.1E-05 4.5E-10 67.2 16.2 79 29-148 190-269 (463)
310 KOG1832 HIV-1 Vpr-binding prot 98.4 4.7E-07 1E-11 84.4 6.9 161 114-367 1102-1265(1516)
311 TIGR03300 assembly_YfgL outer 98.4 0.00016 3.5E-09 65.5 23.4 228 43-365 64-305 (377)
312 PF08450 SGL: SMP-30/Gluconola 98.4 0.00035 7.6E-09 59.1 22.4 114 221-359 42-167 (246)
313 KOG1008 Uncharacterized conser 98.3 4.3E-07 9.4E-12 81.6 3.9 210 32-357 56-276 (783)
314 PF13360 PQQ_2: PQQ-like domai 98.3 0.0014 3E-08 55.1 24.1 196 125-362 34-235 (238)
315 KOG0882 Cyclophilin-related pe 98.2 6.5E-05 1.4E-09 65.2 14.7 230 110-366 6-240 (558)
316 KOG1645 RING-finger-containing 98.1 8.8E-05 1.9E-09 63.5 13.6 36 114-151 194-230 (463)
317 PF06977 SdiA-regulated: SdiA- 98.1 0.0018 4E-08 53.9 21.0 219 33-353 22-247 (248)
318 KOG3621 WD40 repeat-containing 98.1 8.7E-05 1.9E-09 68.1 13.8 167 31-300 32-199 (726)
319 KOG1008 Uncharacterized conser 98.1 9.8E-07 2.1E-11 79.4 1.4 156 215-406 99-266 (783)
320 PF14783 BBS2_Mid: Ciliary BBS 98.1 0.00034 7.3E-09 49.3 13.6 65 35-144 2-70 (111)
321 KOG1275 PAB-dependent poly(A) 98.1 0.0001 2.3E-09 69.6 14.4 117 215-355 214-341 (1118)
322 KOG1275 PAB-dependent poly(A) 98.1 6.9E-05 1.5E-09 70.7 12.9 150 35-297 180-341 (1118)
323 KOG1920 IkappaB kinase complex 98.1 0.00049 1.1E-08 67.3 18.9 192 32-247 109-322 (1265)
324 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0052 1.1E-07 55.9 24.9 40 328-368 217-257 (410)
325 PF11768 DUF3312: Protein of u 98.1 1.4E-05 3.1E-10 71.9 8.2 80 26-148 253-332 (545)
326 KOG2066 Vacuolar assembly/sort 98.1 0.00021 4.5E-09 66.7 15.3 113 227-367 80-197 (846)
327 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0095 2.1E-07 53.3 26.1 248 114-402 43-345 (353)
328 COG0823 TolB Periplasmic compo 98.0 0.0001 2.3E-09 66.6 12.2 144 217-404 191-345 (425)
329 PF08596 Lgl_C: Lethal giant l 98.0 0.0078 1.7E-07 54.1 23.9 103 34-152 3-122 (395)
330 COG0823 TolB Periplasmic compo 98.0 0.00079 1.7E-08 61.1 17.5 113 223-363 286-407 (425)
331 KOG2114 Vacuolar assembly/sort 98.0 0.0013 2.7E-08 62.2 18.5 135 221-371 68-216 (933)
332 PF14583 Pectate_lyase22: Olig 97.9 0.012 2.7E-07 51.6 23.4 156 217-403 186-369 (386)
333 PF06977 SdiA-regulated: SdiA- 97.9 0.0094 2E-07 49.7 22.5 165 219-402 65-239 (248)
334 PF14655 RAB3GAP2_N: Rab3 GTPa 97.9 0.0084 1.8E-07 53.8 21.9 48 323-371 303-351 (415)
335 PRK11138 outer membrane biogen 97.8 0.014 3.1E-07 53.2 23.5 107 230-368 256-364 (394)
336 PF08553 VID27: VID27 cytoplas 97.8 0.00087 1.9E-08 64.5 15.5 104 231-356 543-647 (794)
337 PRK02888 nitrous-oxide reducta 97.8 0.0021 4.5E-08 59.9 17.1 103 193-299 295-405 (635)
338 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.0069 1.5E-07 54.2 19.5 33 32-65 42-74 (353)
339 PF04053 Coatomer_WDAD: Coatom 97.7 0.0025 5.5E-08 58.1 16.6 137 216-406 30-166 (443)
340 PRK02888 nitrous-oxide reducta 97.7 0.0087 1.9E-07 55.9 19.5 65 328-408 321-398 (635)
341 PF03178 CPSF_A: CPSF A subuni 97.7 0.014 3E-07 51.6 20.5 116 216-356 86-202 (321)
342 PF04053 Coatomer_WDAD: Coatom 97.7 0.014 3E-07 53.4 20.5 58 230-299 117-174 (443)
343 KOG3621 WD40 repeat-containing 97.7 0.00042 9.1E-09 63.8 10.2 122 217-357 32-155 (726)
344 COG3490 Uncharacterized protei 97.6 0.0049 1.1E-07 50.9 14.2 86 217-302 224-314 (366)
345 KOG3617 WD40 and TPR repeat-co 97.5 0.0016 3.5E-08 61.4 12.1 72 33-145 60-131 (1416)
346 smart00320 WD40 WD40 repeats. 97.5 0.00025 5.4E-09 39.6 4.5 30 31-60 11-40 (40)
347 smart00320 WD40 WD40 repeats. 97.5 0.00045 9.7E-09 38.5 5.3 37 93-143 4-40 (40)
348 KOG4640 Anaphase-promoting com 97.4 0.00092 2E-08 60.9 9.3 74 219-302 21-96 (665)
349 PRK11138 outer membrane biogen 97.4 0.052 1.1E-06 49.5 20.8 30 126-155 119-148 (394)
350 KOG4640 Anaphase-promoting com 97.4 0.0013 2.9E-08 59.9 9.3 80 32-153 20-100 (665)
351 PF08553 VID27: VID27 cytoplas 97.3 0.059 1.3E-06 52.5 20.3 71 217-298 576-647 (794)
352 COG3386 Gluconolactonase [Carb 97.3 0.094 2E-06 45.5 23.2 129 221-371 113-256 (307)
353 PF12894 Apc4_WD40: Anaphase-p 97.3 0.0013 2.8E-08 38.7 5.7 33 31-63 10-42 (47)
354 PF13360 PQQ_2: PQQ-like domai 97.2 0.097 2.1E-06 43.8 21.8 141 136-302 2-144 (238)
355 COG3391 Uncharacterized conser 97.2 0.15 3.3E-06 46.1 21.1 143 220-402 117-270 (381)
356 PF03178 CPSF_A: CPSF A subuni 97.2 0.11 2.3E-06 46.0 19.4 72 220-299 131-203 (321)
357 PF08596 Lgl_C: Lethal giant l 97.2 0.17 3.8E-06 45.7 22.1 83 31-145 85-173 (395)
358 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.044 9.6E-07 38.8 13.6 64 218-293 42-109 (111)
359 KOG3617 WD40 and TPR repeat-co 97.0 0.0023 5E-08 60.5 7.2 114 170-298 15-131 (1416)
360 KOG2395 Protein involved in va 96.8 0.039 8.4E-07 49.8 13.1 101 234-356 398-500 (644)
361 PF04841 Vps16_N: Vps16, N-ter 96.8 0.41 8.9E-06 43.8 20.7 29 219-247 81-109 (410)
362 PF15390 DUF4613: Domain of un 96.7 0.26 5.6E-06 45.5 17.3 70 223-299 117-187 (671)
363 COG3204 Uncharacterized protei 96.7 0.32 6.9E-06 41.0 20.4 208 114-399 86-298 (316)
364 PRK13616 lipoprotein LpqB; Pro 96.7 0.46 9.9E-06 45.5 19.9 75 218-297 447-524 (591)
365 COG3391 Uncharacterized conser 96.6 0.5 1.1E-05 42.8 24.0 206 36-367 77-293 (381)
366 KOG1916 Nuclear protein, conta 96.6 0.0018 3.9E-08 61.6 3.2 122 227-362 192-328 (1283)
367 PF12894 Apc4_WD40: Anaphase-p 96.6 0.012 2.5E-07 34.6 5.5 30 114-145 12-41 (47)
368 COG3490 Uncharacterized protei 96.5 0.39 8.5E-06 40.2 15.8 160 221-405 70-246 (366)
369 KOG2079 Vacuolar assembly/sort 96.5 0.015 3.3E-07 56.8 8.7 98 281-407 100-198 (1206)
370 PF10647 Gmad1: Lipoprotein Lp 96.4 0.28 6.2E-06 41.5 15.4 154 220-405 25-186 (253)
371 PRK13616 lipoprotein LpqB; Pro 96.3 0.66 1.4E-05 44.5 18.4 126 221-361 399-530 (591)
372 PF05694 SBP56: 56kDa selenium 96.1 0.95 2.1E-05 40.7 22.9 119 237-363 220-349 (461)
373 KOG2079 Vacuolar assembly/sort 96.0 0.044 9.4E-07 53.8 9.0 104 229-356 98-203 (1206)
374 PF12234 Rav1p_C: RAVE protein 95.9 0.34 7.3E-06 46.1 14.2 117 221-357 32-157 (631)
375 PF00780 CNH: CNH domain; Int 95.9 1 2.2E-05 38.8 18.6 125 220-362 37-170 (275)
376 PF00780 CNH: CNH domain; Int 95.9 1 2.2E-05 38.7 26.0 221 114-369 36-267 (275)
377 KOG4499 Ca2+-binding protein R 95.8 0.33 7.1E-06 39.4 11.8 47 223-277 216-263 (310)
378 PF10647 Gmad1: Lipoprotein Lp 95.8 1 2.2E-05 38.2 16.6 70 220-290 113-187 (253)
379 PF12234 Rav1p_C: RAVE protein 95.6 0.39 8.4E-06 45.7 13.6 89 10-144 15-103 (631)
380 PF02897 Peptidase_S9_N: Proly 95.6 1.5 3.4E-05 40.3 17.7 114 221-357 126-261 (414)
381 TIGR03606 non_repeat_PQQ dehyd 95.5 2 4.3E-05 39.6 17.7 59 219-278 30-89 (454)
382 TIGR02604 Piru_Ver_Nterm putat 95.4 1.4 3.1E-05 39.7 16.1 110 219-344 14-140 (367)
383 PF14870 PSII_BNR: Photosynthe 95.4 1.7 3.6E-05 37.7 19.3 117 217-353 185-301 (302)
384 KOG2444 WD40 repeat protein [G 95.2 0.1 2.2E-06 42.0 7.2 61 229-298 113-177 (238)
385 PF10168 Nup88: Nuclear pore c 95.2 0.94 2E-05 44.4 15.1 95 268-366 85-189 (717)
386 KOG2444 WD40 repeat protein [G 95.2 0.089 1.9E-06 42.3 6.8 64 230-301 70-135 (238)
387 PF06433 Me-amine-dh_H: Methyl 95.2 2 4.3E-05 37.5 24.5 61 291-370 270-333 (342)
388 KOG4649 PQQ (pyrrolo-quinoline 95.1 0.51 1.1E-05 38.9 10.8 100 274-408 17-117 (354)
389 PF10313 DUF2415: Uncharacteri 95.1 0.13 2.8E-06 29.3 5.3 29 329-357 2-34 (43)
390 PF07569 Hira: TUP1-like enhan 94.9 0.21 4.5E-06 41.1 8.6 79 275-357 18-96 (219)
391 PF10313 DUF2415: Uncharacteri 94.9 0.13 2.8E-06 29.3 5.0 32 268-299 1-34 (43)
392 KOG3630 Nuclear pore complex, 94.8 0.67 1.5E-05 46.4 12.6 153 219-401 101-260 (1405)
393 KOG2395 Protein involved in va 94.7 0.9 2E-05 41.5 12.2 68 220-298 432-500 (644)
394 PF15390 DUF4613: Domain of un 94.7 0.8 1.7E-05 42.5 12.0 146 219-402 20-173 (671)
395 KOG3630 Nuclear pore complex, 94.5 0.37 8.1E-06 48.0 10.2 61 218-284 198-259 (1405)
396 PF02897 Peptidase_S9_N: Proly 94.5 3.9 8.4E-05 37.6 25.8 242 34-357 125-405 (414)
397 TIGR02604 Piru_Ver_Nterm putat 94.4 3.6 7.9E-05 37.1 16.4 18 33-50 14-31 (367)
398 COG3204 Uncharacterized protei 94.2 3 6.5E-05 35.4 20.0 176 32-300 85-265 (316)
399 KOG2377 Uncharacterized conser 94.2 4.1 8.8E-05 36.8 16.2 35 31-65 65-99 (657)
400 cd00216 PQQ_DH Dehydrogenases 94.2 5.2 0.00011 37.8 26.4 28 128-155 111-138 (488)
401 PF14583 Pectate_lyase22: Olig 94.0 4.3 9.3E-05 36.2 23.0 116 221-355 240-380 (386)
402 PHA02713 hypothetical protein; 93.9 4.6 9.9E-05 38.8 16.3 27 125-151 350-381 (557)
403 KOG1897 Damage-specific DNA bi 93.8 7.8 0.00017 38.7 24.5 32 33-64 584-615 (1096)
404 KOG4499 Ca2+-binding protein R 93.5 3.5 7.7E-05 33.7 18.2 94 270-372 160-256 (310)
405 KOG2377 Uncharacterized conser 93.5 2.5 5.4E-05 38.1 12.5 143 222-400 26-169 (657)
406 PF10168 Nup88: Nuclear pore c 92.8 11 0.00023 37.3 23.7 85 217-301 83-182 (717)
407 PF14655 RAB3GAP2_N: Rab3 GTPa 92.8 2.5 5.5E-05 38.4 11.9 79 215-301 304-401 (415)
408 KOG4441 Proteins containing BT 92.7 9.9 0.00021 36.6 18.8 33 116-151 325-363 (571)
409 COG3386 Gluconolactonase [Carb 92.4 7 0.00015 34.1 20.2 83 216-302 160-246 (307)
410 PF07995 GSDH: Glucose / Sorbo 92.4 2.8 6.1E-05 37.2 11.7 56 220-278 3-59 (331)
411 PF06433 Me-amine-dh_H: Methyl 92.2 7.5 0.00016 34.1 24.2 241 119-401 41-306 (342)
412 COG5167 VID27 Protein involved 92.0 5.1 0.00011 36.8 12.5 103 232-356 529-632 (776)
413 KOG2247 WD40 repeat-containing 91.9 0.034 7.3E-07 49.8 -0.8 143 220-406 36-180 (615)
414 PF07995 GSDH: Glucose / Sorbo 91.4 9.9 0.00021 33.8 24.3 26 34-60 3-28 (331)
415 PHA02713 hypothetical protein; 91.4 5.1 0.00011 38.5 13.0 23 278-301 512-536 (557)
416 PF14761 HPS3_N: Hermansky-Pud 91.1 7.2 0.00016 31.6 12.6 118 231-357 29-164 (215)
417 KOG1916 Nuclear protein, conta 90.6 0.36 7.9E-06 46.9 4.4 81 34-145 182-265 (1283)
418 TIGR02276 beta_rpt_yvtn 40-res 90.4 1.8 4E-05 24.3 5.9 34 337-371 1-36 (42)
419 KOG4649 PQQ (pyrrolo-quinoline 90.4 9.5 0.00021 31.9 20.8 64 44-150 23-86 (354)
420 PF05694 SBP56: 56kDa selenium 90.2 13 0.00029 33.8 13.2 35 218-252 311-347 (461)
421 TIGR03606 non_repeat_PQQ dehyd 90.1 16 0.00034 33.9 17.5 33 32-64 29-61 (454)
422 PRK13684 Ycf48-like protein; P 90.1 13 0.00029 33.0 17.3 119 216-355 212-330 (334)
423 PF08728 CRT10: CRT10; InterP 89.9 21 0.00045 35.0 16.2 120 221-355 103-245 (717)
424 PF07569 Hira: TUP1-like enhan 89.8 2 4.3E-05 35.4 7.6 72 226-300 18-97 (219)
425 KOG4460 Nuclear pore complex, 89.8 7.3 0.00016 36.0 11.4 86 269-357 105-199 (741)
426 PF14870 PSII_BNR: Photosynthe 89.6 13 0.00029 32.3 28.2 152 216-403 142-294 (302)
427 PF11635 Med16: Mediator compl 88.7 28 0.00061 35.0 19.3 80 328-408 260-344 (753)
428 PF13449 Phytase-like: Esteras 88.7 17 0.00036 32.3 17.8 170 219-400 20-230 (326)
429 PLN00033 photosystem II stabil 88.4 20 0.00042 32.8 16.4 148 221-403 241-389 (398)
430 PF12657 TFIIIC_delta: Transcr 88.0 4 8.7E-05 32.2 8.0 31 269-299 87-122 (173)
431 PLN00033 photosystem II stabil 87.8 22 0.00047 32.5 17.9 113 217-353 279-396 (398)
432 KOG1897 Damage-specific DNA bi 87.8 33 0.00072 34.6 22.2 102 232-356 841-942 (1096)
433 PF08728 CRT10: CRT10; InterP 87.5 31 0.00066 33.9 18.5 76 217-297 162-245 (717)
434 KOG2280 Vacuolar assembly/sort 87.4 20 0.00042 34.9 12.9 75 195-279 65-139 (829)
435 PF05096 Glu_cyclase_2: Glutam 87.1 17 0.00038 30.7 19.3 200 114-346 45-250 (264)
436 cd00216 PQQ_DH Dehydrogenases 87.1 28 0.0006 33.0 25.2 29 338-367 405-434 (488)
437 TIGR03075 PQQ_enz_alc_DH PQQ-d 87.0 29 0.00063 33.2 27.1 31 338-369 471-502 (527)
438 PF13449 Phytase-like: Esteras 86.6 22 0.00048 31.5 17.1 64 221-287 87-165 (326)
439 PF07676 PD40: WD40-like Beta 86.3 3.1 6.7E-05 23.0 4.8 29 31-59 7-38 (39)
440 KOG2247 WD40 repeat-containing 85.9 0.17 3.7E-06 45.5 -0.8 98 220-343 76-175 (615)
441 KOG2280 Vacuolar assembly/sort 85.5 38 0.00083 33.1 17.6 38 328-366 217-255 (829)
442 PHA03098 kelch-like protein; P 85.4 36 0.00077 32.7 17.7 23 278-301 437-467 (534)
443 KOG1983 Tomosyn and related SN 85.2 39 0.00085 35.1 15.0 33 32-64 35-67 (993)
444 KOG1900 Nuclear pore complex, 84.8 21 0.00046 37.1 12.5 80 217-299 177-273 (1311)
445 KOG4441 Proteins containing BT 83.1 47 0.001 32.2 15.5 68 224-301 328-407 (571)
446 COG5167 VID27 Protein involved 81.6 16 0.00036 33.7 9.4 49 339-403 573-622 (776)
447 PF07676 PD40: WD40-like Beta 81.1 5.7 0.00012 21.9 4.5 29 266-295 7-38 (39)
448 COG4257 Vgb Streptogramin lyas 81.0 34 0.00073 29.1 13.2 144 219-402 62-206 (353)
449 PF11715 Nup160: Nucleoporin N 80.8 11 0.00023 36.4 8.9 74 228-302 156-252 (547)
450 PF14781 BBS2_N: Ciliary BBSom 80.2 22 0.00047 26.5 13.8 80 37-149 3-85 (136)
451 TIGR03118 PEPCTERM_chp_1 conse 80.0 39 0.00084 29.3 24.5 28 35-62 25-52 (336)
452 PRK10115 protease 2; Provision 79.9 68 0.0015 32.0 27.2 33 33-65 127-164 (686)
453 PF12657 TFIIIC_delta: Transcr 79.4 29 0.00062 27.4 9.7 33 114-146 86-122 (173)
454 PF03022 MRJP: Major royal jel 79.1 42 0.00091 29.1 18.6 134 218-357 60-216 (287)
455 PF14761 HPS3_N: Hermansky-Pud 79.0 34 0.00073 27.9 18.8 76 218-297 134-213 (215)
456 PF07250 Glyoxal_oxid_N: Glyox 78.9 36 0.00077 28.6 10.1 119 269-407 68-192 (243)
457 PF03088 Str_synth: Strictosid 78.3 19 0.00041 24.7 7.8 41 288-346 35-75 (89)
458 COG3823 Glutamine cyclotransfe 77.6 37 0.0008 27.6 12.2 36 118-156 50-87 (262)
459 PF10214 Rrn6: RNA polymerase 77.2 87 0.0019 31.7 21.3 132 114-300 146-278 (765)
460 PRK10115 protease 2; Provision 76.9 83 0.0018 31.4 18.3 111 220-356 128-255 (686)
461 PF11715 Nup160: Nucleoporin N 76.7 17 0.00038 34.9 9.0 30 126-155 229-258 (547)
462 KOG3616 Selective LIM binding 76.5 28 0.00061 34.0 9.7 34 114-149 15-48 (1636)
463 COG4590 ABC-type uncharacteriz 74.5 27 0.00058 31.9 8.6 59 281-357 329-387 (733)
464 KOG4460 Nuclear pore complex, 74.0 37 0.0008 31.7 9.4 99 32-150 103-203 (741)
465 COG4590 ABC-type uncharacteriz 74.0 73 0.0016 29.3 11.6 80 215-299 217-300 (733)
466 PHA03098 kelch-like protein; P 74.0 86 0.0019 30.1 14.0 23 278-301 487-514 (534)
467 PF14727 PHTB1_N: PTHB1 N-term 73.8 74 0.0016 29.3 15.0 155 124-356 34-204 (418)
468 PF12341 DUF3639: Protein of u 72.3 11 0.00024 19.1 3.9 26 33-60 2-27 (27)
469 PF10214 Rrn6: RNA polymerase 70.9 1.2E+02 0.0027 30.7 16.3 138 216-357 77-233 (765)
470 PRK13684 Ycf48-like protein; P 70.2 80 0.0017 28.1 28.8 149 218-403 172-321 (334)
471 COG5276 Uncharacterized conser 70.2 71 0.0015 27.6 19.4 110 221-356 131-241 (370)
472 smart00564 PQQ beta-propeller 68.2 15 0.00033 19.1 3.9 24 129-152 8-31 (33)
473 PF02333 Phytase: Phytase; In 68.0 95 0.0021 28.1 19.4 103 193-299 180-291 (381)
474 TIGR02171 Fb_sc_TIGR02171 Fibr 67.7 50 0.0011 33.4 9.5 47 327-373 349-402 (912)
475 PF05096 Glu_cyclase_2: Glutam 66.5 82 0.0018 26.8 22.4 193 33-286 45-249 (264)
476 PF01731 Arylesterase: Arylest 64.5 32 0.0007 23.4 5.6 28 329-356 55-84 (86)
477 KOG1900 Nuclear pore complex, 62.2 2.2E+02 0.0048 30.3 13.3 158 192-359 97-275 (1311)
478 TIGR03075 PQQ_enz_alc_DH PQQ-d 62.1 1.5E+02 0.0033 28.4 22.1 27 128-154 121-147 (527)
479 PF03088 Str_synth: Strictosid 61.2 31 0.00067 23.7 5.1 38 348-402 37-74 (89)
480 PF07250 Glyoxal_oxid_N: Glyox 59.5 37 0.00079 28.5 6.3 61 330-405 69-138 (243)
481 PF01436 NHL: NHL repeat; Int 59.4 22 0.00048 17.9 4.6 25 270-295 4-28 (28)
482 KOG3522 Predicted guanine nucl 59.0 1.5E+02 0.0033 29.7 10.8 133 193-356 556-697 (925)
483 KOG1520 Predicted alkaloid syn 57.8 1.4E+02 0.0031 26.8 11.8 38 348-402 199-236 (376)
484 KOG1983 Tomosyn and related SN 57.6 2.5E+02 0.0055 29.5 15.4 33 114-148 36-68 (993)
485 COG5290 IkappaB kinase complex 57.5 2.1E+02 0.0046 28.7 12.6 70 271-356 250-324 (1243)
486 PHA02790 Kelch-like protein; P 57.0 1.8E+02 0.0038 27.6 14.3 62 229-301 407-473 (480)
487 PF14781 BBS2_N: Ciliary BBSom 56.6 82 0.0018 23.6 13.2 64 229-301 63-128 (136)
488 PF01731 Arylesterase: Arylest 55.6 32 0.00069 23.4 4.4 31 33-63 54-85 (86)
489 PF01011 PQQ: PQQ enzyme repea 54.1 35 0.00077 18.6 3.9 28 129-156 2-29 (38)
490 KOG3616 Selective LIM binding 54.1 48 0.0011 32.5 6.7 36 265-301 12-47 (1636)
491 COG5290 IkappaB kinase complex 53.3 2.5E+02 0.0055 28.2 12.7 31 32-62 112-142 (1243)
492 TIGR02608 delta_60_rpt delta-6 52.7 52 0.0011 20.1 4.8 19 34-52 2-20 (55)
493 PF12768 Rax2: Cortical protei 51.6 59 0.0013 28.0 6.5 54 239-301 16-75 (281)
494 PF02333 Phytase: Phytase; In 51.5 1.9E+02 0.0041 26.3 20.4 105 239-357 127-238 (381)
495 TIGR03118 PEPCTERM_chp_1 conse 49.4 1.8E+02 0.0039 25.4 13.0 124 221-356 25-170 (336)
496 PF05935 Arylsulfotrans: Aryls 48.7 2.4E+02 0.0052 26.7 13.8 134 224-372 153-316 (477)
497 PF13570 PQQ_3: PQQ-like domai 45.2 38 0.00082 18.7 3.1 21 126-146 20-40 (40)
498 KOG4659 Uncharacterized conser 43.2 4.6E+02 0.01 28.4 21.2 74 331-405 596-682 (1899)
499 PF14269 Arylsulfotran_2: Aryl 42.5 2.4E+02 0.0051 24.7 12.3 136 35-234 146-294 (299)
500 PF10584 Proteasome_A_N: Prote 39.8 8.3 0.00018 18.7 -0.2 9 390-398 6-14 (23)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-46 Score=304.87 Aligned_cols=281 Identities=19% Similarity=0.274 Sum_probs=243.0
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (409)
Q Consensus 29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (409)
.+|..-|.|++|+|||+.||+|+.||+|++||..+++. ....|.+|.
T Consensus 154 KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~--------------------------~g~~l~gH~------- 200 (480)
T KOG0271|consen 154 KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ--------------------------IGRALRGHK------- 200 (480)
T ss_pred cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc--------------------------ccccccCcc-------
Confidence 45999999999999999999999999999999998875 467899999
Q ss_pred cceeccceEEEEEEe---cCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290 109 SLEIEEKINRVRWCA---APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (409)
Q Consensus 109 ~~~~~~~v~~l~~~~---s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (409)
..|++++|.| .|.+.+|++++.||.|+|||+..+.+......+ ...+.|...+...++
T Consensus 201 -----K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH--------------T~~VTCvrwGG~gli 261 (480)
T KOG0271|consen 201 -----KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH--------------TASVTCVRWGGEGLI 261 (480)
T ss_pred -----cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC--------------ccceEEEEEcCCceE
Confidence 9999999987 677889999999999999999998887765433 334566666667788
Q ss_pred ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeC-----------CCC------------------------
Q 015290 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-----------SDC------------------------ 230 (409)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-----------~~~------------------------ 230 (409)
++++. |++|++|+... +.+.+.+ .+|...|+.++.+ |.+
T Consensus 262 ySgS~--DrtIkvw~a~d---G~~~r~l-kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~ 335 (480)
T KOG0271|consen 262 YSGSQ--DRTIKVWRALD---GKLCREL-KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS 335 (480)
T ss_pred EecCC--CceEEEEEccc---hhHHHhh-cccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence 88887 99999999866 5666666 8999999999887 223
Q ss_pred -CeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccc
Q 015290 231 -ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR 308 (409)
Q Consensus 231 -~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 308 (409)
+.|++| +|.++.+|+.....+++.. +.+|..-|+.+.|+||+ +++|++|.|..|++||.++|+. +.
T Consensus 336 ~erlVSgsDd~tlflW~p~~~kkpi~r-------mtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~tGk~----la 403 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSKKPITR-------MTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRTGKF----LA 403 (480)
T ss_pred cceeEEecCCceEEEecccccccchhh-------hhchhhheeeEEECCCc-cEEEEeecccceeeeeCCCcch----hh
Confidence 359999 9999999998866666655 79999999999999999 9999999999999999999874 23
Q ss_pred cccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccce
Q 015290 309 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 387 (409)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 387 (409)
. |.+|-++|..++|+.|.++|++|+ |.++++||+++ .+....+.+|.+.+
T Consensus 404 s-------------fRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t-kKl~~DLpGh~DEV--------------- 454 (480)
T KOG0271|consen 404 S-------------FRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT-KKLKQDLPGHADEV--------------- 454 (480)
T ss_pred h-------------hhhccceeEEEEeccCccEEEEcCCCceEEEEEeee-eeecccCCCCCceE---------------
Confidence 3 556789999999999999999998 59999999997 88899999999987
Q ss_pred eeEEEcCCCCeEEEcccCCCC
Q 015290 388 FECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 388 ~~~~~spdg~~l~s~s~dg~i 408 (409)
+++.|+|||+.+++|+.|..+
T Consensus 455 f~vDwspDG~rV~sggkdkv~ 475 (480)
T KOG0271|consen 455 FAVDWSPDGQRVASGGKDKVL 475 (480)
T ss_pred EEEEecCCCceeecCCCceEE
Confidence 699999999999999999753
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-45 Score=299.43 Aligned_cols=286 Identities=17% Similarity=0.202 Sum_probs=233.6
Q ss_pred cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (409)
.-+|.++|.|+.|+|+|+.||+|+.|.++++||+.+.. +..++++|.
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT---------------------------p~~t~KgH~------ 157 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET---------------------------PLFTCKGHK------ 157 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC---------------------------cceeecCCc------
Confidence 34599999999999999999999999999999999876 467889999
Q ss_pred ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (409)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
..|.||+| +|||+.|++|+.||+|++||..+++..-..--.+..-|.++.+.+.. ..+....+++
T Consensus 158 ------~WVlcvaw--sPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~h-------l~p~~r~las 222 (480)
T KOG0271|consen 158 ------NWVLCVAW--SPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLH-------LVPPCRRLAS 222 (480)
T ss_pred ------cEEEEEEE--CCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccc-------cCCCccceec
Confidence 89999999 89999999999999999999998865443322233333333333221 1233345555
Q ss_pred ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (409)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (409)
++. ||.++|||+.. +.++..+ .+|..+|+|+.|--+| ++++| .|++|++|+.. .+.+.+. +.+|
T Consensus 223 ~sk--Dg~vrIWd~~~---~~~~~~l-sgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~-dG~~~r~-------lkGH 287 (480)
T KOG0271|consen 223 SSK--DGSVRIWDTKL---GTCVRTL-SGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRAL-DGKLCRE-------LKGH 287 (480)
T ss_pred ccC--CCCEEEEEccC---ceEEEEe-ccCccceEEEEEcCCc-eEEecCCCceEEEEEcc-chhHHHh-------hccc
Confidence 544 99999999976 5677776 8999999999997655 88899 99999999998 6777766 7999
Q ss_pred cCceEEEEEe-----------CCC------------------------CCEEEEEeCCCeEEEEeCCCcccccccccccc
Q 015290 267 TEVITSAEFH-----------PIY------------------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILR 311 (409)
Q Consensus 267 ~~~v~~~~~~-----------p~~------------------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 311 (409)
..+|+.++.+ |.+ +..|++|+.|.++.+|+....+.+ +..
T Consensus 288 ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp---i~r-- 362 (480)
T KOG0271|consen 288 AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP---ITR-- 362 (480)
T ss_pred chheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccc---hhh--
Confidence 9999999876 323 135999999999999987653311 122
Q ss_pred ccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeE
Q 015290 312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFEC 390 (409)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 390 (409)
+.+|..-|+.+.||||++|+|+++ |+.|++||-++ |+.+.+|.+|-.++ +.+
T Consensus 363 -----------mtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t-Gk~lasfRGHv~~V---------------Yqv 415 (480)
T KOG0271|consen 363 -----------MTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT-GKFLASFRGHVAAV---------------YQV 415 (480)
T ss_pred -----------hhchhhheeeEEECCCccEEEEeecccceeeeeCCC-cchhhhhhhcccee---------------EEE
Confidence 456788999999999999999998 69999999997 99999999999987 599
Q ss_pred EEcCCCCeEEEcccCCCC
Q 015290 391 SVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 391 ~~spdg~~l~s~s~dg~i 408 (409)
+||.|.++|++||.|.++
T Consensus 416 awsaDsRLlVS~SkDsTL 433 (480)
T KOG0271|consen 416 AWSADSRLLVSGSKDSTL 433 (480)
T ss_pred EeccCccEEEEcCCCceE
Confidence 999999999999999875
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-44 Score=298.08 Aligned_cols=281 Identities=19% Similarity=0.258 Sum_probs=243.4
Q ss_pred cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (409)
.++.+.+|..+.|+.|++.||||+.+|.++||+..+.. .+..|.||.
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~---------------------------~~~~l~gH~------ 217 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN---------------------------LLQTLRGHT------ 217 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc---------------------------eeEEEeccc------
Confidence 34467899999999999999999999999999998775 478899999
Q ss_pred ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (409)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
..|.++.|+|-.++..+++|+.||++++|++.+......+..+. ..+..+.++|++.++.+
T Consensus 218 ------~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~-------------~RVs~VafHPsG~~L~T 278 (459)
T KOG0272|consen 218 ------SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHL-------------ARVSRVAFHPSGKFLGT 278 (459)
T ss_pred ------cceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcch-------------hhheeeeecCCCceeee
Confidence 89999999763247799999999999999999876554444332 34667788999999999
Q ss_pred ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (409)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (409)
+.+ |.+-++||+++..+. ....+|...|.+++|+|||..+++| .|..-+|||++ ++.++-. +.+|
T Consensus 279 asf--D~tWRlWD~~tk~El----L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlR-tgr~im~-------L~gH 344 (459)
T KOG0272|consen 279 ASF--DSTWRLWDLETKSEL----LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLR-TGRCIMF-------LAGH 344 (459)
T ss_pred ccc--ccchhhcccccchhh----HhhcccccccceeEecCCCceeeccCccchhheeecc-cCcEEEE-------eccc
Confidence 999 999999999874432 1237999999999999999999999 99999999999 7777766 6899
Q ss_pred cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEecc-CCCEEEEe
Q 015290 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSR 345 (409)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~sg 345 (409)
...|.+++|+|+| ..|||||.|++++|||++..+. ..+ +.+|..-|+.+.|+| .|.+|+|+
T Consensus 345 ~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~----ly~-------------ipAH~nlVS~Vk~~p~~g~fL~Ta 406 (459)
T KOG0272|consen 345 IKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRSE----LYT-------------IPAHSNLVSQVKYSPQEGYFLVTA 406 (459)
T ss_pred ccceeeEeECCCc-eEEeecCCCCcEEEeeeccccc----cee-------------cccccchhhheEecccCCeEEEEc
Confidence 9999999999999 9999999999999999998653 222 345678999999999 67899999
Q ss_pred e-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 346 ~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
+ |++++||.-++ ..+++.+.||++.+ .+++++||+++++|++.|+++
T Consensus 407 syD~t~kiWs~~~-~~~~ksLaGHe~kV---------------~s~Dis~d~~~i~t~s~DRT~ 454 (459)
T KOG0272|consen 407 SYDNTVKIWSTRT-WSPLKSLAGHEGKV---------------ISLDISPDSQAIATSSFDRTI 454 (459)
T ss_pred ccCcceeeecCCC-cccchhhcCCccce---------------EEEEeccCCceEEEeccCcee
Confidence 8 59999999985 89999999999986 699999999999999999986
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.7e-39 Score=254.64 Aligned_cols=282 Identities=19% Similarity=0.330 Sum_probs=227.0
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (409)
Q Consensus 29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (409)
.+|.++|.++.|++|.++|++++.||.+.|||.-+..+ ...+.-..
T Consensus 52 kGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK---------------------------~haipl~s------- 97 (343)
T KOG0286|consen 52 KGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK---------------------------VHAIPLPS------- 97 (343)
T ss_pred cccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc---------------------------eeEEecCc-------
Confidence 34999999999999999999999999999999887653 22333333
Q ss_pred cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceee---eeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK---KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (409)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (409)
..|...+| +|.|+++++|+.|+...||++.+.+.. .... .......++++....+...+
T Consensus 98 -----~WVMtCA~--sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r-----------~l~gHtgylScC~f~dD~~i 159 (343)
T KOG0286|consen 98 -----SWVMTCAY--SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSR-----------ELAGHTGYLSCCRFLDDNHI 159 (343)
T ss_pred -----eeEEEEEE--CCCCCeEEecCcCceeEEEecccccccccceeee-----------eecCccceeEEEEEcCCCce
Confidence 68999999 899999999999999999999854211 1110 01112222222222223334
Q ss_pred ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCC-CCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (409)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (409)
.+++. |.+.-+||+++ ++.++.| .+|.+.|.+++++| +++.+++| .|+..+|||++ .+.+.+. +
T Consensus 160 lT~SG--D~TCalWDie~---g~~~~~f-~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R-~~~c~qt-------F 225 (343)
T KOG0286|consen 160 LTGSG--DMTCALWDIET---GQQTQVF-HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR-SGQCVQT-------F 225 (343)
T ss_pred EecCC--CceEEEEEccc---ceEEEEe-cCCcccEEEEecCCCCCCeEEecccccceeeeecc-CcceeEe-------e
Confidence 44433 88999999987 6777777 89999999999999 89999999 99999999999 7788877 7
Q ss_pred cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (409)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 343 (409)
.+|...|++++|.|+| .-|++|+.|++.++||+|.... +..+.. .....+|++++||-.|++|.
T Consensus 226 ~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~~----~a~ys~-----------~~~~~gitSv~FS~SGRlLf 289 (343)
T KOG0286|consen 226 EGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQE----LAVYSH-----------DSIICGITSVAFSKSGRLLF 289 (343)
T ss_pred cccccccceEEEccCC-CeeeecCCCceeEEEeecCCcE----Eeeecc-----------CcccCCceeEEEcccccEEE
Confidence 9999999999999999 9999999999999999998754 244433 11135899999999999999
Q ss_pred Eee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 344 SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 344 sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
+|. |..+.+||.-+ ++.+..+.+|++.+ .++..+|||.-++|||+|.++
T Consensus 290 agy~d~~c~vWDtlk-~e~vg~L~GHeNRv---------------Scl~~s~DG~av~TgSWDs~l 339 (343)
T KOG0286|consen 290 AGYDDFTCNVWDTLK-GERVGVLAGHENRV---------------SCLGVSPDGMAVATGSWDSTL 339 (343)
T ss_pred eeecCCceeEeeccc-cceEEEeeccCCee---------------EEEEECCCCcEEEecchhHhe
Confidence 985 59999999875 88899999999987 699999999999999999875
No 5
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-41 Score=272.02 Aligned_cols=347 Identities=57% Similarity=0.902 Sum_probs=295.1
Q ss_pred hccccceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccC
Q 015290 8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTS 87 (409)
Q Consensus 8 ~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (409)
++..+.|++.|.++.. ++..+.|.+|.|.-+|.+||+|..+|+|.++.-.....
T Consensus 6 ~~~~~~w~f~~~~~~~-----vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~--------------------- 59 (433)
T KOG1354|consen 6 KNEILMWKFSQVFGLE-----VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK--------------------- 59 (433)
T ss_pred cchhhhhhhhhhhcce-----echhcceeeEEeecccceEeecCCCCeEEEeecccccc---------------------
Confidence 4456679999988763 55678999999999999999999999999998654432
Q ss_pred CCceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCccccccccc
Q 015290 88 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL 167 (409)
Q Consensus 88 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 167 (409)
.+|+....++.|+++|+++++++++..|..+.|++..+...++....|++|++|.+........ ..+...
T Consensus 60 -~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~-~~~~~~-------- 129 (433)
T KOG1354|consen 60 -GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKE-GYNLPE-------- 129 (433)
T ss_pred -cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccc-cccccc--------
Confidence 2788899999999999999999999999999998655667889999999999999986654431 111100
Q ss_pred ccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEcc
Q 015290 168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLE 247 (409)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~ 247 (409)
.+ +.+....-..+.+-.++......|.+.+-.+|...|+++.++.|++.+++++|-.|.+|+++
T Consensus 130 --~~--------------~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnle 193 (433)
T KOG1354|consen 130 --EG--------------PPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLE 193 (433)
T ss_pred --cC--------------CCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeecccc
Confidence 00 00000000122233334444567888888899999999999999999999999999999999
Q ss_pred CCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccc
Q 015290 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (409)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (409)
...+...++++++..+.....-|++..|+|..+++|+..+..|+|++-|+|...+|....+.++. ++.|..++.|.+..
T Consensus 194 i~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe-pedp~~rsffseiI 272 (433)
T KOG1354|consen 194 IIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE-PEDPSSRSFFSEII 272 (433)
T ss_pred ccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc-ccCCcchhhHHHHh
Confidence 99999999999999998888999999999999899999999999999999999999999899998 89999999999999
Q ss_pred cceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290 328 ASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD 407 (409)
Q Consensus 328 ~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~ 407 (409)
..|..+.|+++|+||++-+.-+|++||+.+..+++.+++.|.....+++++|+++|+|+-+.++|+-++.+++|||..+.
T Consensus 273 sSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~ 352 (433)
T KOG1354|consen 273 SSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNV 352 (433)
T ss_pred hhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccce
Confidence 99999999999999999988999999998888999999999999999999999999999999999999999999998754
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-37 Score=243.13 Aligned_cols=292 Identities=15% Similarity=0.162 Sum_probs=229.8
Q ss_pred cccCCCcEEEEEECCC-CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290 28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~~-~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (409)
..+|.+.|+.++..+. .+.+++++.|.++.+|++...... -..+++.+.||+
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~----------------------~G~~~r~~~GHs----- 63 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK----------------------YGVPVRRLTGHS----- 63 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc----------------------cCceeeeeeccc-----
Confidence 3459999999999985 578899999999999999865431 224577899999
Q ss_pred cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (409)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (409)
..|..+.. ++||++.++++.|+++++||+.+++..+.+..+.. .++....++++..+.
T Consensus 64 -------H~v~dv~~--s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~-------------dVlsva~s~dn~qiv 121 (315)
T KOG0279|consen 64 -------HFVSDVVL--SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK-------------DVLSVAFSTDNRQIV 121 (315)
T ss_pred -------eEecceEE--ccCCceEEeccccceEEEEEecCCcEEEEEEecCC-------------ceEEEEecCCCceee
Confidence 88999999 89999999999999999999999877666554332 345555666667777
Q ss_pred cccccccceeEEEecCCcccceeeeeeccc-cccceeEEEeCCC--CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCc
Q 015290 187 HLEWTENMATKIANVGNSVHARCQKVYPHA-HDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (409)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~--~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~ 262 (409)
+|+. |.++++|++-. .|..+.... +...|+|+.|+|+ ..+++++ .|+++++||++ +-+....
T Consensus 122 SGSr--DkTiklwnt~g----~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~-~~~l~~~------- 187 (315)
T KOG0279|consen 122 SGSR--DKTIKLWNTLG----VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR-NCQLRTT------- 187 (315)
T ss_pred cCCC--cceeeeeeecc----cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC-Ccchhhc-------
Confidence 7776 99999999875 455444222 3788999999998 6788888 99999999999 5555544
Q ss_pred CcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEE
Q 015290 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (409)
Q Consensus 263 ~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 342 (409)
+.+|.+.++.++++||| .+.++|+.||.+.+||++.++.+ ..+.. ...|.+++|+|+.-+|
T Consensus 188 ~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~l----ysl~a--------------~~~v~sl~fspnrywL 248 (315)
T KOG0279|consen 188 FIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKNL----YSLEA--------------FDIVNSLCFSPNRYWL 248 (315)
T ss_pred cccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCcee----EeccC--------------CCeEeeEEecCCceeE
Confidence 78999999999999999 99999999999999999998742 33333 5689999999998888
Q ss_pred EEeecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 343 LSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 343 ~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
+.+.+..|+|||+.+ +.++..++...... ........| .+++|++||+.|++|-.|+.|
T Consensus 249 ~~at~~sIkIwdl~~-~~~v~~l~~d~~g~--s~~~~~~~c----lslaws~dG~tLf~g~td~~i 307 (315)
T KOG0279|consen 249 CAATATSIKIWDLES-KAVVEELKLDGIGP--SSKAGDPIC----LSLAWSADGQTLFAGYTDNVI 307 (315)
T ss_pred eeccCCceEEEeccc-hhhhhhcccccccc--ccccCCcEE----EEEEEcCCCcEEEeeecCCcE
Confidence 888888899999986 77776665332211 000011112 589999999999999999865
No 7
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.2e-38 Score=262.41 Aligned_cols=275 Identities=17% Similarity=0.294 Sum_probs=228.5
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
....|++++|+.+|.+||+|+.||.++||+..+.. +.+|..|.
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l----------------------------~~tl~~Hk--------- 276 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL----------------------------ISTLGQHK--------- 276 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCcEEEEEecCchh----------------------------hhhhhccC---------
Confidence 35689999999999999999999999999987664 45778888
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
++|.+|.| +..|.+|++++.|+++.+||..++.....+.++..+ .+.+.|.....+..+.
T Consensus 277 ---gPI~slKW--nk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~-------------~lDVdW~~~~~F~ts~-- 336 (524)
T KOG0273|consen 277 ---GPIFSLKW--NKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP-------------ALDVDWQSNDEFATSS-- 336 (524)
T ss_pred ---CceEEEEE--cCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC-------------ccceEEecCceEeecC--
Confidence 99999999 799999999999999999999999888776654332 2333333333333332
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (409)
.++.|+++.+.. ..++.++ .+|.++|.+|.|+|.+..|+++ +|++++||... ....... +..|...
T Consensus 337 -td~~i~V~kv~~---~~P~~t~-~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~-~~~~~~~-------l~~Hske 403 (524)
T KOG0273|consen 337 -TDGCIHVCKVGE---DRPVKTF-IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMG-QSNSVHD-------LQAHSKE 403 (524)
T ss_pred -CCceEEEEEecC---CCcceee-ecccCceEEEEECCCCceEEEecCCCeeEeeecC-CCcchhh-------hhhhccc
Confidence 388899998866 4566776 7899999999999999999999 99999999987 5555544 7889999
Q ss_pred eEEEEEeCCCC--------CEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCE
Q 015290 270 ITSAEFHPIYC--------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (409)
Q Consensus 270 v~~~~~~p~~~--------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 341 (409)
|+.+.|+|.|+ ..+++++.|++|++||+..+.. +.. |..|..+|.+++|+|+|+|
T Consensus 404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~----i~~-------------f~kH~~pVysvafS~~g~y 466 (524)
T KOG0273|consen 404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP----IHT-------------LMKHQEPVYSVAFSPNGRY 466 (524)
T ss_pred eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce----eEe-------------eccCCCceEEEEecCCCcE
Confidence 99999999873 3899999999999999988764 233 3445789999999999999
Q ss_pred EEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCCC
Q 015290 342 LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDNG 409 (409)
Q Consensus 342 l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i~ 409 (409)
+|+|+ ||.|.+|+.++ ++.++.+.+.... +.++|+.+|..|..+-.||.++
T Consensus 467 lAsGs~dg~V~iws~~~-~~l~~s~~~~~~I----------------fel~Wn~~G~kl~~~~sd~~vc 518 (524)
T KOG0273|consen 467 LASGSLDGCVHIWSTKT-GKLVKSYQGTGGI----------------FELCWNAAGDKLGACASDGSVC 518 (524)
T ss_pred EEecCCCCeeEeccccc-hheeEeecCCCeE----------------EEEEEcCCCCEEEEEecCCCce
Confidence 99998 69999999987 8999888876653 5999999999999999998764
No 8
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-37 Score=247.15 Aligned_cols=286 Identities=14% Similarity=0.210 Sum_probs=231.9
Q ss_pred cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (409)
..+|++.|+.+.|+|+|.+||+|+.|..|.+|++....+ -...+++|.
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--------------------------N~~~lkgHs------ 90 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE--------------------------NFWVLKGHS------ 90 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc--------------------------ceeeecccc------
Confidence 345899999999999999999999999999999876553 356788999
Q ss_pred ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccC--CCCCcee
Q 015290 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN--PPSFAHG 185 (409)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 185 (409)
++|..+.| .+|+..+++++.|++++.||.++++..+..+.+. .++.... .....++
T Consensus 91 ------gAVM~l~~--~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~--------------~~vNs~~p~rrg~~lv 148 (338)
T KOG0265|consen 91 ------GAVMELHG--MRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHT--------------SFVNSLDPSRRGPQLV 148 (338)
T ss_pred ------ceeEeeee--ccCCCEEEEecCCceEEEEecccceeeehhcccc--------------ceeeecCccccCCeEE
Confidence 99999999 7999999999999999999999998877655332 1222111 1112333
Q ss_pred ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (409)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~ 264 (409)
.+++ .|+++++||+... .+++++ ..+.+++++.|..++..+.+| -|+.|++||++ ......+ +.
T Consensus 149 ~Sgs--dD~t~kl~D~R~k---~~~~t~--~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r-~~d~~~~-------ls 213 (338)
T KOG0265|consen 149 CSGS--DDGTLKLWDIRKK---EAIKTF--ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLR-KNDGLYT-------LS 213 (338)
T ss_pred EecC--CCceEEEEeeccc---chhhcc--ccceeEEEEEecccccceeeccccCceeeeccc-cCcceEE-------ee
Confidence 4444 3899999999863 344443 456778999999999999999 99999999999 6666666 79
Q ss_pred CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE
Q 015290 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (409)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s 344 (409)
+|.+.|+.+..+|+| .++.+-+.|.++++||++........++++..|... .......++|+|++.++.+
T Consensus 214 Gh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hn---------feknlL~cswsp~~~~i~a 283 (338)
T KOG0265|consen 214 GHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHN---------FEKNLLKCSWSPNGTKITA 283 (338)
T ss_pred cccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEEEeecchhh---------hhhhcceeeccCCCCcccc
Confidence 999999999999999 999999999999999998765444445566553211 1235677899999999999
Q ss_pred ee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 345 RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 345 g~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
|+ |..+++||... ...+..++||...+ .+++|+|...+|.+++.|++|
T Consensus 284 gs~dr~vyvwd~~~-r~~lyklpGh~gsv---------------n~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 284 GSADRFVYVWDTTS-RRILYKLPGHYGSV---------------NEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred ccccceEEEeeccc-ccEEEEcCCcceeE---------------EEeeecCCCcEEEEeccCcee
Confidence 97 59999999874 78999999999987 599999999999999999876
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-38 Score=263.94 Aligned_cols=255 Identities=16% Similarity=0.247 Sum_probs=215.7
Q ss_pred cceeeehhccCCCCCccccCCCcEEEEEECCC--CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCC
Q 015290 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKT--GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP 89 (409)
Q Consensus 12 ~~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (409)
..|+..++ .......+|.+.|.++.|+|. +.-||+|+.||++++|++++..
T Consensus 200 kvW~~~~~---~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~------------------------ 252 (459)
T KOG0272|consen 200 KVWSVPQC---NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET------------------------ 252 (459)
T ss_pred eEeecCCc---ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc------------------------
Confidence 34665554 123445569999999999995 6789999999999999998765
Q ss_pred ceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCccccccccccc
Q 015290 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (409)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (409)
++..+.+|. ..|..++| .|+|++|+|++.|.+-++||+.++......+.+.
T Consensus 253 ---~l~~l~gH~------------~RVs~Vaf--HPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs------------ 303 (459)
T KOG0272|consen 253 ---PLQDLEGHL------------ARVSRVAF--HPSGKFLGTASFDSTWRLWDLETKSELLLQEGHS------------ 303 (459)
T ss_pred ---chhhhhcch------------hhheeeee--cCCCceeeecccccchhhcccccchhhHhhcccc------------
Confidence 467889999 89999999 5899999999999999999999887655444332
Q ss_pred ccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccC
Q 015290 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (409)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~ 248 (409)
..++.+.+++++..+++|+. |..-++||+.+ +.++..+ .+|..+|.+|+|+|+|-.|++| .|++++|||++
T Consensus 304 -~~v~~iaf~~DGSL~~tGGl--D~~~RvWDlRt---gr~im~L-~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR- 375 (459)
T KOG0272|consen 304 -KGVFSIAFQPDGSLAATGGL--DSLGRVWDLRT---GRCIMFL-AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLR- 375 (459)
T ss_pred -cccceeEecCCCceeeccCc--cchhheeeccc---CcEEEEe-cccccceeeEeECCCceEEeecCCCCcEEEeeec-
Confidence 34677788888999999888 88999999987 6777766 8999999999999999999999 99999999999
Q ss_pred CCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (409)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (409)
....+.+ +++|.+-|+.+.|+|...++|++++.|++++||..++... ++.+ .||.+
T Consensus 376 ~r~~ly~-------ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~----~ksL-------------aGHe~ 431 (459)
T KOG0272|consen 376 MRSELYT-------IPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP----LKSL-------------AGHEG 431 (459)
T ss_pred cccccee-------cccccchhhheEecccCCeEEEEcccCcceeeecCCCccc----chhh-------------cCCcc
Confidence 5555655 7999999999999995449999999999999999888654 2444 45688
Q ss_pred ceeeeEeccCCCEEEEee-cCeEEEEE
Q 015290 329 SISDIKFANDGQHLLSRD-YMNLKLWD 354 (409)
Q Consensus 329 ~i~~~~~s~~g~~l~sg~-~~~v~iwd 354 (409)
.|.++++++|++++++++ |.++++|.
T Consensus 432 kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 432 KVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999999998 69999995
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.9e-37 Score=249.09 Aligned_cols=281 Identities=16% Similarity=0.249 Sum_probs=234.9
Q ss_pred cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (409)
..+|..+|+.+.|+|+...+++++.|++|++||..+++ +...++||+
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~---------------------------~e~~LrGHt------ 150 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGE---------------------------LERSLRGHT------ 150 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchh---------------------------hhhhhhccc------
Confidence 44589999999999999999999999999999999887 357789999
Q ss_pred ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (409)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
+.|.+|+| +..|+++++++.|=.+++||..+..............+.++.+.+....++++.
T Consensus 151 ------~sv~di~~--~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~s---------- 212 (406)
T KOG0295|consen 151 ------DSVFDISF--DASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCS---------- 212 (406)
T ss_pred ------cceeEEEE--ecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecc----------
Confidence 88999999 689999999999999999999864222222233344455555555543333333
Q ss_pred ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (409)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (409)
. |.+|+.|++.+ +.|+.+| .+|...|..++.+.||..++++ .|.++++|-+. ++++... +..|
T Consensus 213 --r--D~tik~We~~t---g~cv~t~-~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~-t~~~k~~-------lR~h 276 (406)
T KOG0295|consen 213 --R--DNTIKAWECDT---GYCVKTF-PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVA-TKQCKAE-------LREH 276 (406)
T ss_pred --c--ccceeEEeccc---ceeEEec-cCchHhEEEEEecCCeeEEEecCCCceEEEEEec-cchhhhh-------hhcc
Confidence 2 88999999987 7888888 8999999999999999999999 99999999999 6766655 6889
Q ss_pred cCceEEEEEeCCC--------------CCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceee
Q 015290 267 TEVITSAEFHPIY--------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (409)
Q Consensus 267 ~~~v~~~~~~p~~--------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 332 (409)
..+|.+++|.|.. .+++.+++.|++|++||+.++.. ++.. .+|..+|..
T Consensus 277 Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c------L~tL-----------~ghdnwVr~ 339 (406)
T KOG0295|consen 277 EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC------LFTL-----------VGHDNWVRG 339 (406)
T ss_pred ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE------EEEE-----------ecccceeee
Confidence 9999999997631 25999999999999999999852 3332 567899999
Q ss_pred eEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 333 IKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 333 ~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
++|+|.|+||+++.| +++++||++. +++..++..|+..+ ++++|+.+..+++||+-|.++
T Consensus 340 ~af~p~Gkyi~ScaDDktlrvwdl~~-~~cmk~~~ah~hfv---------------t~lDfh~~~p~VvTGsVdqt~ 400 (406)
T KOG0295|consen 340 VAFSPGGKYILSCADDKTLRVWDLKN-LQCMKTLEAHEHFV---------------TSLDFHKTAPYVVTGSVDQTV 400 (406)
T ss_pred eEEcCCCeEEEEEecCCcEEEEEecc-ceeeeccCCCccee---------------EEEecCCCCceEEecccccee
Confidence 999999999999976 9999999986 99999999999886 699999999999999998765
No 11
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-35 Score=252.17 Aligned_cols=298 Identities=19% Similarity=0.305 Sum_probs=222.2
Q ss_pred cceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCce
Q 015290 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY 91 (409)
Q Consensus 12 ~~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (409)
++|||+..+++ |...|.|+.|+|||+++|+++.||.|.+||-.+++.
T Consensus 178 PPFKFk~s~r~--------HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~------------------------- 224 (603)
T KOG0318|consen 178 PPFKFKSSFRE--------HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK------------------------- 224 (603)
T ss_pred CCeeeeecccc--------cccceeeEEECCCCCeEEEecCCccEEEEcCCCccE-------------------------
Confidence 35677777666 899999999999999999999999999999998874
Q ss_pred eeeeeec---CCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccc
Q 015290 92 RYKTEFQ---SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 168 (409)
Q Consensus 92 ~~~~~~~---~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (409)
+..+. +|. +.|.+|+| +||++.|++++.|++++|||+.+.++.+.......
T Consensus 225 --vg~l~~~~aHk------------GsIfalsW--sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~---------- 278 (603)
T KOG0318|consen 225 --VGELEDSDAHK------------GSIFALSW--SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST---------- 278 (603)
T ss_pred --EEEecCCCCcc------------ccEEEEEE--CCCCceEEEecCCceEEEEEeeccceEEEeecCCc----------
Confidence 45555 777 99999999 89999999999999999999999988776553322
Q ss_pred cccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEcc
Q 015290 169 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE 247 (409)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~ 247 (409)
.+...+.+.+.. ..+.+.+. +|.+.+++..... +++.+ .+|...|++++.+|++++|++| .||.|.-|+..
T Consensus 279 v~dqqvG~lWqk--d~lItVSl--~G~in~ln~~d~~---~~~~i-~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 279 VEDQQVGCLWQK--DHLITVSL--SGTINYLNPSDPS---VLKVI-SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSG 350 (603)
T ss_pred hhceEEEEEEeC--CeEEEEEc--CcEEEEecccCCC---hhhee-cccccceeEEEEcCCCCEEEeeccCceEEEEecC
Confidence 223334444431 22222222 6788888876633 55555 8999999999999999999999 99999999986
Q ss_pred CCCcee-------------------------------eeeecCCCcCcC-------------------------------
Q 015290 248 ISDQCF-------------------------------NIVDMKPSNMDD------------------------------- 265 (409)
Q Consensus 248 ~~~~~~-------------------------------~~~~~~~~~~~~------------------------------- 265 (409)
. +..- +.++++...+..
T Consensus 351 ~-g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv 429 (603)
T KOG0318|consen 351 S-GTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIV 429 (603)
T ss_pred C-ccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEE
Confidence 3 2111 111110000000
Q ss_pred ------------ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeee
Q 015290 266 ------------LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 333 (409)
Q Consensus 266 ------------~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 333 (409)
-.....+++++|++ ..++.|+.|+.|++|.+....++.. .....|.++|+.+
T Consensus 430 ~l~~~~~~~~~~~~y~~s~vAv~~~~-~~vaVGG~Dgkvhvysl~g~~l~ee---------------~~~~~h~a~iT~v 493 (603)
T KOG0318|consen 430 LLQDQTKVSSIPIGYESSAVAVSPDG-SEVAVGGQDGKVHVYSLSGDELKEE---------------AKLLEHRAAITDV 493 (603)
T ss_pred EEecCCcceeeccccccceEEEcCCC-CEEEEecccceEEEEEecCCcccce---------------eeeecccCCceEE
Confidence 01123577889998 9999999999999999887654211 0123457899999
Q ss_pred EeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 334 KFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 334 ~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
++|||+.|||+|+. +.+.+||+.+.......+..|...+ .+++|+|+..++||||-|-+|
T Consensus 494 aySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI---------------~~~aWsP~n~~vATGSlDt~V 554 (603)
T KOG0318|consen 494 AYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKI---------------NCVAWSPNNKLVATGSLDTNV 554 (603)
T ss_pred EECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeE---------------EEEEeCCCceEEEeccccceE
Confidence 99999999999986 9999999986333334455576655 699999999999999999765
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.9e-37 Score=273.75 Aligned_cols=260 Identities=21% Similarity=0.299 Sum_probs=212.9
Q ss_pred CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccc-hhhhhhhcccccc--cC-CCceeeeeeecCCCcccccc
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHI-SRSELEKQMDFTS--TS-HPEYRYKTEFQSHEPEFDYL 107 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~-~~~~~~~~~~~~h~~~~~~~ 107 (409)
...++|..|++|+++||.|-.|..|++|.+...+...+.+. -+..+...+..+. -. ..+-....++.||+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~------ 451 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS------ 451 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC------
Confidence 46799999999999999999999999999986442211111 1112211111110 00 11122344588999
Q ss_pred ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (409)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
++|....| +|+.++|++|+.|+++|+|.+.+.....
T Consensus 452 ------GPVyg~sF--sPd~rfLlScSED~svRLWsl~t~s~~V------------------------------------ 487 (707)
T KOG0263|consen 452 ------GPVYGCSF--SPDRRFLLSCSEDSSVRLWSLDTWSCLV------------------------------------ 487 (707)
T ss_pred ------Cceeeeee--cccccceeeccCCcceeeeecccceeEE------------------------------------
Confidence 99999999 7999999999999999999998864433
Q ss_pred ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (409)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (409)
.+ .+|..+|..+.|+|.|-++|++ .|++.++|... ...++++ +.+|
T Consensus 488 ------------------------~y-~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d-~~~PlRi-------fagh 534 (707)
T KOG0263|consen 488 ------------------------IY-KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD-HNKPLRI-------FAGH 534 (707)
T ss_pred ------------------------Ee-cCCCcceeeEEecCCceEEEecCCCceeeeeecc-cCCchhh-------hccc
Confidence 23 7899999999999999999999 99999999998 6667766 7899
Q ss_pred cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (409)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~ 346 (409)
-+.|.|+.|+|+. .|+++||.|.++++||..+|.. +++ |.||.++|.+++|||+|++|++|+
T Consensus 535 lsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~----VRi-------------F~GH~~~V~al~~Sp~Gr~LaSg~ 596 (707)
T KOG0263|consen 535 LSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNS----VRI-------------FTGHKGPVTALAFSPCGRYLASGD 596 (707)
T ss_pred ccccceEEECCcc-cccccCCCCceEEEEEcCCCcE----EEE-------------ecCCCCceEEEEEcCCCceEeecc
Confidence 9999999999999 9999999999999999998864 233 556789999999999999999998
Q ss_pred c-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 347 ~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
+ +.|.+||+.. ++.+..+.+|.+.+ .++.||.||..||+|+.|++|
T Consensus 597 ed~~I~iWDl~~-~~~v~~l~~Ht~ti---------------~SlsFS~dg~vLasgg~DnsV 643 (707)
T KOG0263|consen 597 EDGLIKIWDLAN-GSLVKQLKGHTGTI---------------YSLSFSRDGNVLASGGADNSV 643 (707)
T ss_pred cCCcEEEEEcCC-CcchhhhhcccCce---------------eEEEEecCCCEEEecCCCCeE
Confidence 6 9999999986 89999999997776 699999999999999999986
No 13
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.5e-36 Score=243.01 Aligned_cols=292 Identities=15% Similarity=0.239 Sum_probs=237.2
Q ss_pred ceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCcee
Q 015290 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR 92 (409)
Q Consensus 13 ~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (409)
.||+.++++. |.+-|.|+++.|-.++|++|+.|++|+|||+.+++
T Consensus 140 pwKl~rVi~g--------HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~--------------------------- 184 (460)
T KOG0285|consen 140 PWKLYRVISG--------HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ--------------------------- 184 (460)
T ss_pred cceehhhhhh--------ccceEEEEeeCCCceeEEecCCCceeEEEEcccCe---------------------------
Confidence 4888888776 99999999999999999999999999999999988
Q ss_pred eeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccC
Q 015290 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (409)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (409)
+..++.||. ..|..+++ |+-..|+++++.|+.|+.||+..++.++.+..+.+.
T Consensus 185 LkltltGhi------------~~vr~vav--S~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~------------- 237 (460)
T KOG0285|consen 185 LKLTLTGHI------------ETVRGVAV--SKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSG------------- 237 (460)
T ss_pred EEEeecchh------------heeeeeee--cccCceEEEecCCCeeEEEechhhhhHHHhccccce-------------
Confidence 467889999 89999999 788889999999999999999988877765544332
Q ss_pred ceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCc
Q 015290 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ 251 (409)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~ 251 (409)
+.....+|....+.+++. |.++|+||+.+ ...+..+ .+|..+|..+.+.|....+++| .|++|++||++ .++
T Consensus 238 V~~L~lhPTldvl~t~gr--Dst~RvWDiRt---r~~V~~l-~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~-agk 310 (460)
T KOG0285|consen 238 VYCLDLHPTLDVLVTGGR--DSTIRVWDIRT---RASVHVL-SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLR-AGK 310 (460)
T ss_pred eEEEeccccceeEEecCC--cceEEEeeecc---cceEEEe-cCCCCcceeEEeecCCCceEEecCCceEEEeeec-cCc
Confidence 444555666677777766 99999999987 3445555 8999999999999988899999 99999999999 666
Q ss_pred eeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccccee
Q 015290 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (409)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 331 (409)
...+ +..|...+.+++.+|.. ..||+++.|. |+-|++..+..+ .. +.+|.+-|+
T Consensus 311 t~~t-------lt~hkksvral~lhP~e-~~fASas~dn-ik~w~~p~g~f~----~n-------------lsgh~~iin 364 (460)
T KOG0285|consen 311 TMIT-------LTHHKKSVRALCLHPKE-NLFASASPDN-IKQWKLPEGEFL----QN-------------LSGHNAIIN 364 (460)
T ss_pred eeEe-------eecccceeeEEecCCch-hhhhccCCcc-ceeccCCccchh----hc-------------cccccceee
Confidence 5555 67899999999999998 9999999886 899999887643 22 345678899
Q ss_pred eeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 332 DIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 332 ~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
+++...|| ++++|+| |.+.+||.++ +...+....-..+.. .++..+|++.+|...|..|++|..|.+|
T Consensus 365 tl~~nsD~-v~~~G~dng~~~fwdwks-g~nyQ~~~t~vqpGS-------l~sEagI~as~fDktg~rlit~eadKtI 433 (460)
T KOG0285|consen 365 TLSVNSDG-VLVSGGDNGSIMFWDWKS-GHNYQRGQTIVQPGS-------LESEAGIFASCFDKTGSRLITGEADKTI 433 (460)
T ss_pred eeeeccCc-eEEEcCCceEEEEEecCc-CcccccccccccCCc-------cccccceeEEeecccCceEEeccCCcce
Confidence 99999887 6777777 9999999986 655554432222211 1123345799999999999999999987
No 14
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.9e-35 Score=228.52 Aligned_cols=271 Identities=16% Similarity=0.221 Sum_probs=219.0
Q ss_pred CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceEEEEEEe
Q 015290 44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA 123 (409)
Q Consensus 44 ~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~ 123 (409)
.-+||+++.|.+|++|...++. +..+++-.. ..|+.+..
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~---------------------------C~rTiqh~d------------sqVNrLei-- 48 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGI---------------------------CSRTIQHPD------------SQVNRLEI-- 48 (311)
T ss_pred ceEEEeccCcceeeeeehhcCe---------------------------EEEEEecCc------------cceeeEEE--
Confidence 3589999999999999999887 566666655 78999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCC
Q 015290 124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN 203 (409)
Q Consensus 124 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 203 (409)
.|+++.|++++. -.||+||++++....... +......+....+..++.++++++- ||+++|||+..
T Consensus 49 Tpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t-----------~e~h~kNVtaVgF~~dgrWMyTgse--Dgt~kIWdlR~ 114 (311)
T KOG0315|consen 49 TPDKKDLAAAGN-QHVRLYDLNSNNPNPVAT-----------FEGHTKNVTAVGFQCDGRWMYTGSE--DGTVKIWDLRS 114 (311)
T ss_pred cCCcchhhhccC-CeeEEEEccCCCCCceeE-----------EeccCCceEEEEEeecCeEEEecCC--CceEEEEeccC
Confidence 799999988886 469999999876544332 2334456777778888899999886 99999999987
Q ss_pred cccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCE
Q 015290 204 SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 282 (409)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 282 (409)
..+.+.| .|..+|+++..+|+...|++| ++|.|++||+. ...+...+ ++.-...|.++...|+| .+
T Consensus 115 ---~~~qR~~--~~~spVn~vvlhpnQteLis~dqsg~irvWDl~-~~~c~~~l------iPe~~~~i~sl~v~~dg-sm 181 (311)
T KOG0315|consen 115 ---LSCQRNY--QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG-ENSCTHEL------IPEDDTSIQSLTVMPDG-SM 181 (311)
T ss_pred ---cccchhc--cCCCCcceEEecCCcceEEeecCCCcEEEEEcc-CCcccccc------CCCCCcceeeEEEcCCC-cE
Confidence 4455544 577999999999999999999 99999999999 44444332 45555789999999999 99
Q ss_pred EEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcc
Q 015290 283 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP 361 (409)
Q Consensus 283 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~ 361 (409)
++.+...|...+|++-+.... ..+. +...|..|.+.+..+.+|||++|||+++ |.+++||+.+..-+.
T Consensus 182 l~a~nnkG~cyvW~l~~~~~~----s~l~-------P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kl 250 (311)
T KOG0315|consen 182 LAAANNKGNCYVWRLLNHQTA----SELE-------PVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKL 250 (311)
T ss_pred EEEecCCccEEEEEccCCCcc----ccce-------EhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceee
Confidence 999999999999999774321 1111 1233677889999999999999999986 699999999853366
Q ss_pred eEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 362 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
-..+++|+.++ ++++||.||+||++|+.|+.+
T Consensus 251 e~~l~gh~rWv---------------Wdc~FS~dg~YlvTassd~~~ 282 (311)
T KOG0315|consen 251 ELVLTGHQRWV---------------WDCAFSADGEYLVTASSDHTA 282 (311)
T ss_pred EEEeecCCceE---------------EeeeeccCccEEEecCCCCce
Confidence 67788999887 799999999999999999764
No 15
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-37 Score=246.63 Aligned_cols=357 Identities=49% Similarity=0.773 Sum_probs=288.8
Q ss_pred ccceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCc
Q 015290 11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE 90 (409)
Q Consensus 11 ~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (409)
...|++.|+|+.+..+......+.|++|.|.-.|.|||+|...|+|.+|.-+... +.+
T Consensus 5 n~~~kf~QCfgdk~d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~----------------------~ce 62 (460)
T COG5170 5 NEILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSY----------------------GCE 62 (460)
T ss_pred hhhhhhHhhhcchhhcccccccceeeEEEeccccceEeecCCCceEEEeeccccc----------------------ccc
Confidence 3469999999999888888889999999999999999999999999999866433 236
Q ss_pred eeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccc
Q 015290 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (409)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (409)
|+..++|++|+.+|+|+++++++..|..|.|+....-..++..+.|++|++|.+....+....+.+....+... ..
T Consensus 63 ykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~----~~ 138 (460)
T COG5170 63 YKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSP----MG 138 (460)
T ss_pred hhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccc----cC
Confidence 78899999999999999999999999999997423335688889999999999988766554433322211100 00
Q ss_pred cCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCC
Q 015290 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISD 250 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~ 250 (409)
+.+.+.. ...++-.+ ..+..| ...+.+.+...|...++++.++.|.+.+++++|-.|.+|++....
T Consensus 139 g~~~s~~----~l~lprls-~hd~ii---------aa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D 204 (460)
T COG5170 139 GPLTSTK----ELLLPRLS-EHDEII---------AAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIID 204 (460)
T ss_pred CCcCCHH----Hhhccccc-ccceEE---------EeccceeccccceeEeeeeeecCchheeeeccceeeeeccccccC
Confidence 1000000 00000000 000001 012333444789999999999999999999999999999999888
Q ss_pred ceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccce
Q 015290 251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (409)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 330 (409)
.+..++++++..+.....-|++..|+|..++.|...+..|.|++-|+|...+|....+.++. ...+.....|.+....|
T Consensus 205 ~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~-~~D~v~~~ff~eivsSI 283 (460)
T COG5170 205 GSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL-TIDGVDVDFFEEIVSSI 283 (460)
T ss_pred CceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhh-ccCcccchhHHHHhhhh
Confidence 99999999998888888899999999998789999999999999999999888888788877 67777778888888999
Q ss_pred eeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 331 SDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 331 ~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
..+.|+++|+|+++-+..+|+|||.++...++.++.-|.....+++++|+++++|+-+.+.||.|.+.+.+||..+..
T Consensus 284 SD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNf 361 (460)
T COG5170 284 SDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNF 361 (460)
T ss_pred cceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccce
Confidence 999999999999999889999999999889999999999999999999999999999999999999999999987654
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.7e-35 Score=227.68 Aligned_cols=266 Identities=17% Similarity=0.267 Sum_probs=213.0
Q ss_pred cccC-CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290 28 ELQD-VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (409)
Q Consensus 28 ~~~h-~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (409)
.++| +..|+.+...||+++||+|+.. .|++||+.+.... ++.++.+|.
T Consensus 35 Tiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~-------------------------Pv~t~e~h~----- 83 (311)
T KOG0315|consen 35 TIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPN-------------------------PVATFEGHT----- 83 (311)
T ss_pred EEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCC-------------------------ceeEEeccC-----
Confidence 3455 5689999999999999999864 7999999987642 688999999
Q ss_pred cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (409)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (409)
+.|+++.| ..+|+.+++|+.||+++|||++...+.+.+. +..++.++...+.+..++++..
T Consensus 84 -------kNVtaVgF--~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~--~~spVn~vvlhpnQteLis~dq-------- 144 (311)
T KOG0315|consen 84 -------KNVTAVGF--QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ--HNSPVNTVVLHPNQTELISGDQ-------- 144 (311)
T ss_pred -------CceEEEEE--eecCeEEEecCCCceEEEEeccCcccchhcc--CCCCcceEEecCCcceEEeecC--------
Confidence 89999999 6899999999999999999999866655544 3456666666666666666654
Q ss_pred cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (409)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (409)
+|.|++||+... .|...+.....-.|.++++.|||.+++.+ ..|+.++|++-. ......+ .+...++.
T Consensus 145 ------sg~irvWDl~~~---~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~-~~~~s~l-~P~~k~~a 213 (311)
T KOG0315|consen 145 ------SGNIRVWDLGEN---SCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN-HQTASEL-EPVHKFQA 213 (311)
T ss_pred ------CCcEEEEEccCC---ccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccC-CCccccc-eEhhheec
Confidence 789999999763 33333334556789999999999999999 999999999973 3222111 22245789
Q ss_pred ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (409)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg 345 (409)
|.+.+..+.+||++ ++||++|.|.+++||+..+- . +.... +.+|..+++.++||.||+||++|
T Consensus 214 h~~~il~C~lSPd~-k~lat~ssdktv~iwn~~~~-~--kle~~-------------l~gh~rWvWdc~FS~dg~YlvTa 276 (311)
T KOG0315|consen 214 HNGHILRCLLSPDV-KYLATCSSDKTVKIWNTDDF-F--KLELV-------------LTGHQRWVWDCAFSADGEYLVTA 276 (311)
T ss_pred ccceEEEEEECCCC-cEEEeecCCceEEEEecCCc-e--eeEEE-------------eecCCceEEeeeeccCccEEEec
Confidence 99999999999999 99999999999999998874 1 00122 34567899999999999999999
Q ss_pred e-cCeEEEEEccCCCcceEEEecccCcc
Q 015290 346 D-YMNLKLWDIRMDSTPVATFKIHEHLR 372 (409)
Q Consensus 346 ~-~~~v~iwd~~~~~~~~~~~~~~~~~~ 372 (409)
+ |+.+++||+.. ++.+..+.+|....
T Consensus 277 ssd~~~rlW~~~~-~k~v~qy~gh~K~~ 303 (311)
T KOG0315|consen 277 SSDHTARLWDLSA-GKEVRQYQGHHKAA 303 (311)
T ss_pred CCCCceeeccccc-CceeeecCCccccc
Confidence 6 59999999986 89999999988763
No 17
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-34 Score=227.23 Aligned_cols=253 Identities=19% Similarity=0.284 Sum_probs=192.5
Q ss_pred cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (409)
..+|...|..+..++||++.++++.|+++++||+.+++ ..+.|.||.
T Consensus 59 ~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~---------------------------~t~~f~GH~------ 105 (315)
T KOG0279|consen 59 LTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE---------------------------STRRFVGHT------ 105 (315)
T ss_pred eeccceEecceEEccCCceEEeccccceEEEEEecCCc---------------------------EEEEEEecC------
Confidence 34599999999999999999999999999999999886 467899999
Q ss_pred ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (409)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
..|.+++| ++|...+++|+.|++|++|+..+.............=+.|+.|.+.+ ...++.+
T Consensus 106 ------~dVlsva~--s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~----------~~p~Ivs 167 (315)
T KOG0279|consen 106 ------KDVLSVAF--STDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE----------SNPIIVS 167 (315)
T ss_pred ------CceEEEEe--cCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC----------CCcEEEE
Confidence 89999999 89999999999999999999987654443322113334444444442 1344444
Q ss_pred ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (409)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (409)
++. |+++++||+++ .+....+ .+|.+.++.++++|||..+++| .||.+.+||++ .++.+.. .+|
T Consensus 168 ~s~--DktvKvWnl~~---~~l~~~~-~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~-~~k~lys--------l~a 232 (315)
T KOG0279|consen 168 ASW--DKTVKVWNLRN---CQLRTTF-IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLN-EGKNLYS--------LEA 232 (315)
T ss_pred ccC--CceEEEEccCC---cchhhcc-ccccccEEEEEECCCCCEEecCCCCceEEEEEcc-CCceeEe--------ccC
Confidence 444 99999999987 3444444 8999999999999999999999 99999999999 5665554 457
Q ss_pred cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (409)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~ 346 (409)
...|.+++|+|+. ..|+ ...+..|+|||+.++... ..+.....++ ....-.....+++|++||+.|++|-
T Consensus 233 ~~~v~sl~fspnr-ywL~-~at~~sIkIwdl~~~~~v----~~l~~d~~g~----s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 233 FDIVNSLCFSPNR-YWLC-AATATSIKIWDLESKAVV----EELKLDGIGP----SSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred CCeEeeEEecCCc-eeEe-eccCCceEEEeccchhhh----hhcccccccc----ccccCCcEEEEEEEcCCCcEEEeee
Confidence 8899999999985 4444 445566999999987642 2222100011 1111133567899999999999995
Q ss_pred -cCeEEEEEcc
Q 015290 347 -YMNLKLWDIR 356 (409)
Q Consensus 347 -~~~v~iwd~~ 356 (409)
|+.|++|.+.
T Consensus 303 td~~irv~qv~ 313 (315)
T KOG0279|consen 303 TDNVIRVWQVA 313 (315)
T ss_pred cCCcEEEEEee
Confidence 6999999975
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.8e-36 Score=246.73 Aligned_cols=275 Identities=18% Similarity=0.307 Sum_probs=221.5
Q ss_pred CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (409)
+..|..|.|.|+|+.|++|+..|.+.+|+..+- ..-..++.|.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f---------------------------nFEtilQaHD---------- 138 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF---------------------------NFETILQAHD---------- 138 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCcee---------------------------eHHHHhhhhc----------
Confidence 458999999999999999999999999997432 2234578888
Q ss_pred eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (409)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (409)
.+|+++.| ++++..+++|+.+|.|++|+.+-...+ ....+....|.++.|++.+..++++..
T Consensus 139 --s~Vr~m~w--s~~g~wmiSgD~gG~iKyWqpnmnnVk-~~~ahh~eaIRdlafSpnDskF~t~Sd------------- 200 (464)
T KOG0284|consen 139 --SPVRTMKW--SHNGTWMISGDKGGMIKYWQPNMNNVK-IIQAHHAEAIRDLAFSPNDSKFLTCSD------------- 200 (464)
T ss_pred --ccceeEEE--ccCCCEEEEcCCCceEEecccchhhhH-HhhHhhhhhhheeccCCCCceeEEecC-------------
Confidence 89999999 799999999999999999998755443 333333455566666665555555543
Q ss_pred ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (409)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (409)
|+.|+|||.....+... + .+|.-.|.+++|+|....+++| .|..|++||.+ ++.++.+ +.+|+..|
T Consensus 201 -Dg~ikiWdf~~~kee~v---L-~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr-Sg~cl~t-------lh~HKntV 267 (464)
T KOG0284|consen 201 -DGTIKIWDFRMPKEERV---L-RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR-SGSCLAT-------LHGHKNTV 267 (464)
T ss_pred -CCeEEEEeccCCchhhe---e-ccCCCCcceeccCCccceeEEccCCceeEeecCC-Ccchhhh-------hhhccceE
Confidence 89999999976443333 2 7999999999999999999999 99999999999 7888877 78999999
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC-CEEEEee-cC
Q 015290 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YM 348 (409)
Q Consensus 271 ~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~sg~-~~ 348 (409)
..+.|+|++ ++|+++|.|..++++|+++-+. +.. +.+|...+++++|+|-. .+|++|+ ||
T Consensus 268 l~~~f~~n~-N~Llt~skD~~~kv~DiR~mkE----l~~-------------~r~Hkkdv~~~~WhP~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 268 LAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKE----LFT-------------YRGHKKDVTSLTWHPLNESLFTSGGSDG 329 (464)
T ss_pred EEEEEcCCC-CeeEEccCCceEEEEehhHhHH----HHH-------------hhcchhhheeeccccccccceeeccCCC
Confidence 999999999 9999999999999999995332 122 35567899999999965 4556665 69
Q ss_pred eEEEEEccCCCcceEEE-ecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 349 NLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 349 ~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
.|..|.+.. .+++..+ .+|...+ ++++|+|=|..|++|+.|.++
T Consensus 330 svvh~~v~~-~~p~~~i~~AHd~~i---------------wsl~~hPlGhil~tgsnd~t~ 374 (464)
T KOG0284|consen 330 SVVHWVVGL-EEPLGEIPPAHDGEI---------------WSLAYHPLGHILATGSNDRTV 374 (464)
T ss_pred ceEEEeccc-cccccCCCcccccce---------------eeeeccccceeEeecCCCcce
Confidence 999999974 4554444 3566655 899999999999999999876
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.2e-35 Score=258.72 Aligned_cols=203 Identities=20% Similarity=0.382 Sum_probs=182.4
Q ss_pred ccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (409)
Q Consensus 27 ~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (409)
...+|.++|..+.|+|+.++|++|+.|++||+|.+.+.. ++..++||.
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s---------------------------~~V~y~GH~----- 493 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS---------------------------CLVIYKGHL----- 493 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccce---------------------------eEEEecCCC-----
Confidence 356799999999999999999999999999999999765 577889999
Q ss_pred cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (409)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (409)
.+|+.+.| +|-|-+|||++.|++.++|.......
T Consensus 494 -------~PVwdV~F--~P~GyYFatas~D~tArLWs~d~~~P------------------------------------- 527 (707)
T KOG0263|consen 494 -------APVWDVQF--APRGYYFATASHDQTARLWSTDHNKP------------------------------------- 527 (707)
T ss_pred -------cceeeEEe--cCCceEEEecCCCceeeeeecccCCc-------------------------------------
Confidence 89999999 78999999999999999999876533
Q ss_pred cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (409)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (409)
.+.| .+|.+.|.|++|+|+..++++| .|.++++||+. ++..+++ +.|
T Consensus 528 -----------------------lRif-aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~-~G~~VRi-------F~G 575 (707)
T KOG0263|consen 528 -----------------------LRIF-AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVS-TGNSVRI-------FTG 575 (707)
T ss_pred -----------------------hhhh-cccccccceEEECCcccccccCCCCceEEEEEcC-CCcEEEE-------ecC
Confidence 3333 7899999999999999999999 99999999999 8888888 799
Q ss_pred ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (409)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg 345 (409)
|.++|.+++|+|+| .+|++|+.||.|.+||+.++++ +..+ .+|.+.|.++.|+.||..||+|
T Consensus 576 H~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~~----v~~l-------------~~Ht~ti~SlsFS~dg~vLasg 637 (707)
T KOG0263|consen 576 HKGPVTALAFSPCG-RYLASGDEDGLIKIWDLANGSL----VKQL-------------KGHTGTIYSLSFSRDGNVLASG 637 (707)
T ss_pred CCCceEEEEEcCCC-ceEeecccCCcEEEEEcCCCcc----hhhh-------------hcccCceeEEEEecCCCEEEec
Confidence 99999999999999 9999999999999999999875 2333 4457899999999999999998
Q ss_pred e-cCeEEEEEccC
Q 015290 346 D-YMNLKLWDIRM 357 (409)
Q Consensus 346 ~-~~~v~iwd~~~ 357 (409)
+ |++|++||+..
T Consensus 638 g~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 638 GADNSVRLWDLTK 650 (707)
T ss_pred CCCCeEEEEEchh
Confidence 7 59999999874
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-33 Score=249.11 Aligned_cols=309 Identities=15% Similarity=0.238 Sum_probs=224.8
Q ss_pred CccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (409)
Q Consensus 26 ~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (409)
.+..+|...+++++++|||+++|+|+.||.|+|||...+- |..+|..|+
T Consensus 344 lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf---------------------------C~vTFteHt---- 392 (893)
T KOG0291|consen 344 LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF---------------------------CFVTFTEHT---- 392 (893)
T ss_pred eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce---------------------------EEEEeccCC----
Confidence 3455699999999999999999999999999999998776 688999999
Q ss_pred ccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceecc-CCCCCce
Q 015290 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH-NPPSFAH 184 (409)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 184 (409)
..|+.+.| +..|+.+++++.||+|+.||+...+.-+.+...... -+++. ..+++..
T Consensus 393 --------s~Vt~v~f--~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~-------------QfscvavD~sGel 449 (893)
T KOG0291|consen 393 --------SGVTAVQF--TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI-------------QFSCVAVDPSGEL 449 (893)
T ss_pred --------CceEEEEE--EecCCEEEEeecCCeEEeeeecccceeeeecCCCce-------------eeeEEEEcCCCCE
Confidence 89999999 689999999999999999999887766554422222 22222 2233333
Q ss_pred eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (409)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (409)
+..|.. ..-.|.+|++++ ++.+..+ .+|.++|.+++|+|.+..|+++ .|.+|++||+-.......++
T Consensus 450 V~AG~~-d~F~IfvWS~qT---GqllDiL-sGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl------- 517 (893)
T KOG0291|consen 450 VCAGAQ-DSFEIFVWSVQT---GQLLDIL-SGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL------- 517 (893)
T ss_pred EEeecc-ceEEEEEEEeec---Ceeeehh-cCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-------
Confidence 333333 122899999987 6666665 8999999999999999999999 99999999998444444442
Q ss_pred cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccccccccc---ccCCccccc----ccccceeeeEec
Q 015290 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE---SHGSKSFFT----EIIASISDIKFA 336 (409)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~i~~~~~s 336 (409)
.+...+..++|.|+| +-++++..||.|.+||...+... ...++..+ +......+. ......+.+++|
T Consensus 518 -~i~sdvl~vsfrPdG-~elaVaTldgqItf~d~~~~~q~----~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~yS 591 (893)
T KOG0291|consen 518 -EIRSDVLAVSFRPDG-KELAVATLDGQITFFDIKEAVQV----GSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYS 591 (893)
T ss_pred -eeccceeEEEEcCCC-CeEEEEEecceEEEEEhhhceee----ccccchhhccccccccceeehhhcccCCceEEEEEc
Confidence 245678999999999 99999999999999999876432 11111000 000111111 123578999999
Q ss_pred cCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcc-------------cc-----ccccc------------------
Q 015290 337 NDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR-------------PK-----LCDLY------------------ 379 (409)
Q Consensus 337 ~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~-------------~~-----~~~~~------------------ 379 (409)
+||.+|++|+. +.|+|||+.. +-.++.+.-..+.- .. +.+..
T Consensus 592 aDG~~IlAgG~sn~iCiY~v~~-~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~g 670 (893)
T KOG0291|consen 592 ADGKCILAGGESNSICIYDVPE-GVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRG 670 (893)
T ss_pred CCCCEEEecCCcccEEEEECch-hheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccC
Confidence 99999999987 9999999985 65565554211110 00 00000
Q ss_pred -----CCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290 380 -----NNDSIFDKFECSVSGDGLHFATGSYRRD 407 (409)
Q Consensus 380 -----~~~~~~~v~~~~~spdg~~l~s~s~dg~ 407 (409)
.-.....|+++.|||.|+-+|.++..|-
T Consensus 671 dlssRr~rpeIrv~sv~fsPtgraFAaatTEGl 703 (893)
T KOG0291|consen 671 DLSSRRFRPEIRVTSVQFSPTGRAFAAATTEGL 703 (893)
T ss_pred CccccccCceEEEEEEEECCCcCeeeeecccce
Confidence 0011445789999999999999888773
No 21
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.1e-33 Score=222.21 Aligned_cols=249 Identities=16% Similarity=0.207 Sum_probs=206.3
Q ss_pred ceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCccccccccccc
Q 015290 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (409)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (409)
.++..+.|+||. +.|.++.| ++|+++|++++.||.+.|||..+......++ .+
T Consensus 44 ~~~~rr~LkGH~------------~Ki~~~~w--s~Dsr~ivSaSqDGklIvWDs~TtnK~haip-------------l~ 96 (343)
T KOG0286|consen 44 QMRTRRTLKGHL------------NKIYAMDW--STDSRRIVSASQDGKLIVWDSFTTNKVHAIP-------------LP 96 (343)
T ss_pred eeeeEEEecccc------------cceeeeEe--cCCcCeEEeeccCCeEEEEEcccccceeEEe-------------cC
Confidence 345567899999 99999999 7999999999999999999987765444332 23
Q ss_pred ccCceeccCCCCCceeecccccccceeEEEecCCc--ccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEc
Q 015290 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS--VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL 246 (409)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~ 246 (409)
..-+..+.++|++.++++|+. |+...+|++.+. .....+...+.+|.+.+.|..|-+|+ .|+++ .|.++.+||+
T Consensus 97 s~WVMtCA~sPSg~~VAcGGL--dN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDi 173 (343)
T KOG0286|consen 97 SSWVMTCAYSPSGNFVACGGL--DNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDI 173 (343)
T ss_pred ceeEEEEEECCCCCeEEecCc--CceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEc
Confidence 456778899999999999998 888888888754 22223333348999999999998855 67787 9999999999
Q ss_pred cCCCceeeeeecCCCcCcCccCceEEEEEeC-CCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccc
Q 015290 247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 325 (409)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (409)
+ +++.+.. +.+|.+.|.+++++| ++ +.|++|+.|+..++||+|.+.. .+. |.+
T Consensus 174 e-~g~~~~~-------f~GH~gDV~slsl~p~~~-ntFvSg~cD~~aklWD~R~~~c----~qt-------------F~g 227 (343)
T KOG0286|consen 174 E-TGQQTQV-------FHGHTGDVMSLSLSPSDG-NTFVSGGCDKSAKLWDVRSGQC----VQT-------------FEG 227 (343)
T ss_pred c-cceEEEE-------ecCCcccEEEEecCCCCC-CeEEecccccceeeeeccCcce----eEe-------------ecc
Confidence 9 7777776 789999999999999 66 9999999999999999999753 233 556
Q ss_pred cccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEccc
Q 015290 326 IIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (409)
Q Consensus 326 ~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~ 404 (409)
|...|+++.|.|+|.-+++|+| ++.|+||++. .+.+..|. |.. .+++|++++||..|++|.+|..
T Consensus 228 hesDINsv~ffP~G~afatGSDD~tcRlyDlRa-D~~~a~ys-~~~------------~~~gitSv~FS~SGRlLfagy~ 293 (343)
T KOG0286|consen 228 HESDINSVRFFPSGDAFATGSDDATCRLYDLRA-DQELAVYS-HDS------------IICGITSVAFSKSGRLLFAGYD 293 (343)
T ss_pred cccccceEEEccCCCeeeecCCCceeEEEeecC-CcEEeeec-cCc------------ccCCceeEEEcccccEEEeeec
Confidence 6889999999999999999987 9999999997 67777776 333 2456689999999999999988
Q ss_pred CCCC
Q 015290 405 RRDN 408 (409)
Q Consensus 405 dg~i 408 (409)
|.++
T Consensus 294 d~~c 297 (343)
T KOG0286|consen 294 DFTC 297 (343)
T ss_pred CCce
Confidence 8765
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.1e-33 Score=245.11 Aligned_cols=290 Identities=17% Similarity=0.269 Sum_probs=224.1
Q ss_pred CCcEEEEEECCCCCEEEEEecC-CeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRG-GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
..+|..++|+..|.+||.|+.. |.+.||+.+... ++...++|.
T Consensus 307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs---------------------------YVlKQQgH~--------- 350 (893)
T KOG0291|consen 307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES---------------------------YVLKQQGHS--------- 350 (893)
T ss_pred cceeeEEEecccCCEEEEcCCccceEEEEEeeccc---------------------------eeeeccccc---------
Confidence 4689999999999999998754 899999998765 566789999
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
..++++++ +|||+++++|+.||.|+|||...+-+...+..+. ..+....+...+..+.+.+.
T Consensus 351 ---~~i~~l~Y--SpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHt-------------s~Vt~v~f~~~g~~llssSL 412 (893)
T KOG0291|consen 351 ---DRITSLAY--SPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHT-------------SGVTAVQFTARGNVLLSSSL 412 (893)
T ss_pred ---cceeeEEE--CCCCcEEEeccCCCcEEEEeccCceEEEEeccCC-------------CceEEEEEEecCCEEEEeec
Confidence 89999999 8999999999999999999999887766554332 22333333333444444444
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cC-CeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (409)
||+||.||+.. ..+.++|.........|++..|.|..+.+| .| -.|.+|+++ +++.+.+ +.+|.+
T Consensus 413 --DGtVRAwDlkR---YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q-TGqllDi-------LsGHEg 479 (893)
T KOG0291|consen 413 --DGTVRAWDLKR---YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ-TGQLLDI-------LSGHEG 479 (893)
T ss_pred --CCeEEeeeecc---cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEee-cCeeeeh-------hcCCCC
Confidence 99999999965 667777755666778899999999999888 44 579999999 8998887 799999
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c
Q 015290 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (409)
Q Consensus 269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~ 347 (409)
+|.+++|+|.+ ..|+++|.|.+|++||+-..... ...++. ...+..++|+|||+-||+++ |
T Consensus 480 PVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~~---vEtl~i--------------~sdvl~vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 480 PVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSGT---VETLEI--------------RSDVLAVSFRPDGKELAVATLD 541 (893)
T ss_pred cceeeEEcccc-CeEEeccccceEEEEEeeccCce---eeeEee--------------ccceeEEEEcCCCCeEEEEEec
Confidence 99999999999 99999999999999998664211 233333 45799999999999999987 6
Q ss_pred CeEEEEEccCCCcceEEEecccCccccc--ccc-----cCCCCccceeeEEEcCCCCeEEEcccCCCCC
Q 015290 348 MNLKLWDIRMDSTPVATFKIHEHLRPKL--CDL-----YNNDSIFDKFECSVSGDGLHFATGSYRRDNG 409 (409)
Q Consensus 348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~v~~~~~spdg~~l~s~s~dg~i~ 409 (409)
|.|.+||... +..+..+.+........ .+. ......| +.+++|+||..|++|+..+.|+
T Consensus 542 gqItf~d~~~-~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~F--tti~ySaDG~~IlAgG~sn~iC 607 (893)
T KOG0291|consen 542 GQITFFDIKE-AVQVGSIDGRKDLSGGRKETDRITAENSAKGKTF--TTICYSADGKCILAGGESNSIC 607 (893)
T ss_pred ceEEEEEhhh-ceeeccccchhhccccccccceeehhhcccCCce--EEEEEcCCCCEEEecCCcccEE
Confidence 9999999975 55555554433321110 000 0111222 7999999999999999988774
No 23
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.1e-32 Score=224.37 Aligned_cols=282 Identities=17% Similarity=0.180 Sum_probs=226.2
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (409)
Q Consensus 29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (409)
..|++.|.+++.+|+.+++|||+.|....||+..+++ ....+.+|.
T Consensus 61 ~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge---------------------------~~~eltgHK------- 106 (399)
T KOG0296|consen 61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE---------------------------FAGELTGHK------- 106 (399)
T ss_pred hhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc---------------------------ceeEecCCC-------
Confidence 3499999999999999999999999999999999887 367889999
Q ss_pred cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (409)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (409)
..|+++.| +.+|.+|+||..+|.|+||+..++........ .-..+.-..+++...+++.|
T Consensus 107 -----DSVt~~~F--shdgtlLATGdmsG~v~v~~~stg~~~~~~~~-------------e~~dieWl~WHp~a~illAG 166 (399)
T KOG0296|consen 107 -----DSVTCCSF--SHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ-------------EVEDIEWLKWHPRAHILLAG 166 (399)
T ss_pred -----CceEEEEE--ccCceEEEecCCCccEEEEEcccCceEEEeec-------------ccCceEEEEecccccEEEee
Confidence 89999999 89999999999999999999999887665431 22345566778877888888
Q ss_pred cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeec------CCC
Q 015290 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM------KPS 261 (409)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~------~~~ 261 (409)
.. ||.+..|.+... ...+.+ .+|..++++=.|.|+|+.++++ .||+|++||.. +++++..+.. +..
T Consensus 167 ~~--DGsvWmw~ip~~---~~~kv~-~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~k-tg~p~~~~~~~e~~~~~~~ 239 (399)
T KOG0296|consen 167 ST--DGSVWMWQIPSQ---ALCKVM-SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPK-TGQPLHKITQAEGLELPCI 239 (399)
T ss_pred cC--CCcEEEEECCCc---ceeeEe-cCCCCCcccccccCCCceEEEEecCceEEEEecC-CCceeEEecccccCcCCcc
Confidence 76 999999999764 333444 8999999999999999999999 99999999998 6666655441 100
Q ss_pred c--------------------------------------CcCccCceEEEE---EeCCCCCEEEEEeCCCeEEEEeCCCc
Q 015290 262 N--------------------------------------MDDLTEVITSAE---FHPIYCNLLAYSSSRGFVRLVDMRQS 300 (409)
Q Consensus 262 ~--------------------------------------~~~~~~~v~~~~---~~p~~~~~l~s~s~dg~i~iwd~~~~ 300 (409)
. ...+...+.++. ++..- .++|+|+-||+|.|||+...
T Consensus 240 ~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l-pL~A~G~vdG~i~iyD~a~~ 318 (399)
T KOG0296|consen 240 SLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKL-PLAACGSVDGTIAIYDLAAS 318 (399)
T ss_pred ccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccccc-chhhcccccceEEEEecccc
Confidence 0 001122222333 33333 57889999999999999876
Q ss_pred cccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCccccccccc
Q 015290 301 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY 379 (409)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (409)
++. +. ..|..+|..+.|-+ ..+|++++ +|.|+.||.++ |+++..+.+|...+
T Consensus 319 ~~R----~~--------------c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRt-G~l~~~y~GH~~~I------- 371 (399)
T KOG0296|consen 319 TLR----HI--------------CEHEDGVTKLKWLN-TDYLLTACANGKVRQWDART-GQLKFTYTGHQMGI------- 371 (399)
T ss_pred hhh----ee--------------ccCCCceEEEEEcC-cchheeeccCceEEeeeccc-cceEEEEecCchhe-------
Confidence 531 22 22367899999999 67888776 59999999998 99999999999987
Q ss_pred CCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290 380 NNDSIFDKFECSVSGDGLHFATGSYRRD 407 (409)
Q Consensus 380 ~~~~~~~v~~~~~spdg~~l~s~s~dg~ 407 (409)
.+++++|++++++|+|.|++
T Consensus 372 --------l~f~ls~~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 372 --------LDFALSPQKRLVVTVSDDNT 391 (399)
T ss_pred --------eEEEEcCCCcEEEEecCCCe
Confidence 69999999999999999986
No 24
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.8e-34 Score=240.96 Aligned_cols=288 Identities=17% Similarity=0.225 Sum_probs=225.1
Q ss_pred CccccCCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc
Q 015290 26 DEELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (409)
Q Consensus 26 ~~~~~h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (409)
....+|...|+++.|.| .+.+|++|+.|+.|+||++.+.. ++++++.||.
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--------------------------~~lrtf~gH~--- 258 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--------------------------RCLRTFKGHR--- 258 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc--------------------------ceehhhhcch---
Confidence 34456999999999999 89999999999999999998743 3789999999
Q ss_pred cccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (409)
Q Consensus 105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (409)
.+|.+++| +.+|..|++++.|++|++||+++|++...+.... .+.|+.+.+.+. ..
T Consensus 259 ---------k~Vrd~~~--s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~--~~~cvkf~pd~~-----------n~ 314 (503)
T KOG0282|consen 259 ---------KPVRDASF--NNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDK--VPTCVKFHPDNQ-----------NI 314 (503)
T ss_pred ---------hhhhhhhc--cccCCeeeeeecceeeeeeccccceEEEEEecCC--CceeeecCCCCC-----------cE
Confidence 99999999 8999999999999999999999998876654332 223333332221 23
Q ss_pred eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (409)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (409)
+..|.. ++.|+.||+.+ ++.++.+ ..|-+.|..+.|-+++++++++ +|+++++|+.+ ....++.+ .
T Consensus 315 fl~G~s--d~ki~~wDiRs---~kvvqeY-d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~-~~v~ik~i------~ 381 (503)
T KOG0282|consen 315 FLVGGS--DKKIRQWDIRS---GKVVQEY-DRHLGAILDITFVDEGRRFISSSDDKSVRIWENR-IPVPIKNI------A 381 (503)
T ss_pred EEEecC--CCcEEEEeccc---hHHHHHH-HhhhhheeeeEEccCCceEeeeccCccEEEEEcC-CCccchhh------c
Confidence 333333 89999999987 5566666 7889999999999999999999 99999999998 33333321 2
Q ss_pred cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (409)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 343 (409)
..+.....++..+|++ .+++.-+.|+.|.+|.+...- .....+.+++|.. .+.-..+.|||||.+|+
T Consensus 382 ~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~-r~nkkK~feGh~v-----------aGys~~v~fSpDG~~l~ 448 (503)
T KOG0282|consen 382 DPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPPF-RLNKKKRFEGHSV-----------AGYSCQVDFSPDGRTLC 448 (503)
T ss_pred chhhccCcceecCCCC-CeehhhccCceEEEEeccccc-ccCHhhhhcceec-----------cCceeeEEEcCCCCeEE
Confidence 2233445689999999 999999999999999865421 1111234444211 24567799999999999
Q ss_pred Eee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCC-CeEEEcccCCCC
Q 015290 344 SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYRRDN 408 (409)
Q Consensus 344 sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~l~s~s~dg~i 408 (409)
+|+ +|.+.+||.++ .+.+..++.|.... ..+.|+|-. ..+|||+.||.|
T Consensus 449 SGdsdG~v~~wdwkt-~kl~~~lkah~~~c---------------i~v~wHP~e~Skvat~~w~G~I 499 (503)
T KOG0282|consen 449 SGDSDGKVNFWDWKT-TKLVSKLKAHDQPC---------------IGVDWHPVEPSKVATCGWDGLI 499 (503)
T ss_pred eecCCccEEEeechh-hhhhhccccCCcce---------------EEEEecCCCcceeEecccCcee
Confidence 996 59999999987 89999999998775 589999964 579999999986
No 25
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-33 Score=230.76 Aligned_cols=281 Identities=15% Similarity=0.172 Sum_probs=224.7
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
|.+.|+.+.||++|+|||+++.|.+..+|++.... ..+...++.+|.
T Consensus 223 htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~------------------------~~kl~~tlvgh~--------- 269 (519)
T KOG0293|consen 223 HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV------------------------HFKLKKTLVGHS--------- 269 (519)
T ss_pred CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc------------------------ceeeeeeeeccc---------
Confidence 99999999999999999999999999999987654 346788999999
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
.+|..|.| |||.++|++|+.|..+++||+.++.....+... ......++.|.+++..+.+|+.
T Consensus 270 ---~~V~yi~w--SPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~------------~~~S~~sc~W~pDg~~~V~Gs~ 332 (519)
T KOG0293|consen 270 ---QPVSYIMW--SPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG------------LGFSVSSCAWCPDGFRFVTGSP 332 (519)
T ss_pred ---CceEEEEE--CCCCCeEEecCchHheeeccCCcchhhhhcccC------------cCCCcceeEEccCCceeEecCC
Confidence 89999999 899999999999999999999999876654422 1234567778888888888776
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (409)
|+.+..||++... ...........|.+++..+||+++++. .|..|++++.+ ....... .....+
T Consensus 333 --dr~i~~wdlDgn~----~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e-~~~dr~l--------ise~~~ 397 (519)
T KOG0293|consen 333 --DRTIIMWDLDGNI----LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNRE-ARVDRGL--------ISEEQP 397 (519)
T ss_pred --CCcEEEecCCcch----hhcccccccceeEEEEEcCCCcEEEEEecccceeeechh-hhhhhcc--------ccccCc
Confidence 8999999998633 222211223568999999999999998 99999999998 4333322 223467
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEecc-CCCEEEEeec-
Q 015290 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY- 347 (409)
Q Consensus 270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~sg~~- 347 (409)
|++++.+.++ +++++.-.+..+++||+...++ +..+.+|..+ .-+..-+|-- +..++|+|++
T Consensus 398 its~~iS~d~-k~~LvnL~~qei~LWDl~e~~l----v~kY~Ghkq~-----------~fiIrSCFgg~~~~fiaSGSED 461 (519)
T KOG0293|consen 398 ITSFSISKDG-KLALVNLQDQEIHLWDLEENKL----VRKYFGHKQG-----------HFIIRSCFGGGNDKFIASGSED 461 (519)
T ss_pred eeEEEEcCCC-cEEEEEcccCeeEEeecchhhH----HHHhhccccc-----------ceEEEeccCCCCcceEEecCCC
Confidence 9999999999 9999988999999999987654 3444443221 2344445543 4589999985
Q ss_pred CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCC-CCeEEEcccCCCC
Q 015290 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYRRDN 408 (409)
Q Consensus 348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~s~s~dg~i 408 (409)
+.|+||+..+ ++++.++.||...+ .+++|+|. -.++|++|+||+|
T Consensus 462 ~kvyIWhr~s-gkll~~LsGHs~~v---------------NcVswNP~~p~m~ASasDDgtI 507 (519)
T KOG0293|consen 462 SKVYIWHRIS-GKLLAVLSGHSKTV---------------NCVSWNPADPEMFASASDDGTI 507 (519)
T ss_pred ceEEEEEccC-CceeEeecCCccee---------------eEEecCCCCHHHhhccCCCCeE
Confidence 9999999986 99999999999876 59999995 5689999999997
No 26
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-32 Score=215.31 Aligned_cols=286 Identities=13% Similarity=0.129 Sum_probs=226.2
Q ss_pred CCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc
Q 015290 25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (409)
Q Consensus 25 ~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (409)
++...+|..+++.+.|+.+|.+|.+|+.|.++.||-..+++. +.++.||+
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer---------------------------lGty~GHt--- 52 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER---------------------------LGTYDGHT--- 52 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce---------------------------eeeecCCC---
Confidence 345567999999999999999999999999999999887773 68899999
Q ss_pred cccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (409)
Q Consensus 105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (409)
+.|+|+.. +.+.+++++|+.|.++++||+.+|+.+...+.. ..+..+.++..+..
T Consensus 53 ---------GavW~~Di--d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~--------------~~Vk~~~F~~~gn~ 107 (327)
T KOG0643|consen 53 ---------GAVWCCDI--DWDSKHLITGSADQTAKLWDVETGKQLATWKTN--------------SPVKRVDFSFGGNL 107 (327)
T ss_pred ---------ceEEEEEe--cCCcceeeeccccceeEEEEcCCCcEEEEeecC--------------CeeEEEeeccCCcE
Confidence 99999999 789999999999999999999999887765432 22334444444433
Q ss_pred eeccc---ccccceeEEEecCCcc----cceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeee
Q 015290 185 GYHLE---WTENMATKIANVGNSV----HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV 256 (409)
Q Consensus 185 ~~~~~---~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~ 256 (409)
+.... ....+.|.+++++... ...+.... ..+...++.+-|.|-+++|++| .||.|..||.+...+.+..
T Consensus 108 ~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI-~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s- 185 (327)
T KOG0643|consen 108 ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI-PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDS- 185 (327)
T ss_pred EEEEehhhcCcceEEEEEEccCChhhhcccCceEEe-cCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeec-
Confidence 33222 1345578999988543 44555555 5677889999999999999999 9999999999943444444
Q ss_pred ecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEec
Q 015290 257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (409)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 336 (409)
...|...|+.++++|+. .+|+++|.|.+-++||.++-+. ++.+.. ..++++.+++
T Consensus 186 ------~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v----~Kty~t--------------e~PvN~aais 240 (327)
T KOG0643|consen 186 ------DEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEV----LKTYTT--------------ERPVNTAAIS 240 (327)
T ss_pred ------hhhhccccccccccCCc-ceEEecccCccceeeeccceee----EEEeee--------------cccccceecc
Confidence 56788899999999999 9999999999999999998654 466665 5689999999
Q ss_pred cCCCEEEEee--c-CeEEE------------EEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEE
Q 015290 337 NDGQHLLSRD--Y-MNLKL------------WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (409)
Q Consensus 337 ~~g~~l~sg~--~-~~v~i------------wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s 401 (409)
|...+++.|+ + ..|.- |++-. .+.+..+++|-+++ .+++|+|||+..++
T Consensus 241 P~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~-eEEigrvkGHFGPI---------------NsvAfhPdGksYsS 304 (327)
T KOG0643|consen 241 PLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIF-EEEIGRVKGHFGPI---------------NSVAFHPDGKSYSS 304 (327)
T ss_pred cccceEEecCCceeeeeeeecccccchhhhHHHHHH-HHHhccccccccCc---------------ceeEECCCCccccc
Confidence 9887777654 2 33332 33322 35677888999887 59999999999999
Q ss_pred cccCCCC
Q 015290 402 GSYRRDN 408 (409)
Q Consensus 402 ~s~dg~i 408 (409)
|++||.|
T Consensus 305 GGEDG~V 311 (327)
T KOG0643|consen 305 GGEDGYV 311 (327)
T ss_pred CCCCceE
Confidence 9999986
No 27
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.2e-31 Score=232.89 Aligned_cols=277 Identities=22% Similarity=0.336 Sum_probs=220.7
Q ss_pred cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (409)
Q Consensus 30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (409)
.|.++|++++|+|++++|++++.||.|++|++.++. ....+..|.
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~---------------------------~~~~~~~~~-------- 51 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE---------------------------LLRTLKGHT-------- 51 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC---------------------------cEEEEecCC--------
Confidence 489999999999999999999999999999998765 245567787
Q ss_pred ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (409)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (409)
..+..+.| .+++++|++++.|+.|++|++.+++.......+ ...+..+.+.+...+++.+.
T Consensus 52 ----~~i~~~~~--~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~~~~~~ 112 (289)
T cd00200 52 ----GPVRDVAA--SADGTYLASGSSDKTIRLWDLETGECVRTLTGH-------------TSYVSSVAFSPDGRILSSSS 112 (289)
T ss_pred ----cceeEEEE--CCCCCEEEEEcCCCeEEEEEcCcccceEEEecc-------------CCcEEEEEEcCCCCEEEEec
Confidence 78899999 688889999999999999999876444332211 11233333444445555554
Q ss_pred ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (409)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (409)
.++.+++|++.. .+....+ ..|...+.+++|+|++.+++++ .++.|++||++ ..+.... +..|..
T Consensus 113 --~~~~i~~~~~~~---~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~-------~~~~~~ 178 (289)
T cd00200 113 --RDKTIKVWDVET---GKCLTTL-RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR-TGKCVAT-------LTGHTG 178 (289)
T ss_pred --CCCeEEEEECCC---cEEEEEe-ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc-cccccee-------EecCcc
Confidence 378999999974 3445544 5788899999999999999888 69999999998 5555554 456778
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c
Q 015290 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (409)
Q Consensus 269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~ 347 (409)
.+.++.|+|++ +.+++++.++.|++||++.++. ...+. .|...+.+++|+|++.++++++ +
T Consensus 179 ~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~----~~~~~-------------~~~~~i~~~~~~~~~~~~~~~~~~ 240 (289)
T cd00200 179 EVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGKC----LGTLR-------------GHENGVNSVAFSPDGYLLASGSED 240 (289)
T ss_pred ccceEEECCCc-CEEEEecCCCcEEEEECCCCce----ecchh-------------hcCCceEEEEEcCCCcEEEEEcCC
Confidence 99999999999 8999999999999999987543 12222 2356899999999999999998 6
Q ss_pred CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
+.|++||+.. +++...+..|...+ .+++|+|++++|++++.||.|
T Consensus 241 ~~i~i~~~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~~l~~~~~d~~i 285 (289)
T cd00200 241 GTIRVWDLRT-GECVQTLSGHTNSV---------------TSLAWSPDGKRLASGSADGTI 285 (289)
T ss_pred CcEEEEEcCC-ceeEEEccccCCcE---------------EEEEECCCCCEEEEecCCCeE
Confidence 9999999986 77888888776654 699999999999999999975
No 28
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-31 Score=210.21 Aligned_cols=282 Identities=17% Similarity=0.210 Sum_probs=222.1
Q ss_pred ccCCCcEEEEEECCC-CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeee-cCCCccccc
Q 015290 29 LQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDY 106 (409)
Q Consensus 29 ~~h~~~v~~v~~~~~-~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~ 106 (409)
.+|.+.|..++|+|- |..||+|+.|+.|+||+...+. .+.+...+ .+|+
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~------------------------s~~ck~vld~~hk----- 61 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD------------------------SWTCKTVLDDGHK----- 61 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC------------------------cEEEEEeccccch-----
Confidence 348899999999997 8899999999999999988533 34455444 4677
Q ss_pred cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (409)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (409)
..|++++| +|.|++|++|+.|.++.||.-..++......+. -.+..+-...++.++.+++
T Consensus 62 -------rsVRsvAw--sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lE-----------GHEnEVK~Vaws~sG~~LA 121 (312)
T KOG0645|consen 62 -------RSVRSVAW--SPHGRYLASASFDATVVIWKKEDGEFECVATLE-----------GHENEVKCVAWSASGNYLA 121 (312)
T ss_pred -------heeeeeee--cCCCcEEEEeeccceEEEeecCCCceeEEeeee-----------ccccceeEEEEcCCCCEEE
Confidence 89999999 899999999999999999988766655443321 1234556677888889999
Q ss_pred cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCC--ceeeeeecCCCcC
Q 015290 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD--QCFNIVDMKPSNM 263 (409)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~--~~~~~~~~~~~~~ 263 (409)
..+. |..|-+|.+....+..|...+ +.|...|..+.|+|....|+++ .|++|++|+-.... .+..+ +
T Consensus 122 TCSR--DKSVWiWe~deddEfec~aVL-~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~t-------l 191 (312)
T KOG0645|consen 122 TCSR--DKSVWIWEIDEDDEFECIAVL-QEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQT-------L 191 (312)
T ss_pred EeeC--CCeEEEEEecCCCcEEEEeee-ccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEE-------e
Confidence 8887 999999999988888999887 9999999999999999999999 99999999876222 23444 7
Q ss_pred cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (409)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 343 (409)
.+|...|.+++|+|.| ..|++++.|++++||-....- . . .|...+..+.|. + ..||
T Consensus 192 ~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~~------~--~-------------~~sr~~Y~v~W~-~-~~Ia 247 (312)
T KOG0645|consen 192 DGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTDL------S--G-------------MHSRALYDVPWD-N-GVIA 247 (312)
T ss_pred cCccceEEEEEecCCC-ceEEEecCCcceEeeeeccCc------c--h-------------hcccceEeeeec-c-cceE
Confidence 8899999999999999 999999999999999865421 1 1 124578889998 4 4777
Q ss_pred Eee-cCeEEEEEccCC-Ccc-----eEEEecccCcccccccccCCCCccceeeEEEcCC-CCeEEEcccCCCC
Q 015290 344 SRD-YMNLKLWDIRMD-STP-----VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYRRDN 408 (409)
Q Consensus 344 sg~-~~~v~iwd~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~s~s~dg~i 408 (409)
+++ |+.|++|..... ..+ ...-..|+.. |.+++|.|. ..+|++|+.||.|
T Consensus 248 S~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~d---------------VNsV~w~p~~~~~L~s~~DDG~v 305 (312)
T KOG0645|consen 248 SGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVD---------------VNSVQWNPKVSNRLASGGDDGIV 305 (312)
T ss_pred eccCCCEEEEEEecCCCCCchHHHHHhhhcccccc---------------cceEEEcCCCCCceeecCCCceE
Confidence 775 699999986531 011 1122234443 369999995 6799999999986
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-32 Score=231.31 Aligned_cols=293 Identities=16% Similarity=0.225 Sum_probs=224.2
Q ss_pred ccccCCCcEEEEEECCCCC-EEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290 27 EELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (409)
Q Consensus 27 ~~~~h~~~v~~v~~~~~~~-~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (409)
+.+.|..+|.+.+|+|-.. .+|+|+.|-..++|++...... +.....|++... +-++.
T Consensus 173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~---~~~q~~lrh~~~--------------~~~~s---- 231 (524)
T KOG0273|consen 173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNI---GSTQLVLRHCIR--------------EGGKS---- 231 (524)
T ss_pred eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccc---cchhhhhhhhhh--------------hhccc----
Confidence 3445999999999999555 8999999999999998742110 111122221110 11111
Q ss_pred ccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (409)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (409)
...+..|++++| +.+|..|++|+.||.+++|+......... ....+.+++.-++..+.++
T Consensus 232 ----~~~nkdVT~L~W--n~~G~~LatG~~~G~~riw~~~G~l~~tl--------------~~HkgPI~slKWnk~G~yi 291 (524)
T KOG0273|consen 232 ----VPSNKDVTSLDW--NNDGTLLATGSEDGEARIWNKDGNLISTL--------------GQHKGPIFSLKWNKKGTYI 291 (524)
T ss_pred ----CCccCCcceEEe--cCCCCeEEEeecCcEEEEEecCchhhhhh--------------hccCCceEEEEEcCCCCEE
Confidence 112268999999 79999999999999999999876543322 2234667888899999999
Q ss_pred ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (409)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~ 264 (409)
.+++. |+++.+||..+ +...+.| .-|..+-..+.|-.+.. ++++ .|+.|+++.+. ...+..+ +.
T Consensus 292 lS~~v--D~ttilwd~~~---g~~~q~f-~~~s~~~lDVdW~~~~~-F~ts~td~~i~V~kv~-~~~P~~t-------~~ 356 (524)
T KOG0273|consen 292 LSGGV--DGTTILWDAHT---GTVKQQF-EFHSAPALDVDWQSNDE-FATSSTDGCIHVCKVG-EDRPVKT-------FI 356 (524)
T ss_pred EeccC--CccEEEEeccC---ceEEEee-eeccCCccceEEecCce-EeecCCCceEEEEEec-CCCccee-------ee
Confidence 98887 99999999976 3444444 56777767788876654 5665 99999999998 5556655 67
Q ss_pred CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC----
Q 015290 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ---- 340 (409)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~---- 340 (409)
+|.+.|.++.|+|.| .+|+++|.|++++||.+..... ..- +.+|...|..+.|+|+|.
T Consensus 357 GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~----~~~-------------l~~Hskei~t~~wsp~g~v~~n 418 (524)
T KOG0273|consen 357 GHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSNS----VHD-------------LQAHSKEIYTIKWSPTGPVTSN 418 (524)
T ss_pred cccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCcc----hhh-------------hhhhccceeeEeecCCCCccCC
Confidence 899999999999999 9999999999999999766432 122 345577899999999743
Q ss_pred -----EEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCCC
Q 015290 341 -----HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDNG 409 (409)
Q Consensus 341 -----~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i~ 409 (409)
.+++++ |++|++||+.. +.++..|..|..++ .+++|||+|++||+|+.||.|.
T Consensus 419 ~~~~~~l~sas~dstV~lwdv~~-gv~i~~f~kH~~pV---------------ysvafS~~g~ylAsGs~dg~V~ 477 (524)
T KOG0273|consen 419 PNMNLMLASASFDSTVKLWDVES-GVPIHTLMKHQEPV---------------YSVAFSPNGRYLASGSLDGCVH 477 (524)
T ss_pred CcCCceEEEeecCCeEEEEEccC-CceeEeeccCCCce---------------EEEEecCCCcEEEecCCCCeeE
Confidence 566664 69999999986 99999999999987 5999999999999999999873
No 30
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.9e-32 Score=245.65 Aligned_cols=280 Identities=19% Similarity=0.293 Sum_probs=226.1
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
|...|.++.|+++|+++++++.++.+++|+..+... +....+.+|.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------------~~~~~l~~h~--------- 203 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-------------------------NLLRELSGHT--------- 203 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------------------------hhhccccccc---------
Confidence 478999999999999999999999999999965540 1345568888
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEc-CCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (409)
..|.+++| +|+++++++++.|++|++||+ ..+...+.+..+. ..+.++.+++.+..+++++
T Consensus 204 ---~~v~~~~f--s~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~-------------~~v~~~~f~p~g~~i~Sgs 265 (456)
T KOG0266|consen 204 ---RGVSDVAF--SPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHS-------------TYVTSVAFSPDGNLLVSGS 265 (456)
T ss_pred ---cceeeeEE--CCCCcEEEEecCCceEEEeeccCCCeEEEEecCCC-------------CceEEEEecCCCCEEEEec
Confidence 89999999 899999999999999999999 4446666554322 2345666667777777777
Q ss_pred ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCc--eeeeeecCCCcCcCc
Q 015290 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDDL 266 (409)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~--~~~~~~~~~~~~~~~ 266 (409)
. |++|++||+++ +++++.+ .+|...|++++|++++++|+++ .|+.|++||+. .+. +... +.++
T Consensus 266 ~--D~tvriWd~~~---~~~~~~l-~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~-~~~~~~~~~-------~~~~ 331 (456)
T KOG0266|consen 266 D--DGTVRIWDVRT---GECVRKL-KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE-TGSKLCLKL-------LSGA 331 (456)
T ss_pred C--CCcEEEEeccC---CeEEEee-eccCCceEEEEECCCCCEEEEcCCCccEEEEECC-CCceeeeec-------ccCC
Confidence 7 99999999988 7888887 8999999999999999999999 99999999999 555 2333 3444
Q ss_pred cC--ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE
Q 015290 267 TE--VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (409)
Q Consensus 267 ~~--~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s 344 (409)
.. .++++.|+|++ .++++++.|+.+++||++.+.. ...+..|... ...+.+...++.++++++
T Consensus 332 ~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~~----~~~~~~~~~~----------~~~~~~~~~~~~~~~i~s 396 (456)
T KOG0266|consen 332 ENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGKS----VGTYTGHSNL----------VRCIFSPTLSTGGKLIYS 396 (456)
T ss_pred CCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCcc----eeeecccCCc----------ceeEecccccCCCCeEEE
Confidence 33 59999999999 9999999999999999998764 2444443211 024556666889999999
Q ss_pred eec-CeEEEEEccCCCcceEEEecc-cCcccccccccCCCCccceeeEEEcCCCCeEEEcc--cCCC
Q 015290 345 RDY-MNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YRRD 407 (409)
Q Consensus 345 g~~-~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s--~dg~ 407 (409)
|+. +.|++||+.+ +..+..+.+| ...+ ..++++|...++++++ .|+.
T Consensus 397 g~~d~~v~~~~~~s-~~~~~~l~~h~~~~~---------------~~~~~~~~~~~~~s~s~~~d~~ 447 (456)
T KOG0266|consen 397 GSEDGSVYVWDSSS-GGILQRLEGHSKAAV---------------SDLSSHPTENLIASSSFEGDGL 447 (456)
T ss_pred EeCCceEEEEeCCc-cchhhhhcCCCCCce---------------eccccCCCcCeeeecCcCCCce
Confidence 985 9999999986 8889999999 5544 5899999999999998 4544
No 31
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=4.5e-32 Score=221.92 Aligned_cols=300 Identities=19% Similarity=0.254 Sum_probs=228.6
Q ss_pred ceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCcee
Q 015290 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR 92 (409)
Q Consensus 13 ~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (409)
.-++.+.+-.+.+...+.|.+-|.++... ++.+++|++||.+++||..+..
T Consensus 86 eIEYv~~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~--------------------------- 136 (423)
T KOG0313|consen 86 EIEYVEAITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS--------------------------- 136 (423)
T ss_pred EEEEEEecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCce---------------------------
Confidence 45667777777788888899999999988 7899999999999999987654
Q ss_pred eeeeecCCCccccccccceeccceEEEEEEe-cCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccc-
Q 015290 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCA-APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE- 170 (409)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~-s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~- 170 (409)
...+.||. ++|.+++|.- ++....|++++.|.++++|.++.+........ .....
T Consensus 137 -~~~~~Ght------------~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~----------~~~GHk 193 (423)
T KOG0313|consen 137 -IKTIVGHT------------GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK----------VCRGHK 193 (423)
T ss_pred -EEEEecCC------------cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh----------Hhcccc
Confidence 56789999 8999999973 22334699999999999999987654322110 00111
Q ss_pred cCceeccCCCCCceeecccccccceeEEEecCC----------------------cccceeeeeeccccccceeEEEeCC
Q 015290 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGN----------------------SVHARCQKVYPHAHDFNINSISNNS 228 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------~~~~~~~~~~~~~~~~~v~~l~~~~ 228 (409)
..+-+....+++..+.+++. |..+++|+.+. .....++.++ .+|..+|.++.|++
T Consensus 194 ~~V~sVsv~~sgtr~~SgS~--D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl-~GHt~~Vs~V~w~d 270 (423)
T KOG0313|consen 194 RSVDSVSVDSSGTRFCSGSW--DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL-EGHTEPVSSVVWSD 270 (423)
T ss_pred cceeEEEecCCCCeEEeecc--cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe-cccccceeeEEEcC
Confidence 22223333556666777766 99999999331 1122234444 89999999999998
Q ss_pred CCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccc
Q 015290 229 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA 307 (409)
Q Consensus 229 ~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 307 (409)
...++++ .|.+|+.||+. .+.....+ . -...+.++..+|.. ++|++|+.|..|++||.|++.-
T Consensus 271 -~~v~yS~SwDHTIk~WDle-tg~~~~~~-------~-~~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~g----- 334 (423)
T KOG0313|consen 271 -ATVIYSVSWDHTIKVWDLE-TGGLKSTL-------T-TNKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDG----- 334 (423)
T ss_pred -CCceEeecccceEEEEEee-cccceeee-------e-cCcceeEeeccccc-ceeeecCCCCceeecCCCCCCC-----
Confidence 5567777 99999999999 55554431 2 33568999999988 9999999999999999998642
Q ss_pred ccccccccccCCcccccccccceeeeEeccCCCE-EEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCcc
Q 015290 308 RILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIF 385 (409)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (409)
......|.+|.+.|.++.|+|...+ |++|+ |+++++||+++...++..+.+|...+
T Consensus 335 ---------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKv------------- 392 (423)
T KOG0313|consen 335 ---------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKV------------- 392 (423)
T ss_pred ---------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceE-------------
Confidence 1123346788999999999998765 55677 59999999998556999999998865
Q ss_pred ceeeEEEcCCCCeEEEcccCCCC
Q 015290 386 DKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 386 ~v~~~~~spdg~~l~s~s~dg~i 408 (409)
+++.|. ++.+|++|+.|++|
T Consensus 393 --l~vdW~-~~~~IvSGGaD~~l 412 (423)
T KOG0313|consen 393 --LSVDWN-EGGLIVSGGADNKL 412 (423)
T ss_pred --EEEecc-CCceEEeccCcceE
Confidence 699998 66789999999876
No 32
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-32 Score=246.33 Aligned_cols=269 Identities=19% Similarity=0.330 Sum_probs=197.0
Q ss_pred cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCC-ccc------------------hhh-hhhh------cccc
Q 015290 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPN-QHI------------------SRS-ELEK------QMDF 83 (409)
Q Consensus 30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~-~~~------------------~~~-~~~~------~~~~ 83 (409)
.|.+.|++|.||+||+|||+|+.||.|+||.+...+.... .+. ..+ .... ....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 5999999999999999999999999999999876221000 000 000 0000 0000
Q ss_pred ccc-CCC------ceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccC
Q 015290 84 TST-SHP------EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD 156 (409)
Q Consensus 84 ~~~-~~~------~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 156 (409)
... ..| .-+++..|.||. +.|.+|.| | ...+|++++.|++||+|++...++++.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt------------~DILDlSW--S-Kn~fLLSSSMDKTVRLWh~~~~~CL~~---- 405 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHT------------ADILDLSW--S-KNNFLLSSSMDKTVRLWHPGRKECLKV---- 405 (712)
T ss_pred CccccCCCccccccccchhhhhccc------------hhheeccc--c-cCCeeEeccccccEEeecCCCcceeeE----
Confidence 000 011 235678889999 89999999 4 455999999999999999987755543
Q ss_pred CCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCC-CCCeEEE
Q 015290 157 HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVS 235 (409)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~ 235 (409)
| .|...|+|++|+| |.+++++
T Consensus 406 --------------------------------------------------------F--~HndfVTcVaFnPvDDryFiS 427 (712)
T KOG0283|consen 406 --------------------------------------------------------F--SHNDFVTCVAFNPVDDRYFIS 427 (712)
T ss_pred --------------------------------------------------------E--ecCCeeEEEEecccCCCcEee
Confidence 2 6999999999999 6789999
Q ss_pred e-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccc
Q 015290 236 A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA 314 (409)
Q Consensus 236 ~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 314 (409)
| -|+.|+||++. ..+... ...-...|++++|.|+| ++.+.|+.+|.+++|+.+..++.. .+..+.
T Consensus 428 GSLD~KvRiWsI~-d~~Vv~--------W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~----~~~I~~ 493 (712)
T KOG0283|consen 428 GSLDGKVRLWSIS-DKKVVD--------WNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVS----DFHIRL 493 (712)
T ss_pred cccccceEEeecC-cCeeEe--------ehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEE----eeeEee
Confidence 9 99999999998 454443 23344789999999999 999999999999999998865421 111100
Q ss_pred cccCCcccccccccceeeeEeccCC--CEEEEeecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEE
Q 015290 315 ESHGSKSFFTEIIASISDIKFANDG--QHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV 392 (409)
Q Consensus 315 ~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 392 (409)
.. ..-..|. .|+.+.|.|.. +.|+|..|..|||||.+. ..++..|+|....... ....|
T Consensus 494 ~~----~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ-------------~~Asf 554 (712)
T KOG0283|consen 494 HN----KKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQ-------------ISASF 554 (712)
T ss_pred cc----CccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCcc-------------eeeeE
Confidence 00 0001123 79999999854 377888889999999974 7888999987765321 47999
Q ss_pred cCCCCeEEEcccCCCC
Q 015290 393 SGDGLHFATGSYRRDN 408 (409)
Q Consensus 393 spdg~~l~s~s~dg~i 408 (409)
+.||++|+++++|..|
T Consensus 555 s~Dgk~IVs~seDs~V 570 (712)
T KOG0283|consen 555 SSDGKHIVSASEDSWV 570 (712)
T ss_pred ccCCCEEEEeecCceE
Confidence 9999999999998754
No 33
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.4e-30 Score=254.91 Aligned_cols=304 Identities=13% Similarity=0.120 Sum_probs=212.2
Q ss_pred cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (409)
...|.+.|.+++|+|+|++||+|+.|+.|+||+....... + .. ...+...+.++
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~---~---~~-------------~~~~~~~~~~~------- 532 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD---G---RD-------------IHYPVVELASR------- 532 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc---c---cc-------------cccceEEeccc-------
Confidence 4458999999999999999999999999999997642210 0 00 00011222332
Q ss_pred ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCC-CCceee
Q 015290 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFAHGY 186 (409)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 186 (409)
..|.+++|+| +++.+|++++.|++|++||+.+++.......+ .+.+..+.+++ +..+++
T Consensus 533 ------~~v~~l~~~~-~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H-------------~~~V~~l~~~p~~~~~L~ 592 (793)
T PLN00181 533 ------SKLSGICWNS-YIKSQVASSNFEGVVQVWDVARSQLVTEMKEH-------------EKRVWSIDYSSADPTLLA 592 (793)
T ss_pred ------CceeeEEecc-CCCCEEEEEeCCCeEEEEECCCCeEEEEecCC-------------CCCEEEEEEcCCCCCEEE
Confidence 5799999963 56789999999999999999987765544322 12334444443 445666
Q ss_pred cccccccceeEEEecCCcccceeeeeeccccccceeEEEeC-CCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (409)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~ 264 (409)
+++. |+.|++||+... .++..+ . +...+.++.|+ +++..|++| .|+.|++||++.....+.. +.
T Consensus 593 Sgs~--Dg~v~iWd~~~~---~~~~~~-~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~-------~~ 658 (793)
T PLN00181 593 SGSD--DGSVKLWSINQG---VSIGTI-K-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCT-------MI 658 (793)
T ss_pred EEcC--CCEEEEEECCCC---cEEEEE-e-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceE-------ec
Confidence 6665 899999999763 444444 3 33578999995 568999999 9999999999833333443 57
Q ss_pred CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE
Q 015290 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (409)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s 344 (409)
+|...|.++.|. ++ .+|++++.|+.|++||++.+.... .......+.+|...+..++|+|++++|++
T Consensus 659 ~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~-----------~~~~l~~~~gh~~~i~~v~~s~~~~~las 725 (793)
T PLN00181 659 GHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGI-----------NETPLHSFMGHTNVKNFVGLSVSDGYIAT 725 (793)
T ss_pred CCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCcccc-----------CCcceEEEcCCCCCeeEEEEcCCCCEEEE
Confidence 899999999997 55 799999999999999997632100 00112235567788999999999999999
Q ss_pred eec-CeEEEEEccCCCcceEEEecc-cCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 345 RDY-MNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 345 g~~-~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
|+. +.|++|+... ..++..+... ...+.... ..+....|.+++|+|++..|++|+.||+|
T Consensus 726 gs~D~~v~iw~~~~-~~~~~s~~~~~~~~~~~~~---~~~~~~~V~~v~ws~~~~~lva~~~dG~I 787 (793)
T PLN00181 726 GSETNEVFVYHKAF-PMPVLSYKFKTIDPVSGLE---VDDASQFISSVCWRGQSSTLVAANSTGNI 787 (793)
T ss_pred EeCCCEEEEEECCC-CCceEEEecccCCcccccc---cCCCCcEEEEEEEcCCCCeEEEecCCCcE
Confidence 985 9999999864 4444333211 11111000 00111124799999999999999999987
No 34
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.9e-32 Score=239.32 Aligned_cols=282 Identities=18% Similarity=0.224 Sum_probs=223.8
Q ss_pred cCCCcEEEEEE-CCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290 30 QDVDIVSAIEF-DKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (409)
Q Consensus 30 ~h~~~v~~v~~-~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (409)
+..+.|.+|+| .|+.++||++++.+.+++|+..+... ..+.||+
T Consensus 321 G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c----------------------------~ii~GH~------- 365 (775)
T KOG0319|consen 321 GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC----------------------------QIIPGHT------- 365 (775)
T ss_pred CCchhheeeeecCCccceEEEEeCCCceEEEecCCCce----------------------------EEEeCch-------
Confidence 35678999887 56789999999999999998887653 3789999
Q ss_pred cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeecc---CCCcccccccccccccCceeccCCCCCcee
Q 015290 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM---DHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (409)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (409)
+.|.++.. ..+|.+|++|+.|+++++|.++++........ .+...+.++.. ......++
T Consensus 366 -----e~vlSL~~--~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~-----------~~~~asff 427 (775)
T KOG0319|consen 366 -----EAVLSLDV--WSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAG-----------SKLGASFF 427 (775)
T ss_pred -----hheeeeee--cccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeee-----------cccCccEE
Confidence 89999994 36778999999999999999955433221110 11111111111 22333455
Q ss_pred ecccccccceeEEEecCCcccce--eee---eeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecC
Q 015290 186 YHLEWTENMATKIANVGNSVHAR--CQK---VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK 259 (409)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~--~~~---~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~ 259 (409)
++++. |.++++|++....+.. ... .....|+..|++++++|+.+.+++| .|.+.+||+++ ......+
T Consensus 428 vsvS~--D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-~~~l~~v---- 500 (775)
T KOG0319|consen 428 VSVSQ--DCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-QLRLLGV---- 500 (775)
T ss_pred EEecC--CceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc-CceEEEE----
Confidence 55554 9999999997622211 111 1126799999999999999999999 99999999999 7777777
Q ss_pred CCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC
Q 015290 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (409)
Q Consensus 260 ~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 339 (409)
+.+|...|.++.|+|.. +.++++|.|++|+||.+.+.+. .+. |.||...|..+.|-.+|
T Consensus 501 ---LsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fSC----lkT-------------~eGH~~aVlra~F~~~~ 559 (775)
T KOG0319|consen 501 ---LSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFSC----LKT-------------FEGHTSAVLRASFIRNG 559 (775)
T ss_pred ---eeCCccceEEEEecccc-ceeEeccCCceEEEEEecccee----eee-------------ecCccceeEeeeeeeCC
Confidence 79999999999999998 9999999999999999988652 344 45568899999999999
Q ss_pred CEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 340 QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 340 ~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
+.|++++ ||-|++|++++ +.++.++.+|++.+ ++++-+|++.+++||+.||.|
T Consensus 560 ~qliS~~adGliKlWnikt-~eC~~tlD~H~Drv---------------WaL~~~~~~~~~~tgg~Dg~i 613 (775)
T KOG0319|consen 560 KQLISAGADGLIKLWNIKT-NECEMTLDAHNDRV---------------WALSVSPLLDMFVTGGGDGRI 613 (775)
T ss_pred cEEEeccCCCcEEEEeccc-hhhhhhhhhcccee---------------EEEeecCccceeEecCCCeEE
Confidence 9999875 69999999997 89999999999987 899999999999999999976
No 35
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-32 Score=208.10 Aligned_cols=233 Identities=21% Similarity=0.363 Sum_probs=200.7
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
|.++|.++.|+-||+|.++|+.|.+|++|+...+. ++.++.+|.
T Consensus 16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~---------------------------liktYsghG--------- 59 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA---------------------------LIKTYSGHG--------- 59 (307)
T ss_pred cccceEEEEEccCCCEEEEcCCCceEEeecccccc---------------------------eeeeecCCC---------
Confidence 78999999999999999999999999999988776 578899999
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
..|..++- +.|...|++|+.|+.+.+||+.+|+..+.
T Consensus 60 ---~EVlD~~~--s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr-------------------------------------- 96 (307)
T KOG0316|consen 60 ---HEVLDAAL--SSDNSKFASCGGDKAVQVWDVNTGKVDRR-------------------------------------- 96 (307)
T ss_pred ---ceeeeccc--cccccccccCCCCceEEEEEcccCeeeee--------------------------------------
Confidence 78999998 78999999999999999999999876543
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCC-ceeeeeecCCCcCcCccC
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTE 268 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~ 268 (409)
+.+|.+.|+.++|+.+...+++| .|.++++||.+... +++++ +....+
T Consensus 97 -----------------------~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi-------ldea~D 146 (307)
T KOG0316|consen 97 -----------------------FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI-------LDEAKD 146 (307)
T ss_pred -----------------------cccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccch-------hhhhcC
Confidence 27899999999999999999999 99999999998432 34554 455667
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c
Q 015290 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (409)
Q Consensus 269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~ 347 (409)
.|.++..+. ..+++||.||+++.||+|.|.+.. -+- ..+|+++.|++||+.++.++ +
T Consensus 147 ~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~s----Dy~---------------g~pit~vs~s~d~nc~La~~l~ 204 (307)
T KOG0316|consen 147 GVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSS----DYF---------------GHPITSVSFSKDGNCSLASSLD 204 (307)
T ss_pred ceeEEEecc---cEEEeeccCCcEEEEEeecceeeh----hhc---------------CCcceeEEecCCCCEEEEeecc
Confidence 899998874 679999999999999999987521 111 35899999999999988887 5
Q ss_pred CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
+++++.|-.+ |+.++.+++|.+.-++ ..++++.....+++||+||.|
T Consensus 205 stlrLlDk~t-GklL~sYkGhkn~eyk-------------ldc~l~qsdthV~sgSEDG~V 251 (307)
T KOG0316|consen 205 STLRLLDKET-GKLLKSYKGHKNMEYK-------------LDCCLNQSDTHVFSGSEDGKV 251 (307)
T ss_pred ceeeecccch-hHHHHHhcccccceee-------------eeeeecccceeEEeccCCceE
Confidence 9999999987 9999999999987554 378888888899999999975
No 36
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.1e-30 Score=202.15 Aligned_cols=257 Identities=15% Similarity=0.320 Sum_probs=199.5
Q ss_pred ceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCcee
Q 015290 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR 92 (409)
Q Consensus 13 ~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (409)
.|.++..+.+ .|+..|.+++|+|.|++||+|+.|.++.||.-..+ +++
T Consensus 49 s~~ck~vld~-------~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~-------------------------efe 96 (312)
T KOG0645|consen 49 SWTCKTVLDD-------GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG-------------------------EFE 96 (312)
T ss_pred cEEEEEeccc-------cchheeeeeeecCCCcEEEEeeccceEEEeecCCC-------------------------cee
Confidence 3666665543 49999999999999999999999999999987654 567
Q ss_pred eeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCcee---eeeeccCCCccccccccccc
Q 015290 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV---KKIKEMDHFPFVSSENTLLA 169 (409)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~ 169 (409)
++..+.||+ ..|.+++| +++|.+||+|+.|+.|-||.+..+.. ...+..+
T Consensus 97 cv~~lEGHE------------nEVK~Vaw--s~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H------------- 149 (312)
T KOG0645|consen 97 CVATLEGHE------------NEVKCVAW--SASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH------------- 149 (312)
T ss_pred EEeeeeccc------------cceeEEEE--cCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc-------------
Confidence 899999999 89999999 89999999999999999999985432 2222211
Q ss_pred ccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccC
Q 015290 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (409)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~ 248 (409)
...+-.+.++|....+++++. |++|++|.-+....-.|.+++ .+|...|.+++|++.|..|+++ +|++++||....
T Consensus 150 tqDVK~V~WHPt~dlL~S~SY--DnTIk~~~~~~dddW~c~~tl-~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~ 226 (312)
T KOG0645|consen 150 TQDVKHVIWHPTEDLLFSCSY--DNTIKVYRDEDDDDWECVQTL-DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT 226 (312)
T ss_pred cccccEEEEcCCcceeEEecc--CCeEEEEeecCCCCeeEEEEe-cCccceEEEEEecCCCceEEEecCCcceEeeeecc
Confidence 122344556676667776665 999999998876677888887 8999999999999999999999 999999999761
Q ss_pred CCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (409)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (409)
.- -..|...++.+.|. + -.|++++.|+.|++|.....-. ......+. ..-..|..
T Consensus 227 ~~------------~~~~sr~~Y~v~W~-~--~~IaS~ggD~~i~lf~~s~~~d-~p~~~l~~---------~~~~aHe~ 281 (312)
T KOG0645|consen 227 DL------------SGMHSRALYDVPWD-N--GVIASGGGDDAIRLFKESDSPD-EPSWNLLA---------KKEGAHEV 281 (312)
T ss_pred Cc------------chhcccceEeeeec-c--cceEeccCCCEEEEEEecCCCC-CchHHHHH---------hhhccccc
Confidence 11 23377889999999 4 4899999999999997654211 00011111 01235677
Q ss_pred ceeeeEeccC-CCEEEEeec-CeEEEEEcc
Q 015290 329 SISDIKFAND-GQHLLSRDY-MNLKLWDIR 356 (409)
Q Consensus 329 ~i~~~~~s~~-g~~l~sg~~-~~v~iwd~~ 356 (409)
.|++++|.|. ...|++|+| |.|++|.+.
T Consensus 282 dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 282 DVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9999999995 578888876 999999874
No 37
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.7e-32 Score=225.14 Aligned_cols=244 Identities=16% Similarity=0.257 Sum_probs=202.3
Q ss_pred cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (409)
Q Consensus 30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (409)
.|+++|.++.|+++|.++++|+.+|.|++|+..-.. +..+++|..
T Consensus 136 aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn----------------------------Vk~~~ahh~------- 180 (464)
T KOG0284|consen 136 AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN----------------------------VKIIQAHHA------- 180 (464)
T ss_pred hhcccceeEEEccCCCEEEEcCCCceEEecccchhh----------------------------hHHhhHhhh-------
Confidence 399999999999999999999999999999976433 334455442
Q ss_pred ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (409)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (409)
..|++++| +|+...|++|+.||+|+|||....+.......+ .-.+.++.+++....+++++
T Consensus 181 ----eaIRdlaf--SpnDskF~t~SdDg~ikiWdf~~~kee~vL~GH-------------gwdVksvdWHP~kgLiasgs 241 (464)
T KOG0284|consen 181 ----EAIRDLAF--SPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGH-------------GWDVKSVDWHPTKGLIASGS 241 (464)
T ss_pred ----hhhheecc--CCCCceeEEecCCCeEEEEeccCCchhheeccC-------------CCCcceeccCCccceeEEcc
Confidence 69999999 788889999999999999999877665544321 22356778888888888888
Q ss_pred ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (409)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (409)
. |..|++||..+ +.|+.++ .+|...|..+.|+|++++|+++ .|..++++|++ .-+.+.+ +.+|..
T Consensus 242 k--DnlVKlWDprS---g~cl~tl-h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR-~mkEl~~-------~r~Hkk 307 (464)
T KOG0284|consen 242 K--DNLVKLWDPRS---GSCLATL-HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR-TMKELFT-------YRGHKK 307 (464)
T ss_pred C--CceeEeecCCC---cchhhhh-hhccceEEEEEEcCCCCeeEEccCCceEEEEehh-HhHHHHH-------hhcchh
Confidence 6 77999999987 7788876 8999999999999999999999 99999999999 4444444 689999
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c
Q 015290 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (409)
Q Consensus 269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~ 347 (409)
.++++.|+|-.+.+|.+|+.||.|..|.+...+. +.... .+|...|++++|+|-|.+|++|+ |
T Consensus 308 dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p----~~~i~------------~AHd~~iwsl~~hPlGhil~tgsnd 371 (464)
T KOG0284|consen 308 DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP----LGEIP------------PAHDGEIWSLAYHPLGHILATGSND 371 (464)
T ss_pred hheeeccccccccceeeccCCCceEEEecccccc----ccCCC------------cccccceeeeeccccceeEeecCCC
Confidence 9999999999888999999999999999874332 11111 35678999999999999999998 4
Q ss_pred CeEEEEEccC
Q 015290 348 MNLKLWDIRM 357 (409)
Q Consensus 348 ~~v~iwd~~~ 357 (409)
.++++|.-..
T Consensus 372 ~t~rfw~r~r 381 (464)
T KOG0284|consen 372 RTVRFWTRNR 381 (464)
T ss_pred cceeeeccCC
Confidence 9999998643
No 38
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-31 Score=231.09 Aligned_cols=236 Identities=17% Similarity=0.248 Sum_probs=204.6
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
+.+.|.++.|+|...+++++-.+|.|.||+.+++.. +..+.-.+
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm---------------------------VksfeV~~--------- 55 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM---------------------------VKSFEVSE--------- 55 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEeccccee---------------------------eeeeeecc---------
Confidence 789999999999999999999999999999998763 45555555
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
-+|++..|. ...+.+++|+.|..|++|+.++++....
T Consensus 56 ---~PvRa~kfi--aRknWiv~GsDD~~IrVfnynt~ekV~~-------------------------------------- 92 (794)
T KOG0276|consen 56 ---VPVRAAKFI--ARKNWIVTGSDDMQIRVFNYNTGEKVKT-------------------------------------- 92 (794)
T ss_pred ---cchhhheee--eccceEEEecCCceEEEEecccceeeEE--------------------------------------
Confidence 689999996 5667999999999999999998765443
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (409)
| .+|.+.|++++.||...+++++ +|-+|++||.+..-.+.++ +.+|...
T Consensus 93 ----------------------F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qt-------feGH~Hy 142 (794)
T KOG0276|consen 93 ----------------------F-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQT-------FEGHEHY 142 (794)
T ss_pred ----------------------e-eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeE-------EcCcceE
Confidence 2 7899999999999999999999 9999999999943344555 8999999
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC--CEEEEeec
Q 015290 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRDY 347 (409)
Q Consensus 270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~sg~~ 347 (409)
|.+++|+|..++.||+++.|++|++|.+.+... .-++.+|...|+++.+-+-| .||++|+|
T Consensus 143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~-----------------nfTl~gHekGVN~Vdyy~~gdkpylIsgaD 205 (794)
T KOG0276|consen 143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP-----------------NFTLEGHEKGVNCVDYYTGGDKPYLISGAD 205 (794)
T ss_pred EEEEEecCCCccceeeeeccccEEEEEcCCCCC-----------------ceeeeccccCcceEEeccCCCcceEEecCC
Confidence 999999999889999999999999999876432 22245678899999998865 59999986
Q ss_pred -CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 348 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
..|+|||.++ ..+++++.||...+ ..+.|+|.-..++|||+||+|
T Consensus 206 D~tiKvWDyQt-k~CV~TLeGHt~Nv---------------s~v~fhp~lpiiisgsEDGTv 251 (794)
T KOG0276|consen 206 DLTIKVWDYQT-KSCVQTLEGHTNNV---------------SFVFFHPELPIIISGSEDGTV 251 (794)
T ss_pred CceEEEeecch-HHHHHHhhcccccc---------------eEEEecCCCcEEEEecCCccE
Confidence 9999999997 89999999999987 589999999999999999986
No 39
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-31 Score=237.07 Aligned_cols=284 Identities=17% Similarity=0.244 Sum_probs=232.7
Q ss_pred CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (409)
+..|..++|+|...+++++-..|.|++||..-+. ++..|..|.
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t---------------------------li~rFdeHd---------- 51 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT---------------------------LIDRFDEHD---------- 51 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhh---------------------------HHhhhhccC----------
Confidence 5789999999999999999999999999998665 356788898
Q ss_pred eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (409)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (409)
++|+.|.|| |.+.+|++|+.|..|++|+..+.++......+. ..+.++.+++.-.++.+++.
T Consensus 52 --GpVRgv~FH--~~qplFVSGGDDykIkVWnYk~rrclftL~GHl-------------DYVRt~~FHheyPWIlSASD- 113 (1202)
T KOG0292|consen 52 --GPVRGVDFH--PTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHL-------------DYVRTVFFHHEYPWILSASD- 113 (1202)
T ss_pred --Cccceeeec--CCCCeEEecCCccEEEEEecccceehhhhcccc-------------ceeEEeeccCCCceEEEccC-
Confidence 999999995 788899999999999999999988776554332 34667778888888888876
Q ss_pred ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeee---------------
Q 015290 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI--------------- 255 (409)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~--------------- 255 (409)
|.+|++|+.++ ..|+..+ .+|...|.|.+|+|....++++ -|.+|++||+.. -.....
T Consensus 114 -DQTIrIWNwqs---r~~iavl-tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisG-LRkk~~~pg~~e~~~~~~~~~ 187 (1202)
T KOG0292|consen 114 -DQTIRIWNWQS---RKCIAVL-TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISG-LRKKNKAPGSLEDQMRGQQGN 187 (1202)
T ss_pred -CCeEEEEeccC---CceEEEE-ecCceEEEeeccCCccceEEEecccceEEEEeecc-hhccCCCCCCchhhhhccccc
Confidence 88999999987 6788777 8999999999999999999999 999999999862 100000
Q ss_pred ---e---e-cCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290 256 ---V---D-MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (409)
Q Consensus 256 ---~---~-~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (409)
+ + +-..-+.+|...|+.++|+|.- .++++|+.|..|++|.+... +.|+. .+..+|..
T Consensus 188 ~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnet-------KaWEv--------DtcrgH~n 251 (1202)
T KOG0292|consen 188 SDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNET-------KAWEV--------DTCRGHYN 251 (1202)
T ss_pred hhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCCcceeeEEEeccc-------cceee--------hhhhcccC
Confidence 0 0 0001267899999999999998 99999999999999998764 33433 23567889
Q ss_pred ceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290 329 SISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD 407 (409)
Q Consensus 329 ~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~ 407 (409)
.|.++-|+|...++++.++ ++|++||+.+ .+.++++......- +.++-+|..+++|.|-+.|.
T Consensus 252 nVssvlfhp~q~lIlSnsEDksirVwDm~k-Rt~v~tfrrendRF---------------W~laahP~lNLfAAgHDsGm 315 (1202)
T KOG0292|consen 252 NVSSVLFHPHQDLILSNSEDKSIRVWDMTK-RTSVQTFRRENDRF---------------WILAAHPELNLFAAGHDSGM 315 (1202)
T ss_pred CcceEEecCccceeEecCCCccEEEEeccc-ccceeeeeccCCeE---------------EEEEecCCcceeeeecCCce
Confidence 9999999999999999874 9999999986 78888887555432 78999999999988877765
Q ss_pred C
Q 015290 408 N 408 (409)
Q Consensus 408 i 408 (409)
+
T Consensus 316 ~ 316 (1202)
T KOG0292|consen 316 I 316 (1202)
T ss_pred E
Confidence 3
No 40
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-31 Score=215.24 Aligned_cols=290 Identities=15% Similarity=0.232 Sum_probs=236.5
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
.+..+-|..|+|||+||++|+.||-|.+|+..+++. ++.++ |..-..|.-+.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKl-------rKDLk------------YQAqd~fMMmd--------- 263 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKL-------RKDLK------------YQAQDNFMMMD--------- 263 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchh-------hhhhh------------hhhhcceeecc---------
Confidence 456788999999999999999999999999998874 44442 22333455555
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
++|.|+.| +.|...+++|+.||.|++|.+.+|.+.+.+.-.+...++|+.|+..+..+++..+
T Consensus 264 ---~aVlci~F--SRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sf------------ 326 (508)
T KOG0275|consen 264 ---DAVLCISF--SRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASF------------ 326 (508)
T ss_pred ---cceEEEee--cccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccc------------
Confidence 89999999 8999999999999999999999999988877667777888877776666665554
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (409)
|.++|+--+.. +++++.| .+|...|+...|.++|..++++ .||+|++|+.. +.+++.++. ..+...+
T Consensus 327 --D~tvRiHGlKS---GK~LKEf-rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~K-tteC~~Tfk-----~~~~d~~ 394 (508)
T KOG0275|consen 327 --DQTVRIHGLKS---GKCLKEF-RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGK-TTECLSTFK-----PLGTDYP 394 (508)
T ss_pred --cceEEEecccc---chhHHHh-cCccccccceEEcCCCCeEEEecCCccEEEecCc-chhhhhhcc-----CCCCccc
Confidence 77888877765 7888887 9999999999999999999999 99999999999 777877742 2345567
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cC
Q 015290 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (409)
Q Consensus 270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~ 348 (409)
|.++..-|.++..++.+...+++.|.++...- ++.+..... -.+...+.+.||.|.++.+.+ |+
T Consensus 395 vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv-----VrsfsSGkR----------EgGdFi~~~lSpkGewiYcigED~ 459 (508)
T KOG0275|consen 395 VNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV-----VRSFSSGKR----------EGGDFINAILSPKGEWIYCIGEDG 459 (508)
T ss_pred ceeEEEcCCCCceEEEEcCCCeEEEEeccceE-----EeeeccCCc----------cCCceEEEEecCCCcEEEEEccCc
Confidence 89999999888899999999999999987642 233322000 034677789999999999876 59
Q ss_pred eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 349 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
.++.+.+.+ |+.-..+..|+..+ ..++-+|..+.||+-++||.+
T Consensus 460 vlYCF~~~s-G~LE~tl~VhEkdv---------------IGl~HHPHqNllAsYsEDgll 503 (508)
T KOG0275|consen 460 VLYCFSVLS-GKLERTLPVHEKDV---------------IGLTHHPHQNLLASYSEDGLL 503 (508)
T ss_pred EEEEEEeec-Cceeeeeecccccc---------------cccccCcccchhhhhcccchh
Confidence 999999986 89989999998765 589999999999999999964
No 41
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=2.3e-31 Score=216.24 Aligned_cols=245 Identities=17% Similarity=0.243 Sum_probs=201.8
Q ss_pred CCceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCccccccccc
Q 015290 88 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL 167 (409)
Q Consensus 88 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 167 (409)
++.|++.+.+.+|. +.|.|+++ .|..+.|++++.|++|+|||+.+++++.....+... +..+.+
T Consensus 138 HapwKl~rVi~gHl------------gWVr~vav--dP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~-vr~vav- 201 (460)
T KOG0285|consen 138 HAPWKLYRVISGHL------------GWVRSVAV--DPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIET-VRGVAV- 201 (460)
T ss_pred cCcceehhhhhhcc------------ceEEEEee--CCCceeEEecCCCceeEEEEcccCeEEEeecchhhe-eeeeee-
Confidence 45788899999999 99999999 788999999999999999999999887765432211 111222
Q ss_pred ccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEc
Q 015290 168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL 246 (409)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~ 246 (409)
+.--.++.++.. |+.|+.||++. .+.++.| .+|-..|.|++.+|.-..|++| .|.++++||+
T Consensus 202 -----------S~rHpYlFs~ge--dk~VKCwDLe~---nkvIR~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDi 264 (460)
T KOG0285|consen 202 -----------SKRHPYLFSAGE--DKQVKCWDLEY---NKVIRHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDI 264 (460)
T ss_pred -----------cccCceEEEecC--CCeeEEEechh---hhhHHHh-ccccceeEEEeccccceeEEecCCcceEEEeee
Confidence 222234444433 88999999987 6777877 8999999999999999999999 9999999999
Q ss_pred cCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccc
Q 015290 247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 326 (409)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (409)
+ ++..+.+ +.+|...|.++.+.|-. ..+++||.|++|++||++.++.. ..+ ..|
T Consensus 265 R-tr~~V~~-------l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~----~tl-------------t~h 318 (460)
T KOG0285|consen 265 R-TRASVHV-------LSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTM----ITL-------------THH 318 (460)
T ss_pred c-ccceEEE-------ecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCcee----Eee-------------ecc
Confidence 9 6777766 79999999999999988 78999999999999999998642 222 334
Q ss_pred ccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290 327 IASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRR 406 (409)
Q Consensus 327 ~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg 406 (409)
...+.+++.+|....+|+++...|+-|++.. +..++.+.+|...+ .+++...|| ++++|+++|
T Consensus 319 kksvral~lhP~e~~fASas~dnik~w~~p~-g~f~~nlsgh~~ii---------------ntl~~nsD~-v~~~G~dng 381 (460)
T KOG0285|consen 319 KKSVRALCLHPKENLFASASPDNIKQWKLPE-GEFLQNLSGHNAII---------------NTLSVNSDG-VLVSGGDNG 381 (460)
T ss_pred cceeeEEecCCchhhhhccCCccceeccCCc-cchhhcccccccee---------------eeeeeccCc-eEEEcCCce
Confidence 6789999999999999999889999999985 88888999999876 478888777 677888888
Q ss_pred CC
Q 015290 407 DN 408 (409)
Q Consensus 407 ~i 408 (409)
.+
T Consensus 382 ~~ 383 (460)
T KOG0285|consen 382 SI 383 (460)
T ss_pred EE
Confidence 65
No 42
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=6.4e-32 Score=218.79 Aligned_cols=266 Identities=15% Similarity=0.247 Sum_probs=205.3
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
..+.|.|+.+. ...+++|..|++|+|||..+.. ++..+.||+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~---------------------------c~~~L~GHt--------- 237 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLE---------------------------CLKILTGHT--------- 237 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHH---------------------------HHHhhhcCC---------
Confidence 46789999986 5578999999999999988655 567789999
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
+.|.|+.| +.+.+++|+.|.+|++||++++++....-.+... +..+. -.++ ++.+.+
T Consensus 238 ---GSVLCLqy----d~rviisGSSDsTvrvWDv~tge~l~tlihHcea-VLhlr--f~ng------------~mvtcS- 294 (499)
T KOG0281|consen 238 ---GSVLCLQY----DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEA-VLHLR--FSNG------------YMVTCS- 294 (499)
T ss_pred ---CcEEeeec----cceEEEecCCCceEEEEeccCCchhhHHhhhcce-eEEEE--EeCC------------EEEEec-
Confidence 99999999 5569999999999999999999887654433221 11110 1112 222222
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (409)
.|.++.+||+.......+.+.+ .+|...|+.+.|+ .++++++ .|.+|++|++. +...+++ +.+|...
T Consensus 295 -kDrsiaVWdm~sps~it~rrVL-vGHrAaVNvVdfd--~kyIVsASgDRTikvW~~s-t~efvRt-------l~gHkRG 362 (499)
T KOG0281|consen 295 -KDRSIAVWDMASPTDITLRRVL-VGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTS-TCEFVRT-------LNGHKRG 362 (499)
T ss_pred -CCceeEEEeccCchHHHHHHHH-hhhhhheeeeccc--cceEEEecCCceEEEEecc-ceeeehh-------hhccccc
Confidence 3889999999988877777766 8999999999996 5699999 99999999999 7888877 7899999
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cC
Q 015290 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (409)
Q Consensus 270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~ 348 (409)
|-|+.+. + +++++||.|.+|++||+..|.. ++.+++ |..-|.++.|. .+.+++|. ||
T Consensus 363 IAClQYr--~-rlvVSGSSDntIRlwdi~~G~c----LRvLeG-------------HEeLvRciRFd--~krIVSGaYDG 420 (499)
T KOG0281|consen 363 IACLQYR--D-RLVVSGSSDNTIRLWDIECGAC----LRVLEG-------------HEELVRCIRFD--NKRIVSGAYDG 420 (499)
T ss_pred ceehhcc--C-eEEEecCCCceEEEEeccccHH----HHHHhc-------------hHHhhhheeec--Cceeeeccccc
Confidence 9998875 5 8999999999999999999874 456655 46789999997 46888887 59
Q ss_pred eEEEEEccCCCc--------ceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 349 NLKLWDIRMDST--------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 349 ~v~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
.|++||+..... ++..+..|.+.+ +.+.| |...+++++.|.+|
T Consensus 421 kikvWdl~aaldpra~~~~~Cl~~lv~hsgRV---------------FrLQF--D~fqIvsssHddtI 471 (499)
T KOG0281|consen 421 KIKVWDLQAALDPRAPASTLCLRTLVEHSGRV---------------FRLQF--DEFQIISSSHDDTI 471 (499)
T ss_pred eEEEEecccccCCcccccchHHHhhhhcccee---------------EEEee--cceEEEeccCCCeE
Confidence 999999975222 223333444433 47776 56778888888765
No 43
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=5.7e-30 Score=199.66 Aligned_cols=276 Identities=16% Similarity=0.221 Sum_probs=214.9
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (409)
Q Consensus 29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (409)
.+|..+|.+|+|+.+|..||+|+.|+++++|+++..+.. .-....+|.
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-------------------------~~~~~~gh~------- 64 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-------------------------KELVYRGHT------- 64 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-------------------------hhhcccCCC-------
Confidence 448899999999999999999999999999999866421 112467888
Q ss_pred cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (409)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (409)
+.|-.++|.| +....|++++.|++|++||++.+++..... ..+.-+...++|++.+++.+
T Consensus 65 -----~svdql~w~~-~~~d~~atas~dk~ir~wd~r~~k~~~~i~--------------~~~eni~i~wsp~g~~~~~~ 124 (313)
T KOG1407|consen 65 -----DSVDQLCWDP-KHPDLFATASGDKTIRIWDIRSGKCTARIE--------------TKGENINITWSPDGEYIAVG 124 (313)
T ss_pred -----cchhhheeCC-CCCcceEEecCCceEEEEEeccCcEEEEee--------------ccCcceEEEEcCCCCEEEEe
Confidence 8899999986 667799999999999999999988765543 23444556667777777776
Q ss_pred cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (409)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (409)
.. +..|.+.|..+. +.... ......++.+.|+-++.+++.. ..|.|.|.... .-+++.. +..|.
T Consensus 125 ~k--dD~it~id~r~~---~~~~~--~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp-sLkpv~s-------i~AH~ 189 (313)
T KOG1407|consen 125 NK--DDRITFIDARTY---KIVNE--EQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP-SLKPVQS-------IKAHP 189 (313)
T ss_pred cC--cccEEEEEeccc---ceeeh--hcccceeeeeeecCCCCEEEEecCCceEEEEecc-ccccccc-------cccCC
Confidence 65 777777777542 22221 2334567788998777777666 78999999887 5555554 78899
Q ss_pred CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (409)
Q Consensus 268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~ 347 (409)
....++.|+|+| ++||+|+.|-.+.+||+..-- |. +.+.. +.-+|..+.||.||++||+|++
T Consensus 190 snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELi-C~---R~isR-------------ldwpVRTlSFS~dg~~lASaSE 251 (313)
T KOG1407|consen 190 SNCICIEFDPDG-RYFATGSADALVSLWDVDELI-CE---RCISR-------------LDWPVRTLSFSHDGRMLASASE 251 (313)
T ss_pred cceEEEEECCCC-ceEeeccccceeeccChhHhh-hh---eeecc-------------ccCceEEEEeccCcceeeccCc
Confidence 999999999999 999999999999999987632 32 22222 2568999999999999999985
Q ss_pred -CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290 348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRR 406 (409)
Q Consensus 348 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg 406 (409)
..|-|=++.+ |..+..++-.... +.++|+|...+||.+..|.
T Consensus 252 Dh~IDIA~vet-Gd~~~eI~~~~~t----------------~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 252 DHFIDIAEVET-GDRVWEIPCEGPT----------------FTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred cceEEeEeccc-CCeEEEeeccCCc----------------eeEEecCCCceeeEEecCC
Confidence 9999999987 7777777643333 5999999999999888775
No 44
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1e-30 Score=212.93 Aligned_cols=243 Identities=16% Similarity=0.248 Sum_probs=202.5
Q ss_pred cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (409)
..+|.+.|.+|+|+..|++||+++.|-.+++||.++. +++++.+.+|+
T Consensus 146 LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~--------------------------~~c~ks~~gh~------ 193 (406)
T KOG0295|consen 146 LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF--------------------------FRCIKSLIGHE------ 193 (406)
T ss_pred hhccccceeEEEEecCccEEEecCCccchhheeHHHH--------------------------HHHHHHhcCcc------
Confidence 4459999999999999999999999988999999863 23566778898
Q ss_pred ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (409)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
..|.++.|. |.|.++++++.|.+|+.|++.++-++..+..+ ..-+....-+.++.++++
T Consensus 194 ------h~vS~V~f~--P~gd~ilS~srD~tik~We~~tg~cv~t~~~h-------------~ewvr~v~v~~DGti~As 252 (406)
T KOG0295|consen 194 ------HGVSSVFFL--PLGDHILSCSRDNTIKAWECDTGYCVKTFPGH-------------SEWVRMVRVNQDGTIIAS 252 (406)
T ss_pred ------cceeeEEEE--ecCCeeeecccccceeEEecccceeEEeccCc-------------hHhEEEEEecCCeeEEEe
Confidence 899999995 67899999999999999999999887765422 123333445667778887
Q ss_pred ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC---------------CCeEEEe-cCCeEEEEEccCCCc
Q 015290 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---------------CETFVSA-DDLRINLWNLEISDQ 251 (409)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---------------~~~l~~~-~d~~i~lwd~~~~~~ 251 (409)
++. +.++++|-..+ .+|...+ ..|+.+|.|++|.|. +++++++ .|++|++||+. .+.
T Consensus 253 ~s~--dqtl~vW~~~t---~~~k~~l-R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~-tg~ 325 (406)
T KOG0295|consen 253 CSN--DQTLRVWVVAT---KQCKAEL-REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS-TGM 325 (406)
T ss_pred cCC--CceEEEEEecc---chhhhhh-hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc-CCe
Confidence 776 88999999977 4555555 889999999999652 2588888 99999999999 778
Q ss_pred eeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccccee
Q 015290 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (409)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 331 (409)
++.+ +.+|..+|..++|+|.| +||+++..|+++++||+++.+. .+.++. |..-++
T Consensus 326 cL~t-------L~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~c----mk~~~a-------------h~hfvt 380 (406)
T KOG0295|consen 326 CLFT-------LVGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQC----MKTLEA-------------HEHFVT 380 (406)
T ss_pred EEEE-------EecccceeeeeEEcCCC-eEEEEEecCCcEEEEEecccee----eeccCC-------------CcceeE
Confidence 8877 79999999999999999 9999999999999999998763 244444 356899
Q ss_pred eeEeccCCCEEEEee-cCeEEEEEc
Q 015290 332 DIKFANDGQHLLSRD-YMNLKLWDI 355 (409)
Q Consensus 332 ~~~~s~~g~~l~sg~-~~~v~iwd~ 355 (409)
+++|+.+..|+++|+ |..+++|..
T Consensus 381 ~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 381 SLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEecCCCCceEEeccccceeeeeec
Confidence 999999999999998 599999974
No 45
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.5e-31 Score=203.79 Aligned_cols=238 Identities=18% Similarity=0.284 Sum_probs=195.1
Q ss_pred CCcEEEEEECCC-CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 32 VDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 32 ~~~v~~v~~~~~-~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
.+.+..++|+++ ...+++++.||+++|||..-.. .++..++.|.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s--------------------------~Pi~~~kEH~--------- 104 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS--------------------------KPIHKFKEHK--------- 104 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCC--------------------------cchhHHHhhh---------
Confidence 678999999994 4578888999999999954333 2677889999
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
..|.++.|.+ .+...+++++.|++||+|+...++...
T Consensus 105 ---~EV~Svdwn~-~~r~~~ltsSWD~TiKLW~~~r~~Sv~--------------------------------------- 141 (311)
T KOG0277|consen 105 ---REVYSVDWNT-VRRRIFLTSSWDGTIKLWDPNRPNSVQ--------------------------------------- 141 (311)
T ss_pred ---hheEEecccc-ccceeEEeeccCCceEeecCCCCcceE---------------------------------------
Confidence 8999999963 567788899999999999987654333
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (409)
+| .+|...|...+|+|. ++.++++ .|+.+++||++..++.+. ++.|..
T Consensus 142 ---------------------Tf-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~--------i~ah~~ 191 (311)
T KOG0277|consen 142 ---------------------TF-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS--------IEAHNS 191 (311)
T ss_pred ---------------------ee-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE--------EEeccc
Confidence 33 789999999999996 5777888 999999999997766554 477888
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC-CEEEEee-
Q 015290 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD- 346 (409)
Q Consensus 269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~sg~- 346 (409)
.+.++.|+.-.++++++|+.|+.|+.||+++-+.. ...+.+|.-.|+.++|||.. ..||+++
T Consensus 192 Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p----------------l~eL~gh~~AVRkvk~Sph~~~lLaSasY 255 (311)
T KOG0277|consen 192 EILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP----------------LFELNGHGLAVRKVKFSPHHASLLASASY 255 (311)
T ss_pred eeEeecccccCCcEEEecCCCceEEEEehhhcccc----------------ceeecCCceEEEEEecCcchhhHhhhccc
Confidence 99999999888799999999999999999985421 12235678899999999975 5778888
Q ss_pred cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcC-CCCeEEEcccCCCC
Q 015290 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYRRDN 408 (409)
Q Consensus 347 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~s~s~dg~i 408 (409)
|-++||||...+...+.++..|...+ ..+.||+ ++.++|+++.|+.+
T Consensus 256 DmT~riw~~~~~ds~~e~~~~HtEFv---------------~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 256 DMTVRIWDPERQDSAIETVDHHTEFV---------------CGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred cceEEecccccchhhhhhhhccceEE---------------eccccccccCceeeecccccce
Confidence 59999999986567777787777765 5889997 67799999999875
No 46
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4.6e-30 Score=226.94 Aligned_cols=304 Identities=16% Similarity=0.186 Sum_probs=214.9
Q ss_pred cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (409)
Q Consensus 30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (409)
.|+.+|.-++|+|.+.++|+|+.||.|+|||+..+. +...|+||.
T Consensus 103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~---------------------------~th~fkG~g-------- 147 (775)
T KOG0319|consen 103 IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY---------------------------CTHSFKGHG-------- 147 (775)
T ss_pred ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE---------------------------EEEEecCCC--------
Confidence 399999999999999999999999999999999776 578899999
Q ss_pred ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCcee-eeeeccCCCcccccccccccccCceec------------
Q 015290 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNE------------ 176 (409)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 176 (409)
+.|.++.|+|.+....|+++..|+++++||+..+.. ......+. ..+.++.+.......++.
T Consensus 148 ----GvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~-S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~ 222 (775)
T KOG0319|consen 148 ----GVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHK-SAVTSLAFSEDSLELLSVGRDKVIIVWDLV 222 (775)
T ss_pred ----ceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhh-hheeeeeeccCCceEEEeccCcEEEEeehh
Confidence 999999998877777899999999999999985432 11000000 000111100000000000
Q ss_pred -----------------cC-----CCCCceeecccccccce---------------------------------------
Q 015290 177 -----------------HN-----PPSFAHGYHLEWTENMA--------------------------------------- 195 (409)
Q Consensus 177 -----------------~~-----~~~~~~~~~~~~~~~~~--------------------------------------- 195 (409)
.. ...+.++.+.+ ..|.
T Consensus 223 ~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG--~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vt 300 (775)
T KOG0319|consen 223 QYKKLKTLPLYESLESVVRLREELGGKGEYIITAG--GSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVT 300 (775)
T ss_pred hhhhhheechhhheeeEEEechhcCCcceEEEEec--CCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEE
Confidence 00 00001111111 1222
Q ss_pred -----------------------------------------------eEEEecCCcccceeeeeeccccccceeEEEeCC
Q 015290 196 -----------------------------------------------TKIANVGNSVHARCQKVYPHAHDFNINSISNNS 228 (409)
Q Consensus 196 -----------------------------------------------i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 228 (409)
+|+++..+. .|. +..+|...|.++....
T Consensus 301 aeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~---~c~--ii~GH~e~vlSL~~~~ 375 (775)
T KOG0319|consen 301 AEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS---YCQ--IIPGHTEAVLSLDVWS 375 (775)
T ss_pred ccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCC---ceE--EEeCchhheeeeeecc
Confidence 233322221 111 2378999999999777
Q ss_pred CCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccc
Q 015290 229 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA 307 (409)
Q Consensus 229 ~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 307 (409)
+|-+|++| .|.++++|.++ .+..... . .....+|...|.+++++..+..+|+++|.|+++++|++...+.... .
T Consensus 376 ~g~llat~sKD~svilWr~~-~~~~~~~-~--~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-~ 450 (775)
T KOG0319|consen 376 SGDLLATGSKDKSVILWRLN-NNCSKSL-C--VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-P 450 (775)
T ss_pred cCcEEEEecCCceEEEEEec-CCcchhh-h--hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc-c
Confidence 78899999 99999999985 2221111 0 0126789999999999998888999999999999999987432111 1
Q ss_pred ccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccc
Q 015290 308 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFD 386 (409)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (409)
-.+. .+.....|...|++++.+|+.+++|||+ |++.+||++. +...+.++.+|...+
T Consensus 451 ~~~~-------~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-~~~l~~vLsGH~RGv-------------- 508 (775)
T KOG0319|consen 451 IVLT-------CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-QLRLLGVLSGHTRGV-------------- 508 (775)
T ss_pred ceeh-------hhHHHHhhcccccceEecCCCceEEecccccceeeeccc-CceEEEEeeCCccce--------------
Confidence 1111 1223457889999999999999999998 5999999998 489999999999986
Q ss_pred eeeEEEcCCCCeEEEcccCCCC
Q 015290 387 KFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 387 v~~~~~spdg~~l~s~s~dg~i 408 (409)
+++.|+|..+.|||+|.|++|
T Consensus 509 -w~V~Fs~~dq~laT~SgD~Tv 529 (775)
T KOG0319|consen 509 -WCVSFSKNDQLLATCSGDKTV 529 (775)
T ss_pred -EEEEeccccceeEeccCCceE
Confidence 799999999999999999986
No 47
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=2.6e-30 Score=219.60 Aligned_cols=265 Identities=19% Similarity=0.287 Sum_probs=198.2
Q ss_pred CCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc
Q 015290 25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (409)
Q Consensus 25 ~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (409)
.+....|+..|+++++.|.|..|++|+.|.+|++||+++.... .+.++.+.-...
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas--------------------~~~fr~l~P~E~----- 214 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS--------------------MRSFRQLQPCET----- 214 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEeccccccc--------------------chhhhccCcccc-----
Confidence 3444557899999999999999999999999999999976641 111222222233
Q ss_pred cccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (409)
Q Consensus 105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (409)
..|++++| ++.|..|++.+.....+|+|-...+.....+
T Consensus 215 ---------h~i~sl~y--s~Tg~~iLvvsg~aqakl~DRdG~~~~e~~K------------------------------ 253 (641)
T KOG0772|consen 215 ---------HQINSLQY--SVTGDQILVVSGSAQAKLLDRDGFEIVEFSK------------------------------ 253 (641)
T ss_pred ---------cccceeee--cCCCCeEEEEecCcceeEEccCCceeeeeec------------------------------
Confidence 46999999 7899999999999999999987766554432
Q ss_pred eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCceeeeeecCCCc
Q 015290 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (409)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~ 262 (409)
|...|-|+.. .++|...++|.+|+|.. +.++++ .||++++||+......++++..+.
T Consensus 254 ---------GDQYI~Dm~n----------TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~-- 312 (641)
T KOG0772|consen 254 ---------GDQYIRDMYN----------TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP-- 312 (641)
T ss_pred ---------cchhhhhhhc----------cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc--
Confidence 1222223322 27999999999999974 556677 999999999996666666643332
Q ss_pred CcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc--ceeeeEeccCCC
Q 015290 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQ 340 (409)
Q Consensus 263 ~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~g~ 340 (409)
..+..-.+++++|+|+| ++||+|..||.|.+|+.++..... ...+ -..|.. .|+++.||+||+
T Consensus 313 ~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p-~~~v-------------k~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRP-VMKV-------------KDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred CCCcccCceeeecCCCc-chhhhcccCCceeeeecCCccccc-ceEe-------------eeccCCCCceeEEEeccccc
Confidence 44566789999999999 999999999999999986532110 0111 123444 899999999999
Q ss_pred EEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEccc
Q 015290 341 HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (409)
Q Consensus 341 ~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~ 404 (409)
+|++-+ |+++++||++...+++.+..+-.... .-+.++||||.++|++|+.
T Consensus 378 ~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~-------------~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 378 YLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPF-------------PGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred hhhhccCCCceeeeeccccccchhhhcCCCccC-------------CCCccccCCCceEEEeccc
Confidence 999976 69999999998778887776654432 1258999999999999875
No 48
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.4e-30 Score=212.07 Aligned_cols=288 Identities=17% Similarity=0.179 Sum_probs=212.0
Q ss_pred eeeehhccCCCCCccccCCCcEEEEEECCCC-CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCcee
Q 015290 14 WKCSQAFGERNPDEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR 92 (409)
Q Consensus 14 w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (409)
=|+-+.|..+....+.+|.+.|.|++=+|.. ..+|+|+.||.|+|||+....
T Consensus 48 tKleR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~--------------------------- 100 (433)
T KOG0268|consen 48 TKLERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE--------------------------- 100 (433)
T ss_pred HHHHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh---------------------------
Confidence 3556677777777888899999999999966 789999999999999998765
Q ss_pred eeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccC
Q 015290 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (409)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (409)
+..++++|. +.|..|.+ +. ..+++++.|++|+.|.+... ....+. .+..
T Consensus 101 ~~~~f~AH~------------G~V~Gi~v--~~--~~~~tvgdDKtvK~wk~~~~-p~~til--------------g~s~ 149 (433)
T KOG0268|consen 101 CIRTFKAHE------------GLVRGICV--TQ--TSFFTVGDDKTVKQWKIDGP-PLHTIL--------------GKSV 149 (433)
T ss_pred hhheeeccc------------CceeeEEe--cc--cceEEecCCcceeeeeccCC-cceeee--------------cccc
Confidence 467889999 99999999 33 68999999999999998763 111111 1111
Q ss_pred ceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCC
Q 015290 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISD 250 (409)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~ 250 (409)
+....-+.....++++ +-.|.|||.+- ..+++.+ .-.-..|.++.|+|-. ..|+++ .|+.|.|||++ ..
T Consensus 150 ~~gIdh~~~~~~FaTc----Ge~i~IWD~~R---~~Pv~sm-swG~Dti~svkfNpvETsILas~~sDrsIvLyD~R-~~ 220 (433)
T KOG0268|consen 150 YLGIDHHRKNSVFATC----GEQIDIWDEQR---DNPVSSM-SWGADSISSVKFNPVETSILASCASDRSIVLYDLR-QA 220 (433)
T ss_pred cccccccccccccccc----Cceeeeccccc---CCcccee-ecCCCceeEEecCCCcchheeeeccCCceEEEecc-cC
Confidence 1111111111111111 22799999865 3445544 3345678999999975 455667 99999999999 55
Q ss_pred ceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccce
Q 015290 251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (409)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 330 (409)
.+++.+- ....-+.++|+|.+ ..|++|+.|..++.||++.-.. ++.. +.+|.+.|
T Consensus 221 ~Pl~KVi--------~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~---p~~v-------------~~dhvsAV 275 (433)
T KOG0268|consen 221 SPLKKVI--------LTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSR---PLNV-------------HKDHVSAV 275 (433)
T ss_pred Cccceee--------eeccccceecCccc-cceeeccccccceehhhhhhcc---cchh-------------hcccceeE
Confidence 5554431 12334689999977 8999999999999999987431 1222 45678899
Q ss_pred eeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 331 SDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 331 ~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
.+++|||.|+-+++|+ |.+|+||.... +|.. +.|+..+++.|+++.||.|.+|+++||+|++|
T Consensus 276 ~dVdfsptG~EfvsgsyDksIRIf~~~~---------~~SR------diYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nv 339 (433)
T KOG0268|consen 276 MDVDFSPTGQEFVSGSYDKSIRIFPVNH---------GHSR------DIYHTKRMQHVFCVKYSMDSKYIISGSDDGNV 339 (433)
T ss_pred EEeccCCCcchhccccccceEEEeecCC---------Ccch------hhhhHhhhheeeEEEEeccccEEEecCCCcce
Confidence 9999999999999998 59999999874 2332 23444566677899999999999999999987
No 49
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=3.3e-28 Score=207.37 Aligned_cols=282 Identities=15% Similarity=0.212 Sum_probs=202.2
Q ss_pred cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (409)
Q Consensus 30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (409)
+|...++-..|+|.|.|+|+|...|.|||||....+. -+..+++.-.
T Consensus 57 EH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~h-------------------------iLKnef~v~a-------- 103 (603)
T KOG0318|consen 57 EHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEH-------------------------ILKNEFQVLA-------- 103 (603)
T ss_pred cccceeEEEEeCCCceEEeecCCcCcEEEEeccCcce-------------------------eeeeeeeecc--------
Confidence 3888999999999999999999999999999876442 1223444444
Q ss_pred ceeccceEEEEEEecCCCCEEEEEe--CCC--eEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCce-
Q 015290 110 LEIEEKINRVRWCAAPNGSMFILST--NDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH- 184 (409)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 184 (409)
++|.+|+| +.++++|++.+ .++ .+-+||-- ...-.+..+ . ..+-++.+-+...+
T Consensus 104 ----G~I~Di~W--d~ds~RI~avGEGrerfg~~F~~DSG--~SvGei~Gh-S------------r~ins~~~KpsRPfR 162 (603)
T KOG0318|consen 104 ----GPIKDISW--DFDSKRIAAVGEGRERFGHVFLWDSG--NSVGEITGH-S------------RRINSVDFKPSRPFR 162 (603)
T ss_pred ----ccccccee--CCCCcEEEEEecCccceeEEEEecCC--Cccceeecc-c------------eeEeeeeccCCCceE
Confidence 89999999 89999988764 343 45556543 221111111 0 11112222222222
Q ss_pred eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (409)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (409)
+++++ .|+.+-+++-. ..+....+ ..|...|+|+.|+|||++++++ .||+|.+||-. +++.+..+. .-
T Consensus 163 i~T~s--dDn~v~ffeGP---PFKFk~s~-r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGk-tge~vg~l~----~~ 231 (603)
T KOG0318|consen 163 IATGS--DDNTVAFFEGP---PFKFKSSF-REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGK-TGEKVGELE----DS 231 (603)
T ss_pred EEecc--CCCeEEEeeCC---Ceeeeecc-cccccceeeEEECCCCCeEEEecCCccEEEEcCC-CccEEEEec----CC
Confidence 22333 26677776532 12222333 7899999999999999999998 99999999998 676666531 13
Q ss_pred cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (409)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 343 (409)
.+|.+.|.+++|+||+ +.|++++.|.+++|||+.+.++ .+.+.... . -......+.|- ...|+
T Consensus 232 ~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~sl----v~t~~~~~-~---------v~dqqvG~lWq--kd~lI 294 (603)
T KOG0318|consen 232 DAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSL----VSTWPMGS-T---------VEDQQVGCLWQ--KDHLI 294 (603)
T ss_pred CCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccce----EEEeecCC-c---------hhceEEEEEEe--CCeEE
Confidence 5899999999999999 9999999999999999998865 34444300 0 01234455665 34666
Q ss_pred Eee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCCC
Q 015290 344 SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDNG 409 (409)
Q Consensus 344 sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i~ 409 (409)
+.+ .|.|.+++... ..++..+.+|...+ ++++.+||+++|.+|+.||.|+
T Consensus 295 tVSl~G~in~ln~~d-~~~~~~i~GHnK~I---------------TaLtv~~d~~~i~SgsyDG~I~ 345 (603)
T KOG0318|consen 295 TVSLSGTINYLNPSD-PSVLKVISGHNKSI---------------TALTVSPDGKTIYSGSYDGHIN 345 (603)
T ss_pred EEEcCcEEEEecccC-CChhheecccccce---------------eEEEEcCCCCEEEeeccCceEE
Confidence 665 59999999985 77999999999987 7999999999999999999874
No 50
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.7e-29 Score=217.97 Aligned_cols=232 Identities=18% Similarity=0.271 Sum_probs=196.4
Q ss_pred CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecC-CCccccccccc
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSL 110 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~ 110 (409)
.+.|+++.|+++|.+||+|..+|.|.|||....+. +..+.+ |.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~---------------------------~~~~~~~h~--------- 260 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK---------------------------TRTLRGSHA--------- 260 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc---------------------------cccccCCcC---------
Confidence 68999999999999999999999999999987664 456667 77
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
..|-+++| + +..+.+|+.|+.|..+|++..+....
T Consensus 261 ---~rvg~laW--~--~~~lssGsr~~~I~~~dvR~~~~~~~-------------------------------------- 295 (484)
T KOG0305|consen 261 ---SRVGSLAW--N--SSVLSSGSRDGKILNHDVRISQHVVS-------------------------------------- 295 (484)
T ss_pred ---ceeEEEec--c--CceEEEecCCCcEEEEEEecchhhhh--------------------------------------
Confidence 89999999 3 66899999999999999987643211
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (409)
. +.+|...|..++|++|+.++|+| .|+.+.|||.. ....... +..|...
T Consensus 296 ---------------------~-~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~-~~~p~~~-------~~~H~aA 345 (484)
T KOG0305|consen 296 ---------------------T-LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL-SPEPKFT-------FTEHTAA 345 (484)
T ss_pred ---------------------h-hhcccceeeeeEECCCCCeeccCCCccceEeccCC-CccccEE-------Eecccee
Confidence 0 27899999999999999999999 99999999996 3333333 5789999
Q ss_pred eEEEEEeCCCCCEEEEEe--CCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe-e
Q 015290 270 ITSAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D 346 (409)
Q Consensus 270 v~~~~~~p~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg-~ 346 (409)
|.+++|+|-...+||+|+ .|++|++||..+++.. ..... ...|..+.|++..+-|+++ +
T Consensus 346 VKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i----~~vdt--------------gsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 346 VKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI----DSVDT--------------GSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred eeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe----ccccc--------------CCceeeEEEcCCCCEEEEecC
Confidence 999999999878999875 7999999999987642 33333 4689999999998766664 3
Q ss_pred --cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 347 --YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 347 --~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
++.|.||++.+ .+.+..+.+|...+ ..+++||||..+++|+.|.++
T Consensus 408 ~s~n~i~lw~~ps-~~~~~~l~gH~~RV---------------l~la~SPdg~~i~t~a~DETl 455 (484)
T KOG0305|consen 408 YSENQITLWKYPS-MKLVAELLGHTSRV---------------LYLALSPDGETIVTGAADETL 455 (484)
T ss_pred CCCCcEEEEeccc-cceeeeecCCccee---------------EEEEECCCCCEEEEecccCcE
Confidence 39999999986 88899999999986 699999999999999999875
No 51
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=4.3e-28 Score=220.23 Aligned_cols=270 Identities=14% Similarity=0.181 Sum_probs=189.3
Q ss_pred eeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeee
Q 015290 15 KCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK 94 (409)
Q Consensus 15 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (409)
||..+|+.. .+.-.|...|.....++|+..+++++.+..+..|+..++.... .+...+ ..+ ...
T Consensus 5 k~rh~~g~~--~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~-------~~~~~G-----~~~--~~~ 68 (493)
T PTZ00421 5 RFRHTQGVP--ARPDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVL-------KHTDYG-----KLA--SNP 68 (493)
T ss_pred ccccccccc--CCcccceeccccccccCCCCCcEeECCceEEEEEecCCceEEe-------eccccc-----cCC--CCC
Confidence 455666653 2333366777878888887778888888888889876543100 000000 000 011
Q ss_pred eeecCCCccccccccceeccceEEEEEEecC-CCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCc
Q 015290 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (409)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (409)
..+.+|. +.|.+++| +| ++++|++|+.|++|++||+.++......
T Consensus 69 ~~l~GH~------------~~V~~v~f--sP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~-------------------- 114 (493)
T PTZ00421 69 PILLGQE------------GPIIDVAF--NPFDPQKLFTASEDGTIMGWGIPEEGLTQNI-------------------- 114 (493)
T ss_pred ceEeCCC------------CCEEEEEE--cCCCCCEEEEEeCCCEEEEEecCCCcccccc--------------------
Confidence 2367888 89999999 56 7889999999999999999765321100
Q ss_pred eeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCc
Q 015290 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQ 251 (409)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~ 251 (409)
..++..+ .+|...|.+++|+|++ ++|++| .|++|+|||++ .+.
T Consensus 115 ---------------------------------~~~l~~L-~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~-tg~ 159 (493)
T PTZ00421 115 ---------------------------------SDPIVHL-QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE-RGK 159 (493)
T ss_pred ---------------------------------CcceEEe-cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC-CCe
Confidence 1222233 7899999999999985 688898 99999999998 565
Q ss_pred eeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc-ce
Q 015290 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SI 330 (409)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i 330 (409)
.... +.+|...|.+++|+|++ .+|++++.|+.|++||+++++. +..+.. |.. ..
T Consensus 160 ~~~~-------l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~----v~tl~~-------------H~~~~~ 214 (493)
T PTZ00421 160 AVEV-------IKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTI----VSSVEA-------------HASAKS 214 (493)
T ss_pred EEEE-------EcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcE----EEEEec-------------CCCCcc
Confidence 5554 57899999999999999 9999999999999999998753 233333 222 34
Q ss_pred eeeEeccCCCEEEEee-----cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEccc-
Q 015290 331 SDIKFANDGQHLLSRD-----YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY- 404 (409)
Q Consensus 331 ~~~~~s~~g~~l~sg~-----~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~- 404 (409)
..+.|.+++..+++++ |+.|++||++....++.....+.... +....|++|+.+|++++.
T Consensus 215 ~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~--------------~~~~~~d~d~~~L~lggkg 280 (493)
T PTZ00421 215 QRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA--------------LFIPFFDEDTNLLYIGSKG 280 (493)
T ss_pred eEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc--------------eEEEEEcCCCCEEEEEEeC
Confidence 5678899887776542 48999999986445555544333221 135679999999998874
Q ss_pred CCCC
Q 015290 405 RRDN 408 (409)
Q Consensus 405 dg~i 408 (409)
||+|
T Consensus 281 Dg~I 284 (493)
T PTZ00421 281 EGNI 284 (493)
T ss_pred CCeE
Confidence 8765
No 52
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=6.8e-30 Score=211.38 Aligned_cols=283 Identities=16% Similarity=0.241 Sum_probs=215.0
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (409)
Q Consensus 29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (409)
..|.+.|..+.|-++...|++|+.|..|++|++...+. ..+.++.|-.
T Consensus 172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~-------------------------~~~~tLaGs~------- 219 (459)
T KOG0288|consen 172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS-------------------------ELISTLAGSL------- 219 (459)
T ss_pred hccccccceeEEccCcchhhhcchhhhhhhhhcccchh-------------------------hhhhhhhccC-------
Confidence 34899999999999988999999999999999986652 2345566666
Q ss_pred cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (409)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (409)
++|+++.| .++++++++++.|+.+++|++...+....... +...++++.+......+++..
T Consensus 220 -----g~it~~d~--d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsG-HtdkVt~ak~~~~~~~vVsgs----------- 280 (459)
T KOG0288|consen 220 -----GNITSIDF--DSDNKHVIAASNDKNLRLWNVDSLRLRHTLSG-HTDKVTAAKFKLSHSRVVSGS----------- 280 (459)
T ss_pred -----CCcceeee--cCCCceEEeecCCCceeeeeccchhhhhhhcc-cccceeeehhhccccceeecc-----------
Confidence 88999999 79999999999999999999998877766655 444455555544444333322
Q ss_pred cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (409)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (409)
.|.++++||+.. ..|.++++.+. .+..+..+ ...+++| .|+.|++||.+ ...+... .+.+
T Consensus 281 ---~DRtiK~WDl~k---~~C~kt~l~~S--~cnDI~~~--~~~~~SgH~DkkvRfwD~R-s~~~~~s-------v~~g- 341 (459)
T KOG0288|consen 281 ---ADRTIKLWDLQK---AYCSKTVLPGS--QCNDIVCS--ISDVISGHFDKKVRFWDIR-SADKTRS-------VPLG- 341 (459)
T ss_pred ---ccchhhhhhhhh---hheeccccccc--cccceEec--ceeeeecccccceEEEecc-CCceeeE-------eecC-
Confidence 288999999987 56666553332 33455544 5668889 99999999999 5555554 2333
Q ss_pred CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-
Q 015290 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (409)
Q Consensus 268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~- 346 (409)
+.|+++..++++ ..+.+++.|.++.+.|+++.+.+ ..+.. ...+.+ ...+.+.|||++.|+|+|+
T Consensus 342 g~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI~----~~~sA-------~g~k~a--sDwtrvvfSpd~~YvaAGS~ 407 (459)
T KOG0288|consen 342 GRVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEIR----QTFSA-------EGFKCA--SDWTRVVFSPDGSYVAAGSA 407 (459)
T ss_pred cceeeEeeccCC-eEEeeecCCCceeeeecccccEE----EEeec-------cccccc--cccceeEECCCCceeeeccC
Confidence 489999999999 88888899999999999997753 23322 111222 2488999999999999997
Q ss_pred cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCCC
Q 015290 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDNG 409 (409)
Q Consensus 347 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i~ 409 (409)
||.|+||++.+ +++...++...... .|++++|+|.|..|++++.++.++
T Consensus 408 dgsv~iW~v~t-gKlE~~l~~s~s~~-------------aI~s~~W~~sG~~Llsadk~~~v~ 456 (459)
T KOG0288|consen 408 DGSVYIWSVFT-GKLEKVLSLSTSNA-------------AITSLSWNPSGSGLLSADKQKAVT 456 (459)
T ss_pred CCcEEEEEccC-ceEEEEeccCCCCc-------------ceEEEEEcCCCchhhcccCCcceE
Confidence 59999999986 88887777655431 127999999999999999988653
No 53
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.4e-27 Score=216.97 Aligned_cols=220 Identities=14% Similarity=0.155 Sum_probs=166.0
Q ss_pred cccCCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290 28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (409)
..+|.+.|++++|+| ++++||+|+.||+|++||+.+.... ....+++..+.+|.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~--------------------~~~~~~l~~L~gH~----- 125 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLT--------------------QNISDPIVHLQGHT----- 125 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccc--------------------cccCcceEEecCCC-----
Confidence 456999999999999 8899999999999999999765320 00112456788998
Q ss_pred cccceeccceEEEEEEecCCC-CEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290 107 LKSLEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (409)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (409)
..|.+++| +|++ .+|++++.|++|+|||+.+++....
T Consensus 126 -------~~V~~l~f--~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~--------------------------------- 163 (493)
T PTZ00421 126 -------KKVGIVSF--HPSAMNVLASAGADMVVNVWDVERGKAVEV--------------------------------- 163 (493)
T ss_pred -------CcEEEEEe--CcCCCCEEEEEeCCCEEEEEECCCCeEEEE---------------------------------
Confidence 89999999 5654 6899999999999999987643322
Q ss_pred ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (409)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~ 264 (409)
+.+|...|.+++|+|++.+|+++ .|+.|++||++ .+..+.. +.
T Consensus 164 ----------------------------l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~r-sg~~v~t-------l~ 207 (493)
T PTZ00421 164 ----------------------------IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR-DGTIVSS-------VE 207 (493)
T ss_pred ----------------------------EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECC-CCcEEEE-------Ee
Confidence 15688899999999999999999 99999999999 5655554 45
Q ss_pred CccCc-eEEEEEeCCCCCEEEEEe----CCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC
Q 015290 265 DLTEV-ITSAEFHPIYCNLLAYSS----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (409)
Q Consensus 265 ~~~~~-v~~~~~~p~~~~~l~s~s----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 339 (409)
+|.+. ...+.|.+++ ..+++++ .|+.|++||+++.... ...... .+...+....|++++
T Consensus 208 ~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p---~~~~~~------------d~~~~~~~~~~d~d~ 271 (493)
T PTZ00421 208 AHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMASP---YSTVDL------------DQSSALFIPFFDEDT 271 (493)
T ss_pred cCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCCc---eeEecc------------CCCCceEEEEEcCCC
Confidence 66554 4567889987 6666543 4799999999875421 111111 012356667899999
Q ss_pred CEEEEee--cCeEEEEEccCCCcceEEEec
Q 015290 340 QHLLSRD--YMNLKLWDIRMDSTPVATFKI 367 (409)
Q Consensus 340 ~~l~sg~--~~~v~iwd~~~~~~~~~~~~~ 367 (409)
++|++++ |+.|++||+.. ++++.....
T Consensus 272 ~~L~lggkgDg~Iriwdl~~-~~~~~~~~~ 300 (493)
T PTZ00421 272 NLLYIGSKGEGNIRCFELMN-ERLTFCSSY 300 (493)
T ss_pred CEEEEEEeCCCeEEEEEeeC-CceEEEeec
Confidence 9988764 69999999985 666655443
No 54
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=6.7e-29 Score=198.43 Aligned_cols=305 Identities=16% Similarity=0.163 Sum_probs=223.0
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (409)
Q Consensus 29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (409)
..|+.++.+.+|+|||.++|+|+.|..|+|.|++..... ...+++.- . ........+++|-.|.
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlak----s~~~em~~--~---~~qa~hPvIRTlYDH~------- 172 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAK----SKPKEMIS--G---DTQARHPVIRTLYDHV------- 172 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhh----cchhhhcc--C---CcccCCceEeehhhcc-------
Confidence 349999999999999999999999999999999732210 00000000 0 0011223577788888
Q ss_pred cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (409)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (409)
+.|+++.|+ |....|++++.|++|++||+.....++-.+. ......+.+..++|.+.++..|
T Consensus 173 -----devn~l~FH--Pre~ILiS~srD~tvKlFDfsK~saKrA~K~-----------~qd~~~vrsiSfHPsGefllvg 234 (430)
T KOG0640|consen 173 -----DEVNDLDFH--PRETILISGSRDNTVKLFDFSKTSAKRAFKV-----------FQDTEPVRSISFHPSGEFLLVG 234 (430)
T ss_pred -----Ccccceeec--chhheEEeccCCCeEEEEecccHHHHHHHHH-----------hhccceeeeEeecCCCceEEEe
Confidence 899999995 7888999999999999999975543332211 1222345566677888888877
Q ss_pred cccccceeEEEecCCcccceeeee--eccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290 189 EWTENMATKIANVGNSVHARCQKV--YPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (409)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (409)
.. -.++++||+++ .+|... ....|.+.|+++.+++.+++.++| .||.|+|||-- ...++.++ -..
T Consensus 235 Td--Hp~~rlYdv~T---~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGV-S~rCv~t~------~~A 302 (430)
T KOG0640|consen 235 TD--HPTLRLYDVNT---YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGV-SNRCVRTI------GNA 302 (430)
T ss_pred cC--CCceeEEeccc---eeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccc-cHHHHHHH------Hhh
Confidence 63 44899999987 344322 225789999999999999999999 99999999987 67787764 345
Q ss_pred cc-CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE
Q 015290 266 LT-EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (409)
Q Consensus 266 ~~-~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s 344 (409)
|. ..|.+..|..+| +++++.+.|..+++|++.+++. ++.+.+ ... .+-..--+...|+....|++.
T Consensus 303 H~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t~R~----l~~YtG-Ag~-------tgrq~~rtqAvFNhtEdyVl~ 369 (430)
T KOG0640|consen 303 HGGSEVCSAVFTKNG-KYILSSGKDSTVKLWEISTGRM----LKEYTG-AGT-------TGRQKHRTQAVFNHTEDYVLF 369 (430)
T ss_pred cCCceeeeEEEccCC-eEEeecCCcceeeeeeecCCce----EEEEec-CCc-------ccchhhhhhhhhcCccceEEc
Confidence 54 568999999999 9999999999999999999874 344433 100 000112244568888889988
Q ss_pred eec--CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290 345 RDY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD 407 (409)
Q Consensus 345 g~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~ 407 (409)
-++ +.+.-||.++..+....-.+|.+.+ +.+.-||.+..+.+||.|-.
T Consensus 370 pDEas~slcsWdaRtadr~~l~slgHn~a~---------------R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 370 PDEASNSLCSWDARTADRVALLSLGHNGAV---------------RWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred cccccCceeeccccchhhhhhcccCCCCCc---------------eEEEeCCCCCceeeecccce
Confidence 875 8999999997444433444787775 68999999999999999865
No 55
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4.1e-28 Score=215.02 Aligned_cols=282 Identities=13% Similarity=0.136 Sum_probs=222.3
Q ss_pred CccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (409)
Q Consensus 26 ~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (409)
....+|...|.+++++.+...+++|+ .+.++||+..+.+. ++++..
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kc---------------------------iRTi~~------ 412 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKC---------------------------IRTITC------ 412 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcce---------------------------eEEecc------
Confidence 44556999999999999998888886 46899999997763 343332
Q ss_pred ccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (409)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (409)
+.+.+..|. |.+.++++|...|.+.+||+.......... ..++.+-+....+++...
T Consensus 413 --------~y~l~~~Fv--pgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~-------------AHdgaIWsi~~~pD~~g~ 469 (888)
T KOG0306|consen 413 --------GYILASKFV--PGDRYIVLGTKNGELQVFDLASASLVETIR-------------AHDGAIWSISLSPDNKGF 469 (888)
T ss_pred --------ccEEEEEec--CCCceEEEeccCCceEEEEeehhhhhhhhh-------------ccccceeeeeecCCCCce
Confidence 468888895 788899999999999999998876654433 123445555556666666
Q ss_pred ecccccccceeEEEecCCccc--ceeeeee------ccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeee
Q 015290 186 YHLEWTENMATKIANVGNSVH--ARCQKVY------PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV 256 (409)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~--~~~~~~~------~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~ 256 (409)
.+++. |.+|++|+...... +...+.+ ...-...|.|+++||||++|+.+ -|.++++|-+. +-+..-.
T Consensus 470 vT~sa--DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD-tlKFfls- 545 (888)
T KOG0306|consen 470 VTGSA--DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD-TLKFFLS- 545 (888)
T ss_pred EEecC--CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEec-ceeeeee-
Confidence 66665 89999999864332 1111100 12345779999999999999999 99999999998 4333322
Q ss_pred ecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEec
Q 015290 257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (409)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 336 (409)
+.||.-+|.++.++||+ ++++|||.|..|++|-+.-|. |. +. |-+|...|.++.|-
T Consensus 546 ------LYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGD-CH---KS-------------~fAHdDSvm~V~F~ 601 (888)
T KOG0306|consen 546 ------LYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGD-CH---KS-------------FFAHDDSVMSVQFL 601 (888)
T ss_pred ------ecccccceeEEeccCCc-CeEEeccCCCceEEeccccch-hh---hh-------------hhcccCceeEEEEc
Confidence 78999999999999999 999999999999999988765 31 22 34567899999999
Q ss_pred cCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 337 NDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 337 ~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
|+..++.+++ |+.|+-||-.+ -..++.+.+|...+ ++++.+|+|.+++++|.|.+|
T Consensus 602 P~~~~FFt~gKD~kvKqWDg~k-Fe~iq~L~~H~~ev---------------~cLav~~~G~~vvs~shD~sI 658 (888)
T KOG0306|consen 602 PKTHLFFTCGKDGKVKQWDGEK-FEEIQKLDGHHSEV---------------WCLAVSPNGSFVVSSSHDKSI 658 (888)
T ss_pred ccceeEEEecCcceEEeechhh-hhhheeeccchhee---------------eeeEEcCCCCeEEeccCCcee
Confidence 9988888877 59999999876 78899999999886 799999999999999999876
No 56
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=7.4e-28 Score=193.14 Aligned_cols=307 Identities=13% Similarity=0.118 Sum_probs=200.4
Q ss_pred ccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (409)
Q Consensus 27 ~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (409)
.+.+|.+.|++|+|+.||++||+++.|++|+||++.+-... +.++++.
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~----------------------eHr~~R~---------- 128 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK----------------------EHRCIRQ---------- 128 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhh----------------------hhhHhhc----------
Confidence 34459999999999999999999999999999999875421 1111110
Q ss_pred cccceeccceEEEEEEecCCCCEEEEE-eCCCeEEEEEcCCceeeeeeccCCCccccccccccc-ccCceeccCCCCCce
Q 015290 107 LKSLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA-EKNFMNEHNPPSFAH 184 (409)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 184 (409)
+++- +..+.+.| +||.+-++.+ -...++++|.+...+--. ..++.. .+-...|... ....+.....+...+
T Consensus 129 --nve~-dhpT~V~F--apDc~s~vv~~~~g~~l~vyk~~K~~dG~-~~~~~v-~~D~~~f~~kh~v~~i~iGiA~~~k~ 201 (420)
T KOG2096|consen 129 --NVEY-DHPTRVVF--APDCKSVVVSVKRGNKLCVYKLVKKTDGS-GSHHFV-HIDNLEFERKHQVDIINIGIAGNAKY 201 (420)
T ss_pred --cccC-CCceEEEE--CCCcceEEEEEccCCEEEEEEeeecccCC-CCcccc-cccccccchhcccceEEEeecCCceE
Confidence 0011 34678899 6787766554 555689999764322100 000000 0000011111 122334444566677
Q ss_pred eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCC--ceeeeeecCCC
Q 015290 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD--QCFNIVDMKPS 261 (409)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~--~~~~~~~~~~~ 261 (409)
+.+++. |..|.+|++.. +.+... ...+..-+..+++|+|++++++ ---.+++|.+-.++ ..... .+..
T Consensus 202 imsas~--dt~i~lw~lkG----q~L~~i-dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev--~rvf 272 (420)
T KOG2096|consen 202 IMSASL--DTKICLWDLKG----QLLQSI-DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEV--KRVF 272 (420)
T ss_pred EEEecC--CCcEEEEecCC----ceeeee-ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhh--hhhh
Confidence 777766 88999999973 555544 4444555677899999999987 77789999875222 11111 1123
Q ss_pred cCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCE
Q 015290 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (409)
Q Consensus 262 ~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 341 (409)
.+.+|...|..++|+|+. ..+++.|.||.+++||+.-.-...+..+++.. .+ ..+..-.+....++++|.|+.
T Consensus 273 ~LkGH~saV~~~aFsn~S-~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~---g~---~pl~aag~~p~RL~lsP~g~~ 345 (420)
T KOG2096|consen 273 SLKGHQSAVLAAAFSNSS-TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKE---GS---APLHAAGSEPVRLELSPSGDS 345 (420)
T ss_pred eeccchhheeeeeeCCCc-ceeEEEecCCcEEEeeccceEecCCCchHhhc---CC---cchhhcCCCceEEEeCCCCcE
Confidence 478999999999999998 99999999999999998653222222233322 00 001111233448999999999
Q ss_pred EEEeecCeEEEEEccCCCcceEEEe-cccCcccccccccCCCCccceeeEEEcCCCCeEEEccc
Q 015290 342 LLSRDYMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (409)
Q Consensus 342 l~sg~~~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~ 404 (409)
||......+++|..+. ++....++ .|..-+ .+++|+++|+++|++++
T Consensus 346 lA~s~gs~l~~~~se~-g~~~~~~e~~h~~~I---------------s~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 346 LAVSFGSDLKVFASED-GKDYPELEDIHSTTI---------------SSISYSSDGKYIATCGD 393 (420)
T ss_pred EEeecCCceEEEEccc-CccchhHHHhhcCce---------------eeEEecCCCcEEeeecc
Confidence 9988778999999886 66555443 354443 69999999999999985
No 57
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=6.8e-28 Score=219.86 Aligned_cols=245 Identities=17% Similarity=0.288 Sum_probs=197.0
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (409)
Q Consensus 29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (409)
.+|...|++++|+||++++++|+.|++|+|||+.... +.++++++|.
T Consensus 200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~--------------------------~~~~~l~gH~------- 246 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG--------------------------RNLKTLKGHS------- 246 (456)
T ss_pred cccccceeeeEECCCCcEEEEecCCceEEEeeccCCC--------------------------eEEEEecCCC-------
Confidence 5699999999999999999999999999999994332 2678899999
Q ss_pred cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (409)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (409)
..|++++| +|+|+++++|+.|++|+|||+.++++......+. ..+..+.+++++..+..+
T Consensus 247 -----~~v~~~~f--~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs-------------~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 247 -----TYVTSVAF--SPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS-------------DGISGLAFSPDGNLLVSA 306 (456)
T ss_pred -----CceEEEEe--cCCCCEEEEecCCCcEEEEeccCCeEEEeeeccC-------------CceEEEEECCCCCEEEEc
Confidence 89999999 6899999999999999999999988877765443 234555667777788777
Q ss_pred cccccceeEEEecCCcccceeeeeecccccc--ceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290 189 EWTENMATKIANVGNSVHARCQKVYPHAHDF--NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (409)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (409)
+. |+.+++||+.+.... +...+ .++.. +++++.|+|++++++++ .|+.+++||++ ....... +.+
T Consensus 307 s~--d~~i~vwd~~~~~~~-~~~~~-~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~-~~~~~~~-------~~~ 374 (456)
T KOG0266|consen 307 SY--DGTIRVWDLETGSKL-CLKLL-SGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR-SGKSVGT-------YTG 374 (456)
T ss_pred CC--CccEEEEECCCCcee-eeecc-cCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc-CCcceee-------ecc
Confidence 54 999999999885432 34444 33333 59999999999999999 99999999999 5655555 355
Q ss_pred ccC---ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccc-ccceeeeEeccCCCE
Q 015290 266 LTE---VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDGQH 341 (409)
Q Consensus 266 ~~~---~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~g~~ 341 (409)
|.. .+.+...++.+ .++++|+.|+.|.+||+.++.. ...+.. | ...+..+.++|..++
T Consensus 375 ~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s~~~----~~~l~~-------------h~~~~~~~~~~~~~~~~ 436 (456)
T KOG0266|consen 375 HSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSSGGI----LQRLEG-------------HSKAAVSDLSSHPTENL 436 (456)
T ss_pred cCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCccch----hhhhcC-------------CCCCceeccccCCCcCe
Confidence 544 34455667888 9999999999999999988543 233333 4 568899999999999
Q ss_pred EEEee---cCeEEEEEcc
Q 015290 342 LLSRD---YMNLKLWDIR 356 (409)
Q Consensus 342 l~sg~---~~~v~iwd~~ 356 (409)
+++++ |+.+++|...
T Consensus 437 ~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 437 IASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eeecCcCCCceEEEecCC
Confidence 99886 5999999864
No 58
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.2e-26 Score=177.59 Aligned_cols=302 Identities=19% Similarity=0.276 Sum_probs=209.1
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
....|.+++|+|.|.+.|+|++..+.+|......... |...+. ...|..-....-+.|.
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~------r~~hea------~~~pp~v~~kr~khhk--------- 89 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDL------RHAHEA------AKQPPSVLCKRNKHHK--------- 89 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCc------cccccc------ccCCCeEEeeeccccC---------
Confidence 4789999999999999999999999999876543210 000000 0111111222334555
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceec----cCCCCCceee
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE----HNPPSFAHGY 186 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 186 (409)
+.|.|.+| +|+|+++++++.|++|++..++...+...-. .+.+.-.++.+... .....+.+++
T Consensus 90 ---gsiyc~~w--s~~geliatgsndk~ik~l~fn~dt~~~~g~--------dle~nmhdgtirdl~fld~~~s~~~il~ 156 (350)
T KOG0641|consen 90 ---GSIYCTAW--SPCGELIATGSNDKTIKVLPFNADTCNATGH--------DLEFNMHDGTIRDLAFLDDPESGGAILA 156 (350)
T ss_pred ---ccEEEEEe--cCccCeEEecCCCceEEEEecccccccccCc--------ceeeeecCCceeeeEEecCCCcCceEEE
Confidence 89999999 8999999999999999998877554332110 00111111222111 1122233444
Q ss_pred cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (409)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (409)
+++ ..|..|.+-|... ++..+.+ .+|.+.|.++ ++-++-++++| +|.+|++||++ -..++.+++.....-.-
T Consensus 157 s~g-agdc~iy~tdc~~---g~~~~a~-sghtghilal-yswn~~m~~sgsqdktirfwdlr-v~~~v~~l~~~~~~~gl 229 (350)
T KOG0641|consen 157 SAG-AGDCKIYITDCGR---GQGFHAL-SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLR-VNSCVNTLDNDFHDGGL 229 (350)
T ss_pred ecC-CCcceEEEeecCC---CCcceee-cCCcccEEEE-EEecCcEEEccCCCceEEEEeee-ccceeeeccCcccCCCc
Confidence 433 2355777777765 6667776 8999999887 44468889999 99999999999 66677765433111111
Q ss_pred ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (409)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg 345 (409)
..+.|.+++..|.| ++|++|-.|....+||++.++. ++. |..|...|.++.|+|...||+++
T Consensus 230 essavaav~vdpsg-rll~sg~~dssc~lydirg~r~----iq~-------------f~phsadir~vrfsp~a~yllt~ 291 (350)
T KOG0641|consen 230 ESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRM----IQR-------------FHPHSADIRCVRFSPGAHYLLTC 291 (350)
T ss_pred ccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCce----eee-------------eCCCccceeEEEeCCCceEEEEe
Confidence 23679999999999 9999999999999999999864 233 34457899999999999999999
Q ss_pred e-cCeEEEEEccCCCc-----ceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 346 D-YMNLKLWDIRMDST-----PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 346 ~-~~~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
+ |..|++-|++ +. ++.....|.... ..+.|+|..-.+++.|.|.++
T Consensus 292 syd~~ikltdlq--gdla~el~~~vv~ehkdk~---------------i~~rwh~~d~sfisssadkt~ 343 (350)
T KOG0641|consen 292 SYDMKIKLTDLQ--GDLAHELPIMVVAEHKDKA---------------IQCRWHPQDFSFISSSADKTA 343 (350)
T ss_pred cccceEEEeecc--cchhhcCceEEEEeccCce---------------EEEEecCccceeeeccCcceE
Confidence 8 4999999986 33 233444555543 489999999989999999875
No 59
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.1e-27 Score=212.43 Aligned_cols=179 Identities=15% Similarity=0.102 Sum_probs=142.1
Q ss_pred cceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceE
Q 015290 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (409)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (409)
++.+++|+..+ .+|++++ ..+.+.+..|-|.++++++| ..|.+.+||+. ....+.+ ...|.+.++
T Consensus 393 ~~SikiWn~~t---~kciRTi---~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla-S~~l~Et-------i~AHdgaIW 458 (888)
T KOG0306|consen 393 GESIKIWNRDT---LKCIRTI---TCGYILASKFVPGDRYIVLGTKNGELQVFDLA-SASLVET-------IRAHDGAIW 458 (888)
T ss_pred CCcEEEEEccC---cceeEEe---ccccEEEEEecCCCceEEEeccCCceEEEEee-hhhhhhh-------hhcccccee
Confidence 45799999976 6888877 23378899999999999999 99999999998 6666655 678999999
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEeCCCccc-cccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCe
Q 015290 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL-CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 349 (409)
Q Consensus 272 ~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~ 349 (409)
+++.+||+ ..+++||.|.+|++||..--.. .....+.+..++.. --.-...|.++.+||||++||.+- |++
T Consensus 459 si~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~r------tLel~ddvL~v~~Spdgk~LaVsLLdnT 531 (888)
T KOG0306|consen 459 SISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTR------TLELEDDVLCVSVSPDGKLLAVSLLDNT 531 (888)
T ss_pred eeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccce------EEeccccEEEEEEcCCCcEEEEEeccCe
Confidence 99999999 9999999999999999753110 00000111110000 001146899999999999999995 799
Q ss_pred EEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 350 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
|+||-+++ -+..-.+.||.-++ .++..|||++.++|||.|.+|
T Consensus 532 VkVyflDt-lKFflsLYGHkLPV---------------~smDIS~DSklivTgSADKnV 574 (888)
T KOG0306|consen 532 VKVYFLDT-LKFFLSLYGHKLPV---------------LSMDISPDSKLIVTGSADKNV 574 (888)
T ss_pred EEEEEecc-eeeeeeecccccce---------------eEEeccCCcCeEEeccCCCce
Confidence 99999986 78888888999886 799999999999999999986
No 60
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=5.7e-29 Score=192.95 Aligned_cols=277 Identities=14% Similarity=0.154 Sum_probs=221.4
Q ss_pred ccccCCCcEEEEEECC---CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcc
Q 015290 27 EELQDVDIVSAIEFDK---TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (409)
Q Consensus 27 ~~~~h~~~v~~v~~~~---~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 103 (409)
.=.+|..+|..++|+| +|-+|++++.||.-.+-+-+++. .+.+|.||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgd---------------------------wigtfeghk-- 59 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGD---------------------------WIGTFEGHK-- 59 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCC---------------------------cEEeeeccC--
Confidence 3456999999999997 89999999999987777777666 578999999
Q ss_pred ccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc
Q 015290 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (409)
Q Consensus 104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (409)
++|++... +.+...-++++.|=+-++||.-++.....+.. .-.+..+.++.+..
T Consensus 60 ----------gavw~~~l--~~na~~aasaaadftakvw~a~tgdelhsf~h--------------khivk~~af~~ds~ 113 (334)
T KOG0278|consen 60 ----------GAVWSATL--NKNATRAASAAADFTAKVWDAVTGDELHSFEH--------------KHIVKAVAFSQDSN 113 (334)
T ss_pred ----------cceeeeec--Cchhhhhhhhcccchhhhhhhhhhhhhhhhhh--------------hheeeeEEecccch
Confidence 99999998 67777888999999999999988865543321 12234555666667
Q ss_pred eeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCc
Q 015290 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (409)
Q Consensus 184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~ 262 (409)
.+.+|++ +..+|++|++... .+...+ .+|.+.|..+.|....+.++++ .|++|++||.+ ++..++.+.
T Consensus 114 ~lltgg~--ekllrvfdln~p~--App~E~-~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r-Tgt~v~sL~----- 182 (334)
T KOG0278|consen 114 YLLTGGQ--EKLLRVFDLNRPK--APPKEI-SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR-TGTEVQSLE----- 182 (334)
T ss_pred hhhccch--HHHhhhhhccCCC--CCchhh-cCCCCcceeEEEeccCceEEeeccCCceEEEEec-cCcEEEEEe-----
Confidence 7777776 7789999987632 233333 7999999999999989999998 99999999999 676666642
Q ss_pred CcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEE
Q 015290 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (409)
Q Consensus 263 ~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 342 (409)
....|+++.++++| .+|.+ ...+.|.+||..+-.+ ++.+.. ...|.+...+|+-..+
T Consensus 183 ---~~s~VtSlEvs~dG-~ilTi-a~gssV~Fwdaksf~~----lKs~k~--------------P~nV~SASL~P~k~~f 239 (334)
T KOG0278|consen 183 ---FNSPVTSLEVSQDG-RILTI-AYGSSVKFWDAKSFGL----LKSYKM--------------PCNVESASLHPKKEFF 239 (334)
T ss_pred ---cCCCCcceeeccCC-CEEEE-ecCceeEEeccccccc----eeeccC--------------ccccccccccCCCceE
Confidence 33678999999999 76555 4567899999987553 344444 3578999999998888
Q ss_pred EEeec-CeEEEEEccCCCcceEEE-ecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 343 LSRDY-MNLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 343 ~sg~~-~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
++|++ ..++.||..+ +..+..+ ++|.+++ .++.|+|||...|+||.||+|
T Consensus 240 VaGged~~~~kfDy~T-geEi~~~nkgh~gpV---------------hcVrFSPdGE~yAsGSEDGTi 291 (334)
T KOG0278|consen 240 VAGGEDFKVYKFDYNT-GEEIGSYNKGHFGPV---------------HCVRFSPDGELYASGSEDGTI 291 (334)
T ss_pred EecCcceEEEEEeccC-CceeeecccCCCCce---------------EEEEECCCCceeeccCCCceE
Confidence 88874 9999999997 7777776 8888876 699999999999999999987
No 61
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.6e-28 Score=217.00 Aligned_cols=249 Identities=13% Similarity=0.203 Sum_probs=198.4
Q ss_pred cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (409)
..+|.++|..++|+|++.++++|+.|-.|+||+..+.+ ++-++.||-
T Consensus 47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr---------------------------clftL~GHl------ 93 (1202)
T KOG0292|consen 47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR---------------------------CLFTLLGHL------ 93 (1202)
T ss_pred hhccCCccceeeecCCCCeEEecCCccEEEEEecccce---------------------------ehhhhcccc------
Confidence 34599999999999999999999999999999998765 577889999
Q ss_pred ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (409)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
+-|+.+.|| +.-..++++|.|.+|+||+..++++......+.+ .+.|.. ++|....+.+
T Consensus 94 ------DYVRt~~FH--heyPWIlSASDDQTIrIWNwqsr~~iavltGHnH-YVMcAq------------FhptEDlIVS 152 (1202)
T KOG0292|consen 94 ------DYVRTVFFH--HEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH-YVMCAQ------------FHPTEDLIVS 152 (1202)
T ss_pred ------ceeEEeecc--CCCceEEEccCCCeEEEEeccCCceEEEEecCce-EEEeec------------cCCccceEEE
Confidence 899999995 7788999999999999999999998887665433 233333 3444444555
Q ss_pred ccccccceeEEEecCCcc-----c--------------------ceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeE
Q 015290 188 LEWTENMATKIANVGNSV-----H--------------------ARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRI 241 (409)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~-----~--------------------~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i 241 (409)
++. |.+||+||+..-. . -..++..+.+|+..|+.++|+|.-..+++| +|..|
T Consensus 153 aSL--DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqV 230 (1202)
T KOG0292|consen 153 ASL--DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQV 230 (1202)
T ss_pred ecc--cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCccee
Confidence 554 8899999996311 0 112344458999999999999999999999 99999
Q ss_pred EEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcc
Q 015290 242 NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS 321 (409)
Q Consensus 242 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (409)
++|.+.. .+...+ .++.+|.+.|.++-|+|.. .++++.|.|+.|++||+..... ++.++. .
T Consensus 231 KlWrmne-tKaWEv-----DtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~kRt~----v~tfrr-e------- 291 (1202)
T KOG0292|consen 231 KLWRMNE-TKAWEV-----DTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMTKRTS----VQTFRR-E------- 291 (1202)
T ss_pred eEEEecc-ccceee-----hhhhcccCCcceEEecCcc-ceeEecCCCccEEEEecccccc----eeeeec-c-------
Confidence 9999983 333322 3478999999999999998 9999999999999999987543 344433 1
Q ss_pred cccccccceeeeEeccCCCEEEEeecCeEEEEEcc
Q 015290 322 FFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 356 (409)
Q Consensus 322 ~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~ 356 (409)
....+.++.+|..+++|+|-|+.+.+|.+.
T Consensus 292 -----ndRFW~laahP~lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 292 -----NDRFWILAAHPELNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred -----CCeEEEEEecCCcceeeeecCCceEEEEEc
Confidence 356888999999999999988666777765
No 62
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.5e-28 Score=210.61 Aligned_cols=235 Identities=17% Similarity=0.263 Sum_probs=195.7
Q ss_pred CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (409)
.-+|.+..|-+-.+++++|+.|..|+||+..+.++ +..|.+|.
T Consensus 55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek---------------------------V~~FeAH~---------- 97 (794)
T KOG0276|consen 55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK---------------------------VKTFEAHS---------- 97 (794)
T ss_pred ccchhhheeeeccceEEEecCCceEEEEeccccee---------------------------eEEeeccc----------
Confidence 45888888988889999999999999999998874 78899999
Q ss_pred eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (409)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (409)
+-|++|+.| |...+++++|.|-+|++||.+.+
T Consensus 98 --DyIR~iavH--Pt~P~vLtsSDDm~iKlW~we~~-------------------------------------------- 129 (794)
T KOG0276|consen 98 --DYIRSIAVH--PTLPYVLTSSDDMTIKLWDWENE-------------------------------------------- 129 (794)
T ss_pred --cceeeeeec--CCCCeEEecCCccEEEEeeccCc--------------------------------------------
Confidence 899999995 78889999999999999999765
Q ss_pred ccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (409)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (409)
..|.++| .+|...|.+++|+|. .+.++++ -|++|++|.+. +..+..+ +.+|...
T Consensus 130 ---------------wa~~qtf-eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslg-s~~~nfT-------l~gHekG 185 (794)
T KOG0276|consen 130 ---------------WACEQTF-EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLG-SPHPNFT-------LEGHEKG 185 (794)
T ss_pred ---------------eeeeeEE-cCcceEEEEEEecCCCccceeeeeccccEEEEEcC-CCCCcee-------eeccccC
Confidence 2445555 899999999999995 5789999 99999999999 4445555 7899999
Q ss_pred eEEEEEeCCCC-CEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-
Q 015290 270 ITSAEFHPIYC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 347 (409)
Q Consensus 270 v~~~~~~p~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~- 347 (409)
|+++.|-+.|. .+|++|+.|.+++|||..+.. | +++++ +|...|..+.|+|.-.++++|++
T Consensus 186 VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~-C---V~TLe-------------GHt~Nvs~v~fhp~lpiiisgsED 248 (794)
T KOG0276|consen 186 VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS-C---VQTLE-------------GHTNNVSFVFFHPELPIIISGSED 248 (794)
T ss_pred cceEEeccCCCcceEEecCCCceEEEeecchHH-H---HHHhh-------------cccccceEEEecCCCcEEEEecCC
Confidence 99999988663 599999999999999998865 3 34444 45788999999999999999985
Q ss_pred CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
|++|||+..+ -+...++...-..+ ++++-.+.+..++.|.+.|.|
T Consensus 249 GTvriWhs~T-y~lE~tLn~gleRv---------------W~I~~~k~~~~i~vG~Deg~i 293 (794)
T KOG0276|consen 249 GTVRIWNSKT-YKLEKTLNYGLERV---------------WCIAAHKGDGKIAVGFDEGSV 293 (794)
T ss_pred ccEEEecCcc-eehhhhhhcCCceE---------------EEEeecCCCCeEEEeccCCcE
Confidence 9999999876 45555554333332 788888888888888888765
No 63
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.5e-28 Score=188.72 Aligned_cols=250 Identities=16% Similarity=0.233 Sum_probs=194.3
Q ss_pred cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (409)
+.+|.+.|..+...-.|+.||||+.|++|+|+.+.... +.+++.+|.||+
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~------------------------~s~ll~~L~Gh~------ 56 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG------------------------QSKLLAELTGHS------ 56 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC------------------------CceeeeEecCCC------
Confidence 45699999999999999999999999999999998755 224678999999
Q ss_pred ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (409)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
++|..++|....-|..|++|+.||.|.||.-.+++..+...
T Consensus 57 ------GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e--------------------------------- 97 (299)
T KOG1332|consen 57 ------GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYE--------------------------------- 97 (299)
T ss_pred ------CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhh---------------------------------
Confidence 99999999622368899999999999999998885544322
Q ss_pred ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC--CCeEEEe-cCCeEEEEEccCCCc-eeeeeecCCCcC
Q 015290 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNM 263 (409)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~lwd~~~~~~-~~~~~~~~~~~~ 263 (409)
...|...|++++|.|. |-.|+++ .||.|.+.+.+..+. ....+ .
T Consensus 98 --------------------------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki------~ 145 (299)
T KOG1332|consen 98 --------------------------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKI------V 145 (299)
T ss_pred --------------------------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhh------h
Confidence 1679999999999886 6678888 999999999985422 22221 5
Q ss_pred cCccCceEEEEEeCC---C----------CCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccce
Q 015290 264 DDLTEVITSAEFHPI---Y----------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (409)
Q Consensus 264 ~~~~~~v~~~~~~p~---~----------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 330 (409)
..|.-.|++++|.|- | .+.|++|+.|+.|+||+..+++- .++ .++.+|.+.|
T Consensus 146 ~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w------~~e---------~~l~~H~dwV 210 (299)
T KOG1332|consen 146 FAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW------KLE---------RTLEGHKDWV 210 (299)
T ss_pred hccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcch------hhh---------hhhhhcchhh
Confidence 779999999999986 2 14699999999999999988632 111 1256778999
Q ss_pred eeeEeccCC----CEEEEeec-CeEEEEEccCCCcc--eEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290 331 SDIKFANDG----QHLLSRDY-MNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (409)
Q Consensus 331 ~~~~~s~~g----~~l~sg~~-~~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s 403 (409)
+.++|.|.- .+||+++. |+|.||-.+.+..+ ...++.....+ +.+.||+.|..|+.++
T Consensus 211 RDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~---------------w~vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 211 RDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVV---------------WRVSWSLSGNILAVSG 275 (299)
T ss_pred hhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcce---------------EEEEEeccccEEEEec
Confidence 999999963 47899985 99999987642221 11222222222 7999999999999998
Q ss_pred cCCCC
Q 015290 404 YRRDN 408 (409)
Q Consensus 404 ~dg~i 408 (409)
.|+.|
T Consensus 276 GdNkv 280 (299)
T KOG1332|consen 276 GDNKV 280 (299)
T ss_pred CCcEE
Confidence 88865
No 64
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=201.86 Aligned_cols=234 Identities=18% Similarity=0.254 Sum_probs=190.3
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
-.+.|.++.|-.||++||.|...|.|+|+|..+.. .++.+.+|+
T Consensus 67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~---------------------------iLR~~~ah~--------- 110 (487)
T KOG0310|consen 67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV---------------------------ILRQLYAHQ--------- 110 (487)
T ss_pred hccceeEEEeecCCeEEEccCCcCcEEEeccccHH---------------------------HHHHHhhcc---------
Confidence 46789999999999999999999999999955422 356788999
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
.+|..+.|+| .+++.|++|+.|+.+++||+.+...+.
T Consensus 111 ---apv~~~~f~~-~d~t~l~s~sDd~v~k~~d~s~a~v~~--------------------------------------- 147 (487)
T KOG0310|consen 111 ---APVHVTKFSP-QDNTMLVSGSDDKVVKYWDLSTAYVQA--------------------------------------- 147 (487)
T ss_pred ---CceeEEEecc-cCCeEEEecCCCceEEEEEcCCcEEEE---------------------------------------
Confidence 8999999975 677888999999999999998875311
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (409)
.+.+|.+.|.|.+|+|. +..+++| .||.|++||++.....+.. -.|..
T Consensus 148 ----------------------~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e--------lnhg~ 197 (487)
T KOG0310|consen 148 ----------------------ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE--------LNHGC 197 (487)
T ss_pred ----------------------EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE--------ecCCC
Confidence 12789999999999996 4578889 9999999999954444433 35888
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c
Q 015290 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (409)
Q Consensus 269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~ 347 (409)
+|.++.+-|.| ..+++++ .+.+++||+.+|... +..+ ..|...|+|+.+..++..|++|+ |
T Consensus 198 pVe~vl~lpsg-s~iasAg-Gn~vkVWDl~~G~ql---l~~~-------------~~H~KtVTcL~l~s~~~rLlS~sLD 259 (487)
T KOG0310|consen 198 PVESVLALPSG-SLIASAG-GNSVKVWDLTTGGQL---LTSM-------------FNHNKTVTCLRLASDSTRLLSGSLD 259 (487)
T ss_pred ceeeEEEcCCC-CEEEEcC-CCeEEEEEecCCcee---hhhh-------------hcccceEEEEEeecCCceEeecccc
Confidence 99999999998 8888876 457999999866431 1111 22567899999999999999998 7
Q ss_pred CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
+.|++||+.. -+.+..+...... .+++.+||++.++.|-.||.+
T Consensus 260 ~~VKVfd~t~-~Kvv~s~~~~~pv----------------Lsiavs~dd~t~viGmsnGlv 303 (487)
T KOG0310|consen 260 RHVKVFDTTN-YKVVHSWKYPGPV----------------LSIAVSPDDQTVVIGMSNGLV 303 (487)
T ss_pred cceEEEEccc-eEEEEeeecccce----------------eeEEecCCCceEEEeccccee
Confidence 9999999764 7888888765554 599999999999999999865
No 65
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.5e-28 Score=197.76 Aligned_cols=244 Identities=14% Similarity=0.214 Sum_probs=204.7
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (409)
..+.|..| +|||++|++++.||.|.+|+..+|++.+..+++... .|.-.+..++...++.+..++++|+. |
T Consensus 214 Sh~EcA~F--SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd-----~fMMmd~aVlci~FSRDsEMlAsGsq--D 284 (508)
T KOG0275|consen 214 SHVECARF--SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD-----NFMMMDDAVLCISFSRDSEMLASGSQ--D 284 (508)
T ss_pred cchhheee--CCCCceEeeccccceeeeehhccchhhhhhhhhhhc-----ceeecccceEEEeecccHHHhhccCc--C
Confidence 56788999 899999999999999999999999988877766554 34445667778888999999999988 9
Q ss_pred ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEE
Q 015290 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (409)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (409)
|.|++|.+++ ++|++.|-.+|...|+|+.|+.|+..++++ .|.++++.-+. .+++++. +.+|.+.|+.
T Consensus 285 GkIKvWri~t---G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK-SGK~LKE-------frGHsSyvn~ 353 (508)
T KOG0275|consen 285 GKIKVWRIET---GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK-SGKCLKE-------FRGHSSYVNE 353 (508)
T ss_pred CcEEEEEEec---chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc-cchhHHH-------hcCccccccc
Confidence 9999999987 899999877999999999999999999999 99999999999 7888876 8999999999
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC-CEEEEeec-CeE
Q 015290 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDY-MNL 350 (409)
Q Consensus 273 ~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~sg~~-~~v 350 (409)
+.|.++| ..+++++.||+|++|+..+.+ |....+.... ..+|+++..-|.. ..++.+.. ++|
T Consensus 354 a~ft~dG-~~iisaSsDgtvkvW~~Ktte-C~~Tfk~~~~--------------d~~vnsv~~~PKnpeh~iVCNrsntv 417 (508)
T KOG0275|consen 354 ATFTDDG-HHIISASSDGTVKVWHGKTTE-CLSTFKPLGT--------------DYPVNSVILLPKNPEHFIVCNRSNTV 417 (508)
T ss_pred eEEcCCC-CeEEEecCCccEEEecCcchh-hhhhccCCCC--------------cccceeEEEcCCCCceEEEEcCCCeE
Confidence 9999999 999999999999999998876 4333232222 4678888888865 56666664 999
Q ss_pred EEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD 407 (409)
Q Consensus 351 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~ 407 (409)
+|.++. |+.+..+.......... .+++.||.|.++.+.++|+.
T Consensus 418 ~imn~q--GQvVrsfsSGkREgGdF------------i~~~lSpkGewiYcigED~v 460 (508)
T KOG0275|consen 418 YIMNMQ--GQVVRSFSSGKREGGDF------------INAILSPKGEWIYCIGEDGV 460 (508)
T ss_pred EEEecc--ceEEeeeccCCccCCce------------EEEEecCCCcEEEEEccCcE
Confidence 999986 89999987655432211 48999999999999999974
No 66
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.2e-26 Score=183.91 Aligned_cols=240 Identities=20% Similarity=0.285 Sum_probs=185.6
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
-.+.|+++.|+++|.+|++++.|.+++|||..+++. +.++..+.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~---------------------------~~ti~skk--------- 56 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ---------------------------VKTINSKK--------- 56 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce---------------------------eeEeeccc---------
Confidence 367999999999999999999999999999998873 45555555
Q ss_pred eeccceEEEEEEecCCCCEEEEEeC--CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (409)
-.|..++|. .....++.++. |.+||..++.+++..+.
T Consensus 57 ---yG~~~~~Ft--h~~~~~i~sStk~d~tIryLsl~dNkylRY------------------------------------ 95 (311)
T KOG1446|consen 57 ---YGVDLACFT--HHSNTVIHSSTKEDDTIRYLSLHDNKYLRY------------------------------------ 95 (311)
T ss_pred ---ccccEEEEe--cCCceEEEccCCCCCceEEEEeecCceEEE------------------------------------
Confidence 467788884 44445555554 78899988887765443
Q ss_pred cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (409)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (409)
+.||...|+.++.+|-++.++++ .|++|++||++ ..++...+. .
T Consensus 96 -------------------------F~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR-~~~cqg~l~---------~ 140 (311)
T KOG1446|consen 96 -------------------------FPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLR-VKKCQGLLN---------L 140 (311)
T ss_pred -------------------------cCCCCceEEEEEecCCCCeEEecccCCeEEeeEec-CCCCceEEe---------c
Confidence 38999999999999999999999 99999999999 555554431 1
Q ss_pred CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (409)
Q Consensus 268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~ 347 (409)
..-..++|+|.| -+||++...+.|++||+|+-... +...+.. . .+.....+.+.|||||++|+.++.
T Consensus 141 ~~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dkg--PF~tf~i-~---------~~~~~ew~~l~FS~dGK~iLlsT~ 207 (311)
T KOG1446|consen 141 SGRPIAAFDPEG-LIFALANGSELIKLYDLRSFDKG--PFTTFSI-T---------DNDEAEWTDLEFSPDGKSILLSTN 207 (311)
T ss_pred CCCcceeECCCC-cEEEEecCCCeEEEEEecccCCC--CceeEcc-C---------CCCccceeeeEEcCCCCEEEEEeC
Confidence 223468999999 99999988889999999974211 1122222 0 012357889999999999998876
Q ss_pred -CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 348 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
+.+++.|.-. |..+..+.++....... ..++|+||++++++|+.||+|
T Consensus 208 ~s~~~~lDAf~-G~~~~tfs~~~~~~~~~------------~~a~ftPds~Fvl~gs~dg~i 256 (311)
T KOG1446|consen 208 ASFIYLLDAFD-GTVKSTFSGYPNAGNLP------------LSATFTPDSKFVLSGSDDGTI 256 (311)
T ss_pred CCcEEEEEccC-CcEeeeEeeccCCCCcc------------eeEEECCCCcEEEEecCCCcE
Confidence 9999999865 88888888776642110 389999999999999999987
No 67
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=1.5e-26 Score=226.60 Aligned_cols=256 Identities=14% Similarity=0.143 Sum_probs=188.4
Q ss_pred ccCCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290 29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (409)
Q Consensus 29 ~~h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (409)
..+...|.+++|+| ++.+||+++.||+|+|||+.+++ .+..+.+|.
T Consensus 529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~---------------------------~~~~~~~H~------ 575 (793)
T PLN00181 529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ---------------------------LVTEMKEHE------ 575 (793)
T ss_pred ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe---------------------------EEEEecCCC------
Confidence 33557899999988 57899999999999999998765 466788998
Q ss_pred ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (409)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
+.|++++|+| +++.+|++|+.|++|++||+.++........ ...+.++.+. .+++..++.
T Consensus 576 ------~~V~~l~~~p-~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~--~~~v~~v~~~-----------~~~g~~lat 635 (793)
T PLN00181 576 ------KRVWSIDYSS-ADPTLLASGSDDGSVKLWSINQGVSIGTIKT--KANICCVQFP-----------SESGRSLAF 635 (793)
T ss_pred ------CCEEEEEEcC-CCCCEEEEEcCCCEEEEEECCCCcEEEEEec--CCCeEEEEEe-----------CCCCCEEEE
Confidence 8999999952 4788999999999999999988766544331 1122222221 234555666
Q ss_pred ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCC-----CceeeeeecCCC
Q 015290 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-----DQCFNIVDMKPS 261 (409)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~-----~~~~~~~~~~~~ 261 (409)
++. |+.|++||+.... .+...+ .+|...|.++.|. ++..++++ .|++|++||++.. ...+..
T Consensus 636 gs~--dg~I~iwD~~~~~--~~~~~~-~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~------ 703 (793)
T PLN00181 636 GSA--DHKVYYYDLRNPK--LPLCTM-IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHS------ 703 (793)
T ss_pred EeC--CCeEEEEECCCCC--ccceEe-cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEE------
Confidence 654 8999999997532 133344 6899999999997 67789998 9999999999732 123333
Q ss_pred cCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCE
Q 015290 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (409)
Q Consensus 262 ~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 341 (409)
+.+|...+..++|+|++ .+|++|+.|+.|++|+....... ..+......+........|...|.+++|+|++.+
T Consensus 704 -~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~~----~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~ 777 (793)
T PLN00181 704 -FMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMPV----LSYKFKTIDPVSGLEVDDASQFISSVCWRGQSST 777 (793)
T ss_pred -EcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCce----EEEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence 67899999999999999 99999999999999998654321 1111100011111112345568999999999999
Q ss_pred EEEeec-CeEEEEEc
Q 015290 342 LLSRDY-MNLKLWDI 355 (409)
Q Consensus 342 l~sg~~-~~v~iwd~ 355 (409)
|++|+. |.|+||++
T Consensus 778 lva~~~dG~I~i~~~ 792 (793)
T PLN00181 778 LVAANSTGNIKILEM 792 (793)
T ss_pred EEEecCCCcEEEEec
Confidence 999975 99999996
No 68
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=6.5e-28 Score=195.66 Aligned_cols=244 Identities=15% Similarity=0.287 Sum_probs=183.6
Q ss_pred cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (409)
..+|++.|.|+.|. .+.|++|+.|.+|+|||+++++ ++.++-+|.
T Consensus 233 L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge---------------------------~l~tlihHc------ 277 (499)
T KOG0281|consen 233 LTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE---------------------------PLNTLIHHC------ 277 (499)
T ss_pred hhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc---------------------------hhhHHhhhc------
Confidence 45699999999996 6799999999999999999988 467788898
Q ss_pred ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (409)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
+.|..+.| .+| ++++++.|.+|.+||+.......... ........+.....+ ..++.+
T Consensus 278 ------eaVLhlrf---~ng-~mvtcSkDrsiaVWdm~sps~it~rr-----------VLvGHrAaVNvVdfd-~kyIVs 335 (499)
T KOG0281|consen 278 ------EAVLHLRF---SNG-YMVTCSKDRSIAVWDMASPTDITLRR-----------VLVGHRAAVNVVDFD-DKYIVS 335 (499)
T ss_pred ------ceeEEEEE---eCC-EEEEecCCceeEEEeccCchHHHHHH-----------HHhhhhhheeeeccc-cceEEE
Confidence 89999999 344 99999999999999997653211110 000111111111111 124555
Q ss_pred ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (409)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (409)
++. |.++++|++.+ ..+++++ .+|+..|-|+.+. ++++++| .|.+|++||+. .+.++++ +.+|
T Consensus 336 ASg--DRTikvW~~st---~efvRtl-~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~-~G~cLRv-------LeGH 399 (499)
T KOG0281|consen 336 ASG--DRTIKVWSTST---CEFVRTL-NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE-CGACLRV-------LEGH 399 (499)
T ss_pred ecC--CceEEEEeccc---eeeehhh-hcccccceehhcc--CeEEEecCCCceEEEEecc-ccHHHHH-------Hhch
Confidence 444 88999999977 7888887 9999999999884 8899999 99999999999 8888888 7999
Q ss_pred cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (409)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~ 346 (409)
..-|.++.|+. +.+++|+.||+|++||+..+.........+ -...+..|.+.|..+.|.. ..+++++
T Consensus 400 EeLvRciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~--------Cl~~lv~hsgRVFrLQFD~--fqIvsss 466 (499)
T KOG0281|consen 400 EELVRCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTL--------CLRTLVEHSGRVFRLQFDE--FQIISSS 466 (499)
T ss_pred HHhhhheeecC---ceeeeccccceEEEEecccccCCcccccch--------HHHhhhhccceeEEEeecc--eEEEecc
Confidence 99999999984 679999999999999998764321110000 0112345678999999974 3555555
Q ss_pred -cCeEEEEEccC
Q 015290 347 -YMNLKLWDIRM 357 (409)
Q Consensus 347 -~~~v~iwd~~~ 357 (409)
|.+|-|||+..
T Consensus 467 HddtILiWdFl~ 478 (499)
T KOG0281|consen 467 HDDTILIWDFLN 478 (499)
T ss_pred CCCeEEEEEcCC
Confidence 59999999974
No 69
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=4e-27 Score=217.34 Aligned_cols=281 Identities=14% Similarity=0.228 Sum_probs=196.3
Q ss_pred CCcEEEEEECCCCCEEEEEe--cCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290 32 VDIVSAIEFDKTGDYLAVGD--RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (409)
...|.+++.+|||..+|||+ .||.++||+.+.-.. +..+... . --+.+.....|.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~------~~~~~~~------~---l~k~l~~m~~h~-------- 69 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD------EKEEKNE------N---LPKHLCTMDDHD-------- 69 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccc------hhhhhhc------c---cchhheeecccc--------
Confidence 56799999999999999999 999999999763210 0000000 0 012345566777
Q ss_pred ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (409)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (409)
+.|+|+.| ++||++||+|+.|+.|.||+........... +
T Consensus 70 ----~sv~CVR~--S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fg----------------------------------s 109 (942)
T KOG0973|consen 70 ----GSVNCVRF--SPDGSYLASGSDDRLVMIWERAEIGSGTVFG----------------------------------S 109 (942)
T ss_pred ----CceeEEEE--CCCCCeEeeccCcceEEEeeecccCCccccc----------------------------------c
Confidence 99999999 8999999999999999999987411000000 0
Q ss_pred ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (409)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (409)
.+.-..+. ..+++..+ .+|...|..++|+|++.+|+++ .|++|.+||.. +...+.+ +.+|.+
T Consensus 110 ~g~~~~vE--------~wk~~~~l-~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~-tF~~~~v-------l~~H~s 172 (942)
T KOG0973|consen 110 TGGAKNVE--------SWKVVSIL-RGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK-TFELLKV-------LRGHQS 172 (942)
T ss_pred cccccccc--------eeeEEEEE-ecCCCccceeccCCCccEEEEecccceEEEEccc-cceeeee-------eecccc
Confidence 00000111 12344444 8899999999999999999999 99999999999 5567766 799999
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccccccc---------cccc----------------------
Q 015290 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA---------AESH---------------------- 317 (409)
Q Consensus 269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~---------~~~~---------------------- 317 (409)
.|..+.|+|-| ++||+-+.|++|++|++.+.......-+.|+.. .-+|
T Consensus 173 ~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie 251 (942)
T KOG0973|consen 173 LVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE 251 (942)
T ss_pred cccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEe
Confidence 99999999999 999999999999999976532110000000000 0001
Q ss_pred ----CCcccccccccceeeeEeccC-----CC------------EEEEee-cCeEEEEEccCCCcceEEEecccCccccc
Q 015290 318 ----GSKSFFTEIIASISDIKFAND-----GQ------------HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKL 375 (409)
Q Consensus 318 ----~~~~~~~~~~~~i~~~~~s~~-----g~------------~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 375 (409)
.....|-||..++.+++|+|. .+ .+|+|+ |++|-||.... .+++.....-...
T Consensus 252 R~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~-~RPl~vi~~lf~~---- 326 (942)
T KOG0973|consen 252 RGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL-PRPLFVIHNLFNK---- 326 (942)
T ss_pred cCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC-CCchhhhhhhhcC----
Confidence 011135689999999999982 11 456676 59999999865 5665554322111
Q ss_pred ccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 376 CDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 376 ~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
.|.+++|+|||..|..||.||+|
T Consensus 327 ----------SI~DmsWspdG~~LfacS~DGtV 349 (942)
T KOG0973|consen 327 ----------SIVDMSWSPDGFSLFACSLDGTV 349 (942)
T ss_pred ----------ceeeeeEcCCCCeEEEEecCCeE
Confidence 12699999999999999999987
No 70
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.6e-28 Score=214.91 Aligned_cols=238 Identities=19% Similarity=0.333 Sum_probs=190.8
Q ss_pred cEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccccee
Q 015290 34 IVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (409)
Q Consensus 34 ~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (409)
.+..|+|+. +.++|||++..|.|.+||+..... .+.+..|..|+
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r------------------------nk~l~~f~EH~----------- 133 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR------------------------NKLLTVFNEHE----------- 133 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCcccc------------------------chhhhHhhhhc-----------
Confidence 345678876 678999999999999999986221 12356688898
Q ss_pred ccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccc
Q 015290 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (409)
Q Consensus 113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (409)
..|.++.|+ +....+|++|+.||+|++||++..+.....
T Consensus 134 -Rs~~~ldfh-~tep~iliSGSQDg~vK~~DlR~~~S~~t~--------------------------------------- 172 (839)
T KOG0269|consen 134 -RSANKLDFH-STEPNILISGSQDGTVKCWDLRSKKSKSTF--------------------------------------- 172 (839)
T ss_pred -cceeeeeec-cCCccEEEecCCCceEEEEeeecccccccc---------------------------------------
Confidence 899999998 467779999999999999999876543321
Q ss_pred cceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (409)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (409)
.+....|+.|+|+|. +..++++ +.|.+.+||++....+... +..|.++|
T Consensus 173 ----------------------~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k-------~~AH~GpV 223 (839)
T KOG0269|consen 173 ----------------------RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKK-------LTAHNGPV 223 (839)
T ss_pred ----------------------cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHH-------hhcccCce
Confidence 345567899999985 6788888 9999999999977766654 78999999
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCE-EEEee---
Q 015290 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRD--- 346 (409)
Q Consensus 271 ~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~sg~--- 346 (409)
.++.|+|++ .+||+|+.|+.|+|||+.+.+.. .....+. ..++.++.|-|+.++ ||+++
T Consensus 224 ~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~--~~~tInT--------------iapv~rVkWRP~~~~hLAtcsmv~ 286 (839)
T KOG0269|consen 224 LCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAK--PKHTINT--------------IAPVGRVKWRPARSYHLATCSMVV 286 (839)
T ss_pred EEEeecCCC-ceeeecCCCccEEEEeccCCCcc--ceeEEee--------------cceeeeeeeccCccchhhhhhccc
Confidence 999999988 99999999999999999875431 1122222 468999999998764 55554
Q ss_pred cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcC-CCCeEEEcccCCCC
Q 015290 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYRRDN 408 (409)
Q Consensus 347 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~s~s~dg~i 408 (409)
|-.|+|||++.+--+..++..|...+ +.++|.. |-..|.+++.||+|
T Consensus 287 dtsV~VWDvrRPYIP~~t~~eH~~~v---------------t~i~W~~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 287 DTSVHVWDVRRPYIPYATFLEHTDSV---------------TGIAWDSGDRINLWSCSKDGTV 334 (839)
T ss_pred cceEEEEeeccccccceeeeccCccc---------------cceeccCCCceeeEeecCccHH
Confidence 48999999997677889999999876 6899986 55678899999976
No 71
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.6e-27 Score=181.33 Aligned_cols=196 Identities=20% Similarity=0.277 Sum_probs=157.5
Q ss_pred eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (409)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (409)
.++.+..++|++ ...+.+++++.||++++||+...
T Consensus 59 ~~D~LfdV~Wse-~~e~~~~~a~GDGSLrl~d~~~~-------------------------------------------- 93 (311)
T KOG0277|consen 59 TEDGLFDVAWSE-NHENQVIAASGDGSLRLFDLTMP-------------------------------------------- 93 (311)
T ss_pred cccceeEeeecC-CCcceEEEEecCceEEEeccCCC--------------------------------------------
Confidence 337899999964 33457889999999999994321
Q ss_pred ccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (409)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (409)
..+++.+ +.|...|.++.|++. ++.++++ .|++|++|+.. ....+.+ +.+|...
T Consensus 94 ---------------s~Pi~~~-kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~-r~~Sv~T-------f~gh~~~ 149 (311)
T KOG0277|consen 94 ---------------SKPIHKF-KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN-RPNSVQT-------FNGHNSC 149 (311)
T ss_pred ---------------CcchhHH-HhhhhheEEeccccccceeEEeeccCCceEeecCC-CCcceEe-------ecCCccE
Confidence 1334444 889999999999985 5566777 99999999998 6666766 7899999
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC-CEEEEee-c
Q 015290 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-Y 347 (409)
Q Consensus 270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~sg~-~ 347 (409)
|+..+|+|..+++|+++|.|+.+++||++.... . ..+ ..|...|.++.|+.-. ..|+||+ |
T Consensus 150 Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk---~-~~i-------------~ah~~Eil~cdw~ky~~~vl~Tg~vd 212 (311)
T KOG0277|consen 150 IYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK---F-MSI-------------EAHNSEILCCDWSKYNHNVLATGGVD 212 (311)
T ss_pred EEEEecCCCCCCeEEEccCCceEEEEEecCCCc---e-eEE-------------EeccceeEeecccccCCcEEEecCCC
Confidence 999999999889999999999999999987421 1 112 3346789999999854 5777886 6
Q ss_pred CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCC-CCeEEEcccCCCC
Q 015290 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYRRDN 408 (409)
Q Consensus 348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~s~s~dg~i 408 (409)
+.||.||+++-..++..+.+|+-.+ +.++|||- ...||+++.|=++
T Consensus 213 ~~vr~wDir~~r~pl~eL~gh~~AV---------------Rkvk~Sph~~~lLaSasYDmT~ 259 (311)
T KOG0277|consen 213 NLVRGWDIRNLRTPLFELNGHGLAV---------------RKVKFSPHHASLLASASYDMTV 259 (311)
T ss_pred ceEEEEehhhccccceeecCCceEE---------------EEEecCcchhhHhhhccccceE
Confidence 9999999998778899999998876 79999996 4588999998654
No 72
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=5.2e-27 Score=199.69 Aligned_cols=256 Identities=18% Similarity=0.197 Sum_probs=183.3
Q ss_pred CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCce-eeeeeecCCCccccccccc
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY-RYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~~~~~~~~ 110 (409)
...|.++.|++.|..|++.+.....+|+|-++.+.. ++-... +| +-+..-+||.
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~--------e~~KGD--------QYI~Dm~nTKGHi--------- 268 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIV--------EFSKGD--------QYIRDMYNTKGHI--------- 268 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccCCceee--------eeeccc--------hhhhhhhccCCce---------
Confidence 458999999999999888888889999998765531 000000 00 0123346676
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeee-eccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (409)
..++|.+|+| .+...|++++.|+++||||+.+.+.+.. +...
T Consensus 269 ---a~lt~g~whP-~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k--------------------------------- 311 (641)
T KOG0772|consen 269 ---AELTCGCWHP-DNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK--------------------------------- 311 (641)
T ss_pred ---eeeecccccc-CcccceEEecCCCcEEEEecCCchhheeEEeec---------------------------------
Confidence 8999999976 4556899999999999999986543221 1100
Q ss_pred ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (409)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (409)
...+..-+++.++|+|+++.+|+| .||.|.+|+.. ....-..+.+ -..|..
T Consensus 312 -----------------------~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~-~~~v~p~~~v----k~AH~~ 363 (641)
T KOG0772|consen 312 -----------------------PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKG-SRTVRPVMKV----KDAHLP 363 (641)
T ss_pred -----------------------cCCCcccCceeeecCCCcchhhhcccCCceeeeecC-CcccccceEe----eeccCC
Confidence 013455678899999999999999 99999999986 2221111111 255665
Q ss_pred --ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290 269 --VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (409)
Q Consensus 269 --~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~ 346 (409)
.|+++.|+++| ++|++-+.|+++++||++..+.+. ..+.. -+. ..+-+.++|||+.++|++|+
T Consensus 364 g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kkpL---~~~tg---L~t--------~~~~tdc~FSPd~kli~TGt 428 (641)
T KOG0772|consen 364 GQDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKKPL---NVRTG---LPT--------PFPGTDCCFSPDDKLILTGT 428 (641)
T ss_pred CCceeEEEecccc-chhhhccCCCceeeeeccccccch---hhhcC---CCc--------cCCCCccccCCCceEEEecc
Confidence 89999999999 999999999999999999866442 22222 000 23567899999999999873
Q ss_pred -----c--CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 347 -----Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 347 -----~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
. +.+.+||..+ -..+..+......+ ..+.|+|.-+.|..|+.||++
T Consensus 429 S~~~~~~~g~L~f~d~~t-~d~v~ki~i~~aSv---------------v~~~WhpkLNQi~~gsgdG~~ 481 (641)
T KOG0772|consen 429 SAPNGMTAGTLFFFDRMT-LDTVYKIDISTASV---------------VRCLWHPKLNQIFAGSGDGTA 481 (641)
T ss_pred cccCCCCCceEEEEeccc-eeeEEEecCCCceE---------------EEEeecchhhheeeecCCCce
Confidence 1 6799999875 55666655443332 589999998889999999875
No 73
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.9e-27 Score=187.64 Aligned_cols=290 Identities=14% Similarity=0.187 Sum_probs=214.7
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (409)
Q Consensus 29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (409)
.+|.+.|+.++-......+.+++.|.+.+||.++++. ++..+.||.
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~---------------------------CL~~Y~GH~------- 190 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA---------------------------CLATYTGHT------- 190 (481)
T ss_pred cccccceeeehhhcCCcceeecccccceeEEeecccc---------------------------ceeeecccc-------
Confidence 4599999999998888899999999999999999887 678899999
Q ss_pred cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeee----------eccCCC----cc-cc-----------
Q 015290 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI----------KEMDHF----PF-VS----------- 162 (409)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~----------~~~~~~----~~-~~----------- 162 (409)
+.|++|.| ++.+.++++++.|++..||...-.-.... .+.... +. ..
T Consensus 191 -----GSVNsikf--h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRv 263 (481)
T KOG0300|consen 191 -----GSVNSIKF--HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRV 263 (481)
T ss_pred -----cceeeEEe--ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeee
Confidence 99999999 57888999999999999997321100000 000000 00 00
Q ss_pred -cccccccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCe
Q 015290 163 -SENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR 240 (409)
Q Consensus 163 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~ 240 (409)
-..+....+.+..+.|-..+.-+..++. |.+-.+||+++ +..+..+ .+|....+.+.-+|..++++++ .|.+
T Consensus 264 Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSW--DRTAnlwDVEt---ge~v~~L-tGHd~ELtHcstHptQrLVvTsSrDtT 337 (481)
T KOG0300|consen 264 PLMRLTGHRAVVSACDWLAGGQQMVTASW--DRTANLWDVET---GEVVNIL-TGHDSELTHCSTHPTQRLVVTSSRDTT 337 (481)
T ss_pred eeeeeeccccceEehhhhcCcceeeeeec--cccceeeeecc---Cceeccc-cCcchhccccccCCcceEEEEeccCce
Confidence 0001111223334444444444455555 77889999988 4555554 8999999999999999999999 9999
Q ss_pred EEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCc
Q 015290 241 INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK 320 (409)
Q Consensus 241 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 320 (409)
.++||++..-..+.+ +.+|...|+++.|..+ ..+++|+.|.+|++||+++.... +..+..
T Consensus 338 FRLWDFReaI~sV~V-------FQGHtdtVTS~vF~~d--d~vVSgSDDrTvKvWdLrNMRsp---lATIRt-------- 397 (481)
T KOG0300|consen 338 FRLWDFREAIQSVAV-------FQGHTDTVTSVVFNTD--DRVVSGSDDRTVKVWDLRNMRSP---LATIRT-------- 397 (481)
T ss_pred eEeccchhhcceeee-------ecccccceeEEEEecC--CceeecCCCceEEEeeeccccCc---ceeeec--------
Confidence 999999944455555 7999999999999987 47899999999999999985432 344444
Q ss_pred ccccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEe-----cccCcccccccccCCCCccceeeEEEcC
Q 015290 321 SFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK-----IHEHLRPKLCDLYNNDSIFDKFECSVSG 394 (409)
Q Consensus 321 ~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~sp 394 (409)
..+++.++.+..+..+|.--| ..|++||+. |.-+..++ +|...+ .+++|..
T Consensus 398 ------dS~~NRvavs~g~~iIAiPhDNRqvRlfDln--G~RlaRlPrtsRqgHrRMV---------------~c~AW~e 454 (481)
T KOG0300|consen 398 ------DSPANRVAVSKGHPIIAIPHDNRQVRLFDLN--GNRLARLPRTSRQGHRRMV---------------TCCAWLE 454 (481)
T ss_pred ------CCccceeEeecCCceEEeccCCceEEEEecC--CCccccCCcccccccceee---------------eeeeccc
Confidence 468999999988888888877 999999996 55554443 566554 6899986
Q ss_pred CC--CeEEEcccCCCC
Q 015290 395 DG--LHFATGSYRRDN 408 (409)
Q Consensus 395 dg--~~l~s~s~dg~i 408 (409)
+- .-|++|+.|..+
T Consensus 455 ehp~cnLftcGFDR~v 470 (481)
T KOG0300|consen 455 EHPACNLFTCGFDRMV 470 (481)
T ss_pred cCccccccccccccee
Confidence 54 347788888754
No 74
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=4.7e-26 Score=185.96 Aligned_cols=258 Identities=17% Similarity=0.238 Sum_probs=183.4
Q ss_pred cceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCce
Q 015290 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY 91 (409)
Q Consensus 12 ~~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (409)
..|+..+ ++ ......+|++.|+++.|+-||.+||||+.+|.|+||+..++..
T Consensus 89 flW~~~~--ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~------------------------- 140 (399)
T KOG0296|consen 89 FLWDIST--GE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE------------------------- 140 (399)
T ss_pred EEEEccC--Cc-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce-------------------------
Confidence 3466655 22 4566777999999999999999999999999999999998874
Q ss_pred eeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCccccccccccccc
Q 015290 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (409)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (409)
...+..-- +.|.-+.|| |.+..|+.|+.||.+-+|.+.++...+++..+..+
T Consensus 141 --~~~~~~e~------------~dieWl~WH--p~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~------------ 192 (399)
T KOG0296|consen 141 --QWKLDQEV------------EDIEWLKWH--PRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP------------ 192 (399)
T ss_pred --EEEeeccc------------CceEEEEec--ccccEEEeecCCCcEEEEECCCcceeeEecCCCCC------------
Confidence 12222222 567788995 78999999999999999999986555554432221
Q ss_pred CceeccCCCCCceeecccccccceeEEEecCCcccc----------------------------------------eeee
Q 015290 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA----------------------------------------RCQK 211 (409)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------------------------------------~~~~ 211 (409)
+-...+.|++..+..+.. |++|++|+..+.... +.+.
T Consensus 193 -ct~G~f~pdGKr~~tgy~--dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 193 -CTCGEFIPDGKRILTGYD--DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN 269 (399)
T ss_pred -cccccccCCCceEEEEec--CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence 222233444555555554 889999998752210 0011
Q ss_pred ee-------ccccccceeEEEeCC---CCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCC
Q 015290 212 VY-------PHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 280 (409)
Q Consensus 212 ~~-------~~~~~~~v~~l~~~~---~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 280 (409)
.+ ...+...+.++.+.| .-.+.|+| -||+|.|||+. ...... .-.|...|..+.|-+ .
T Consensus 270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a-~~~~R~--------~c~he~~V~~l~w~~-t- 338 (399)
T KOG0296|consen 270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLA-ASTLRH--------ICEHEDGVTKLKWLN-T- 338 (399)
T ss_pred ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecc-cchhhe--------eccCCCceEEEEEcC-c-
Confidence 00 001222233333333 34567778 89999999998 332222 345888899999999 4
Q ss_pred CEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEcc
Q 015290 281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIR 356 (409)
Q Consensus 281 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~ 356 (409)
.+|++++.+|.|+.||.|+|++. .. +.+|...|.+++++|+.++++++++ ++.+|++..
T Consensus 339 ~~l~t~c~~g~v~~wDaRtG~l~----~~-------------y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 339 DYLLTACANGKVRQWDARTGQLK----FT-------------YTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred chheeeccCceEEeeeccccceE----EE-------------EecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 79999999999999999999752 22 3567889999999999999999986 999999864
No 75
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.7e-25 Score=204.17 Aligned_cols=212 Identities=11% Similarity=0.119 Sum_probs=153.1
Q ss_pred cccCCCcEEEEEECCC-CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290 28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~~-~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (409)
..+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++... ... ...++..+.+|.
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~------~~~-------------i~~p~~~L~gH~----- 125 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES------VKE-------------IKDPQCILKGHK----- 125 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc------ccc-------------cccceEEeecCC-----
Confidence 4459999999999996 789999999999999999764310 000 011345678888
Q ss_pred cccceeccceEEEEEEecCCCCE-EEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290 107 LKSLEIEEKINRVRWCAAPNGSM-FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (409)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (409)
..|.+++| +|++.. |++++.|++|++||+.+++....
T Consensus 126 -------~~V~sVaf--~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~--------------------------------- 163 (568)
T PTZ00420 126 -------KKISIIDW--NPMNYYIMCSSGFDSFVNIWDIENEKRAFQ--------------------------------- 163 (568)
T ss_pred -------CcEEEEEE--CCCCCeEEEEEeCCCeEEEEECCCCcEEEE---------------------------------
Confidence 89999999 577765 57899999999999987754321
Q ss_pred ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (409)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~ 264 (409)
..|...|.+++|+|+|.+|+++ .|+.|+|||++ .+..+.. +.
T Consensus 164 -----------------------------i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~R-sg~~i~t-------l~ 206 (568)
T PTZ00420 164 -----------------------------INMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR-KQEIASS-------FH 206 (568)
T ss_pred -----------------------------EecCCcEEEEEECCCCCEEEEEecCCEEEEEECC-CCcEEEE-------Ee
Confidence 1244678999999999999998 99999999999 6666655 56
Q ss_pred CccCceEE-----EEEeCCCCCEEEEEeCCC----eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEe
Q 015290 265 DLTEVITS-----AEFHPIYCNLLAYSSSRG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (409)
Q Consensus 265 ~~~~~v~~-----~~~~p~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 335 (409)
+|.+.+.+ ..|++++ .+|++++.|+ .|+|||+++.... +..+.. ..+.+.+.....
T Consensus 207 gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~p---l~~~~l-----------d~~~~~L~p~~D 271 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTSA---LVTMSI-----------DNASAPLIPHYD 271 (568)
T ss_pred cccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCCc---eEEEEe-----------cCCccceEEeee
Confidence 77765433 3355888 8888877664 7999999863221 222222 111233333444
Q ss_pred ccCCCEEEEee-cCeEEEEEccC
Q 015290 336 ANDGQHLLSRD-YMNLKLWDIRM 357 (409)
Q Consensus 336 s~~g~~l~sg~-~~~v~iwd~~~ 357 (409)
.++|.++++|. |+.|++|++..
T Consensus 272 ~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 272 ESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred CCCCCEEEEEECCCeEEEEEccC
Confidence 55688888885 69999999975
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.5e-27 Score=197.88 Aligned_cols=234 Identities=18% Similarity=0.288 Sum_probs=186.2
Q ss_pred CCcEEEEEECCCCC-EEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 32 VDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 32 ~~~v~~v~~~~~~~-~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
.+.|++++|+|... -+|+.+. -.+.||+..+... ..++..-.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~---------------------------~k~~srFk--------- 68 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSV---------------------------RKTFSRFK--------- 68 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhh---------------------------hhhHHhhc---------
Confidence 58999999999443 3555553 4799999887653 11222222
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
..|.++.| -.||++|++|...|.|+++|..+....+.
T Consensus 69 ---~~v~s~~f--R~DG~LlaaGD~sG~V~vfD~k~r~iLR~-------------------------------------- 105 (487)
T KOG0310|consen 69 ---DVVYSVDF--RSDGRLLAAGDESGHVKVFDMKSRVILRQ-------------------------------------- 105 (487)
T ss_pred ---cceeEEEe--ecCCeEEEccCCcCcEEEeccccHHHHHH--------------------------------------
Confidence 78999999 58999999999999999999665332221
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCe-EEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (409)
+ .+|+.++..+.|+|+++. +++| +|+.+++||+. +...... +.+|.+
T Consensus 106 ----------------------~-~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s-~a~v~~~-------l~~htD 154 (487)
T KOG0310|consen 106 ----------------------L-YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS-TAYVQAE-------LSGHTD 154 (487)
T ss_pred ----------------------H-hhccCceeEEEecccCCeEEEecCCCceEEEEEcC-CcEEEEE-------ecCCcc
Confidence 2 789999999999997655 5567 88999999998 4443222 789999
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecC
Q 015290 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM 348 (409)
Q Consensus 269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~ 348 (409)
.|.+.+|+|..+.++++||.||.|++||++.... ...+. .|..+|..+.+-|.|..+|+++.+
T Consensus 155 YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-----~v~el------------nhg~pVe~vl~lpsgs~iasAgGn 217 (487)
T KOG0310|consen 155 YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS-----RVVEL------------NHGCPVESVLALPSGSLIASAGGN 217 (487)
T ss_pred eeEeeccccCCCeEEEecCCCceEEEEEeccCCc-----eeEEe------------cCCCceeeEEEcCCCCEEEEcCCC
Confidence 9999999998868999999999999999998531 22222 236799999999999999999989
Q ss_pred eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 349 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
.|++||+.++++.+..+..|...+ +|+++..++..|++||-||.|
T Consensus 218 ~vkVWDl~~G~qll~~~~~H~KtV---------------TcL~l~s~~~rLlS~sLD~~V 262 (487)
T KOG0310|consen 218 SVKVWDLTTGGQLLTSMFNHNKTV---------------TCLRLASDSTRLLSGSLDRHV 262 (487)
T ss_pred eEEEEEecCCceehhhhhcccceE---------------EEEEeecCCceEeecccccce
Confidence 999999987677777777788776 799999999999999999976
No 77
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=8.1e-27 Score=185.68 Aligned_cols=200 Identities=19% Similarity=0.291 Sum_probs=172.8
Q ss_pred eeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccC
Q 015290 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (409)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (409)
+...+.+|+ +.|+.+.| +|+|.+|++++.|..|.+|++.......
T Consensus 39 p~m~l~gh~------------geI~~~~F--~P~gs~~aSgG~Dr~I~LWnv~gdceN~--------------------- 83 (338)
T KOG0265|consen 39 PIMLLPGHK------------GEIYTIKF--HPDGSCFASGGSDRAIVLWNVYGDCENF--------------------- 83 (338)
T ss_pred hhhhcCCCc------------ceEEEEEE--CCCCCeEeecCCcceEEEEeccccccce---------------------
Confidence 455678888 99999999 6899999999999999999976432111
Q ss_pred ceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCc
Q 015290 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ 251 (409)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~ 251 (409)
.. +++|.+.|..+.|.+|+..++++ .|.+++.||.+ +++
T Consensus 84 --------------------------------------~~-lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~-tG~ 123 (338)
T KOG0265|consen 84 --------------------------------------WV-LKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE-TGK 123 (338)
T ss_pred --------------------------------------ee-eccccceeEeeeeccCCCEEEEecCCceEEEEecc-cce
Confidence 11 26899999999999999999999 99999999999 777
Q ss_pred eeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccccee
Q 015290 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (409)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 331 (409)
..+. +.+|...|+++.-+..|+.++.+++.|+++++||+|+... +++++. ...++
T Consensus 124 ~~rk-------~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~----~~t~~~--------------kyqlt 178 (338)
T KOG0265|consen 124 RIRK-------HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA----IKTFEN--------------KYQLT 178 (338)
T ss_pred eeeh-------hccccceeeecCccccCCeEEEecCCCceEEEEeecccch----hhcccc--------------ceeEE
Confidence 7765 7899999999997777878999999999999999998653 355544 46899
Q ss_pred eeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 332 DIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 332 ~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
++.|..++..+.+|+ |+.|++||++. ...+..+.||.+.+ +.+..+|+|.++.+-+.|.++
T Consensus 179 Av~f~d~s~qv~sggIdn~ikvWd~r~-~d~~~~lsGh~DtI---------------t~lsls~~gs~llsnsMd~tv 240 (338)
T KOG0265|consen 179 AVGFKDTSDQVISGGIDNDIKVWDLRK-NDGLYTLSGHADTI---------------TGLSLSRYGSFLLSNSMDNTV 240 (338)
T ss_pred EEEecccccceeeccccCceeeecccc-CcceEEeecccCce---------------eeEEeccCCCccccccccceE
Confidence 999999999999987 69999999986 88999999999987 799999999999999999875
No 78
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.9e-25 Score=203.94 Aligned_cols=230 Identities=18% Similarity=0.275 Sum_probs=160.4
Q ss_pred EecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceEEEEEEecCC-CC
Q 015290 50 GDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GS 128 (409)
Q Consensus 50 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~-~~ 128 (409)
|+.++.|++|+..... .+..+.+|. +.|.+++| +|+ +.
T Consensus 50 GG~~gvI~L~~~~r~~---------------------------~v~~L~gH~------------~~V~~laf--sP~~~~ 88 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP---------------------------PVIKLKGHT------------SSILDLQF--NPCFSE 88 (568)
T ss_pred CCceeEEEeeecCCCc---------------------------eEEEEcCCC------------CCEEEEEE--cCCCCC
Confidence 5567788888865432 466789999 89999999 565 78
Q ss_pred EEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCCcccce
Q 015290 129 MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHAR 208 (409)
Q Consensus 129 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 208 (409)
+|++|+.|++|++||+.++....... ..
T Consensus 89 lLASgS~DgtIrIWDi~t~~~~~~~i----------------------------------------------------~~ 116 (568)
T PTZ00420 89 ILASGSEDLTIRVWEIPHNDESVKEI----------------------------------------------------KD 116 (568)
T ss_pred EEEEEeCCCeEEEEECCCCCcccccc----------------------------------------------------cc
Confidence 99999999999999997642110000 01
Q ss_pred eeeeeccccccceeEEEeCCCCCeE-EEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEE
Q 015290 209 CQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 286 (409)
Q Consensus 209 ~~~~~~~~~~~~v~~l~~~~~~~~l-~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 286 (409)
++..+ .+|...|.+++|+|++..+ +++ .|++|++||++ .+..... +. |...|.+++|+|+| .+|+++
T Consensus 117 p~~~L-~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~-tg~~~~~-------i~-~~~~V~SlswspdG-~lLat~ 185 (568)
T PTZ00420 117 PQCIL-KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE-NEKRAFQ-------IN-MPKKLSSLKWNIKG-NLLSGT 185 (568)
T ss_pred ceEEe-ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC-CCcEEEE-------Ee-cCCcEEEEEECCCC-CEEEEE
Confidence 11222 6799999999999998765 677 99999999999 5544433 22 45679999999999 999999
Q ss_pred eCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c----CeEEEEEccCCCcc
Q 015290 287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y----MNLKLWDIRMDSTP 361 (409)
Q Consensus 287 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~----~~v~iwd~~~~~~~ 361 (409)
+.|+.|+|||+++++. +..+..|..... ...++...|++++.+|++++ + +.|+|||++...++
T Consensus 186 s~D~~IrIwD~Rsg~~----i~tl~gH~g~~~--------s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p 253 (568)
T PTZ00420 186 CVGKHMHIIDPRKQEI----ASSFHIHDGGKN--------TKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA 253 (568)
T ss_pred ecCCEEEEEECCCCcE----EEEEecccCCce--------eEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc
Confidence 9999999999998764 233444311000 01233345678988888754 4 37999999854677
Q ss_pred eEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 362 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
+..+..+..... + ......++|.++++|+.|++|
T Consensus 254 l~~~~ld~~~~~----------L---~p~~D~~tg~l~lsGkGD~tI 287 (568)
T PTZ00420 254 LVTMSIDNASAP----------L---IPHYDESTGLIYLIGKGDGNC 287 (568)
T ss_pred eEEEEecCCccc----------e---EEeeeCCCCCEEEEEECCCeE
Confidence 766654443210 0 122234568899999999876
No 79
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.4e-27 Score=205.37 Aligned_cols=250 Identities=21% Similarity=0.375 Sum_probs=199.9
Q ss_pred cCCCcEE---EEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290 30 QDVDIVS---AIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (409)
Q Consensus 30 ~h~~~v~---~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (409)
+|...|. ++..+. .++||++|+.||.|++|++..... .|+..+...++.|.
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~---------------------~~s~~~~asme~Hs---- 73 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSN---------------------EPSTPYIASMEHHS---- 73 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccC---------------------CcccchhhhhhhhH----
Confidence 5666666 666665 667899999999999999875442 12233566788888
Q ss_pred ccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (409)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (409)
+.|+++..+ .+++.|+++|.|-+|++|+...+..
T Consensus 74 --------DWVNDiiL~--~~~~tlIS~SsDtTVK~W~~~~~~~------------------------------------ 107 (735)
T KOG0308|consen 74 --------DWVNDIILC--GNGKTLISASSDTTVKVWNAHKDNT------------------------------------ 107 (735)
T ss_pred --------hHHhhHHhh--cCCCceEEecCCceEEEeecccCcc------------------------------------
Confidence 899999884 7888999999999999999876531
Q ss_pred ecccccccceeEEEecCCcccceeeeeeccccccceeEEEe-CCCCCeEEEe-cCCeEEEEEccCCCc--eeeeeecC-C
Q 015290 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISN-NSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMK-P 260 (409)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~~~l~~~-~d~~i~lwd~~~~~~--~~~~~~~~-~ 260 (409)
.|..++ ..|.+.|.|+++ .++...+|+| -|+.|.+||+. .+. .+..++.. .
T Consensus 108 ----------------------~c~sti-r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin-~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 108 ----------------------FCMSTI-RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN-TGTATLVASFNNVTV 163 (735)
T ss_pred ----------------------hhHhhh-hcccchheeeeecccCceeEEecCCCccEEEEEcc-Ccchhhhhhcccccc
Confidence 112222 689999999999 7788888999 99999999998 442 22222211 1
Q ss_pred CcCc-CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC
Q 015290 261 SNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (409)
Q Consensus 261 ~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 339 (409)
..+. ++...|++++.++.| ..|++|+..+.|++||.++.+ +.+.. .+|...|..+..++||
T Consensus 164 ~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~------kimkL-----------rGHTdNVr~ll~~dDG 225 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCK------KIMKL-----------RGHTDNVRVLLVNDDG 225 (735)
T ss_pred ccCCCCCccceeeeecCCcc-eEEEecCcccceEEecccccc------ceeee-----------eccccceEEEEEcCCC
Confidence 2234 888999999999999 999999999999999999865 33333 4678899999999999
Q ss_pred CEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 340 QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 340 ~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
..+++++ ||+|++||+.. .+++.++..|...+ +++.-+|+=..+.+|+.||.|
T Consensus 226 t~~ls~sSDgtIrlWdLgq-QrCl~T~~vH~e~V---------------WaL~~~~sf~~vYsG~rd~~i 279 (735)
T KOG0308|consen 226 TRLLSASSDGTIRLWDLGQ-QRCLATYIVHKEGV---------------WALQSSPSFTHVYSGGRDGNI 279 (735)
T ss_pred CeEeecCCCceEEeeeccc-cceeeeEEeccCce---------------EEEeeCCCcceEEecCCCCcE
Confidence 9999885 69999999985 89999999999876 799999999999999999986
No 80
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=6.6e-26 Score=190.42 Aligned_cols=296 Identities=13% Similarity=0.146 Sum_probs=207.2
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeee-cCCCcccccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDYLKS 109 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~ 109 (409)
|.-+|.+|+++|++++.++++.+|+|.=|++.++... +...+... + ....+.....- ++|.
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~------~~i~~~~e--v--~k~~~~~~k~~r~~h~-------- 202 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKD------RYIIERDE--V--LKSHGNPLKESRKGHV-------- 202 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCccc------ccccccch--h--hhhccCCCCccccccc--------
Confidence 8889999999999999999999999999999988742 00000000 0 00011111111 3666
Q ss_pred ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (409)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (409)
..|.+++. ++||++|++|+.|..|.||+..+.+.+.....+ ...+.++.|.......+++ +
T Consensus 203 ----keil~~av--S~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~gh-r~~V~~L~fr~gt~~lys~------------s 263 (479)
T KOG0299|consen 203 ----KEILTLAV--SSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGH-RGAVSSLAFRKGTSELYSA------------S 263 (479)
T ss_pred ----ceeEEEEE--cCCCcEEEecCCCceEEEecCcccchhhccccc-ccceeeeeeecCccceeee------------e
Confidence 88999999 899999999999999999999988766653322 2233444444443333333 3
Q ss_pred ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (409)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (409)
. |..+++|+++. ...+.++ .+|++.|..+....-++.+.+| .|+++++|++....+.+ +.++.+
T Consensus 264 ~--Drsvkvw~~~~---~s~vetl-yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli---------frg~~~ 328 (479)
T KOG0299|consen 264 A--DRSVKVWSIDQ---LSYVETL-YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI---------FRGGEG 328 (479)
T ss_pred c--CCceEEEehhH---hHHHHHH-hCCccceeeechhcccceEEeccccceeEEEeccccceee---------eeCCCC
Confidence 2 88999999975 2333444 7999999999988777777778 99999999997333333 577888
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccccc-ccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR-DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (409)
Q Consensus 269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~ 347 (409)
.+.+++|-.+ ..|++||.+|.|.+|++...++. .+.. .|...+... -..+..+|++++..|...++|+|+.
T Consensus 329 sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkpl----f~~~~AHgv~~~~~--~~~~~~Witsla~i~~sdL~asGS~ 400 (479)
T KOG0299|consen 329 SIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPL----FTSRLAHGVIPELD--PVNGNFWITSLAVIPGSDLLASGSW 400 (479)
T ss_pred CeeeEEEecc--cceeeccCCceEEEeeecccCce----eEeeccccccCCcc--ccccccceeeeEecccCceEEecCC
Confidence 9999999876 58999999999999999887642 2221 122222110 0112359999999999999999985
Q ss_pred -CeEEEEEccCCC---cceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEc
Q 015290 348 -MNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402 (409)
Q Consensus 348 -~~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~ 402 (409)
|.|++|.+..+- +++..++ -.+.+ .+++|+++|++|++|
T Consensus 401 ~G~vrLW~i~~g~r~i~~l~~ls-~~GfV---------------Nsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 401 SGCVRLWKIEDGLRAINLLYSLS-LVGFV---------------NSLAFSNSGKRIVAG 443 (479)
T ss_pred CCceEEEEecCCccccceeeecc-cccEE---------------EEEEEccCCCEEEEe
Confidence 999999998632 3333343 22222 699999999976655
No 81
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=2.5e-27 Score=200.12 Aligned_cols=246 Identities=13% Similarity=0.199 Sum_probs=190.2
Q ss_pred eeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCC-ceeeeeeccCCCcccccccccccc
Q 015290 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAE 170 (409)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 170 (409)
+.+.++.||. ..|+++.|.| ..+.+|++++.|+.|+||++.. +.+.+.+..+..
T Consensus 205 k~~~~~~gH~------------kgvsai~~fp-~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k------------ 259 (503)
T KOG0282|consen 205 KLSHNLSGHT------------KGVSAIQWFP-KKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRK------------ 259 (503)
T ss_pred hheeeccCCc------------cccchhhhcc-ceeeEEEecCCCceEEEEEEecCcceehhhhcchh------------
Confidence 3456788888 8999999964 4889999999999999999986 556555443322
Q ss_pred cCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccC
Q 015290 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEI 248 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~ 248 (409)
.+..+.++..+..+.++++ |+.+++||+++ ++++..+ .....+.|+.|+|++ +.+++| .|+.|+.||++
T Consensus 260 -~Vrd~~~s~~g~~fLS~sf--D~~lKlwDtET---G~~~~~f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR- 330 (503)
T KOG0282|consen 260 -PVRDASFNNCGTSFLSASF--DRFLKLWDTET---GQVLSRF--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR- 330 (503)
T ss_pred -hhhhhhccccCCeeeeeec--ceeeeeecccc---ceEEEEE--ecCCCceeeecCCCCCcEEEEecCCCcEEEEecc-
Confidence 2334445555555566666 99999999988 6777765 344567899999998 778888 99999999999
Q ss_pred CCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (409)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (409)
.++.++. +..|-+.|..+.|-++| ..+++.+.|+.++||+.+.+... +.... .+..
T Consensus 331 s~kvvqe-------Yd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~i----k~i~~------------~~~h 386 (503)
T KOG0282|consen 331 SGKVVQE-------YDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPI----KNIAD------------PEMH 386 (503)
T ss_pred chHHHHH-------HHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccc----hhhcc------------hhhc
Confidence 7776655 67788999999999999 99999999999999999876432 11111 0123
Q ss_pred ceeeeEeccCCCEEEEee-cCeEEEEEccCC--CcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290 329 SISDIKFANDGQHLLSRD-YMNLKLWDIRMD--STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR 405 (409)
Q Consensus 329 ~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d 405 (409)
...++..+|++.++++-+ ++.|.++.+... ......+++|..+.+. ..+.|||||++|++|+.|
T Consensus 387 smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys-------------~~v~fSpDG~~l~SGdsd 453 (503)
T KOG0282|consen 387 TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS-------------CQVDFSPDGRTLCSGDSD 453 (503)
T ss_pred cCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce-------------eeEEEcCCCCeEEeecCC
Confidence 577899999999999987 599999987531 2345667788766532 389999999999999999
Q ss_pred CCC
Q 015290 406 RDN 408 (409)
Q Consensus 406 g~i 408 (409)
|.+
T Consensus 454 G~v 456 (503)
T KOG0282|consen 454 GKV 456 (503)
T ss_pred ccE
Confidence 976
No 82
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.5e-25 Score=178.72 Aligned_cols=281 Identities=19% Similarity=0.222 Sum_probs=198.6
Q ss_pred CCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290 31 DVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (409)
Q Consensus 31 h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (409)
-.+.|.+++||| ...+++.|+.||+||+|+++..... .-+....|.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~-------------------------~~ka~~~~~-------- 72 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL-------------------------VPKAQQSHD-------- 72 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcc-------------------------cchhhhccC--------
Confidence 368999999999 5566778999999999999874210 113345566
Q ss_pred ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCC--CCCceeec
Q 015290 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP--PSFAHGYH 187 (409)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 187 (409)
++|.+++| +.||..+++|+.|+.+++||+.+++...+... ++.+..+.+. ..-..+++
T Consensus 73 ----~PvL~v~W--sddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~H--------------d~pvkt~~wv~~~~~~cl~T 132 (347)
T KOG0647|consen 73 ----GPVLDVCW--SDDGSKVFSGGCDKQAKLWDLASGQVSQVAAH--------------DAPVKTCHWVPGMNYQCLVT 132 (347)
T ss_pred ----CCeEEEEE--ccCCceEEeeccCCceEEEEccCCCeeeeeec--------------ccceeEEEEecCCCcceeEe
Confidence 99999999 79999999999999999999999977655331 2223333332 23357788
Q ss_pred ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (409)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (409)
|+. |.++++||++... ++.+. .....+.++.. ...+++.+ .++.|.+|+++......+.+ ....
T Consensus 133 GSW--DKTlKfWD~R~~~---pv~t~--~LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~------~SpL 197 (347)
T KOG0647|consen 133 GSW--DKTLKFWDTRSSN---PVATL--QLPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRI------ESPL 197 (347)
T ss_pred ccc--ccceeecccCCCC---eeeee--eccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhh------cCcc
Confidence 888 9999999997533 22221 23344555543 34577788 99999999997332222221 1224
Q ss_pred cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe-
Q 015290 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR- 345 (409)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg- 345 (409)
.-.+++++..++. ..++.|+-+|.+.|..+..+.. +..-.+++|..... . .+.-..|++++|+|.-..|+++
T Consensus 198 k~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~--~~nFtFkCHR~~~~-~---~~~VYaVNsi~FhP~hgtlvTaG 270 (347)
T KOG0647|consen 198 KWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNP--KDNFTFKCHRSTNS-V---NDDVYAVNSIAFHPVHGTLVTAG 270 (347)
T ss_pred cceeeEEEEEecC-CceEeeeecceEEEEecCCCCc--cCceeEEEeccCCC-C---CCceEEecceEeecccceEEEec
Confidence 4568899999998 7779999999999998887532 12245666532111 1 1123579999999987777765
Q ss_pred ecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEc
Q 015290 346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402 (409)
Q Consensus 346 ~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~ 402 (409)
+||+..+||-+. ...+...+.|..++ ++++|+.+|.++|-+
T Consensus 271 sDGtf~FWDkda-r~kLk~s~~~~qpI---------------tcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 271 SDGTFSFWDKDA-RTKLKTSETHPQPI---------------TCCSFNRNGSIFAYA 311 (347)
T ss_pred CCceEEEecchh-hhhhhccCcCCCcc---------------ceeEecCCCCEEEEE
Confidence 689999999875 66777777788876 699999999998854
No 83
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=187.67 Aligned_cols=278 Identities=15% Similarity=0.183 Sum_probs=212.3
Q ss_pred CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (409)
...++++...|....+++|+.|..+.++|....+ .+..|+||.
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q---------------------------~l~~~~Gh~---------- 261 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ---------------------------ILATLKGHT---------- 261 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhh---------------------------hhhhccCcc----------
Confidence 4578899999887889999999999999998776 467899999
Q ss_pred eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (409)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (409)
..|+++.| +++...+++++.|..|++|........... .+.+..+.....++.+.++..++.
T Consensus 262 --kki~~v~~--~~~~~~v~~aSad~~i~vws~~~~s~~~~~-------------~~h~~~V~~ls~h~tgeYllsAs~- 323 (506)
T KOG0289|consen 262 --KKITSVKF--HKDLDTVITASADEIIRVWSVPLSSEPTSS-------------RPHEEPVTGLSLHPTGEYLLSASN- 323 (506)
T ss_pred --eEEEEEEe--ccchhheeecCCcceEEeeccccccCcccc-------------ccccccceeeeeccCCcEEEEecC-
Confidence 89999999 578889999999999999988655432221 123344455556677777777766
Q ss_pred ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (409)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (409)
++...+.|++.......... ...+-.+++.+|||||..|.+| .|+.+++||+. ....... +++|.++|
T Consensus 324 -d~~w~Fsd~~~g~~lt~vs~--~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk-s~~~~a~-------Fpght~~v 392 (506)
T KOG0289|consen 324 -DGTWAFSDISSGSQLTVVSD--ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK-SQTNVAK-------FPGHTGPV 392 (506)
T ss_pred -CceEEEEEccCCcEEEEEee--ccccceeEEeeEcCCceEEeccCCCceEEEEEcC-Ccccccc-------CCCCCCce
Confidence 88888888876433222221 1233458999999999999999 99999999999 4444433 89999999
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCe
Q 015290 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 349 (409)
Q Consensus 271 ~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~ 349 (409)
.+++|+.+| .+|++++.|+.|++||+|.-+. .+.+.. .+ ...+.++.|.+.|+||+.++ +=.
T Consensus 393 k~i~FsENG-Y~Lat~add~~V~lwDLRKl~n----~kt~~l-~~-----------~~~v~s~~fD~SGt~L~~~g~~l~ 455 (506)
T KOG0289|consen 393 KAISFSENG-YWLATAADDGSVKLWDLRKLKN----FKTIQL-DE-----------KKEVNSLSFDQSGTYLGIAGSDLQ 455 (506)
T ss_pred eEEEeccCc-eEEEEEecCCeEEEEEehhhcc----cceeec-cc-----------cccceeEEEcCCCCeEEeecceeE
Confidence 999999999 9999999999999999998653 233333 00 13689999999999999885 356
Q ss_pred EEEEEccC-CCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290 350 LKLWDIRM-DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD 407 (409)
Q Consensus 350 v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~ 407 (409)
|++++-.+ ...++..+..|.+.. +.+.|....++++++|.|..
T Consensus 456 Vy~~~k~~k~W~~~~~~~~~sg~s---------------t~v~Fg~~aq~l~s~smd~~ 499 (506)
T KOG0289|consen 456 VYICKKKTKSWTEIKELADHSGLS---------------TGVRFGEHAQYLASTSMDAI 499 (506)
T ss_pred EEEEecccccceeeehhhhccccc---------------ceeeecccceEEeeccchhh
Confidence 66666332 234566666666443 58999999999999999875
No 84
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=2.1e-26 Score=188.88 Aligned_cols=264 Identities=14% Similarity=0.203 Sum_probs=186.8
Q ss_pred CccccCCCcEEEEEECCCC---CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCc
Q 015290 26 DEELQDVDIVSAIEFDKTG---DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP 102 (409)
Q Consensus 26 ~~~~~h~~~v~~v~~~~~~---~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 102 (409)
....+|.++|.+++|--.. ..|++++.|.++++|..+.++.. .+.....+||.
T Consensus 138 ~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~-----------------------~~~~~~~~GHk- 193 (423)
T KOG0313|consen 138 KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK-----------------------VKALKVCRGHK- 193 (423)
T ss_pred EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh-----------------------hhHHhHhcccc-
Confidence 3445699999988886533 35999999999999999877641 12233456999
Q ss_pred cccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCC--------C---cccccccccccc-
Q 015290 103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDH--------F---PFVSSENTLLAE- 170 (409)
Q Consensus 103 ~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~- 170 (409)
..|.+|+. .++|..+++|+.|.+|+||+..+........... . ..-..+......
T Consensus 194 -----------~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt 260 (423)
T KOG0313|consen 194 -----------RSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT 260 (423)
T ss_pred -----------cceeEEEe--cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc
Confidence 89999999 7999999999999999999943221110000000 0 000001111111
Q ss_pred cCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCC
Q 015290 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS 249 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~ 249 (409)
..+.++.+.+ ...+++++. |.+|+.||+++. .++... .....++++..+|..++|++| .|..|++||.+..
T Consensus 261 ~~Vs~V~w~d-~~v~yS~Sw--DHTIk~WDletg---~~~~~~--~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 261 EPVSSVVWSD-ATVIYSVSW--DHTIKVWDLETG---GLKSTL--TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred cceeeEEEcC-CCceEeecc--cceEEEEEeecc---cceeee--ecCcceeEeecccccceeeecCCCCceeecCCCCC
Confidence 1222233333 566666666 999999999873 333332 244678999999999999999 9999999999954
Q ss_pred CceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccc
Q 015290 250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (409)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (409)
...+-. ..+.+|.+.|.++.|+|..+..|++|+.|+++++||+|+.+- .++. +.+|...
T Consensus 333 ~gs~v~-----~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~-----plyd-----------I~~h~DK 391 (423)
T KOG0313|consen 333 DGSVVS-----QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA-----PLYD-----------IAGHNDK 391 (423)
T ss_pred CCceeE-----EeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC-----ccee-----------eccCCce
Confidence 433322 237899999999999999988999999999999999998652 1222 2456789
Q ss_pred eeeeEeccCCCEEEEee-cCeEEEEEcc
Q 015290 330 ISDIKFANDGQHLLSRD-YMNLKLWDIR 356 (409)
Q Consensus 330 i~~~~~s~~g~~l~sg~-~~~v~iwd~~ 356 (409)
|.++.|.. +.+|++|+ |++|+|+.-.
T Consensus 392 vl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 392 VLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEeccC-CceEEeccCcceEEEeccc
Confidence 99999985 66888887 6999999754
No 85
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=4.3e-25 Score=191.56 Aligned_cols=240 Identities=23% Similarity=0.394 Sum_probs=186.6
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (409)
Q Consensus 29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (409)
..|...+..+.|+|++++|++++.||.|++|++.+++ ....+..|.
T Consensus 48 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~---------------------------~~~~~~~~~------- 93 (289)
T cd00200 48 KGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE---------------------------CVRTLTGHT------- 93 (289)
T ss_pred ecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc---------------------------ceEEEeccC-------
Confidence 3478889999999999999999999999999998754 245567777
Q ss_pred cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (409)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (409)
..|.++.| +++++++++++.|+.|++||+.+++.......+ ...+....+++...+++.+
T Consensus 94 -----~~i~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~ 153 (289)
T cd00200 94 -----SYVSSVAF--SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH-------------TDWVNSVAFSPDGTFVASS 153 (289)
T ss_pred -----CcEEEEEE--cCCCCEEEEecCCCeEEEEECCCcEEEEEeccC-------------CCcEEEEEEcCcCCEEEEE
Confidence 78999999 577888888888999999999876655443311 1122333344445555555
Q ss_pred cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (409)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (409)
. .++.+++||+.. .+++..+ ..|...+.+++|+|+++.++++ .++.|++||++ .+..... +..|.
T Consensus 154 ~--~~~~i~i~d~~~---~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~-------~~~~~ 219 (289)
T cd00200 154 S--QDGTIKLWDLRT---GKCVATL-TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS-TGKCLGT-------LRGHE 219 (289)
T ss_pred c--CCCcEEEEEccc---cccceeE-ecCccccceEEECCCcCEEEEecCCCcEEEEECC-CCceecc-------hhhcC
Confidence 4 378999999975 3444444 5788899999999999999998 89999999998 5555544 45788
Q ss_pred CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (409)
Q Consensus 268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~ 347 (409)
..+.++.|+|++ .++++++.+|.|++||+.+++.. ..+. .|...+.+++|+|++++|++++.
T Consensus 220 ~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~~~~----~~~~-------------~~~~~i~~~~~~~~~~~l~~~~~ 281 (289)
T cd00200 220 NGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGECV----QTLS-------------GHTNSVTSLAWSPDGKRLASGSA 281 (289)
T ss_pred CceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCceeE----EEcc-------------ccCCcEEEEEECCCCCEEEEecC
Confidence 899999999997 89999888999999999875431 2222 33568999999999999999875
Q ss_pred -CeEEEEE
Q 015290 348 -MNLKLWD 354 (409)
Q Consensus 348 -~~v~iwd 354 (409)
+.|++|+
T Consensus 282 d~~i~iw~ 289 (289)
T cd00200 282 DGTIRIWD 289 (289)
T ss_pred CCeEEecC
Confidence 9999996
No 86
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=1.2e-26 Score=180.11 Aligned_cols=209 Identities=19% Similarity=0.308 Sum_probs=173.4
Q ss_pred CCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc
Q 015290 25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (409)
Q Consensus 25 ~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (409)
.+..++|+..|.+++|+.|.++|++|+.+..++|||++..+. +..++.+|.
T Consensus 93 elhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A--------------------------pp~E~~ght--- 143 (334)
T KOG0278|consen 93 ELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA--------------------------PPKEISGHT--- 143 (334)
T ss_pred hhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCC--------------------------CchhhcCCC---
Confidence 455677999999999999999999999999999999987664 456789999
Q ss_pred cccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (409)
Q Consensus 105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (409)
+.|..+.|+ ...+.|++++.|++||+||.+++.......
T Consensus 144 ---------g~Ir~v~wc--~eD~~iLSSadd~tVRLWD~rTgt~v~sL~------------------------------ 182 (334)
T KOG0278|consen 144 ---------GGIRTVLWC--HEDKCILSSADDKTVRLWDHRTGTEVQSLE------------------------------ 182 (334)
T ss_pred ---------CcceeEEEe--ccCceEEeeccCCceEEEEeccCcEEEEEe------------------------------
Confidence 999999997 556688888999999999999987665432
Q ss_pred eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264 (409)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~ 264 (409)
...+|+++.++++|++|.++..+.|.+||.. .-..++.++
T Consensus 183 --------------------------------~~s~VtSlEvs~dG~ilTia~gssV~Fwdak-sf~~lKs~k------- 222 (334)
T KOG0278|consen 183 --------------------------------FNSPVTSLEVSQDGRILTIAYGSSVKFWDAK-SFGLLKSYK------- 222 (334)
T ss_pred --------------------------------cCCCCcceeeccCCCEEEEecCceeEEeccc-cccceeecc-------
Confidence 3456899999999999988888999999998 555555432
Q ss_pred CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE
Q 015290 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (409)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s 344 (409)
-...|.+.+.+|+. ..+++|+.|..++.||..++... ..+ -++|-++|.++.|+|||...|+
T Consensus 223 -~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi----~~~------------nkgh~gpVhcVrFSPdGE~yAs 284 (334)
T KOG0278|consen 223 -MPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEI----GSY------------NKGHFGPVHCVRFSPDGELYAS 284 (334)
T ss_pred -CccccccccccCCC-ceEEecCcceEEEEEeccCCcee----eec------------ccCCCCceEEEEECCCCceeec
Confidence 23568899999998 99999999999999999998752 222 1456789999999999999999
Q ss_pred eec-CeEEEEEccCCCcce
Q 015290 345 RDY-MNLKLWDIRMDSTPV 362 (409)
Q Consensus 345 g~~-~~v~iwd~~~~~~~~ 362 (409)
|+. |+|+||.... ++..
T Consensus 285 GSEDGTirlWQt~~-~~~~ 302 (334)
T KOG0278|consen 285 GSEDGTIRLWQTTP-GKTY 302 (334)
T ss_pred cCCCceEEEEEecC-CCch
Confidence 985 9999999864 5443
No 87
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.8e-25 Score=187.94 Aligned_cols=290 Identities=17% Similarity=0.179 Sum_probs=207.4
Q ss_pred CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (409)
.+.|++|.|+|...+|++|+.||+++||.+++.... .++.+.--.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-------------------------~lqS~~l~~---------- 257 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-------------------------KLQSIHLEK---------- 257 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-------------------------hheeeeecc----------
Confidence 578999999999999999999999999999877642 222222222
Q ss_pred eccceEEEEEEecCCCC-EEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 112 IEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 112 ~~~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
.+|.+..| .|+|+ .+++++....++.||+.+.+..++....... ....-...-++.+.+++..+.
T Consensus 258 --fPi~~a~f--~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e----------~~~~e~FeVShd~~fia~~G~ 323 (514)
T KOG2055|consen 258 --FPIQKAEF--APNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVE----------EKSMERFEVSHDSNFIAIAGN 323 (514)
T ss_pred --Cccceeee--cCCCceEEEecccceEEEEeeccccccccccCCCCcc----------cchhheeEecCCCCeEEEccc
Confidence 68999999 58998 8999999999999999988776654322111 111111222334445555444
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (409)
.|.|.+....+. +.+..+ .-.+.|..++|+.+++.|+++ .+|.|.+||++ ...+++.+ .....-.
T Consensus 324 --~G~I~lLhakT~---eli~s~--KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~-~~~~~~rf------~D~G~v~ 389 (514)
T KOG2055|consen 324 --NGHIHLLHAKTK---ELITSF--KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLR-QNSCLHRF------VDDGSVH 389 (514)
T ss_pred --CceEEeehhhhh---hhhhee--eeccEEeeEEEecCCcEEEEEcCCceEEEEecC-CcceEEEE------eecCccc
Confidence 777877776552 333332 245778999999999988887 99999999999 55666654 1222223
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec--
Q 015290 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-- 347 (409)
Q Consensus 270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-- 347 (409)
-++++.++++ .+||+||..|.|.|||..+-.. ...|.+...+..-...|++++|+||+++||.++.
T Consensus 390 gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~-----------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~ 457 (514)
T KOG2055|consen 390 GTSLCISLNG-SYLATGSDSGIVNIYDGNSCFA-----------STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK 457 (514)
T ss_pred eeeeeecCCC-ceEEeccCcceEEEeccchhhc-----------cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc
Confidence 4678888999 9999999999999999765211 1123333334444678999999999999998763
Q ss_pred -CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCCC
Q 015290 348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDNG 409 (409)
Q Consensus 348 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i~ 409 (409)
..+|+-.+.+ ......++.....+ -.|+|++|||.|.+||.|..+|.|.
T Consensus 458 knalrLVHvPS-~TVFsNfP~~n~~v------------g~vtc~aFSP~sG~lAvGNe~grv~ 507 (514)
T KOG2055|consen 458 KNALRLVHVPS-CTVFSNFPTSNTKV------------GHVTCMAFSPNSGYLAVGNEAGRVH 507 (514)
T ss_pred ccceEEEeccc-eeeeccCCCCCCcc------------cceEEEEecCCCceEEeecCCCcee
Confidence 8899999874 55555565544432 2348999999999999999999863
No 88
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=4.9e-26 Score=191.09 Aligned_cols=258 Identities=16% Similarity=0.219 Sum_probs=186.3
Q ss_pred ccCCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290 29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (409)
Q Consensus 29 ~~h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (409)
+.|.+.|+.+.+-| +...+|+++..+.|.|||......... ...+.++-..+.||+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~-----------------~~~~~~Pdl~L~gH~------ 177 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK-----------------ASGECRPDLRLKGHE------ 177 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc-----------------ccccCCCceEEEeec------
Confidence 34899999999999 456778888999999999875432100 000223445688998
Q ss_pred ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (409)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
+.=.++.|.+ ...-.|++++.|++|++||+........
T Consensus 178 ------~eg~glsWn~-~~~g~Lls~~~d~~i~lwdi~~~~~~~~----------------------------------- 215 (422)
T KOG0264|consen 178 ------KEGYGLSWNR-QQEGTLLSGSDDHTICLWDINAESKEDK----------------------------------- 215 (422)
T ss_pred ------cccccccccc-ccceeEeeccCCCcEEEEeccccccCCc-----------------------------------
Confidence 5577899964 3444899999999999999976532100
Q ss_pred ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCC-eEEEe-cCCeEEEEEccC-CCceeeeeecCCCcCc
Q 015290 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEI-SDQCFNIVDMKPSNMD 264 (409)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~lwd~~~-~~~~~~~~~~~~~~~~ 264 (409)
...+... +.+|...|..++|++... .++++ .|+.+.|||++. ..++... ..
T Consensus 216 ------------------~~~p~~~-~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~-------~~ 269 (422)
T KOG0264|consen 216 ------------------VVDPKTI-FSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHS-------VK 269 (422)
T ss_pred ------------------cccceEE-eecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccc-------cc
Confidence 0012222 389999999999999754 45556 999999999994 2222222 68
Q ss_pred CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC-EEE
Q 015290 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLL 343 (409)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~ 343 (409)
+|.+.|.+++|+|-+..+||+||.|++|.+||+|+-..+ +.. +.+|...|.++.|||... .||
T Consensus 270 ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~---lh~-------------~e~H~dev~~V~WSPh~etvLA 333 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP---LHT-------------FEGHEDEVFQVEWSPHNETVLA 333 (422)
T ss_pred ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC---cee-------------ccCCCcceEEEEeCCCCCceeE
Confidence 899999999999998789999999999999999985421 222 455688999999999864 566
Q ss_pred Eee-cCeEEEEEccCCCc-------------ceEEEecccCcccccccccCCCCccceeeEEEcCCCCe-EEEcccCCCC
Q 015290 344 SRD-YMNLKLWDIRMDST-------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FATGSYRRDN 408 (409)
Q Consensus 344 sg~-~~~v~iwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-l~s~s~dg~i 408 (409)
+++ |+.+.+||+..-++ ++..-.||...+ ..+.|+|+..+ |+|.++|+.+
T Consensus 334 SSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV---------------~DfsWnp~ePW~I~SvaeDN~L 398 (422)
T KOG0264|consen 334 SSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKV---------------SDFSWNPNEPWTIASVAEDNIL 398 (422)
T ss_pred ecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccc---------------ccccCCCCCCeEEEEecCCceE
Confidence 554 69999999975222 233444555543 69999998775 6678888653
No 89
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.2e-25 Score=170.73 Aligned_cols=234 Identities=17% Similarity=0.217 Sum_probs=187.3
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (409)
Q Consensus 29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (409)
.+|...|..++.+.|...|++|+.|..+.+||+.+++ ..+.|++|.
T Consensus 56 sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk---------------------------v~Rr~rgH~------- 101 (307)
T KOG0316|consen 56 SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK---------------------------VDRRFRGHL------- 101 (307)
T ss_pred cCCCceeeeccccccccccccCCCCceEEEEEcccCe---------------------------eeeeccccc-------
Confidence 3488999999999999999999999999999999998 478899999
Q ss_pred cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (409)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (409)
+.|+.++| +.+...+++|+.|.++++||.+....
T Consensus 102 -----aqVNtV~f--NeesSVv~SgsfD~s~r~wDCRS~s~--------------------------------------- 135 (307)
T KOG0316|consen 102 -----AQVNTVRF--NEESSVVASGSFDSSVRLWDCRSRSF--------------------------------------- 135 (307)
T ss_pred -----ceeeEEEe--cCcceEEEeccccceeEEEEcccCCC---------------------------------------
Confidence 89999999 68889999999999999999987643
Q ss_pred cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (409)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (409)
++++.+ ......|.++.++ +..+++| .||+++.||++ .+.... .-..
T Consensus 136 -------------------ePiQil-dea~D~V~Si~v~--~heIvaGS~DGtvRtydiR-~G~l~s---------Dy~g 183 (307)
T KOG0316|consen 136 -------------------EPIQIL-DEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIR-KGTLSS---------DYFG 183 (307)
T ss_pred -------------------Cccchh-hhhcCceeEEEec--ccEEEeeccCCcEEEEEee-cceeeh---------hhcC
Confidence 333333 4556678888875 5678888 99999999999 555442 2234
Q ss_pred CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (409)
Q Consensus 268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~ 347 (409)
.+|++++|++++ +..+.++.|+++++.|-.+|++ ++.+.+|.. ...-..++++.....+++|++
T Consensus 184 ~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGkl----L~sYkGhkn-----------~eykldc~l~qsdthV~sgSE 247 (307)
T KOG0316|consen 184 HPITSVSFSKDG-NCSLASSLDSTLRLLDKETGKL----LKSYKGHKN-----------MEYKLDCCLNQSDTHVFSGSE 247 (307)
T ss_pred CcceeEEecCCC-CEEEEeeccceeeecccchhHH----HHHhccccc-----------ceeeeeeeecccceeEEeccC
Confidence 689999999999 9999999999999999999886 355555321 123345677777789999985
Q ss_pred -CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290 348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR 405 (409)
Q Consensus 348 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d 405 (409)
|.|++||+-. ...+..+..+...+ |.+++++|.-.-|+++...
T Consensus 248 DG~Vy~wdLvd-~~~~sk~~~~~~v~--------------v~dl~~hp~~~~f~~A~~~ 291 (307)
T KOG0316|consen 248 DGKVYFWDLVD-ETQISKLSVVSTVI--------------VTDLSCHPTMDDFITATGH 291 (307)
T ss_pred CceEEEEEecc-ceeeeeeccCCcee--------------EEeeecccCccceeEecCC
Confidence 9999999974 78888888777763 2689999986666555443
No 90
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=9.1e-25 Score=174.82 Aligned_cols=280 Identities=15% Similarity=0.129 Sum_probs=201.7
Q ss_pred CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (409)
.+.|++|.|+|.+..|+++++||++++||+...+. ...-.|.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l----------------------------~~~~~~~---------- 54 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL----------------------------KLKFKHG---------- 54 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh----------------------------hhheecC----------
Confidence 57899999999999999999999999999987653 1112344
Q ss_pred eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (409)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (409)
.++.+.+| .+...+++|+.||.|+.+|+.++....+.. +...+.|+......+.+++..|
T Consensus 55 --~plL~c~F---~d~~~~~~G~~dg~vr~~Dln~~~~~~igt--h~~~i~ci~~~~~~~~vIsgsW------------- 114 (323)
T KOG1036|consen 55 --APLLDCAF---ADESTIVTGGLDGQVRRYDLNTGNEDQIGT--HDEGIRCIEYSYEVGCVISGSW------------- 114 (323)
T ss_pred --Cceeeeec---cCCceEEEeccCceEEEEEecCCcceeecc--CCCceEEEEeeccCCeEEEccc-------------
Confidence 89999999 456689999999999999999886655432 2334455555555555555555
Q ss_pred ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (409)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (409)
|++|++||... ..+...+ .....|.++... ++.|+.| .+..+.+||++......+.- -...+..+
T Consensus 115 -D~~ik~wD~R~---~~~~~~~--d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~r------eS~lkyqt 180 (323)
T KOG1036|consen 115 -DKTIKFWDPRN---KVVVGTF--DQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRR------ESSLKYQT 180 (323)
T ss_pred -CccEEEEeccc---ccccccc--ccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhc------cccceeEE
Confidence 99999999975 1222222 334478887765 6788888 99999999999554444221 23345678
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCe
Q 015290 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 349 (409)
Q Consensus 271 ~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~ 349 (409)
.++++-|++ .=++.+|-||.|.+=.+..........-.|++|....... ....+|++++|+|-.+.+|||+ ||.
T Consensus 181 R~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~----~~~yPVNai~Fhp~~~tfaTgGsDG~ 255 (323)
T KOG1036|consen 181 RCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDT----EIIYPVNAIAFHPIHGTFATGGSDGI 255 (323)
T ss_pred EEEEEecCC-CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCc----eEEEEeceeEeccccceEEecCCCce
Confidence 999999977 7788899999988755554422222224466653322211 1135899999999988999985 699
Q ss_pred EEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEccc
Q 015290 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (409)
Q Consensus 350 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~ 404 (409)
|-+||+.. .+.+..+...+..+ .+++|+.||..||.++.
T Consensus 256 V~~Wd~~~-rKrl~q~~~~~~SI---------------~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 256 VNIWDLFN-RKRLKQLAKYETSI---------------SSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEEccCcc-hhhhhhccCCCCce---------------EEEEeccCCCeEEEEec
Confidence 99999985 77777776665544 48999999999998874
No 91
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=3.9e-25 Score=201.26 Aligned_cols=267 Identities=16% Similarity=0.208 Sum_probs=206.1
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
+...+.+..|. ..++++++.+++|++|+..++.. ....+.||.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~--------------------------i~~~l~GH~--------- 249 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL--------------------------ILTRLVGHF--------- 249 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceE--------------------------EEeeccCCC---------
Confidence 56788888888 56889999999999999988763 345599999
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
+.|.++++ ...+.++++|+.|.++++||..++++...+..+... +.++... ...+..|++
T Consensus 250 ---g~V~~l~~--~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~st-v~~~~~~--------------~~~~~sgs~ 309 (537)
T KOG0274|consen 250 ---GGVWGLAF--PSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSS-VRCLTID--------------PFLLVSGSR 309 (537)
T ss_pred ---CCceeEEE--ecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCce-EEEEEcc--------------CceEeeccC
Confidence 99999999 345779999999999999999999988876643221 1111100 011222333
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (409)
|.+|++|++++ ++++.++ .+|.++|+++..+ +.++++| .|++|++||+. ..+++.. +.+|...
T Consensus 310 --D~tVkVW~v~n---~~~l~l~-~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~-~~~cl~s-------l~gH~~~ 373 (537)
T KOG0274|consen 310 --DNTVKVWDVTN---GACLNLL-RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR-TGKCLKS-------LSGHTGR 373 (537)
T ss_pred --CceEEEEeccC---cceEEEe-ccccccEEEEEec--CCEEEEEecCceEEEEEhh-hceeeee-------ecCCcce
Confidence 88999999985 6777776 6799999999998 7899999 99999999999 8888887 7899999
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cC
Q 015290 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (409)
Q Consensus 270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~ 348 (409)
|+++.+.+. ..+++|+.|+.|++||+++...| +..+.. |..-+..+.+ .+++|++++ |+
T Consensus 374 V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c---~~tl~~-------------h~~~v~~l~~--~~~~Lvs~~aD~ 433 (537)
T KOG0274|consen 374 VYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKC---IHTLQG-------------HTSLVSSLLL--RDNFLVSSSADG 433 (537)
T ss_pred EEEEEecCc--ceEEeeeeccceEeecCCchhhh---hhhhcC-------------Cccccccccc--ccceeEeccccc
Confidence 999988875 68999999999999999987312 344444 3555655444 467899886 69
Q ss_pred eEEEEEccCCCcceEEEecc-cCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 349 NLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 349 ~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
.|++||... ++++..+.++ ...+ +.+++. ...+++++.||++
T Consensus 434 ~Ik~WD~~~-~~~~~~~~~~~~~~v---------------~~l~~~--~~~il~s~~~~~~ 476 (537)
T KOG0274|consen 434 TIKLWDAEE-GECLRTLEGRHVGGV---------------SALALG--KEEILCSSDDGSV 476 (537)
T ss_pred cEEEeeccc-CceeeeeccCCcccE---------------EEeecC--cceEEEEecCCee
Confidence 999999986 8999999884 3433 355554 4567788888765
No 92
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.2e-26 Score=189.75 Aligned_cols=245 Identities=16% Similarity=0.199 Sum_probs=176.0
Q ss_pred ccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (409)
Q Consensus 27 ~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (409)
...+|..+|..+.||||.+||++|+.|..+++||+.++.. ++.+ -.+|.
T Consensus 264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~-------~~~y-------------------~~~~~----- 312 (519)
T KOG0293|consen 264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL-------RHLY-------------------PSGLG----- 312 (519)
T ss_pred eeecccCceEEEEECCCCCeEEecCchHheeeccCCcchh-------hhhc-------------------ccCcC-----
Confidence 3456999999999999999999999999999999999874 1111 12334
Q ss_pred cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (409)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (409)
..+.+.+|+ |||..+++|+.|++|..||+++.....-.... .+ .+....-.+++..+.
T Consensus 313 -------~S~~sc~W~--pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr-~~------------~v~dlait~Dgk~vl 370 (519)
T KOG0293|consen 313 -------FSVSSCAWC--PDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR-DP------------KVHDLAITYDGKYVL 370 (519)
T ss_pred -------CCcceeEEc--cCCceeEecCCCCcEEEecCCcchhhcccccc-cc------------eeEEEEEcCCCcEEE
Confidence 689999994 89999999999999999999865432211100 01 111111122223322
Q ss_pred cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (409)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (409)
... .|..+++++.++...... .....+|+++..+.+++++++. .+..+.+||++ ....+.. +.|
T Consensus 371 ~v~--~d~~i~l~~~e~~~dr~l-----ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~-e~~lv~k-------Y~G 435 (519)
T KOG0293|consen 371 LVT--VDKKIRLYNREARVDRGL-----ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLE-ENKLVRK-------YFG 435 (519)
T ss_pred EEe--cccceeeechhhhhhhcc-----ccccCceeEEEEcCCCcEEEEEcccCeeEEeecc-hhhHHHH-------hhc
Confidence 222 377899998876433322 2355789999999999999999 99999999999 4444433 566
Q ss_pred ccCc--eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC-CEE
Q 015290 266 LTEV--ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHL 342 (409)
Q Consensus 266 ~~~~--v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l 342 (409)
|... +-.-+|--....++++||.|+.|+||+..++++ +.. +.||...|++++|+|.. .++
T Consensus 436 hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl----l~~-------------LsGHs~~vNcVswNP~~p~m~ 498 (519)
T KOG0293|consen 436 HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL----LAV-------------LSGHSKTVNCVSWNPADPEMF 498 (519)
T ss_pred ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCce----eEe-------------ecCCcceeeEEecCCCCHHHh
Confidence 6533 333445433337999999999999999999875 233 45567899999999976 577
Q ss_pred EEeec-CeEEEEEcc
Q 015290 343 LSRDY-MNLKLWDIR 356 (409)
Q Consensus 343 ~sg~~-~~v~iwd~~ 356 (409)
|+|+| |+||||...
T Consensus 499 ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 499 ASASDDGTIRIWGPS 513 (519)
T ss_pred hccCCCCeEEEecCC
Confidence 88886 999999876
No 93
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=2.2e-24 Score=171.54 Aligned_cols=301 Identities=15% Similarity=0.213 Sum_probs=203.8
Q ss_pred CCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeee---eeecCCCccccc
Q 015290 31 DVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK---TEFQSHEPEFDY 106 (409)
Q Consensus 31 h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~h~~~~~~ 106 (409)
|.+.|+++...+ .|+|+++|+.||.|.+||+++...- +-....+ ...++ ..-.+|.
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~--------e~s~li~-------k~~c~v~~~h~~~Hk----- 101 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDY--------EASGLIA-------KHKCIVAKQHENGHK----- 101 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccch--------hhcccee-------heeeeccccCCccce-----
Confidence 899999999998 7999999999999999999865410 0000000 00111 0113444
Q ss_pred cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCC---CCc
Q 015290 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP---SFA 183 (409)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 183 (409)
-.|.++.|.| .|...|.+++.|+++++||.++-+....+++. +.+.+-..++ .-.
T Consensus 102 -------y~iss~~WyP-~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me--------------~~VYshamSp~a~sHc 159 (397)
T KOG4283|consen 102 -------YAISSAIWYP-IDTGMFTSSSFDHTLKVWDTNTLQEAVDFKME--------------GKVYSHAMSPMAMSHC 159 (397)
T ss_pred -------eeeeeeEEee-ecCceeecccccceEEEeecccceeeEEeecC--------------ceeehhhcChhhhcce
Confidence 6899999998 56669999999999999999887765554432 1112212221 123
Q ss_pred eeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEE-Ee-cCCeEEEEEccCCCceeeeeecCC-
Q 015290 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKP- 260 (409)
Q Consensus 184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d~~i~lwd~~~~~~~~~~~~~~~- 260 (409)
.++.|.. +-.|++.|+.. +.+-.++ .+|.+.|.++.|+|..++++ +| .||.|++||++....++.+++...
T Consensus 160 LiA~gtr--~~~VrLCDi~S---Gs~sH~L-sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~ 233 (397)
T KOG4283|consen 160 LIAAGTR--DVQVRLCDIAS---GSFSHTL-SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT 233 (397)
T ss_pred EEEEecC--CCcEEEEeccC---Ccceeee-ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC
Confidence 4444443 66899999977 5555655 89999999999999988765 57 999999999995556777766432
Q ss_pred ------CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeE
Q 015290 261 ------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 334 (409)
Q Consensus 261 ------~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 334 (409)
..-..|.+.|..++|+.++ .++++++.|..+++|+..+|+......... ..+.+..+.-| +.
T Consensus 234 k~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~-----~~n~~~~~~~~---~~--- 301 (397)
T KOG4283|consen 234 KRPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNMESGRNTLREFGPI-----IHNQTTSFAVH---IQ--- 301 (397)
T ss_pred ccCccccccccccceeeeeeecccc-hhhhhccCccceEEeecccCcccccccccc-----cccccccceEE---Ee---
Confidence 1235688999999999999 999999999999999999876422111000 00011111111 11
Q ss_pred eccC-CCEEEEeecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 335 FAND-GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 335 ~s~~-g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
+-+ +.++..-.++.+.++++-. +..+..+..|...+ .+.++.|+=+.+.+|..|++|
T Consensus 302 -~~~s~vfv~~p~~~~lall~~~s-gs~ir~l~~h~k~i---------------~c~~~~~~fq~~~tg~~d~ni 359 (397)
T KOG4283|consen 302 -SMDSDVFVLFPNDGSLALLNLLE-GSFVRRLSTHLKRI---------------NCAAYRPDFEQCFTGDMNGNI 359 (397)
T ss_pred -ecccceEEEEecCCeEEEEEccC-ceEEEeeeccccee---------------eEEeecCchhhhhccccCCcc
Confidence 112 2233333348888888875 78888888885544 478888888888888888775
No 94
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.3e-24 Score=172.35 Aligned_cols=263 Identities=12% Similarity=0.201 Sum_probs=187.2
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (409)
Q Consensus 29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (409)
.+|.+-|+++.|.+-|+.+|+|+.|++|+|||...... .+++....+.|.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-----------------------~W~~Ts~Wrah~------- 59 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-----------------------TWSCTSSWRAHD------- 59 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-----------------------ceEEeeeEEecC-------
Confidence 45899999999999999999999999999999865443 677888899999
Q ss_pred cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (409)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (409)
+.|..|.|.+..-|+.+++|+.|++++||.-........
T Consensus 60 -----~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~------------------------------------ 98 (361)
T KOG2445|consen 60 -----GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAH------------------------------------ 98 (361)
T ss_pred -----CcEEEEEecCccccceEEEEecCCceeeeeecccccccc------------------------------------
Confidence 999999998655689999999999999997642211110
Q ss_pred cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC--CCeEEEe-cCCeEEEEEccCCCceeeeeecC------
Q 015290 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMK------ 259 (409)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~------ 259 (409)
-+-| ..++.+......|+.+.|.|. |-.|+++ .||.++||+.-.... +..+.+.
T Consensus 99 -------~~~W---------v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n-Ls~W~Lq~Ei~~~ 161 (361)
T KOG2445|consen 99 -------GRRW---------VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN-LSQWTLQHEIQNV 161 (361)
T ss_pred -------ccee---------EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc-cccchhhhhhhhc
Confidence 0011 111122567788999999996 6778888 999999999762221 1111111
Q ss_pred CCcCcCccCceEEEEEeCCC--CCEEEEEeCC-----CeEEEEeCCCccccccccccccccccccCCcccccccccceee
Q 015290 260 PSNMDDLTEVITSAEFHPIY--CNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (409)
Q Consensus 260 ~~~~~~~~~~v~~~~~~p~~--~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 332 (409)
......+.....|+.|+|.. +.+||.|+.+ +.+.||....+.. .+.. ...+.+|..+|+.
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r------Kw~k-------va~L~d~~dpI~d 228 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR------KWLK-------VAELPDHTDPIRD 228 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc------eeee-------ehhcCCCCCccee
Confidence 11123455677899999753 2588888766 4788887655421 1111 1224567899999
Q ss_pred eEeccC-C---CEEEEeec-CeEEEEEccCCC-------------------cceEEEecccCcccccccccCCCCcccee
Q 015290 333 IKFAND-G---QHLLSRDY-MNLKLWDIRMDS-------------------TPVATFKIHEHLRPKLCDLYNNDSIFDKF 388 (409)
Q Consensus 333 ~~~s~~-g---~~l~sg~~-~~v~iwd~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 388 (409)
++|.|+ | ..||+++. | |+||+++.-. +.+..+..|...+ +
T Consensus 229 i~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~V---------------W 292 (361)
T KOG2445|consen 229 ISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEV---------------W 292 (361)
T ss_pred eeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCce---------------E
Confidence 999997 2 46788874 7 9999987311 1233344455443 8
Q ss_pred eEEEcCCCCeEEEcccCCCC
Q 015290 389 ECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 389 ~~~~spdg~~l~s~s~dg~i 408 (409)
.+.|.-.|..|++.+.||+|
T Consensus 293 rv~wNmtGtiLsStGdDG~V 312 (361)
T KOG2445|consen 293 RVRWNMTGTILSSTGDDGCV 312 (361)
T ss_pred EEEEeeeeeEEeecCCCcee
Confidence 99999999999999999987
No 95
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.9e-25 Score=175.02 Aligned_cols=245 Identities=18% Similarity=0.265 Sum_probs=186.7
Q ss_pred cccceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCC
Q 015290 10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP 89 (409)
Q Consensus 10 ~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (409)
....|.+.+.|... .|..+|++++.+ +.|+|+|+.|-+|+|||+.....
T Consensus 27 ~s~~~~l~~lF~~~------aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~q----------------------- 75 (362)
T KOG0294|consen 27 DSVKPTLKPLFAFS------AHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQ----------------------- 75 (362)
T ss_pred cccceeeecccccc------ccccceeEEEec--ceeEeccCCCCcEEEEeccchhh-----------------------
Confidence 33457777776542 399999999986 89999999999999999987663
Q ss_pred ceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCccccccccccc
Q 015290 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (409)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (409)
+..+..|. +.|+++.|.+......|++|+.||.|.+|+...-.+..
T Consensus 76 ----lg~ll~Ha------------gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~------------------ 121 (362)
T KOG0294|consen 76 ----LGILLSHA------------GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLK------------------ 121 (362)
T ss_pred ----hcceeccc------------cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEee------------------
Confidence 45677888 99999999542223489999999999999987653322
Q ss_pred ccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccC
Q 015290 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (409)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~ 248 (409)
.+ .+|.+.|+.++.+|.++..++. .|+.+++||+-
T Consensus 122 ------------------------------------------sl-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV- 157 (362)
T KOG0294|consen 122 ------------------------------------------SL-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV- 157 (362)
T ss_pred ------------------------------------------ee-cccccccceeEecCCCceEEEEcCCceeeeehhh-
Confidence 22 7899999999999999988887 99999999998
Q ss_pred CCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (409)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (409)
.++.-...+++ ...+.+.|+|.| .+|+.++.++ |-+|.+.+.++. ..... ..
T Consensus 158 ~Gr~a~v~~L~--------~~at~v~w~~~G-d~F~v~~~~~-i~i~q~d~A~v~----~~i~~--------------~~ 209 (362)
T KOG0294|consen 158 RGRVAFVLNLK--------NKATLVSWSPQG-DHFVVSGRNK-IDIYQLDNASVF----REIEN--------------PK 209 (362)
T ss_pred cCccceeeccC--------CcceeeEEcCCC-CEEEEEeccE-EEEEecccHhHh----hhhhc--------------cc
Confidence 55544443222 233569999999 8777777664 899998886532 22222 13
Q ss_pred ceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEE--EcCCCCeEEEcccC
Q 015290 329 SISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS--VSGDGLHFATGSYR 405 (409)
Q Consensus 329 ~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~spdg~~l~s~s~d 405 (409)
.+.++.|.. +.+|++|.| +.|++||.+. ..++..+.+|...+. ++. -.|++.+|+|+|.|
T Consensus 210 r~l~~~~l~-~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK---------------~i~~~~~~~~~~lvTaSSD 272 (362)
T KOG0294|consen 210 RILCATFLD-GSELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVK---------------DIASYTNPEHEYLVTASSD 272 (362)
T ss_pred cceeeeecC-CceEEEecCCceEEEeccCC-Cccceeeecchhhee---------------eeEEEecCCceEEEEeccC
Confidence 466777764 457777765 9999999875 899999999999863 444 34778999999999
Q ss_pred CCC
Q 015290 406 RDN 408 (409)
Q Consensus 406 g~i 408 (409)
|.|
T Consensus 273 G~I 275 (362)
T KOG0294|consen 273 GFI 275 (362)
T ss_pred ceE
Confidence 987
No 96
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=9.2e-25 Score=183.62 Aligned_cols=248 Identities=18% Similarity=0.220 Sum_probs=178.5
Q ss_pred cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (409)
Q Consensus 30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (409)
.|...|.+++.++||+|||+|+.|..|.||+.++.+ .+..+.+|.
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e---------------------------hv~~~~ghr-------- 244 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE---------------------------HVKVFKGHR-------- 244 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccc---------------------------hhhcccccc--------
Confidence 689999999999999999999999999999999887 466789999
Q ss_pred ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (409)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (409)
+.|.+++| -.....|++++.|++|++|+++..........+.. .++....-.-...+..|.
T Consensus 245 ----~~V~~L~f--r~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-------------~v~~IdaL~reR~vtVGg 305 (479)
T KOG0299|consen 245 ----GAVSSLAF--RKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD-------------GVLGIDALSRERCVTVGG 305 (479)
T ss_pred ----cceeeeee--ecCccceeeeecCCceEEEehhHhHHHHHHhCCcc-------------ceeeechhcccceEEecc
Confidence 99999999 46667899999999999999987655443322211 111111111111122222
Q ss_pred ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC-----
Q 015290 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM----- 263 (409)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~----- 263 (409)
.|.++++|++.. ....+ +.++.+.+-|++|-.+ ..+++| .+|.|.+|++. ..+++.+........
T Consensus 306 --rDrT~rlwKi~e----esqli-frg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~-KKkplf~~~~AHgv~~~~~~ 376 (479)
T KOG0299|consen 306 --RDRTVRLWKIPE----ESQLI-FRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLL-KKKPLFTSRLAHGVIPELDP 376 (479)
T ss_pred --ccceeEEEeccc----cceee-eeCCCCCeeeEEEecc-cceeeccCCceEEEeeec-ccCceeEeeccccccCCccc
Confidence 388999999932 22222 3788999999999754 468888 99999999998 566665543321111
Q ss_pred cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (409)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 343 (409)
..+..+|++++..|.. .++++|+.+|.|++|-+..+-.....+..+.. .+.|++++|+++|++|+
T Consensus 377 ~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~--------------~GfVNsl~f~~sgk~iv 441 (479)
T KOG0299|consen 377 VNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLRAINLLYSLSL--------------VGFVNSLAFSNSGKRIV 441 (479)
T ss_pred cccccceeeeEecccC-ceEEecCCCCceEEEEecCCccccceeeeccc--------------ccEEEEEEEccCCCEEE
Confidence 1233589999999988 99999999999999999887322222222222 46899999999999888
Q ss_pred Eee-c-CeEEEEEc
Q 015290 344 SRD-Y-MNLKLWDI 355 (409)
Q Consensus 344 sg~-~-~~v~iwd~ 355 (409)
+|. . ..+--|-.
T Consensus 442 agiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 442 AGIGKEHRLGRWWC 455 (479)
T ss_pred EecccccccceeeE
Confidence 773 2 44444544
No 97
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1.3e-24 Score=200.92 Aligned_cols=268 Identities=13% Similarity=0.125 Sum_probs=190.9
Q ss_pred cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (409)
...|.+.|+|+.|+|||++||+|+.|+.|.||+..........+.. .-....-.|+.+..+.+|.
T Consensus 65 m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~---------g~~~~vE~wk~~~~l~~H~------ 129 (942)
T KOG0973|consen 65 MDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGST---------GGAKNVESWKVVSILRGHD------ 129 (942)
T ss_pred eccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCccccccc---------ccccccceeeEEEEEecCC------
Confidence 3449999999999999999999999999999998741100000000 0000112678899999999
Q ss_pred ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (409)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
..|..+.| +|++.+|++++.|++|.||+..+.+.......+ .+.+....+.|.+.++++
T Consensus 130 ------~DV~Dv~W--sp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H-------------~s~VKGvs~DP~Gky~AS 188 (942)
T KOG0973|consen 130 ------SDVLDVNW--SPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH-------------QSLVKGVSWDPIGKYFAS 188 (942)
T ss_pred ------Cccceecc--CCCccEEEEecccceEEEEccccceeeeeeecc-------------cccccceEECCccCeeee
Confidence 89999999 899999999999999999999998766665433 234455566777888887
Q ss_pred ccccccceeEEEecCCcccceeeeeecc--ccccceeEEEeCCCCCeEEEe---c--CCeEEEEEccCCCceeeeeecCC
Q 015290 188 LEWTENMATKIANVGNSVHARCQKVYPH--AHDFNINSISNNSDCETFVSA---D--DLRINLWNLEISDQCFNIVDMKP 260 (409)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~---~--d~~i~lwd~~~~~~~~~~~~~~~ 260 (409)
-+. |+++++|++..-...+.+...+. .....+..+.|+|||++|++. . ...+.|.+-. +-..-.
T Consensus 189 qsd--Drtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~-tWk~~~------ 259 (942)
T KOG0973|consen 189 QSD--DRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG-TWKVDK------ 259 (942)
T ss_pred ecC--CceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecC-Cceeee------
Confidence 776 99999999765222222211111 123457789999999999985 2 2356666654 222111
Q ss_pred CcCcCccCceEEEEEeCC--------C----CC----EEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccc
Q 015290 261 SNMDDLTEVITSAEFHPI--------Y----CN----LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (409)
Q Consensus 261 ~~~~~~~~~v~~~~~~p~--------~----~~----~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (409)
.+.+|.+++.+++|+|. | +. .+|+|+.|++|.||.....++......++
T Consensus 260 -~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf-------------- 324 (942)
T KOG0973|consen 260 -DLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF-------------- 324 (942)
T ss_pred -eeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh--------------
Confidence 27899999999999872 1 11 78899999999999986654321111122
Q ss_pred ccccceeeeEeccCCCEEEEee-cCeEEEEEccC
Q 015290 325 EIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM 357 (409)
Q Consensus 325 ~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~ 357 (409)
...|..++|+|||-.|++++ ||+|.+..+..
T Consensus 325 --~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 325 --NKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred --cCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 34899999999998888887 69999999863
No 98
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.3e-23 Score=161.09 Aligned_cols=254 Identities=10% Similarity=0.116 Sum_probs=178.9
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
|.+.|.|.+|+|+|++||+|++|.+|++..+..... ...||..+|.
T Consensus 88 hkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~-----------------------------~~~g~dle~n----- 133 (350)
T KOG0641|consen 88 HKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTC-----------------------------NATGHDLEFN----- 133 (350)
T ss_pred cCccEEEEEecCccCeEEecCCCceEEEEecccccc-----------------------------cccCcceeee-----
Confidence 899999999999999999999999999988775443 2334432211
Q ss_pred eeccceEEEEEEec--CCCCEEEEE-eCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290 111 EIEEKINRVRWCAA--PNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (409)
Q Consensus 111 ~~~~~v~~l~~~~s--~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
.|++.|..++|.-. ..+..|+++ ..|..|++=|...++.......+ .+.++. ..+=++.++++
T Consensus 134 mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sgh-------------tghila-lyswn~~m~~s 199 (350)
T KOG0641|consen 134 MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGH-------------TGHILA-LYSWNGAMFAS 199 (350)
T ss_pred ecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCC-------------cccEEE-EEEecCcEEEc
Confidence 12389999999742 334566665 45677777777666543322111 122222 22223456666
Q ss_pred ccccccceeEEEecCCcccceeeeeeccc---cccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290 188 LEWTENMATKIANVGNSVHARCQKVYPHA---HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (409)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (409)
|+. |.+|++||+.-......+..-+.+ ....|.++++.|.|++|++| .|....+||++ .+.+++. +
T Consensus 200 gsq--dktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir-g~r~iq~-------f 269 (350)
T KOG0641|consen 200 GSQ--DKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR-GGRMIQR-------F 269 (350)
T ss_pred cCC--CceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee-CCceeee-------e
Confidence 665 889999999764332222221111 23578999999999999999 99999999999 7777776 6
Q ss_pred cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (409)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 343 (409)
..|...|.++.|+|.. .++++++.|..|++-|+...-...-++.+ ...|...+..+.|+|..--++
T Consensus 270 ~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla~el~~~v-------------v~ehkdk~i~~rwh~~d~sfi 335 (350)
T KOG0641|consen 270 HPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAHELPIMV-------------VAEHKDKAIQCRWHPQDFSFI 335 (350)
T ss_pred CCCccceeEEEeCCCc-eEEEEecccceEEEeecccchhhcCceEE-------------EEeccCceEEEEecCccceee
Confidence 8899999999999988 99999999999999998764211111111 234577888999999875555
Q ss_pred Eee-cCeEEEEEcc
Q 015290 344 SRD-YMNLKLWDIR 356 (409)
Q Consensus 344 sg~-~~~v~iwd~~ 356 (409)
+.+ |.++.+|-+.
T Consensus 336 sssadkt~tlwa~~ 349 (350)
T KOG0641|consen 336 SSSADKTATLWALN 349 (350)
T ss_pred eccCcceEEEeccC
Confidence 554 6999999763
No 99
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=2e-25 Score=185.06 Aligned_cols=239 Identities=17% Similarity=0.239 Sum_probs=178.3
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
..+.|+++.|.+++++++.++.|+.+++|++...+ ...+|.||+
T Consensus 218 s~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r---------------------------~~~TLsGHt--------- 261 (459)
T KOG0288|consen 218 SLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR---------------------------LRHTLSGHT--------- 261 (459)
T ss_pred cCCCcceeeecCCCceEEeecCCCceeeeeccchh---------------------------hhhhhcccc---------
Confidence 45789999999999999999999999999998766 457889999
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
+.|+++.| ......+++++.|.+|++||+....+.+..-.... ...+.+. ...+.++-+
T Consensus 262 ---dkVt~ak~--~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~------------cnDI~~~----~~~~~SgH~ 320 (459)
T KOG0288|consen 262 ---DKVTAAKF--KLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQ------------CNDIVCS----ISDVISGHF 320 (459)
T ss_pred ---cceeeehh--hccccceeeccccchhhhhhhhhhheecccccccc------------ccceEec----ceeeeeccc
Confidence 89999999 35554599999999999999988766544221100 0000010 122333444
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (409)
|+.||+||+.. ..+.... .-.+.|+++..++++..++++ .|.++.+.|++ +......+.... +. -...
T Consensus 321 --DkkvRfwD~Rs---~~~~~sv--~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlR-t~eI~~~~sA~g--~k-~asD 389 (459)
T KOG0288|consen 321 --DKKVRFWDIRS---ADKTRSV--PLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLR-TKEIRQTFSAEG--FK-CASD 389 (459)
T ss_pred --ccceEEEeccC---CceeeEe--ecCcceeeEeeccCCeEEeeecCCCceeeeecc-cccEEEEeeccc--cc-cccc
Confidence 77899999876 3344433 233589999999999999998 99999999999 555555543221 11 1223
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-C
Q 015290 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 348 (409)
Q Consensus 270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~ 348 (409)
.+.+.|||++ .|+++||.||.|+||++.++++. +.+.. +.. ...|++++|+|.|.+|++++. +
T Consensus 390 wtrvvfSpd~-~YvaAGS~dgsv~iW~v~tgKlE----~~l~~-s~s----------~~aI~s~~W~~sG~~Llsadk~~ 453 (459)
T KOG0288|consen 390 WTRVVFSPDG-SYVAAGSADGSVYIWSVFTGKLE----KVLSL-STS----------NAAITSLSWNPSGSGLLSADKQK 453 (459)
T ss_pred cceeEECCCC-ceeeeccCCCcEEEEEccCceEE----EEecc-CCC----------CcceEEEEEcCCCchhhcccCCc
Confidence 7899999999 99999999999999999998852 33333 100 237999999999999999985 9
Q ss_pred eEEEE
Q 015290 349 NLKLW 353 (409)
Q Consensus 349 ~v~iw 353 (409)
.+.+|
T Consensus 454 ~v~lW 458 (459)
T KOG0288|consen 454 AVTLW 458 (459)
T ss_pred ceEec
Confidence 99998
No 100
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=1.1e-24 Score=183.00 Aligned_cols=228 Identities=16% Similarity=0.248 Sum_probs=173.5
Q ss_pred CccccCCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc
Q 015290 26 DEELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (409)
Q Consensus 26 ~~~~~h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (409)
....+|.+.=+.++|++ ..-+|++|+.|+.|++||+...... .+...+...+.+|+
T Consensus 171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~--------------------~~~~~p~~~~~~h~--- 227 (422)
T KOG0264|consen 171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE--------------------DKVVDPKTIFSGHE--- 227 (422)
T ss_pred eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccC--------------------CccccceEEeecCC---
Confidence 35667888778899999 4457899999999999999865430 11233567789999
Q ss_pred cccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (409)
Q Consensus 105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (409)
..|..++|+| .+...|++++.|+.+.|||++++....
T Consensus 228 ---------~~VeDV~~h~-~h~~lF~sv~dd~~L~iwD~R~~~~~~--------------------------------- 264 (422)
T KOG0264|consen 228 ---------DVVEDVAWHP-LHEDLFGSVGDDGKLMIWDTRSNTSKP--------------------------------- 264 (422)
T ss_pred ---------cceehhhccc-cchhhheeecCCCeEEEEEcCCCCCCC---------------------------------
Confidence 8999999986 566689999999999999999631110
Q ss_pred eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCceeeeeecCCCc
Q 015290 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (409)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~ 262 (409)
... ..+|.+.|+|++|+|-+ ..||+| .|++|.|||+|.-..++..
T Consensus 265 -------------------------~~~-~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~------- 311 (422)
T KOG0264|consen 265 -------------------------SHS-VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHT------- 311 (422)
T ss_pred -------------------------ccc-ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCcee-------
Confidence 111 16899999999999965 556678 8999999999955565555
Q ss_pred CcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCC-cccccccccceeeeEeccCCCE
Q 015290 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS-KSFFTEIIASISDIKFANDGQH 341 (409)
Q Consensus 263 ~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~g~~ 341 (409)
+.+|...|..+.|+|.....||+++.|+.+.+||+..-... +..+....+|.. .-.-.||...|..+.|+|...+
T Consensus 312 ~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e----q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW 387 (422)
T KOG0264|consen 312 FEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE----QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW 387 (422)
T ss_pred ccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccc----cChhhhccCCcceeEEecCcccccccccCCCCCCe
Confidence 89999999999999998889999999999999999763211 111111222222 2223589999999999999877
Q ss_pred EE-Eeec-CeEEEEEcc
Q 015290 342 LL-SRDY-MNLKLWDIR 356 (409)
Q Consensus 342 l~-sg~~-~~v~iwd~~ 356 (409)
++ +.++ +.+.||+..
T Consensus 388 ~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 388 TIASVAEDNILQIWQMA 404 (422)
T ss_pred EEEEecCCceEEEeecc
Confidence 65 4554 999999985
No 101
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=1.6e-24 Score=197.31 Aligned_cols=257 Identities=20% Similarity=0.328 Sum_probs=198.9
Q ss_pred ceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCcee
Q 015290 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR 92 (409)
Q Consensus 13 ~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (409)
.|+..+.+-. .....+|.+.|++++|..-+.+|++|+.|.++++||..+++
T Consensus 232 ~~~~~~~~~i--~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~--------------------------- 282 (537)
T KOG0274|consen 232 LWDLNNGYLI--LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE--------------------------- 282 (537)
T ss_pred EeecccceEE--EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc---------------------------
Confidence 5666554433 22356699999999998878899999999999999998887
Q ss_pred eeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccC
Q 015290 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (409)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (409)
+...+.+|. ..|.++.. ...++++|+.|.+|++|++.++....+... +...|.++...
T Consensus 283 C~~~l~gh~------------stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~-h~~~V~~v~~~----- 340 (537)
T KOG0274|consen 283 CTHSLQGHT------------SSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLLRG-HTGPVNCVQLD----- 340 (537)
T ss_pred EEEEecCCC------------ceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEecc-ccccEEEEEec-----
Confidence 688899999 89999987 455888899999999999999988877664 23323332221
Q ss_pred ceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCC-
Q 015290 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD- 250 (409)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~- 250 (409)
..++.+++. |++|++|++. .++|++.+ .+|...|.++.+.+. ..+++| .|++|++||++ ..
T Consensus 341 ---------~~~lvsgs~--d~~v~VW~~~---~~~cl~sl-~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~-~~~ 403 (537)
T KOG0274|consen 341 ---------EPLLVSGSY--DGTVKVWDPR---TGKCLKSL-SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLR-TKR 403 (537)
T ss_pred ---------CCEEEEEec--CceEEEEEhh---hceeeeee-cCCcceEEEEEecCc-ceEEeeeeccceEeecCC-chh
Confidence 344455554 8899999998 48899988 889999999988765 789999 99999999999 55
Q ss_pred ceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccce
Q 015290 251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (409)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 330 (409)
+++.+ +.+|.+.+..+.+. + +.|++++.|++|++||...++. .+.+..+ |...|
T Consensus 404 ~c~~t-------l~~h~~~v~~l~~~--~-~~Lvs~~aD~~Ik~WD~~~~~~----~~~~~~~------------~~~~v 457 (537)
T KOG0274|consen 404 KCIHT-------LQGHTSLVSSLLLR--D-NFLVSSSADGTIKLWDAEEGEC----LRTLEGR------------HVGGV 457 (537)
T ss_pred hhhhh-------hcCCcccccccccc--c-ceeEeccccccEEEeecccCce----eeeeccC------------CcccE
Confidence 67766 78898888766654 4 7899999999999999988764 2444330 24577
Q ss_pred eeeEeccCCCEEEEeecCeEEEEEccCCCcceEEE
Q 015290 331 SDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATF 365 (409)
Q Consensus 331 ~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~ 365 (409)
..+++. +...|+++.++.+++||+++ +++...+
T Consensus 458 ~~l~~~-~~~il~s~~~~~~~l~dl~~-~~~~~~l 490 (537)
T KOG0274|consen 458 SALALG-KEEILCSSDDGSVKLWDLRS-GTLIRTL 490 (537)
T ss_pred EEeecC-cceEEEEecCCeeEEEeccc-Cchhhhh
Confidence 777776 33444455569999999996 7776655
No 102
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.1e-24 Score=170.18 Aligned_cols=279 Identities=13% Similarity=0.176 Sum_probs=185.6
Q ss_pred EEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceecc
Q 015290 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (409)
Q Consensus 35 v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (409)
-.|+.|++.|.+||+|..||.|.|||+.+.. ..+.+.+|. .
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~---------------------------iar~lsaH~------------~ 66 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR---------------------------IARMLSAHV------------R 66 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc---------------------------hhhhhhccc------------c
Confidence 7899999999999999999999999999765 345688999 8
Q ss_pred ceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccc-cCceeccCCCCCceeeccccccc
Q 015290 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE-KNFMNEHNPPSFAHGYHLEWTEN 193 (409)
Q Consensus 115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 193 (409)
+|.+++| |++|+.|+++|.|..|++||+..+.+.....+. .++....+.+.. ..++.+.. +
T Consensus 67 pi~sl~W--S~dgr~LltsS~D~si~lwDl~~gs~l~rirf~--spv~~~q~hp~k~n~~va~~~--------------~ 128 (405)
T KOG1273|consen 67 PITSLCW--SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD--SPVWGAQWHPRKRNKCVATIM--------------E 128 (405)
T ss_pred ceeEEEe--cCCCCEeeeecCCceeEEEeccCCCceeEEEcc--CccceeeeccccCCeEEEEEe--------------c
Confidence 9999999 899999999999999999999998866554432 222222222211 11111111 0
Q ss_pred ceeEEEecCCcccceeeeeeccc-cccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceE
Q 015290 194 MATKIANVGNSVHARCQKVYPHA-HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (409)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (409)
....+-++.. ....++..-..+ ......+..|.+.|+++++| ..|.+.++|.. +.+++..+.+. ....|.
T Consensus 129 ~sp~vi~~s~-~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~-t~e~vas~rit------s~~~IK 200 (405)
T KOG1273|consen 129 ESPVVIDFSD-PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE-TLECVASFRIT------SVQAIK 200 (405)
T ss_pred CCcEEEEecC-CceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc-hheeeeeeeec------hheeee
Confidence 0111111111 000000000000 11112234588999999999 99999999999 66666653221 135788
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccc--cccceeeeEeccCCCEEEEeec--
Q 015290 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE--IIASISDIKFANDGQHLLSRDY-- 347 (409)
Q Consensus 272 ~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~g~~l~sg~~-- 347 (409)
.+.++..| ..|+.-+.|..||.|+++.--.+.. ...+.+...+.+ ....-.+++||.+|.|+++|+.
T Consensus 201 ~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~~r--------~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~a 271 (405)
T KOG1273|consen 201 QIIVSRKG-RFLIINTSDRVIRTYEISDIDDEGR--------DGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARA 271 (405)
T ss_pred EEEEeccC-cEEEEecCCceEEEEehhhhcccCc--------cCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccc
Confidence 99999999 9999999999999999874110000 000000000110 0234567899999999998874
Q ss_pred CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEc
Q 015290 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402 (409)
Q Consensus 348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~ 402 (409)
..++||.... |.+++.+.|..+.-- ..+.|+|-...+++-
T Consensus 272 HaLYIWE~~~-GsLVKILhG~kgE~l--------------~DV~whp~rp~i~si 311 (405)
T KOG1273|consen 272 HALYIWEKSI-GSLVKILHGTKGEEL--------------LDVNWHPVRPIIASI 311 (405)
T ss_pred eeEEEEecCC-cceeeeecCCchhhe--------------eecccccceeeeeec
Confidence 8999999886 999999988775421 478899988877776
No 103
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.2e-24 Score=194.45 Aligned_cols=217 Identities=18% Similarity=0.238 Sum_probs=165.4
Q ss_pred hccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeec
Q 015290 19 AFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ 98 (409)
Q Consensus 19 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (409)
.|.+...-...+|.+.|.++.||.+ .+|++++.|.+|+||++...+. +..|
T Consensus 356 ~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~C---------------------------L~~F- 406 (712)
T KOG0283|consen 356 VFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKEC---------------------------LKVF- 406 (712)
T ss_pred cccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcce---------------------------eeEE-
Confidence 4455555556679999999999976 4899999999999999986652 3333
Q ss_pred CCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccC
Q 015290 99 SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN 178 (409)
Q Consensus 99 ~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (409)
.|. +-|+||+|+| .|.++|++|+.|+.||||++...+...
T Consensus 407 ~Hn------------dfVTcVaFnP-vDDryFiSGSLD~KvRiWsI~d~~Vv~--------------------------- 446 (712)
T KOG0283|consen 407 SHN------------DFVTCVAFNP-VDDRYFISGSLDGKVRLWSISDKKVVD--------------------------- 446 (712)
T ss_pred ecC------------CeeEEEEecc-cCCCcEeecccccceEEeecCcCeeEe---------------------------
Confidence 344 8999999987 788899999999999999998664432
Q ss_pred CCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeee
Q 015290 179 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD 257 (409)
Q Consensus 179 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~ 257 (409)
| ..-...|++++|.|+|+..++| .+|.+++|+.. ..+......
T Consensus 447 --------------------W---------------~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~-~lk~~~~~~ 490 (712)
T KOG0283|consen 447 --------------------W---------------NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTE-GLKLVSDFH 490 (712)
T ss_pred --------------------e---------------hhhhhhheeEEeccCCceEEEEEeccEEEEEEcc-CCeEEEeee
Confidence 2 2334779999999999999999 99999999998 555444433
Q ss_pred cCC--CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEe
Q 015290 258 MKP--SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (409)
Q Consensus 258 ~~~--~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 335 (409)
+.. ..-..|. .|+.+.|.|..+..++..+.|..|+|||.+..++ +..+.++.. ...-....|
T Consensus 491 I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l----v~KfKG~~n-----------~~SQ~~Asf 554 (712)
T KOG0283|consen 491 IRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL----VHKFKGFRN-----------TSSQISASF 554 (712)
T ss_pred EeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhh----hhhhccccc-----------CCcceeeeE
Confidence 322 1122233 7999999998766677889999999999977654 244443110 123456789
Q ss_pred ccCCCEEEEeec-CeEEEEEcc
Q 015290 336 ANDGQHLLSRDY-MNLKLWDIR 356 (409)
Q Consensus 336 s~~g~~l~sg~~-~~v~iwd~~ 356 (409)
+.||++|+++++ ..|++|+..
T Consensus 555 s~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 555 SSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ccCCCEEEEeecCceEEEEeCC
Confidence 999999999986 999999974
No 104
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4e-23 Score=187.70 Aligned_cols=278 Identities=14% Similarity=0.176 Sum_probs=196.8
Q ss_pred cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (409)
Q Consensus 30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (409)
.|....+.|+|.|+|++|.+++.||.|++|+....... -..+.-+.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~--------------------------P~ti~~~g-------- 56 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE--------------------------PETIDISG-------- 56 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC--------------------------CchhhccC--------
Confidence 48888999999999999999999999999998765210 01111133
Q ss_pred ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (409)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (409)
..|.+++- ++.+|++++.+++|.+|.+.+++...+.. .-.-....+..+.++.+++.|+
T Consensus 57 ----~~v~~ia~----~s~~f~~~s~~~tv~~y~fps~~~~~iL~-------------Rftlp~r~~~v~g~g~~iaags 115 (933)
T KOG1274|consen 57 ----ELVSSIAC----YSNHFLTGSEQNTVLRYKFPSGEEDTILA-------------RFTLPIRDLAVSGSGKMIAAGS 115 (933)
T ss_pred ----ceeEEEee----cccceEEeeccceEEEeeCCCCCccceee-------------eeeccceEEEEecCCcEEEeec
Confidence 67888776 55699999999999999998775442211 0111223344456667777766
Q ss_pred ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc-c
Q 015290 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-T 267 (409)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~-~ 267 (409)
. |-.|++-++.... ..+.+ .+|.++|.++.|+|++++||+. .||.|++||++ .+.+..++..-......- .
T Consensus 116 d--D~~vK~~~~~D~s---~~~~l-rgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~-~~~~~~tl~~v~k~n~~~~s 188 (933)
T KOG1274|consen 116 D--DTAVKLLNLDDSS---QEKVL-RGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ-DGILSKTLTGVDKDNEFILS 188 (933)
T ss_pred C--ceeEEEEeccccc---hheee-cccCCceeeeeEcCCCCEEEEEecCceEEEEEcc-cchhhhhcccCCcccccccc
Confidence 5 7789999887633 33333 7999999999999999999999 99999999999 666655533221111112 4
Q ss_pred CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-
Q 015290 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (409)
Q Consensus 268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~- 346 (409)
..+..++|+|++ -.|+..+.|+.|++|+..+.+.. ..+.. ..+...+..++|+|.|+|||+++
T Consensus 189 ~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~~----f~Lr~-----------~~~ss~~~~~~wsPnG~YiAAs~~ 252 (933)
T KOG1274|consen 189 RICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWELQ----FKLRD-----------KLSSSKFSDLQWSPNGKYIAASTL 252 (933)
T ss_pred ceeeeeeecCCC-CeEEeeccCCeEEEEccCCceeh----eeecc-----------cccccceEEEEEcCCCcEEeeecc
Confidence 567889999998 67777888999999999887642 22222 11234589999999999999998
Q ss_pred cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR 405 (409)
Q Consensus 347 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d 405 (409)
+|.|.|||.++ ...|.... .|.+++|.|++..|-.-..-
T Consensus 253 ~g~I~vWnv~t-------~~~~~~~~-------------~Vc~~aw~p~~n~it~~~~~ 291 (933)
T KOG1274|consen 253 DGQILVWNVDT-------HERHEFKR-------------AVCCEAWKPNANAITLITAL 291 (933)
T ss_pred CCcEEEEeccc-------chhccccc-------------eeEEEecCCCCCeeEEEeec
Confidence 59999999974 11122211 12689999988765443333
No 105
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=2.3e-24 Score=183.14 Aligned_cols=244 Identities=15% Similarity=0.218 Sum_probs=189.1
Q ss_pred CccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (409)
Q Consensus 26 ~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (409)
...+.|..-|.++..+...+++.||+. |.|+|||+...... .++..+..
T Consensus 413 ~~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k------------------------~PvsqLdc------ 461 (705)
T KOG0639|consen 413 INTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK------------------------SPVSQLDC------ 461 (705)
T ss_pred hhhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC------------------------Cccccccc------
Confidence 445669999999999999999999985 67999999754321 01222222
Q ss_pred ccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (409)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (409)
+.-++-|+++.. .+||+.|++|+.-.++.|||+.........++
T Consensus 462 ----l~rdnyiRSckL--~pdgrtLivGGeastlsiWDLAapTprikael------------------------------ 505 (705)
T KOG0639|consen 462 ----LNRDNYIRSCKL--LPDGRTLIVGGEASTLSIWDLAAPTPRIKAEL------------------------------ 505 (705)
T ss_pred ----cCcccceeeeEe--cCCCceEEeccccceeeeeeccCCCcchhhhc------------------------------
Confidence 222267888888 69999999999999999999986543322110
Q ss_pred ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (409)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~ 264 (409)
....-...+++.+||.+..+++ .||.|.|||+. ....++. +.
T Consensus 506 -----------------------------tssapaCyALa~spDakvcFsccsdGnI~vwDLh-nq~~Vrq-------fq 548 (705)
T KOG0639|consen 506 -----------------------------TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH-NQTLVRQ-------FQ 548 (705)
T ss_pred -----------------------------CCcchhhhhhhcCCccceeeeeccCCcEEEEEcc-cceeeec-------cc
Confidence 1112234678999999999998 99999999999 6666665 89
Q ss_pred CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE
Q 015290 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (409)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s 344 (409)
+|.+.+.||.++++| ..|-+|+-|++||.||++.++. +..|. ....|.++..+|.+.+|+.
T Consensus 549 GhtDGascIdis~dG-tklWTGGlDntvRcWDlregrq-------lqqhd-----------F~SQIfSLg~cP~~dWlav 609 (705)
T KOG0639|consen 549 GHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQ-------LQQHD-----------FSSQIFSLGYCPTGDWLAV 609 (705)
T ss_pred CCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhh-------hhhhh-----------hhhhheecccCCCccceee
Confidence 999999999999999 9999999999999999999753 22211 1458999999999999999
Q ss_pred eec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCCC
Q 015290 345 RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDNG 409 (409)
Q Consensus 345 g~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i~ 409 (409)
|-. +.+.|-... +.....+..|+.-+ .++.|.+-|+++++.+.|+.++
T Consensus 610 GMens~vevlh~s--kp~kyqlhlheScV---------------LSlKFa~cGkwfvStGkDnlLn 658 (705)
T KOG0639|consen 610 GMENSNVEVLHTS--KPEKYQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLLN 658 (705)
T ss_pred ecccCcEEEEecC--CccceeecccccEE---------------EEEEecccCceeeecCchhhhh
Confidence 976 888888875 45555666666643 6999999999999999998653
No 106
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.9e-23 Score=164.23 Aligned_cols=234 Identities=18% Similarity=0.226 Sum_probs=178.2
Q ss_pred CCcEEEEEECCCCCEEEEEec--CCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290 32 VDIVSAIEFDKTGDYLAVGDR--GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (409)
+-.|..+.|......++.++. |.+|+..++.+.+ +++.|.||.
T Consensus 56 kyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk---------------------------ylRYF~GH~-------- 100 (311)
T KOG1446|consen 56 KYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK---------------------------YLRYFPGHK-------- 100 (311)
T ss_pred cccccEEEEecCCceEEEccCCCCCceEEEEeecCc---------------------------eEEEcCCCC--------
Confidence 346677777765556666664 7899999998876 789999999
Q ss_pred ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (409)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (409)
..|++|+. +|-+..+++++.|++|++||++..+++-...
T Consensus 101 ----~~V~sL~~--sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~----------------------------------- 139 (311)
T KOG1446|consen 101 ----KRVNSLSV--SPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN----------------------------------- 139 (311)
T ss_pred ----ceEEEEEe--cCCCCeEEecccCCeEEeeEecCCCCceEEe-----------------------------------
Confidence 89999999 6888999999999999999999765543321
Q ss_pred ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCC-CceeeeeecCCCcCcCcc
Q 015290 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMDDLT 267 (409)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~ 267 (409)
...-...+|.|+|-++|++ ..+.|++||++.. +.+..++.+. .+-.
T Consensus 140 ----------------------------~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~----~~~~ 187 (311)
T KOG1446|consen 140 ----------------------------LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT----DNDE 187 (311)
T ss_pred ----------------------------cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC----CCCc
Confidence 1112357899999999999 6669999999954 3455554322 1334
Q ss_pred CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (409)
Q Consensus 268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~ 347 (409)
...+.+.|+|+| ++++.+...+.+++.|.-.|.. ...+..+... ..--...+|+||++++++|++
T Consensus 188 ~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~G~~----~~tfs~~~~~----------~~~~~~a~ftPds~Fvl~gs~ 252 (311)
T KOG1446|consen 188 AEWTDLEFSPDG-KSILLSTNASFIYLLDAFDGTV----KSTFSGYPNA----------GNLPLSATFTPDSKFVLSGSD 252 (311)
T ss_pred cceeeeEEcCCC-CEEEEEeCCCcEEEEEccCCcE----eeeEeeccCC----------CCcceeEEECCCCcEEEEecC
Confidence 568999999999 9888889999999999988864 2344432111 111256889999999999986
Q ss_pred -CeEEEEEccCCCcceEEEecc-cCcccccccccCCCCccceeeEEEcCCCCeEEEccc
Q 015290 348 -MNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (409)
Q Consensus 348 -~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~ 404 (409)
|+|.+|++++ +..+..+.+. ...+ .++.|+|.-.++++++.
T Consensus 253 dg~i~vw~~~t-g~~v~~~~~~~~~~~---------------~~~~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 253 DGTIHVWNLET-GKKVAVLRGPNGGPV---------------SCVRFNPRYAMFVSASS 295 (311)
T ss_pred CCcEEEEEcCC-CcEeeEecCCCCCCc---------------cccccCCceeeeeecCc
Confidence 9999999987 8888888874 4443 58899999888888764
No 107
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=1.9e-24 Score=168.96 Aligned_cols=215 Identities=18% Similarity=0.264 Sum_probs=165.6
Q ss_pred eeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCce
Q 015290 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (409)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (409)
+.+++|. +.|.+|+| +.+|..|++++.|+++++|++...+......
T Consensus 14 r~~~~~~------------~~v~Sv~w--n~~g~~lasgs~dktv~v~n~e~~r~~~~~~-------------------- 59 (313)
T KOG1407|consen 14 RELQGHV------------QKVHSVAW--NCDGTKLASGSFDKTVSVWNLERDRFRKELV-------------------- 59 (313)
T ss_pred HHhhhhh------------hcceEEEE--cccCceeeecccCCceEEEEecchhhhhhhc--------------------
Confidence 4567777 89999999 7999999999999999999998763322111
Q ss_pred eccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCce
Q 015290 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQC 252 (409)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~ 252 (409)
..+|.+.|-.++|+|. ...++++ .|.+|++||++ .+++
T Consensus 60 ---------------------------------------~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r-~~k~ 99 (313)
T KOG1407|consen 60 ---------------------------------------YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR-SGKC 99 (313)
T ss_pred ---------------------------------------ccCCCcchhhheeCCCCCcceEEecCCceEEEEEec-cCcE
Confidence 1688889999999875 5677888 99999999999 6666
Q ss_pred eeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccccccccc-----------------
Q 015290 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE----------------- 315 (409)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~----------------- 315 (409)
...+.. . +.=.-+.|+|+| .+++.++.|..|.+.|.++.+........+..+..
T Consensus 100 ~~~i~~-------~-~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 100 TARIET-------K-GENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred EEEeec-------c-CcceEEEEcCCC-CEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 655321 1 222468899999 99999999999999999885432111111111000
Q ss_pred -------ccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccce
Q 015290 316 -------SHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 387 (409)
Q Consensus 316 -------~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 387 (409)
.-.+...++.|.....++.|+|+|+|+|+|+ |-.+-+||+.. --++..+..+.-++
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E-LiC~R~isRldwpV--------------- 234 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE-LICERCISRLDWPV--------------- 234 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH-hhhheeeccccCce---------------
Confidence 1123445778999999999999999999997 59999999974 67888888888776
Q ss_pred eeEEEcCCCCeEEEcccCCCC
Q 015290 388 FECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 388 ~~~~~spdg~~l~s~s~dg~i 408 (409)
+.+.||.||++||+||+|..|
T Consensus 235 RTlSFS~dg~~lASaSEDh~I 255 (313)
T KOG1407|consen 235 RTLSFSHDGRMLASASEDHFI 255 (313)
T ss_pred EEEEeccCcceeeccCccceE
Confidence 799999999999999999765
No 108
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=7.9e-24 Score=173.77 Aligned_cols=227 Identities=16% Similarity=0.229 Sum_probs=164.4
Q ss_pred cccCCCcEEEEEECCC--CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290 28 ELQDVDIVSAIEFDKT--GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~~--~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (409)
.+.|.+.++.+.-++- ..+.|+=+..|.|+||++..... .+..++ ........+++.++.+|.
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~---------~l~~~~--~~~~~s~~~Pl~t~~ghk---- 211 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLN---------ALSEPG--LEVKDSEFRPLFTFNGHK---- 211 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhh---------hhcCcc--ccccccccCceEEecccC----
Confidence 3447777777777764 45667777899999999864321 111111 111124667888899998
Q ss_pred ccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (409)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (409)
+.=+.|+|.|...| .|++|..-+.|++|...++....-..
T Consensus 212 --------~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~vd~~------------------------------- 251 (440)
T KOG0302|consen 212 --------GEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWKVDQR------------------------------- 251 (440)
T ss_pred --------ccceeeeccccccc-ccccCccccceEeeeeccCceeecCc-------------------------------
Confidence 78899999543344 68888888899999998876543210
Q ss_pred ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (409)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (409)
.+.+|...|-.|+|+|.. ..|+++ .||+|+|||++...+.-.+. .
T Consensus 252 ---------------------------Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~------~ 298 (440)
T KOG0302|consen 252 ---------------------------PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS------T 298 (440)
T ss_pred ---------------------------cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE------e
Confidence 136799999999999975 566778 99999999999332222221 4
Q ss_pred cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC--CE
Q 015290 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QH 341 (409)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~ 341 (409)
+.|.+.|+.+.|+.+- .+||+|+.||+++|||+|.-+.. .+...|+-|..+|+++.|+|.. .+
T Consensus 299 kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~--------------~pVA~fk~Hk~pItsieW~p~e~s~i 363 (440)
T KOG0302|consen 299 KAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSG--------------QPVATFKYHKAPITSIEWHPHEDSVI 363 (440)
T ss_pred eccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCC--------------CcceeEEeccCCeeEEEeccccCceE
Confidence 7799999999999998 69999999999999999985421 2244466678999999999964 34
Q ss_pred EEEeecCeEEEEEccC
Q 015290 342 LLSRDYMNLKLWDIRM 357 (409)
Q Consensus 342 l~sg~~~~v~iwd~~~ 357 (409)
.++|.|.+|.|||+..
T Consensus 364 aasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 364 AASGEDNQITIWDLSV 379 (440)
T ss_pred EeccCCCcEEEEEeec
Confidence 4455679999999875
No 109
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=1.8e-22 Score=181.54 Aligned_cols=312 Identities=16% Similarity=0.193 Sum_probs=211.0
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
+.+.|+++.=+|--..+|.|..+|+|.|+++..++. +.+|+...
T Consensus 201 ~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki---------------------------l~sFk~d~--------- 244 (910)
T KOG1539|consen 201 FFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI---------------------------LMSFKQDW--------- 244 (910)
T ss_pred cccceeEeccCCcceEEEEeccCceEEEEEcccCcE---------------------------EEEEEccc---------
Confidence 578999999999889999999999999999998873 55666555
Q ss_pred eeccceEEEEEEecCCCCEE-EEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCC-------
Q 015290 111 EIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF------- 182 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 182 (409)
++|++++| ..||..+ ++++..|.+.+||++..+......-.+...+....+.......+......+.
T Consensus 245 ---g~VtslSF--rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 245 ---GRVTSLSF--RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred ---cceeEEEe--ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeC
Confidence 89999999 6788765 5667779999999998887766553333444444444433333333222111
Q ss_pred -------------------ceeecccccc-------ccee----------------------------------------
Q 015290 183 -------------------AHGYHLEWTE-------NMAT---------------------------------------- 196 (409)
Q Consensus 183 -------------------~~~~~~~~~~-------~~~i---------------------------------------- 196 (409)
.+-+.+..+. |++.
T Consensus 320 ~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~ 399 (910)
T KOG1539|consen 320 GDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIV 399 (910)
T ss_pred CCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcce
Confidence 1111111110 0111
Q ss_pred -------------------------EEEecCCcccceeee--eeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccC
Q 015290 197 -------------------------KIANVGNSVHARCQK--VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (409)
Q Consensus 197 -------------------------~~~~~~~~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~ 248 (409)
+.|+......++-.- .-++.....+++++.++-|++.+.| ..|.|-+|+++
T Consensus 400 ~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQ- 478 (910)
T KOG1539|consen 400 EFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQ- 478 (910)
T ss_pred eeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcc-
Confidence 111111111111000 0001123567888889999999999 99999999998
Q ss_pred CCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccc-----ccccccccc---------
Q 015290 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-----SARILRDAA--------- 314 (409)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~-----~~~~~~~~~--------- 314 (409)
++-....+. .-+.|.+.|+.++.+..+ +.+++++.+|.+++||..+..+... .+.....|.
T Consensus 479 SGi~r~sf~----~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ 553 (910)
T KOG1539|consen 479 SGIHRKSFG----DSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL 553 (910)
T ss_pred cCeeecccc----cCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence 665544421 125799999999999988 9999999999999999987642110 000000000
Q ss_pred ----------cccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCC
Q 015290 315 ----------ESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDS 383 (409)
Q Consensus 315 ----------~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (409)
........|.+|...|++++|||||++|++++ |++|++||+-+ +.++..+......
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt-~~lID~~~vd~~~------------ 620 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT-GTLIDGLLVDSPC------------ 620 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccC-cceeeeEecCCcc------------
Confidence 01112235788999999999999999999998 59999999987 8888777655543
Q ss_pred ccceeeEEEcCCCCeEEEcccCC
Q 015290 384 IFDKFECSVSGDGLHFATGSYRR 406 (409)
Q Consensus 384 ~~~v~~~~~spdg~~l~s~s~dg 406 (409)
+++.|||+|.+|||...|+
T Consensus 621 ----~sls~SPngD~LAT~Hvd~ 639 (910)
T KOG1539|consen 621 ----TSLSFSPNGDFLATVHVDQ 639 (910)
T ss_pred ----eeeEECCCCCEEEEEEecC
Confidence 4899999999999998874
No 110
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.2e-23 Score=177.23 Aligned_cols=237 Identities=18% Similarity=0.269 Sum_probs=180.7
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
-.++|.|++-+|+|.+|+.|+..|.|.+|.+.++.. +..+.+|-
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L---------------------------L~v~~aHY--------- 123 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL---------------------------LNVLSAHY--------- 123 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccH---------------------------HHHHHhhc---------
Confidence 367899999999999999888999999999999884 56678888
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
..|+++.| +-||.+|++|+.||.|.+|.+..--...
T Consensus 124 ---Q~ITcL~f--s~dgs~iiTgskDg~V~vW~l~~lv~a~--------------------------------------- 159 (476)
T KOG0646|consen 124 ---QSITCLKF--SDDGSHIITGSKDGAVLVWLLTDLVSAD--------------------------------------- 159 (476)
T ss_pred ---cceeEEEE--eCCCcEEEecCCCccEEEEEEEeecccc---------------------------------------
Confidence 89999999 7999999999999999999874321000
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCC--CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (409)
......++..| ..|.-+|+.+...+. ..+++++ .|.++++||+. .+..+..+. ..
T Consensus 160 ------------~~~~~~p~~~f-~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS-~g~LLlti~--------fp 217 (476)
T KOG0646|consen 160 ------------NDHSVKPLHIF-SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS-LGVLLLTIT--------FP 217 (476)
T ss_pred ------------cCCCccceeee-ccCcceeEEEEecCCCccceEEEecCCceEEEEEec-cceeeEEEe--------cC
Confidence 00012444444 789999999988765 3578888 99999999999 676665532 34
Q ss_pred CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc--ceeeeEeccCCCEEEEe
Q 015290 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLSR 345 (409)
Q Consensus 268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~g~~l~sg 345 (409)
..+.+++.+|-+ +.++.|+.+|.|.+.++.........+..-.. .........+.+|.+ .|+|++.+-||.+|++|
T Consensus 218 ~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~-~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSG 295 (476)
T KOG0646|consen 218 SSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGR-HEENTQINVLVGHENESAITCLAISTDGTLLLSG 295 (476)
T ss_pred CcceeEEEcccc-cEEEecCCcceEEeeehhcCCccccccccccc-ccccceeeeeccccCCcceeEEEEecCccEEEee
Confidence 678999999998 99999999999999887654311100111111 122233455778887 99999999999999999
Q ss_pred ec-CeEEEEEccCCCcceEEEecccCcc
Q 015290 346 DY-MNLKLWDIRMDSTPVATFKIHEHLR 372 (409)
Q Consensus 346 ~~-~~v~iwd~~~~~~~~~~~~~~~~~~ 372 (409)
+. |.|+|||+.+ .++++++....+++
T Consensus 296 d~dg~VcvWdi~S-~Q~iRtl~~~kgpV 322 (476)
T KOG0646|consen 296 DEDGKVCVWDIYS-KQCIRTLQTSKGPV 322 (476)
T ss_pred CCCCCEEEEecch-HHHHHHHhhhcccc
Confidence 85 9999999986 78887776444544
No 111
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=3.1e-25 Score=196.19 Aligned_cols=232 Identities=17% Similarity=0.295 Sum_probs=192.4
Q ss_pred cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (409)
Q Consensus 30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (409)
.|...|.++..-..++.+++|+.|-.+-+|.+.... .+..|.+|+
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~---------------------------~i~S~~~he-------- 70 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN---------------------------AITSLTGHE-------- 70 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCc---------------------------hhheeeccC--------
Confidence 388899999987788999999999999999986543 345689999
Q ss_pred ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (409)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (409)
.+|.+|.| +++..+|++|+.+|+|++||+...+....
T Consensus 71 ----spIeSl~f--~~~E~LlaagsasgtiK~wDleeAk~vrt------------------------------------- 107 (825)
T KOG0267|consen 71 ----SPIESLTF--DTSERLLAAGSASGTIKVWDLEEAKIVRT------------------------------------- 107 (825)
T ss_pred ----Ccceeeec--CcchhhhcccccCCceeeeehhhhhhhhh-------------------------------------
Confidence 99999999 67888999999999999999987654332
Q ss_pred ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (409)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (409)
+.+|...+..+.|+|-+.+.++| .|..+++||++ ...+... +.+|..
T Consensus 108 ------------------------Ltgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R-k~Gc~~~-------~~s~~~ 155 (825)
T KOG0267|consen 108 ------------------------LTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR-KKGCSHT-------YKSHTR 155 (825)
T ss_pred ------------------------hhccccCcceeeeccceEEeccccccccceehhhh-ccCceee-------ecCCcc
Confidence 27899999999999999999999 99999999999 5556665 677999
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c
Q 015290 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (409)
Q Consensus 269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~ 347 (409)
.+..+.|+|+| .+++.|+.|.+++|||...++. .+.| ..|...+..+.|+|..-++++|+ |
T Consensus 156 vv~~l~lsP~G-r~v~~g~ed~tvki~d~~agk~----~~ef-------------~~~e~~v~sle~hp~e~Lla~Gs~d 217 (825)
T KOG0267|consen 156 VVDVLRLSPDG-RWVASGGEDNTVKIWDLTAGKL----SKEF-------------KSHEGKVQSLEFHPLEVLLAPGSSD 217 (825)
T ss_pred eeEEEeecCCC-ceeeccCCcceeeeeccccccc----cccc-------------ccccccccccccCchhhhhccCCCC
Confidence 99999999999 9999999999999999998875 2334 44578899999999988888887 5
Q ss_pred CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR 405 (409)
Q Consensus 348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d 405 (409)
++|++||+++ -+.+...+.... +|.+.+|+|+++.+++|-..
T Consensus 218 ~tv~f~dlet-fe~I~s~~~~~~---------------~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 218 RTVRFWDLET-FEVISSGKPETD---------------GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ceeeeeccce-eEEeeccCCccC---------------CceeeeecCCceeeecCchh
Confidence 9999999985 444444433322 33699999999998887654
No 112
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=3.6e-23 Score=182.41 Aligned_cols=268 Identities=15% Similarity=0.188 Sum_probs=200.6
Q ss_pred cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (409)
Q Consensus 30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (409)
+|+..|..+++.+. ..+++++.||++++|+-..++. -....+.+|.
T Consensus 12 gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~-------------------------l~~~~~~~~~-------- 57 (745)
T KOG0301|consen 12 GHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQY-------------------------LETHAFEGPK-------- 57 (745)
T ss_pred cCccchheeEecCC-eEEeecCCCCceeeeeccCccc-------------------------ccceecccCc--------
Confidence 49999999998765 4789999999999999866543 1234466676
Q ss_pred ceeccceEE-EEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290 110 LEIEEKINR-VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (409)
Q Consensus 110 ~~~~~~v~~-l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (409)
+-|.. +++.+ .++..+++|+.|.+|.+|...+.....+...+ ...+|+++... ...+.++
T Consensus 58 ----g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH-~snVC~ls~~~-------------~~~~iSg 118 (745)
T KOG0301|consen 58 ----GFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGH-KSNVCSLSIGE-------------DGTLISG 118 (745)
T ss_pred ----ceeeccceecc-ccCcceEeecccceEEEEecCCCCchhhhhcc-ccceeeeecCC-------------cCceEec
Confidence 66766 88854 56667999999999999999887766555433 22344443221 2224444
Q ss_pred cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (409)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (409)
+. |.++++|... ++.... .+|+..|.+++.-|++ .+++| .|.+|++|.- +..+++ +.+|.
T Consensus 119 SW--D~TakvW~~~-----~l~~~l-~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~---~~~l~t-------f~gHt 179 (745)
T KOG0301|consen 119 SW--DSTAKVWRIG-----ELVYSL-QGHTASVWAVASLPEN-TYVTGSADKTIKLWKG---GTLLKT-------FSGHT 179 (745)
T ss_pred cc--ccceEEecch-----hhhccc-CCcchheeeeeecCCC-cEEeccCcceeeeccC---Cchhhh-------hccch
Confidence 44 8899999874 444444 8999999999999988 78888 9999999985 455555 78999
Q ss_pred CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-
Q 015290 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (409)
Q Consensus 268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~- 346 (409)
+.|+.+++-+++ .|++++.||.|++|++.... +++. .+|..-+.+++..+++..+++++
T Consensus 180 D~VRgL~vl~~~--~flScsNDg~Ir~w~~~ge~-------l~~~-----------~ghtn~vYsis~~~~~~~Ivs~gE 239 (745)
T KOG0301|consen 180 DCVRGLAVLDDS--HFLSCSNDGSIRLWDLDGEV-------LLEM-----------HGHTNFVYSISMALSDGLIVSTGE 239 (745)
T ss_pred hheeeeEEecCC--CeEeecCCceEEEEeccCce-------eeee-----------eccceEEEEEEecCCCCeEEEecC
Confidence 999999999984 68999999999999995532 2222 35678899999777777777776
Q ss_pred cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 347 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
|++++||+.. .+.+.+.-....+ +++.+-++|. |++|+.||.|
T Consensus 240 DrtlriW~~~---e~~q~I~lPttsi---------------Wsa~~L~NgD-Ivvg~SDG~V 282 (745)
T KOG0301|consen 240 DRTLRIWKKD---ECVQVITLPTTSI---------------WSAKVLLNGD-IVVGGSDGRV 282 (745)
T ss_pred CceEEEeecC---ceEEEEecCccce---------------EEEEEeeCCC-EEEeccCceE
Confidence 5999999964 7777777555443 7888888886 6678888865
No 113
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=7.8e-23 Score=170.87 Aligned_cols=247 Identities=15% Similarity=0.189 Sum_probs=192.9
Q ss_pred cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (409)
.-+|...|+.+.|+|+...+++++.|..|+||.+..... ......|+
T Consensus 257 ~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~---------------------------~~~~~~h~------ 303 (506)
T KOG0289|consen 257 LKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE---------------------------PTSSRPHE------ 303 (506)
T ss_pred ccCcceEEEEEEeccchhheeecCCcceEEeeccccccC---------------------------cccccccc------
Confidence 345999999999999999999999999999999876653 34567787
Q ss_pred ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (409)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
++|+.+.- .|.|.||++++.|++..+.|++++......... ..+-.+.+..+++++.++..
T Consensus 304 ------~~V~~ls~--h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-----------~s~v~~ts~~fHpDgLifgt 364 (506)
T KOG0289|consen 304 ------EPVTGLSL--HPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-----------TSDVEYTSAAFHPDGLIFGT 364 (506)
T ss_pred ------ccceeeee--ccCCcEEEEecCCceEEEEEccCCcEEEEEeec-----------cccceeEEeeEcCCceEEec
Confidence 89999999 589999999999999999999998766543211 12234556778888888888
Q ss_pred ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (409)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (409)
|.. |+.+++||+.... .+..| .+|.++|..++|+.+|-+|+++ +|+.|++||++ ..+.++++. +. .
T Consensus 365 gt~--d~~vkiwdlks~~---~~a~F-pght~~vk~i~FsENGY~Lat~add~~V~lwDLR-Kl~n~kt~~-----l~-~ 431 (506)
T KOG0289|consen 365 GTP--DGVVKIWDLKSQT---NVAKF-PGHTGPVKAISFSENGYWLATAADDGSVKLWDLR-KLKNFKTIQ-----LD-E 431 (506)
T ss_pred cCC--CceEEEEEcCCcc---ccccC-CCCCCceeEEEeccCceEEEEEecCCeEEEEEeh-hhcccceee-----cc-c
Confidence 876 9999999998633 33444 7899999999999999999999 99999999999 444555532 22 2
Q ss_pred cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (409)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~ 346 (409)
...+.++.|++.| .+|+.++.|=.|++++-.+. .|.. ...+..|.+..+.+.|....+++++++
T Consensus 432 ~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k--------~W~~-------~~~~~~~sg~st~v~Fg~~aq~l~s~s 495 (506)
T KOG0289|consen 432 KKEVNSLSFDQSG-TYLGIAGSDLQVYICKKKTK--------SWTE-------IKELADHSGLSTGVRFGEHAQYLASTS 495 (506)
T ss_pred cccceeEEEcCCC-CeEEeecceeEEEEEecccc--------ccee-------eehhhhcccccceeeecccceEEeecc
Confidence 2368999999999 99999987766666664432 2222 222345567889999999999999998
Q ss_pred c-CeEEEEEc
Q 015290 347 Y-MNLKLWDI 355 (409)
Q Consensus 347 ~-~~v~iwd~ 355 (409)
. ..++++.+
T Consensus 496 md~~l~~~a~ 505 (506)
T KOG0289|consen 496 MDAILRLYAL 505 (506)
T ss_pred chhheEEeec
Confidence 4 77777754
No 114
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=6.7e-23 Score=164.31 Aligned_cols=224 Identities=19% Similarity=0.289 Sum_probs=166.4
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCcee----eeeeccC---CCcccccccccccccCceeccCCCCCceee
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV----KKIKEMD---HFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (409)
+++.+-+| ++||.++++|+.|..|+|.|+...-. ....... ..+.+. .+...-..+-...++|-..+++
T Consensus 113 ~~cR~aaf--s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIR--TlYDH~devn~l~FHPre~ILi 188 (430)
T KOG0640|consen 113 SPCRAAAF--SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIR--TLYDHVDEVNDLDFHPRETILI 188 (430)
T ss_pred cceeeeee--CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEe--ehhhccCcccceeecchhheEE
Confidence 89999999 89999999999999999999863211 1110000 001000 0111122233445667777888
Q ss_pred cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (409)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (409)
+++. |++++++|.......+-.+.+ ....+|.++.|+|.|++|+.| +-.++++||+. +-+++-.- ..-.+
T Consensus 189 S~sr--D~tvKlFDfsK~saKrA~K~~--qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~-T~Qcfvsa----nPd~q 259 (430)
T KOG0640|consen 189 SGSR--DNTVKLFDFSKTSAKRAFKVF--QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN-TYQCFVSA----NPDDQ 259 (430)
T ss_pred eccC--CCeEEEEecccHHHHHHHHHh--hccceeeeEeecCCCceEEEecCCCceeEEecc-ceeEeeec----Ccccc
Confidence 8776 999999999875555544544 344579999999999999999 88999999999 56655332 12467
Q ss_pred ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccc-ccceeeeEeccCCCEEEE
Q 015290 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDGQHLLS 344 (409)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~s 344 (409)
|.+.|+++.+++.+ ++.+++|.||.|++||--+++ | +..+.. .| ...|.+..|..+|+|+++
T Consensus 260 ht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~r-C---v~t~~~------------AH~gsevcSa~Ftkn~kyiLs 322 (430)
T KOG0640|consen 260 HTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNR-C---VRTIGN------------AHGGSEVCSAVFTKNGKYILS 322 (430)
T ss_pred cccceeEEEecCCc-cEEEEeccCCcEEeeccccHH-H---HHHHHh------------hcCCceeeeEEEccCCeEEee
Confidence 99999999999999 999999999999999977765 3 233332 12 358999999999999998
Q ss_pred ee-cCeEEEEEccCCCcceEEEecc
Q 015290 345 RD-YMNLKLWDIRMDSTPVATFKIH 368 (409)
Q Consensus 345 g~-~~~v~iwd~~~~~~~~~~~~~~ 368 (409)
.+ |..|++|.+.+ ++++..+.|.
T Consensus 323 SG~DS~vkLWEi~t-~R~l~~YtGA 346 (430)
T KOG0640|consen 323 SGKDSTVKLWEIST-GRMLKEYTGA 346 (430)
T ss_pred cCCcceeeeeeecC-CceEEEEecC
Confidence 76 69999999997 8999999875
No 115
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.6e-23 Score=161.12 Aligned_cols=220 Identities=17% Similarity=0.267 Sum_probs=166.6
Q ss_pred CccccCCCcEEEEEECC--CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcc
Q 015290 26 DEELQDVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (409)
Q Consensus 26 ~~~~~h~~~v~~v~~~~--~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 103 (409)
.++.+|.++|+.++|-. -|.+||+++.||.|.||.-++++- .-......|+
T Consensus 50 ~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w-------------------------~k~~e~~~h~-- 102 (299)
T KOG1332|consen 50 AELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW-------------------------TKAYEHAAHS-- 102 (299)
T ss_pred eEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch-------------------------hhhhhhhhhc--
Confidence 45567999999999965 899999999999999999887742 2344567787
Q ss_pred ccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc
Q 015290 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (409)
Q Consensus 104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (409)
..|++|+|.|+.-|-.|++++.||.|.|.++++...-..
T Consensus 103 ----------~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t------------------------------- 141 (299)
T KOG1332|consen 103 ----------ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT------------------------------- 141 (299)
T ss_pred ----------ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc-------------------------------
Confidence 899999998877888899999999999999876411000
Q ss_pred eeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC---C-----------CeEEEe-cCCeEEEEEccC
Q 015290 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---C-----------ETFVSA-DDLRINLWNLEI 248 (409)
Q Consensus 184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~-----------~~l~~~-~d~~i~lwd~~~ 248 (409)
......|.-.|+++.|.|. | +.|++| .|..|+||+...
T Consensus 142 ---------------------------~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~ 194 (299)
T KOG1332|consen 142 ---------------------------SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDS 194 (299)
T ss_pred ---------------------------hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCC
Confidence 0012678888999999875 4 569999 999999999983
Q ss_pred CCceeeeeecCCCcCcCccCceEEEEEeCCC---CCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccc
Q 015290 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIY---CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 325 (409)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (409)
..-.+. ..+.+|.+.|+.++|.|.- ..++|++|.||++.||-.+.... .-..+.+ ..
T Consensus 195 ~~w~~e------~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e-~wk~tll-------------~~ 254 (299)
T KOG1332|consen 195 DSWKLE------RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE-PWKKTLL-------------EE 254 (299)
T ss_pred cchhhh------hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC-ccccccc-------------cc
Confidence 211111 2278999999999999974 25899999999999998763211 1011111 12
Q ss_pred cccceeeeEeccCCCEEEEee-cCeEEEEEccCCCc
Q 015290 326 IIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST 360 (409)
Q Consensus 326 ~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~ 360 (409)
....+..+.||..|++|+.++ |+.|.+|.-..+|+
T Consensus 255 f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gk 290 (299)
T KOG1332|consen 255 FPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGK 290 (299)
T ss_pred CCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCc
Confidence 245799999999999999775 69999998765444
No 116
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=1.9e-22 Score=177.83 Aligned_cols=331 Identities=15% Similarity=0.135 Sum_probs=218.5
Q ss_pred cccCCCcEEEEEECCCCC---EEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeee----------
Q 015290 28 ELQDVDIVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK---------- 94 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~~~~---~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 94 (409)
.-+|.+-|.+++|...+. +||++|.|..||||.+.-.... ...+++.... .....|.+...
T Consensus 187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~---~~~~~e~~~t---~~~~~~~f~~l~~i~~~is~e 260 (764)
T KOG1063|consen 187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDE---DSNEREDSLT---TLSNLPVFMILEEIQYRISFE 260 (764)
T ss_pred eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCc---cccccccccc---cccCCceeeeeeeEEEEEehh
Confidence 445999999999987544 8899999999999998643311 0000000000 00001111111
Q ss_pred eeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCce
Q 015290 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (409)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (409)
..+.||+ +.|.++.| +|.+..|++++.|+++.+|...+..-.......... ..-..+.+.
T Consensus 261 all~GHe------------DWV~sv~W--~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe------~gg~a~GF~ 320 (764)
T KOG1063|consen 261 ALLMGHE------------DWVYSVWW--HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGE------VGGSAGGFW 320 (764)
T ss_pred hhhcCcc------------cceEEEEE--ccchhhheecccCcceEEEecCCccceEEEEEEeec------cccccccee
Confidence 2345888 99999999 688889999999999999988765322221111100 001123455
Q ss_pred eccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCcee
Q 015290 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF 253 (409)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~ 253 (409)
.+.++++..++..-+. .|..++|..+........... .+|-+.|..++|+|.|++|++. .|.+-+++-.-......
T Consensus 321 g~lw~~n~~~ii~~g~--~Gg~hlWkt~d~~~w~~~~~i-SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~w 397 (764)
T KOG1063|consen 321 GGLWSPNSNVIIAHGR--TGGFHLWKTKDKTFWTQEPVI-SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEW 397 (764)
T ss_pred eEEEcCCCCEEEEecc--cCcEEEEeccCccceeecccc-ccccccceeeeecCCCCEEEEeccccceeeecccccccce
Confidence 6666666655444433 778999984443333344433 8999999999999999999998 99999987654122222
Q ss_pred eeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcc------c---ccc----------------ccc
Q 015290 254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA------L---CDH----------------SAR 308 (409)
Q Consensus 254 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~------~---~~~----------------~~~ 308 (409)
..+ .+-.-|...++|++|-+.. ..|++|..+..+|+|+....- . +.. ..+
T Consensus 398 HEi----aRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnK 472 (764)
T KOG1063|consen 398 HEI----ARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNK 472 (764)
T ss_pred eee----cccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCC
Confidence 222 1134577788999999864 789999999999999865410 0 000 000
Q ss_pred -ccc------cc----cccc-----------C------------CcccccccccceeeeEeccCCCEEEEeec------C
Q 015290 309 -ILR------DA----AESH-----------G------------SKSFFTEIIASISDIKFANDGQHLLSRDY------M 348 (409)
Q Consensus 309 -~~~------~~----~~~~-----------~------------~~~~~~~~~~~i~~~~~s~~g~~l~sg~~------~ 348 (409)
.+. .+ .+.+ + ...-+.||...|.+++.+|+|+++|+++. -
T Consensus 473 a~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehA 552 (764)
T KOG1063|consen 473 AFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHA 552 (764)
T ss_pred CCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccce
Confidence 000 00 0000 0 01124689999999999999999998742 5
Q ss_pred eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 349 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
.|++|+..+ -...+.+.+|.-.+ +.++|||||++|++.|.|+++
T Consensus 553 vI~lw~t~~-W~~~~~L~~HsLTV---------------T~l~FSpdg~~LLsvsRDRt~ 596 (764)
T KOG1063|consen 553 VIRLWNTAN-WLQVQELEGHSLTV---------------TRLAFSPDGRYLLSVSRDRTV 596 (764)
T ss_pred EEEEEeccc-hhhhheecccceEE---------------EEEEECCCCcEEEEeecCceE
Confidence 799999875 67777899998876 799999999999999999875
No 117
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=1.4e-22 Score=170.41 Aligned_cols=251 Identities=19% Similarity=0.256 Sum_probs=182.8
Q ss_pred CCCcEEEEEECCCC--CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290 31 DVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (409)
Q Consensus 31 h~~~v~~v~~~~~~--~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (409)
+...|++++|+|.. +++|+|+.-|.|-+||+.+.+. .+.-+..+..|.
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-----------------------d~d~v~~f~~hs------- 234 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-----------------------DKDGVYLFTPHS------- 234 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-----------------------ccCceEEeccCC-------
Confidence 68899999999954 5889999999999999964442 334566788898
Q ss_pred cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (409)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (409)
++|.+|.|.| .+...+++.|.||+|++-|+++.....+...
T Consensus 235 -----~~Vs~l~F~P-~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~--------------------------------- 275 (498)
T KOG4328|consen 235 -----GPVSGLKFSP-ANTSQIYSSSYDGTIRLQDFEGNISEEVLSL--------------------------------- 275 (498)
T ss_pred -----ccccceEecC-CChhheeeeccCceeeeeeecchhhHHHhhc---------------------------------
Confidence 8999999965 4556899999999999999987654332210
Q ss_pred cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (409)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (409)
......+..+.|+.+...++.+ .=|...+||++..+..... +.-|.
T Consensus 276 --------------------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~-------~~lh~ 322 (498)
T KOG4328|consen 276 --------------------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN-------LRLHK 322 (498)
T ss_pred --------------------------CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh-------hhhhh
Confidence 1233445678888888788887 6679999999966654544 45677
Q ss_pred CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-
Q 015290 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (409)
Q Consensus 268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~- 346 (409)
..|.+++++|..+.+||++|.|++.+|||+|.-..... ..+ ....|...|.+..|||+|-.|++.+
T Consensus 323 kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s--p~l-----------st~~HrrsV~sAyFSPs~gtl~TT~~ 389 (498)
T KOG4328|consen 323 KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS--PFL-----------STLPHRRSVNSAYFSPSGGTLLTTCQ 389 (498)
T ss_pred cccceeecCCCCchheeecccCcceeeeehhhhcCCCC--cce-----------ecccccceeeeeEEcCCCCceEeecc
Confidence 89999999999989999999999999999987432110 011 1235688999999999876566654
Q ss_pred cCeEEEEEcc---CCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290 347 YMNLKLWDIR---MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRR 406 (409)
Q Consensus 347 ~~~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg 406 (409)
|+.|+|||.. ....++..+. |...-. +-...+.++|.||..++++|-.-.
T Consensus 390 D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~---------RwlT~fKA~W~P~~~li~vg~~~r 442 (498)
T KOG4328|consen 390 DNEIRVFDSSCISAKDEPLGTIP-HNNRTG---------RWLTPFKAAWDPDYNLIVVGRYPR 442 (498)
T ss_pred CCceEEeecccccccCCccceee-ccCccc---------ccccchhheeCCCccEEEEeccCc
Confidence 6999999983 1133444443 222110 111225899999999998886543
No 118
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=3.7e-23 Score=183.03 Aligned_cols=249 Identities=15% Similarity=0.180 Sum_probs=195.6
Q ss_pred CccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (409)
Q Consensus 26 ~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (409)
.....-...|.+++.+|+|++||+|..-|.++||+++..+ ....+.+|+
T Consensus 453 ~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~---------------------------~~~~~eAHe---- 501 (1080)
T KOG1408|consen 453 VSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE---------------------------YTCFMEAHE---- 501 (1080)
T ss_pred hhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh---------------------------hhhheeccc----
Confidence 3344456789999999999999999999999999998765 345678898
Q ss_pred ccccceeccceEEEEEEecC--CCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc
Q 015290 106 YLKSLEIEEKINRVRWCAAP--NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (409)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (409)
..|.|+.|.. | ..++|++++.|+.|.++|+...-
T Consensus 502 --------sEilcLeyS~-p~~~~kLLASasrdRlIHV~Dv~rny----------------------------------- 537 (1080)
T KOG1408|consen 502 --------SEILCLEYSF-PVLTNKLLASASRDRLIHVYDVKRNY----------------------------------- 537 (1080)
T ss_pred --------ceeEEEeecC-chhhhHhhhhccCCceEEEEeccccc-----------------------------------
Confidence 8999999952 3 34689999999999999986542
Q ss_pred eeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC--CeEEEe-cCCeEEEEEccCCCceeeeeecCC
Q 015290 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKP 260 (409)
Q Consensus 184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~ 260 (409)
..++++ .+|...|+++.|.-.| ..++++ .|..|.+--.+..+ ....+. +
T Consensus 538 ------------------------~l~qtl-d~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~-~g~~f~-r- 589 (1080)
T KOG1408|consen 538 ------------------------DLVQTL-DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS-SGRLFP-R- 589 (1080)
T ss_pred ------------------------chhhhh-cccccceeEEEEeecCCceEEEeccCchhhheehhcccc-Cceecc-c-
Confidence 112222 7899999999998776 667777 88877644333111 111110 0
Q ss_pred CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC
Q 015290 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (409)
Q Consensus 261 ~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 340 (409)
..-.-....++.++..|.. +++++++.|..|+|||+.+++. .+.|.+ -.+|.+....+...|.|.
T Consensus 590 ~t~t~~ktTlYDm~Vdp~~-k~v~t~cQDrnirif~i~sgKq----~k~FKg----------s~~~eG~lIKv~lDPSgi 654 (1080)
T KOG1408|consen 590 HTQTLSKTTLYDMAVDPTS-KLVVTVCQDRNIRIFDIESGKQ----VKSFKG----------SRDHEGDLIKVILDPSGI 654 (1080)
T ss_pred cccccccceEEEeeeCCCc-ceEEEEecccceEEEeccccce----eeeecc----------cccCCCceEEEEECCCcc
Confidence 0011123568999999998 9999999999999999999986 366666 245677889999999999
Q ss_pred EEEEe-ecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 341 HLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 341 ~l~sg-~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
|||+. +|+++.++|+.+ ++++....||...+ +.+.|.+|-+.|++.+.||.|
T Consensus 655 Y~atScsdktl~~~Df~s-gEcvA~m~GHsE~V---------------TG~kF~nDCkHlISvsgDgCI 707 (1080)
T KOG1408|consen 655 YLATSCSDKTLCFVDFVS-GECVAQMTGHSEAV---------------TGVKFLNDCKHLISVSGDGCI 707 (1080)
T ss_pred EEEEeecCCceEEEEecc-chhhhhhcCcchhe---------------eeeeecccchhheeecCCceE
Confidence 99987 579999999986 99999999999987 799999999999999999976
No 119
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=4.6e-22 Score=158.92 Aligned_cols=248 Identities=14% Similarity=0.203 Sum_probs=172.4
Q ss_pred ceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCcee
Q 015290 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR 92 (409)
Q Consensus 13 ~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (409)
.|++.+. +...+-....|.++|.+++|+.||..+++|+.|+.+++||+.+++
T Consensus 54 ~wevq~~-g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q--------------------------- 105 (347)
T KOG0647|consen 54 IWEVQNS-GQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ--------------------------- 105 (347)
T ss_pred EEEEecC-CcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC---------------------------
Confidence 4666553 222223344489999999999999999999999999999999987
Q ss_pred eeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccC
Q 015290 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (409)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (409)
+..+..|. ++|.++.|.+...-..|+|||.|++|+.||.+.........+ +..+.++
T Consensus 106 -~~~v~~Hd------------~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L--PeRvYa~-------- 162 (347)
T KOG0647|consen 106 -VSQVAAHD------------APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL--PERVYAA-------- 162 (347)
T ss_pred -eeeeeecc------------cceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec--cceeeeh--------
Confidence 35678888 999999998645556899999999999999987665444332 1111111
Q ss_pred ceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCc
Q 015290 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ 251 (409)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~ 251 (409)
..-.+-...+. .+..|.++++++......... ....-.++|++..++.+..+.| -+|.+.+..+....+
T Consensus 163 ----Dv~~pm~vVat----a~r~i~vynL~n~~te~k~~~--SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~ 232 (347)
T KOG0647|consen 163 ----DVLYPMAVVAT----AERHIAVYNLENPPTEFKRIE--SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP 232 (347)
T ss_pred ----hccCceeEEEe----cCCcEEEEEcCCCcchhhhhc--CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc
Confidence 11001111111 266899999976543322221 2344567899999988888888 999999999883222
Q ss_pred eeeeeecCCCcCcCcc---------CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccc
Q 015290 252 CFNIVDMKPSNMDDLT---------EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (409)
Q Consensus 252 ~~~~~~~~~~~~~~~~---------~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (409)
..-+. ++.|. ..|++++|+|.. ..|++++.||++.+||-..... ++..+
T Consensus 233 -~~nFt-----FkCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~k----Lk~s~----------- 290 (347)
T KOG0647|consen 233 -KDNFT-----FKCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDARTK----LKTSE----------- 290 (347)
T ss_pred -cCcee-----EEEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchhhhh----hhccC-----------
Confidence 22221 23333 358889999988 9999999999999999765321 12222
Q ss_pred ccccccceeeeEeccCCCEEEEe
Q 015290 323 FTEIIASISDIKFANDGQHLLSR 345 (409)
Q Consensus 323 ~~~~~~~i~~~~~s~~g~~l~sg 345 (409)
.|..+|++.+|+.+|.++|.+
T Consensus 291 --~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 291 --THPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred --cCCCccceeEecCCCCEEEEE
Confidence 235799999999999999865
No 120
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.4e-21 Score=167.60 Aligned_cols=283 Identities=15% Similarity=0.144 Sum_probs=204.3
Q ss_pred CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (409)
...|.+|+|+.+.+.||.+-.||.|.||++...= -+...+.+++.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w--------------------------~~~~vi~g~~d--------- 69 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW--------------------------FLEPVIHGPED--------- 69 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCc--------------------------eeeEEEecCCC---------
Confidence 5789999999999999999999999999987632 24456777763
Q ss_pred eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (409)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (409)
..|.+++| . ++..|.+.+.+|.|.-||+.+.+.+.... ...+.+-+...++....++.+..
T Consensus 70 --rsIE~L~W--~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d-------------~~gg~IWsiai~p~~~~l~Igcd- 130 (691)
T KOG2048|consen 70 --RSIESLAW--A-EGGRLFSSGLSGSITEWDLHTLKQKYNID-------------SNGGAIWSIAINPENTILAIGCD- 130 (691)
T ss_pred --CceeeEEE--c-cCCeEEeecCCceEEEEecccCceeEEec-------------CCCcceeEEEeCCccceEEeecC-
Confidence 78999999 3 66799999999999999999887765543 22233444444555555555532
Q ss_pred ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC-ccCc
Q 015290 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEV 269 (409)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~-~~~~ 269 (409)
+|.+...+..... -.....+....+.|.+++|+|++..+++| .||.|++||.. .+..+..+.++...+.. ...-
T Consensus 131 -dGvl~~~s~~p~~--I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~-~~~t~~~~~~~~d~l~k~~~~i 206 (691)
T KOG2048|consen 131 -DGVLYDFSIGPDK--ITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK-SGQTLHIITMQLDRLSKREPTI 206 (691)
T ss_pred -CceEEEEecCCce--EEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC-CCceEEEeeecccccccCCceE
Confidence 6655555554311 11122235667899999999999999999 99999999999 66666655555444443 4456
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cC
Q 015290 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (409)
Q Consensus 270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~ 348 (409)
|+++.|-.+ ..|++|...|+|.+||...+.+ ++.+ ..|.+.|.+++..+++.++.+++ |+
T Consensus 207 VWSv~~Lrd--~tI~sgDS~G~V~FWd~~~gTL----iqS~-------------~~h~adVl~Lav~~~~d~vfsaGvd~ 267 (691)
T KOG2048|consen 207 VWSVLFLRD--STIASGDSAGTVTFWDSIFGTL----IQSH-------------SCHDADVLALAVADNEDRVFSAGVDP 267 (691)
T ss_pred EEEEEEeec--CcEEEecCCceEEEEcccCcch----hhhh-------------hhhhcceeEEEEcCCCCeEEEccCCC
Confidence 889998876 4899999999999999988765 2333 33467899999999988888776 68
Q ss_pred eEEEEEccCCCcc---eEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 349 NLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 349 ~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
.|..|.....+.. ......|..-+ .+++..++ .|++|+.|.++
T Consensus 268 ~ii~~~~~~~~~~wv~~~~r~~h~hdv---------------rs~av~~~--~l~sgG~d~~l 313 (691)
T KOG2048|consen 268 KIIQYSLTTNKSEWVINSRRDLHAHDV---------------RSMAVIEN--ALISGGRDFTL 313 (691)
T ss_pred ceEEEEecCCccceeeeccccCCcccc---------------eeeeeecc--eEEecceeeEE
Confidence 8888887653331 11222333332 58888877 88899988764
No 121
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.90 E-value=9.5e-22 Score=154.51 Aligned_cols=199 Identities=17% Similarity=0.264 Sum_probs=161.8
Q ss_pred eecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCcee
Q 015290 96 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN 175 (409)
Q Consensus 96 ~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (409)
.++||+ .+++.|.| +.+|.+|.+|+.|.++.+|--.+|+..-
T Consensus 5 ~l~GHE------------RplTqiKy--N~eGDLlFscaKD~~~~vw~s~nGerlG------------------------ 46 (327)
T KOG0643|consen 5 LLQGHE------------RPLTQIKY--NREGDLLFSCAKDSTPTVWYSLNGERLG------------------------ 46 (327)
T ss_pred ccccCc------------cccceEEe--cCCCcEEEEecCCCCceEEEecCCceee------------------------
Confidence 368898 89999999 7999999999999999999887765432
Q ss_pred ccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceee
Q 015290 176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN 254 (409)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~ 254 (409)
++ .+|.+.|.|+..+.+.+.+++| .|.+++|||+. +++.+.
T Consensus 47 ------------------------------------ty-~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~-tGk~la 88 (327)
T KOG0643|consen 47 ------------------------------------TY-DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE-TGKQLA 88 (327)
T ss_pred ------------------------------------ee-cCCCceEEEEEecCCcceeeeccccceeEEEEcC-CCcEEE
Confidence 23 7999999999999999999999 99999999999 787777
Q ss_pred eeecCCCcCcCccCceEEEEEeCCCCCEEEEEe-----CCCeEEEEeCCCcccc---ccccccccccccccCCccccccc
Q 015290 255 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-----SRGFVRLVDMRQSALC---DHSARILRDAAESHGSKSFFTEI 326 (409)
Q Consensus 255 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s-----~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 326 (409)
.+. -...|..+.|+++| ++++... ..+.|.++|++..... ..+... +..+
T Consensus 89 ~~k--------~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k-------------I~t~ 146 (327)
T KOG0643|consen 89 TWK--------TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK-------------IPTP 146 (327)
T ss_pred Eee--------cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE-------------ecCC
Confidence 642 34689999999999 7777654 3467999999854310 000111 1223
Q ss_pred ccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290 327 IASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR 405 (409)
Q Consensus 327 ~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d 405 (409)
...++.+-|+|-+++|++|.+ |.|.+||++++.+.+.....|...+ .++.++||..+++++|.|
T Consensus 147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~I---------------nd~q~s~d~T~FiT~s~D 211 (327)
T KOG0643|consen 147 DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKI---------------NDLQFSRDRTYFITGSKD 211 (327)
T ss_pred ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhcccc---------------ccccccCCcceEEecccC
Confidence 578999999999999999975 9999999997556777778888876 599999999999999999
Q ss_pred CC
Q 015290 406 RD 407 (409)
Q Consensus 406 g~ 407 (409)
.+
T Consensus 212 tt 213 (327)
T KOG0643|consen 212 TT 213 (327)
T ss_pred cc
Confidence 75
No 122
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=7.6e-23 Score=179.13 Aligned_cols=235 Identities=16% Similarity=0.190 Sum_probs=182.7
Q ss_pred cccceeeehhccC---CCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhccccccc
Q 015290 10 ASLEWKCSQAFGE---RNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST 86 (409)
Q Consensus 10 ~~~~w~~~~~~~~---~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (409)
.-..|+..|...+ +.....-.|.+-|+.+....+++.|+++|.|-+|++|+...+..
T Consensus 48 ~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~-------------------- 107 (735)
T KOG0308|consen 48 IIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT-------------------- 107 (735)
T ss_pred eEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc--------------------
Confidence 3346887776553 22345556999999999999999999999999999999876531
Q ss_pred CCCceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccc
Q 015290 87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT 166 (409)
Q Consensus 87 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 166 (409)
-+..++..|. +.|.|+++. .++..++++|+.|+.|.+||++.+.......++.
T Consensus 108 -----~c~stir~H~------------DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~--------- 160 (735)
T KOG0308|consen 108 -----FCMSTIRTHK------------DYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNN--------- 160 (735)
T ss_pred -----hhHhhhhccc------------chheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccc---------
Confidence 1456678888 899999984 4788899999999999999999874321111110
Q ss_pred cccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEE
Q 015290 167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN 245 (409)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd 245 (409)
........++...|.+++.++.|..+++| ..+.+++||
T Consensus 161 -----------------------------------------~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wD 199 (735)
T KOG0308|consen 161 -----------------------------------------VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWD 199 (735)
T ss_pred -----------------------------------------cccccCCCCCccceeeeecCCcceEEEecCcccceEEec
Confidence 00000113788899999999999899999 999999999
Q ss_pred ccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccc
Q 015290 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 325 (409)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (409)
.++..+.++ +.+|...|..+..++|| ..++++|.||+|++||+...+ | +..+..
T Consensus 200 prt~~kimk--------LrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQr-C---l~T~~v------------- 253 (735)
T KOG0308|consen 200 PRTCKKIMK--------LRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQR-C---LATYIV------------- 253 (735)
T ss_pred cccccceee--------eeccccceEEEEEcCCC-CeEeecCCCceEEeeeccccc-e---eeeEEe-------------
Confidence 994333333 67999999999999999 999999999999999998754 3 233333
Q ss_pred cccceeeeEeccCCCEEEEee-cCeEEEEEccCC
Q 015290 326 IIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD 358 (409)
Q Consensus 326 ~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~ 358 (409)
|...++++..+|+-..+.+|+ |+.|..=|++..
T Consensus 254 H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 254 HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 456799999999999999997 599999999863
No 123
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=3.5e-22 Score=173.43 Aligned_cols=281 Identities=16% Similarity=0.224 Sum_probs=196.3
Q ss_pred hhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeee
Q 015290 18 QAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF 97 (409)
Q Consensus 18 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (409)
+.|.........+|++.|.++...|.|.+||+|+.||+|+||.+.++.+ +..+
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc---------------------------vr~~ 438 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC---------------------------VRTV 438 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE---------------------------EEEE
Confidence 3344444444556999999999999999999999999999999998873 3333
Q ss_pred cCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceecc
Q 015290 98 QSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH 177 (409)
Q Consensus 98 ~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (409)
. .++.|.||+|+|.++-..|+++-.+. +-|-+..-|....... . .
T Consensus 439 ~-------------~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~--t-------------~------ 483 (733)
T KOG0650|consen 439 Q-------------FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGP--T-------------K------ 483 (733)
T ss_pred e-------------ecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhcc--h-------------h------
Confidence 2 22689999997766666666665555 5555544331110000 0 0
Q ss_pred CCCCCceeecc--cccccceeEEEecCCcccce-eeeeeccccccceeEEEeCCCCCeEEEe-c---CCeEEEEEccCCC
Q 015290 178 NPPSFAHGYHL--EWTENMATKIANVGNSVHAR-CQKVYPHAHDFNINSISNNSDCETFVSA-D---DLRINLWNLEISD 250 (409)
Q Consensus 178 ~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~---d~~i~lwd~~~~~ 250 (409)
..++.+ -...+..+..|.-......+ -+... -.|...|..|.||..|.+|++. . ...|.|+++. ..
T Consensus 484 -----ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~-I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS-K~ 556 (733)
T KOG0650|consen 484 -----ELLASAPNESEPDAAVVTWSRASLDELEKGVCIV-IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS-KR 556 (733)
T ss_pred -----hhhhcCCCccCCcccceeechhhhhhhccceEEE-EecCCccceeeeecCCceEEEeccCCCcceEEEEecc-cc
Confidence 000000 00124456667654322222 11222 4688999999999999999985 3 4578899988 33
Q ss_pred ceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccce
Q 015290 251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (409)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 330 (409)
..... +....+.|.++.|+|.. .+|+.++. ..|+|||+....+. .+.+.. ...|
T Consensus 557 ~sQ~P-------F~kskG~vq~v~FHPs~-p~lfVaTq-~~vRiYdL~kqelv---KkL~tg--------------~kwi 610 (733)
T KOG0650|consen 557 KSQSP-------FRKSKGLVQRVKFHPSK-PYLFVATQ-RSVRIYDLSKQELV---KKLLTG--------------SKWI 610 (733)
T ss_pred cccCc-------hhhcCCceeEEEecCCC-ceEEEEec-cceEEEehhHHHHH---HHHhcC--------------Ceee
Confidence 33322 45566789999999998 66665554 46999999875542 122333 4589
Q ss_pred eeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 331 SDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 331 ~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
..++.+|.|.-|+.|+ |+.+..+|++...++.+++..|...+ ++++|++.-.++++|+.||++
T Consensus 611 S~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~av---------------r~Va~H~ryPLfas~sdDgtv 674 (733)
T KOG0650|consen 611 SSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAV---------------RSVAFHKRYPLFASGSDDGTV 674 (733)
T ss_pred eeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhh---------------hhhhhccccceeeeecCCCcE
Confidence 9999999999888887 59999999998778999999999887 799999999999999999986
No 124
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.9e-21 Score=156.55 Aligned_cols=280 Identities=15% Similarity=0.204 Sum_probs=203.2
Q ss_pred CCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccC----CcCC-CCccchhhhhhhccccccc-------CCCc
Q 015290 23 RNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG----GKNT-PNQHISRSELEKQMDFTST-------SHPE 90 (409)
Q Consensus 23 ~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~----~~~~-~~~~~~~~~~~~~~~~~~~-------~~~~ 90 (409)
.....-.+|.+.|++++|++.+.++++++.|++..||...- .+.. +..+....++++...-... ..+.
T Consensus 181 ~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~t 260 (481)
T KOG0300|consen 181 ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHT 260 (481)
T ss_pred cceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCce
Confidence 34455667999999999999999999999999999998321 1110 1112334444444321111 1122
Q ss_pred -eeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCccccccccccc
Q 015290 91 -YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (409)
Q Consensus 91 -~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (409)
--++..|.+|. +.|.+..|. ..|+.+++++.|++..+||+++++.......+.
T Consensus 261 iRvPl~~ltgH~------------~vV~a~dWL--~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd------------ 314 (481)
T KOG0300|consen 261 IRVPLMRLTGHR------------AVVSACDWL--AGGQQMVTASWDRTANLWDVETGEVVNILTGHD------------ 314 (481)
T ss_pred eeeeeeeeeccc------------cceEehhhh--cCcceeeeeeccccceeeeeccCceeccccCcc------------
Confidence 23677899999 899999994 789999999999999999999998876654332
Q ss_pred ccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccC
Q 015290 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (409)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~ 248 (409)
..+..+..++........+. |.+.++||... ..+.+..| .+|...|+++.|..+. .+++| +|.+|++||++.
T Consensus 315 -~ELtHcstHptQrLVvTsSr--DtTFRLWDFRe--aI~sV~VF-QGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 315 -SELTHCSTHPTQRLVVTSSR--DTTFRLWDFRE--AIQSVAVF-QGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRN 387 (481)
T ss_pred -hhccccccCCcceEEEEecc--CceeEeccchh--hcceeeee-cccccceeEEEEecCC-ceeecCCCceEEEeeecc
Confidence 22344555555555555554 88999999973 33455555 9999999999998765 57888 999999999997
Q ss_pred CCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (409)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (409)
.+.++.++. ..++++.++.+..+ .+++.--.+..|++||+....+. .+ +++.-.+|..
T Consensus 388 MRsplATIR--------tdS~~NRvavs~g~-~iIAiPhDNRqvRlfDlnG~Rla-----Rl--------PrtsRqgHrR 445 (481)
T KOG0300|consen 388 MRSPLATIR--------TDSPANRVAVSKGH-PIIAIPHDNRQVRLFDLNGNRLA-----RL--------PRTSRQGHRR 445 (481)
T ss_pred ccCcceeee--------cCCccceeEeecCC-ceEEeccCCceEEEEecCCCccc-----cC--------Ccccccccce
Confidence 777777642 34678889999877 88888888899999999876541 11 2233467889
Q ss_pred ceeeeEeccCC---CEEEEeecCeEEEEEccC
Q 015290 329 SISDIKFANDG---QHLLSRDYMNLKLWDIRM 357 (409)
Q Consensus 329 ~i~~~~~s~~g---~~l~sg~~~~v~iwd~~~ 357 (409)
.|.+++|..+- +++.+|-|..+.=|++..
T Consensus 446 MV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 446 MVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred eeeeeeccccCcccccccccccceeeeeEecc
Confidence 99999998653 344455579999999864
No 125
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=3.3e-22 Score=169.92 Aligned_cols=222 Identities=14% Similarity=0.173 Sum_probs=177.2
Q ss_pred cEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceec
Q 015290 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (409)
Q Consensus 34 ~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (409)
.-.|++......|+++|+..+.|+|||+.... +.+.+++|+
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl---------------------------~hr~lkdh~------------ 121 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKL---------------------------IHRFLKDHQ------------ 121 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHH---------------------------HhhhccCCc------------
Confidence 33455555555899999999999999998544 356689999
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (409)
..|+++.+ +-...+|++++..|-|.|..+.++.....+.
T Consensus 122 stvt~v~Y--N~~DeyiAsvs~gGdiiih~~~t~~~tt~f~--------------------------------------- 160 (673)
T KOG4378|consen 122 STVTYVDY--NNTDEYIASVSDGGDIIIHGTKTKQKTTTFT--------------------------------------- 160 (673)
T ss_pred ceeEEEEe--cCCcceeEEeccCCcEEEEecccCcccccee---------------------------------------
Confidence 89999999 5778899999999999999988764432211
Q ss_pred ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEE-e-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceE
Q 015290 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (409)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (409)
.+....|.-+.++|..+.+++ + ++|.|.+||+. ...++..+ ...|..+..
T Consensus 161 ---------------------~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~-g~sp~~~~------~~~HsAP~~ 212 (673)
T KOG4378|consen 161 ---------------------IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ-GMSPIFHA------SEAHSAPCR 212 (673)
T ss_pred ---------------------cCCCCeEEEeecccccceeeEeeccCCeEEEEecc-CCCcccch------hhhccCCcC
Confidence 122345668899998877765 5 89999999998 44444332 578999999
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeE
Q 015290 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL 350 (409)
Q Consensus 272 ~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v 350 (409)
.++|+|..+.+|++.+.|..|.+||.+..+.. ..+.. ..+...++|+++|.+|+.|+. |.|
T Consensus 213 gicfspsne~l~vsVG~Dkki~~yD~~s~~s~----~~l~y--------------~~Plstvaf~~~G~~L~aG~s~G~~ 274 (673)
T KOG4378|consen 213 GICFSPSNEALLVSVGYDKKINIYDIRSQAST----DRLTY--------------SHPLSTVAFSECGTYLCAGNSKGEL 274 (673)
T ss_pred cceecCCccceEEEecccceEEEeeccccccc----ceeee--------------cCCcceeeecCCceEEEeecCCceE
Confidence 99999999889999999999999999976532 22222 358999999999999999976 999
Q ss_pred EEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCC
Q 015290 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 396 (409)
Q Consensus 351 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 396 (409)
..||++....++.++..|...+ ++++|.|..
T Consensus 275 i~YD~R~~k~Pv~v~sah~~sV---------------t~vafq~s~ 305 (673)
T KOG4378|consen 275 IAYDMRSTKAPVAVRSAHDASV---------------TRVAFQPSP 305 (673)
T ss_pred EEEecccCCCCceEeeecccce---------------eEEEeeecc
Confidence 9999998778999999999876 689998765
No 126
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=3.4e-22 Score=170.12 Aligned_cols=249 Identities=19% Similarity=0.300 Sum_probs=190.5
Q ss_pred ceeeehhccCCCCCcccc---CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCC
Q 015290 13 EWKCSQAFGERNPDEELQ---DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP 89 (409)
Q Consensus 13 ~w~~~~~~~~~~~~~~~~---h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (409)
.|.+.|. +.+.++..+. ..+.|.++.+.|||+.|++|+.-.++.|||+......
T Consensus 444 VWdis~p-g~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr---------------------- 500 (705)
T KOG0639|consen 444 VWDISQP-GNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR---------------------- 500 (705)
T ss_pred EeeccCC-CCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc----------------------
Confidence 4666665 3333333332 4678999999999999999999999999999865431
Q ss_pred ceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCccccccccccc
Q 015290 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (409)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (409)
...++..-. ....+++. +||.+..++|..||.|.|||+.+..+++.
T Consensus 501 ---ikaeltssa------------paCyALa~--spDakvcFsccsdGnI~vwDLhnq~~Vrq----------------- 546 (705)
T KOG0639|consen 501 ---IKAELTSSA------------PACYALAI--SPDAKVCFSCCSDGNIAVWDLHNQTLVRQ----------------- 546 (705)
T ss_pred ---hhhhcCCcc------------hhhhhhhc--CCccceeeeeccCCcEEEEEcccceeeec-----------------
Confidence 112233222 45677888 89999999999999999999998755443
Q ss_pred ccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccC
Q 015290 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (409)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~ 248 (409)
+.+|.+.+.|+.++++|..|-+| -|++|+-||++.
T Consensus 547 --------------------------------------------fqGhtDGascIdis~dGtklWTGGlDntvRcWDlre 582 (705)
T KOG0639|consen 547 --------------------------------------------FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE 582 (705)
T ss_pred --------------------------------------------ccCCCCCceeEEecCCCceeecCCCccceeehhhhh
Confidence 27999999999999999999999 999999999994
Q ss_pred CCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (409)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (409)
..+ +.. ....+.|.++..+|.+ .+++.|-.++.+.+-....... ..+ .-|..
T Consensus 583 grq-lqq--------hdF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~k-----yql-------------hlheS 634 (705)
T KOG0639|consen 583 GRQ-LQQ--------HDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPEK-----YQL-------------HLHES 634 (705)
T ss_pred hhh-hhh--------hhhhhhheecccCCCc-cceeeecccCcEEEEecCCccc-----eee-------------ccccc
Confidence 333 222 2235789999999999 9999999999888777655321 122 23467
Q ss_pred ceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290 329 SISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD 407 (409)
Q Consensus 329 ~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~ 407 (409)
.|.++.|.+.|+++++.+ |+-+-.|..-. |..+...+..... +++.+|.|.++|+|||.|..
T Consensus 635 cVLSlKFa~cGkwfvStGkDnlLnawrtPy-GasiFqskE~SsV----------------lsCDIS~ddkyIVTGSGdkk 697 (705)
T KOG0639|consen 635 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPY-GASIFQSKESSSV----------------LSCDISFDDKYIVTGSGDKK 697 (705)
T ss_pred EEEEEEecccCceeeecCchhhhhhccCcc-ccceeeccccCcc----------------eeeeeccCceEEEecCCCcc
Confidence 899999999999999765 69999999764 6555555443332 69999999999999999864
No 127
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=8.5e-21 Score=161.73 Aligned_cols=268 Identities=14% Similarity=0.217 Sum_probs=184.4
Q ss_pred cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (409)
Q Consensus 30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (409)
..+..|.||+|.++|+ +++|..+|.|.||+..+.+ ..+....|.
T Consensus 244 ~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~---------------------------~~k~~~aH~-------- 287 (626)
T KOG2106|consen 244 REKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNR---------------------------ISKQVHAHD-------- 287 (626)
T ss_pred ccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCce---------------------------EEeEeeecC--------
Confidence 3457899999999997 6799999999999986654 233334888
Q ss_pred ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (409)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (409)
+.|.++.. -.+| .|++|+.|+.|..||-.-.+. .+...+. ..+.+......... ++.|.
T Consensus 288 ----ggv~~L~~--lr~G-tllSGgKDRki~~Wd~~y~k~---r~~elPe---------~~G~iRtv~e~~~d--i~vGT 346 (626)
T KOG2106|consen 288 ----GGVFSLCM--LRDG-TLLSGGKDRKIILWDDNYRKL---RETELPE---------QFGPIRTVAEGKGD--ILVGT 346 (626)
T ss_pred ----CceEEEEE--ecCc-cEeecCccceEEecccccccc---ccccCch---------hcCCeeEEecCCCc--EEEee
Confidence 99999999 4677 566699999999999222221 1111111 11222222222222 11111
Q ss_pred ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (409)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (409)
. .+.|-.-.++.. ..+. ..+|......++.+|+.++++++ .|+.+++|+ . .+..... .-..
T Consensus 347 t--rN~iL~Gt~~~~---f~~~--v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~k~~wt~---------~~~d 408 (626)
T KOG2106|consen 347 T--RNFILQGTLENG---FTLT--VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-HKLEWTK---------IIED 408 (626)
T ss_pred c--cceEEEeeecCC---ceEE--EEecccceeeEEcCCChhheeeccCcceEEEcc-C-CceeEEE---------EecC
Confidence 1 112222222211 1111 26888899999999999999998 999999999 3 2322221 1346
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c
Q 015290 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (409)
Q Consensus 269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~ 347 (409)
++.++.|+|.| .+|.|...|...+.|..+..+ ...|.+ ..+++.++|+|+|.+||.|+ |
T Consensus 409 ~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~l-------v~~~~d-----------~~~ls~v~ysp~G~~lAvgs~d 468 (626)
T KOG2106|consen 409 PAECADFHPSG--VVAVGTATGRWFVLDTETQDL-------VTIHTD-----------NEQLSVVRYSPDGAFLAVGSHD 468 (626)
T ss_pred ceeEeeccCcc--eEEEeeccceEEEEeccccee-------EEEEec-----------CCceEEEEEcCCCCEEEEecCC
Confidence 78899999997 899999999999999988432 222211 35899999999999999998 4
Q ss_pred CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRR 406 (409)
Q Consensus 348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg 406 (409)
+.|+||-++.++..+.....+... .|+.+.||+|+++|.+-|-|-
T Consensus 469 ~~iyiy~Vs~~g~~y~r~~k~~gs--------------~ithLDwS~Ds~~~~~~S~d~ 513 (626)
T KOG2106|consen 469 NHIYIYRVSANGRKYSRVGKCSGS--------------PITHLDWSSDSQFLVSNSGDY 513 (626)
T ss_pred CeEEEEEECCCCcEEEEeeeecCc--------------eeEEeeecCCCceEEeccCce
Confidence 999999998777777766655442 127999999999999887663
No 128
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=5e-20 Score=161.36 Aligned_cols=257 Identities=10% Similarity=0.070 Sum_probs=166.4
Q ss_pred CCcEEEEEECCCCCEE-EEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 32 VDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~l-a~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
...+.+++|+|+++.+ ++++.++.|++||..+++. ...+..+.
T Consensus 30 ~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~--------- 73 (300)
T TIGR03866 30 GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV---------------------------IGTLPSGP--------- 73 (300)
T ss_pred CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE---------------------------EEeccCCC---------
Confidence 3456789999999876 5677889999999987652 23344333
Q ss_pred eeccceEEEEEEecCCCCEEEEE-eCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (409)
.+..+.| +|+++.++++ +.|+.+++||+.+.+......... ....+.+++++.+++.+.
T Consensus 74 ----~~~~~~~--~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~--------------~~~~~~~~~dg~~l~~~~ 133 (300)
T TIGR03866 74 ----DPELFAL--HPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGV--------------EPEGMAVSPDGKIVVNTS 133 (300)
T ss_pred ----CccEEEE--CCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCC--------------CcceEEECCCCCEEEEEe
Confidence 3567888 6888877654 568999999998876544332110 112233344555554443
Q ss_pred ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEE-e-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (409)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (409)
. ....+.+|+.++. ...... .....+.+++|+|++++++. + .++.|.+||++ .++.+..+...........
T Consensus 134 ~-~~~~~~~~d~~~~---~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~-~~~~~~~~~~~~~~~~~~~ 206 (300)
T TIGR03866 134 E-TTNMAHFIDTKTY---EIVDNV--LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVA-TRKVIKKITFEIPGVHPEA 206 (300)
T ss_pred c-CCCeEEEEeCCCC---eEEEEE--EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcC-cceeeeeeeeccccccccc
Confidence 2 1235667787652 222222 12234578999999998864 4 69999999998 5655554322211011111
Q ss_pred CceEEEEEeCCCCCEE-EEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe-
Q 015290 268 EVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR- 345 (409)
Q Consensus 268 ~~v~~~~~~p~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg- 345 (409)
.....++|+|++ +++ ++.+.++.+.+||+++++.. ..... ...+.+++|+|+|++|+++
T Consensus 207 ~~~~~i~~s~dg-~~~~~~~~~~~~i~v~d~~~~~~~----~~~~~--------------~~~~~~~~~~~~g~~l~~~~ 267 (300)
T TIGR03866 207 VQPVGIKLTKDG-KTAFVALGPANRVAVVDAKTYEVL----DYLLV--------------GQRVWQLAFTPDEKYLLTTN 267 (300)
T ss_pred CCccceEECCCC-CEEEEEcCCCCeEEEEECCCCcEE----EEEEe--------------CCCcceEEECCCCCEEEEEc
Confidence 234578899999 664 44455678999999876531 11111 2368899999999999876
Q ss_pred e-cCeEEEEEccCCCcceEEEecccCc
Q 015290 346 D-YMNLKLWDIRMDSTPVATFKIHEHL 371 (409)
Q Consensus 346 ~-~~~v~iwd~~~~~~~~~~~~~~~~~ 371 (409)
. ++.|++||++. ++++..++....+
T Consensus 268 ~~~~~i~v~d~~~-~~~~~~~~~~~~~ 293 (300)
T TIGR03866 268 GVSNDVSVIDVAA-LKVIKSIKVGRLP 293 (300)
T ss_pred CCCCeEEEEECCC-CcEEEEEEccccc
Confidence 3 49999999986 8888888765444
No 129
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=1.6e-21 Score=172.21 Aligned_cols=232 Identities=14% Similarity=0.218 Sum_probs=175.4
Q ss_pred CCCcEEE-EEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290 31 DVDIVSA-IEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (409)
Q Consensus 31 h~~~v~~-v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (409)
|.+-|.. ++|-+ ++..|++|++|..|.+|...+.. ++.+|++|+
T Consensus 56 ~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~---------------------------P~~~LkgH~------- 101 (745)
T KOG0301|consen 56 PKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE---------------------------PLYTLKGHK------- 101 (745)
T ss_pred CcceeeccceeccccCcceEeecccceEEEEecCCCC---------------------------chhhhhccc-------
Confidence 6677766 88876 55579999999999999998766 578899999
Q ss_pred cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (409)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (409)
..|.+++. ..++. +++||.|.++++|.+..-... ...+ +..+-....-+.. .+.+|
T Consensus 102 -----snVC~ls~--~~~~~-~iSgSWD~TakvW~~~~l~~~--l~gH-------------~asVWAv~~l~e~-~~vTg 157 (745)
T KOG0301|consen 102 -----SNVCSLSI--GEDGT-LISGSWDSTAKVWRIGELVYS--LQGH-------------TASVWAVASLPEN-TYVTG 157 (745)
T ss_pred -----cceeeeec--CCcCc-eEecccccceEEecchhhhcc--cCCc-------------chheeeeeecCCC-cEEec
Confidence 89999997 46665 999999999999987533221 1111 1111122222223 33333
Q ss_pred cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (409)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (409)
+. |.+|++|.- ++++++| .+|.+.|+.+++-+++.++-++.||.|++|++. +.++.. +.+|..
T Consensus 158 sa--DKtIklWk~-----~~~l~tf-~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~--ge~l~~-------~~ghtn 220 (745)
T KOG0301|consen 158 SA--DKTIKLWKG-----GTLLKTF-SGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD--GEVLLE-------MHGHTN 220 (745)
T ss_pred cC--cceeeeccC-----Cchhhhh-ccchhheeeeEEecCCCeEeecCCceEEEEecc--Cceeee-------eeccce
Confidence 33 889999987 4677777 899999999999988755444499999999996 666655 789999
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecC
Q 015290 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM 348 (409)
Q Consensus 269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~ 348 (409)
.|++++...++ ..+++++.|++++||+... |.+.+..- ...|+++.+-++|..++.|+||
T Consensus 221 ~vYsis~~~~~-~~Ivs~gEDrtlriW~~~e---~~q~I~lP----------------ttsiWsa~~L~NgDIvvg~SDG 280 (745)
T KOG0301|consen 221 FVYSISMALSD-GLIVSTGEDRTLRIWKKDE---CVQVITLP----------------TTSIWSAKVLLNGDIVVGGSDG 280 (745)
T ss_pred EEEEEEecCCC-CeEEEecCCceEEEeecCc---eEEEEecC----------------ccceEEEEEeeCCCEEEeccCc
Confidence 99999977777 8999999999999999763 33222221 2479999999999998888999
Q ss_pred eEEEEEccC
Q 015290 349 NLKLWDIRM 357 (409)
Q Consensus 349 ~v~iwd~~~ 357 (409)
.||||..+.
T Consensus 281 ~VrVfT~~k 289 (745)
T KOG0301|consen 281 RVRVFTVDK 289 (745)
T ss_pred eEEEEEecc
Confidence 999998763
No 130
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.2e-23 Score=184.56 Aligned_cols=191 Identities=22% Similarity=0.396 Sum_probs=163.4
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (409)
Q Consensus 29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (409)
.+|..+|-++.|+++..+|+.|+.+|+|++||++..+ .+++|.||.
T Consensus 67 ~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk---------------------------~vrtLtgh~------- 112 (825)
T KOG0267|consen 67 TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK---------------------------IVRTLTGHL------- 112 (825)
T ss_pred eccCCcceeeecCcchhhhcccccCCceeeeehhhhh---------------------------hhhhhhccc-------
Confidence 5599999999999999999999999999999999776 367889999
Q ss_pred cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (409)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (409)
..+.++.| +|-+.++++++.|..+++||++...+...
T Consensus 113 -----~~~~sv~f--~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~------------------------------------ 149 (825)
T KOG0267|consen 113 -----LNITSVDF--HPYGEFFASGSTDTDLKIWDIRKKGCSHT------------------------------------ 149 (825)
T ss_pred -----cCcceeee--ccceEEeccccccccceehhhhccCceee------------------------------------
Confidence 89999999 68999999999999999999985543322
Q ss_pred cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (409)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (409)
+ .+|...+.++.|+|+|++++.| .|..+++||+. .++.... +..|.
T Consensus 150 ------------------------~-~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~-agk~~~e-------f~~~e 196 (825)
T KOG0267|consen 150 ------------------------Y-KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT-AGKLSKE-------FKSHE 196 (825)
T ss_pred ------------------------e-cCCcceeEEEeecCCCceeeccCCcceeeeeccc-ccccccc-------ccccc
Confidence 2 5688889999999999999999 99999999998 6777665 78899
Q ss_pred CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (409)
Q Consensus 268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~ 347 (409)
+.+.++.|+|.. -++++|+.|+++++||+++-+... .... ....|.+++|+|++..+++|..
T Consensus 197 ~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe~I~----s~~~-------------~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 197 GKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFEVIS----SGKP-------------ETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred ccccccccCchh-hhhccCCCCceeeeeccceeEEee----ccCC-------------ccCCceeeeecCCceeeecCch
Confidence 999999999998 899999999999999998754321 1111 1357999999999999999864
No 131
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.5e-21 Score=170.22 Aligned_cols=224 Identities=20% Similarity=0.290 Sum_probs=174.1
Q ss_pred CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (409)
+-...-+.|+ ....||+|. ...|.+|+..++... ....-++
T Consensus 177 DfY~nlldWs-s~n~laVal-g~~vylW~~~s~~v~---------------------------~l~~~~~---------- 217 (484)
T KOG0305|consen 177 DFYLNLLDWS-SANVLAVAL-GQSVYLWSASSGSVT---------------------------ELCSFGE---------- 217 (484)
T ss_pred cHhhhHhhcc-cCCeEEEEe-cceEEEEecCCCceE---------------------------EeEecCC----------
Confidence 3345567888 455788876 457999999887631 1122224
Q ss_pred eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (409)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (409)
+.|+++.| +++|.+|++|..+|.|.|||..+.+.....
T Consensus 218 --~~vtSv~w--s~~G~~LavG~~~g~v~iwD~~~~k~~~~~-------------------------------------- 255 (484)
T KOG0305|consen 218 --ELVTSVKW--SPDGSHLAVGTSDGTVQIWDVKEQKKTRTL-------------------------------------- 255 (484)
T ss_pred --CceEEEEE--CCCCCEEEEeecCCeEEEEehhhccccccc--------------------------------------
Confidence 79999999 799999999999999999999876543321
Q ss_pred ccceeEEEecCCcccceeeeeeccc-cccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290 192 ENMATKIANVGNSVHARCQKVYPHA-HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (409)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (409)
.+ |...|-+++|+ +..+.+| .++.|..+|++.......+ +.+|...
T Consensus 256 -----------------------~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~-------~~~H~qe 303 (484)
T KOG0305|consen 256 -----------------------RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST-------LQGHRQE 303 (484)
T ss_pred -----------------------cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh-------hhcccce
Confidence 34 88999999998 6678889 9999999999954444442 6889999
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccC-CCEEEEee--
Q 015290 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD-- 346 (409)
Q Consensus 270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~sg~-- 346 (409)
|..+.|++++ .+||+|+.|+.+.|||.....+ .. .+..|.+.|.+++|+|- ..+||+|+
T Consensus 304 VCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p----~~-------------~~~~H~aAVKA~awcP~q~~lLAsGGGs 365 (484)
T KOG0305|consen 304 VCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEP----KF-------------TFTEHTAAVKALAWCPWQSGLLATGGGS 365 (484)
T ss_pred eeeeEECCCC-CeeccCCCccceEeccCCCccc----cE-------------EEeccceeeeEeeeCCCccCceEEcCCC
Confidence 9999999999 9999999999999999855332 12 23556899999999995 46888874
Q ss_pred -cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (409)
Q Consensus 347 -~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s 403 (409)
|++|++||..+ ++.+..+...... .++.|++..+-|+++-
T Consensus 366 ~D~~i~fwn~~~-g~~i~~vdtgsQV----------------csL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 366 ADRCIKFWNTNT-GARIDSVDTGSQV----------------CSLIWSKKYKELLSTH 406 (484)
T ss_pred cccEEEEEEcCC-CcEecccccCCce----------------eeEEEcCCCCEEEEec
Confidence 49999999986 7877777655543 6999999987666543
No 132
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=8.8e-22 Score=175.81 Aligned_cols=240 Identities=18% Similarity=0.294 Sum_probs=174.4
Q ss_pred CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (409)
+....+|+.+++-..++.++.. .++||.+...... .++...+++....
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~-----------------------~~~~~~~k~kqn~-------- 86 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFS-----------------------EKCNHRFKTKQNK-------- 86 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCC-----------------------cceeeecccccce--------
Confidence 4567888999998888888754 7889987654321 0111122222210
Q ss_pred eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (409)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (409)
--.+..|.|. +-+.++|++++..|.|.+||+.....
T Consensus 87 -~~S~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk~~r------------------------------------------ 122 (839)
T KOG0269|consen 87 -FYSAADVKWG-QLYSNLIATCSTNGVISVWDLNKSIR------------------------------------------ 122 (839)
T ss_pred -eeehhhcccc-cchhhhheeecCCCcEEEEecCcccc------------------------------------------
Confidence 0356678896 56788999999999999999975211
Q ss_pred ccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (409)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (409)
.+.+..| ..|...++++.|++. ..+|++| +||.|++||++ ......+ +.+....
T Consensus 123 ---------------nk~l~~f-~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR-~~~S~~t-------~~~nSES 178 (839)
T KOG0269|consen 123 ---------------NKLLTVF-NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR-SKKSKST-------FRSNSES 178 (839)
T ss_pred ---------------chhhhHh-hhhccceeeeeeccCCccEEEecCCCceEEEEeee-ccccccc-------ccccchh
Confidence 0112222 789999999999986 4677788 99999999999 5555544 4567788
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cC
Q 015290 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (409)
Q Consensus 270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~ 348 (409)
|+.+.|+|..+.+|+++...|.+.+||+|....+ ... +.+|.++|.++.|+|++.+||||+ |+
T Consensus 179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~---~~k-------------~~AH~GpV~c~nwhPnr~~lATGGRDK 242 (839)
T KOG0269|consen 179 IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC---EKK-------------LTAHNGPVLCLNWHPNREWLATGGRDK 242 (839)
T ss_pred hhceeeccCCCceEEEecCCceEEEeeccCchhH---HHH-------------hhcccCceEEEeecCCCceeeecCCCc
Confidence 9999999987789999999999999999986543 122 356789999999999999999998 69
Q ss_pred eEEEEEccCCCc--ceEEEecccCcccccccccCCCCccceeeEEEcCCCCe-EEEccc
Q 015290 349 NLKLWDIRMDST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FATGSY 404 (409)
Q Consensus 349 ~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-l~s~s~ 404 (409)
.|+|||... .+ ++.++.... +|.+++|-|+.++ ||+++.
T Consensus 243 ~vkiWd~t~-~~~~~~~tInTia----------------pv~rVkWRP~~~~hLAtcsm 284 (839)
T KOG0269|consen 243 MVKIWDMTD-SRAKPKHTINTIA----------------PVGRVKWRPARSYHLATCSM 284 (839)
T ss_pred cEEEEeccC-CCccceeEEeecc----------------eeeeeeeccCccchhhhhhc
Confidence 999999973 33 333333222 2369999998764 666653
No 133
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.88 E-value=7.5e-21 Score=167.42 Aligned_cols=269 Identities=14% Similarity=0.189 Sum_probs=200.9
Q ss_pred cEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceec
Q 015290 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (409)
Q Consensus 34 ~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (409)
.|..++|-|||..|+.+.. ..+.+||...+. .+.++++|.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~---------------------------llqtLKgHK------------ 53 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGT---------------------------LLQPLKGHK------------ 53 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcc---------------------------ccccccccc------------
Confidence 8999999999999888864 579999999887 367899999
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (409)
+.|++++| +.||+.|++|+.|+.|.+|...- .-+.++.+...+.|++|.+.+-...+|..+.
T Consensus 54 DtVycVAy--s~dGkrFASG~aDK~VI~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsLsd------------- 115 (1081)
T KOG1538|consen 54 DTVYCVAY--AKDGKRFASGSADKSVIIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSLSD------------- 115 (1081)
T ss_pred ceEEEEEE--ccCCceeccCCCceeEEEecccc---cceeeeccCCeeeEeecCchHHHhhhcchhh-------------
Confidence 89999999 89999999999999999997543 3344555666777887777776666665432
Q ss_pred ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEE
Q 015290 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (409)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (409)
.-+|..+... +.. ......+.+.+|..||++++.| .+|+|.+-+-. ..+...+ .+-.+..++|.+
T Consensus 116 --FglWS~~qK~----V~K--~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I-----~Rpgg~Nspiws 181 (1081)
T KOG1538|consen 116 --FGLWSPEQKS----VSK--HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKI-----ERPGGSNSPIWS 181 (1081)
T ss_pred --ccccChhhhh----HHh--hhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEE-----eCCCCCCCCceE
Confidence 3344443211 111 1234567899999999999999 99999998765 3333332 123567789999
Q ss_pred EEEeCCCC----CEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c
Q 015290 273 AEFHPIYC----NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (409)
Q Consensus 273 ~~~~p~~~----~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~ 347 (409)
++|+|... ..++......++.++.+..... .+ .+.+. -...++.+.++|.|++.|+ +
T Consensus 182 i~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I-gk-~r~L~----------------FdP~CisYf~NGEy~LiGGsd 243 (1081)
T KOG1538|consen 182 ICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI-GK-DRALN----------------FDPCCISYFTNGEYILLGGSD 243 (1081)
T ss_pred EEecCCCCCCccceEEEEeccceeEEEEecceee-cc-cccCC----------------CCchhheeccCCcEEEEccCC
Confidence 99998742 3677777777888877765321 10 01111 2456889999999999875 6
Q ss_pred CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCCC
Q 015290 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDNG 409 (409)
Q Consensus 348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i~ 409 (409)
+.+++|--+ |-.+.++.....++ +.++..|++++++.|+.||+|.
T Consensus 244 k~L~~fTR~--GvrLGTvg~~D~WI---------------WtV~~~PNsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 244 KQLSLFTRD--GVRLGTVGEQDSWI---------------WTVQAKPNSQYVVVGCQDGTIA 288 (1081)
T ss_pred CceEEEeec--CeEEeeccccceeE---------------EEEEEccCCceEEEEEccCeee
Confidence 999999864 77788887777776 8999999999999999999973
No 134
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=1.2e-19 Score=158.96 Aligned_cols=266 Identities=10% Similarity=0.096 Sum_probs=171.3
Q ss_pred CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceEEEEEEe
Q 015290 44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA 123 (409)
Q Consensus 44 ~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~ 123 (409)
+..+++++.|+.|.+||..+++ .+..+..+. .+.++.|
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~---------------------------~~~~~~~~~-------------~~~~l~~-- 38 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLE---------------------------VTRTFPVGQ-------------RPRGITL-- 38 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCc---------------------------eEEEEECCC-------------CCCceEE--
Confidence 3578899999999999998765 344555554 4678999
Q ss_pred cCCCCEE-EEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecC
Q 015290 124 APNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG 202 (409)
Q Consensus 124 s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 202 (409)
+|+++.+ ++++.++.|++||..+++......... ......+++++..++... ..++.+++||++
T Consensus 39 ~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--------------~~~~~~~~~~g~~l~~~~-~~~~~l~~~d~~ 103 (300)
T TIGR03866 39 SKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP--------------DPELFALHPNGKILYIAN-EDDNLVTVIDIE 103 (300)
T ss_pred CCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC--------------CccEEEECCCCCEEEEEc-CCCCeEEEEECC
Confidence 7899876 566788999999998876654322111 011223344444433222 136799999997
Q ss_pred CcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCC-eEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCC
Q 015290 203 NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL-RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 280 (409)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~-~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 280 (409)
+. +.+..+ .+...+.+++|+|++++++++ .++ .+.+||.. .......+ . ....+..++|+|++
T Consensus 104 ~~---~~~~~~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~-~~~~~~~~-------~-~~~~~~~~~~s~dg- 168 (300)
T TIGR03866 104 TR---KVLAEI--PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTK-TYEIVDNV-------L-VDQRPRFAEFTADG- 168 (300)
T ss_pred CC---eEEeEe--eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCC-CCeEEEEE-------E-cCCCccEEEECCCC-
Confidence 63 333333 223346789999999999988 554 56778987 44444331 1 12245679999999
Q ss_pred CEEE-EEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe-e-cCeEEEEEccC
Q 015290 281 NLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-YMNLKLWDIRM 357 (409)
Q Consensus 281 ~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg-~-~~~v~iwd~~~ 357 (409)
++|+ ++..++.|++||+++++.. ..+..+.... .........++|+|++++++.+ . ++.+.+||+.+
T Consensus 169 ~~l~~~~~~~~~v~i~d~~~~~~~----~~~~~~~~~~------~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 169 KELWVSSEIGGTVSVIDVATRKVI----KKITFEIPGV------HPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred CEEEEEcCCCCEEEEEEcCcceee----eeeeeccccc------ccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 7664 5556999999999987531 2221100000 0001123468899999986554 3 48899999975
Q ss_pred CCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEc-ccCCCC
Q 015290 358 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYRRDN 408 (409)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~-s~dg~i 408 (409)
++.+..+..+. .+ .+++|+|+|++|+++ +.+|+|
T Consensus 239 -~~~~~~~~~~~-~~---------------~~~~~~~~g~~l~~~~~~~~~i 273 (300)
T TIGR03866 239 -YEVLDYLLVGQ-RV---------------WQLAFTPDEKYLLTTNGVSNDV 273 (300)
T ss_pred -CcEEEEEEeCC-Cc---------------ceEEECCCCCEEEEEcCCCCeE
Confidence 66655543222 22 589999999999876 456654
No 135
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=7.1e-22 Score=159.61 Aligned_cols=261 Identities=15% Similarity=0.213 Sum_probs=180.8
Q ss_pred cCCCcEEEEEECCC----CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290 30 QDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (409)
Q Consensus 30 ~h~~~v~~v~~~~~----~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (409)
.|......++|+-| ..++|.|+.-|.|+|.|+..++ +...+.+|.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~---------------------------~~~~~~ghG---- 135 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ---------------------------CSKNYRGHG---- 135 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh---------------------------hccceeccC----
Confidence 37778888999874 3488999999999999998776 456789999
Q ss_pred ccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (409)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (409)
..|+.|.++| .+.++++++|.|.+||+|++++..+..++..
T Consensus 136 --------~sINeik~~p-~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG------------------------------ 176 (385)
T KOG1034|consen 136 --------GSINEIKFHP-DRPQLVLSASKDHSVRLWNIQTDVCVAVFGG------------------------------ 176 (385)
T ss_pred --------ccchhhhcCC-CCCcEEEEecCCceEEEEeccCCeEEEEecc------------------------------
Confidence 8999999986 5567999999999999999999887665431
Q ss_pred ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeee-------
Q 015290 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD------- 257 (409)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~------- 257 (409)
..+|.+.|.++.|+++|.+++++ .|.+|++|++.. .+....+.
T Consensus 177 ----------------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~-~~f~~~lE~s~~~~~ 227 (385)
T KOG1034|consen 177 ----------------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV-KEFKNKLELSITYSP 227 (385)
T ss_pred ----------------------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh-hHHhhhhhhhcccCC
Confidence 27899999999999999999998 999999999972 11100000
Q ss_pred -------------cCC-CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccc
Q 015290 258 -------------MKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323 (409)
Q Consensus 258 -------------~~~-~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (409)
++. .+-.-|..+|.|+.|- | .++++-|-++.|..|..-.-+.. +...............+
T Consensus 228 ~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g-d~ilSkscenaI~~w~pgkl~e~---~~~vkp~es~~Ti~~~~ 301 (385)
T KOG1034|consen 228 NKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G-DFILSKSCENAIVCWKPGKLEES---IHNVKPPESATTILGEF 301 (385)
T ss_pred CCccCcCCccccccccccccccccchHHHHHHH--h-hheeecccCceEEEEecchhhhh---hhccCCCccceeeeeEe
Confidence 000 0123467777788876 4 78999899999999986221110 00000000000000112
Q ss_pred cccccceeee--EeccCCCEEEEeec-CeEEEEEccCCCcc-eEEEecccCcccccccccCCCCccceeeEEEcCCCCeE
Q 015290 324 TEIIASISDI--KFANDGQHLLSRDY-MNLKLWDIRMDSTP-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 399 (409)
Q Consensus 324 ~~~~~~i~~~--~~s~~g~~l~sg~~-~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 399 (409)
.-....|+-+ +|.|-+++||.|.. |.|.+||++....+ ..++..+. +.-.|...+||.||.+|
T Consensus 302 ~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~-------------~~~tVRQ~sfS~dgs~l 368 (385)
T KOG1034|consen 302 DYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK-------------SGSTVRQTSFSRDGSIL 368 (385)
T ss_pred ccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc-------------ccceeeeeeecccCcEE
Confidence 2123345544 55666889999987 99999999863221 12222111 22234799999999999
Q ss_pred EEcccCCCC
Q 015290 400 ATGSYRRDN 408 (409)
Q Consensus 400 ~s~s~dg~i 408 (409)
+...+|++|
T Consensus 369 v~vcdd~~V 377 (385)
T KOG1034|consen 369 VLVCDDGTV 377 (385)
T ss_pred EEEeCCCcE
Confidence 999999987
No 136
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=1.3e-22 Score=165.93 Aligned_cols=237 Identities=17% Similarity=0.235 Sum_probs=174.1
Q ss_pred eeeeecCCCccccccccceeccceEEEEEEecCCC-CEEEEEeCCCeEEEEEcCCceeeeeeccCCCccccccccccccc
Q 015290 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (409)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (409)
.+..|.||. +.|.+++=+ |.. ..+++|+.||.|+|||+.+..+...+..+. +
T Consensus 58 Fv~~L~gHr------------dGV~~lakh--p~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~-------------G 110 (433)
T KOG0268|consen 58 FVGSLDGHR------------DGVSCLAKH--PNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHE-------------G 110 (433)
T ss_pred chhhccccc------------cccchhhcC--cchhhhhhccccCceEEEEehhhhhhhheeeccc-------------C
Confidence 456678888 899999985 444 578999999999999999887766554332 1
Q ss_pred CceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCc
Q 015290 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ 251 (409)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~ 251 (409)
.+....... ..++..|. |.+|+.|.++. .+++++ . ....+..+.-+..+..++++ ...|.|||.+ ...
T Consensus 111 ~V~Gi~v~~-~~~~tvgd---DKtvK~wk~~~----~p~~ti-l-g~s~~~gIdh~~~~~~FaTc-Ge~i~IWD~~-R~~ 178 (433)
T KOG0268|consen 111 LVRGICVTQ-TSFFTVGD---DKTVKQWKIDG----PPLHTI-L-GKSVYLGIDHHRKNSVFATC-GEQIDIWDEQ-RDN 178 (433)
T ss_pred ceeeEEecc-cceEEecC---CcceeeeeccC----Ccceee-e-cccccccccccccccccccc-Cceeeecccc-cCC
Confidence 111111111 23333333 88999999886 355555 2 23445666666666667665 2358999998 555
Q ss_pred eeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccccee
Q 015290 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (409)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 331 (409)
++.. +.-....|.++.|+|....+|+++..|+.|.+||++.+.+..+ .-. ...-+
T Consensus 179 Pv~s-------mswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~K----Vi~--------------~mRTN 233 (433)
T KOG0268|consen 179 PVSS-------MSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKK----VIL--------------TMRTN 233 (433)
T ss_pred ccce-------eecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccce----eee--------------ecccc
Confidence 6655 4555678999999998867888898999999999999875322 211 12457
Q ss_pred eeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 332 DIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 332 ~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
.++|+|.+-.+++|+ |..++.||++.-..++..+.+|...+ .+++|||.|+-+++||.|.+|
T Consensus 234 ~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV---------------~dVdfsptG~EfvsgsyDksI 296 (433)
T KOG0268|consen 234 TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAV---------------MDVDFSPTGQEFVSGSYDKSI 296 (433)
T ss_pred ceecCccccceeeccccccceehhhhhhcccchhhcccceeE---------------EEeccCCCcchhccccccceE
Confidence 899999776666776 49999999997778999999999987 699999999999999999987
No 137
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=2.7e-21 Score=169.15 Aligned_cols=282 Identities=14% Similarity=0.108 Sum_probs=181.5
Q ss_pred CccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (409)
Q Consensus 26 ~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (409)
.....|.+.|..+.|-|-...|++++.|.++++||+.+.... -...+.||+
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~-------------------------G~~~~~GH~---- 144 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV-------------------------GGRLNLGHT---- 144 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee-------------------------cceeecccc----
Confidence 445669999999999996678999999999999999987641 123478999
Q ss_pred ccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (409)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (409)
..|.+++|.| .+...|++|+.||.|.|||++-........+.... . ...++.
T Consensus 145 --------~SvkS~cf~~-~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~--~----~~~n~~------------- 196 (720)
T KOG0321|consen 145 --------GSVKSECFMP-TNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRI--Y----GRHNTA------------- 196 (720)
T ss_pred --------cccchhhhcc-CCCcceeeccCCCcEEEEEEeccchhhHHHHhhhh--h----ccccCC-------------
Confidence 8999999975 56668999999999999999865432221110000 0 000000
Q ss_pred ecccccccceeEEEecCCcccceeeeeeccccccceeE---EEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCC
Q 015290 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINS---ISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKP 260 (409)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~---l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~ 260 (409)
+ .......+.++.. .++...|.+ +.+..|...||++ .|+.|++||++......+.-....
T Consensus 197 p--------------tpskp~~kr~~k~-kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~ 261 (720)
T KOG0321|consen 197 P--------------TPSKPLKKRIRKW-KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS 261 (720)
T ss_pred C--------------CCCchhhcccccc-ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcc
Confidence 0 0000000111111 233333333 4445677788886 599999999994433322221222
Q ss_pred CcCcCc---cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEecc
Q 015290 261 SNMDDL---TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (409)
Q Consensus 261 ~~~~~~---~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 337 (409)
..+..| ...+.++..+..| .+|.+.+.|+.|.+|++++-... +...+.++. . ..--..-..+|
T Consensus 262 ~~~~t~skrs~G~~nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~s--P~~~~sg~~-----~------~sf~vks~lSp 327 (720)
T KOG0321|consen 262 DKYPTHSKRSVGQVNLILDSSG-TYLFASCTDNSIYFYNMRSLSIS--PVAEFSGKL-----N------SSFYVKSELSP 327 (720)
T ss_pred cCccCcccceeeeEEEEecCCC-CeEEEEecCCcEEEEeccccCcC--chhhccCcc-----c------ceeeeeeecCC
Confidence 223333 3467888888888 66666666999999999875321 112222210 0 01122345789
Q ss_pred CCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCC-CeEEEcccCCCC
Q 015290 338 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYRRDN 408 (409)
Q Consensus 338 ~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~l~s~s~dg~i 408 (409)
|+.+|++|+ |...++|.+.+.......+.+|...+ ++++|.|.. .-+++|++|-.+
T Consensus 328 d~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eV---------------t~V~w~pS~~t~v~TcSdD~~~ 385 (720)
T KOG0321|consen 328 DDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREV---------------TTVRWLPSATTPVATCSDDFRV 385 (720)
T ss_pred CCceEeccCCCcceeeeeecCccCChhhhhCcceEE---------------EEEeeccccCCCceeeccCcce
Confidence 999999997 59999999987677788888898876 799999853 346677888654
No 138
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=6.9e-20 Score=156.28 Aligned_cols=315 Identities=12% Similarity=0.083 Sum_probs=200.5
Q ss_pred CCccccCCCcEEEEEECCCCCEEEEEecCC--------eEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeee
Q 015290 25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGG--------RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE 96 (409)
Q Consensus 25 ~~~~~~h~~~v~~v~~~~~~~~la~~~~dg--------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (409)
+-...+|.+.|.|++.+||...+|+|-..| .+++||..+..- +..
T Consensus 97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T---------------------------L~V 149 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST---------------------------LHV 149 (626)
T ss_pred cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee---------------------------eee
Confidence 344566999999999999998999886665 489999765441 223
Q ss_pred ecCCCccccccccceeccceEEEEEEecCCCCEEEEE--eCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCce
Q 015290 97 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILS--TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (409)
Q Consensus 97 ~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (409)
+..-. ..|.+++|.+...|.+++.. +.+..+.+||...+...... ...+..++
T Consensus 150 ~g~f~------------~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~v-------------k~sne~v~ 204 (626)
T KOG2106|consen 150 IGFFD------------RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPV-------------KTSNEVVF 204 (626)
T ss_pred ecccc------------ccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcc-------------eeccceEE
Confidence 33223 68999999765556666654 66778999998765432211 11233444
Q ss_pred eccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCcee
Q 015290 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF 253 (409)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~ 253 (409)
.+.++|....+...-. .+.+.+|+.+.....+....|.......|.|++|.++|+ +++| .+|.|.||+.. ..+..
T Consensus 205 ~a~FHPtd~nliit~G--k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~-~~~~~ 280 (626)
T KOG2106|consen 205 LATFHPTDPNLIITCG--KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKG-TNRIS 280 (626)
T ss_pred EEEeccCCCcEEEEeC--CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCC-CceEE
Confidence 4555554433322211 568999999887766666666445567899999999985 7888 99999999997 44433
Q ss_pred eeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccc-------ccc-ccccccc----------
Q 015290 254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-------SAR-ILRDAAE---------- 315 (409)
Q Consensus 254 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~-------~~~-~~~~~~~---------- 315 (409)
+. ...|.+.|.+++.-.+| . |++|+.|..|..||-.-.++... .++ +.+.+.+
T Consensus 281 k~-------~~aH~ggv~~L~~lr~G-t-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~i 351 (626)
T KOG2106|consen 281 KQ-------VHAHDGGVFSLCMLRDG-T-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFI 351 (626)
T ss_pred eE-------eeecCCceEEEEEecCc-c-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceE
Confidence 33 24899999999999998 5 55599999999999332221100 000 0111000
Q ss_pred -----ccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEE---------EecccCcccc------
Q 015290 316 -----SHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVAT---------FKIHEHLRPK------ 374 (409)
Q Consensus 316 -----~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~---------~~~~~~~~~~------ 374 (409)
.........+|....+.++.+|+...+++++ |+.+++|+ . .++.-+ ...|...+-.
T Consensus 352 L~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~--~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G 428 (626)
T KOG2106|consen 352 LQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D--HKLEWTKIIEDPAECADFHPSGVVAVGTATG 428 (626)
T ss_pred EEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C--CceeEEEEecCceeEeeccCcceEEEeeccc
Confidence 0000012246888899999999888777776 59999998 2 222111 1111111000
Q ss_pred --------cccc-c-CCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 375 --------LCDL-Y-NNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 375 --------~~~~-~-~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
..++ . +.+ ...+..++|+|+|.+||.||.|+.|
T Consensus 429 ~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~i 471 (626)
T KOG2106|consen 429 RWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHI 471 (626)
T ss_pred eEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeE
Confidence 0000 0 011 2234799999999999999999875
No 139
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=2.1e-20 Score=165.13 Aligned_cols=299 Identities=13% Similarity=0.084 Sum_probs=193.4
Q ss_pred cccCCCcEEEEEECCCCC---EEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc
Q 015290 28 ELQDVDIVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~~~~---~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (409)
+-+|..+|+|+.|-|+.+ ++++|+.|+.|.+|.+.... ...+..+++|.
T Consensus 50 l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~-------------------------~~~i~~~~g~~--- 101 (764)
T KOG1063|consen 50 LDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEY-------------------------LIKIYTIQGHC--- 101 (764)
T ss_pred ccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehh-------------------------eEEEEeecCcc---
Confidence 445999999999999887 89999999999999998432 23567788877
Q ss_pred cccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCC--Cc-ccccccccccccCceeccCCCC
Q 015290 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDH--FP-FVSSENTLLAEKNFMNEHNPPS 181 (409)
Q Consensus 105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~ 181 (409)
..+.|+.- ......+.+.|+++.+||.+..+........+ .. ...|+.....++.
T Consensus 102 ---------~~~~cv~a----~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~--------- 159 (764)
T KOG1063|consen 102 ---------KECVCVVA----RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKT--------- 159 (764)
T ss_pred ---------eeEEEEEe----eeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCc---------
Confidence 55555543 22222233789999999996555222111111 11 0112222222222
Q ss_pred CceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCC---eEEEe-cCCeEEEEEccCCC-------
Q 015290 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE---TFVSA-DDLRINLWNLEISD------- 250 (409)
Q Consensus 182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~---~l~~~-~d~~i~lwd~~~~~------- 250 (409)
-.++.|+. +..+.++.-.. ...+.+..+ .+|.+.|.+++|...+. +|+++ +|..|+||.+...+
T Consensus 160 -~lla~Ggs--~~~v~~~s~~~-d~f~~v~el-~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~ 234 (764)
T KOG1063|consen 160 -FLLACGGS--KFVVDLYSSSA-DSFARVAEL-EGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNER 234 (764)
T ss_pred -EEEEecCc--ceEEEEeccCC-cceeEEEEe-eccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccc
Confidence 22233322 33455554432 123333444 89999999999976543 66778 99999999986332
Q ss_pred -------------ceeeeeec--CC-CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccc
Q 015290 251 -------------QCFNIVDM--KP-SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA 314 (409)
Q Consensus 251 -------------~~~~~~~~--~~-~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 314 (409)
.....+.+ .. .-+.+|.++|+++.|+|.+ ..|+++|.|.++.+|......-.. ....+.
T Consensus 235 e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGiW--v~~vRl-- 309 (764)
T KOG1063|consen 235 EDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGIW--VDVVRL-- 309 (764)
T ss_pred ccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccch-hhheecccCcceEEEecCCccceE--EEEEEe--
Confidence 01101110 00 1235899999999999999 899999999999999876542111 011111
Q ss_pred cccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCC--cceEEEecccCcccccccccCCCCccceeeEE
Q 015290 315 ESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECS 391 (409)
Q Consensus 315 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 391 (409)
....+.........|+|++..+++-+. |..++|...... .....+.||...+ .+++
T Consensus 310 ------Ge~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V---------------~dv~ 368 (764)
T KOG1063|consen 310 ------GEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGV---------------KDVD 368 (764)
T ss_pred ------ecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccc---------------eeee
Confidence 001122356888999999988888776 999999932111 3455677888876 6999
Q ss_pred EcCCCCeEEEcccCCC
Q 015290 392 VSGDGLHFATGSYRRD 407 (409)
Q Consensus 392 ~spdg~~l~s~s~dg~ 407 (409)
|+|.|.+|++.|.|.+
T Consensus 369 W~psGeflLsvs~DQT 384 (764)
T KOG1063|consen 369 WDPSGEFLLSVSLDQT 384 (764)
T ss_pred ecCCCCEEEEeccccc
Confidence 9999999999999975
No 140
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=3.8e-21 Score=158.12 Aligned_cols=167 Identities=18% Similarity=0.195 Sum_probs=133.1
Q ss_pred ceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEE
Q 015290 207 ARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 284 (409)
Q Consensus 207 ~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 284 (409)
..++.++ .+|...=..|+|||- ...|++| .-+.|++|.... +.-. +....+.+|...|..++|+|....+|+
T Consensus 201 ~~Pl~t~-~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~-g~W~----vd~~Pf~gH~~SVEDLqWSptE~~vfa 274 (440)
T KOG0302|consen 201 FRPLFTF-NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST-GSWK----VDQRPFTGHTKSVEDLQWSPTEDGVFA 274 (440)
T ss_pred cCceEEe-cccCccceeeecccccccccccCccccceEeeeecc-Ccee----ecCccccccccchhhhccCCccCceEE
Confidence 3556666 889988899999994 2358889 889999999883 3211 122347789999999999998878999
Q ss_pred EEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccC--CCcc
Q 015290 285 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM--DSTP 361 (409)
Q Consensus 285 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~--~~~~ 361 (409)
+||.||+|+|||+|.+... ..++ .+.|.+.|+.+.|+-+-.+||+|+| |+++|||++. .+++
T Consensus 275 ScS~DgsIrIWDiRs~~~~---~~~~------------~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~p 339 (440)
T KOG0302|consen 275 SCSCDGSIRIWDIRSGPKK---AAVS------------TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQP 339 (440)
T ss_pred eeecCceEEEEEecCCCcc---ceeE------------eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCc
Confidence 9999999999999997421 0111 1456789999999998889999987 9999999984 3688
Q ss_pred eEEEecccCcccccccccCCCCccceeeEEEcCC-CCeEEEcccCCCCC
Q 015290 362 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYRRDNG 409 (409)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~s~s~dg~i~ 409 (409)
+..|+.|..++ +++.|+|. ...|++++.|..|+
T Consensus 340 VA~fk~Hk~pI---------------tsieW~p~e~s~iaasg~D~Qit 373 (440)
T KOG0302|consen 340 VATFKYHKAPI---------------TSIEWHPHEDSVIAASGEDNQIT 373 (440)
T ss_pred ceeEEeccCCe---------------eEEEeccccCceEEeccCCCcEE
Confidence 99999999987 79999995 55788888888763
No 141
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=7.8e-22 Score=183.65 Aligned_cols=266 Identities=14% Similarity=0.210 Sum_probs=194.0
Q ss_pred ceeeehhccCC--CCCccccCCCcEEEEEECCCCCE----EEEEecCCeEEEEeccCCcCCCCccchhhhhhhccccccc
Q 015290 13 EWKCSQAFGER--NPDEELQDVDIVSAIEFDKTGDY----LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST 86 (409)
Q Consensus 13 ~w~~~~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~----la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (409)
.|++....... .+...++-..+.+.++|.+.|.. ||.|..||.|.+||...-..
T Consensus 43 ifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~-------------------- 102 (1049)
T KOG0307|consen 43 IFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA-------------------- 102 (1049)
T ss_pred eeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhcc--------------------
Confidence 45555443332 34555566788999999997765 88899999999999875210
Q ss_pred CCCceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccc
Q 015290 87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT 166 (409)
Q Consensus 87 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 166 (409)
..+...+..+..|+ +.|..+.|++ -.+..|++|+.||.|.|||+++-+.-....
T Consensus 103 -~~~~~~la~~~~h~------------G~V~gLDfN~-~q~nlLASGa~~geI~iWDlnn~~tP~~~~------------ 156 (1049)
T KOG0307|consen 103 -NASEEVLATKSKHT------------GPVLGLDFNP-FQGNLLASGADDGEILIWDLNKPETPFTPG------------ 156 (1049)
T ss_pred -CcchHHHhhhcccC------------Cceeeeeccc-cCCceeeccCCCCcEEEeccCCcCCCCCCC------------
Confidence 00223566778888 9999999953 344599999999999999998743211100
Q ss_pred cccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEE
Q 015290 167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLW 244 (409)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lw 244 (409)
-......|.+++|+.. ...|+++ .+|.+.||
T Consensus 157 -----------------------------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iW 189 (1049)
T KOG0307|consen 157 -----------------------------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIW 189 (1049)
T ss_pred -----------------------------------------------CCCCcccceEeccchhhhHHhhccCCCCCceec
Confidence 0234567999999986 4566777 89999999
Q ss_pred EccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC---CeEEEEeCCCccccccccccccccccccCCcc
Q 015290 245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKS 321 (409)
Q Consensus 245 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (409)
|++.....+..- .......+..++|+|++...+++++.| -.|.+||+|.... ..++++
T Consensus 190 Dlr~~~pii~ls------~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass---P~k~~~---------- 250 (1049)
T KOG0307|consen 190 DLRKKKPIIKLS------DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS---PLKILE---------- 250 (1049)
T ss_pred cccCCCcccccc------cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC---chhhhc----------
Confidence 999544444321 122224578999999987777777765 3699999987432 234444
Q ss_pred cccccccceeeeEeccCC-CEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCC-e
Q 015290 322 FFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-H 398 (409)
Q Consensus 322 ~~~~~~~~i~~~~~s~~g-~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~ 398 (409)
+|...|.++.|++.+ ++|++++ |+.|.+|+..+ ++.+..+....++. +.+.|+|... .
T Consensus 251 ---~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t-gEvl~~~p~~~nW~---------------fdv~w~pr~P~~ 311 (1049)
T KOG0307|consen 251 ---GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT-GEVLGELPAQGNWC---------------FDVQWCPRNPSV 311 (1049)
T ss_pred ---ccccceeeeccCCCCchhhhcccCCCCeeEecCCC-ceEeeecCCCCcce---------------eeeeecCCCcch
Confidence 457889999999977 7777765 69999999987 89999998877775 6999999765 8
Q ss_pred EEEcccCCCCC
Q 015290 399 FATGSYRRDNG 409 (409)
Q Consensus 399 l~s~s~dg~i~ 409 (409)
++.++-||.|.
T Consensus 312 ~A~asfdgkI~ 322 (1049)
T KOG0307|consen 312 MAAASFDGKIS 322 (1049)
T ss_pred hhhheecccee
Confidence 88999999873
No 142
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=4.3e-20 Score=149.11 Aligned_cols=299 Identities=12% Similarity=0.096 Sum_probs=202.4
Q ss_pred CcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccccee
Q 015290 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (409)
Q Consensus 33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (409)
.....+.|+|||.-|++-+.|..+.+|++....... ...+ ...+..|. ......
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~-------------------~~~~--~~~~~~~~-----~~r~~e 103 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSK-------------------KADG--PLNFSKHL-----SYRYQE 103 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhccc-------------------CCCC--ccccccce-----eEEecc
Confidence 456688999999999999999999999986432100 0000 00001111 000011
Q ss_pred ccceEEEEEEe-----cCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290 113 EEKINRVRWCA-----APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (409)
Q Consensus 113 ~~~v~~l~~~~-----s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
...|..-+|.+ .|+..++++.+.|.-|++||.-+++.......-... ..--...+..+++++..++.
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~--------de~taAhsL~Fs~DGeqlfa 175 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQ--------DEYTAAHSLQFSPDGEQLFA 175 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhH--------HhhhhheeEEecCCCCeEee
Confidence 14678888875 477789999999999999999999877654321110 11123345566777777777
Q ss_pred ccccccceeEEEecCC-cccceeeeeec---cccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCceeeeeecCCC
Q 015290 188 LEWTENMATKIANVGN-SVHARCQKVYP---HAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (409)
Q Consensus 188 ~~~~~~~~i~~~~~~~-~~~~~~~~~~~---~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~ 261 (409)
|. ...|+++|+.. ........++. .+..+-+.+++|+|.. +.++.| ...++-||.-. .+.++.+
T Consensus 176 Gy---krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~-~~~pl~l------ 245 (406)
T KOG2919|consen 176 GY---KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD-GRRPLQL------ 245 (406)
T ss_pred cc---cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC-CCCceee------
Confidence 65 67899999943 22222222221 2346678899999965 478888 88888888877 5666666
Q ss_pred cCcCccCceEEEEEeCCCCCEEEEEeC-CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC
Q 015290 262 NMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (409)
Q Consensus 262 ~~~~~~~~v~~~~~~p~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 340 (409)
+.+|.+.|+.++|.++| +.|.+|+. |..|..||+|..... +..+..|.... ..-.-....|+|+
T Consensus 246 -lggh~gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~~~~p---v~~L~rhv~~T----------NQRI~FDld~~~~ 310 (406)
T KOG2919|consen 246 -LGGHGGGVTHLQWCEDG-NKLFSGARKDDKILCWDIRYSRDP---VYALERHVGDT----------NQRILFDLDPKGE 310 (406)
T ss_pred -ecccCCCeeeEEeccCc-CeecccccCCCeEEEEeehhccch---hhhhhhhccCc----------cceEEEecCCCCc
Confidence 67999999999999999 78887764 778999999985532 23334432111 1222355678999
Q ss_pred EEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290 341 HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR 405 (409)
Q Consensus 341 ~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d 405 (409)
+|++|+ +|.|++||++..+..+..+..+..-+ ..++++|-=.++|+++..
T Consensus 311 ~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~v---------------NgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 311 ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTV---------------NGVSLNPIMPILATSSGQ 361 (406)
T ss_pred eeeccCCCccEEEEecCCCCCcccccccccccc---------------cceecCcccceeeeccCc
Confidence 999996 69999999987677777777776654 489999987788877654
No 143
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=4.8e-21 Score=152.70 Aligned_cols=225 Identities=12% Similarity=0.164 Sum_probs=160.3
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCce---eccC-CCCCceeeccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM---NEHN-PPSFAHGYHLE 189 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~ 189 (409)
+.|+++..-+ ..|+++++|+.||.|.+||+++-.......+ .....|.+.....++.-. +..| .-+..++.+++
T Consensus 44 GsvNsL~id~-tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS 121 (397)
T KOG4283|consen 44 GSVNSLQIDL-TEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS 121 (397)
T ss_pred Cccceeeecc-ccceEEeecCCCccEEEEEeccccchhhccc-eeheeeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence 8999999964 6899999999999999999986431111000 001112222222222211 1122 22345566666
Q ss_pred ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC---CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (409)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (409)
| |.++++||.++. +....| .-.+.|.+-+++|- .-++|+| .+-.|++-|+. .+....+ +.+
T Consensus 122 F--DhtlKVWDtnTl---Q~a~~F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~-SGs~sH~-------LsG 186 (397)
T KOG4283|consen 122 F--DHTLKVWDTNTL---QEAVDF--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA-SGSFSHT-------LSG 186 (397)
T ss_pred c--cceEEEeecccc---eeeEEe--ecCceeehhhcChhhhcceEEEEecCCCcEEEEecc-CCcceee-------ecc
Confidence 6 899999999873 333333 34566888888874 3466778 89999999999 7777776 799
Q ss_pred ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccc-cccCCcccccccccceeeeEeccCCCEEEE
Q 015290 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA-ESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (409)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s 344 (409)
|.+.|.++.|+|..+-.|++|+.||.|++||+|...-| ...+..|. ..++....-..|.+.++.++|+.||.++++
T Consensus 187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc---f~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~ 263 (397)
T KOG4283|consen 187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC---FRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLAS 263 (397)
T ss_pred ccCceEEEEeccCceeEEEecCCCceEEEEEeecccce---eEEeecccCccCccccccccccceeeeeeecccchhhhh
Confidence 99999999999998778999999999999999986544 35555543 223333355688999999999999999998
Q ss_pred ee-cCeEEEEEccCC
Q 015290 345 RD-YMNLKLWDIRMD 358 (409)
Q Consensus 345 g~-~~~v~iwd~~~~ 358 (409)
.+ |..+++|+...+
T Consensus 264 ~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 264 CGTDDRIRVWNMESG 278 (397)
T ss_pred ccCccceEEeecccC
Confidence 65 799999998763
No 144
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=3.9e-21 Score=161.26 Aligned_cols=208 Identities=18% Similarity=0.250 Sum_probs=161.9
Q ss_pred ccccCCCcEEEEEECCC-CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290 27 EELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (409)
Q Consensus 27 ~~~~h~~~v~~v~~~~~-~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (409)
...+|++.|.+++|+.. ...||+||.|.+|++||+.+++ +..++..|.
T Consensus 238 ~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~---------------------------p~~s~~~~~---- 286 (463)
T KOG0270|consen 238 SASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK---------------------------PKSSITHHG---- 286 (463)
T ss_pred ccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC---------------------------cceehhhcC----
Confidence 34569999999999984 4689999999999999999887 456777787
Q ss_pred ccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (409)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (409)
+.|.++.|+| .....|++|+.|++|.+.|.+....
T Consensus 287 --------k~Vq~l~wh~-~~p~~LLsGs~D~~V~l~D~R~~~~------------------------------------ 321 (463)
T KOG0270|consen 287 --------KKVQTLEWHP-YEPSVLLSGSYDGTVALKDCRDPSN------------------------------------ 321 (463)
T ss_pred --------CceeEEEecC-CCceEEEeccccceEEeeeccCccc------------------------------------
Confidence 8999999985 6778999999999999999985211
Q ss_pred ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (409)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (409)
.-+-|. -.+.|-.++|+|.. ..++++ .||+++-+|+|..++++.+ +
T Consensus 322 ---------s~~~wk----------------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt-------~ 369 (463)
T KOG0270|consen 322 ---------SGKEWK----------------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT-------L 369 (463)
T ss_pred ---------cCceEE----------------eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE-------E
Confidence 011121 23567789998875 445567 9999999999987788877 6
Q ss_pred cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC-EE
Q 015290 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HL 342 (409)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l 342 (409)
..|.+.|.++++++..+.++++++.|+.+++|++..........+.+.. +...|.++.|+-. ++
T Consensus 370 ~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~---------------~rl~c~~~~~~~a~~l 434 (463)
T KOG0270|consen 370 KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKL---------------GRLHCFALDPDVAFTL 434 (463)
T ss_pred EeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccc---------------cceeecccCCCcceEE
Confidence 8999999999999998889999999999999998765432111122222 3467788888765 45
Q ss_pred EEeec-CeEEEEEccC
Q 015290 343 LSRDY-MNLKLWDIRM 357 (409)
Q Consensus 343 ~sg~~-~~v~iwd~~~ 357 (409)
|.|+. +.++|||+.+
T Consensus 435 a~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 435 AFGGEKAVLRVWDIFT 450 (463)
T ss_pred EecCccceEEEeeccc
Confidence 55665 8899999975
No 145
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.8e-20 Score=149.32 Aligned_cols=235 Identities=18% Similarity=0.211 Sum_probs=165.0
Q ss_pred ccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (409)
Q Consensus 27 ~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (409)
..+.|..++.+++|.++ ..+++|+.||.|+++|+.++.. ..+..|.
T Consensus 49 ~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~----------------------------~~igth~----- 94 (323)
T KOG1036|consen 49 LKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE----------------------------DQIGTHD----- 94 (323)
T ss_pred hheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc----------------------------eeeccCC-----
Confidence 34558999999999975 5688999999999999998764 3456777
Q ss_pred cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (409)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (409)
++|.+|.+ .+....+++|+.|++|++||.++........ ....+.+....++ .+.
T Consensus 95 -------~~i~ci~~--~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--------------~~kkVy~~~v~g~--~Lv 149 (323)
T KOG1036|consen 95 -------EGIRCIEY--SYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--------------QGKKVYCMDVSGN--RLV 149 (323)
T ss_pred -------CceEEEEe--eccCCeEEEcccCccEEEEeccccccccccc--------------cCceEEEEeccCC--EEE
Confidence 89999999 4666799999999999999998632222111 1112222222111 122
Q ss_pred cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (409)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (409)
.|. .+..+.+||+.+.......+. ......++|+++-|++.-++.+ -||+|.+=.++.. +..+. +...+..
T Consensus 150 Vg~--~~r~v~iyDLRn~~~~~q~re--S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s-~~~~s---kkyaFkC 221 (323)
T KOG1036|consen 150 VGT--SDRKVLIYDLRNLDEPFQRRE--SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDS-EEAQS---KKYAFKC 221 (323)
T ss_pred Eee--cCceEEEEEcccccchhhhcc--ccceeEEEEEEEecCCCceEEEeecceEEEEccCCc-hHHhh---hceeEEe
Confidence 211 166899999987554443332 3556678999999988778877 9999988666622 11110 0011334
Q ss_pred cc---------CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEec
Q 015290 266 LT---------EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (409)
Q Consensus 266 ~~---------~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 336 (409)
|. .+|++++|+|-. ..|+||+.||.|.+||+.+.+. ++.+.. ....|.+++|+
T Consensus 222 Hr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~rKr----l~q~~~-------------~~~SI~slsfs 283 (323)
T KOG1036|consen 222 HRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNRKR----LKQLAK-------------YETSISSLSFS 283 (323)
T ss_pred eecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcchhh----hhhccC-------------CCCceEEEEec
Confidence 42 478999999997 9999999999999999988653 233322 13579999999
Q ss_pred cCCCEEEEee
Q 015290 337 NDGQHLLSRD 346 (409)
Q Consensus 337 ~~g~~l~sg~ 346 (409)
.||..||.++
T Consensus 284 ~dG~~LAia~ 293 (323)
T KOG1036|consen 284 MDGSLLAIAS 293 (323)
T ss_pred cCCCeEEEEe
Confidence 9999999885
No 146
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.87 E-value=2.1e-20 Score=148.60 Aligned_cols=251 Identities=18% Similarity=0.221 Sum_probs=172.7
Q ss_pred CCCcEEEEEECC-CCCEEEEEecC-------CeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeec-CCC
Q 015290 31 DVDIVSAIEFDK-TGDYLAVGDRG-------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHE 101 (409)
Q Consensus 31 h~~~v~~v~~~~-~~~~la~~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~ 101 (409)
|.+.|+.++-+| +.+.|+++-.+ -.+-||.+...... +.+...+++..+. .+-
T Consensus 62 ~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~------------------S~~~tlE~v~~Ldteav 123 (370)
T KOG1007|consen 62 HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ------------------SNSSTLECVASLDTEAV 123 (370)
T ss_pred CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc------------------cccchhhHhhcCCHHHh
Confidence 688999999999 66778877542 23678988754421 0011122333332 222
Q ss_pred ccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceee-eeeccCCCcccccccccccccCceeccCCC
Q 015290 102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180 (409)
Q Consensus 102 ~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (409)
+.|.||.|. |++..+++-. |..|.+|++.++... .....
T Consensus 124 ------------g~i~cvew~--Pns~klasm~-dn~i~l~~l~ess~~vaev~s------------------------- 163 (370)
T KOG1007|consen 124 ------------GKINCVEWE--PNSDKLASMD-DNNIVLWSLDESSKIVAEVLS------------------------- 163 (370)
T ss_pred ------------CceeeEEEc--CCCCeeEEec-cCceEEEEcccCcchheeecc-------------------------
Confidence 689999995 7888888776 788999999876442 11000
Q ss_pred CCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCC--CCCeEEEecCCeEEEEEccCCCceeeeeec
Q 015290 181 SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSADDLRINLWNLEISDQCFNIVDM 258 (409)
Q Consensus 181 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~ 258 (409)
.+ ..+++...++-+|+| +++.+++..|+++..||+++..+...+
T Consensus 164 ------s~-------------------------s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI--- 209 (370)
T KOG1007|consen 164 ------SE-------------------------SAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSI--- 209 (370)
T ss_pred ------cc-------------------------cccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcch---
Confidence 00 023455667788988 688888889999999999954444443
Q ss_pred CCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccC
Q 015290 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (409)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 338 (409)
-..|...|..+.|+|+...+|++|+.||.|++||.|+.+.. ...+.+|..+++++.|+|.
T Consensus 210 ----~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p----------------v~el~~HsHWvW~VRfn~~ 269 (370)
T KOG1007|consen 210 ----EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP----------------VQELPGHSHWVWAVRFNPE 269 (370)
T ss_pred ----hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc----------------ccccCCCceEEEEEEecCc
Confidence 46788899999999998779999999999999999985531 1223567889999999996
Q ss_pred C-CEEEEee-cCeEEEEEccCCC----------------------------cceEEEecccCcccccccccCCCCcccee
Q 015290 339 G-QHLLSRD-YMNLKLWDIRMDS----------------------------TPVATFKIHEHLRPKLCDLYNNDSIFDKF 388 (409)
Q Consensus 339 g-~~l~sg~-~~~v~iwd~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 388 (409)
- ++|++|+ |..|.+|....-. ..+.++..|+ +++ +
T Consensus 270 hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE------------DSV---Y 334 (370)
T KOG1007|consen 270 HDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE------------DSV---Y 334 (370)
T ss_pred cceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc------------cce---E
Confidence 5 5677775 6999999764211 0112223333 333 5
Q ss_pred eEEEcCCCC-eEEEcccCCCC
Q 015290 389 ECSVSGDGL-HFATGSYRRDN 408 (409)
Q Consensus 389 ~~~~spdg~-~l~s~s~dg~i 408 (409)
+++||.-.. .+|+-|.||.+
T Consensus 335 ~~aWSsadPWiFASLSYDGRv 355 (370)
T KOG1007|consen 335 ALAWSSADPWIFASLSYDGRV 355 (370)
T ss_pred EEeeccCCCeeEEEeccCceE
Confidence 999997555 57789999865
No 147
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=2.2e-20 Score=155.20 Aligned_cols=182 Identities=18% Similarity=0.312 Sum_probs=140.2
Q ss_pred CCcEEEEEECCCCC-EEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 32 VDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 32 ~~~v~~v~~~~~~~-~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
..+|.++.|.++.. .||||+.|..|+||.+....... ..+..+++..|..|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~------------------~~~~V~y~s~Ls~H~--------- 65 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG------------------GDMKVEYLSSLSRHT--------- 65 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCC------------------CceeEEEeecccCCc---------
Confidence 46899999999766 99999999999999988655310 002345677888888
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
.+|+.+.| +|+|..|++|+.+|.|.+|....-... .. .
T Consensus 66 ---~aVN~vRf--~p~gelLASg~D~g~v~lWk~~~~~~~---~~---d------------------------------- 103 (434)
T KOG1009|consen 66 ---RAVNVVRF--SPDGELLASGGDGGEVFLWKQGDVRIF---DA---D------------------------------- 103 (434)
T ss_pred ---ceeEEEEE--cCCcCeeeecCCCceEEEEEecCcCCc---cc---c-------------------------------
Confidence 89999999 799999999999999999987641110 00 0
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (409)
. ..+...+...++..+.+|...|..++|+|++.+++++ .|..+++||+. .+..... +.+|...
T Consensus 104 ---~-----e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~-~G~l~~~-------~~dh~~y 167 (434)
T KOG1009|consen 104 ---T-----EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH-AGQLLAI-------LDDHEHY 167 (434)
T ss_pred ---c-----hhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec-cceeEee-------ccccccc
Confidence 0 0000000122222237899999999999999999999 99999999999 7877777 7889999
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEeCCC
Q 015290 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (409)
Q Consensus 270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~ 299 (409)
+..++|.|.+ +++++-+.|...+.+.+..
T Consensus 168 vqgvawDpl~-qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 168 VQGVAWDPLN-QYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred cceeecchhh-hhhhhhccCcccceeeeee
Confidence 9999999999 9999999998777776654
No 148
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.8e-20 Score=149.94 Aligned_cols=254 Identities=15% Similarity=0.202 Sum_probs=161.0
Q ss_pred eeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCc
Q 015290 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (409)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (409)
+..|++|. +.|++++| +.||++|++++.|++|++|+++....+.-. ++......+..
T Consensus 79 ~~~LKgH~------------~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr---------~~R~nve~dhp 135 (420)
T KOG2096|consen 79 VSVLKGHK------------KEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKEHR---------CIRQNVEYDHP 135 (420)
T ss_pred hhhhhccC------------CceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhhhh---------HhhccccCCCc
Confidence 45678888 99999999 899999999999999999999864322110 00001111222
Q ss_pred eeccCCCCC-ceeecccccccceeEEEecCCcccceeee--------eeccccccceeEEEeCCCCCeEEEe-cCCeEEE
Q 015290 174 MNEHNPPSF-AHGYHLEWTENMATKIANVGNSVHARCQK--------VYPHAHDFNINSISNNSDCETFVSA-DDLRINL 243 (409)
Q Consensus 174 ~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~l 243 (409)
....+.++. .++.... .+.++++|.+.....+.... .|...|+-.+..+-...++++++++ .|..|.|
T Consensus 136 T~V~FapDc~s~vv~~~--~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~l 213 (420)
T KOG2096|consen 136 TRVVFAPDCKSVVVSVK--RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICL 213 (420)
T ss_pred eEEEECCCcceEEEEEc--cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEE
Confidence 222233222 2222222 24567777665433322111 1224466667777777788999999 9999999
Q ss_pred EEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccc
Q 015290 244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323 (409)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (409)
|+++ ++.+..++.. ...-+..+.+|+| +++++++...-|++|++--++- ..++. -...-.+
T Consensus 214 w~lk--Gq~L~~idtn-------q~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kd-----G~fqe----v~rvf~L 274 (420)
T KOG2096|consen 214 WDLK--GQLLQSIDTN-------QSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKD-----GTFQE----VKRVFSL 274 (420)
T ss_pred EecC--Cceeeeeccc-------cccccceeeCCCC-cEEEEecCCCCceEEEEEeccC-----cchhh----hhhhhee
Confidence 9998 7777775332 2334678899999 9999999999999998632211 01110 0011235
Q ss_pred cccccceeeeEeccCCCEEEEee-cCeEEEEEccC------CCcceEEEecccCcccccccccCCCCccceeeEEEcCCC
Q 015290 324 TEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM------DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 396 (409)
Q Consensus 324 ~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 396 (409)
.+|...|..++|+|+.+.+++.+ ||.++|||.+- +.+.+.+....... ..-....++.+|.|
T Consensus 275 kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~a-----------ag~~p~RL~lsP~g 343 (420)
T KOG2096|consen 275 KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHA-----------AGSEPVRLELSPSG 343 (420)
T ss_pred ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhh-----------cCCCceEEEeCCCC
Confidence 78999999999999999999998 59999999753 11222222110000 00001379999999
Q ss_pred CeEEEc
Q 015290 397 LHFATG 402 (409)
Q Consensus 397 ~~l~s~ 402 (409)
+.||..
T Consensus 344 ~~lA~s 349 (420)
T KOG2096|consen 344 DSLAVS 349 (420)
T ss_pred cEEEee
Confidence 988754
No 149
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.5e-19 Score=145.08 Aligned_cols=268 Identities=13% Similarity=0.192 Sum_probs=176.7
Q ss_pred cceeeehhccCCCCCccccCCCcEEEEEECC--CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCC
Q 015290 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP 89 (409)
Q Consensus 12 ~~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (409)
-.|.+.-..+. |.+.|..|.|-+ -|+.+|+++.|++++||.-+..... ....
T Consensus 47 ~~W~~Ts~Wra--------h~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~------------------~~~~ 100 (361)
T KOG2445|consen 47 GTWSCTSSWRA--------HDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEE------------------AHGR 100 (361)
T ss_pred CceEEeeeEEe--------cCCcEEEEEecCccccceEEEEecCCceeeeeecccccc------------------cccc
Confidence 34666555444 899999999976 6899999999999999986422210 0011
Q ss_pred ceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCccccccccccc
Q 015290 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (409)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (409)
++...+++.... ..|++|.|.|..-|-.|++++.||++|||+.-+--..
T Consensus 101 ~Wv~~ttl~Dsr------------ssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL------------------- 149 (361)
T KOG2445|consen 101 RWVRRTTLVDSR------------SSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL------------------- 149 (361)
T ss_pred eeEEEEEeecCC------------cceeEEEecchhcceEEEEeccCcEEEEEecCCcccc-------------------
Confidence 344455566555 7999999998888999999999999999987543211
Q ss_pred ccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC---CCeEEEecC------Ce
Q 015290 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSADD------LR 240 (409)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~~~~d------~~ 240 (409)
+-|.+.... +.+......+..+..|+.|+|. .++|+.|.| +.
T Consensus 150 ---------------------------s~W~Lq~Ei--~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~ 200 (361)
T KOG2445|consen 150 ---------------------------SQWTLQHEI--QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNK 200 (361)
T ss_pred ---------------------------ccchhhhhh--hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccc
Confidence 112221100 0000011345566789999875 467888733 38
Q ss_pred EEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCC---CEEEEEeCCCeEEEEeCCCcccccccccccccc---c
Q 015290 241 INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC---NLLAYSSSRGFVRLVDMRQSALCDHSARILRDA---A 314 (409)
Q Consensus 241 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~---~ 314 (409)
++||.....+.....+ .++.+|..+|++++|.|+-. .+||+++.|| |+||.++........-...... .
T Consensus 201 ~~Iye~~e~~rKw~kv----a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~ 275 (361)
T KOG2445|consen 201 VKIYEYNENGRKWLKV----AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTD 275 (361)
T ss_pred eEEEEecCCcceeeee----hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccc
Confidence 8999887555232221 34779999999999999743 4899999999 9999987532110000000000 0
Q ss_pred cccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccC--CCcceEEEecccC
Q 015290 315 ESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM--DSTPVATFKIHEH 370 (409)
Q Consensus 315 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~--~~~~~~~~~~~~~ 370 (409)
..-.....+.+|.+.|+.+.|+-.|..|++.+ ||+||+|.... ..++...++....
T Consensus 276 l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~ 334 (361)
T KOG2445|consen 276 LPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGS 334 (361)
T ss_pred cceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCC
Confidence 00112334788999999999999999999776 59999998653 1345666655444
No 150
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.6e-20 Score=157.31 Aligned_cols=236 Identities=13% Similarity=0.144 Sum_probs=167.3
Q ss_pred hhccccceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhccccccc
Q 015290 7 EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST 86 (409)
Q Consensus 7 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (409)
+..+.+.|.++- + .-......|...|+|+.|+.||.+|++|+.||.|.+|.+.+.-.. .
T Consensus 101 i~g~lYlWelss--G-~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a------------------~ 159 (476)
T KOG0646|consen 101 ISGNLYLWELSS--G-ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA------------------D 159 (476)
T ss_pred ccCcEEEEEecc--c-cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc------------------c
Confidence 455667788754 1 111122349999999999999999999999999999997643210 0
Q ss_pred CCCceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccc
Q 015290 87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT 166 (409)
Q Consensus 87 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 166 (409)
..-..+++..|.+|. -+|+++..-+.+...+++|+|.|+++++||+..+.+....
T Consensus 160 ~~~~~~p~~~f~~Ht------------lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti------------- 214 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHT------------LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI------------- 214 (476)
T ss_pred cCCCccceeeeccCc------------ceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE-------------
Confidence 000334678889999 7999999854434568999999999999999988665442
Q ss_pred cccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEE
Q 015290 167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN 245 (409)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd 245 (409)
.....+.+++++|.++.++.| .+|.|.+.+
T Consensus 215 -------------------------------------------------~fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 215 -------------------------------------------------TFPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred -------------------------------------------------ecCCcceeEEEcccccEEEecCCcceEEeee
Confidence 234568899999999999999 999999888
Q ss_pred ccCCC-cee----e---eeecCCCcCcCccC--ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccccc-ccc
Q 015290 246 LEISD-QCF----N---IVDMKPSNMDDLTE--VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR-DAA 314 (409)
Q Consensus 246 ~~~~~-~~~----~---~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~ 314 (409)
+.... +.. + .-......+.+|.+ .|++++++-|| .+|++|+.||.++|||+.+.+. ++.+. .
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q~----iRtl~~~-- 318 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSKQC----IRTLQTS-- 318 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchHHH----HHHHhhh--
Confidence 76322 000 0 00011123677877 99999999999 9999999999999999988653 34333 2
Q ss_pred cccCCcccccccccceeeeEeccCCCEEEEeec--CeEEEEEcc
Q 015290 315 ESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIR 356 (409)
Q Consensus 315 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~--~~v~iwd~~ 356 (409)
.++|+.+.+.|-.+-...+.+ ..+-.|++.
T Consensus 319 ------------kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 319 ------------KGPVTNLQINPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred ------------ccccceeEeeccccceecccccCccCCchHhh
Confidence 457888888665433333322 555556553
No 151
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.6e-19 Score=164.55 Aligned_cols=239 Identities=13% Similarity=0.140 Sum_probs=170.5
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeee-eeccCCCcccccccccccccCceeccCCCCCceeecccccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK-IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (409)
..-+.|+| .++|+.|++|+.|+.|++|+........ ... ..+..+.+...... .+..++ .
T Consensus 14 ~G~t~i~~--d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~--------------~~g~~v~~ia~~s~-~f~~~s--~ 74 (933)
T KOG1274|consen 14 GGLTLICY--DPDGEFICTCGSDGDIRKWKTNSDEEEPETID--------------ISGELVSSIACYSN-HFLTGS--E 74 (933)
T ss_pred CceEEEEE--cCCCCEEEEecCCCceEEeecCCcccCCchhh--------------ccCceeEEEeeccc-ceEEee--c
Confidence 77889999 7999999999999999999876552111 100 01222222222222 233333 2
Q ss_pred cceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceE
Q 015290 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (409)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (409)
+++|..+.+........+. ...-++++++|+.+|++++.| .|-.|++-++. ....... +.+|.++|.
T Consensus 75 ~~tv~~y~fps~~~~~iL~----Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~-D~s~~~~-------lrgh~apVl 142 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEEDTILA----RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD-DSSQEKV-------LRGHDAPVL 142 (933)
T ss_pred cceEEEeeCCCCCccceee----eeeccceEEEEecCCcEEEeecCceeEEEEecc-ccchhee-------ecccCCcee
Confidence 7889999887755444443 345678999999999999999 99999999998 4444444 689999999
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccc-ccceeeeEeccCC-CEEEEeecCe
Q 015290 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDG-QHLLSRDYMN 349 (409)
Q Consensus 272 ~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~g-~~l~sg~~~~ 349 (409)
++.|+|.+ ++||+.+.||.|++||+.++.+. +.+.. - .+ ..... ...+..++|+|+| ++++.+.++.
T Consensus 143 ~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~----~tl~~-v-~k----~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~ 211 (933)
T KOG1274|consen 143 QLSYDPKG-NFLAVSSCDGKVQIWDLQDGILS----KTLTG-V-DK----DNEFILSRICTRLAWHPKGGTLAVPPVDNT 211 (933)
T ss_pred eeeEcCCC-CEEEEEecCceEEEEEcccchhh----hhccc-C-Cc----cccccccceeeeeeecCCCCeEEeeccCCe
Confidence 99999999 99999999999999999987652 22222 0 00 00000 3467889999995 5666677899
Q ss_pred EEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 350 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
|++|+... ......+......- . +..+.|+|+|+|||+++.||.|
T Consensus 212 Vkvy~r~~-we~~f~Lr~~~~ss-----------~--~~~~~wsPnG~YiAAs~~~g~I 256 (933)
T KOG1274|consen 212 VKVYSRKG-WELQFKLRDKLSSS-----------K--FSDLQWSPNGKYIAASTLDGQI 256 (933)
T ss_pred EEEEccCC-ceeheeeccccccc-----------c--eEEEEEcCCCcEEeeeccCCcE
Confidence 99999874 66666665433221 1 1589999999999999999976
No 152
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.1e-19 Score=167.69 Aligned_cols=302 Identities=12% Similarity=0.152 Sum_probs=199.8
Q ss_pred cEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceec
Q 015290 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (409)
Q Consensus 34 ~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (409)
.-..+.|+|-...++++...-.|+|||.+.++. +..|..+... .
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~---------------------------l~~F~n~~~~---------~ 1109 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRL---------------------------LNGFDNGAFP---------D 1109 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCce---------------------------eccccCCCCC---------C
Confidence 456788999888899888777999999987763 3334333311 1
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCc---eeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ---KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
..|+.+.+....|..++++|+.||.||||+-... +...+..+.. +........... ....|......+..++.
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~---Ls~~~~~~r~~~-~v~dWqQ~~G~Ll~tGd 1185 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSS---LSDQLPGARGTG-LVVDWQQQSGHLLVTGD 1185 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeecc---ccccCccCCCCC-eeeehhhhCCeEEecCC
Confidence 5799999986667788999999999999975432 1111111110 000011111111 22233333333333321
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCC-CCCeEEEe-cCCeEEEEEccCCCc--eeeeeecCCCcCcCc
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDDL 266 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~lwd~~~~~~--~~~~~~~~~~~~~~~ 266 (409)
-..|++||.+.. ++......+....|+++.-+- .|+.+++| .||.|++||.+.... .+.. ...|
T Consensus 1186 --~r~IRIWDa~~E---~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~-------~R~h 1253 (1387)
T KOG1517|consen 1186 --VRSIRIWDAHKE---QVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV-------YREH 1253 (1387)
T ss_pred --eeEEEEEecccc---eeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee-------eccc
Confidence 458999999763 333333245556677766543 47899999 999999999985433 3333 5667
Q ss_pred cCc--eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE
Q 015290 267 TEV--ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (409)
Q Consensus 267 ~~~--v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s 344 (409)
... |..+.+.+.|-..|++|+.+|.|++||+|... ......+... . ...+.++++..+++...+|+
T Consensus 1254 ~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-~e~~~~iv~~-~----------~yGs~lTal~VH~hapiiAs 1321 (1387)
T KOG1517|consen 1254 NDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-KETFLTIVAH-W----------EYGSALTALTVHEHAPIIAS 1321 (1387)
T ss_pred CCcccceeEEeecCCCcceeeeccCCeEEEEecccCc-ccccceeeec-c----------ccCccceeeeeccCCCeeee
Confidence 776 99999999884469999999999999999842 1111111110 0 00235899999999999999
Q ss_pred eecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCCC
Q 015290 345 RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDNG 409 (409)
Q Consensus 345 g~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i~ 409 (409)
|+.+.|+||++. |+.+..++.+.... ...+..+.+++|+|-.-.||+|+.|.+|+
T Consensus 1322 Gs~q~ikIy~~~--G~~l~~~k~n~~F~--------~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1322 GSAQLIKIYSLS--GEQLNIIKYNPGFM--------GQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred cCcceEEEEecC--hhhhcccccCcccc--------cCcCCCcceeeecchhHhhhhccCCceEE
Confidence 988999999986 78777777554332 22344457999999999999999998763
No 153
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1e-19 Score=146.47 Aligned_cols=225 Identities=15% Similarity=0.234 Sum_probs=164.9
Q ss_pred EEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceEEEEEEecCC
Q 015290 47 LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN 126 (409)
Q Consensus 47 la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~ 126 (409)
|++|++...|.=+++.-.... ......|...++-.+..|. ++|++++. +
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~---------------~~~s~~~~l~~lF~~~aH~------------~sitavAV----s 52 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKG---------------CTDSVKPTLKPLFAFSAHA------------GSITALAV----S 52 (362)
T ss_pred EEEeeeeeEEEEEEeccCccc---------------cccccceeeeccccccccc------------cceeEEEe----c
Confidence 567777776666655422100 0011233444566678888 99999998 6
Q ss_pred CCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCCccc
Q 015290 127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH 206 (409)
Q Consensus 127 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 206 (409)
+.++++|+.|-+|+|||+........
T Consensus 53 ~~~~aSGssDetI~IYDm~k~~qlg~------------------------------------------------------ 78 (362)
T KOG0294|consen 53 GPYVASGSSDETIHIYDMRKRKQLGI------------------------------------------------------ 78 (362)
T ss_pred ceeEeccCCCCcEEEEeccchhhhcc------------------------------------------------------
Confidence 88999999999999999986543221
Q ss_pred ceeeeeeccccccceeEEEeCCCCC--eEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEE
Q 015290 207 ARCQKVYPHAHDFNINSISNNSDCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 283 (409)
Q Consensus 207 ~~~~~~~~~~~~~~v~~l~~~~~~~--~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 283 (409)
+..|.+.|+++.|.+... .|++| .||.|.+|+.. .-.++.. +++|.+.|+.++.+|.+ ++.
T Consensus 79 -------ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-~W~~~~s-------lK~H~~~Vt~lsiHPS~-KLA 142 (362)
T KOG0294|consen 79 -------LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-SWELLKS-------LKAHKGQVTDLSIHPSG-KLA 142 (362)
T ss_pred -------eeccccceEEEEecCCcchhheeeecCCCcEEEEEcC-CeEEeee-------ecccccccceeEecCCC-ceE
Confidence 146899999999988754 89999 99999999998 4456655 78999999999999999 999
Q ss_pred EEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceE
Q 015290 284 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA 363 (409)
Q Consensus 284 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~ 363 (409)
++.+.|+.++.||+-.++.. ...+. ....+.+.|+|.|.+++.+....|-+|.+.. .....
T Consensus 143 LsVg~D~~lr~WNLV~Gr~a----~v~~L--------------~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~-A~v~~ 203 (362)
T KOG0294|consen 143 LSVGGDQVLRTWNLVRGRVA----FVLNL--------------KNKATLVSWSPQGDHFVVSGRNKIDIYQLDN-ASVFR 203 (362)
T ss_pred EEEcCCceeeeehhhcCccc----eeecc--------------CCcceeeEEcCCCCEEEEEeccEEEEEeccc-HhHhh
Confidence 99999999999999877631 22222 1234459999999998888889999999975 44444
Q ss_pred EEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
.+...... .++.|- ++..|++|++|+.|
T Consensus 204 ~i~~~~r~----------------l~~~~l-~~~~L~vG~d~~~i 231 (362)
T KOG0294|consen 204 EIENPKRI----------------LCATFL-DGSELLVGGDNEWI 231 (362)
T ss_pred hhhccccc----------------eeeeec-CCceEEEecCCceE
Confidence 44333211 355554 67788899888765
No 154
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=9.6e-20 Score=153.02 Aligned_cols=250 Identities=17% Similarity=0.210 Sum_probs=168.0
Q ss_pred EEEEECC-------CCCEEEEEecCCeEEEEeccCCcCCC---CccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290 36 SAIEFDK-------TGDYLAVGDRGGRVILFETVGGKNTP---NQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (409)
Q Consensus 36 ~~v~~~~-------~~~~la~~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (409)
.|++|.. .|+|+|.|..|..|.|||+.-..... .+|......+.. ..+--..-.+|+
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k---------~~k~~~~~~gHT---- 243 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKK---------KGKRSNSASGHT---- 243 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhh---------hcccccccccch----
Confidence 4666643 36899999999999999987433210 001000000000 000001124566
Q ss_pred ccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (409)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (409)
..|.+++|+. --.+.|++||.|.+|++||+.++++....
T Consensus 244 --------davl~Ls~n~-~~~nVLaSgsaD~TV~lWD~~~g~p~~s~-------------------------------- 282 (463)
T KOG0270|consen 244 --------DAVLALSWNR-NFRNVLASGSADKTVKLWDVDTGKPKSSI-------------------------------- 282 (463)
T ss_pred --------HHHHHHHhcc-ccceeEEecCCCceEEEEEcCCCCcceeh--------------------------------
Confidence 8899999952 44568999999999999999998765542
Q ss_pred ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (409)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (409)
..|.+.|.+++|+|. ...|++| .|+++.+.|.+.....-..
T Consensus 283 -----------------------------~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~-------- 325 (463)
T KOG0270|consen 283 -----------------------------THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE-------- 325 (463)
T ss_pred -----------------------------hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce--------
Confidence 468899999999996 6788899 9999999999932222111
Q ss_pred cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC-EE
Q 015290 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HL 342 (409)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l 342 (409)
-.-.+.|..++|.|..+..++++..||+|+-+|+|+... .+|.. ..|.++|.++++++.-. +|
T Consensus 326 wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~-----~vwt~-----------~AHd~~ISgl~~n~~~p~~l 389 (463)
T KOG0270|consen 326 WKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK-----PVWTL-----------KAHDDEISGLSVNIQTPGLL 389 (463)
T ss_pred EEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCC-----ceeEE-----------EeccCCcceEEecCCCCcce
Confidence 113467899999999888999999999999999998542 23333 55688999999998754 56
Q ss_pred EEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCC-eEEEcccCC
Q 015290 343 LSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYRR 406 (409)
Q Consensus 343 ~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~s~s~dg 406 (409)
++++ ++.|++|++.- ..+ .....|.-....+ .|+++.|+-. .||.|+..+
T Consensus 390 ~t~s~d~~Vklw~~~~-~~~-~~v~~~~~~~~rl------------~c~~~~~~~a~~la~GG~k~ 441 (463)
T KOG0270|consen 390 STASTDKVVKLWKFDV-DSP-KSVKEHSFKLGRL------------HCFALDPDVAFTLAFGGEKA 441 (463)
T ss_pred eeccccceEEEEeecC-CCC-cccccccccccce------------eecccCCCcceEEEecCccc
Confidence 6665 59999999973 222 2222333222211 3777777754 456666554
No 155
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=5.9e-19 Score=155.75 Aligned_cols=240 Identities=13% Similarity=0.138 Sum_probs=173.9
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCcee-eeeeccCCCcccccccccccccCceeccCCCCCceeecccccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (409)
..|.+++| +.+++.||.+-.||.|.+|++..+=. ...........+..+.+ .+. ..+.+.+.
T Consensus 26 s~I~slA~--s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W------------~e~-~RLFS~g~-- 88 (691)
T KOG2048|consen 26 SEIVSLAY--SHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAW------------AEG-GRLFSSGL-- 88 (691)
T ss_pred cceEEEEE--eccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEE------------ccC-CeEEeecC--
Confidence 68999999 78888999999999999999987532 23333332332333322 222 22222222
Q ss_pred cceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceE
Q 015290 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (409)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (409)
+|.|.-||+.+ .+++..+ ....+.|.+++.+|.+..++.| .||.+..++.. .+...... .+....+.+.
T Consensus 89 sg~i~EwDl~~---lk~~~~~-d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~-p~~I~~~r-----~l~rq~sRvL 158 (691)
T KOG2048|consen 89 SGSITEWDLHT---LKQKYNI-DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG-PDKITYKR-----SLMRQKSRVL 158 (691)
T ss_pred CceEEEEeccc---CceeEEe-cCCCcceeEEEeCCccceEEeecCCceEEEEecC-CceEEEEe-----ecccccceEE
Confidence 88999999976 4444444 5677899999999999999999 99977777776 44433221 1444568999
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccc-ccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-Ce
Q 015290 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 349 (409)
Q Consensus 272 ~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~ 349 (409)
+++|+|++ ..+++|+.||.|++||...+..... ..+.... . ..-..-|+++.|-.++ .|++|+. |+
T Consensus 159 slsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l-~---------k~~~~iVWSv~~Lrd~-tI~sgDS~G~ 226 (691)
T KOG2048|consen 159 SLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL-S---------KREPTIVWSVLFLRDS-TIASGDSAGT 226 (691)
T ss_pred EEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeeccccc-c---------cCCceEEEEEEEeecC-cEEEecCCce
Confidence 99999999 8899999999999999988753210 0001111 0 0013468888888665 7788865 99
Q ss_pred EEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 350 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
|.+||... +.+++.+..|..-+ .+++..+++.++++++.|+.|
T Consensus 227 V~FWd~~~-gTLiqS~~~h~adV---------------l~Lav~~~~d~vfsaGvd~~i 269 (691)
T KOG2048|consen 227 VTFWDSIF-GTLIQSHSCHDADV---------------LALAVADNEDRVFSAGVDPKI 269 (691)
T ss_pred EEEEcccC-cchhhhhhhhhcce---------------eEEEEcCCCCeEEEccCCCce
Confidence 99999986 89999999888865 699999999999999999976
No 156
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.85 E-value=1.1e-19 Score=163.98 Aligned_cols=195 Identities=17% Similarity=0.266 Sum_probs=160.8
Q ss_pred CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeee---cCCCccccccc
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF---QSHEPEFDYLK 108 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~~~~~~ 108 (409)
...+++++.++.|++.+.|...|.|-+|+++.+.. ...+ ..|.
T Consensus 448 ~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~---------------------------r~sf~~~~ah~------- 493 (910)
T KOG1539|consen 448 DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH---------------------------RKSFGDSPAHK------- 493 (910)
T ss_pred CcceEEEEEeccCceEEEeccCCeEEEEEcccCee---------------------------ecccccCcccc-------
Confidence 36899999999999999999999999999998763 2233 4566
Q ss_pred cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (409)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (409)
++|++++. ..-++.+++++.+|.+++||+..+......
T Consensus 494 -----~~V~gla~--D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l----------------------------------- 531 (910)
T KOG1539|consen 494 -----GEVTGLAV--DGTNRLLVSAGADGILKFWDFKKKVLKKSL----------------------------------- 531 (910)
T ss_pred -----CceeEEEe--cCCCceEEEccCcceEEEEecCCcceeeee-----------------------------------
Confidence 89999999 677788999999999999999887643321
Q ss_pred cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (409)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (409)
.-...+.++..+.....++.+ .|-.|.++|.. +....+. +.+|.
T Consensus 532 ---------------------------~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~-t~kvvR~-------f~gh~ 576 (910)
T KOG1539|consen 532 ---------------------------RLGSSITGIVYHRVSDLLAIALDDFSIRVVDVV-TRKVVRE-------FWGHG 576 (910)
T ss_pred ---------------------------ccCCCcceeeeeehhhhhhhhcCceeEEEEEch-hhhhhHH-------hhccc
Confidence 123456677778777888888 99999999998 5665555 79999
Q ss_pred CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-
Q 015290 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (409)
Q Consensus 268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~- 346 (409)
+.|++++||||| ++|++++.|++|++||+.++.+. -.+.. ..+..++.|+|+|.+||+..
T Consensus 577 nritd~~FS~Dg-rWlisasmD~tIr~wDlpt~~lI----D~~~v--------------d~~~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 577 NRITDMTFSPDG-RWLISASMDSTIRTWDLPTGTLI----DGLLV--------------DSPCTSLSFSPNGDFLATVHV 637 (910)
T ss_pred cceeeeEeCCCC-cEEEEeecCCcEEEEeccCccee----eeEec--------------CCcceeeEECCCCCEEEEEEe
Confidence 999999999999 99999999999999999998653 22322 45789999999999999995
Q ss_pred c-CeEEEEEcc
Q 015290 347 Y-MNLKLWDIR 356 (409)
Q Consensus 347 ~-~~v~iwd~~ 356 (409)
| ..|++|-=.
T Consensus 638 d~~gIylWsNk 648 (910)
T KOG1539|consen 638 DQNGIYLWSNK 648 (910)
T ss_pred cCceEEEEEch
Confidence 6 899999743
No 157
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.84 E-value=8.9e-19 Score=155.62 Aligned_cols=299 Identities=16% Similarity=0.165 Sum_probs=200.6
Q ss_pred EEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccc
Q 015290 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (409)
Q Consensus 36 ~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (409)
-++.|++....|.+.-.|..+.|||+.+-.+. . -...+.-|. ..
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kv-----------------------g-k~~s~lyHS------------~c 371 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKV-----------------------G-KCSSMLYHS------------AC 371 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccc-----------------------c-ceeeeeecc------------ce
Confidence 37889999999999999999999999875531 0 122344566 55
Q ss_pred eEEEEEEe----c------CCCCEEEEEeCCCeEEEEEcCCceeeeee-----ccCCCc--------ccc----------
Q 015290 116 INRVRWCA----A------PNGSMFILSTNDKTIKLWKVRDQKVKKIK-----EMDHFP--------FVS---------- 162 (409)
Q Consensus 116 v~~l~~~~----s------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----~~~~~~--------~~~---------- 162 (409)
|++|.-.| + |.+ .|++|+.|++|++|++....-..++ ..+... .+.
T Consensus 372 iW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdk 450 (1080)
T KOG1408|consen 372 IWDVENLPCNVHSPTAACLPRG-CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDK 450 (1080)
T ss_pred eeeeccccccccCcccccCCcc-ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccc
Confidence 66665543 1 222 5999999999999999753211110 000000 000
Q ss_pred -cccccccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC---CCeEEEe-c
Q 015290 163 -SENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-D 237 (409)
Q Consensus 163 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~~~-~ 237 (409)
.++.......+.+..-+++++.+++|.. .|.++++++..... ..+..+|...|.|+.++.. .++|+++ .
T Consensus 451 a~~s~~d~r~G~R~~~vSp~gqhLAsGDr--~GnlrVy~Lq~l~~----~~~~eAHesEilcLeyS~p~~~~kLLASasr 524 (1080)
T KOG1408|consen 451 ALVSTCDSRFGFRALAVSPDGQHLASGDR--GGNLRVYDLQELEY----TCFMEAHESEILCLEYSFPVLTNKLLASASR 524 (1080)
T ss_pred cchhhcCcccceEEEEECCCcceecccCc--cCceEEEEehhhhh----hhheecccceeEEEeecCchhhhHhhhhccC
Confidence 0000111222334445778888888876 78999999975221 1223789999999999753 5778888 9
Q ss_pred CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCC-CEEEEEeCCCeEEEEeCCCccccccccccccccccc
Q 015290 238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES 316 (409)
Q Consensus 238 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 316 (409)
|..|.+||....-..+.+ +.+|...|+++.|.-.|- ..+++++.|..|. |+....... ...+..|+..
T Consensus 525 dRlIHV~Dv~rny~l~qt-------ld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~---g~~f~r~t~t 593 (1080)
T KOG1408|consen 525 DRLIHVYDVKRNYDLVQT-------LDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASS---GRLFPRHTQT 593 (1080)
T ss_pred CceEEEEecccccchhhh-------hcccccceeEEEEeecCCceEEEeccCchhhh-eehhccccC---ceeccccccc
Confidence 999999999844444554 789999999999986652 4678888888654 443321100 1222221110
Q ss_pred cCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCC
Q 015290 317 HGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD 395 (409)
Q Consensus 317 ~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 395 (409)
--...+..++..|..+++++++ |..|+|||+.. ++..+.|++..+.-..+ ..+...|.
T Consensus 594 --------~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~l------------IKv~lDPS 652 (1080)
T KOG1408|consen 594 --------LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDL------------IKVILDPS 652 (1080)
T ss_pred --------cccceEEEeeeCCCcceEEEEecccceEEEeccc-cceeeeecccccCCCce------------EEEEECCC
Confidence 0025788999999999999987 59999999986 89999998755432111 37999999
Q ss_pred CCeEEEcccCCCCC
Q 015290 396 GLHFATGSYRRDNG 409 (409)
Q Consensus 396 g~~l~s~s~dg~i~ 409 (409)
|.|||+...|++++
T Consensus 653 giY~atScsdktl~ 666 (1080)
T KOG1408|consen 653 GIYLATSCSDKTLC 666 (1080)
T ss_pred ccEEEEeecCCceE
Confidence 99999999998863
No 158
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=5e-19 Score=146.68 Aligned_cols=211 Identities=13% Similarity=0.131 Sum_probs=160.4
Q ss_pred cccCCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290 28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (409)
..+|+.+|..++|+| +...||+||.|.+|.||++..+... .+-.+++..|.||+
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~--------------------~~ltepvv~L~gH~----- 131 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT--------------------RDLTEPVVELYGHQ----- 131 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccc--------------------cCcccceEEEeecc-----
Confidence 345999999999999 6678999999999999999866541 22345778899999
Q ss_pred cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (409)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (409)
..|--++||| ...+.|++++.|++|.+|++.+++....
T Consensus 132 -------rrVg~V~wHP-tA~NVLlsag~Dn~v~iWnv~tgeali~---------------------------------- 169 (472)
T KOG0303|consen 132 -------RRVGLVQWHP-TAPNVLLSAGSDNTVSIWNVGTGEALIT---------------------------------- 169 (472)
T ss_pred -------eeEEEEeecc-cchhhHhhccCCceEEEEeccCCceeee----------------------------------
Confidence 8999999987 4445899999999999999999865432
Q ss_pred cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (409)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (409)
..|.+.|.++.|+.+|.+|+++ .|..|+|||.+ .+..+.. -.+
T Consensus 170 ----------------------------l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr-~~~~v~e-------~~~ 213 (472)
T KOG0303|consen 170 ----------------------------LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPR-RGTVVSE-------GVA 213 (472)
T ss_pred ----------------------------cCCCCeEEEEEeccCCceeeeecccceeEEEcCC-CCcEeee-------ccc
Confidence 2489999999999999999999 99999999999 6666654 344
Q ss_pred ccC-ceEEEEEeCCCCCEEEEEe---CCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCE
Q 015290 266 LTE-VITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (409)
Q Consensus 266 ~~~-~v~~~~~~p~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 341 (409)
|.+ .-..+.|-.+| .++.+|- .+..+.+||..+-+... -...+.. ...|.---|.+|...
T Consensus 214 heG~k~~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~-~~~elDt--------------SnGvl~PFyD~dt~i 277 (472)
T KOG0303|consen 214 HEGAKPARAIFLASG-KIFTTGFSRMSERQIALWDPNNLEEPI-ALQELDT--------------SNGVLLPFYDPDTSI 277 (472)
T ss_pred ccCCCcceeEEeccC-ceeeeccccccccceeccCcccccCcc-eeEEecc--------------CCceEEeeecCCCCE
Confidence 543 34556777888 7555542 47789999987643220 0112222 345666778888887
Q ss_pred EEEe--ecCeEEEEEccC
Q 015290 342 LLSR--DYMNLKLWDIRM 357 (409)
Q Consensus 342 l~sg--~~~~v~iwd~~~ 357 (409)
+..+ +|+.||-|.+..
T Consensus 278 vYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 278 VYLCGKGDSSIRYFEITN 295 (472)
T ss_pred EEEEecCCcceEEEEecC
Confidence 7654 479999999975
No 159
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.1e-19 Score=145.22 Aligned_cols=202 Identities=19% Similarity=0.313 Sum_probs=153.0
Q ss_pred CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceEEEEEEec
Q 015290 45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA 124 (409)
Q Consensus 45 ~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s 124 (409)
..+|++...|.|++||..++. .+..++++. ..++.++|.-.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~---------------------------~l~~fk~~~------------~~~N~vrf~~~ 81 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ---------------------------LLEEFKGPP------------ATTNGVRFISC 81 (376)
T ss_pred eeEEEEecCCeEEEEeccchh---------------------------hhheecCCC------------CcccceEEecC
Confidence 578899999999999999876 467889998 78899999621
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCCc
Q 015290 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 204 (409)
Q Consensus 125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 204 (409)
...+.+.+|+.||+|++||++.........
T Consensus 82 ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~-------------------------------------------------- 111 (376)
T KOG1188|consen 82 DSPHGVISCSSDGTVRLWDIRSQAESARIS-------------------------------------------------- 111 (376)
T ss_pred CCCCeeEEeccCCeEEEEEeecchhhhhee--------------------------------------------------
Confidence 256789999999999999998764433221
Q ss_pred ccceeeeeeccccc-cceeEEEeCCCCCeEEEe-----cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCC
Q 015290 205 VHARCQKVYPHAHD-FNINSISNNSDCETFVSA-----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 278 (409)
Q Consensus 205 ~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~~~-----~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 278 (409)
+ ..+. .+..+++.+-.++.+++| .+-.+.+||++...+.+..+ ...|.+.|+++.|+|.
T Consensus 112 --------~-~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~------~eSH~DDVT~lrFHP~ 176 (376)
T KOG1188|consen 112 --------W-TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL------NESHNDDVTQLRFHPS 176 (376)
T ss_pred --------c-cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh------hhhccCcceeEEecCC
Confidence 1 2233 466778877778888876 36679999999666656554 6789999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC-CEEEEee-cCeEEEEEcc
Q 015290 279 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIR 356 (409)
Q Consensus 279 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~sg~-~~~v~iwd~~ 356 (409)
.+++|++||.||.|.+||+...........+++. ...|.++.|..++ +.|.+-+ ..+..+|++.
T Consensus 177 ~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~--------------~sSI~~igw~~~~ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 177 DPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINH--------------GSSIHLIGWLSKKYKRIMCLTHMETFAIYELE 242 (376)
T ss_pred CCCeEEeecccceEEeeecCCCcchhhHHHhhcc--------------cceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence 9999999999999999999875433322333333 5679999999988 3455555 4999999997
Q ss_pred CCCcceEEE
Q 015290 357 MDSTPVATF 365 (409)
Q Consensus 357 ~~~~~~~~~ 365 (409)
. +.+...+
T Consensus 243 ~-~~~~~~~ 250 (376)
T KOG1188|consen 243 D-GSEETWL 250 (376)
T ss_pred C-CChhhcc
Confidence 5 5544333
No 160
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=3.4e-19 Score=156.23 Aligned_cols=254 Identities=20% Similarity=0.296 Sum_probs=169.4
Q ss_pred EEEECC---CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceec
Q 015290 37 AIEFDK---TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (409)
Q Consensus 37 ~v~~~~---~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (409)
+..|++ ....||.+..||.|.++|.....- + ++-+.+..+..|.
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f-------r--------------~ee~~lk~~~aH~------------ 100 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVF-------R--------------LEERQLKKPLAHK------------ 100 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhc-------c--------------hhhhhhccccccc------------
Confidence 467776 346889999999999999875431 0 0111234567787
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (409)
+.|.++.|. |....|++++.|.++++||+.+..+....
T Consensus 101 nAifDl~wa--pge~~lVsasGDsT~r~Wdvk~s~l~G~~---------------------------------------- 138 (720)
T KOG0321|consen 101 NAIFDLKWA--PGESLLVSASGDSTIRPWDVKTSRLVGGR---------------------------------------- 138 (720)
T ss_pred ceeEeeccC--CCceeEEEccCCceeeeeeeccceeecce----------------------------------------
Confidence 899999995 66668999999999999999987654320
Q ss_pred ceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCc-eeeeee-------------
Q 015290 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQ-CFNIVD------------- 257 (409)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~-~~~~~~------------- 257 (409)
. +.+|.+.|.+++|.|.. ..|++| .||.|.|||++..+. .+..++
T Consensus 139 ------------------~-~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 139 ------------------L-NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred ------------------e-ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 1 26899999999999976 456678 999999999985431 000000
Q ss_pred c-----CCCcCcCccCceEE---EEEeCCCCCEEEEEeC-CCeEEEEeCCCccccccccccccccccccCCccccccc--
Q 015290 258 M-----KPSNMDDLTEVITS---AEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI-- 326 (409)
Q Consensus 258 ~-----~~~~~~~~~~~v~~---~~~~p~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 326 (409)
. +......+...|.+ +.+..|. ..||+++. |+.|+|||++.... .++. .|.....+..|
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~------~~r~---ep~~~~~~~t~sk 269 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYT------AYRQ---EPRGSDKYPTHSK 269 (720)
T ss_pred CchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeeccccc------cccc---CCCcccCccCccc
Confidence 0 00122334444555 5556666 78888887 99999999998642 1111 11111111122
Q ss_pred -ccceeeeEeccCCCEEEE-eecCeEEEEEccCC-CcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290 327 -IASISDIKFANDGQHLLS-RDYMNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (409)
Q Consensus 327 -~~~i~~~~~s~~g~~l~s-g~~~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s 403 (409)
...+.++.....|.+|.+ +.|+.|++||+... ..++..+.++.... ++ ..-..+||+.+|++|+
T Consensus 270 rs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~s-----------f~--vks~lSpd~~~l~SgS 336 (720)
T KOG0321|consen 270 RSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSS-----------FY--VKSELSPDDCSLLSGS 336 (720)
T ss_pred ceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccce-----------ee--eeeecCCCCceEeccC
Confidence 335777888877877664 56899999999752 24555665554431 11 2456789999999999
Q ss_pred cCCC
Q 015290 404 YRRD 407 (409)
Q Consensus 404 ~dg~ 407 (409)
.|..
T Consensus 337 sd~~ 340 (720)
T KOG0321|consen 337 SDEQ 340 (720)
T ss_pred CCcc
Confidence 9975
No 161
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.83 E-value=4.8e-19 Score=140.98 Aligned_cols=224 Identities=17% Similarity=0.266 Sum_probs=160.8
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
+-+.|.|+.|.|++..+|+-. |..|.+|+++..... +..+.... +.
T Consensus 122 avg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~--------------------------vaev~ss~-------s~ 167 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKI--------------------------VAEVLSSE-------SA 167 (370)
T ss_pred HhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcch--------------------------heeecccc-------cc
Confidence 456999999999999998776 789999999876531 11111110 01
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
+++...++-+|.|..+|+.+++.+ |++++.||+++.+....+.
T Consensus 168 e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~------------------------------------ 210 (370)
T KOG1007|consen 168 EMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIE------------------------------------ 210 (370)
T ss_pred cccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchh------------------------------------
Confidence 111577888997767888777655 7899999999765432221
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCe-EEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (409)
.+|...|..+.|+|+.+. |+++ +||.|++||.+....++.. +.+|..
T Consensus 211 ------------------------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e-------l~~HsH 259 (370)
T KOG1007|consen 211 ------------------------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE-------LPGHSH 259 (370)
T ss_pred ------------------------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccc-------cCCCce
Confidence 678889999999998654 5667 9999999999977777765 799999
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccc-----cccccc------c-cccCCcccccccccceeeeEec
Q 015290 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA-----RILRDA------A-ESHGSKSFFTEIIASISDIKFA 336 (409)
Q Consensus 269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----~~~~~~------~-~~~~~~~~~~~~~~~i~~~~~s 336 (409)
+|+++.|+|...+++++|+.|..|.+|...+-....+.. .....+ . .......++..|...|.+++||
T Consensus 260 WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS 339 (370)
T KOG1007|consen 260 WVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS 339 (370)
T ss_pred EEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeec
Confidence 999999999887899999999999999876532110000 000000 0 0001234678899999999999
Q ss_pred cCCCEEEEe-e-cCeEEEEEcc
Q 015290 337 NDGQHLLSR-D-YMNLKLWDIR 356 (409)
Q Consensus 337 ~~g~~l~sg-~-~~~v~iwd~~ 356 (409)
.-..++++. + ||++.|=.+.
T Consensus 340 sadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 340 SADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cCCCeeEEEeccCceEEeecCC
Confidence 877776654 6 5998887764
No 162
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.83 E-value=3.4e-19 Score=143.99 Aligned_cols=258 Identities=16% Similarity=0.180 Sum_probs=171.4
Q ss_pred ceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcc-cccccccccccCceecc-------CCCCCceee
Q 015290 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF-VSSENTLLAEKNFMNEH-------NPPSFAHGY 186 (409)
Q Consensus 115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 186 (409)
-.....| +|||..|++-+.|..+.+|++................ ...+.. .....+.... ..|+..+.+
T Consensus 51 f~kgckW--SPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~a 127 (406)
T KOG2919|consen 51 FLKGCKW--SPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLFA 127 (406)
T ss_pred hhcccee--CCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCCccceee
Confidence 4456789 8999999999999999999985322111100000000 000000 0111111111 123333333
Q ss_pred cccccccceeEEEecCCcccceeeeeeccccccc---eeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcC
Q 015290 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFN---INSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNM 263 (409)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (409)
..+. +.-|++||.-+.......+.+ .|... ..+++|+|||.+|++|....|+++|+..++............-
T Consensus 128 ~ssr--~~PIh~wdaftG~lraSy~~y--dh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k 203 (406)
T KOG2919|consen 128 VSSR--DQPIHLWDAFTGKLRASYRAY--DHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGK 203 (406)
T ss_pred eccc--cCceeeeeccccccccchhhh--hhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccc
Confidence 3333 778999999875544444433 34333 3589999999999999889999999954554433322111112
Q ss_pred cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (409)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 343 (409)
.+..+.+.+++|+|..+..++.|+....+-||.-....++ .++ .+|.+.|+.+.|.++|+.|.
T Consensus 204 ~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl----~ll-------------ggh~gGvThL~~~edGn~lf 266 (406)
T KOG2919|consen 204 FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL----QLL-------------GGHGGGVTHLQWCEDGNKLF 266 (406)
T ss_pred ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce----eee-------------cccCCCeeeEEeccCcCeec
Confidence 2346788999999998679999999999888876665432 222 35678999999999999999
Q ss_pred Eee--cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 344 SRD--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 344 sg~--~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
+|+ +..|-.||++..+.++..+..|..- .+.+| -....|+|++||+|+.||.|
T Consensus 267 sGaRk~dkIl~WDiR~~~~pv~~L~rhv~~--------TNQRI----~FDld~~~~~LasG~tdG~V 321 (406)
T KOG2919|consen 267 SGARKDDKILCWDIRYSRDPVYALERHVGD--------TNQRI----LFDLDPKGEILASGDTDGSV 321 (406)
T ss_pred ccccCCCeEEEEeehhccchhhhhhhhccC--------ccceE----EEecCCCCceeeccCCCccE
Confidence 997 4899999999877888888877662 12233 36667999999999999976
No 163
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.4e-19 Score=156.55 Aligned_cols=262 Identities=14% Similarity=0.156 Sum_probs=181.6
Q ss_pred cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (409)
Q Consensus 30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (409)
.|.+.|.+++|.|....|++|+.||.+++|+++.... +..-..+++.+|++|.
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~-------------------s~~~~~epi~tfraH~-------- 344 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK-------------------SAEKDVEPILTFRAHE-------- 344 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC-------------------ccccceeeeEEEeccc--------
Confidence 3899999999999999999999999999999954221 1112456788999999
Q ss_pred ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (409)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (409)
++|.|+.. .++++.+++|+.||+|+.|++... ....-.+ +
T Consensus 345 ----gPVl~v~v--~~n~~~~ysgg~Dg~I~~w~~p~n-~dp~ds~--------------d------------------- 384 (577)
T KOG0642|consen 345 ----GPVLCVVV--PSNGEHCYSGGIDGTIRCWNLPPN-QDPDDSY--------------D------------------- 384 (577)
T ss_pred ----CceEEEEe--cCCceEEEeeccCceeeeeccCCC-CCccccc--------------C-------------------
Confidence 99999999 799999999999999999987621 1100000 0
Q ss_pred ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (409)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (409)
...+...+.||.+.++.+++|+...+|+++ .||++++|+.. .... .++. .....+
T Consensus 385 -----------------p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~-~~~~-~~f~-----~~~e~g 440 (577)
T KOG0642|consen 385 -----------------PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT-EESP-CTFG-----EPKEHG 440 (577)
T ss_pred -----------------cchhccceeccccceeeeeecccccceeeecCCceEEeeccC-CcCc-cccC-----CccccC
Confidence 011111237999999999999999899999 99999999987 3333 2211 122234
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-
Q 015290 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 347 (409)
Q Consensus 269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~- 347 (409)
...++.+-...+...++...-+.-.++++..... ..++.. ...+... -...+..+.++|.+.+.+++.+
T Consensus 441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~----~~~~~s-~~~~~~~-----~~~~in~vVs~~~~~~~~~~hed 510 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD----LLIFES-SASPGPR-----RYPQINKVVSHPTADITFTAHED 510 (577)
T ss_pred CcceEeeccchhHhhhhhcccccccchhhhhhhh----eeeccc-cCCCccc-----ccCccceEEecCCCCeeEecccC
Confidence 4466666544312222222222223333333221 122222 1111110 0245788899999988888875
Q ss_pred CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
+.|+++|..+ +.++.....|...+ +++++.|+|.+|++++.||.|
T Consensus 511 ~~Ir~~dn~~-~~~l~s~~a~~~sv---------------tslai~~ng~~l~s~s~d~sv 555 (577)
T KOG0642|consen 511 RSIRFFDNKT-GKILHSMVAHKDSV---------------TSLAIDPNGPYLMSGSHDGSV 555 (577)
T ss_pred Cceecccccc-cccchheeecccee---------------cceeecCCCceEEeecCCcee
Confidence 9999999987 89999888888876 699999999999999999986
No 164
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=9.2e-19 Score=145.11 Aligned_cols=173 Identities=16% Similarity=0.301 Sum_probs=132.0
Q ss_pred eecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCcee
Q 015290 96 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN 175 (409)
Q Consensus 96 ~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (409)
.+.||+ ++|..++|+| .+...|++||.|.+|+||++-.+.+....
T Consensus 76 ~v~GHt------------~~vLDi~w~P-fnD~vIASgSeD~~v~vW~IPe~~l~~~l---------------------- 120 (472)
T KOG0303|consen 76 LVCGHT------------APVLDIDWCP-FNDCVIASGSEDTKVMVWQIPENGLTRDL---------------------- 120 (472)
T ss_pred CccCcc------------ccccccccCc-cCCceeecCCCCceEEEEECCCcccccCc----------------------
Confidence 467888 9999999987 56779999999999999999765443221
Q ss_pred ccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCcee
Q 015290 176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCF 253 (409)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~ 253 (409)
..++..+ .+|...|--++|+|.. +.|+++ .|.+|.+||+. ++..+
T Consensus 121 -------------------------------tepvv~L-~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~-tgeal 167 (472)
T KOG0303|consen 121 -------------------------------TEPVVEL-YGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVG-TGEAL 167 (472)
T ss_pred -------------------------------ccceEEE-eecceeEEEEeecccchhhHhhccCCceEEEEecc-CCcee
Confidence 1233333 7999999999999974 567777 99999999999 55544
Q ss_pred eeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeee
Q 015290 254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 333 (409)
Q Consensus 254 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 333 (409)
-. +. |.+.|+++.|+.+| .+|++.+.|..|+|||.+.++.. ..-..|. ...-..+
T Consensus 168 i~-------l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v----~e~~~he------------G~k~~Ra 222 (472)
T KOG0303|consen 168 IT-------LD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVV----SEGVAHE------------GAKPARA 222 (472)
T ss_pred ee-------cC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEe----eeccccc------------CCCccee
Confidence 33 34 99999999999999 99999999999999999998752 1112221 1244567
Q ss_pred EeccCCCEEEEe-e---cCeEEEEEccCCCcc
Q 015290 334 KFANDGQHLLSR-D---YMNLKLWDIRMDSTP 361 (409)
Q Consensus 334 ~~s~~g~~l~sg-~---~~~v~iwd~~~~~~~ 361 (409)
.|-.+|.++.+| + +.++-|||...-.++
T Consensus 223 ifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP 254 (472)
T KOG0303|consen 223 IFLASGKIFTTGFSRMSERQIALWDPNNLEEP 254 (472)
T ss_pred EEeccCceeeeccccccccceeccCcccccCc
Confidence 788889877777 2 389999997653344
No 165
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2.2e-18 Score=134.02 Aligned_cols=233 Identities=15% Similarity=0.167 Sum_probs=159.1
Q ss_pred CcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccccee
Q 015290 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (409)
Q Consensus 33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (409)
..|.+-+++|.+++|+.|..+|.|-+..+...... +..++.-..+..+++|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~-----------------sa~~~gk~~iv~eqahd----------- 62 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG-----------------SAEPPGKLKIVPEQAHD----------- 62 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc-----------------ccCCCCCcceeeccccC-----------
Confidence 45677789999999999999999999998754321 00112223445568888
Q ss_pred ccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccc
Q 015290 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (409)
Q Consensus 113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (409)
++|+.++|+ | ..|++|+ ||.|+=|..+.....
T Consensus 63 -gpiy~~~f~---d-~~Lls~g-dG~V~gw~W~E~~es------------------------------------------ 94 (325)
T KOG0649|consen 63 -GPIYYLAFH---D-DFLLSGG-DGLVYGWEWNEEEES------------------------------------------ 94 (325)
T ss_pred -CCeeeeeee---h-hheeecc-CceEEEeeehhhhhh------------------------------------------
Confidence 999999993 3 3566655 599999988654221
Q ss_pred cceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceE
Q 015290 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (409)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (409)
.+.-++|......... ...-..|++|.+.|..+-++.+ .|+.++-||++ ++..... +.+|.+.+.
T Consensus 95 ~~~K~lwe~~~P~~~~------~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE-~G~i~r~-------~rGHtDYvH 160 (325)
T KOG0649|consen 95 LATKRLWEVKIPMQVD------AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLE-DGRIQRE-------YRGHTDYVH 160 (325)
T ss_pred ccchhhhhhcCccccC------cccCCccceeEeccCCCcEEEecCCeEEEEEEec-CCEEEEE-------EcCCcceee
Confidence 1122334332211100 1122468899999987777777 99999999999 7776666 799999999
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccc-ccceeeeEeccCCCEEEEeecCeE
Q 015290 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDGQHLLSRDYMNL 350 (409)
Q Consensus 272 ~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~sg~~~~v 350 (409)
++.--... ..+++|+.||++|+||.++++. .+.+..+.. ...+..| ..+|.+++-+. .+|++|+...+
T Consensus 161 ~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~-v~~ie~yk~-------~~~lRp~~g~wigala~~e--dWlvCGgGp~l 229 (325)
T KOG0649|consen 161 SVVGRNAN-GQILSGAEDGTVRVWDTKTQKH-VSMIEPYKN-------PNLLRPDWGKWIGALAVNE--DWLVCGGGPKL 229 (325)
T ss_pred eeeecccC-cceeecCCCccEEEEeccccce-eEEeccccC-------hhhcCcccCceeEEEeccC--ceEEecCCCce
Confidence 99984444 5788999999999999999873 222222211 1112222 34677777664 59999988999
Q ss_pred EEEEccCCCcceEEEec
Q 015290 351 KLWDIRMDSTPVATFKI 367 (409)
Q Consensus 351 ~iwd~~~~~~~~~~~~~ 367 (409)
.+|+++. .++...+.-
T Consensus 230 slwhLrs-se~t~vfpi 245 (325)
T KOG0649|consen 230 SLWHLRS-SESTCVFPI 245 (325)
T ss_pred eEEeccC-CCceEEEec
Confidence 9999986 666666553
No 166
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.2e-18 Score=148.62 Aligned_cols=233 Identities=15% Similarity=0.188 Sum_probs=158.7
Q ss_pred cceEEEEEEecCCCCEEEEE--eCCCeEEEEEcCCc--eeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290 114 EKINRVRWCAAPNGSMFILS--TNDKTIKLWKVRDQ--KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~--~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (409)
..+.++.| +... .|+++ +.|+.|++|.-... +....... ..+ ...+.....-..++.+++
T Consensus 35 pg~~s~~w--~~~n-~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~------------~gd-~~~Cv~~~s~S~y~~sgG 98 (673)
T KOG4378|consen 35 PGDFSFNW--QRRN-FLVVASMAGDKVMRIKEKDGKTPEVPRVRKL------------TGD-NAFCVACASQSLYEISGG 98 (673)
T ss_pred Ccceeeec--cccc-eEEEeecCCceeEEEecccCCCCccceeecc------------ccc-hHHHHhhhhcceeeeccC
Confidence 46899999 3443 34444 77889999975433 12111111 111 111111111123333333
Q ss_pred ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (409)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (409)
..+.|+|||++. +.+..++.+|+..|+++.++-...+||++ ..|.|.|..+. ++.....+ -.+...
T Consensus 99 --~~~~Vkiwdl~~----kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~-t~~~tt~f------~~~sgq 165 (673)
T KOG4378|consen 99 --QSGCVKIWDLRA----KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTK-TKQKTTTF------TIDSGQ 165 (673)
T ss_pred --cCceeeehhhHH----HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecc-cCccccce------ecCCCC
Confidence 388999999974 44444458999999999999999999999 99999999998 44443332 122234
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC-EEEEee-
Q 015290 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD- 346 (409)
Q Consensus 269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~sg~- 346 (409)
.|.-+.|+|....+|.+++.+|.|.+||+...... +. ....|..+...++|+|... +|++.+
T Consensus 166 svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~------~~----------~~~~HsAP~~gicfspsne~l~vsVG~ 229 (673)
T KOG4378|consen 166 SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI------FH----------ASEAHSAPCRGICFSPSNEALLVSVGY 229 (673)
T ss_pred eEEEeecccccceeeEeeccCCeEEEEeccCCCcc------cc----------hhhhccCCcCcceecCCccceEEEecc
Confidence 56789999998667888999999999999875431 11 1345678999999999775 455545
Q ss_pred cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 347 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
|+.|.+||.+. .+....+...... ..++|+++|.+|+.|+..|.|
T Consensus 230 Dkki~~yD~~s-~~s~~~l~y~~Pl----------------stvaf~~~G~~L~aG~s~G~~ 274 (673)
T KOG4378|consen 230 DKKINIYDIRS-QASTDRLTYSHPL----------------STVAFSECGTYLCAGNSKGEL 274 (673)
T ss_pred cceEEEeeccc-ccccceeeecCCc----------------ceeeecCCceEEEeecCCceE
Confidence 69999999985 5555555544333 489999999999999998865
No 167
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.82 E-value=2.7e-18 Score=150.72 Aligned_cols=156 Identities=22% Similarity=0.236 Sum_probs=119.0
Q ss_pred cceeEEEeCC-CCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEe
Q 015290 219 FNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (409)
Q Consensus 219 ~~v~~l~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd 296 (409)
..|+.+.|.| |.+.|+.+ +||.|++|.+...+ .-.....+...+..|...|+++.|+|-....|++++.|-+|++||
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~g-l~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANG-LPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCC-CCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 3466777777 45689988 99999999998433 222211222347889999999999998778999999999999999
Q ss_pred CCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCccccc
Q 015290 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKL 375 (409)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 375 (409)
+++.+.. .. +.+|.+.|..++|||||+.+|+.+ ||+|++|..++..+++..-++..+...
T Consensus 707 l~~~~~~----~~-------------l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRg-- 767 (1012)
T KOG1445|consen 707 LANAKLY----SR-------------LVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRG-- 767 (1012)
T ss_pred hhhhhhh----he-------------eccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcc--
Confidence 9987642 22 456789999999999999999987 699999999875566655554433221
Q ss_pred ccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290 376 CDLYNNDSIFDKFECSVSGDGLHFATGSYRR 406 (409)
Q Consensus 376 ~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg 406 (409)
-.+.|-=||+++++.+.|.
T Consensus 768 ------------ARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 768 ------------ARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred ------------eeEEEEecCcEEEEecccc
Confidence 2678888999999888775
No 168
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.4e-18 Score=146.83 Aligned_cols=250 Identities=13% Similarity=0.142 Sum_probs=174.7
Q ss_pred CCcEEEEEECCCCC-EEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 32 VDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 32 ~~~v~~v~~~~~~~-~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
..+|.+..|.|+|. .+++++.......||+.+.+.. .+..+.+++.
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~-------------------------k~~~~~g~e~-------- 303 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT-------------------------KLKPPYGVEE-------- 303 (514)
T ss_pred cCccceeeecCCCceEEEecccceEEEEeeccccccc-------------------------cccCCCCccc--------
Confidence 57899999999998 8899999999999999987752 2223344441
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc-eeeccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYHLE 189 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 189 (409)
..+..... ++++++|+.++..|.|.+.-..+++....++. ++.+....++.++. ++++++
T Consensus 304 ---~~~e~FeV--Shd~~fia~~G~~G~I~lLhakT~eli~s~Ki--------------eG~v~~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 304 ---KSMERFEV--SHDSNFIAIAGNNGHIHLLHAKTKELITSFKI--------------EGVVSDFTFSSDSKELLASGG 364 (514)
T ss_pred ---chhheeEe--cCCCCeEEEcccCceEEeehhhhhhhhheeee--------------ccEEeeEEEecCCcEEEEEcC
Confidence 45667777 79999999999999999998888876655432 23333333333333 334433
Q ss_pred ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (409)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (409)
+|.|.+||++.. .|++.+.....-.-++++.++++.+||+| ..|.|.|||...-. ...-+-+...+.....
T Consensus 365 ---~GeV~v~nl~~~---~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~--~s~~PkPik~~dNLtt 436 (514)
T KOG2055|consen 365 ---TGEVYVWNLRQN---SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF--ASTNPKPIKTVDNLTT 436 (514)
T ss_pred ---CceEEEEecCCc---ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhh--ccCCCCchhhhhhhhe
Confidence 789999999874 66666622222223567778999999999 99999999975211 0000001112455667
Q ss_pred ceEEEEEeCCCCCEEEEEeC--CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290 269 VITSAEFHPIYCNLLAYSSS--RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (409)
Q Consensus 269 ~v~~~~~~p~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~ 346 (409)
.|++++|+|+. ++||.+|. ...+++-.+.+-... ..|.. . ...-+.++|++|||.|-|||.|.
T Consensus 437 ~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~TVF----sNfP~-~---------n~~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 437 AITSLQFNHDA-QILAIASRVKKNALRLVHVPSCTVF----SNFPT-S---------NTKVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred eeeeeeeCcch-hhhhhhhhccccceEEEeccceeee----ccCCC-C---------CCcccceEEEEecCCCceEEeec
Confidence 89999999999 99988874 567888887763321 22222 0 11135799999999999999998
Q ss_pred c-CeEEEEEcc
Q 015290 347 Y-MNLKLWDIR 356 (409)
Q Consensus 347 ~-~~v~iwd~~ 356 (409)
+ |.|.+|.+.
T Consensus 502 e~grv~l~kL~ 512 (514)
T KOG2055|consen 502 EAGRVHLFKLH 512 (514)
T ss_pred CCCceeeEeec
Confidence 7 999999874
No 169
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.82 E-value=8.5e-18 Score=152.38 Aligned_cols=275 Identities=15% Similarity=0.190 Sum_probs=176.9
Q ss_pred cccceeeehhccCCCCCccccCCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCC
Q 015290 10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSH 88 (409)
Q Consensus 10 ~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (409)
..+.|.+.... .+...+.-...|++++|+| +..++|.|..+|.|.+||+..+...++
T Consensus 223 ~~~vW~~~~p~---~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~------------------- 280 (555)
T KOG1587|consen 223 VLLVWSLKNPN---TPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP------------------- 280 (555)
T ss_pred eEEEEecCCCC---CceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-------------------
Confidence 34567776651 2344444578999999999 678889999999999999987663100
Q ss_pred CceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceee-eeecc----------CC
Q 015290 89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEM----------DH 157 (409)
Q Consensus 89 ~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~----------~~ 157 (409)
...-.....|. .+++.+.|..++.+..|++++.||.|..|+++.-..- ..... ..
T Consensus 281 --s~ls~~~~sh~------------~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~ 346 (555)
T KOG1587|consen 281 --SGLSALEVSHS------------EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSK 346 (555)
T ss_pred --cccccccccCC------------cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccccccccccc
Confidence 00011123444 8999999976555567999999999999987643221 00000 01
Q ss_pred CcccccccccccccCceeccCCCCCceeecccccccceeEEEecCCccc-c----eeeeeeccccccceeEEEeCCCCCe
Q 015290 158 FPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH-A----RCQKVYPHAHDFNINSISNNSDCET 232 (409)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~----~~~~~~~~~~~~~v~~l~~~~~~~~ 232 (409)
.....++.|...+... +..|. ..|.|.--+-..... . +....+ ..|.++|+++.++|-+..
T Consensus 347 ~~~~t~~~F~~~~p~~-----------FiVGT--e~G~v~~~~r~g~~~~~~~~~~~~~~~-~~h~g~v~~v~~nPF~~k 412 (555)
T KOG1587|consen 347 AVGATSLKFEPTDPNH-----------FIVGT--EEGKVYKGCRKGYTPAPEVSYKGHSTF-ITHIGPVYAVSRNPFYPK 412 (555)
T ss_pred ccceeeEeeccCCCce-----------EEEEc--CCcEEEEEeccCCcccccccccccccc-cccCcceEeeecCCCccc
Confidence 1111222222222111 11111 144333322211111 1 222233 678999999999998766
Q ss_pred EEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccccc
Q 015290 233 FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR 311 (409)
Q Consensus 233 l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 311 (409)
++.. .|.+++||.......++.. +..+...+++++|||..+..|+++..||.|.+||+....... .....
T Consensus 413 ~fls~gDW~vriWs~~~~~~Pl~~-------~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P--v~s~~ 483 (555)
T KOG1587|consen 413 NFLSVGDWTVRIWSEDVIASPLLS-------LDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP--VLSQK 483 (555)
T ss_pred eeeeeccceeEeccccCCCCcchh-------hhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC--ccccc
Confidence 6655 8999999998733333322 456677799999999998899999999999999997643210 11111
Q ss_pred ccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEcc
Q 015290 312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIR 356 (409)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~ 356 (409)
. +....+.+.|++.|+.|++|++ |.+.+|++.
T Consensus 484 ~-------------~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 484 V-------------CSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred c-------------cccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 1 1346778899999999999987 999999995
No 170
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.6e-19 Score=168.45 Aligned_cols=203 Identities=19% Similarity=0.226 Sum_probs=147.9
Q ss_pred ccceEEEEEEecCCCC----EEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290 113 EEKINRVRWCAAPNGS----MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (409)
Q Consensus 113 ~~~v~~l~~~~s~~~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (409)
..+-+.++|. +.|. +|+.|..||.|.+||...-..-..
T Consensus 64 ~~rF~kL~W~--~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~------------------------------------ 105 (1049)
T KOG0307|consen 64 SNRFNKLAWG--SYGSHSHGLIAGGLEDGNIVLYDPASIIANAS------------------------------------ 105 (1049)
T ss_pred cccceeeeec--ccCCCccceeeccccCCceEEecchhhccCcc------------------------------------
Confidence 3578899995 4444 488889999999999864200000
Q ss_pred cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCC-eEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (409)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (409)
...+..+ ..|.+.|..+.|++... .|++| .||.|.|||+.........- -...
T Consensus 106 ------------------~~~la~~-~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~------~~~~ 160 (1049)
T KOG0307|consen 106 ------------------EEVLATK-SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG------SQAP 160 (1049)
T ss_pred ------------------hHHHhhh-cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC------CCCC
Confidence 0111222 67999999999999765 89999 99999999998433332210 1223
Q ss_pred cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC-CEEEEe
Q 015290 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR 345 (409)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~sg 345 (409)
.+.|.+++|+..-.++|++++.+|.+.|||+|..+.. -.+.. .+ -+..+..++|+|+. ..|+++
T Consensus 161 ~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi----i~ls~---~~--------~~~~~S~l~WhP~~aTql~~A 225 (1049)
T KOG0307|consen 161 PSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI----IKLSD---TP--------GRMHCSVLAWHPDHATQLLVA 225 (1049)
T ss_pred cccceEeccchhhhHHhhccCCCCCceeccccCCCcc----ccccc---CC--------CccceeeeeeCCCCceeeeee
Confidence 5679999999876689999999999999999987542 11111 10 02357899999987 344443
Q ss_pred --ec--CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCC-CeEEEcccCCCC
Q 015290 346 --DY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYRRDN 408 (409)
Q Consensus 346 --~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~l~s~s~dg~i 408 (409)
+| -.|.+||++....+++++.+|...+ .++.|++.+ .+|+|++.|+.|
T Consensus 226 s~dd~~PviqlWDlR~assP~k~~~~H~~Gi---------------lslsWc~~D~~lllSsgkD~~i 278 (1049)
T KOG0307|consen 226 SGDDSAPVIQLWDLRFASSPLKILEGHQRGI---------------LSLSWCPQDPRLLLSSGKDNRI 278 (1049)
T ss_pred cCCCCCceeEeecccccCCchhhhcccccce---------------eeeccCCCCchhhhcccCCCCe
Confidence 34 7899999998778999999999876 699999966 899999999976
No 171
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.81 E-value=1.3e-17 Score=134.82 Aligned_cols=222 Identities=14% Similarity=0.195 Sum_probs=163.7
Q ss_pred CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (409)
..+|+|.+|++|+..+|++.....|.||...+.. .++...++..|.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~------------------------~w~~~htls~Hd---------- 55 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD------------------------LWEPAHTLSEHD---------- 55 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCC------------------------CceeceehhhhC----------
Confidence 4689999999999999999999999999988765 356778889998
Q ss_pred eccceEEEEEEecCCCCEEEEEeCCCeEEEEEc-CCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
..|+.|.| +|.++.|++|+.|+.-++|.. ..++.+....
T Consensus 56 --~~vtgvdW--ap~snrIvtcs~drnayVw~~~~~~~Wkptlv------------------------------------ 95 (361)
T KOG1523|consen 56 --KIVTGVDW--APKSNRIVTCSHDRNAYVWTQPSGGTWKPTLV------------------------------------ 95 (361)
T ss_pred --cceeEEee--cCCCCceeEccCCCCccccccCCCCeecccee------------------------------------
Confidence 89999999 789999999999999999998 5554443321
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (409)
+..+....+++.|+|.++.+++| ....|.+|-++. ....-+ ....-+.+.+.
T Consensus 96 -----------------------LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~-ENdWWV---sKhikkPirSt 148 (361)
T KOG1523|consen 96 -----------------------LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ-ENDWWV---SKHIKKPIRST 148 (361)
T ss_pred -----------------------EEEeccceeeEeecCcCceEEeccCccEEEEEEEec-ccceeh---hhhhCCccccc
Confidence 14577889999999999999999 888999998873 322111 00002446788
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccc-cccccccccc--CCcccccccccceeeeEeccCCCEEEEee
Q 015290 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA-RILRDAAESH--GSKSFFTEIIASISDIKFANDGQHLLSRD 346 (409)
Q Consensus 270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~i~~~~~s~~g~~l~sg~ 346 (409)
|++++|+|++ -+|++|+.|+..++|..--.....++. ..+.. .-| ..+..+....+.+..+.|+|+|..|+-.+
T Consensus 149 v~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgs--k~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~ 225 (361)
T KOG1523|consen 149 VTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGS--KMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG 225 (361)
T ss_pred eeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCcc--CCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec
Confidence 9999999998 999999999999998643221100000 00000 000 01111223357899999999999999665
Q ss_pred -cCeEEEEEccC
Q 015290 347 -YMNLKLWDIRM 357 (409)
Q Consensus 347 -~~~v~iwd~~~ 357 (409)
|..+.+-|...
T Consensus 226 Hds~v~~~da~~ 237 (361)
T KOG1523|consen 226 HDSTVSFVDAAG 237 (361)
T ss_pred CCCceEEeecCC
Confidence 69999999864
No 172
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.80 E-value=2e-18 Score=135.80 Aligned_cols=293 Identities=12% Similarity=0.112 Sum_probs=184.6
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecC-CCcccccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKS 109 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~ 109 (409)
|...|+++.|-.+++ |.+|..-|.|++|++++... ...+++ |.
T Consensus 13 ~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~---------------------------~~~~r~~g~-------- 56 (323)
T KOG0322|consen 13 HSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERD---------------------------LPLIRLFGR-------- 56 (323)
T ss_pred ccchheehhhccchh-hhcccccceEEEEEeecCcc---------------------------chhhhhhcc--------
Confidence 889999999988765 88899999999999998763 334453 33
Q ss_pred ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcc-cccccccccccCceeccCCCCCceeecc
Q 015290 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF-VSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (409)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (409)
..|+.+.-. |+ ..+.+-+.|..+.+|++..+....+.......- .|-.+........ ...+.+.
T Consensus 57 ----~~it~lq~~--p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~--------eqll~yp 121 (323)
T KOG0322|consen 57 ----LFITNLQSI--PN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNS--------EQLLEYP 121 (323)
T ss_pred ----ceeeceeec--CC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcc--------hhheecC
Confidence 678888874 44 588999999999999998765544332111100 0000000000000 0001111
Q ss_pred cccccceeEEEecCCcccceeeeeeccccccceeEEEeCC-CCC--eEEEe-cCCeEEEEEccCCCceeeeeecCC----
Q 015290 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKP---- 260 (409)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~--~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~---- 260 (409)
....+ .+++-|............-..+..+.+.|..+.- .+. ++++| .+|.+.+||+......+ +++.
T Consensus 122 ~rgsd-e~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~---~~~~~~kv 197 (323)
T KOG0322|consen 122 SRGSD-ETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKII---QLPQSSKV 197 (323)
T ss_pred Ccccc-hhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceee---cccccccc
Confidence 10000 0111121111100100000134456677777533 233 34567 99999999998432221 1111
Q ss_pred -CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC
Q 015290 261 -SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (409)
Q Consensus 261 -~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 339 (409)
.....|..+|.++.|.+.- ..=++|+.+..+..|.+............... -...+..+.+-||+
T Consensus 198 ~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l-------------knpGv~gvrIRpD~ 263 (323)
T KOG0322|consen 198 ESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQIRKEITL-------------KNPGVSGVRIRPDG 263 (323)
T ss_pred ccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccccceEEe-------------cCCCccceEEccCC
Confidence 1245688999999999876 66778888888999987653111000011111 02468889999999
Q ss_pred CEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 340 QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 340 ~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
+.+|+++ |+.||||..++ .+++..++.|...+ .+++|+||...+|.+|.|+.|
T Consensus 264 KIlATAGWD~RiRVyswrt-l~pLAVLkyHsagv---------------n~vAfspd~~lmAaaskD~rI 317 (323)
T KOG0322|consen 264 KILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGV---------------NAVAFSPDCELMAAASKDARI 317 (323)
T ss_pred cEEeecccCCcEEEEEecc-CCchhhhhhhhcce---------------eEEEeCCCCchhhhccCCceE
Confidence 9999998 69999999997 99999999999876 599999999999999999986
No 173
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.79 E-value=1.3e-17 Score=135.25 Aligned_cols=274 Identities=15% Similarity=0.190 Sum_probs=177.3
Q ss_pred CCCcEEEEEECC-----CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290 31 DVDIVSAIEFDK-----TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (409)
Q Consensus 31 h~~~v~~v~~~~-----~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (409)
|..+|..++|++ +...+|+.+. .++.||....... .+.+......
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~------------------------ir~lq~y~D~----- 86 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGG------------------------IRLLQSYADE----- 86 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccc------------------------eeeeeeccCC-----
Confidence 788999999996 3356777765 4799999875431 1122222221
Q ss_pred ccccceeccceEEEEEEecCC--CCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc
Q 015290 106 YLKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (409)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (409)
++++.-..++|.-... ..++++++.-|.|+|.|+..+++...
T Consensus 87 -----d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~------------------------------- 130 (385)
T KOG1034|consen 87 -----DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKN------------------------------- 130 (385)
T ss_pred -----CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccc-------------------------------
Confidence 1226778888854221 34788889999999999987755332
Q ss_pred eeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCceeeeeecCCC
Q 015290 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (409)
Q Consensus 184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~ 261 (409)
+ .+|...|+.+.++|+. ++++++ .|.+|++|+++ +..++.++ .
T Consensus 131 -----------------------------~-~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~-~~~Cv~Vf----G 175 (385)
T KOG1034|consen 131 -----------------------------Y-RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ-TDVCVAVF----G 175 (385)
T ss_pred -----------------------------e-eccCccchhhhcCCCCCcEEEEecCCceEEEEecc-CCeEEEEe----c
Confidence 2 6899999999999985 677788 99999999999 78888775 3
Q ss_pred cCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccc--cccc-cc--------ccCCcccccccccce
Q 015290 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI--LRDA-AE--------SHGSKSFFTEIIASI 330 (409)
Q Consensus 262 ~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~~-~~--------~~~~~~~~~~~~~~i 330 (409)
-..+|.+.|.++.|+++| .+|++++.|..|++|++...+...+.... +... .. .-...++-.-|...|
T Consensus 176 G~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred ccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 357899999999999999 89999999999999999864432111111 0000 00 000111234578888
Q ss_pred eeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 331 SDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 331 ~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
.|+.|- |.++++-+ ++.|..|....-++-+...+..+.....+..+.-..|-.--...+|.|-+++||.|...|.|
T Consensus 255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v 331 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKV 331 (385)
T ss_pred HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcE
Confidence 888887 57888865 59999998721122222222122111111111111111101345666678899998888765
No 174
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.79 E-value=2.2e-17 Score=131.76 Aligned_cols=256 Identities=10% Similarity=0.101 Sum_probs=172.7
Q ss_pred ccCCCcEEEEEECCCC-----CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcc
Q 015290 29 LQDVDIVSAIEFDKTG-----DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (409)
Q Consensus 29 ~~h~~~v~~v~~~~~~-----~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 103 (409)
+.|.-+++.+.|.|+. ++||+++. .+|+|.+...+. ...+...+..+.
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~-----------------------~~~~~~~L~~~k-- 145 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEES-----------------------RVELQSVLNNNK-- 145 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCC-----------------------ceehhhhhccCc--
Confidence 4588899999999976 46777653 799999885432 111111222221
Q ss_pred ccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCcee--eeeeccCCCcccccccccccccCceeccCCCC
Q 015290 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV--KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (409)
Q Consensus 104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (409)
.-++.+++++..|+ .-+-+++.+++-|-+..|||+..+.. .+..-..+..++..+.|....
T Consensus 146 -----ns~~~aPlTSFDWn-e~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s----------- 208 (364)
T KOG0290|consen 146 -----NSEFCAPLTSFDWN-EVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGS----------- 208 (364)
T ss_pred -----ccccCCcccccccc-cCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCc-----------
Confidence 11222799999997 57888999999999999999998732 222222333333333333322
Q ss_pred CceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEE-e-cCCeEEEEEccCCCceeeeeec
Q 015290 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVS-A-DDLRINLWNLEISDQCFNIVDM 258 (409)
Q Consensus 182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~-~-~d~~i~lwd~~~~~~~~~~~~~ 258 (409)
..++++. +.||.+|++|+........+..- .....+...++|+++. +++|+ + ....|.+.|++.....+..
T Consensus 209 ~~~FASv--gaDGSvRmFDLR~leHSTIIYE~-p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~--- 282 (364)
T KOG0290|consen 209 RDVFASV--GADGSVRMFDLRSLEHSTIIYED-PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR--- 282 (364)
T ss_pred cceEEEe--cCCCcEEEEEecccccceEEecC-CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh---
Confidence 2233333 34999999999876555555432 1224567789999864 66776 4 6778999999966666655
Q ss_pred CCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccc--cccccccccccccccCCcccccccccceeeeEec
Q 015290 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL--CDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (409)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 336 (409)
+.+|.+.|+.++|.|..+..|++++.|..+.+||+...-. ...++-.+.. .+.|+.+.|+
T Consensus 283 ----L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a--------------~~EVNqi~Ws 344 (364)
T KOG0290|consen 283 ----LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA--------------GGEVNQIQWS 344 (364)
T ss_pred ----hhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhc--------------cceeeeeeec
Confidence 7899999999999999888999999999999999976321 1111122222 4689999999
Q ss_pred c-CCCEEEEeecCeEEE
Q 015290 337 N-DGQHLLSRDYMNLKL 352 (409)
Q Consensus 337 ~-~g~~l~sg~~~~v~i 352 (409)
+ .+.+++.+..+.+.+
T Consensus 345 ~~~~Dwiai~~~kklei 361 (364)
T KOG0290|consen 345 SSQPDWIAICFGKKLEI 361 (364)
T ss_pred ccCCCEEEEEecCeeeE
Confidence 6 467888886655443
No 175
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=1e-17 Score=144.23 Aligned_cols=176 Identities=16% Similarity=0.260 Sum_probs=136.3
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (409)
++|.+-.| +|||.-|++++.||.|++|.-... +...
T Consensus 105 ~A~~~gRW--~~dGtgLlt~GEDG~iKiWSrsGM-LRSt----------------------------------------- 140 (737)
T KOG1524|consen 105 AAISSGRW--SPDGAGLLTAGEDGVIKIWSRSGM-LRST----------------------------------------- 140 (737)
T ss_pred hhhhhccc--CCCCceeeeecCCceEEEEeccch-HHHH-----------------------------------------
Confidence 88999999 799999999999999999975332 1111
Q ss_pred ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEE
Q 015290 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (409)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 273 (409)
+.....+|.|++|.|+.+.++.+..+.+.|=-+....+.++ ...|.+-|.++
T Consensus 141 --------------------l~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~--------WkAHDGiiL~~ 192 (737)
T KOG1524|consen 141 --------------------VVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIR--------WRAHDGLVLSL 192 (737)
T ss_pred --------------------HhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeE--------EeccCcEEEEe
Confidence 12344679999999999999888777888877774444443 68999999999
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEE
Q 015290 274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW 353 (409)
Q Consensus 274 ~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iw 353 (409)
.|+|.. .++++|+.|-..++||..... .+.. ..|..+|++++|.|+ +.++.++.+++|+=
T Consensus 193 ~W~~~s-~lI~sgGED~kfKvWD~~G~~-------Lf~S-----------~~~ey~ITSva~npd-~~~~v~S~nt~R~~ 252 (737)
T KOG1524|consen 193 SWSTQS-NIIASGGEDFRFKIWDAQGAN-------LFTS-----------AAEEYAITSVAFNPE-KDYLLWSYNTARFS 252 (737)
T ss_pred ecCccc-cceeecCCceeEEeecccCcc-------cccC-----------Chhccceeeeeeccc-cceeeeeeeeeeec
Confidence 999998 999999999999999976643 2322 345679999999999 77788887777722
Q ss_pred EccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 354 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 354 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
..+ .+. + +.++||+||..+++|+..|.+
T Consensus 253 ~p~------------~GS------------i---fnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 253 SPR------------VGS------------I---FNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred CCC------------ccc------------e---EEEEEcCCCceeeccccCceE
Confidence 211 121 2 599999999999999988754
No 176
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=9.8e-18 Score=144.82 Aligned_cols=246 Identities=21% Similarity=0.284 Sum_probs=163.1
Q ss_pred CCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc
Q 015290 25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (409)
Q Consensus 25 ~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (409)
..+..+|.+.|+|++|+.+|.+||+|+.|-.+.|||.-..+. ....-.||.
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl--------------------------lhsI~TgHt--- 93 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL--------------------------LHSISTGHT--- 93 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcce--------------------------eeeeecccc---
Confidence 345567999999999999999999999999999999875442 233457888
Q ss_pred cccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (409)
Q Consensus 105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (409)
+.|.++.|.|-.+...+++|+.|+.|+++|+...+..-... ..
T Consensus 94 ---------aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~---~~------------------------- 136 (758)
T KOG1310|consen 94 ---------ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDH---GM------------------------- 136 (758)
T ss_pred ---------cceeEEeeeccCCCeEEEeccCcceEEEEeccccccccccc---Cc-------------------------
Confidence 89999999997778899999999999999997532211100 00
Q ss_pred eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCceeeeeecCC--
Q 015290 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKP-- 260 (409)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~-- 260 (409)
.-+++. + ..|...|..++..|++ ..+.++ .||+|+-+|++..-.+-...+...
T Consensus 137 --------~~~~~~--------------~-~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l 193 (758)
T KOG1310|consen 137 --------EETTRC--------------W-SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSIL 193 (758)
T ss_pred --------cchhhh--------------h-hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHH
Confidence 001112 2 5788899999999998 677788 999999999994332221110000
Q ss_pred CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccC-----Cccccccc---------
Q 015290 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG-----SKSFFTEI--------- 326 (409)
Q Consensus 261 ~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--------- 326 (409)
..+...--...++.++|..+.+|+.|+.|...++||.|............ ...|. ..-...+|
T Consensus 194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~---~~~pp~~~~cv~yf~p~hlkn~~gn~~ 270 (758)
T KOG1310|consen 194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTM---NTCPPKDCRCVRYFSPGHLKNSQGNLD 270 (758)
T ss_pred HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccc---cCCCCcccchhheecCccccCcccccc
Confidence 01111123467899999998999999999999999965422110000000 00110 01111111
Q ss_pred --ccceeeeEeccCCCEEEEe-ecCeEEEEEccCCCcce
Q 015290 327 --IASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPV 362 (409)
Q Consensus 327 --~~~i~~~~~s~~g~~l~sg-~~~~v~iwd~~~~~~~~ 362 (409)
-..++-++|+|+|.-|+.. +...|+++|+..+..+.
T Consensus 271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 1235678999999655544 55899999997633333
No 177
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=1.3e-15 Score=134.77 Aligned_cols=252 Identities=10% Similarity=0.080 Sum_probs=148.2
Q ss_pred cceEEEEEEecCCCCEEEEE-eCCCeEEEEEcCC-ceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290 114 EKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (409)
+....+++ +|++++|+++ ..++.|.+|++.. +.+....... ..+....+..++++.+++.+...
T Consensus 35 ~~~~~l~~--spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~------------~~~~p~~i~~~~~g~~l~v~~~~ 100 (330)
T PRK11028 35 GQVQPMVI--SPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP------------LPGSPTHISTDHQGRFLFSASYN 100 (330)
T ss_pred CCCccEEE--CCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec------------CCCCceEEEECCCCCEEEEEEcC
Confidence 45667888 7999988766 4578899999973 3332221111 01122334455666666655432
Q ss_pred ccceeEEEecCCcc-cceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290 192 ENMATKIANVGNSV-HARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (409)
Q Consensus 192 ~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (409)
++.+.+|+++... ....+... .+.....+++++|++++++++ .++.|.+||+...+...... ........ ..
T Consensus 101 -~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~-~~~~~~~~-g~ 175 (330)
T PRK11028 101 -ANCVSVSPLDKDGIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE-PAEVTTVE-GA 175 (330)
T ss_pred -CCeEEEEEECCCCCCCCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-CCceecCC-CC
Confidence 6789999986421 11222222 122345778899999988765 78999999998333221100 00000111 23
Q ss_pred ceEEEEEeCCCCCEEEEEeC-CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-
Q 015290 269 VITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (409)
Q Consensus 269 ~v~~~~~~p~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~- 346 (409)
....+.|+|+| ++++++.. ++.|.+||+............+...+.. +. +......+.++|+|++|+++.
T Consensus 176 ~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~------~~-~~~~~~~i~~~pdg~~lyv~~~ 247 (330)
T PRK11028 176 GPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD------FS-DTRWAADIHITPDGRHLYACDR 247 (330)
T ss_pred CCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc------CC-CCccceeEEECCCCCEEEEecC
Confidence 45789999999 88777765 8999999997421110111111110000 00 012334688999999999885
Q ss_pred -cCeEEEEEccCCCcce---EEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEccc-CCCC
Q 015290 347 -YMNLKLWDIRMDSTPV---ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-RRDN 408 (409)
Q Consensus 347 -~~~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~-dg~i 408 (409)
++.|.+|++...+..+ ..+.....+ ..++++|||++|++++. +++|
T Consensus 248 ~~~~I~v~~i~~~~~~~~~~~~~~~~~~p----------------~~~~~~~dg~~l~va~~~~~~v 298 (330)
T PRK11028 248 TASLISVFSVSEDGSVLSFEGHQPTETQP----------------RGFNIDHSGKYLIAAGQKSHHI 298 (330)
T ss_pred CCCeEEEEEEeCCCCeEEEeEEEeccccC----------------CceEECCCCCEEEEEEccCCcE
Confidence 3999999997533322 222221112 47999999999997765 5554
No 178
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.78 E-value=9.8e-18 Score=147.24 Aligned_cols=213 Identities=15% Similarity=0.179 Sum_probs=150.1
Q ss_pred ccCCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290 29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (409)
Q Consensus 29 ~~h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (409)
+.....|+.+.|+| |...||+++.||.|+||.+..+... .+...+-..+.+|.
T Consensus 624 l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~--------------------e~~~tPe~~lt~h~------ 677 (1012)
T KOG1445|consen 624 LFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP--------------------ENEMTPEKILTIHG------ 677 (1012)
T ss_pred cccCceeeecccCCCChHHeeecccCceEEEEEeccCCCC--------------------cccCCcceeeeccc------
Confidence 33567899999999 8889999999999999999876531 12334556788998
Q ss_pred ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (409)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
+.|+++.|+| -....|++++.|-+|++||+.+.+....
T Consensus 678 ------eKI~slRfHP-LAadvLa~asyd~Ti~lWDl~~~~~~~~----------------------------------- 715 (1012)
T KOG1445|consen 678 ------EKITSLRFHP-LAADVLAVASYDSTIELWDLANAKLYSR----------------------------------- 715 (1012)
T ss_pred ------ceEEEEEecc-hhhhHhhhhhccceeeeeehhhhhhhhe-----------------------------------
Confidence 8999999987 4556999999999999999998755432
Q ss_pred ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (409)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (409)
+.+|.+.|..++|+|+|+.+++. .||+|++|+.+...+.+.. -.+-
T Consensus 716 --------------------------l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~E-------g~gp 762 (1012)
T KOG1445|consen 716 --------------------------LVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYE-------GKGP 762 (1012)
T ss_pred --------------------------eccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcccc-------CCCC
Confidence 26899999999999999999998 9999999999855544432 1111
Q ss_pred -cCceEEEEEeCCCCCEEEEEeCC----CeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC-
Q 015290 267 -TEVITSAEFHPIYCNLLAYSSSR----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ- 340 (409)
Q Consensus 267 -~~~v~~~~~~p~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~- 340 (409)
...--.+.|.-+| ++++..+.| ..|.+||..+-....-....+.. ...+.--.+.+|..
T Consensus 763 vgtRgARi~wacdg-r~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv--------------aps~LvP~YD~Ds~~ 827 (1012)
T KOG1445|consen 763 VGTRGARILWACDG-RIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV--------------APSPLVPHYDYDSNV 827 (1012)
T ss_pred ccCcceeEEEEecC-cEEEEecccccchhhhhhhhhhhccCCcceeeeecc--------------cCccccccccCCCce
Confidence 1222457788888 777776654 46778876553210000011111 11222234455655
Q ss_pred EEEEe-ecCeEEEEEccC
Q 015290 341 HLLSR-DYMNLKLWDIRM 357 (409)
Q Consensus 341 ~l~sg-~~~~v~iwd~~~ 357 (409)
++++| +|..|.+|.+..
T Consensus 828 lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 828 LFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred EEEecCCCceEEEEEecC
Confidence 45567 579999999864
No 179
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=7.7e-17 Score=147.03 Aligned_cols=217 Identities=12% Similarity=0.097 Sum_probs=145.9
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecC---CeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290 29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (409)
Q Consensus 29 ~~h~~~v~~v~~~~~~~~la~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (409)
..|...+.+++|+|||++||.++.+ ..|.+||+.+++. +.+..+.+|.
T Consensus 200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-------------------------~~l~~~~g~~---- 250 (429)
T PRK01742 200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-------------------------KVVASFRGHN---- 250 (429)
T ss_pred ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-------------------------EEEecCCCcc----
Confidence 4467789999999999999988754 3699999987652 1233344443
Q ss_pred ccccceeccceEEEEEEecCCCCEEEEEe-CCCeEEEE--EcCCceeeeeeccCCCcccccccccccccCceeccCCCCC
Q 015290 106 YLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLW--KVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (409)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~-~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (409)
..++| +|||+.|+.++ .++.+.|| |+.++....+
T Consensus 251 -----------~~~~w--SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~l------------------------------ 287 (429)
T PRK01742 251 -----------GAPAF--SPDGSRLAFASSKDGVLNIYVMGANGGTPSQL------------------------------ 287 (429)
T ss_pred -----------CceeE--CCCCCEEEEEEecCCcEEEEEEECCCCCeEee------------------------------
Confidence 35789 89999888764 67876666 4444432221
Q ss_pred ceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCC
Q 015290 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKP 260 (409)
Q Consensus 183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~ 260 (409)
..+...+....|+|||+.|+.+ .++...||++...+.....
T Consensus 288 --------------------------------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~----- 330 (429)
T PRK01742 288 --------------------------------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL----- 330 (429)
T ss_pred --------------------------------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-----
Confidence 2344456788999999987754 6788899987633333332
Q ss_pred CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC
Q 015290 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (409)
Q Consensus 261 ~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 340 (409)
+ .+.. ....|+|+| ++|+..+.++ +.+||+.+++. ..+.. ......+.|+|||+
T Consensus 331 --l-~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~-----~~lt~--------------~~~~~~~~~sPdG~ 384 (429)
T PRK01742 331 --V-GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTSGST-----EVLSS--------------TFLDESPSISPNGI 384 (429)
T ss_pred --e-cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCCCCe-----EEecC--------------CCCCCCceECCCCC
Confidence 1 2222 457899999 8888877765 55699988653 11111 01234678999999
Q ss_pred EEEEee-cCeEEEEEcc-CCCcceEEEecccCcccccccccCCCCccceeeEEEcCC
Q 015290 341 HLLSRD-YMNLKLWDIR-MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD 395 (409)
Q Consensus 341 ~l~sg~-~~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 395 (409)
+|+.++ ++.+.+|.+. .+++....+..|...+ ...+|+|-
T Consensus 385 ~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~---------------~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQV---------------KFPAWSPY 426 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCCceEEccCCCCCC---------------CCcccCCC
Confidence 999886 4666666642 2378888888777654 47899984
No 180
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=1.6e-18 Score=156.47 Aligned_cols=251 Identities=18% Similarity=0.243 Sum_probs=174.9
Q ss_pred ccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (409)
Q Consensus 27 ~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (409)
..++|.++|+|+.|...|.++++|+.|..|+||..++.. ++..+.||+
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~---------------------------~lAs~rGhs----- 232 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR---------------------------CLASCRGHS----- 232 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchh---------------------------hhccCCCCc-----
Confidence 345699999999999999999999999999999988776 578899999
Q ss_pred cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (409)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (409)
+.|+.++. +.+..++++++.|..|++|.+..+..+.+
T Consensus 233 -------~ditdlav--s~~n~~iaaaS~D~vIrvWrl~~~~pvsv---------------------------------- 269 (1113)
T KOG0644|consen 233 -------GDITDLAV--SSNNTMIAAASNDKVIRVWRLPDGAPVSV---------------------------------- 269 (1113)
T ss_pred -------cccchhcc--chhhhhhhhcccCceEEEEecCCCchHHH----------------------------------
Confidence 89999999 67778889999999999999988755433
Q ss_pred cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (409)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (409)
+.+|.+.|++++|+|-. .++.||++++||.+ -...+.. -++..+. .
T Consensus 270 ---------------------------LrghtgavtaiafsP~~---sss~dgt~~~wd~r-~~~~~y~--prp~~~~-~ 315 (1113)
T KOG0644|consen 270 ---------------------------LRGHTGAVTAIAFSPRA---SSSDDGTCRIWDAR-LEPRIYV--PRPLKFT-E 315 (1113)
T ss_pred ---------------------------HhccccceeeeccCccc---cCCCCCceEecccc-ccccccC--CCCCCcc-c
Confidence 27899999999999965 33399999999988 1111111 0111111 2
Q ss_pred cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccc----------------------ccccccccccccCCccccc
Q 015290 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH----------------------SARILRDAAESHGSKSFFT 324 (409)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 324 (409)
...+.++.|...+ .-+++++.|+.-..|.+..-..... .++.|+. ..-.....+.
T Consensus 316 ~~~~~s~~~~~~~-~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl--~~g~l~H~l~ 392 (1113)
T KOG0644|consen 316 KDLVDSILFENNG-DRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNL--YTGQLLHNLM 392 (1113)
T ss_pred ccceeeeeccccc-cccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeec--ccchhhhhhc
Confidence 2456667777776 7777777777766665432110000 0011111 0000112245
Q ss_pred ccccceeeeEeccCCCEEE-Eee-cCeEEEEEccCCCcceEEEe-cccCcccccccccCCCCccceeeEEEcCCCCeEEE
Q 015290 325 EIIASISDIKFANDGQHLL-SRD-YMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (409)
Q Consensus 325 ~~~~~i~~~~~s~~g~~l~-sg~-~~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s 401 (409)
+|...+..+.++|-...++ +++ ||...|||+.. +.+++.+. +|... ...+||+||..++.
T Consensus 393 ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~e-g~pik~y~~gh~kl----------------~d~kFSqdgts~~l 455 (1113)
T KOG0644|consen 393 GHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE-GIPIKHYFIGHGKL----------------VDGKFSQDGTSIAL 455 (1113)
T ss_pred ccccceeeeeecCCCcHhhhhccCCCceEeeeccc-CCcceeeeccccee----------------eccccCCCCceEec
Confidence 6788899999999776555 444 69999999985 77766654 34433 48899999887765
Q ss_pred cccCC
Q 015290 402 GSYRR 406 (409)
Q Consensus 402 ~s~dg 406 (409)
...-|
T Consensus 456 sd~hg 460 (1113)
T KOG0644|consen 456 SDDHG 460 (1113)
T ss_pred CCCCC
Confidence 54444
No 181
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.77 E-value=4.3e-17 Score=137.78 Aligned_cols=249 Identities=13% Similarity=0.115 Sum_probs=167.6
Q ss_pred cccCCCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290 28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (409)
...|..+|.++.|+| +-..+++.+.||+|++-|+++.... .+..+..-.
T Consensus 230 f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e-------------------------~v~s~~~d~----- 279 (498)
T KOG4328|consen 230 FTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE-------------------------EVLSLDTDN----- 279 (498)
T ss_pred eccCCccccceEecCCChhheeeeccCceeeeeeecchhhH-------------------------HHhhcCccc-----
Confidence 344899999999999 5567889999999999999876421 111222122
Q ss_pred cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (409)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (409)
....++.| +.+...++.+..=|...+||.+.+......
T Consensus 280 -------~~fs~~d~--~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~--------------------------------- 317 (498)
T KOG4328|consen 280 -------IWFSSLDF--SAESRSVLFGDNVGNFNVIDLRTDGSEYEN--------------------------------- 317 (498)
T ss_pred -------eeeeeccc--cCCCccEEEeecccceEEEEeecCCccchh---------------------------------
Confidence 46677788 566667777777778999999876432110
Q ss_pred cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCceee-eeecCCCcC
Q 015290 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFN-IVDMKPSNM 263 (409)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~-~~~~~~~~~ 263 (409)
+.-|...|.+|+++|-. .+|+++ .|++.+|||++.-..... . ...
T Consensus 318 ---------------------------~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~-----lst 365 (498)
T KOG4328|consen 318 ---------------------------LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPF-----LST 365 (498)
T ss_pred ---------------------------hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcc-----eec
Confidence 14577799999999975 567788 999999999984222111 1 114
Q ss_pred cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (409)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 343 (409)
..|...|.++.|+|.+ -.|++.+.|..|+|||..--........... |... ..- --......|.|+..+++
T Consensus 366 ~~HrrsV~sAyFSPs~-gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~------t~R-wlT~fKA~W~P~~~li~ 436 (498)
T KOG4328|consen 366 LPHRRSVNSAYFSPSG-GTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNR------TGR-WLTPFKAAWDPDYNLIV 436 (498)
T ss_pred ccccceeeeeEEcCCC-CceEeeccCCceEEeecccccccCCccceee-ccCc------ccc-cccchhheeCCCccEEE
Confidence 5689999999999999 5599999999999999741000000001111 1000 000 11345678999999999
Q ss_pred Eeec-CeEEEEEccCCCcceEEEecccC-cccccccccCCCCccceeeEEEcCCCCeEEEccc
Q 015290 344 SRDY-MNLKLWDIRMDSTPVATFKIHEH-LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (409)
Q Consensus 344 sg~~-~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~ 404 (409)
+|.. ..|-|+|-.. ++.+..+..... .++ .-.+|+|-+..+++|+.
T Consensus 437 vg~~~r~IDv~~~~~-~q~v~el~~P~~~tI~--------------~vn~~HP~~~~~~aG~~ 484 (498)
T KOG4328|consen 437 VGRYPRPIDVFDGNG-GQMVCELHDPESSTIP--------------SVNEFHPMRDTLAAGGN 484 (498)
T ss_pred EeccCcceeEEcCCC-CEEeeeccCccccccc--------------cceeecccccceeccCC
Confidence 9987 8899999863 676666544333 332 24789998885665543
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.77 E-value=9.4e-17 Score=128.19 Aligned_cols=157 Identities=16% Similarity=0.197 Sum_probs=122.5
Q ss_pred cccccceeEEEeCC-CCCeEEEe-cCCeEEEEEccCCCce--eeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCC
Q 015290 215 HAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQC--FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290 (409)
Q Consensus 215 ~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg 290 (409)
..+.+++++..|+. +.+++.++ -|-+..|||++ .+.. +++ .+..|...|..++|...+..+||+.+.||
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie-~~~~~~vkT------QLIAHDKEV~DIaf~~~s~~~FASvgaDG 219 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIE-TGVSGTVKT------QLIAHDKEVYDIAFLKGSRDVFASVGADG 219 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEe-eccccceee------EEEecCcceeEEEeccCccceEEEecCCC
Confidence 34667899999986 45677777 89999999999 4322 222 26789999999999998778999999999
Q ss_pred eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC-CEEEEe-ec-CeEEEEEccCCCcceEEEec
Q 015290 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR-DY-MNLKLWDIRMDSTPVATFKI 367 (409)
Q Consensus 291 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~sg-~~-~~v~iwd~~~~~~~~~~~~~ 367 (409)
.+|+||+|..+.. --+++. |.. ..++..++|++.. +|||+- .+ ..|.|.|++.+..++..+.+
T Consensus 220 SvRmFDLR~leHS---TIIYE~----p~~-------~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~ 285 (364)
T KOG0290|consen 220 SVRMFDLRSLEHS---TIIYED----PSP-------STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN 285 (364)
T ss_pred cEEEEEecccccc---eEEecC----CCC-------CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhc
Confidence 9999999985421 112222 111 3578899999854 788875 35 99999999998899999999
Q ss_pred ccCcccccccccCCCCccceeeEEEcCC-CCeEEEcccCCC
Q 015290 368 HEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYRRD 407 (409)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~s~s~dg~ 407 (409)
|...+ ..++|.|. ...|+||++|..
T Consensus 286 H~a~V---------------NgIaWaPhS~~hictaGDD~q 311 (364)
T KOG0290|consen 286 HQASV---------------NGIAWAPHSSSHICTAGDDCQ 311 (364)
T ss_pred Ccccc---------------cceEecCCCCceeeecCCcce
Confidence 99987 59999996 567889998864
No 183
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.2e-16 Score=143.90 Aligned_cols=294 Identities=15% Similarity=0.106 Sum_probs=190.4
Q ss_pred EEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccce
Q 015290 37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (409)
Q Consensus 37 ~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 116 (409)
.-.|++|+++++.+. +..|+||...+++ +++.+.+|. .++
T Consensus 21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~---------------------------~i~~l~~~~------------a~l 60 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCT-GNFVKVYSTATGE---------------------------CITSLEDHT------------APL 60 (792)
T ss_pred ccccccCCcEEEEee-CCEEEEEecchHh---------------------------hhhhccccc------------Ccc
Confidence 446999999988776 4589999999987 456789999 899
Q ss_pred EEEEEEecCCC-CEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccce
Q 015290 117 NRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (409)
Q Consensus 117 ~~l~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (409)
.++.+.|++.. .++++++.||+|++||...+.+.+....+.....................+..+...+...+....++
T Consensus 61 ~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q 140 (792)
T KOG1963|consen 61 TSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQ 140 (792)
T ss_pred ceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccc
Confidence 99999775443 57889999999999999999988877665544322221000010011111111112222222212223
Q ss_pred eEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEE
Q 015290 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 275 (409)
Q Consensus 196 i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 275 (409)
.+-..+.+... ....++.++.. -.++.+++.|++.+...+..+.+|+.....+ ... ....-..|...+++.++
T Consensus 141 ~~~~~~~t~~~--~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~--~~~--~~~~~~~Htf~~t~~~~ 213 (792)
T KOG1963|consen 141 SSRFVLATFDS--AKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTK--HTS--SRDITVHHTFNITCVAL 213 (792)
T ss_pred eeeeEeeeccc--cchhhhhhhcC-CccEEEcCCceEEEEEEeeeEEEEEecccce--eec--cchhhhhhcccceeEEe
Confidence 33333322110 01111123322 4678889989888777777889999883221 111 00112446677899999
Q ss_pred eCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEE
Q 015290 276 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWD 354 (409)
Q Consensus 276 ~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd 354 (409)
+|++ +++|+|..||.|.+|.--..+. ..+ ..+.+.-|...|++++|+++|.+|++|+. +.+-+|.
T Consensus 214 spn~-~~~Aa~d~dGrI~vw~d~~~~~-----~~~--------t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq 279 (792)
T KOG1963|consen 214 SPNE-RYLAAGDSDGRILVWRDFGSSD-----DSE--------TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQ 279 (792)
T ss_pred cccc-ceEEEeccCCcEEEEecccccc-----ccc--------cceEEEecccccceeEEecCCceEeecccceEEEEEe
Confidence 9999 9999999999999996433111 111 11234456789999999999999999986 9999999
Q ss_pred ccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 355 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
+.+ ++ .+-++.-..++ ..+.+|||+.+.+....|+.|
T Consensus 280 ~~T-~~-kqfLPRLgs~I---------------~~i~vS~ds~~~sl~~~DNqI 316 (792)
T KOG1963|consen 280 LET-GK-KQFLPRLGSPI---------------LHIVVSPDSDLYSLVLEDNQI 316 (792)
T ss_pred ecC-CC-cccccccCCee---------------EEEEEcCCCCeEEEEecCceE
Confidence 987 33 33333334443 689999999998888888765
No 184
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=5.5e-17 Score=134.69 Aligned_cols=259 Identities=13% Similarity=0.085 Sum_probs=174.0
Q ss_pred cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (409)
..+|.+.|.++.|+.++++||+|+.|..+++|.++.... ++.. +++. +.+|.
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~-------~k~~--------------KPI~-~~~~~------ 103 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV-------RKTP--------------KPIG-VMEHP------ 103 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh-------hcCC--------------CCce-eccCc------
Confidence 456999999999999999999999999999999875321 0000 1122 33333
Q ss_pred ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (409)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
|...|.|++| ......+++|..+++|...|+.+.+.+.+...
T Consensus 104 ----H~SNIF~L~F--~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~-------------------------------- 145 (609)
T KOG4227|consen 104 ----HRSNIFSLEF--DLENRFLYSGERWGTVIKHDIETKQSIYVANE-------------------------------- 145 (609)
T ss_pred ----cccceEEEEE--ccCCeeEecCCCcceeEeeecccceeeeeecc--------------------------------
Confidence 1278999999 67788999999999999999998765443220
Q ss_pred ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (409)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (409)
....+.|..+..+|..+.|++. .++.|.+||.+........+- ....
T Consensus 146 ---------------------------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~-----~AN~ 193 (609)
T KOG4227|consen 146 ---------------------------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL-----PANS 193 (609)
T ss_pred ---------------------------cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee-----ecCC
Confidence 2345689999999999999998 999999999984332433321 1223
Q ss_pred cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (409)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~ 346 (409)
....+++.|+|..|.+|++.+..+-+.+||.+..... ++.. ... ..+......-.++.|+|.|..+.+--
T Consensus 194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~-----~~~~-~~~----~~L~~~~~~~M~~~~~~~G~Q~msiR 263 (609)
T KOG4227|consen 194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP-----VYQR-SMF----KGLPQENTEWMGSLWSPSGNQFMSIR 263 (609)
T ss_pred CccceeeeecCCCceeEEeccccCCCCceeeccccch-----HHhh-hcc----ccCcccchhhhheeeCCCCCeehhhh
Confidence 4567899999999899999999999999999885431 1111 000 00011012346789999998777664
Q ss_pred c-CeEEEEEccCCCcceEEEec-ccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290 347 Y-MNLKLWDIRMDSTPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR 405 (409)
Q Consensus 347 ~-~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d 405 (409)
- ..-.+||+-. +-+.+++. |....+ .+-| .+-+++|--|-. +++||.+
T Consensus 264 R~~~P~~~D~~S--~R~~V~k~D~N~~GY------~N~~--T~KS~~F~~D~~-v~tGSD~ 313 (609)
T KOG4227|consen 264 RGKCPLYFDFIS--QRCFVLKSDHNPNGY------CNIK--TIKSMTFIDDYT-VATGSDH 313 (609)
T ss_pred ccCCCEEeeeec--ccceeEeccCCCCcc------eeee--eeeeeeeeccee-eeccCcc
Confidence 3 5666788864 22333332 232111 1111 124788875544 8888876
No 185
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=9.8e-17 Score=129.51 Aligned_cols=192 Identities=16% Similarity=0.233 Sum_probs=143.9
Q ss_pred eEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccce
Q 015290 116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (409)
Q Consensus 116 v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (409)
..|+.| ++.|.+|++|+.||.|-|||+.+....+.
T Consensus 26 a~~~~F--s~~G~~lAvGc~nG~vvI~D~~T~~iar~------------------------------------------- 60 (405)
T KOG1273|consen 26 AECCQF--SRWGDYLAVGCANGRVVIYDFDTFRIARM------------------------------------------- 60 (405)
T ss_pred cceEEe--ccCcceeeeeccCCcEEEEEccccchhhh-------------------------------------------
Confidence 778999 79999999999999999999988654332
Q ss_pred eEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEE
Q 015290 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 274 (409)
Q Consensus 196 i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 274 (409)
+.+|-.+|.+++|+++|+.|+++ .|..|.+||+. .+.+++.+. ..++|+.+.
T Consensus 61 ------------------lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~-~gs~l~rir--------f~spv~~~q 113 (405)
T KOG1273|consen 61 ------------------LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLL-KGSPLKRIR--------FDSPVWGAQ 113 (405)
T ss_pred ------------------hhccccceeEEEecCCCCEeeeecCCceeEEEecc-CCCceeEEE--------ccCccceee
Confidence 26899999999999999999999 99999999999 666666543 347899999
Q ss_pred EeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEE
Q 015290 275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLW 353 (409)
Q Consensus 275 ~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iw 353 (409)
|+|...+.++..-.+..-.+-++..... ..+....++. . .....+..|.+.|+|+++|.. |.+.+|
T Consensus 114 ~hp~k~n~~va~~~~~sp~vi~~s~~~h-----~~Lp~d~d~d--l------n~sas~~~fdr~g~yIitGtsKGkllv~ 180 (405)
T KOG1273|consen 114 WHPRKRNKCVATIMEESPVVIDFSDPKH-----SVLPKDDDGD--L------NSSASHGVFDRRGKYIITGTSKGKLLVY 180 (405)
T ss_pred eccccCCeEEEEEecCCcEEEEecCCce-----eeccCCCccc--c------ccccccccccCCCCEEEEecCcceEEEE
Confidence 9998755555555554455555554321 2222201000 0 112233468999999999976 999999
Q ss_pred EccCCCcceEEEeccc-CcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 354 DIRMDSTPVATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 354 d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
|..+ .+++..++-.. ..+ ..+.++..|++|+.-+.|+.|
T Consensus 181 ~a~t-~e~vas~rits~~~I---------------K~I~~s~~g~~liiNtsDRvI 220 (405)
T KOG1273|consen 181 DAET-LECVASFRITSVQAI---------------KQIIVSRKGRFLIINTSDRVI 220 (405)
T ss_pred ecch-heeeeeeeechheee---------------eEEEEeccCcEEEEecCCceE
Confidence 9987 68887777554 332 589999999999999998865
No 186
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.75 E-value=3.1e-17 Score=136.59 Aligned_cols=211 Identities=19% Similarity=0.240 Sum_probs=146.3
Q ss_pred cceEEEEEEecCCCC-EEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccc
Q 015290 114 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (409)
.+|.++.|. +++. .|+||+.|..|++|.+..+....-
T Consensus 14 ~pv~s~dfq--~n~~~~laT~G~D~~iriW~v~r~~~~~~---------------------------------------- 51 (434)
T KOG1009|consen 14 EPVYSVDFQ--KNSLNKLATAGGDKDIRIWKVNRSEPGGG---------------------------------------- 51 (434)
T ss_pred CceEEEEec--cCcccceecccCccceeeeeeeecCCCCC----------------------------------------
Confidence 489999995 4544 999999999999999876532210
Q ss_pred cceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCC------C-----ceeeeeecCC
Q 015290 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS------D-----QCFNIVDMKP 260 (409)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~------~-----~~~~~~~~~~ 260 (409)
+..|.. ... +..|...|+++.|+|+|+.|++| ++|.|.+|-.... . +....+.
T Consensus 52 ~~~V~y-----------~s~-Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~--- 116 (434)
T KOG1009|consen 52 DMKVEY-----------LSS-LSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVK--- 116 (434)
T ss_pred ceeEEE-----------eec-ccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEE---
Confidence 001111 111 37899999999999999999999 9999999986610 1 0000000
Q ss_pred CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC
Q 015290 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (409)
Q Consensus 261 ~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 340 (409)
..+.+|...|+.++|+|++ +++++++.|+.+++||+..|++ ... +.+|...+..++|.|-++
T Consensus 117 k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l----~~~-------------~~dh~~yvqgvawDpl~q 178 (434)
T KOG1009|consen 117 KVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQL----LAI-------------LDDHEHYVQGVAWDPLNQ 178 (434)
T ss_pred EEecccccchhhhhccCCC-ceeeeeeccceEEEEEecccee----Eee-------------ccccccccceeecchhhh
Confidence 1257799999999999999 9999999999999999999875 233 345678999999999999
Q ss_pred EEEEee-cCeEEEEEccCCCcceEEEe--------cccCcccccccccCCCC---ccceeeEEEcCCCCeEEEcc
Q 015290 341 HLLSRD-YMNLKLWDIRMDSTPVATFK--------IHEHLRPKLCDLYNNDS---IFDKFECSVSGDGLHFATGS 403 (409)
Q Consensus 341 ~l~sg~-~~~v~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~---~~~v~~~~~spdg~~l~s~s 403 (409)
|+++-+ |...+.+++.. .+.+.... +++.. .....+++.+. .| +.++|+|||.+|++.+
T Consensus 179 yv~s~s~dr~~~~~~~~~-~~~~~~~~~~~m~~~~~~~~e-~~s~rLfhDeTlksFF--rRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 179 YVASKSSDRHPEGFSAKL-KQVIKRHGLDIMPAKAFNERE-GKSTRLFHDETLKSFF--RRLSFTPDGSLLVTPA 249 (434)
T ss_pred hhhhhccCcccceeeeee-eeeeeeeeeeEeeecccCCCC-cceeeeeecCchhhhh--hhcccCCCCcEEEccc
Confidence 999865 56566666543 22221111 11111 12223444433 34 7899999999998754
No 187
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=7.1e-17 Score=135.36 Aligned_cols=203 Identities=15% Similarity=0.172 Sum_probs=139.9
Q ss_pred EEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccc
Q 015290 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (409)
Q Consensus 36 ~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (409)
.+++|+.+|..||+|+.||.+|||+...... +.....|. +.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t---------------------------~l~e~~~~------------~e 188 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT---------------------------ILEEIAHH------------AE 188 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh---------------------------hhhhHhhc------------Cc
Confidence 7899999999999999999999999776542 33455666 79
Q ss_pred eEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCC--ceee-cccccc
Q 015290 116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF--AHGY-HLEWTE 192 (409)
Q Consensus 116 v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~ 192 (409)
|.++.| +|||+.|++-+.| ..+||+.+++.......- ...+..+-.|.+..+. ..+. .....+
T Consensus 189 V~DL~F--S~dgk~lasig~d-~~~VW~~~~g~~~a~~t~-----------~~k~~~~~~cRF~~d~~~~~l~laa~~~~ 254 (398)
T KOG0771|consen 189 VKDLDF--SPDGKFLASIGAD-SARVWSVNTGAALARKTP-----------FSKDEMFSSCRFSVDNAQETLRLAASQFP 254 (398)
T ss_pred ccccee--CCCCcEEEEecCC-ceEEEEeccCchhhhcCC-----------cccchhhhhceecccCCCceEEEEEecCC
Confidence 999999 8999999999999 899999998843332210 0011111122221111 1221 122223
Q ss_pred cceeEEEecCCcccceeeeeec-cccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290 193 NMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (409)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (409)
.+.++.|++........++... ..-...|++++++++|++++.| .||.|.+++.. .-+.+..+ -+.|...|
T Consensus 255 ~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~-~lq~~~~v------k~aH~~~V 327 (398)
T KOG0771|consen 255 GGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAK-SLQRLQYV------KEAHLGFV 327 (398)
T ss_pred CCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEec-eeeeeEee------hhhheeee
Confidence 4455555554322211111110 1223468999999999999999 99999999998 55555543 46799999
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEeCCC
Q 015290 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (409)
Q Consensus 271 ~~~~~~p~~~~~l~s~s~dg~i~iwd~~~ 299 (409)
+.+.|+|+. +++++.+.+.+..+.-+.-
T Consensus 328 T~ltF~Pds-r~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 328 TGLTFSPDS-RYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eeEEEcCCc-CcccccccCCceeEEEEee
Confidence 999999998 9999999999988887654
No 188
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=3.7e-16 Score=142.61 Aligned_cols=184 Identities=14% Similarity=0.172 Sum_probs=121.5
Q ss_pred cceEEEEEEecCCCCEEEEEeCC---CeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
..+.+++| +|||+.|+.++.+ ..|++||+.+++...+..
T Consensus 204 ~~v~~p~w--SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~------------------------------------ 245 (429)
T PRK01742 204 QPLMSPAW--SPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS------------------------------------ 245 (429)
T ss_pred CccccceE--cCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec------------------------------------
Confidence 68999999 8999999887654 369999988765433211
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEE--EccCCCceeeeeecCCCcCcCc
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLW--NLEISDQCFNIVDMKPSNMDDL 266 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lw--d~~~~~~~~~~~~~~~~~~~~~ 266 (409)
+ .++ ...++|+|||+.|+.+ .+|.+.|| |+. .+.. .. +..+
T Consensus 246 ----------------------~-~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~-~~~~-~~-------lt~~ 290 (429)
T PRK01742 246 ----------------------F-RGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGAN-GGTP-SQ-------LTSG 290 (429)
T ss_pred ----------------------C-CCc---cCceeECCCCCEEEEEEecCCcEEEEEEECC-CCCe-Ee-------eccC
Confidence 0 222 2357999999988875 57766665 554 3332 22 3445
Q ss_pred cCceEEEEEeCCCCCEEEEE-eCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290 267 TEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (409)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg 345 (409)
...+.+..|+|+| +.|+.. ..+|...||++...... ...+.. .. ....|+|||++|+..
T Consensus 291 ~~~~~~~~wSpDG-~~i~f~s~~~g~~~I~~~~~~~~~---~~~l~~--------------~~--~~~~~SpDG~~ia~~ 350 (429)
T PRK01742 291 AGNNTEPSWSPDG-QSILFTSDRSGSPQVYRMSASGGG---ASLVGG--------------RG--YSAQISADGKTLVMI 350 (429)
T ss_pred CCCcCCEEECCCC-CEEEEEECCCCCceEEEEECCCCC---eEEecC--------------CC--CCccCCCCCCEEEEE
Confidence 5667899999999 766554 46788888886542211 111111 12 357899999999887
Q ss_pred ecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 346 ~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
+...+.+||+.+ ++.......... ..+.|+|||++|++++.+|.+
T Consensus 351 ~~~~i~~~Dl~~-g~~~~lt~~~~~-----------------~~~~~sPdG~~i~~~s~~g~~ 395 (429)
T PRK01742 351 NGDNVVKQDLTS-GSTEVLSSTFLD-----------------ESPSISPNGIMIIYSSTQGLG 395 (429)
T ss_pred cCCCEEEEECCC-CCeEEecCCCCC-----------------CCceECCCCCEEEEEEcCCCc
Confidence 655567799975 543322222211 268899999999999888754
No 189
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.1e-15 Score=125.88 Aligned_cols=259 Identities=13% Similarity=0.107 Sum_probs=164.5
Q ss_pred CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (409)
.-.+.-++|++--..+|++..|-.|++|+-.... ...++.-..
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~----------------------------pt~Lks~sQ--------- 140 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC----------------------------PTKLKSVSQ--------- 140 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCC----------------------------Cceecchhh---------
Confidence 3467889999855567899999999999976532 223333221
Q ss_pred eccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCce-eeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
..|++++|-| -.++.|+.|+..| |.+|...... ..+...
T Consensus 141 --rnvtclawRP-lsaselavgCr~g-IciW~~s~tln~~r~~~------------------------------------ 180 (445)
T KOG2139|consen 141 --RNVTCLAWRP-LSASELAVGCRAG-ICIWSDSRTLNANRNIR------------------------------------ 180 (445)
T ss_pred --cceeEEEecc-CCcceeeeeecce-eEEEEcCcccccccccc------------------------------------
Confidence 5899999964 3445677777755 8999875321 111000
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (409)
+.+....+..+. .+| .+|++|+|++||..++++ .|..|.|||.. .+..+.. .....+
T Consensus 181 ----------~~s~~~~qvl~~--pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpd-tg~~~pL-------~~~glg 239 (445)
T KOG2139|consen 181 ----------MMSTHHLQVLQD--PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPD-TGQKIPL-------IPKGLG 239 (445)
T ss_pred ----------cccccchhheeC--CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCC-CCCcccc-------cccCCC
Confidence 000000111121 345 789999999999999987 79999999999 6665544 123346
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecC
Q 015290 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM 348 (409)
Q Consensus 269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~ 348 (409)
.++-+.|+||+ .+|.++.-|+..++|+......+ ..+.. + .+.|...+|+|+|++|+-...+
T Consensus 240 g~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~----erw~l---g----------sgrvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 240 GFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTK----ERWIL---G----------SGRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred ceeeEEEcCCC-CEEEEecccceeeeehhccccee----cceec---c----------CCceeeeeecCCCCEEEEEEcC
Confidence 78899999999 99999999999999965432211 11111 0 2479999999999998877667
Q ss_pred eEEEEEccCCCcceEEE-ecccCcccccccccC-------CCCccceeeEEEcCCCCeEEEcccCC
Q 015290 349 NLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYN-------NDSIFDKFECSVSGDGLHFATGSYRR 406 (409)
Q Consensus 349 ~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~v~~~~~spdg~~l~s~s~dg 406 (409)
.-++|.+...+++.... .+....+....++.+ .-+.-.+-+++|.|.|.+||+.-..+
T Consensus 302 sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 302 SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 77788776544332221 111111111112111 11112235899999999999764433
No 190
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=4.4e-15 Score=122.60 Aligned_cols=152 Identities=14% Similarity=0.171 Sum_probs=114.2
Q ss_pred ccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEe--CCCeEEEE
Q 015290 218 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--SRGFVRLV 295 (409)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s--~dg~i~iw 295 (409)
...|.++.++. +.|++.-...|+|||++ .-+.+++++ ..+.+...+.++++++.+ .+++.-+ ..|.|.+|
T Consensus 87 pt~IL~VrmNr--~RLvV~Lee~IyIydI~-~MklLhTI~----t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 87 PTSILAVRMNR--KRLVVCLEESIYIYDIK-DMKLLHTIE----TTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLF 158 (391)
T ss_pred CCceEEEEEcc--ceEEEEEcccEEEEecc-cceeehhhh----ccCCCccceEeeccCCCC-ceEEecCCCCCceEEEE
Confidence 34677888764 56777733349999999 666666642 233456667888888877 7888643 46899999
Q ss_pred eCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-C-eEEEEEccCCCcceEEEecccCccc
Q 015290 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M-NLKLWDIRMDSTPVATFKIHEHLRP 373 (409)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~-~v~iwd~~~~~~~~~~~~~~~~~~~ 373 (409)
|..+-+. ... +..|.+++.+++|+++|.+||++++ | .|||+.+.. |+.+..|......+
T Consensus 159 d~~nl~~----v~~-------------I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~- 219 (391)
T KOG2110|consen 159 DTINLQP----VNT-------------INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPV- 219 (391)
T ss_pred Eccccee----eeE-------------EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeeeeCCceee-
Confidence 9877432 122 3456899999999999999999998 5 579999975 88888887655543
Q ss_pred ccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 374 ~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
.|.+++|+||+++|++.|..++|
T Consensus 220 ------------~IySL~Fs~ds~~L~~sS~TeTV 242 (391)
T KOG2110|consen 220 ------------SIYSLSFSPDSQFLAASSNTETV 242 (391)
T ss_pred ------------EEEEEEECCCCCeEEEecCCCeE
Confidence 23699999999999999988876
No 191
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.72 E-value=4.6e-15 Score=139.86 Aligned_cols=290 Identities=13% Similarity=0.097 Sum_probs=175.2
Q ss_pred cccceeeehhccCCCCCccccCCCcEEEEEECCCC-CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCC
Q 015290 10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSH 88 (409)
Q Consensus 10 ~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (409)
++..|+....+-. ....|...|..++.++.. .++++||.||+|++|+....... +
T Consensus 1030 p~~gW~p~G~lVA----hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~-------------~------- 1085 (1431)
T KOG1240|consen 1030 PPPGWNPRGILVA----HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE-------------G------- 1085 (1431)
T ss_pred CCCCCCccceEee----hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC-------------c-------
Confidence 4445777665432 344588899999988755 99999999999999998754320 0
Q ss_pred CceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccc
Q 015290 89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 168 (409)
Q Consensus 89 ~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (409)
..++...++.--. .++.++..+ +.++.+|.++.||.|++.+++........... .-.....
T Consensus 1086 ~s~rS~ltys~~~------------sr~~~vt~~--~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~-----~ri~n~~ 1146 (1431)
T KOG1240|consen 1086 GSARSELTYSPEG------------SRVEKVTMC--GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQ-----VRIPNLK 1146 (1431)
T ss_pred ceeeeeEEEeccC------------CceEEEEec--cCCCeEEEEcCCCeEEEEEccccccccceeee-----eeccccc
Confidence 0112222222112 688889886 68889999999999999998763211111000 0001112
Q ss_pred cccCceeccCC--CCCc-eeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEE
Q 015290 169 AEKNFMNEHNP--PSFA-HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW 244 (409)
Q Consensus 169 ~~~~~~~~~~~--~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lw 244 (409)
..+.++++... .... .+..+.. .+.+..||+........++. ....+.|++++.+|.+.++++| ..|.+.+|
T Consensus 1147 ~~g~vv~m~a~~~~~~S~~lvy~T~--~~~iv~~D~r~~~~~w~lk~--~~~hG~vTSi~idp~~~WlviGts~G~l~lW 1222 (1431)
T KOG1240|consen 1147 KDGVVVSMHAFTAIVQSHVLVYATD--LSRIVSWDTRMRHDAWRLKN--QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLW 1222 (1431)
T ss_pred CCCceEEeecccccccceeEEEEEe--ccceEEecchhhhhHHhhhc--CccccceeEEEecCCceEEEEecCCceEEEE
Confidence 23334443321 1122 3333332 66889999987665555553 3345789999999999999999 99999999
Q ss_pred EccCCCceeeeeecCCCcCcCccCceEEEEEeCCCC--CEEEEEe--CCCeEEEEeCCCccccccccccccccccccCCc
Q 015290 245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC--NLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSK 320 (409)
Q Consensus 245 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 320 (409)
|++ -+..+..+ -.++..+++.+..+|-.+ ...++++ ..+.|.+|++.++. +.. .+......+...
T Consensus 1223 DLR-F~~~i~sw------~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~-~~~---vl~~s~~~p~ls 1291 (1431)
T KOG1240|consen 1223 DLR-FRVPILSW------EHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL-RQT---VLWASDGAPILS 1291 (1431)
T ss_pred Eee-cCceeecc------cCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc-ceE---EEEcCCCCcchh
Confidence 999 55566554 233457788888777653 4555444 47889999999873 321 111100111110
Q ss_pred cc------ccccccceeeeEeccCCCEEEEe-ecCeEEEEEccC
Q 015290 321 SF------FTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRM 357 (409)
Q Consensus 321 ~~------~~~~~~~i~~~~~s~~g~~l~sg-~~~~v~iwd~~~ 357 (409)
.. -+.+.-......+...+.++.+| +|..|+.||...
T Consensus 1292 ~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1292 YALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred hhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 00 01122223333444444566666 579999999864
No 192
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4.3e-15 Score=129.39 Aligned_cols=284 Identities=15% Similarity=0.195 Sum_probs=187.7
Q ss_pred CccccCCCcEEEEEECCCCCEE-EEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc
Q 015290 26 DEELQDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (409)
Q Consensus 26 ~~~~~h~~~v~~v~~~~~~~~l-a~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (409)
+..+.+...-+.|..+|||+|+ |+|...-.|++||+.+..+ .|.-|..
T Consensus 45 iQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-----------------------------KFERhlD-- 93 (703)
T KOG2321|consen 45 IQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-----------------------------KFERHLD-- 93 (703)
T ss_pred HHhcCCccccceeEecCCCcEEEEecccCCceEEEEccccee-----------------------------eeeeccc--
Confidence 3445588899999999999986 6777888999999987653 2444431
Q ss_pred cccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (409)
Q Consensus 105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (409)
..+..+... +.|-..++.-..|++|.+..-.+........ . .......+...+-
T Consensus 94 ---------ae~V~feiL-sDD~SK~v~L~~DR~IefHak~G~hy~~RIP--------------~--~GRDm~y~~~scD 147 (703)
T KOG2321|consen 94 ---------AEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKYGRHYRTRIP--------------K--FGRDMKYHKPSCD 147 (703)
T ss_pred ---------ccceeEEEe-ccchhhheEeecCceeeehhhcCeeeeeecC--------------c--CCccccccCCCcc
Confidence 344444443 4555566666778888765443322211100 0 0011111111222
Q ss_pred eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (409)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (409)
++.++. ...|.-.+++.+. -+.-| ....+.++++..++-..+|++| .+|.|..||.+ .+....+++.... .
T Consensus 148 ly~~gs--g~evYRlNLEqGr---fL~P~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR-~ksrv~~l~~~~~-v 219 (703)
T KOG2321|consen 148 LYLVGS--GSEVYRLNLEQGR---FLNPF-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR-DKSRVGTLDAASS-V 219 (703)
T ss_pred EEEeec--CcceEEEEccccc---ccccc-ccccccceeeeecCccceEEecccCceEEEecch-hhhhheeeecccc-c
Confidence 222221 3356666665532 22222 3455789999999999999999 89999999999 6665655554422 2
Q ss_pred cCccC-----ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccC
Q 015290 264 DDLTE-----VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (409)
Q Consensus 264 ~~~~~-----~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 338 (409)
..|.+ .|+++.|+.+| -.++.|..+|.+.|||++..++. ....| +..-+|..+.|-+.
T Consensus 220 ~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl-----~~kdh-----------~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 220 NSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPL-----LVKDH-----------GYELPIKKLDWQDT 282 (703)
T ss_pred CCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCce-----eeccc-----------CCccceeeeccccc
Confidence 33333 49999999998 99999999999999999997642 22221 11347889999775
Q ss_pred --CCEEEEeecCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 339 --GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 339 --g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
+..|++.....++|||-.+ |++...+...... ..+|+-|++.+++++-+++.+
T Consensus 283 ~~q~~v~S~Dk~~~kiWd~~~-Gk~~asiEpt~~l----------------ND~C~~p~sGm~f~Ane~~~m 337 (703)
T KOG2321|consen 283 DQQNKVVSMDKRILKIWDECT-GKPMASIEPTSDL----------------NDFCFVPGSGMFFTANESSKM 337 (703)
T ss_pred CCCceEEecchHHhhhccccc-CCceeeccccCCc----------------CceeeecCCceEEEecCCCcc
Confidence 4566666669999999886 8888777655543 489999999999998877654
No 193
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.71 E-value=2.4e-14 Score=131.74 Aligned_cols=239 Identities=26% Similarity=0.434 Sum_probs=174.6
Q ss_pred cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (409)
...|...|.++.|.+.+..++.++.|+.+.+|+...... .+..+.++..
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------------------------~~~~~~~~~~----- 109 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK--------------------------LIKSLEGLHD----- 109 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce--------------------------eEEEEeccCC-----
Confidence 345899999999999999999999999999999887641 2344444330
Q ss_pred ccceeccceEEEEEEecCCCC-EEEEEeC-CCeEEEEEcCC-ceeeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290 108 KSLEIEEKINRVRWCAAPNGS-MFILSTN-DKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (409)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~-~l~s~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (409)
..+..+.+. ++++. .++..+. |+.+++|+... ......
T Consensus 110 ------~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-------------------------------- 150 (466)
T COG2319 110 ------SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRT-------------------------------- 150 (466)
T ss_pred ------CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEE--------------------------------
Confidence 256777774 46776 4555444 99999999986 222111
Q ss_pred eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-c-CCeEEEEEccCCCceeeeeecCCCc
Q 015290 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSN 262 (409)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~-d~~i~lwd~~~~~~~~~~~~~~~~~ 262 (409)
+..|...|..++|+|+++.++++ . |+.+++|+.. ....+..
T Consensus 151 -----------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------- 193 (466)
T COG2319 151 -----------------------------LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR-TGKPLST------- 193 (466)
T ss_pred -----------------------------EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcC-CCceEEe-------
Confidence 15788889999999999988887 5 9999999998 4455554
Q ss_pred CcCccCceEEEEEeCCCCC-EEEEEeCCCeEEEEeCCCccccccccc-cccccccccCCcccccccccceeeeEeccCCC
Q 015290 263 MDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSAR-ILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (409)
Q Consensus 263 ~~~~~~~v~~~~~~p~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 340 (409)
+.+|...+.+++|+|++ . ++++++.|+.|++||...+... . .+.. |.... -..|+|++.
T Consensus 194 ~~~~~~~v~~~~~~~~~-~~~~~~~~~d~~i~~wd~~~~~~~----~~~~~~-------------~~~~~-~~~~~~~~~ 254 (466)
T COG2319 194 LAGHTDPVSSLAFSPDG-GLLIASGSSDGTIRLWDLSTGKLL----RSTLSG-------------HSDSV-VSSFSPDGS 254 (466)
T ss_pred eccCCCceEEEEEcCCc-ceEEEEecCCCcEEEEECCCCcEE----eeecCC-------------CCcce-eEeECCCCC
Confidence 56689999999999998 6 5666699999999988754431 2 2222 23333 228999998
Q ss_pred EEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290 341 HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD 407 (409)
Q Consensus 341 ~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~ 407 (409)
++++++ ++.+++|++......+..+.+|...+ .++.|+|++..+++++.|+.
T Consensus 255 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~~~~~~d~~ 307 (466)
T COG2319 255 LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV---------------LSVAFSPDGKLLASGSSDGT 307 (466)
T ss_pred EEEEecCCCcEEEeeecCCCcEEEEEecCCccE---------------EEEEECCCCCEEEEeeCCCc
Confidence 888776 49999999985333244444554443 58899999999988888854
No 194
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=2.4e-15 Score=139.64 Aligned_cols=263 Identities=15% Similarity=0.180 Sum_probs=172.8
Q ss_pred CCcEEEEEECC--CCCEEEEEecCCeEEEEeccCCc-CCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290 32 VDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGK-NTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (409)
Q Consensus 32 ~~~v~~v~~~~--~~~~la~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (409)
...|+.+.+-. |..++++|+.||.|+||+-.... . ..++++.+.+-+.. +.
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~-----------------------~~eLVTaw~~Ls~~---~~ 1162 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK-----------------------KPELVTAWSSLSDQ---LP 1162 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccC-----------------------CceeEEeecccccc---Cc
Confidence 46899999876 56789999999999999743221 1 12234433322200 00
Q ss_pred cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (409)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (409)
.-. +.=.-+.| .....+|++++.-+.|+|||.................+.+++-.... +.+++.|
T Consensus 1163 ~~r--~~~~v~dW--qQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~-----------gn~i~AG 1227 (1387)
T KOG1517|consen 1163 GAR--GTGLVVDW--QQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH-----------GNIIAAG 1227 (1387)
T ss_pred cCC--CCCeeeeh--hhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC-----------CceEEEe
Confidence 000 11134578 45555777777689999999988776655544433333333322222 2333333
Q ss_pred cccccceeEEEecCCcccceeeeeeccccccc--eeEEEeCCCCC-eEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFN--INSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (409)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--v~~l~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~ 264 (409)
-. ||.+++||.........+..+ +.|... |..+.+.+.|- .|++| .+|.|++||++.. .....+. ..
T Consensus 1228 fa--DGsvRvyD~R~a~~ds~v~~~-R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~-~~e~~~~-----iv 1298 (1387)
T KOG1517|consen 1228 FA--DGSVRVYDRRMAPPDSLVCVY-REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS-SKETFLT-----IV 1298 (1387)
T ss_pred ec--CCceEEeecccCCccccceee-cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC-cccccce-----ee
Confidence 33 999999999987776677776 788887 99999988764 48899 9999999999942 2222211 12
Q ss_pred Cc---cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCE
Q 015290 265 DL---TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (409)
Q Consensus 265 ~~---~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 341 (409)
.| .+..+++..+++. .++|+|+. +.|+||++...++ ..+..+ ..++....+.+.+++|+|---+
T Consensus 1299 ~~~~yGs~lTal~VH~ha-piiAsGs~-q~ikIy~~~G~~l-----~~~k~n------~~F~~q~~gs~scL~FHP~~~l 1365 (1387)
T KOG1517|consen 1299 AHWEYGSALTALTVHEHA-PIIASGSA-QLIKIYSLSGEQL-----NIIKYN------PGFMGQRIGSVSCLAFHPHRLL 1365 (1387)
T ss_pred eccccCccceeeeeccCC-CeeeecCc-ceEEEEecChhhh-----cccccC------cccccCcCCCcceeeecchhHh
Confidence 22 2258999999998 99999998 9999999987653 222221 1111222456799999999888
Q ss_pred EEEee-cCeEEEEEccC
Q 015290 342 LLSRD-YMNLKLWDIRM 357 (409)
Q Consensus 342 l~sg~-~~~v~iwd~~~ 357 (409)
+|+|+ |..|.||....
T Consensus 1366 lAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1366 LAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred hhhccCCceEEEeecCC
Confidence 88887 49999998764
No 195
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=9.1e-15 Score=133.14 Aligned_cols=215 Identities=12% Similarity=0.105 Sum_probs=139.5
Q ss_pred cCCCcEEEEEECCCCCEEEEEec---CCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290 30 QDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (409)
Q Consensus 30 ~h~~~v~~v~~~~~~~~la~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (409)
.+...+.+.+|+|||+.||..+. +..|.+|++.+++. +.+..+.+
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-------------------------~~l~~~~~------- 243 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-------------------------RQVASFPR------- 243 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-------------------------EEccCCCC-------
Confidence 35668999999999999987642 34788999887652 12222333
Q ss_pred cccceeccceEEEEEEecCCCCEEEEE-eCCC--eEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc
Q 015290 107 LKSLEIEEKINRVRWCAAPNGSMFILS-TNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (409)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (409)
.+..+.| +|||+.|+.. +.++ .|.+||+.+++....
T Consensus 244 --------~~~~~~~--SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l------------------------------- 282 (429)
T PRK03629 244 --------HNGAPAF--SPDGSKLAFALSKTGSLNLYVMDLASGQIRQV------------------------------- 282 (429)
T ss_pred --------CcCCeEE--CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-------------------------------
Confidence 3345789 8999988865 4444 578888877654332
Q ss_pred eeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEE--EccCCCceeeeeecC
Q 015290 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLW--NLEISDQCFNIVDMK 259 (409)
Q Consensus 184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lw--d~~~~~~~~~~~~~~ 259 (409)
..+...+....|+|+|+.|+.. .++...|| |+. .+.. ..
T Consensus 283 -------------------------------t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~-~g~~-~~---- 325 (429)
T PRK03629 283 -------------------------------TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN-GGAP-QR---- 325 (429)
T ss_pred -------------------------------cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC-CCCe-EE----
Confidence 1222345678999999988765 44555555 554 3332 22
Q ss_pred CCcCcCccCceEEEEEeCCCCCEEEEEeCC---CeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEec
Q 015290 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (409)
Q Consensus 260 ~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 336 (409)
+...........|+|+| ++|+..+.+ ..|.+||+.+++. ..+.. ........|+
T Consensus 326 ---lt~~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~~-----~~Lt~--------------~~~~~~p~~S 382 (429)
T PRK03629 326 ---ITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGV-----QVLTD--------------TFLDETPSIA 382 (429)
T ss_pred ---eecCCCCccCEEECCCC-CEEEEEEccCCCceEEEEECCCCCe-----EEeCC--------------CCCCCCceEC
Confidence 12223345678999999 877765543 3588899887653 22222 1123467899
Q ss_pred cCCCEEEEee-c---CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcC
Q 015290 337 NDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 394 (409)
Q Consensus 337 ~~g~~l~sg~-~---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 394 (409)
|||++|+.++ + ..+.++++. +.....+.+|...+ ...+|+|
T Consensus 383 pDG~~i~~~s~~~~~~~l~~~~~~--G~~~~~l~~~~~~~---------------~~p~Wsp 427 (429)
T PRK03629 383 PNGTMVIYSSSQGMGSVLNLVSTD--GRFKARLPATDGQV---------------KFPAWSP 427 (429)
T ss_pred CCCCEEEEEEcCCCceEEEEEECC--CCCeEECccCCCCc---------------CCcccCC
Confidence 9999998775 3 347788875 77777777766654 4788887
No 196
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.70 E-value=6e-16 Score=136.99 Aligned_cols=239 Identities=13% Similarity=0.089 Sum_probs=174.8
Q ss_pred cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (409)
..+|++.|.|++|+.||+.+|+|+.|..|.+|..+-... ---.|.
T Consensus 49 LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-----------------------------LkYSH~------ 93 (1081)
T KOG1538|consen 49 LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-----------------------------LKYSHN------ 93 (1081)
T ss_pred cccccceEEEEEEccCCceeccCCCceeEEEecccccce-----------------------------eeeccC------
Confidence 344999999999999999999999999999998653221 013455
Q ss_pred ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (409)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
+.|.|+.| +|-.+.|++|+... .-+|........+. .....+..|.|..++++++.
T Consensus 94 ------D~IQCMsF--NP~~h~LasCsLsd-FglWS~~qK~V~K~---------------kss~R~~~CsWtnDGqylal 149 (1081)
T KOG1538|consen 94 ------DAIQCMSF--NPITHQLASCSLSD-FGLWSPEQKSVSKH---------------KSSSRIICCSWTNDGQYLAL 149 (1081)
T ss_pred ------CeeeEeec--CchHHHhhhcchhh-ccccChhhhhHHhh---------------hhheeEEEeeecCCCcEEEE
Confidence 89999999 68888999987643 66887765543322 23345677888899999998
Q ss_pred ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-----CeEEEe-cCCeEEEEEccCCCceeeeeecCCC
Q 015290 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-----ETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (409)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-----~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~ 261 (409)
|-+ +|+|.+.+..........+ . .+...+|.+++|+|.. ..++.. ...++.+|.+. ++.+..
T Consensus 150 G~~--nGTIsiRNk~gEek~~I~R-p-gg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls--G~~Igk------ 217 (1081)
T KOG1538|consen 150 GMF--NGTISIRNKNGEEKVKIER-P-GGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS--GKQIGK------ 217 (1081)
T ss_pred ecc--CceEEeecCCCCcceEEeC-C-CCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec--ceeecc------
Confidence 887 8888888655433222222 2 5678899999999862 466667 78888888887 444321
Q ss_pred cCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCE
Q 015290 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (409)
Q Consensus 262 ~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 341 (409)
-....-...++++.|+| .+++.|+.|+.+++|-...-.+ .++ ...+.+|+.++..|++++
T Consensus 218 -~r~L~FdP~CisYf~NG-Ey~LiGGsdk~L~~fTR~GvrL-----GTv-------------g~~D~WIWtV~~~PNsQ~ 277 (1081)
T KOG1538|consen 218 -DRALNFDPCCISYFTNG-EYILLGGSDKQLSLFTRDGVRL-----GTV-------------GEQDSWIWTVQAKPNSQY 277 (1081)
T ss_pred -cccCCCCchhheeccCC-cEEEEccCCCceEEEeecCeEE-----eec-------------cccceeEEEEEEccCCce
Confidence 12223345789999999 9999999999999996543211 111 112569999999999999
Q ss_pred EEEee-cCeEEEEEccC
Q 015290 342 LLSRD-YMNLKLWDIRM 357 (409)
Q Consensus 342 l~sg~-~~~v~iwd~~~ 357 (409)
++.|. ||+|..|++-.
T Consensus 278 v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 278 VVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEEEEccCeeehhhhHH
Confidence 99997 59999998753
No 197
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=4.5e-14 Score=114.51 Aligned_cols=140 Identities=15% Similarity=0.169 Sum_probs=97.4
Q ss_pred cceeEEEecCCcccce-eeeeeccccccceeEEEeCCCCCeEEE-e-cCCeEEEEEccCCCce-eeeeecCCCcCcCccC
Q 015290 193 NMATKIANVGNSVHAR-CQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTE 268 (409)
Q Consensus 193 ~~~i~~~~~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~ 268 (409)
.+.|.+|......... ++.+ ........++.-+.+...||. | .-|.|.|-|+...... -.. +..|.+
T Consensus 112 ~~~I~VytF~~n~k~l~~~et--~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~-------I~AH~s 182 (346)
T KOG2111|consen 112 ENKIYVYTFPDNPKLLHVIET--RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSI-------INAHDS 182 (346)
T ss_pred cCeEEEEEcCCChhheeeeec--ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceE-------EEcccC
Confidence 4567788776432211 1111 122233444443334445554 6 7899999999843331 122 688999
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCe-EEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290 269 VITSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (409)
Q Consensus 269 ~v~~~~~~p~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~ 347 (409)
.|.+++.+-+| .++||+|..|+ |||||..++... ..++. . ...+.|.+++|||++.+||+++|
T Consensus 183 ~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l----~E~RR-G----------~d~A~iy~iaFSp~~s~LavsSd 246 (346)
T KOG2111|consen 183 DIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLL----QELRR-G----------VDRADIYCIAFSPNSSWLAVSSD 246 (346)
T ss_pred ceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEe----eeeec-C----------CchheEEEEEeCCCccEEEEEcC
Confidence 99999999999 99999999997 899999998752 33333 0 11358999999999999999999
Q ss_pred -CeEEEEEccC
Q 015290 348 -MNLKLWDIRM 357 (409)
Q Consensus 348 -~~v~iwd~~~ 357 (409)
|+|.|+.++.
T Consensus 247 KgTlHiF~l~~ 257 (346)
T KOG2111|consen 247 KGTLHIFSLRD 257 (346)
T ss_pred CCeEEEEEeec
Confidence 9999999873
No 198
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.6e-14 Score=131.92 Aligned_cols=268 Identities=12% Similarity=0.172 Sum_probs=159.1
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (409)
Q Consensus 29 ~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (409)
..|.-.+++.++||+++++|+|..||.|.+|.--..+. .-...+.+.-|.
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-----------------------~~~t~t~lHWH~------- 251 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-----------------------DSETCTLLHWHH------- 251 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEecccccc-----------------------ccccceEEEecc-------
Confidence 44777899999999999999999999999997443110 011345677887
Q ss_pred cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (409)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (409)
..|.+++| +++|.+|++|+..+.+-+|.+.+++.+....+. +.+..+..++++......
T Consensus 252 -----~~V~~L~f--S~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLg--------------s~I~~i~vS~ds~~~sl~ 310 (792)
T KOG1963|consen 252 -----DEVNSLSF--SSDGAYLLSGGREGVLVLWQLETGKKQFLPRLG--------------SPILHIVVSPDSDLYSLV 310 (792)
T ss_pred -----cccceeEE--ecCCceEeecccceEEEEEeecCCCcccccccC--------------CeeEEEEEcCCCCeEEEE
Confidence 79999999 899999999999999999999998844332221 122222222222222111
Q ss_pred cccccceeEEEecCCcccceeeeee-------ccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecC-
Q 015290 189 EWTENMATKIANVGNSVHARCQKVY-------PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK- 259 (409)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~- 259 (409)
- .|+.|.+-.+.+......+..+ -...++-.+.++++|.-+.++-. ..|.|.+||+.+.. .+..+.+-
T Consensus 311 ~--~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~-~i~~~~v~~ 387 (792)
T KOG1963|consen 311 L--EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDS-TIYKLQVCD 387 (792)
T ss_pred e--cCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccc-eeeeEEEEe
Confidence 1 1555555544321111111111 01123444556666643333333 56666666654211 11110000
Q ss_pred ------------------------------------------------------------CCcCcCccCceEEEEEeC-C
Q 015290 260 ------------------------------------------------------------PSNMDDLTEVITSAEFHP-I 278 (409)
Q Consensus 260 ------------------------------------------------------------~~~~~~~~~~v~~~~~~p-~ 278 (409)
..-...|...+...++.+ .
T Consensus 388 ~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~ 467 (792)
T KOG1963|consen 388 ENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPT 467 (792)
T ss_pred ecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCc
Confidence 000123554444444443 2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccC
Q 015290 279 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM 357 (409)
Q Consensus 279 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~ 357 (409)
....+++++.||.+++|-+...+........|.++..+ . -|..++++++|+.||..|+.+-++.|.+||..+
T Consensus 468 rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~-----s--y~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 468 RSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIG-----S--YHKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred ccceeEEeccCCeEEEEEEecccccCcCccceEEeeee-----c--cccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 21378899999999999885543222222333332111 1 256789999999999999999999999999975
No 199
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.68 E-value=3.1e-14 Score=129.43 Aligned_cols=251 Identities=12% Similarity=0.093 Sum_probs=155.3
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCC--Cceeeccccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS--FAHGYHLEWT 191 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 191 (409)
..|.++.|+| -+..+++.|..+|.|-+||+..+....... .+.........+..+.+..+ ..-+++++.
T Consensus 243 s~v~~~~f~p-~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-------ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss- 313 (555)
T KOG1587|consen 243 SEVTCLKFCP-FDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-------LSALEVSHSEPVTAVVWLQNEHNTEFFSLSS- 313 (555)
T ss_pred CceeEEEecc-CCcceEEeeccCceEEEEEccCCCCCCCcc-------cccccccCCcCeEEEEEeccCCCCceEEEec-
Confidence 5899999986 566788999999999999998765432110 11111112222233332211 122333333
Q ss_pred ccceeEEEecCCcccce---eeeeec-----cccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCC-
Q 015290 192 ENMATKIANVGNSVHAR---CQKVYP-----HAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKP- 260 (409)
Q Consensus 192 ~~~~i~~~~~~~~~~~~---~~~~~~-----~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~- 260 (409)
||.|..|+++...... +..... ......+++++|.+. -..++.| .+|.|.--+......... ...+.
T Consensus 314 -DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~-~~~~~~ 391 (555)
T KOG1587|consen 314 -DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE-VSYKGH 391 (555)
T ss_pred -CCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc-cccccc
Confidence 9999999887533211 111110 122345788999875 4567778 999887633221111110 00111
Q ss_pred CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCC-CccccccccccccccccccCCcccccccccceeeeEeccCC
Q 015290 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (409)
Q Consensus 261 ~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 339 (409)
..+..|.+.|+++.++|-+++.|++++ |.+++||... ...+ +-.+.. +...+++++|||.-
T Consensus 392 ~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~P----l~~~~~-------------~~~~v~~vaWSptr 453 (555)
T KOG1587|consen 392 STFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASP----LLSLDS-------------SPDYVTDVAWSPTR 453 (555)
T ss_pred ccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCc----chhhhh-------------ccceeeeeEEcCcC
Confidence 135678899999999999967777776 9999999876 3221 122222 24569999999986
Q ss_pred C-EEEEee-cCeEEEEEccCC-CcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 340 Q-HLLSRD-YMNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 340 ~-~l~sg~-~~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
. .++++. +|.|.+||+... ..++...+.+.... ..+.|+++|+.|++|...|++
T Consensus 454 pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l---------------~~~~~s~~g~~lavGd~~G~~ 510 (555)
T KOG1587|consen 454 PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPAL---------------TRVRWSPNGKLLAVGDANGTT 510 (555)
T ss_pred ceEEEEEcCCCceehhhhhccccCCccccccccccc---------------ceeecCCCCcEEEEecCCCcE
Confidence 4 555665 499999999742 24455554443332 589999999999999999964
No 200
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.68 E-value=3.5e-13 Score=123.95 Aligned_cols=279 Identities=19% Similarity=0.328 Sum_probs=189.2
Q ss_pred cccCCCcEEEEEECCCCCEEEEEec-CCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290 28 ELQDVDIVSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~~~~~la~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (409)
...|...|.+++|+|+++++++++. |+.+++|+..... .+..+.+|.
T Consensus 151 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~----- 198 (466)
T COG2319 151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK---------------------------PLSTLAGHT----- 198 (466)
T ss_pred EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc---------------------------eEEeeccCC-----
Confidence 3448899999999999999998885 9999999998744 355677788
Q ss_pred cccceeccceEEEEEEecCCCC-EEEEEeCCCeEEEEEcCCceeee-eeccCCCcccccccccccccCceeccCCCCCce
Q 015290 107 LKSLEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKK-IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (409)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (409)
..|.+++| +|++. .+++++.|+.|++||...+.... ....+... . +. .+.+.+.+
T Consensus 199 -------~~v~~~~~--~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~------------~-~~-~~~~~~~~ 255 (466)
T COG2319 199 -------DPVSSLAF--SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS------------V-VS-SFSPDGSL 255 (466)
T ss_pred -------CceEEEEE--cCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc------------e-eE-eECCCCCE
Confidence 89999999 57887 55555999999999887555544 22211111 0 11 22333333
Q ss_pred eecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (409)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (409)
+.. ...++.+++|++..... ....+ ..|...+.++.|+|++..++++ .|+.+.+|+.. ......... .
T Consensus 256 ~~~--~~~d~~~~~~~~~~~~~--~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~-----~ 324 (466)
T COG2319 256 LAS--GSSDGTIRLWDLRSSSS--LLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE-TGKLLSSLT-----L 324 (466)
T ss_pred EEE--ecCCCcEEEeeecCCCc--EEEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcC-CCceEEEee-----e
Confidence 332 23488999999986544 23333 5788999999999988888888 77889999888 444333321 2
Q ss_pred cCccCceEEEEEeCCCCCEEEEE-eCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEE
Q 015290 264 DDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (409)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 342 (409)
..|...+..+.|.+++ ..++.+ ..|+.+.+|+...... ...... ...+..+.+++ ...+
T Consensus 325 ~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~----~~~~~~--------------~~~~~~~~~~~-~~~~ 384 (466)
T COG2319 325 KGHEGPVSSLSFSPDG-SLLVSGGSDDGTIRLWDLRTGKP----LKTLEG--------------HSNVLSVSFSP-DGRV 384 (466)
T ss_pred cccCCceEEEEECCCC-CEEEEeecCCCcEEeeecCCCce----eEEecC--------------CceEEEEEECC-CCCE
Confidence 3566678999994332 344444 6889999999887541 111111 11278888888 5444
Q ss_pred EE-ee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 343 LS-RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 343 ~s-g~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
.. +. ++.+.+|+... .........+...+ ....+++++..+++++.++++
T Consensus 385 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~ 436 (466)
T COG2319 385 VSSGSTDGTVRLWDLST-GSLLRNLDGHTSRV---------------TSLDFSPDGKSLASGSSDNTI 436 (466)
T ss_pred EEEecCCCceEEEeccc-CeeeeeccCCCCcE---------------EEEEECCCCcEEEEecCCCcE
Confidence 44 44 49999999985 44444444432221 588999999999887777654
No 201
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.67 E-value=2.2e-13 Score=120.62 Aligned_cols=260 Identities=9% Similarity=0.121 Sum_probs=152.9
Q ss_pred ccCCCcEEEEEECCCCCEEEEEe-cCCeEEEEeccC-CcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290 29 LQDVDIVSAIEFDKTGDYLAVGD-RGGRVILFETVG-GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (409)
Q Consensus 29 ~~h~~~v~~v~~~~~~~~la~~~-~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (409)
+.+.+....++++|++++|++++ .++.|.+|+++. +.. ....... ..
T Consensus 31 ~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-------------------------~~~~~~~-~~----- 79 (330)
T PRK11028 31 VDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-------------------------TFAAESP-LP----- 79 (330)
T ss_pred EecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-------------------------EEeeeec-CC-----
Confidence 33446678899999999987764 578899999873 221 0111111 11
Q ss_pred cccceeccceEEEEEEecCCCCEEEEEe-CCCeEEEEEcCCce-eeeeeccCCCcccccccccccccCceeccCCCCCce
Q 015290 107 LKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (409)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (409)
+....+.| +|++++|++++ .++.|.+|++.+.. ....... .........+..++++.+
T Consensus 80 -------~~p~~i~~--~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~-----------~~~~~~~~~~~~~p~g~~ 139 (330)
T PRK11028 80 -------GSPTHIST--DHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI-----------IEGLEGCHSANIDPDNRT 139 (330)
T ss_pred -------CCceEEEE--CCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee-----------ccCCCcccEeEeCCCCCE
Confidence 34567889 79999888875 48899999996432 1111100 000011122223445555
Q ss_pred eecccccccceeEEEecCCccccee--eeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCC-Cc--eeeeee
Q 015290 185 GYHLEWTENMATKIANVGNSVHARC--QKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEIS-DQ--CFNIVD 257 (409)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~-~~--~~~~~~ 257 (409)
++.... .++.|.+||++....... ..............++|+|++++++++ .++.|.+|++... +. .+..+.
T Consensus 140 l~v~~~-~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~ 218 (330)
T PRK11028 140 LWVPCL-KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD 218 (330)
T ss_pred EEEeeC-CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence 443322 367899999975221111 000001122346789999999999887 4999999999732 22 222221
Q ss_pred cCCCcCcCccCceEEEEEeCCCCCEEEEEe-CCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEec
Q 015290 258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (409)
Q Consensus 258 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 336 (409)
.-+.... +......+.++|++ ++++++. .++.|.+|++............... ......+.++
T Consensus 219 ~~p~~~~-~~~~~~~i~~~pdg-~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--------------~~~p~~~~~~ 282 (330)
T PRK11028 219 MMPADFS-DTRWAADIHITPDG-RHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--------------ETQPRGFNID 282 (330)
T ss_pred cCCCcCC-CCccceeEEECCCC-CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--------------cccCCceEEC
Confidence 1111111 12234568999999 8777775 4789999998653211111111111 1235678999
Q ss_pred cCCCEEEEee--cCeEEEEEcc
Q 015290 337 NDGQHLLSRD--YMNLKLWDIR 356 (409)
Q Consensus 337 ~~g~~l~sg~--~~~v~iwd~~ 356 (409)
|||++|+++. +++|.+|+++
T Consensus 283 ~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 283 HSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCCEEEEEEccCCcEEEEEEc
Confidence 9999999875 3999999885
No 202
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=4.7e-15 Score=121.18 Aligned_cols=258 Identities=8% Similarity=0.042 Sum_probs=157.4
Q ss_pred ccCCCcEEEEEECC--CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290 29 LQDVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (409)
Q Consensus 29 ~~h~~~v~~v~~~~--~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (409)
..+...++.+.|.. ....+.+|+.||+|++||+...... ....+.+|..
T Consensus 67 k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-------------------------a~~~~~~~~~---- 117 (376)
T KOG1188|consen 67 KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-------------------------ARISWTQQSG---- 117 (376)
T ss_pred cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-------------------------hheeccCCCC----
Confidence 34677788888877 4567899999999999999876541 1223334431
Q ss_pred cccceeccceEEEEEEecCCCCEEEEE----eCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCC
Q 015290 107 LKSLEIEEKINRVRWCAAPNGSMFILS----TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (409)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (409)
.+-.+++- +-.++.++++ ..|..+.+||++..+.
T Consensus 118 -------~~f~~ld~--nck~~ii~~GtE~~~s~A~v~lwDvR~~qq--------------------------------- 155 (376)
T KOG1188|consen 118 -------TPFICLDL--NCKKNIIACGTELTRSDASVVLWDVRSEQQ--------------------------------- 155 (376)
T ss_pred -------CcceEeec--cCcCCeEEeccccccCceEEEEEEeccccc---------------------------------
Confidence 34555555 3455566665 2456677777765432
Q ss_pred ceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCC
Q 015290 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKP 260 (409)
Q Consensus 183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~ 260 (409)
.++.+...|.+.|+++.|+|+ .+.|++| .||-|.+||+....+.-..
T Consensus 156 --------------------------~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL----- 204 (376)
T KOG1188|consen 156 --------------------------LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDAL----- 204 (376)
T ss_pred --------------------------hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhH-----
Confidence 123334789999999999996 4788899 9999999999843221111
Q ss_pred CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccc-cCCcccccccccceeeeEeccCC
Q 015290 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES-HGSKSFFTEIIASISDIKFANDG 339 (409)
Q Consensus 261 ~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~g 339 (409)
...-.|...|..+.|...+-+.+.+-+..+...+|++..+... ..++. +.- ..... -......+...-...++
T Consensus 205 ~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~----~~~~~-~~~~~~d~r-~~~~~dY~I~~~~~~~~ 278 (376)
T KOG1188|consen 205 LHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE----TWLEN-PDVSADDLR-KEDNCDYVINEHSPGDK 278 (376)
T ss_pred HHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh----hcccC-ccchhhhHH-hhhhhhheeecccCCCc
Confidence 0123466789999999876567888999999999999887631 11111 000 00000 00001112111112233
Q ss_pred CEEE-Eeec-CeEEEEEcc---C--CCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 340 QHLL-SRDY-MNLKLWDIR---M--DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 340 ~~l~-sg~~-~~v~iwd~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
...+ .|++ +...++-+. + ..+.+..+.++...+ |+++.|...+.++.||++||.+
T Consensus 279 ~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~ei--------------VR~i~~~~~~~~l~TGGEDG~l 340 (376)
T KOG1188|consen 279 DTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEI--------------VRDILFDVKNDVLYTGGEDGLL 340 (376)
T ss_pred ceEEEeccccCceeEEEeeecccccccCccccccCCcHHH--------------HHHHhhhcccceeeccCCCceE
Confidence 4444 4444 554444332 1 134555666644333 2688888889999999999975
No 203
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=3e-14 Score=129.92 Aligned_cols=210 Identities=15% Similarity=0.156 Sum_probs=133.0
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecC---CeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290 29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (409)
Q Consensus 29 ~~h~~~v~~v~~~~~~~~la~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (409)
..+...+.+.+|+|||+.||..+.+ ..|.+||+.+++. ..+....
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~----------------------------~~l~~~~---- 239 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR----------------------------RVVANFK---- 239 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE----------------------------EEeecCC----
Confidence 3567889999999999999887743 3599999987753 1122222
Q ss_pred ccccceeccceEEEEEEecCCCCEEE-EEeCCCeEEEEEcC--CceeeeeeccCCCcccccccccccccCceeccCCCCC
Q 015290 106 YLKSLEIEEKINRVRWCAAPNGSMFI-LSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (409)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~-s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (409)
+.+....| +|||+.|+ +.+.++...||.++ ++....+
T Consensus 240 --------g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l------------------------------ 279 (427)
T PRK02889 240 --------GSNSAPAW--SPDGRTLAVALSRDGNSQIYTVNADGSGLRRL------------------------------ 279 (427)
T ss_pred --------CCccceEE--CCCCCEEEEEEccCCCceEEEEECCCCCcEEC------------------------------
Confidence 34567899 89999887 45777776776543 3322111
Q ss_pred ceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCC
Q 015290 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKP 260 (409)
Q Consensus 183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~ 260 (409)
..+........|+|||+.|+.. .++...+|.+...+.....+.
T Consensus 280 --------------------------------t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt--- 324 (427)
T PRK02889 280 --------------------------------TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT--- 324 (427)
T ss_pred --------------------------------CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe---
Confidence 2233334567899999988765 456777776642222222210
Q ss_pred CcCcCccCceEEEEEeCCCCCEEEEEeCCC---eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEecc
Q 015290 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (409)
Q Consensus 261 ~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 337 (409)
.. .......+|+|+| ++++..+.++ .|.+||+.+++. +.+.. ........|+|
T Consensus 325 --~~--g~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~~-----~~lt~--------------~~~~~~p~~sp 380 (427)
T PRK02889 325 --FT--GSYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLATGQV-----TALTD--------------TTRDESPSFAP 380 (427)
T ss_pred --cC--CCCcCceEECCCC-CEEEEEEccCCcEEEEEEECCCCCe-----EEccC--------------CCCccCceECC
Confidence 12 2233467899999 8888776554 699999987653 22222 11235689999
Q ss_pred CCCEEEEee-c-C--eEEEEEccCCCcceEEEecccCc
Q 015290 338 DGQHLLSRD-Y-M--NLKLWDIRMDSTPVATFKIHEHL 371 (409)
Q Consensus 338 ~g~~l~sg~-~-~--~v~iwd~~~~~~~~~~~~~~~~~ 371 (409)
||++|+..+ + + .+.+.++. +.....+..+.+.
T Consensus 381 dg~~l~~~~~~~g~~~l~~~~~~--g~~~~~l~~~~g~ 416 (427)
T PRK02889 381 NGRYILYATQQGGRSVLAAVSSD--GRIKQRLSVQGGD 416 (427)
T ss_pred CCCEEEEEEecCCCEEEEEEECC--CCceEEeecCCCC
Confidence 999988765 3 3 35555653 6666666655443
No 204
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=2.9e-15 Score=130.17 Aligned_cols=226 Identities=13% Similarity=0.154 Sum_probs=149.7
Q ss_pred cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCce---eeeeeecCCCccccc
Q 015290 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY---RYKTEFQSHEPEFDY 106 (409)
Q Consensus 30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~~~~ 106 (409)
.|.++|.|+++.++++.+.+|+-||+|+.|++..... .+..| .....+.||.
T Consensus 342 aH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d--------------------p~ds~dp~vl~~~l~Ght----- 396 (577)
T KOG0642|consen 342 AHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD--------------------PDDSYDPSVLSGTLLGHT----- 396 (577)
T ss_pred cccCceEEEEecCCceEEEeeccCceeeeeccCCCCC--------------------cccccCcchhccceeccc-----
Confidence 3999999999999999999999999999998762221 11122 3446788999
Q ss_pred cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (409)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (409)
+.|+.+++ ++....|++|+.||++++|+...... ..+..
T Consensus 397 -------davw~l~~--s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~------------------------------- 435 (577)
T KOG0642|consen 397 -------DAVWLLAL--SSTKDRLLSCSSDGTVRLWEPTEESP-CTFGE------------------------------- 435 (577)
T ss_pred -------cceeeeee--cccccceeeecCCceEEeeccCCcCc-cccCC-------------------------------
Confidence 89999999 57777899999999999999876544 11110
Q ss_pred cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (409)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~ 264 (409)
....+...++.+-... ..+++. .-+.-.++++. ....+.++........
T Consensus 436 ----------------------------~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~e-v~s~~~~~~s~~~~~~ 486 (577)
T KOG0642|consen 436 ----------------------------PKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDME-VVSDLLIFESSASPGP 486 (577)
T ss_pred ----------------------------ccccCCcceEeeccchhHhhhhhcccccccchhhh-hhhheeeccccCCCcc
Confidence 0111222344443222 112222 33333333433 2222222211111111
Q ss_pred CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE
Q 015290 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (409)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s 344 (409)
.-...+.-+.++|.+ .+.+++..|+.|+++|..++++. .... .|...++++++.|+|-+|++
T Consensus 487 ~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~~l----~s~~-------------a~~~svtslai~~ng~~l~s 548 (577)
T KOG0642|consen 487 RRYPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGKIL----HSMV-------------AHKDSVTSLAIDPNGPYLMS 548 (577)
T ss_pred cccCccceEEecCCC-CeeEecccCCceecccccccccc----hhee-------------eccceecceeecCCCceEEe
Confidence 122456788899998 89999999999999999988752 2222 23568999999999999999
Q ss_pred ee-cCeEEEEEccCCCcceEEEeccc
Q 015290 345 RD-YMNLKLWDIRMDSTPVATFKIHE 369 (409)
Q Consensus 345 g~-~~~v~iwd~~~~~~~~~~~~~~~ 369 (409)
|+ |+.+++|.+.. ..++.....|.
T Consensus 549 ~s~d~sv~l~kld~-k~~~~es~~~r 573 (577)
T KOG0642|consen 549 GSHDGSVRLWKLDV-KTCVLESTAHR 573 (577)
T ss_pred ecCCceeehhhccc-hheeecccccc
Confidence 97 59999999974 56655555443
No 205
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=2.7e-14 Score=130.67 Aligned_cols=207 Identities=13% Similarity=0.090 Sum_probs=132.2
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecC---CeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290 29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (409)
Q Consensus 29 ~~h~~~v~~v~~~~~~~~la~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (409)
..+...+.+.+|+|||+.||..+.+ ..|.+|++.+++. ..+....
T Consensus 200 t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~----------------------------~~l~~~~---- 247 (433)
T PRK04922 200 LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR----------------------------ELVASFR---- 247 (433)
T ss_pred ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE----------------------------EEeccCC----
Confidence 3466789999999999999988743 4699999987652 1122222
Q ss_pred ccccceeccceEEEEEEecCCCCEEE-EEeCCC--eEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCC
Q 015290 106 YLKSLEIEEKINRVRWCAAPNGSMFI-LSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (409)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~-s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (409)
+...+++| +|||+.|+ +.+.++ .|.+||+.+++...+
T Consensus 248 --------g~~~~~~~--SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l------------------------------ 287 (433)
T PRK04922 248 --------GINGAPSF--SPDGRRLALTLSRDGNPEIYVMDLGSRQLTRL------------------------------ 287 (433)
T ss_pred --------CCccCceE--CCCCCEEEEEEeCCCCceEEEEECCCCCeEEC------------------------------
Confidence 34456889 89998776 445555 588888877654332
Q ss_pred ceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCe--EEEEEccCCCceeeeeec
Q 015290 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDM 258 (409)
Q Consensus 183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~--i~lwd~~~~~~~~~~~~~ 258 (409)
..+.......+|+|||+.|+.+ .++. |+++|+. .+.....
T Consensus 288 --------------------------------t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~-~g~~~~l--- 331 (433)
T PRK04922 288 --------------------------------TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS-GGSAERL--- 331 (433)
T ss_pred --------------------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-CCCeEEe---
Confidence 1222334567999999988865 4554 5556665 3333222
Q ss_pred CCCcCcCccCceEEEEEeCCCCCEEEEEeCCC---eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEe
Q 015290 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (409)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 335 (409)
..+......++|+|+| ++++..+.++ .|.+||+.+++. ..+.. ........|
T Consensus 332 -----t~~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~~-----~~Lt~--------------~~~~~~p~~ 386 (433)
T PRK04922 332 -----TFQGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGSV-----RTLTP--------------GSLDESPSF 386 (433)
T ss_pred -----ecCCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCCCCe-----EECCC--------------CCCCCCceE
Confidence 1122334578999999 8777665433 689999987653 22222 112345789
Q ss_pred ccCCCEEEEeec----CeEEEEEccCCCcceEEEecccC
Q 015290 336 ANDGQHLLSRDY----MNLKLWDIRMDSTPVATFKIHEH 370 (409)
Q Consensus 336 s~~g~~l~sg~~----~~v~iwd~~~~~~~~~~~~~~~~ 370 (409)
+|||++|+..++ ..|.++++. +.....+..+..
T Consensus 387 spdG~~i~~~s~~~g~~~L~~~~~~--g~~~~~l~~~~g 423 (433)
T PRK04922 387 APNGSMVLYATREGGRGVLAAVSTD--GRVRQRLVSADG 423 (433)
T ss_pred CCCCCEEEEEEecCCceEEEEEECC--CCceEEcccCCC
Confidence 999998876542 467777774 555666654443
No 206
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=9.7e-15 Score=127.77 Aligned_cols=199 Identities=12% Similarity=0.129 Sum_probs=150.0
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCC---CeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
.+...|..+.|| ..|.||++...+ ..|.|+++.....+.-
T Consensus 519 ~~~k~i~~vtWH--rkGDYlatV~~~~~~~~VliHQLSK~~sQ~P----------------------------------- 561 (733)
T KOG0650|consen 519 KHPKSIRQVTWH--RKGDYLATVMPDSGNKSVLIHQLSKRKSQSP----------------------------------- 561 (733)
T ss_pred ecCCccceeeee--cCCceEEEeccCCCcceEEEEecccccccCc-----------------------------------
Confidence 344899999994 899999997543 5677887765433211
Q ss_pred ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (409)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (409)
+....+.|.++.|+|...+|+++....|++||+. ....++. +....
T Consensus 562 --------------------------F~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~-kqelvKk-------L~tg~ 607 (733)
T KOG0650|consen 562 --------------------------FRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLS-KQELVKK-------LLTGS 607 (733)
T ss_pred --------------------------hhhcCCceeEEEecCCCceEEEEeccceEEEehh-HHHHHHH-------HhcCC
Confidence 1344567899999999999999977889999998 4544443 44456
Q ss_pred CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (409)
Q Consensus 268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~ 347 (409)
..|.+++.+|.| .-|+.|+.|+.+..||+.-+.. ..+.+.. |...+++++|++.-.++++|+|
T Consensus 608 kwiS~msihp~G-Dnli~gs~d~k~~WfDldlssk---Pyk~lr~-------------H~~avr~Va~H~ryPLfas~sd 670 (733)
T KOG0650|consen 608 KWISSMSIHPNG-DNLILGSYDKKMCWFDLDLSSK---PYKTLRL-------------HEKAVRSVAFHKRYPLFASGSD 670 (733)
T ss_pred eeeeeeeecCCC-CeEEEecCCCeeEEEEcccCcc---hhHHhhh-------------hhhhhhhhhhccccceeeeecC
Confidence 789999999999 7888899999999999876431 1344444 4678999999999999999987
Q ss_pred -CeEEEEEccC------C--CcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 348 -MNLKLWDIRM------D--STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 348 -~~v~iwd~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
+++.|+--.- + --++..+.+|.... -++|..+.|+|...+|++++.||+|
T Consensus 671 Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~-----------~~gVLd~~wHP~qpWLfsAGAd~ti 729 (733)
T KOG0650|consen 671 DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTN-----------DLGVLDTIWHPRQPWLFSAGADGTI 729 (733)
T ss_pred CCcEEEEeeeeehhhhcCCceEeeeeccCceeec-----------ccceEeecccCCCceEEecCCCceE
Confidence 9998874221 0 13566777887641 2344689999999999999999987
No 207
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.5e-15 Score=131.57 Aligned_cols=182 Identities=16% Similarity=0.223 Sum_probs=131.7
Q ss_pred eeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCc
Q 015290 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (409)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (409)
-.++.||+ +.|++++| +.+|.+|++|+.|-.+.|||.-..+....+.
T Consensus 43 E~eL~GH~------------GCVN~LeW--n~dG~lL~SGSDD~r~ivWd~~~~KllhsI~------------------- 89 (758)
T KOG1310|consen 43 EAELTGHT------------GCVNCLEW--NADGELLASGSDDTRLIVWDPFEYKLLHSIS------------------- 89 (758)
T ss_pred hhhhcccc------------ceecceee--cCCCCEEeecCCcceEEeecchhcceeeeee-------------------
Confidence 35688999 99999999 7999999999999999999987655433322
Q ss_pred eeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC--CCeEEEe-cCCeEEEEEccCCC
Q 015290 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISD 250 (409)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~lwd~~~~~ 250 (409)
.+|...|.++.|-|. .+.+++| .|..|+++|+....
T Consensus 90 -----------------------------------------TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~ 128 (758)
T KOG1310|consen 90 -----------------------------------------TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSK 128 (758)
T ss_pred -----------------------------------------cccccceeEEeeeccCCCeEEEeccCcceEEEEeccccc
Confidence 789999999999884 5778888 99999999998321
Q ss_pred cee--eeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290 251 QCF--NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (409)
Q Consensus 251 ~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (409)
..- .-......-+..|...|..++-.|++|+.|-+++.||+|+-+|+|....|.... .. +.....+.+..-
T Consensus 129 ~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~---~~----~~~l~ny~~~li 201 (758)
T KOG1310|consen 129 EGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE---DC----PSILVNYNPQLI 201 (758)
T ss_pred ccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccc---cc----cHHHHHhchhhh
Confidence 100 000011122577889999999999999999999999999999999854332111 00 000000111123
Q ss_pred ceeeeEeccCC-CEEEEee-cCeEEEEEcc
Q 015290 329 SISDIKFANDG-QHLLSRD-YMNLKLWDIR 356 (409)
Q Consensus 329 ~i~~~~~s~~g-~~l~sg~-~~~v~iwd~~ 356 (409)
...+++++|.. .+||.|+ +-..++||.+
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 56789999975 5777875 5899999954
No 208
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=6.5e-15 Score=125.81 Aligned_cols=307 Identities=13% Similarity=0.120 Sum_probs=193.7
Q ss_pred ccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (409)
Q Consensus 27 ~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (409)
++-.|.+.|..|.|+..|..|++|+.|..|.+||...... .+.-..||.
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~--------------------------~l~f~SGH~----- 185 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP--------------------------KLSFESGHC----- 185 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCc--------------------------ccccccccc-----
Confidence 3445999999999999999999999999999999987764 233346777
Q ss_pred cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCc-eeeeeecc-CCCcccccccccccccCceeccCCCCCce
Q 015290 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEM-DHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (409)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (409)
..|..-.|.|..+..-+++++.||.+++=.+... .+...... .+...+..+ .+.......+
T Consensus 186 -------~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhkl----------av~p~sp~~f 248 (559)
T KOG1334|consen 186 -------NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKL----------AVEPDSPKPF 248 (559)
T ss_pred -------cchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCcccee----------eecCCCCCcc
Confidence 7788888988777788999999999998876533 22212211 111111111 1111111222
Q ss_pred eecccccccceeEEEecCCcccceeeeeecccccc---ceeEEEeCCCCC-eEEEe-cCCeEEEEEccCCCce-----ee
Q 015290 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDF---NINSISNNSDCE-TFVSA-DDLRINLWNLEISDQC-----FN 254 (409)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~-----~~ 254 (409)
+.++ .|+.+.-.|+...........- ..+.. ....++.+|... .+++| .|..+++||.+.-... +.
T Consensus 249 ~S~g---eD~~v~~~Dlr~~~pa~~~~cr-~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~ 324 (559)
T KOG1334|consen 249 LSCG---EDAVVFHIDLRQDVPAEKFVCR-EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLD 324 (559)
T ss_pred cccc---cccceeeeeeccCCccceeeee-ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhh
Confidence 2222 2566666666554333332211 22333 457888888754 77788 9999999998732111 11
Q ss_pred eeecCCCc-CcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCccccccccc--cee
Q 015290 255 IVDMKPSN-MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SIS 331 (409)
Q Consensus 255 ~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~ 331 (409)
.+ -+.. .......|++++|+.++ .-|.+.-.|-.|+++.-..+.- . .........+.....+++|.. .|-
T Consensus 325 ~f--~p~hl~~d~~v~ITgl~Ysh~~-sElLaSYnDe~IYLF~~~~~~G-~---~p~~~s~~~~~~k~vYKGHrN~~TVK 397 (559)
T KOG1334|consen 325 KF--CPHHLVEDDPVNITGLVYSHDG-SELLASYNDEDIYLFNKSMGDG-S---EPDPSSPREQYVKRVYKGHRNSRTVK 397 (559)
T ss_pred hc--CCccccccCcccceeEEecCCc-cceeeeecccceEEeccccccC-C---CCCCCcchhhccchhhcccccccccc
Confidence 11 0000 11223568999999877 4444455677788884332211 0 000000111223334666754 455
Q ss_pred eeE-eccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 332 DIK-FANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 332 ~~~-~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
.+- |-|...|+++|+| |.|.||+-.+ ++.+..+.+....+ .|+.=+|--..||+++-|..|
T Consensus 398 gVNFfGPrsEyVvSGSDCGhIFiW~K~t-~eii~~MegDr~VV---------------NCLEpHP~~PvLAsSGid~DV 460 (559)
T KOG1334|consen 398 GVNFFGPRSEYVVSGSDCGHIFIWDKKT-GEIIRFMEGDRHVV---------------NCLEPHPHLPVLASSGIDHDV 460 (559)
T ss_pred eeeeccCccceEEecCccceEEEEecch-hHHHHHhhcccceE---------------eccCCCCCCchhhccCCccce
Confidence 555 4688899999999 9999999875 88888888777755 588888888899998887654
No 209
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=3.2e-15 Score=124.32 Aligned_cols=202 Identities=18% Similarity=0.212 Sum_probs=142.8
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (409)
+.|++|.| +.+++.|++|+.|..+++|.+..--..++
T Consensus 57 GCiNAlqF--S~N~~~L~SGGDD~~~~~W~~de~~~~k~----------------------------------------- 93 (609)
T KOG4227|consen 57 GCINALQF--SHNDRFLASGGDDMHGRVWNVDELMVRKT----------------------------------------- 93 (609)
T ss_pred cccceeee--ccCCeEEeecCCcceeeeechHHHHhhcC-----------------------------------------
Confidence 99999999 78899999999999999999864322221
Q ss_pred ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEE
Q 015290 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (409)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (409)
.+++...-..|...|.|++|.....++++| .+++|.+.|++ +.+.+.++. -....+.|+.
T Consensus 94 -------------~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiE-t~qsi~V~~-----~~~~~~~VY~ 154 (609)
T KOG4227|consen 94 -------------PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIE-TKQSIYVAN-----ENNNRGDVYH 154 (609)
T ss_pred -------------CCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecc-cceeeeeec-----ccCcccceee
Confidence 122332224577899999999999999999 99999999999 666666531 1223458999
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC-CEEEEeec-CeE
Q 015290 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDY-MNL 350 (409)
Q Consensus 273 ~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~sg~~-~~v 350 (409)
+..+|.. +.|++.+.++.|.+||.+...... ..+-. + ........+.|+|.. .+|++.+. +.+
T Consensus 155 m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~---~~~~~-A----------N~~~~F~t~~F~P~~P~Li~~~~~~~G~ 219 (609)
T KOG4227|consen 155 MDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPI---SLVLP-A----------NSGKNFYTAEFHPETPALILVNSETGGP 219 (609)
T ss_pred cccCCCC-ceEEEEecCceEEEEeccCCCCCC---ceeee-c----------CCCccceeeeecCCCceeEEeccccCCC
Confidence 9999997 999999999999999998754221 11111 0 112457788999976 56677776 999
Q ss_pred EEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEE
Q 015290 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (409)
Q Consensus 351 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s 401 (409)
-+||.+++..++..+.+..+..... .+. -++.|+|.|..|.+
T Consensus 220 ~~~D~R~~~~~~~~~~~~~~L~~~~-----~~~----M~~~~~~~G~Q~ms 261 (609)
T KOG4227|consen 220 NVFDRRMQARPVYQRSMFKGLPQEN-----TEW----MGSLWSPSGNQFMS 261 (609)
T ss_pred CceeeccccchHHhhhccccCcccc-----hhh----hheeeCCCCCeehh
Confidence 9999997655554444333221100 000 26788888876654
No 210
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=1e-13 Score=114.68 Aligned_cols=157 Identities=18% Similarity=0.252 Sum_probs=120.7
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (409)
..|.+|.+ +-++|+++-.+. |.|||+++.++.......
T Consensus 88 t~IL~Vrm----Nr~RLvV~Lee~-IyIydI~~MklLhTI~t~------------------------------------- 125 (391)
T KOG2110|consen 88 TSILAVRM----NRKRLVVCLEES-IYIYDIKDMKLLHTIETT------------------------------------- 125 (391)
T ss_pred CceEEEEE----ccceEEEEEccc-EEEEecccceeehhhhcc-------------------------------------
Confidence 57999998 345777776655 999999988765543210
Q ss_pred ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEE--e-cCCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (409)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~--~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (409)
..+...+.++++++.+.+++. . ..|.|.+||.. +-+.... +..|.+.+
T Consensus 126 ---------------------~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~-nl~~v~~-------I~aH~~~l 176 (391)
T KOG2110|consen 126 ---------------------PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI-NLQPVNT-------INAHKGPL 176 (391)
T ss_pred ---------------------CCCccceEeeccCCCCceEEecCCCCCceEEEEEcc-cceeeeE-------EEecCCce
Confidence 234455667777777778886 3 78999999998 6666665 57899999
Q ss_pred EEEEEeCCCCCEEEEEeCCCe-EEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-C
Q 015290 271 TSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 348 (409)
Q Consensus 271 ~~~~~~p~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~ 348 (409)
-+++|+++| .+||++|..|+ |||+.+.+++. +..|+. . -....|.+++|+|++++|++.++ +
T Consensus 177 Aalafs~~G-~llATASeKGTVIRVf~v~~G~k----l~eFRR-G----------~~~~~IySL~Fs~ds~~L~~sS~Te 240 (391)
T KOG2110|consen 177 AALAFSPDG-TLLATASEKGTVIRVFSVPEGQK----LYEFRR-G----------TYPVSIYSLSFSPDSQFLAASSNTE 240 (391)
T ss_pred eEEEECCCC-CEEEEeccCceEEEEEEcCCccE----eeeeeC-C----------ceeeEEEEEEECCCCCeEEEecCCC
Confidence 999999999 99999999886 79999988764 233333 0 00247899999999999999887 9
Q ss_pred eEEEEEccC
Q 015290 349 NLKLWDIRM 357 (409)
Q Consensus 349 ~v~iwd~~~ 357 (409)
+|+++.+..
T Consensus 241 TVHiFKL~~ 249 (391)
T KOG2110|consen 241 TVHIFKLEK 249 (391)
T ss_pred eEEEEEecc
Confidence 999999874
No 211
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=6.9e-15 Score=123.56 Aligned_cols=192 Identities=18% Similarity=0.209 Sum_probs=132.7
Q ss_pred EEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccccee
Q 015290 117 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 196 (409)
Q Consensus 117 ~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 196 (409)
..++| +.+|..+++++.||++|+|+..+......
T Consensus 148 k~vaf--~~~gs~latgg~dg~lRv~~~Ps~~t~l~-------------------------------------------- 181 (398)
T KOG0771|consen 148 KVVAF--NGDGSKLATGGTDGTLRVWEWPSMLTILE-------------------------------------------- 181 (398)
T ss_pred eEEEE--cCCCCEeeeccccceEEEEecCcchhhhh--------------------------------------------
Confidence 67888 78999999999999999999655432221
Q ss_pred EEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEE
Q 015290 197 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 275 (409)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 275 (409)
...|.+.|.++.|+|||++|++- .| ..++|+.+ ++..+... +-.........+.|
T Consensus 182 -----------------e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~-~g~~~a~~-----t~~~k~~~~~~cRF 237 (398)
T KOG0771|consen 182 -----------------EIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN-TGAALARK-----TPFSKDEMFSSCRF 237 (398)
T ss_pred -----------------hHhhcCccccceeCCCCcEEEEecCC-ceEEEEec-cCchhhhc-----CCcccchhhhhcee
Confidence 15788999999999999999997 77 99999999 56444431 01223344566777
Q ss_pred eCCC--CC-EEEE-EeCCCeEEEEeCCCcccc--ccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-C
Q 015290 276 HPIY--CN-LLAY-SSSRGFVRLVDMRQSALC--DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 348 (409)
Q Consensus 276 ~p~~--~~-~l~s-~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~ 348 (409)
+.++ +. ++++ ....+.|+.||+....-. ....+.... ...|.+++.++||+++|.|+. |
T Consensus 238 ~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~--------------~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 238 SVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR--------------FKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred cccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc--------------cCcceeEEEcCCCcEEEEeccCC
Confidence 7653 12 2332 234456777766543210 000111111 247999999999999999985 9
Q ss_pred eEEEEEccCCCcceEEE-ecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 349 NLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 349 ~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
.|-|++..+ -+.++-. +.|...+ +.+.|+||.+++++.+.|..+
T Consensus 304 sVai~~~~~-lq~~~~vk~aH~~~V---------------T~ltF~Pdsr~~~svSs~~~~ 348 (398)
T KOG0771|consen 304 SVAIYDAKS-LQRLQYVKEAHLGFV---------------TGLTFSPDSRYLASVSSDNEA 348 (398)
T ss_pred cEEEEEece-eeeeEeehhhheeee---------------eeEEEcCCcCcccccccCCce
Confidence 999999875 4444433 4566655 799999999999988877653
No 212
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.64 E-value=5.1e-15 Score=127.90 Aligned_cols=178 Identities=20% Similarity=0.309 Sum_probs=129.5
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
|.+.|.+-.|+|||.-|++++.||.|++|.-.+.-. .++....
T Consensus 103 H~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLR----------------------------Stl~Q~~--------- 145 (737)
T KOG1524|consen 103 HAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLR----------------------------STVVQNE--------- 145 (737)
T ss_pred hhhhhhhcccCCCCceeeeecCCceEEEEeccchHH----------------------------HHHhhcC---------
Confidence 889999999999999999999999999999765431 1222223
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
.+|.|++| .|++..++.|..+ .+.|=-+.-.
T Consensus 146 ---~~v~c~~W--~p~S~~vl~c~g~-h~~IKpL~~n------------------------------------------- 176 (737)
T KOG1524|consen 146 ---ESIRCARW--APNSNSIVFCQGG-HISIKPLAAN------------------------------------------- 176 (737)
T ss_pred ---ceeEEEEE--CCCCCceEEecCC-eEEEeecccc-------------------------------------------
Confidence 68999999 5777666665443 3433222211
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (409)
.++++ ..+|++-|.++.|++..+.+++| .|-..++||-. +..+.. -..|..+
T Consensus 177 ----------------~k~i~--WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~--G~~Lf~-------S~~~ey~ 229 (737)
T KOG1524|consen 177 ----------------SKIIR--WRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ--GANLFT-------SAAEEYA 229 (737)
T ss_pred ----------------cceeE--EeccCcEEEEeecCccccceeecCCceeEEeeccc--Cccccc-------CChhccc
Confidence 01111 16899999999999999999999 99999999987 444433 4668899
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-C
Q 015290 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 348 (409)
Q Consensus 270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~ 348 (409)
|++++|+|+ ..++.+|.. ++++ .. .+ .+.|..++||+||..+++|.. |
T Consensus 230 ITSva~npd--~~~~v~S~n-t~R~---~~----------p~---------------~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 230 ITSVAFNPE--KDYLLWSYN-TARF---SS----------PR---------------VGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred eeeeeeccc--cceeeeeee-eeee---cC----------CC---------------ccceEEEEEcCCCceeeccccCc
Confidence 999999998 466656543 3441 11 11 357999999999999999875 6
Q ss_pred eEEE
Q 015290 349 NLKL 352 (409)
Q Consensus 349 ~v~i 352 (409)
.+.+
T Consensus 279 ~v~~ 282 (737)
T KOG1524|consen 279 QLIV 282 (737)
T ss_pred eEEE
Confidence 6654
No 213
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1e-13 Score=126.44 Aligned_cols=185 Identities=12% Similarity=0.140 Sum_probs=117.9
Q ss_pred cceEEEEEEecCCCCEEEEEeCC---CeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
..+.+.+| +|||+.|+..+.+ ..|.+||+.+++...+.
T Consensus 196 ~~v~~p~w--SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~------------------------------------- 236 (427)
T PRK02889 196 EPIISPAW--SPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA------------------------------------- 236 (427)
T ss_pred CCcccceE--cCCCCEEEEEEccCCCcEEEEEECCCCCEEEee-------------------------------------
Confidence 67889999 7999999887643 35899999877543321
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEE-e-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (409)
...+.+...+|+|||+.|+. . .++...||.+...+..... +..+..
T Consensus 237 -------------------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-------lt~~~~ 284 (427)
T PRK02889 237 -------------------------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRR-------LTQSSG 284 (427)
T ss_pred -------------------------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEE-------CCCCCC
Confidence 11233457899999998874 4 6777677665422322332 344445
Q ss_pred ceEEEEEeCCCCCEEEEEeC-CCeEEEEeC--CCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290 269 VITSAEFHPIYCNLLAYSSS-RGFVRLVDM--RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (409)
Q Consensus 269 ~v~~~~~~p~~~~~l~s~s~-dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg 345 (409)
......|+||| +.|+..+. +|...+|.+ .+++. ..+.. . .......+|+|||++|+..
T Consensus 285 ~~~~~~wSpDG-~~l~f~s~~~g~~~Iy~~~~~~g~~-----~~lt~-----------~--g~~~~~~~~SpDG~~Ia~~ 345 (427)
T PRK02889 285 IDTEPFFSPDG-RSIYFTSDRGGAPQIYRMPASGGAA-----QRVTF-----------T--GSYNTSPRISPDGKLLAYI 345 (427)
T ss_pred CCcCeEEcCCC-CEEEEEecCCCCcEEEEEECCCCce-----EEEec-----------C--CCCcCceEECCCCCEEEEE
Confidence 56678999999 77665553 456666654 33321 11111 0 1223467899999999866
Q ss_pred ec----CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290 346 DY----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRR 406 (409)
Q Consensus 346 ~~----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg 406 (409)
+. ..|.+||+.. ++.. .+..... . ....|+|||++|+.++.++
T Consensus 346 s~~~g~~~I~v~d~~~-g~~~-~lt~~~~-~---------------~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 346 SRVGGAFKLYVQDLAT-GQVT-ALTDTTR-D---------------ESPSFAPNGRYILYATQQG 392 (427)
T ss_pred EccCCcEEEEEEECCC-CCeE-EccCCCC-c---------------cCceECCCCCEEEEEEecC
Confidence 43 3699999975 4432 3322211 1 2689999999998877654
No 214
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=2.9e-13 Score=123.33 Aligned_cols=184 Identities=16% Similarity=0.170 Sum_probs=119.2
Q ss_pred cceEEEEEEecCCCCEEEEEe---CCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 114 EKINRVRWCAAPNGSMFILST---NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
..+.+.+| +|||+.|+..+ .+..|.+|++.+++...+..
T Consensus 199 ~~~~~p~w--SPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~------------------------------------ 240 (429)
T PRK03629 199 QPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS------------------------------------ 240 (429)
T ss_pred CceeeeEE--cCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC------------------------------------
Confidence 57899999 89999988754 23578888887765433211
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCC--eEEEEEccCCCceeeeeecCCCcCcCc
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDL 266 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (409)
....+..++|+|||+.|+.. .++ .|++||+. .+..... ..+
T Consensus 241 --------------------------~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~-tg~~~~l--------t~~ 285 (429)
T PRK03629 241 --------------------------FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA-SGQIRQV--------TDG 285 (429)
T ss_pred --------------------------CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEc--------cCC
Confidence 11223457999999988864 344 58889988 4444332 333
Q ss_pred cCceEEEEEeCCCCCEEEEEeCC-Ce--EEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290 267 TEVITSAEFHPIYCNLLAYSSSR-GF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (409)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~s~s~d-g~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 343 (409)
...+....|+|+| +.|+..+.+ +. |.++|+.+++. ..+.. .........|+|||++|+
T Consensus 286 ~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g~~-----~~lt~-------------~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 286 RSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGGAP-----QRITW-------------EGSQNQDADVSSDGKFMV 346 (429)
T ss_pred CCCcCceEECCCC-CEEEEEeCCCCCceEEEEECCCCCe-----EEeec-------------CCCCccCEEECCCCCEEE
Confidence 4457789999999 877766643 44 44446655432 11111 012355789999999988
Q ss_pred Eee-c---CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290 344 SRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD 407 (409)
Q Consensus 344 sg~-~---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~ 407 (409)
..+ + ..|.+||+.. ++ ...+..... . ....|+|||++|+.++.++.
T Consensus 347 ~~~~~~g~~~I~~~dl~~-g~-~~~Lt~~~~-~---------------~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLAT-GG-VQVLTDTFL-D---------------ETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred EEEccCCCceEEEEECCC-CC-eEEeCCCCC-C---------------CCceECCCCCEEEEEEcCCC
Confidence 653 2 4688999875 43 333432211 1 26889999999999888764
No 215
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.8e-13 Score=125.41 Aligned_cols=204 Identities=14% Similarity=0.106 Sum_probs=132.1
Q ss_pred cccCCCcEEEEEECCCCCEEEEEec---CCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccc
Q 015290 28 ELQDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~~~~~la~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (409)
...|...+.+.+|+|||+.||..+. +..|.+||+.+++. ..+..+.
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~----------------------------~~l~~~~--- 245 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR----------------------------ELVGNFP--- 245 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE----------------------------EEeecCC---
Confidence 3347789999999999999988763 46899999987652 2233333
Q ss_pred cccccceeccceEEEEEEecCCCCEEE-EEeCCCe--EEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCC
Q 015290 105 DYLKSLEIEEKINRVRWCAAPNGSMFI-LSTNDKT--IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (409)
Q Consensus 105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (409)
+.+...+| +|||+.|+ +.+.++. |.+||+.++....+
T Consensus 246 ---------g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~L----------------------------- 285 (435)
T PRK05137 246 ---------GMTFAPRF--SPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRL----------------------------- 285 (435)
T ss_pred ---------CcccCcEE--CCCCCEEEEEEecCCCceEEEEECCCCceEEc-----------------------------
Confidence 56678899 89998876 4455554 66667766644332
Q ss_pred CceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCC--eEEEEEccCCCceeeeee
Q 015290 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVD 257 (409)
Q Consensus 182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~--~i~lwd~~~~~~~~~~~~ 257 (409)
..+........|+|||+.++.. .+| .|+++|+. .+.....
T Consensus 286 ---------------------------------t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~-g~~~~~l-- 329 (435)
T PRK05137 286 ---------------------------------TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD-GSNPRRI-- 329 (435)
T ss_pred ---------------------------------cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC-CCCeEEe--
Confidence 2233344568999999988865 333 67777876 4433322
Q ss_pred cCCCcCcCccCceEEEEEeCCCCCEEEEEeCC---CeEEEEeCCCccccccccccccccccccCCcccccccccceeeeE
Q 015290 258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 334 (409)
Q Consensus 258 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 334 (409)
..+...+....|+|+| +.|+..+.+ ..|.+||+..+.. +.+.. ...+..+.
T Consensus 330 ------t~~~~~~~~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~~~~-----~~lt~--------------~~~~~~p~ 383 (435)
T PRK05137 330 ------SFGGGRYSTPVWSPRG-DLIAFTKQGGGQFSIGVMKPDGSGE-----RILTS--------------GFLVEGPT 383 (435)
T ss_pred ------ecCCCcccCeEECCCC-CEEEEEEcCCCceEEEEEECCCCce-----EeccC--------------CCCCCCCe
Confidence 2223445678899999 887776543 3578888765432 22222 12356789
Q ss_pred eccCCCEEEEee-c-C-----eEEEEEccCCCcceEEEe
Q 015290 335 FANDGQHLLSRD-Y-M-----NLKLWDIRMDSTPVATFK 366 (409)
Q Consensus 335 ~s~~g~~l~sg~-~-~-----~v~iwd~~~~~~~~~~~~ 366 (409)
|+|||++|+... + + .++++|+. +.....+.
T Consensus 384 ~spDG~~i~~~~~~~~~~~~~~L~~~dl~--g~~~~~l~ 420 (435)
T PRK05137 384 WAPNGRVIMFFRQTPGSGGAPKLYTVDLT--GRNEREVP 420 (435)
T ss_pred ECCCCCEEEEEEccCCCCCcceEEEEECC--CCceEEcc
Confidence 999999887643 2 2 57777775 44444444
No 216
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.62 E-value=9.3e-14 Score=111.63 Aligned_cols=117 Identities=13% Similarity=0.252 Sum_probs=87.4
Q ss_pred cccceeEEEeCCCCCeEEE--e-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeC---CC
Q 015290 217 HDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RG 290 (409)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~--~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~---dg 290 (409)
..++|.+++|+|+|+.+++ | .+..|.+||++ ...+.. + +...+..+.|+|+| ++|++++. .|
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~--~~~i~~-------~--~~~~~n~i~wsP~G-~~l~~~g~~n~~G 125 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK--GKKIFS-------F--GTQPRNTISWSPDG-RFLVLAGFGNLNG 125 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc--ccEeEe-------e--cCCCceEEEECCCC-CEEEEEEccCCCc
Confidence 4457999999999998764 5 67899999997 444433 2 24567899999999 99998874 46
Q ss_pred eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-------cCeEEEEEccCCCcceE
Q 015290 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-------YMNLKLWDIRMDSTPVA 363 (409)
Q Consensus 291 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-------~~~v~iwd~~~~~~~~~ 363 (409)
.|.+||.++.+. +...+. ..+..++|+|||++|+++. |+.++||+.. |+.+.
T Consensus 126 ~l~~wd~~~~~~----i~~~~~---------------~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~--G~~l~ 184 (194)
T PF08662_consen 126 DLEFWDVRKKKK----ISTFEH---------------SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ--GRLLY 184 (194)
T ss_pred EEEEEECCCCEE----eecccc---------------CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec--CeEeE
Confidence 799999997543 122222 3578999999999999863 4788999985 77665
Q ss_pred EEe
Q 015290 364 TFK 366 (409)
Q Consensus 364 ~~~ 366 (409)
...
T Consensus 185 ~~~ 187 (194)
T PF08662_consen 185 KKP 187 (194)
T ss_pred ecc
Confidence 543
No 217
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=7.2e-13 Score=109.46 Aligned_cols=226 Identities=13% Similarity=0.142 Sum_probs=136.8
Q ss_pred CCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 32 VDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 32 ~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
...|+|++|-| .++-|++|+..| |.||........ ++.++....+. -.+..-.||
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~---~r~~~~~s~~~----------~qvl~~pgh---------- 195 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA---NRNIRMMSTHH----------LQVLQDPGH---------- 195 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCccccc---ccccccccccc----------hhheeCCCC----------
Confidence 46899999999 567888888765 999987643321 00011000000 001122344
Q ss_pred eeccceEEEEEEecCCCCEEEEEeC-CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (409)
.+|++++| ++||..+++++. |..|+|||..++....+..
T Consensus 196 ---~pVtsmqw--n~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~----------------------------------- 235 (445)
T KOG2139|consen 196 ---NPVTSMQW--NEDGTILVTASFGSSSIMIWDPDTGQKIPLIP----------------------------------- 235 (445)
T ss_pred ---ceeeEEEE--cCCCCEEeecccCcceEEEEcCCCCCcccccc-----------------------------------
Confidence 48999999 789999999864 5789999999987655421
Q ss_pred ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccC
Q 015290 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (409)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (409)
...+.+.-+.|+||+.+|+++ -|+..++|+....-...+ ..-..+
T Consensus 236 --------------------------~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~er--------w~lgsg 281 (445)
T KOG2139|consen 236 --------------------------KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKER--------WILGSG 281 (445)
T ss_pred --------------------------cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecc--------eeccCC
Confidence 123457789999999999999 999999997652222221 222345
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccc--ccccccc--cccCCcccccc---cccceeeeEeccCCCE
Q 015290 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA--RILRDAA--ESHGSKSFFTE---IIASISDIKFANDGQH 341 (409)
Q Consensus 269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~---~~~~i~~~~~s~~g~~ 341 (409)
.|...+|+|+|..+|++.+.... +|.+.-...+.... .....+. .+-...++..+ -.+.+.+++|.|.|.+
T Consensus 282 rvqtacWspcGsfLLf~~sgsp~--lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGey 359 (445)
T KOG2139|consen 282 RVQTACWSPCGSFLLFACSGSPR--LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEY 359 (445)
T ss_pred ceeeeeecCCCCEEEEEEcCCce--EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCE
Confidence 89999999999555555555544 44332211110000 0000000 00000111111 1367899999999999
Q ss_pred EEEeec---------CeEEEEEccC
Q 015290 342 LLSRDY---------MNLKLWDIRM 357 (409)
Q Consensus 342 l~sg~~---------~~v~iwd~~~ 357 (409)
||+.-. ..|.+||.+.
T Consensus 360 Lav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 360 LAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred EEEEEcCCchhhhhhhhhhhhcccc
Confidence 997422 3467788764
No 218
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=6.3e-13 Score=121.86 Aligned_cols=182 Identities=12% Similarity=0.029 Sum_probs=119.9
Q ss_pred cceEEEEEEecCCCCEEEEEeC---CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
..+.+.+| +|||+.|+..+. +..|.+||+.+++...+
T Consensus 202 ~~v~~p~w--SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l-------------------------------------- 241 (435)
T PRK05137 202 SLVLTPRF--SPNRQEITYMSYANGRPRVYLLDLETGQRELV-------------------------------------- 241 (435)
T ss_pred CCeEeeEE--CCCCCEEEEEEecCCCCEEEEEECCCCcEEEe--------------------------------------
Confidence 68999999 899999888753 46899999887654332
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEE-e-cCCe--EEEEEccCCCceeeeeecCCCcCcCc
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLR--INLWNLEISDQCFNIVDMKPSNMDDL 266 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~--i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (409)
..+.+.+...+|+|||+.|+. . .++. |++||+. .+.... +..+
T Consensus 242 ------------------------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~--------Lt~~ 288 (435)
T PRK05137 242 ------------------------GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR-SGTTTR--------LTDS 288 (435)
T ss_pred ------------------------ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC-CCceEE--------ccCC
Confidence 223344567899999998764 3 4554 7777887 444332 3445
Q ss_pred cCceEEEEEeCCCCCEEEEEeC-CC--eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290 267 TEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (409)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 343 (409)
........|+|+| +.|+..+. +| .|.+||+..++. +.+.. +...+....|+|||++|+
T Consensus 289 ~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~-----~~lt~-------------~~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 289 PAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNP-----RRISF-------------GGGRYSTPVWSPRGDLIA 349 (435)
T ss_pred CCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCe-----EEeec-------------CCCcccCeEECCCCCEEE
Confidence 5556789999999 87776653 33 678888776542 22211 023456688999999998
Q ss_pred Eee-c---CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290 344 SRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR 405 (409)
Q Consensus 344 sg~-~---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d 405 (409)
... + ..|.+||+.. .....+.... .. ....|+|||+.|+..+.+
T Consensus 350 ~~~~~~~~~~i~~~d~~~--~~~~~lt~~~-~~---------------~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDG--SGERILTSGF-LV---------------EGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred EEEcCCCceEEEEEECCC--CceEeccCCC-CC---------------CCCeECCCCCEEEEEEcc
Confidence 754 2 4688888753 3333332211 11 378999999998765543
No 219
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=9.9e-13 Score=102.87 Aligned_cols=222 Identities=14% Similarity=0.208 Sum_probs=146.3
Q ss_pred ccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (409)
Q Consensus 27 ~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (409)
.+..|+.+|+.++|. ..+|++|+ ||.|+=|......+. .+....|...++++.
T Consensus 57 ~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es-----------~~~K~lwe~~~P~~~------------- 109 (325)
T KOG0649|consen 57 PEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEES-----------LATKRLWEVKIPMQV------------- 109 (325)
T ss_pred eccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhh-----------ccchhhhhhcCcccc-------------
Confidence 335699999999999 45777776 599999987654321 000111111111110
Q ss_pred cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (409)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (409)
..++. ..|+++-. .|...-+++++.|+.+.-||+++|+.++.+
T Consensus 110 -~~~ev-PeINam~l--dP~enSi~~AgGD~~~y~~dlE~G~i~r~~--------------------------------- 152 (325)
T KOG0649|consen 110 -DAVEV-PEINAMWL--DPSENSILFAGGDGVIYQVDLEDGRIQREY--------------------------------- 152 (325)
T ss_pred -CcccC-CccceeEe--ccCCCcEEEecCCeEEEEEEecCCEEEEEE---------------------------------
Confidence 00111 46888888 566667777889999999999999876652
Q ss_pred cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCC--CcC
Q 015290 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP--SNM 263 (409)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~--~~~ 263 (409)
++|.+.|.++.--.....+++| .||++++||.+ +.+..+++..-. ..+
T Consensus 153 ----------------------------rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~k-t~k~v~~ie~yk~~~~l 203 (325)
T KOG0649|consen 153 ----------------------------RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTK-TQKHVSMIEPYKNPNLL 203 (325)
T ss_pred ----------------------------cCCcceeeeeeecccCcceeecCCCccEEEEecc-ccceeEEeccccChhhc
Confidence 7999999999885455578888 99999999999 777776654321 122
Q ss_pred cCc-cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEE
Q 015290 264 DDL-TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (409)
Q Consensus 264 ~~~-~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 342 (409)
..| ..+|.+++.+. .++++|+ ...+.+|.+++.+. ..++.. .+.+..+.|..| .+
T Consensus 204 Rp~~g~wigala~~e---dWlvCGg-Gp~lslwhLrsse~----t~vfpi--------------pa~v~~v~F~~d--~v 259 (325)
T KOG0649|consen 204 RPDWGKWIGALAVNE---DWLVCGG-GPKLSLWHLRSSES----TCVFPI--------------PARVHLVDFVDD--CV 259 (325)
T ss_pred CcccCceeEEEeccC---ceEEecC-CCceeEEeccCCCc----eEEEec--------------ccceeEeeeecc--eE
Confidence 223 34567777654 5677664 55699999998653 244444 356788888755 56
Q ss_pred EEeec-CeEEEEEccCCCcceEEEec
Q 015290 343 LSRDY-MNLKLWDIRMDSTPVATFKI 367 (409)
Q Consensus 343 ~sg~~-~~v~iwd~~~~~~~~~~~~~ 367 (409)
++++. +.|.-|.+. |..-.....
T Consensus 260 l~~G~g~~v~~~~l~--Gvl~a~ip~ 283 (325)
T KOG0649|consen 260 LIGGEGNHVQSYTLN--GVLQANIPV 283 (325)
T ss_pred EEeccccceeeeeec--cEEEEeccC
Confidence 66664 889999875 554444443
No 220
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.59 E-value=2.8e-13 Score=110.06 Aligned_cols=179 Identities=15% Similarity=0.261 Sum_probs=134.9
Q ss_pred eeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceee
Q 015290 14 WKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRY 93 (409)
Q Consensus 14 w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (409)
|+.-..+++ |...|+.|+|+|..+.|++|+.|..-.||....+. .+++
T Consensus 45 w~~~htls~--------Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~------------------------~Wkp 92 (361)
T KOG1523|consen 45 WEPAHTLSE--------HDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG------------------------TWKP 92 (361)
T ss_pred ceeceehhh--------hCcceeEEeecCCCCceeEccCCCCccccccCCCC------------------------eecc
Confidence 555555444 89999999999999999999999999999984332 3344
Q ss_pred eeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCc
Q 015290 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (409)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (409)
.-.+..+. ..+++|.| +|.++.|++++.-+.|.||-++..+--...
T Consensus 93 tlvLlRiN------------rAAt~V~W--sP~enkFAVgSgar~isVcy~E~ENdWWVs-------------------- 138 (361)
T KOG1523|consen 93 TLVLLRIN------------RAATCVKW--SPKENKFAVGSGARLISVCYYEQENDWWVS-------------------- 138 (361)
T ss_pred ceeEEEec------------cceeeEee--cCcCceEEeccCccEEEEEEEecccceehh--------------------
Confidence 44455555 89999999 799999999999999999988754322211
Q ss_pred eeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCce
Q 015290 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC 252 (409)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~ 252 (409)
+.++ ..+...|.+++|+|++-+|++| .|+..+++..-..
T Consensus 139 ----------------------------------Khik---kPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK--- 178 (361)
T KOG1523|consen 139 ----------------------------------KHIK---KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIK--- 178 (361)
T ss_pred ----------------------------------hhhC---CccccceeeeeccCCcceecccccCcceeEEEEeee---
Confidence 1111 4567789999999999999999 9999999875311
Q ss_pred eeeeecCC---------------CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcc
Q 015290 253 FNIVDMKP---------------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA 301 (409)
Q Consensus 253 ~~~~~~~~---------------~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~ 301 (409)
-++.++ .++....+.+..+.|+|+| ..|+-.+.|..+.+-|.....
T Consensus 179 --~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG-~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 179 --GVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG-NRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred --ccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC-CEeeEecCCCceEEeecCCCc
Confidence 111111 0122346789999999999 999999999999999987754
No 221
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=4.5e-13 Score=122.65 Aligned_cols=182 Identities=14% Similarity=0.112 Sum_probs=118.0
Q ss_pred cceEEEEEEecCCCCEEEEEeCC---CeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
..+.+.+| +|||+.|+..+.+ ..|.+||+.+++...+
T Consensus 204 ~~v~~p~w--SpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-------------------------------------- 243 (433)
T PRK04922 204 EPILSPAW--SPDGKKLAYVSFERGRSAIYVQDLATGQRELV-------------------------------------- 243 (433)
T ss_pred CccccccC--CCCCCEEEEEecCCCCcEEEEEECCCCCEEEe--------------------------------------
Confidence 67889999 8999999887643 4688899877654332
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEE-e-cCC--eEEEEEccCCCceeeeeecCCCcCcCc
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDL--RINLWNLEISDQCFNIVDMKPSNMDDL 266 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (409)
....+...+.+|+|+|+.++. . .++ .|++||+. .+.... +..+
T Consensus 244 ------------------------~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~-~g~~~~--------lt~~ 290 (433)
T PRK04922 244 ------------------------ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG-SRQLTR--------LTNH 290 (433)
T ss_pred ------------------------ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC-CCCeEE--------CccC
Confidence 112223346799999998764 3 444 69999998 444332 3334
Q ss_pred cCceEEEEEeCCCCCEEEEEe-CCCe--EEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290 267 TEVITSAEFHPIYCNLLAYSS-SRGF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (409)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~s~s-~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 343 (409)
.......+|+|+| +.|+..+ .+|. |.++|+.+++. +.+.. +......++|+|||++|+
T Consensus 291 ~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~~g~~-----~~lt~-------------~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 291 FGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAASGGSA-----ERLTF-------------QGNYNARASVSPDGKKIA 351 (433)
T ss_pred CCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCe-----EEeec-------------CCCCccCEEECCCCCEEE
Confidence 4455678999999 8777665 3444 66667665542 11111 012344689999999998
Q ss_pred Eee-c---CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290 344 SRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR 405 (409)
Q Consensus 344 sg~-~---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d 405 (409)
..+ + ..|.+||+.. ++.. .+... ... ....|+|||++|+..+.+
T Consensus 352 ~~~~~~~~~~I~v~d~~~-g~~~-~Lt~~-~~~---------------~~p~~spdG~~i~~~s~~ 399 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLST-GSVR-TLTPG-SLD---------------ESPSFAPNGSMVLYATRE 399 (433)
T ss_pred EEECCCCceeEEEEECCC-CCeE-ECCCC-CCC---------------CCceECCCCCEEEEEEec
Confidence 653 2 3699999874 4433 33322 121 268999999988876654
No 222
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.58 E-value=1.1e-13 Score=112.73 Aligned_cols=275 Identities=14% Similarity=0.158 Sum_probs=157.8
Q ss_pred CCcEEEEEECCCCCEEEEE-ecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 32 VDIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
-+.|.-+.|..|..+++++ ..++.|.+|++...+ ....+....
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe---------------------------w~ckIdeg~--------- 91 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE---------------------------WYCKIDEGQ--------- 91 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecce---------------------------eEEEeccCC---------
Confidence 3678888999888776655 477899999987544 334444444
Q ss_pred eeccceEEEEEEecCCCC-EEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290 111 EIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (409)
+++.+++| ||||+ .|.+...|-.|.+|.+.+.+...+.... ...-...+++++.+.+...
T Consensus 92 ---agls~~~W--SPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK--------------~~~kg~~f~~dg~f~ai~s 152 (447)
T KOG4497|consen 92 ---AGLSSISW--SPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPK--------------TNVKGYAFHPDGQFCAILS 152 (447)
T ss_pred ---CcceeeeE--CCCcceEeeeecceeEEEEEEeccceeEEecccc--------------cCceeEEECCCCceeeeee
Confidence 78999999 89994 5567788999999999887654432110 0111222334444444333
Q ss_pred ccccc-eeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe---cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290 190 WTENM-ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (409)
Q Consensus 190 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~---~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (409)
..... .+.+. ....-..++.+ .-..-..+.+.|+|||..|+.= -+-.|..|...
T Consensus 153 RrDCkdyv~i~---~c~~W~ll~~f-~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~------------------ 210 (447)
T KOG4497|consen 153 RRDCKDYVQIS---SCKAWILLKEF-KLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG------------------ 210 (447)
T ss_pred cccHHHHHHHH---hhHHHHHHHhc-CCCcccccCceECCCCcEEEEecchhhheeeeeeec------------------
Confidence 21000 01110 00111122222 3334456789999999777652 23333322221
Q ss_pred ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccc---------------------c-------c----cccccc
Q 015290 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH---------------------S-------A----RILRDA 313 (409)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~---------------------~-------~----~~~~~~ 313 (409)
-.+..++|+|.+ ++|+.|+.|+.+|+.+--+.+.... . + ..++.|
T Consensus 211 --lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~ 287 (447)
T KOG4497|consen 211 --LGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAH 287 (447)
T ss_pred --cceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccC
Confidence 346788999998 9999999999988865433211000 0 0 000000
Q ss_pred -----------ccccCCc------ccccccccceeeeEeccCCCEEEEeec---CeEEEEEccCCCcceEEEecccCccc
Q 015290 314 -----------AESHGSK------SFFTEIIASISDIKFANDGQHLLSRDY---MNLKLWDIRMDSTPVATFKIHEHLRP 373 (409)
Q Consensus 314 -----------~~~~~~~------~~~~~~~~~i~~~~~s~~g~~l~sg~~---~~v~iwd~~~~~~~~~~~~~~~~~~~ 373 (409)
...|... +-+......+..++|++|..|+++-.| +.+-+||++. .+....+. ...++
T Consensus 288 ~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~-l~l~avLi-Qk~pi- 364 (447)
T KOG4497|consen 288 IWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN-LKLHAVLI-QKHPI- 364 (447)
T ss_pred ccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh-hhhhhhhh-hccce-
Confidence 0000000 111222346778999999999999865 8999999984 44333332 23332
Q ss_pred ccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290 374 KLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (409)
Q Consensus 374 ~~~~~~~~~~~~~v~~~~~spdg~~l~s~s 403 (409)
+...|+|....|+.+.
T Consensus 365 --------------raf~WdP~~prL~vct 380 (447)
T KOG4497|consen 365 --------------RAFEWDPGRPRLVVCT 380 (447)
T ss_pred --------------eEEEeCCCCceEEEEc
Confidence 5788888877666543
No 223
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.58 E-value=3.5e-14 Score=115.69 Aligned_cols=216 Identities=18% Similarity=0.248 Sum_probs=140.2
Q ss_pred EEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccce
Q 015290 37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (409)
Q Consensus 37 ~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 116 (409)
-++|||+|+|+|+++.- .+.|-|.++-+.. ..+.. -+.|
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~---------------------------qlf~c-------------ldki 51 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLH---------------------------QLFLC-------------LDKI 51 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHH---------------------------HHHHH-------------HHHh
Confidence 46899999999999865 7888887765531 11111 0578
Q ss_pred EEEEEEecCCCCEEEE-EeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccce
Q 015290 117 NRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (409)
Q Consensus 117 ~~l~~~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (409)
.-|.| +.|..+++. +..|+.|.+|++...+.....
T Consensus 52 ~yieW--~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI------------------------------------------ 87 (447)
T KOG4497|consen 52 VYIEW--KADSCHILCVAYKDPKVQVWSLVQPEWYCKI------------------------------------------ 87 (447)
T ss_pred hheee--eccceeeeeeeeccceEEEEEeecceeEEEe------------------------------------------
Confidence 88999 577766555 478889999999876654332
Q ss_pred eEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEE-Ee-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEE
Q 015290 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (409)
Q Consensus 196 i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 273 (409)
....+.+.++.|+|+|+.++ +. -+-+|.+|.+. +...... +-.+..+..+
T Consensus 88 -------------------deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~-t~~~~~~--------~~pK~~~kg~ 139 (447)
T KOG4497|consen 88 -------------------DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLN-TQKGYLL--------PHPKTNVKGY 139 (447)
T ss_pred -------------------ccCCCcceeeeECCCcceEeeeecceeEEEEEEec-cceeEEe--------cccccCceeE
Confidence 34556788999999996665 45 89999999998 4444432 2223456889
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec---CeE
Q 015290 274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---MNL 350 (409)
Q Consensus 274 ~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~---~~v 350 (409)
+|+|+| ++.+.+++......+.+..-+ .....+.+. -..-..+.+.|+|||..||+-.. -.|
T Consensus 140 ~f~~dg-~f~ai~sRrDCkdyv~i~~c~-~W~ll~~f~-------------~dT~DltgieWsPdg~~laVwd~~Leykv 204 (447)
T KOG4497|consen 140 AFHPDG-QFCAILSRRDCKDYVQISSCK-AWILLKEFK-------------LDTIDLTGIEWSPDGNWLAVWDNVLEYKV 204 (447)
T ss_pred EECCCC-ceeeeeecccHHHHHHHHhhH-HHHHHHhcC-------------CCcccccCceECCCCcEEEEecchhhhee
Confidence 999999 888877654322222222110 000011111 12346788999999987765431 223
Q ss_pred EEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 351 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
..|... .+ +..++|+|.+++|+.|+.|+.+
T Consensus 205 ~aYe~~------------lG----------------~k~v~wsP~~qflavGsyD~~l 234 (447)
T KOG4497|consen 205 YAYERG------------LG----------------LKFVEWSPCNQFLAVGSYDQML 234 (447)
T ss_pred eeeeec------------cc----------------eeEEEeccccceEEeeccchhh
Confidence 322221 12 1479999999999999999865
No 224
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.57 E-value=2e-14 Score=122.18 Aligned_cols=266 Identities=13% Similarity=0.116 Sum_probs=171.9
Q ss_pred cEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceec
Q 015290 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (409)
Q Consensus 34 ~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (409)
.-..+.++.+|++|+.|+..|.|-.+|..++.+ ..++.--
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L---------------------------~~Ei~v~------------- 170 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL---------------------------HFEINVM------------- 170 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeeccccee---------------------------eeeeehh-------------
Confidence 345788999999999999999999999998874 2222222
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (409)
..|.++.|. .+.++|++ ...+.+.|||-..-++.++... ..+....+-+---.++.++ ..
T Consensus 171 Etv~Dv~~L--Hneq~~AV-AQK~y~yvYD~~GtElHClk~~---------------~~v~rLeFLPyHfLL~~~~--~~ 230 (545)
T KOG1272|consen 171 ETVRDVTFL--HNEQFFAV-AQKKYVYVYDNNGTELHCLKRH---------------IRVARLEFLPYHFLLVAAS--EA 230 (545)
T ss_pred hhhhhhhhh--cchHHHHh-hhhceEEEecCCCcEEeehhhc---------------Cchhhhcccchhheeeecc--cC
Confidence 578888884 44444444 4557788998776655544321 1111111111112222222 25
Q ss_pred ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEE
Q 015290 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (409)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (409)
|.++.-|+.+ ++.+..+ ..-.+.+..|+-+|-.-.+-+| .+|+|.+|.........+ +..|.++|.+
T Consensus 231 G~L~Y~DVS~---GklVa~~-~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK--------iLcH~g~V~s 298 (545)
T KOG1272|consen 231 GFLKYQDVST---GKLVASI-RTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK--------ILCHRGPVSS 298 (545)
T ss_pred CceEEEeech---hhhhHHH-HccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH--------HHhcCCCcce
Confidence 6677777755 4444443 4455677888999988888899 999999999984333333 5779999999
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEE
Q 015290 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKL 352 (409)
Q Consensus 273 ~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~i 352 (409)
+++.++| +|++|.+.|..++|||+|+-... ..+.. ..+...+++|..| +||.+-...|.|
T Consensus 299 iAv~~~G-~YMaTtG~Dr~~kIWDlR~~~ql----~t~~t--------------p~~a~~ls~Sqkg-lLA~~~G~~v~i 358 (545)
T KOG1272|consen 299 IAVDRGG-RYMATTGLDRKVKIWDLRNFYQL----HTYRT--------------PHPASNLSLSQKG-LLALSYGDHVQI 358 (545)
T ss_pred EEECCCC-cEEeecccccceeEeeecccccc----ceeec--------------CCCcccccccccc-ceeeecCCeeee
Confidence 9999999 99999999999999999985421 11111 1356778888766 555554478899
Q ss_pred EEccCCC--cceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEccc
Q 015290 353 WDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (409)
Q Consensus 353 wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~ 404 (409)
|.=...+ ..-..+..|.-. -.|..+.|.|-...|-.|-.
T Consensus 359 w~d~~~~s~~~~~pYm~H~~~-------------~~V~~l~FcP~EDvLGIGH~ 399 (545)
T KOG1272|consen 359 WKDALKGSGHGETPYMNHRCG-------------GPVEDLRFCPYEDVLGIGHA 399 (545)
T ss_pred ehhhhcCCCCCCcchhhhccC-------------cccccceeccHHHeeecccc
Confidence 9532211 222222223221 12358888887665554443
No 225
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.57 E-value=2.5e-13 Score=117.64 Aligned_cols=143 Identities=18% Similarity=0.237 Sum_probs=103.5
Q ss_pred ccceeEEEeCCCCC-eEEEe-cCCeEEEEEccCCC-------------ceeeeeecC-------CCcCcCccCceEEEEE
Q 015290 218 DFNINSISNNSDCE-TFVSA-DDLRINLWNLEISD-------------QCFNIVDMK-------PSNMDDLTEVITSAEF 275 (409)
Q Consensus 218 ~~~v~~l~~~~~~~-~l~~~-~d~~i~lwd~~~~~-------------~~~~~~~~~-------~~~~~~~~~~v~~~~~ 275 (409)
+..++|+.|-|.+. .++.+ .+|.+++||..... ..+.+..-+ ...+.--.+.|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 36788999988644 44455 89999999764211 111110000 0011122457889999
Q ss_pred eCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEE
Q 015290 276 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWD 354 (409)
Q Consensus 276 ~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd 354 (409)
+||| ++||+.+.||.+||||..+.++. ..+. ..-+.+.|++|||||+||++|++ .-|.||.
T Consensus 299 S~DG-~~LA~VSqDGfLRvF~fdt~eLl----g~mk-------------SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 299 SPDG-KYLATVSQDGFLRIFDFDTQELL----GVMK-------------SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWS 360 (636)
T ss_pred cCCC-ceEEEEecCceEEEeeccHHHHH----HHHH-------------hhccceEEEEEcCCccEEEecCCcceEEEEE
Confidence 9999 99999999999999999886542 2221 11347999999999999999985 9999999
Q ss_pred ccCCCcceEEEecccCcccccccccCCCCccceeeEEEcC
Q 015290 355 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 394 (409)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 394 (409)
+.. ++.+..-.+|..++ ..|+|.|
T Consensus 361 f~e-rRVVARGqGHkSWV---------------s~VaFDp 384 (636)
T KOG2394|consen 361 FEE-RRVVARGQGHKSWV---------------SVVAFDP 384 (636)
T ss_pred ecc-ceEEEeccccccce---------------eeEeecc
Confidence 974 89999999999998 5888886
No 226
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.56 E-value=1.7e-13 Score=118.72 Aligned_cols=163 Identities=10% Similarity=0.204 Sum_probs=105.4
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (409)
..|+++.|.| -+...|+.+-.+|.+.++|.....-..-..+. ...++..+
T Consensus 220 tsvT~ikWvp-g~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~----------~~k~~~~f------------------- 269 (636)
T KOG2394|consen 220 SSVTCIKWVP-GSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ----------ALKDGDQF------------------- 269 (636)
T ss_pred cceEEEEEEe-CCCceEEEEEecCceEEeeccccccCCCCccc----------ccCCCCee-------------------
Confidence 6899999986 45557778888899999987321100000000 00000000
Q ss_pred ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEE
Q 015290 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (409)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (409)
.|..|.-.. ...++..+ .--.+.|+..+|+|||++||+. .||.++|+|.. ....+.+ ++..-+...|
T Consensus 270 -~i~t~ksk~--~rNPv~~w-~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fd-t~eLlg~-------mkSYFGGLLC 337 (636)
T KOG2394|consen 270 -AILTSKSKK--TRNPVARW-HIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFD-TQELLGV-------MKSYFGGLLC 337 (636)
T ss_pred -EEeeeeccc--cCCcccee-EeccccccceeEcCCCceEEEEecCceEEEeecc-HHHHHHH-------HHhhccceEE
Confidence 111221111 11222222 2233488999999999999998 99999999998 4444443 3444567899
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEec
Q 015290 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (409)
Q Consensus 273 ~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 336 (409)
++|+||| +++++|+.|.-|.||.+...+. +-.+ .+|..+|..++|.
T Consensus 338 vcWSPDG-KyIvtGGEDDLVtVwSf~erRV------VARG-----------qGHkSWVs~VaFD 383 (636)
T KOG2394|consen 338 VCWSPDG-KYIVTGGEDDLVTVWSFEERRV------VARG-----------QGHKSWVSVVAFD 383 (636)
T ss_pred EEEcCCc-cEEEecCCcceEEEEEeccceE------EEec-----------cccccceeeEeec
Confidence 9999999 9999999999999999987643 1222 4567788888887
No 227
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.56 E-value=1.7e-14 Score=130.96 Aligned_cols=238 Identities=13% Similarity=0.156 Sum_probs=160.5
Q ss_pred cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (409)
--+|.+.|+.++.+....++|+++.|..|++|.+.++. ++..++||+
T Consensus 228 ~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~---------------------------pvsvLrght------ 274 (1113)
T KOG0644|consen 228 CRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA---------------------------PVSVLRGHT------ 274 (1113)
T ss_pred CCCCccccchhccchhhhhhhhcccCceEEEEecCCCc---------------------------hHHHHhccc------
Confidence 34599999999999999999999999999999999887 567889999
Q ss_pred ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (409)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
++|++|+| +|-. +.+.||++++||.+-. ...... .+ ........+.+..+.....-..+
T Consensus 275 ------gavtaiaf--sP~~----sss~dgt~~~wd~r~~-~~~y~p---rp-----~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 275 ------GAVTAIAF--SPRA----SSSDDGTCRIWDARLE-PRIYVP---RP-----LKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred ------cceeeecc--Cccc----cCCCCCceEecccccc-ccccCC---CC-----CCcccccceeeeecccccccccc
Confidence 99999999 4443 7789999999998711 111100 00 00001111111111111122222
Q ss_pred ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (409)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (409)
++ .++.-+.|.+.. +..+...+.-+..+.+ ..+.+++ .+-.+++|++. .+...+. +.+
T Consensus 334 gs--~d~ea~n~e~~~----------l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~-~g~l~H~-------l~g 393 (1113)
T KOG0644|consen 334 GS--RDGEARNHEFEQ----------LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY-TGQLLHN-------LMG 393 (1113)
T ss_pred cc--CCcccccchhhH----------hhhhccceEEEeccccccccceeeeeeeEeeeeecc-cchhhhh-------hcc
Confidence 22 244444444322 0122222222233323 2456667 88899999998 7776665 688
Q ss_pred ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (409)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg 345 (409)
|...++.+.++|-++....+++.||...|||+-.+... +.+.. + ...+...+||+||+.++..
T Consensus 394 hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi----k~y~~------------g-h~kl~d~kFSqdgts~~ls 456 (1113)
T KOG0644|consen 394 HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI----KHYFI------------G-HGKLVDGKFSQDGTSIALS 456 (1113)
T ss_pred cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcc----eeeec------------c-cceeeccccCCCCceEecC
Confidence 99999999999998788889999999999999887542 22222 1 2467788999999999988
Q ss_pred ec-CeEEEEEcc
Q 015290 346 DY-MNLKLWDIR 356 (409)
Q Consensus 346 ~~-~~v~iwd~~ 356 (409)
.+ |.++|....
T Consensus 457 d~hgql~i~g~g 468 (1113)
T KOG0644|consen 457 DDHGQLYILGTG 468 (1113)
T ss_pred CCCCceEEeccC
Confidence 87 999999864
No 228
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=1.2e-12 Score=109.27 Aligned_cols=215 Identities=14% Similarity=0.148 Sum_probs=146.1
Q ss_pred CcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccccee
Q 015290 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (409)
Q Consensus 33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (409)
.+|..++.. || .|++|-.+|.+.+|....+... -..+..+..+
T Consensus 106 ~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~h-----------------------ss~l~~la~g------------ 148 (412)
T KOG3881|consen 106 KSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLH-----------------------SSKLIKLATG------------ 148 (412)
T ss_pred ccccchhhc-CC-EEEEEecCCcEEEEeccCCccc-----------------------cccceeeecC------------
Confidence 344444433 33 5777888999999998865520 0112223333
Q ss_pred ccceEEEEEEecCCCCEEEEEeCC--CeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 113 EEKINRVRWCAAPNGSMFILSTND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 113 ~~~v~~l~~~~s~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
..+..+.-++ .+...+++|+.. +.+++||+.+.+.....+-.... .
T Consensus 149 -~g~~~~r~~~-~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD------------~------------------ 196 (412)
T KOG3881|consen 149 -PGLYDVRQTD-TDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPND------------R------------------ 196 (412)
T ss_pred -CceeeeccCC-CCCceEecCchhcccceeeeecccceeeeeccCCCCc------------c------------------
Confidence 3566666532 333456668888 88999999887433321100000 0
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCC--CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (409)
-+-.+.+|+ +.+.|-+. ...|+++ .-+.+++||.+..+.++..+ .-..
T Consensus 197 -L~LrVPvW~---------------------tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~f-------d~~E 247 (412)
T KOG3881|consen 197 -LGLRVPVWI---------------------TDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQF-------DFLE 247 (412)
T ss_pred -ccceeeeee---------------------ccceecCCCCCceEEEEecceeEEEecCcccCcceeEe-------cccc
Confidence 011344443 45566655 6788998 99999999999777777764 3345
Q ss_pred CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-
Q 015290 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (409)
Q Consensus 268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~- 346 (409)
.+++++...|.+ +++++|..-|.+..||++.+++.. .. +.+..+.|+++..+|.+++||+++
T Consensus 248 ~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl~g---~~-------------~kg~tGsirsih~hp~~~~las~GL 310 (412)
T KOG3881|consen 248 NPISSTGLTPSG-NFIYTGNTKGQLAKFDLRGGKLLG---CG-------------LKGITGSIRSIHCHPTHPVLASCGL 310 (412)
T ss_pred CcceeeeecCCC-cEEEEecccchhheecccCceeec---cc-------------cCCccCCcceEEEcCCCceEEeecc
Confidence 789999999999 999999999999999999987532 11 233467899999999999999987
Q ss_pred cCeEEEEEccCCCcceE
Q 015290 347 YMNLKLWDIRMDSTPVA 363 (409)
Q Consensus 347 ~~~v~iwd~~~~~~~~~ 363 (409)
|..|||+|+++ .+++.
T Consensus 311 DRyvRIhD~kt-rkll~ 326 (412)
T KOG3881|consen 311 DRYVRIHDIKT-RKLLH 326 (412)
T ss_pred ceeEEEeeccc-chhhh
Confidence 79999999986 44443
No 229
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.56 E-value=1.1e-12 Score=105.50 Aligned_cols=110 Identities=20% Similarity=0.328 Sum_probs=82.0
Q ss_pred cceEEEEEEecCCCCEEEEE--eCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290 114 EKINRVRWCAAPNGSMFILS--TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (409)
++|.+++| +|+|+.|++. ..++.|.+||++.....
T Consensus 60 ~~I~~~~W--sP~g~~favi~g~~~~~v~lyd~~~~~i~----------------------------------------- 96 (194)
T PF08662_consen 60 GPIHDVAW--SPNGNEFAVIYGSMPAKVTLYDVKGKKIF----------------------------------------- 96 (194)
T ss_pred CceEEEEE--CcCCCEEEEEEccCCcccEEEcCcccEeE-----------------------------------------
Confidence 57999999 7999987665 45678999999622111
Q ss_pred ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-c---CCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (409)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~---d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (409)
.+ +...++.+.|+|+|++|+++ . .|.+.+||.+ ..+.+.. ..|
T Consensus 97 --------------------~~---~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~-~~~~i~~--------~~~- 143 (194)
T PF08662_consen 97 --------------------SF---GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR-KKKKIST--------FEH- 143 (194)
T ss_pred --------------------ee---cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECC-CCEEeec--------ccc-
Confidence 11 23456789999999999986 3 4679999999 5555543 123
Q ss_pred CceEEEEEeCCCCCEEEEEeC------CCeEEEEeCCCc
Q 015290 268 EVITSAEFHPIYCNLLAYSSS------RGFVRLVDMRQS 300 (409)
Q Consensus 268 ~~v~~~~~~p~~~~~l~s~s~------dg~i~iwd~~~~ 300 (409)
..++.++|+|+| ++|+++.. |+.++||+....
T Consensus 144 ~~~t~~~WsPdG-r~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 144 SDATDVEWSPDG-RYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CcEEEEEEcCCC-CEEEEEEeccceeccccEEEEEecCe
Confidence 347899999999 98888763 788999998654
No 230
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.53 E-value=7.2e-12 Score=110.87 Aligned_cols=280 Identities=13% Similarity=0.098 Sum_probs=148.5
Q ss_pred EEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccc
Q 015290 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (409)
Q Consensus 36 ~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (409)
..+.|+|||+++++++.||.|.++|+.+.+. +.+++.. ..
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~---------------------------v~~i~~G-------------~~ 79 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKV---------------------------VATIKVG-------------GN 79 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSE---------------------------EEEEE-S-------------SE
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccE---------------------------EEEEecC-------------CC
Confidence 4478999999999999999999999998773 4444433 35
Q ss_pred eEEEEEEecCCCCEEEEE-eCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc-eeeccccccc
Q 015290 116 INRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYHLEWTEN 193 (409)
Q Consensus 116 v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 193 (409)
..++++ |+||++++++ ..++.+.++|..+.+..+.......+. ............++... ++.... ..
T Consensus 80 ~~~i~~--s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~------~~~~~Rv~aIv~s~~~~~fVv~lk--d~ 149 (369)
T PF02239_consen 80 PRGIAV--SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV------DGPESRVAAIVASPGRPEFVVNLK--DT 149 (369)
T ss_dssp EEEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T------TTS---EEEEEE-SSSSEEEEEET--TT
T ss_pred cceEEE--cCCCCEEEEEecCCCceeEeccccccceeecccccccc------cccCCCceeEEecCCCCEEEEEEc--cC
Confidence 778999 8999999877 468999999999887776554221110 00111122222222222 222222 13
Q ss_pred ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccCceE
Q 015290 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (409)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (409)
+.+.+-|....... .... ...........|+|++++++.+ .++.|-++|.. .+.....++... ..|.....
T Consensus 150 ~~I~vVdy~d~~~~-~~~~--i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~-~~k~v~~i~~g~---~p~~~~~~ 222 (369)
T PF02239_consen 150 GEIWVVDYSDPKNL-KVTT--IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK-TGKLVALIDTGK---KPHPGPGA 222 (369)
T ss_dssp TEEEEEETTTSSCE-EEEE--EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT-TTEEEEEEE-SS---SBEETTEE
T ss_pred CeEEEEEecccccc-ceee--ecccccccccccCcccceeeecccccceeEEEeec-cceEEEEeeccc---cccccccc
Confidence 45555565443111 1111 2233456678999999988775 78899999998 565555544321 22333333
Q ss_pred EEEEeCCC--------C-CEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEE
Q 015290 272 SAEFHPIY--------C-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (409)
Q Consensus 272 ~~~~~p~~--------~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 342 (409)
.+ .+|.. . ...++.-....+.+||..+.+. ++.+.. ...+ .-+..+|+++++
T Consensus 223 ~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv----v~~I~~-------------~G~g-lFi~thP~s~~v 283 (369)
T PF02239_consen 223 NF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV----VKTIPT-------------QGGG-LFIKTHPDSRYV 283 (369)
T ss_dssp EE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSE----EEEEE--------------SSSS---EE--TT-SEE
T ss_pred cc-cCCCcceEEeeccccceecccccCCccccchhhcCeE----EEEEEC-------------CCCc-ceeecCCCCccE
Confidence 22 12221 0 1221222222445666666543 233332 1223 667889999999
Q ss_pred EEe----ec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290 343 LSR----DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRR 406 (409)
Q Consensus 343 ~sg----~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg 406 (409)
.+. .+ +.|.++|.++ .+.+..+....... +..+.|++||+++..+..++
T Consensus 284 wvd~~~~~~~~~v~viD~~t-l~~~~~i~~~~~~~--------------~~h~ef~~dG~~v~vS~~~~ 337 (369)
T PF02239_consen 284 WVDTFLNPDADTVQVIDKKT-LKVVKTITPGPGKR--------------VVHMEFNPDGKEVWVSVWDG 337 (369)
T ss_dssp EEE-TT-SSHT-EEEEECCG-TEEEE-HHHHHT----------------EEEEEE-TTSSEEEEEEE--
T ss_pred EeeccCCCCCceEEEEECcC-cceeEEEeccCCCc--------------EeccEECCCCCEEEEEEecC
Confidence 987 35 9999999986 55555554333310 14899999999877665554
No 231
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=6e-12 Score=115.62 Aligned_cols=206 Identities=16% Similarity=0.178 Sum_probs=126.8
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecC---CeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290 29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (409)
Q Consensus 29 ~~h~~~v~~v~~~~~~~~la~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (409)
..+.+.+....|+|||+.||..+.+ ..|.+|++.+++. ..+....
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~----------------------------~~l~~~~---- 242 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR----------------------------EQITNFE---- 242 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE----------------------------EEccCCC----
Confidence 3567789999999999999877644 3688889887653 1111111
Q ss_pred ccccceeccceEEEEEEecCCCCEEEE-EeCCC--eEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCC
Q 015290 106 YLKSLEIEEKINRVRWCAAPNGSMFIL-STNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (409)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s-~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (409)
+.+....| +|||+.|+. .+.++ .|.+||+.++....+
T Consensus 243 --------g~~~~~~~--SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l------------------------------ 282 (430)
T PRK00178 243 --------GLNGAPAW--SPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV------------------------------ 282 (430)
T ss_pred --------CCcCCeEE--CCCCCEEEEEEccCCCceEEEEECCCCCeEEc------------------------------
Confidence 33446889 799998874 44444 577778776654332
Q ss_pred ceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCC--eEEEEEccCCCceeeeeec
Q 015290 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDM 258 (409)
Q Consensus 183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~--~i~lwd~~~~~~~~~~~~~ 258 (409)
..+........|+|+|+.++.. .++ .|+++++. .++.....
T Consensus 283 --------------------------------t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~-~g~~~~lt-- 327 (430)
T PRK00178 283 --------------------------------TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN-GGRAERVT-- 327 (430)
T ss_pred --------------------------------ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEee--
Confidence 1222334457899999987754 444 56667776 44433221
Q ss_pred CCCcCcCccCceEEEEEeCCCCCEEEEEeCC-C--eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEe
Q 015290 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-G--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (409)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 335 (409)
..+ .......|+|+| +.++..+.+ + .|.+||+.+++. +.+.. ........|
T Consensus 328 ----~~~--~~~~~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~-----~~lt~--------------~~~~~~p~~ 381 (430)
T PRK00178 328 ----FVG--NYNARPRLSADG-KTLVMVHRQDGNFHVAAQDLQRGSV-----RILTD--------------TSLDESPSV 381 (430)
T ss_pred ----cCC--CCccceEECCCC-CEEEEEEccCCceEEEEEECCCCCE-----EEccC--------------CCCCCCceE
Confidence 111 223457899999 777766543 3 578889887653 22222 011224689
Q ss_pred ccCCCEEEEee-c---CeEEEEEccCCCcceEEEeccc
Q 015290 336 ANDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFKIHE 369 (409)
Q Consensus 336 s~~g~~l~sg~-~---~~v~iwd~~~~~~~~~~~~~~~ 369 (409)
+|||++++..+ + ..|.++++. +.....+..+.
T Consensus 382 spdg~~i~~~~~~~g~~~l~~~~~~--g~~~~~l~~~~ 417 (430)
T PRK00178 382 APNGTMLIYATRQQGRGVLMLVSIN--GRVRLPLPTAQ 417 (430)
T ss_pred CCCCCEEEEEEecCCceEEEEEECC--CCceEECcCCC
Confidence 99999988654 2 446666764 55555555443
No 232
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.51 E-value=1.3e-11 Score=100.51 Aligned_cols=239 Identities=13% Similarity=0.148 Sum_probs=147.4
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc---
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW--- 190 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 190 (409)
....+++| +.|...++.|..+| .+||+.+--+........... ..+....-...++.... |..
T Consensus 6 ~~~lsvs~--NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G--~~~veMLfR~N~laLVG---------Gg~~pk 71 (346)
T KOG2111|consen 6 PKTLSVSF--NQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGG--FKIVEMLFRSNYLALVG---------GGSRPK 71 (346)
T ss_pred CceeEEEE--ccCCceEEEEecCc-eEEEecCchhhhhhhccccCc--hhhhhHhhhhceEEEec---------CCCCCC
Confidence 45667999 68888888887776 899988652221111100000 00000000111111111 111
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (409)
-.-+.+-+||= ....++..+ .-..+|.++.+.++ .+++...+.|++|.....-+.+..++.. ......
T Consensus 72 y~pNkviIWDD---~k~~~i~el--~f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~-----~NPkGl 139 (346)
T KOG2111|consen 72 YPPNKVIIWDD---LKERCIIEL--SFNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETR-----SNPKGL 139 (346)
T ss_pred CCCceEEEEec---ccCcEEEEE--EeccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecc-----cCCCce
Confidence 12337899993 224454443 45678899988754 5777778899999998444555554322 111223
Q ss_pred EEEEEeCCCCCEEEEEe-CCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-C
Q 015290 271 TSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 348 (409)
Q Consensus 271 ~~~~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~ 348 (409)
.+++=..+. .+||.-+ .-|.|.|-|+...+.. ...+..+|.+.|.+++.+-+|..|||++. |
T Consensus 140 C~~~~~~~k-~~LafPg~k~GqvQi~dL~~~~~~---------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG 203 (346)
T KOG2111|consen 140 CSLCPTSNK-SLLAFPGFKTGQVQIVDLASTKPN---------------APSIINAHDSDIACVALNLQGTLVATASTKG 203 (346)
T ss_pred EeecCCCCc-eEEEcCCCccceEEEEEhhhcCcC---------------CceEEEcccCceeEEEEcCCccEEEEeccCc
Confidence 333333333 4555433 5689999998764321 12334667899999999999999999986 4
Q ss_pred -eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 349 -NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 349 -~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
-|||||..+ |..+..+......- .|.+++||||+.+||++|+-|++
T Consensus 204 TLIRIFdt~~-g~~l~E~RRG~d~A-------------~iy~iaFSp~~s~LavsSdKgTl 250 (346)
T KOG2111|consen 204 TLIRIFDTED-GTLLQELRRGVDRA-------------DIYCIAFSPNSSWLAVSSDKGTL 250 (346)
T ss_pred EEEEEEEcCC-CcEeeeeecCCchh-------------eEEEEEeCCCccEEEEEcCCCeE
Confidence 589999986 88888887544431 12599999999999999999875
No 233
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=6.8e-12 Score=114.89 Aligned_cols=206 Identities=15% Similarity=0.161 Sum_probs=124.0
Q ss_pred cCCCcEEEEEECCCCCEEEEEecC-C--eEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290 30 QDVDIVSAIEFDKTGDYLAVGDRG-G--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (409)
Q Consensus 30 ~h~~~v~~v~~~~~~~~la~~~~d-g--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (409)
.+...+.+..|+|||+.|+..+.+ + .|.+||+.+++. +.+..+.
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-------------------------~~lt~~~-------- 261 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-------------------------EKVTSFP-------- 261 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-------------------------EEecCCC--------
Confidence 456688899999999999877543 3 578888877652 1122222
Q ss_pred cccceeccceEEEEEEecCCCCEEEE-EeCCCe--EEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc
Q 015290 107 LKSLEIEEKINRVRWCAAPNGSMFIL-STNDKT--IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (409)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s-~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (409)
+......| +|||+.|+. .+.++. |.++|+.+++...+
T Consensus 262 -------g~~~~~~w--SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~l------------------------------- 301 (448)
T PRK04792 262 -------GINGAPRF--SPDGKKLALVLSKDGQPEIYVVDIATKALTRI------------------------------- 301 (448)
T ss_pred -------CCcCCeeE--CCCCCEEEEEEeCCCCeEEEEEECCCCCeEEC-------------------------------
Confidence 23346789 899998875 455664 66667766544322
Q ss_pred eeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCe--EEEEEccCCCceeeeeecC
Q 015290 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMK 259 (409)
Q Consensus 184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~--i~lwd~~~~~~~~~~~~~~ 259 (409)
..+.......+|+||++.++.. .++. |.++|+. .++.....
T Consensus 302 -------------------------------t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~-~g~~~~Lt--- 346 (448)
T PRK04792 302 -------------------------------TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA-SGKVSRLT--- 346 (448)
T ss_pred -------------------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEEe---
Confidence 1223334567899999988764 4444 5556665 34333221
Q ss_pred CCcCcCccCceEEEEEeCCCCCEEEEEeC-CC--eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEec
Q 015290 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (409)
Q Consensus 260 ~~~~~~~~~~v~~~~~~p~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 336 (409)
..+ ......+|+|+| ++|+..+. ++ .|.++|+.+++. ..+.. ........|+
T Consensus 347 ---~~g--~~~~~~~~SpDG-~~l~~~~~~~g~~~I~~~dl~~g~~-----~~lt~--------------~~~d~~ps~s 401 (448)
T PRK04792 347 ---FEG--EQNLGGSITPDG-RSMIMVNRTNGKFNIARQDLETGAM-----QVLTS--------------TRLDESPSVA 401 (448)
T ss_pred ---cCC--CCCcCeeECCCC-CEEEEEEecCCceEEEEEECCCCCe-----EEccC--------------CCCCCCceEC
Confidence 122 223457899999 77766554 44 455567776643 22222 0112245799
Q ss_pred cCCCEEEEee-c---CeEEEEEccCCCcceEEEecccC
Q 015290 337 NDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFKIHEH 370 (409)
Q Consensus 337 ~~g~~l~sg~-~---~~v~iwd~~~~~~~~~~~~~~~~ 370 (409)
|||++|+... + ..+++++.. +.....+..+..
T Consensus 402 pdG~~I~~~~~~~g~~~l~~~~~~--G~~~~~l~~~~g 437 (448)
T PRK04792 402 PNGTMVIYSTTYQGKQVLAAVSID--GRFKARLPAGQG 437 (448)
T ss_pred CCCCEEEEEEecCCceEEEEEECC--CCceEECcCCCC
Confidence 9999887653 2 347777764 676666665544
No 234
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.50 E-value=1.4e-11 Score=113.09 Aligned_cols=183 Identities=15% Similarity=0.135 Sum_probs=118.4
Q ss_pred cceEEEEEEecCCCCEEEEEeCC---CeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
..+.+.+| +|||++|+.+..+ ..|++||+.+++....
T Consensus 190 ~~~~~p~~--Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-------------------------------------- 229 (417)
T TIGR02800 190 EPILSPAW--SPDGQKLAYVSFESGKPEIYVQDLATGQREKV-------------------------------------- 229 (417)
T ss_pred CceecccC--CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe--------------------------------------
Confidence 56888899 8999999887644 4788999877644322
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEE-e-cCC--eEEEEEccCCCceeeeeecCCCcCcCc
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDL--RINLWNLEISDQCFNIVDMKPSNMDDL 266 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (409)
..+...+.+++|+|+++.|+. . .++ .|++||+. .+.... +..+
T Consensus 230 ------------------------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~-~~~~~~--------l~~~ 276 (417)
T TIGR02800 230 ------------------------ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD-GKQLTR--------LTNG 276 (417)
T ss_pred ------------------------ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC-CCCEEE--------CCCC
Confidence 122234456889999987765 3 443 58888887 443322 2333
Q ss_pred cCceEEEEEeCCCCCEEEEEeC-CC--eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290 267 TEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (409)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 343 (409)
........|+|+| +.|+..+. ++ .|.++|+.+++. ..+.. +......+.|+|+|++|+
T Consensus 277 ~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy~~d~~~~~~-----~~l~~-------------~~~~~~~~~~spdg~~i~ 337 (417)
T TIGR02800 277 PGIDTEPSWSPDG-KSIAFTSDRGGSPQIYMMDADGGEV-----RRLTF-------------RGGYNASPSWSPDGDLIA 337 (417)
T ss_pred CCCCCCEEECCCC-CEEEEEECCCCCceEEEEECCCCCE-----EEeec-------------CCCCccCeEECCCCCEEE
Confidence 3445577899999 77765543 33 577778776542 11211 123566789999999998
Q ss_pred Eeec-C---eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290 344 SRDY-M---NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRR 406 (409)
Q Consensus 344 sg~~-~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg 406 (409)
.++. + .|.+||+.. + ....+...... ...+|+|||++|+..+.++
T Consensus 338 ~~~~~~~~~~i~~~d~~~-~-~~~~l~~~~~~----------------~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 338 FVHREGGGFNIAVMDLDG-G-GERVLTDTGLD----------------ESPSFAPNGRMILYATTRG 386 (417)
T ss_pred EEEccCCceEEEEEeCCC-C-CeEEccCCCCC----------------CCceECCCCCEEEEEEeCC
Confidence 7653 3 788889874 3 33333322211 2578999999988877654
No 235
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.50 E-value=9.3e-12 Score=114.26 Aligned_cols=205 Identities=15% Similarity=0.168 Sum_probs=130.5
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecC---CeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290 29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (409)
Q Consensus 29 ~~h~~~v~~v~~~~~~~~la~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (409)
..+...+.+.+|+|||++||.+..+ ..|.+||+.+++. ..+..+.
T Consensus 186 ~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~----------------------------~~~~~~~---- 233 (417)
T TIGR02800 186 TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR----------------------------EKVASFP---- 233 (417)
T ss_pred ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE----------------------------EEeecCC----
Confidence 3456678999999999999987654 4799999987652 1122233
Q ss_pred ccccceeccceEEEEEEecCCCCEEEEE-eCCC--eEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCC
Q 015290 106 YLKSLEIEEKINRVRWCAAPNGSMFILS-TNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (409)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (409)
+.+.+++| +|||+.|+.. +.++ .|.+|++.++....+
T Consensus 234 --------~~~~~~~~--spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l------------------------------ 273 (417)
T TIGR02800 234 --------GMNGAPAF--SPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL------------------------------ 273 (417)
T ss_pred --------CCccceEE--CCCCCEEEEEECCCCCccEEEEECCCCCEEEC------------------------------
Confidence 45667889 7999877654 4443 577778776544322
Q ss_pred ceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCC--eEEEEEccCCCceeeeeec
Q 015290 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDM 258 (409)
Q Consensus 183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~--~i~lwd~~~~~~~~~~~~~ 258 (409)
..+........|+|+++.|+.. .++ .|+++|+. .+....
T Consensus 274 --------------------------------~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~-~~~~~~---- 316 (417)
T TIGR02800 274 --------------------------------TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD-GGEVRR---- 316 (417)
T ss_pred --------------------------------CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECC-CCCEEE----
Confidence 1122223456899999988764 344 57777776 333322
Q ss_pred CCCcCcCccCceEEEEEeCCCCCEEEEEeCCC---eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEe
Q 015290 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (409)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 335 (409)
+..+......+.|+|+| ++++.++.++ .|.+||+.++.. ..+.. ........|
T Consensus 317 ----l~~~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~~-----~~l~~--------------~~~~~~p~~ 372 (417)
T TIGR02800 317 ----LTFRGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDGGGE-----RVLTD--------------TGLDESPSF 372 (417)
T ss_pred ----eecCCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCCCCe-----EEccC--------------CCCCCCceE
Confidence 22234556788999999 8888877765 788999877542 22222 112345689
Q ss_pred ccCCCEEEEee-c---CeEEEEEccCCCcceEEEecc
Q 015290 336 ANDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFKIH 368 (409)
Q Consensus 336 s~~g~~l~sg~-~---~~v~iwd~~~~~~~~~~~~~~ 368 (409)
+|||++|+..+ + ..+++.+.. ++....+..+
T Consensus 373 spdg~~l~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 407 (417)
T TIGR02800 373 APNGRMILYATTRGGRGVLGLVSTD--GRFRARLPLG 407 (417)
T ss_pred CCCCCEEEEEEeCCCcEEEEEEECC--CceeeECCCC
Confidence 99999888764 2 346666653 5555555433
No 236
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=3e-12 Score=106.88 Aligned_cols=247 Identities=15% Similarity=0.120 Sum_probs=162.7
Q ss_pred CCCcEEEEEECCCCC--EEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290 31 DVDIVSAIEFDKTGD--YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (409)
Q Consensus 31 h~~~v~~v~~~~~~~--~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (409)
....|++++|..+++ .|..++.+..+..+.+...... ++..-+......+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~---------------------s~~~~~~~~~l~~------- 105 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEIS---------------------SSLDDAKTVSLGT------- 105 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccc---------------------ccccccccccccc-------
Confidence 456788888887654 4444446666777766654421 0000011122222
Q ss_pred cceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (409)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (409)
++|..++. .|+ .|++|-.+|.+.+|....+.....
T Consensus 106 -----~~I~gl~~---~dg-~Litc~~sG~l~~~~~k~~d~hss------------------------------------ 140 (412)
T KOG3881|consen 106 -----KSIKGLKL---ADG-TLITCVSSGNLQVRHDKSGDLHSS------------------------------------ 140 (412)
T ss_pred -----ccccchhh---cCC-EEEEEecCCcEEEEeccCCccccc------------------------------------
Confidence 67888876 565 788888899999999875532100
Q ss_pred cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEE-Ee-cC--CeEEEEEccCCCceeeeeecCCC--c
Q 015290 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DD--LRINLWNLEISDQCFNIVDMKPS--N 262 (409)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d--~~i~lwd~~~~~~~~~~~~~~~~--~ 262 (409)
++.. ......+..|.-++..+.++ +| .. ..+.+||++.. .+++..+.. .
T Consensus 141 --------------------~l~~--la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~---~qiw~aKNvpnD 195 (412)
T KOG3881|consen 141 --------------------KLIK--LATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS---KQIWSAKNVPND 195 (412)
T ss_pred --------------------ccee--eecCCceeeeccCCCCCceEecCchhcccceeeeecccc---eeeeeccCCCCc
Confidence 0000 11123455566666655554 46 66 78999999843 333333211 1
Q ss_pred CcCc--cCceEEEEEeCC--CCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccC
Q 015290 263 MDDL--TEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (409)
Q Consensus 263 ~~~~--~~~v~~~~~~p~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 338 (409)
..+. .-+++++.|-+. . ..|++++.-+.+++||.+.++-.. ..+.. -..+++++...|+
T Consensus 196 ~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRRPV---~~fd~-------------~E~~is~~~l~p~ 258 (412)
T KOG3881|consen 196 RLGLRVPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRRPV---AQFDF-------------LENPISSTGLTPS 258 (412)
T ss_pred cccceeeeeeccceecCCCCC-ceEEEEecceeEEEecCcccCcce---eEecc-------------ccCcceeeeecCC
Confidence 1111 246788899887 5 899999999999999999765322 22221 1458999999999
Q ss_pred CCEEEEeec-CeEEEEEccCCCcceEE-EecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 339 GQHLLSRDY-MNLKLWDIRMDSTPVAT-FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 339 g~~l~sg~~-~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
|+++++|.. +.+..+|++. ++.+.. +++..+.+ +++..+|.+++||+|+-|+.|
T Consensus 259 gn~Iy~gn~~g~l~~FD~r~-~kl~g~~~kg~tGsi---------------rsih~hp~~~~las~GLDRyv 314 (412)
T KOG3881|consen 259 GNFIYTGNTKGQLAKFDLRG-GKLLGCGLKGITGSI---------------RSIHCHPTHPVLASCGLDRYV 314 (412)
T ss_pred CcEEEEecccchhheecccC-ceeeccccCCccCCc---------------ceEEEcCCCceEEeeccceeE
Confidence 999999986 9999999996 666655 77777765 699999999999999999865
No 237
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=7.6e-11 Score=103.16 Aligned_cols=101 Identities=17% Similarity=0.212 Sum_probs=77.5
Q ss_pred ccCceEEEEEeCCCCCEEEE--EeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290 266 LTEVITSAEFHPIYCNLLAY--SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (409)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 343 (409)
..++|+++.|+|++ +-|+. |-.--.+.|||++..- ++.. . .++-+++-|+|.|++|+
T Consensus 269 k~GPVhdv~W~~s~-~EF~VvyGfMPAkvtifnlr~~~-------v~df-~------------egpRN~~~fnp~g~ii~ 327 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSG-REFAVVYGFMPAKVTIFNLRGKP-------VFDF-P------------EGPRNTAFFNPHGNIIL 327 (566)
T ss_pred CCCCceEEEECCCC-CEEEEEEecccceEEEEcCCCCE-------eEeC-C------------CCCccceEECCCCCEEE
Confidence 46899999999999 65554 4456689999998742 2222 1 35678899999999988
Q ss_pred Eee--c--CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290 344 SRD--Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR 405 (409)
Q Consensus 344 sg~--~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d 405 (409)
.++ . |.+.|||+.. .+++..+...... -+.|+|||++++|++.-
T Consensus 328 lAGFGNL~G~mEvwDv~n-~K~i~~~~a~~tt-----------------~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 328 LAGFGNLPGDMEVWDVPN-RKLIAKFKAANTT-----------------VFEWSPDGEYFLTATTA 375 (566)
T ss_pred EeecCCCCCceEEEeccc-hhhccccccCCce-----------------EEEEcCCCcEEEEEecc
Confidence 653 3 9999999986 7888888766653 69999999999988753
No 238
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.49 E-value=5.6e-12 Score=119.55 Aligned_cols=194 Identities=15% Similarity=0.249 Sum_probs=127.3
Q ss_pred eeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccc
Q 015290 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (409)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (409)
...+..+..|+ ..|..++.. ++++.+|++||.||+|++|+...-.....
T Consensus 1038 G~lVAhL~Ehs------------~~v~k~a~s-~~~~s~FvsgS~DGtVKvW~~~k~~~~~~------------------ 1086 (1431)
T KOG1240|consen 1038 GILVAHLHEHS------------SAVIKLAVS-SEHTSLFVSGSDDGTVKVWNLRKLEGEGG------------------ 1086 (1431)
T ss_pred ceEeehhhhcc------------ccccceeec-CCCCceEEEecCCceEEEeeehhhhcCcc------------------
Confidence 44566667777 788888886 46668999999999999999864211100
Q ss_pred cCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCC
Q 015290 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS 249 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~ 249 (409)
...+..++ ......+.++...+.++.+|.+ .||.|.+.++...
T Consensus 1087 -----------------------------------s~rS~lty-s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1087 -----------------------------------SARSELTY-SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHY 1130 (1431)
T ss_pred -----------------------------------eeeeeEEE-eccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccc
Confidence 01122222 2355678899999999999999 9999999999831
Q ss_pred -CceeeeeecCCCcCcCccCceEEEEEeCCCCC-EEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccc
Q 015290 250 -DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (409)
Q Consensus 250 -~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (409)
.........+..........|..-+|...... .++.+..-+.|..||+++.... ...+. . .-.
T Consensus 1131 ~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~----w~lk~---~--------~~h 1195 (1431)
T KOG1240|consen 1131 NVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA----WRLKN---Q--------LRH 1195 (1431)
T ss_pred ccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH----Hhhhc---C--------ccc
Confidence 11111111111112222233334444433323 7888888899999999885421 11111 0 013
Q ss_pred cceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEec
Q 015290 328 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKI 367 (409)
Q Consensus 328 ~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~ 367 (409)
+.|++++.+|.+++++.|+. |.+.+||++. +.++..+..
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF-~~~i~sw~~ 1235 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF-RVPILSWEH 1235 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeec-CceeecccC
Confidence 68999999999999999986 9999999996 677766653
No 239
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.48 E-value=9.3e-10 Score=97.68 Aligned_cols=269 Identities=10% Similarity=0.096 Sum_probs=154.9
Q ss_pred CCcEEEEEECCCCCEEEEEec----CCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290 32 VDIVSAIEFDKTGDYLAVGDR----GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (409)
......++++|++++|.+... +|.|..|++..... ..+.+.......
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-----------------------~L~~~~~~~~~g------ 86 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-----------------------TLTLLNSVPSGG------ 86 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-----------------------EEEEEEEEEESS------
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-----------------------eeEEeeeeccCC------
Confidence 345677899999999988876 57899999876421 111222222111
Q ss_pred ccceeccceEEEEEEecCCCCEEEEEe-CCCeEEEEEcCC-ceeeeeec-cCCCcccccccccccccCceeccCCCCCce
Q 015290 108 KSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKE-MDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (409)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~-~d~~i~iwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (409)
.....++. ++++++|+++. .++.|.++++.. +.+..... ...... ............-.+..++++.+
T Consensus 87 ------~~p~~i~~--~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~-g~~~~rq~~~h~H~v~~~pdg~~ 157 (345)
T PF10282_consen 87 ------SSPCHIAV--DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS-GPNPDRQEGPHPHQVVFSPDGRF 157 (345)
T ss_dssp ------SCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE-ESSTTTTSSTCEEEEEE-TTSSE
T ss_pred ------CCcEEEEE--ecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC-CCcccccccccceeEEECCCCCE
Confidence 34567888 79999999886 589999999986 44433211 000000 00000011122233445566665
Q ss_pred eecccccccceeEEEecCCccc-ceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccC-CCce--eeeeec
Q 015290 185 GYHLEWTENMATKIANVGNSVH-ARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEI-SDQC--FNIVDM 258 (409)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~-~~~~--~~~~~~ 258 (409)
++..... ...|.+++++.... -.....+........+.++|+|++++++.. .++.|.++++.. .+.. +..+..
T Consensus 158 v~v~dlG-~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~ 236 (345)
T PF10282_consen 158 VYVPDLG-ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIST 236 (345)
T ss_dssp EEEEETT-TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred EEEEecC-CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeee
Confidence 5554432 33788888865431 111222213445567899999999988765 789999999882 2221 222221
Q ss_pred CCCcCcCccCceEEEEEeCCCCCEEEEE-eCCCeEEEEeCCC--ccccccccccccccccccCCcccccccccceeeeEe
Q 015290 259 KPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (409)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~-s~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 335 (409)
.+....+ ......++++|+| ++|+++ ...+.|.+|++.. +.+ ..+..+.. .....+.+++
T Consensus 237 ~~~~~~~-~~~~~~i~ispdg-~~lyvsnr~~~sI~vf~~d~~~g~l--~~~~~~~~-------------~G~~Pr~~~~ 299 (345)
T PF10282_consen 237 LPEGFTG-ENAPAEIAISPDG-RFLYVSNRGSNSISVFDLDPATGTL--TLVQTVPT-------------GGKFPRHFAF 299 (345)
T ss_dssp CETTSCS-SSSEEEEEE-TTS-SEEEEEECTTTEEEEEEECTTTTTE--EEEEEEEE-------------SSSSEEEEEE
T ss_pred ccccccc-cCCceeEEEecCC-CEEEEEeccCCEEEEEEEecCCCce--EEEEEEeC-------------CCCCccEEEE
Confidence 1111111 2367899999999 665554 4577899999843 332 11111111 0234788999
Q ss_pred ccCCCEEEEee-c-CeEEEEEcc
Q 015290 336 ANDGQHLLSRD-Y-MNLKLWDIR 356 (409)
Q Consensus 336 s~~g~~l~sg~-~-~~v~iwd~~ 356 (409)
+|+|++|+++. + +.|.+|++.
T Consensus 300 s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 300 SPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEE
T ss_pred eCCCCEEEEEecCCCeEEEEEEe
Confidence 99999999886 4 899999885
No 240
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.48 E-value=7.9e-13 Score=104.63 Aligned_cols=170 Identities=14% Similarity=0.218 Sum_probs=120.9
Q ss_pred CCCcEEEEEECC-CCC--EEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290 31 DVDIVSAIEFDK-TGD--YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (409)
Q Consensus 31 h~~~v~~v~~~~-~~~--~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (409)
..+.+.|..+.- +++ +|+.|-.+|.|.+||+.++... +. .+..++.......|+
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~---------~~--------~~~~~kv~~~~ash~------ 205 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI---------IQ--------LPQSSKVESPNASHK------ 205 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCcee---------ec--------cccccccccchhhcc------
Confidence 456777777544 343 4566779999999999987431 00 011222333445666
Q ss_pred ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (409)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
++|.++.|. +....=++++.+..+..|.++.........
T Consensus 206 ------qpvlsldya--s~~~rGisgga~dkl~~~Sl~~s~gslq~~--------------------------------- 244 (323)
T KOG0322|consen 206 ------QPVLSLDYA--SSCDRGISGGADDKLVMYSLNHSTGSLQIR--------------------------------- 244 (323)
T ss_pred ------Ccceeeeec--hhhcCCcCCCccccceeeeeccccCccccc---------------------------------
Confidence 899999994 443344677777888888886432111100
Q ss_pred ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (409)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (409)
.+..-....|..+.+-||++.+|++ .|++|++|..+ +..++.+ +.-|
T Consensus 245 ------------------------~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswr-tl~pLAV-------LkyH 292 (323)
T KOG0322|consen 245 ------------------------KEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWR-TLNPLAV-------LKYH 292 (323)
T ss_pred ------------------------ceEEecCCCccceEEccCCcEEeecccCCcEEEEEec-cCCchhh-------hhhh
Confidence 0001123346788999999999999 99999999999 7777777 6889
Q ss_pred cCceEEEEEeCCCCCEEEEEeCCCeEEEEeC
Q 015290 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (409)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~ 297 (409)
.+.|++++|+|+. .++|+++.|+.|.+|++
T Consensus 293 sagvn~vAfspd~-~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 293 SAGVNAVAFSPDC-ELMAAASKDARISLWKL 322 (323)
T ss_pred hcceeEEEeCCCC-chhhhccCCceEEeeec
Confidence 9999999999997 89999999999999986
No 241
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=7.1e-11 Score=108.59 Aligned_cols=182 Identities=15% Similarity=0.149 Sum_probs=114.8
Q ss_pred cceEEEEEEecCCCCEEEEEeCC---CeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
..+....| +|||+.|+..+.+ ..|.+|++.+++...+.
T Consensus 199 ~~~~~p~w--SpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~------------------------------------- 239 (430)
T PRK00178 199 EPILSPRW--SPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT------------------------------------- 239 (430)
T ss_pred CceeeeeE--CCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc-------------------------------------
Confidence 67889999 8999999876544 36888888776543321
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCC--eEEEEEccCCCceeeeeecCCCcCcCc
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDL 266 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (409)
...+.+...+|+|+|+.|+.. .++ .|++||+. ++.... +..+
T Consensus 240 -------------------------~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~--------lt~~ 285 (430)
T PRK00178 240 -------------------------NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA-SRQLSR--------VTNH 285 (430)
T ss_pred -------------------------CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC-CCCeEE--------cccC
Confidence 111223457899999988753 444 68888887 444332 2334
Q ss_pred cCceEEEEEeCCCCCEEEEEe-CCC--eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290 267 TEVITSAEFHPIYCNLLAYSS-SRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (409)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 343 (409)
........|+|+| +.++..+ .+| .|.++|+.+++. ..+.. . ........|+|||++|+
T Consensus 286 ~~~~~~~~~spDg-~~i~f~s~~~g~~~iy~~d~~~g~~-----~~lt~-----------~--~~~~~~~~~Spdg~~i~ 346 (430)
T PRK00178 286 PAIDTEPFWGKDG-RTLYFTSDRGGKPQIYKVNVNGGRA-----ERVTF-----------V--GNYNARPRLSADGKTLV 346 (430)
T ss_pred CCCcCCeEECCCC-CEEEEEECCCCCceEEEEECCCCCE-----EEeec-----------C--CCCccceEECCCCCEEE
Confidence 4455678999999 7666554 333 577778766542 11111 0 11234578999999998
Q ss_pred Eee-c---CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290 344 SRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR 405 (409)
Q Consensus 344 sg~-~---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d 405 (409)
..+ . ..|.+||+.+ ++ ...+... ... ....|+|||+.|+..+.+
T Consensus 347 ~~~~~~~~~~l~~~dl~t-g~-~~~lt~~-~~~---------------~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 347 MVHRQDGNFHVAAQDLQR-GS-VRILTDT-SLD---------------ESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred EEEccCCceEEEEEECCC-CC-EEEccCC-CCC---------------CCceECCCCCEEEEEEec
Confidence 654 2 3688899875 43 3333221 111 257899999998876654
No 242
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=1.4e-09 Score=90.71 Aligned_cols=278 Identities=12% Similarity=0.153 Sum_probs=172.8
Q ss_pred ceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEec---CCeEEEEeccC--CcCCCCccchhhhhhhcccccccC
Q 015290 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVG--GKNTPNQHISRSELEKQMDFTSTS 87 (409)
Q Consensus 13 ~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~---dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 87 (409)
.|.+...-++........+....+-|+|+|++++|.++-. +|.|--|.++. ++..
T Consensus 20 v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt-------------------- 79 (346)
T COG2706 20 VFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT-------------------- 79 (346)
T ss_pred EEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE--------------------
Confidence 4777655456566666778889999999999999988764 47788888775 3321
Q ss_pred CCceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeC-CCeEEEEEcCC-ceeeeeeccCCCccccccc
Q 015290 88 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRD-QKVKKIKEMDHFPFVSSEN 165 (409)
Q Consensus 88 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~ 165 (409)
.+.....-. .+-..++. +++|++++++.. -|.|.++.++. |.+........
T Consensus 80 -----~ln~~~~~g------------~~p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~-------- 132 (346)
T COG2706 80 -----FLNRQTLPG------------SPPCYVSV--DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK-------- 132 (346)
T ss_pred -----EeeccccCC------------CCCeEEEE--CCCCCEEEEEEccCceEEEEEcccCCccccceeeee--------
Confidence 111111111 23477888 799999988854 47899998865 33322111000
Q ss_pred ccccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEE
Q 015290 166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINL 243 (409)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~l 243 (409)
...... .. ......+....+.|++++|++. .-..|.+
T Consensus 133 ----------------------------------h~g~~p--~~-----rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~ 171 (346)
T COG2706 133 ----------------------------------HTGSGP--HE-----RQESPHVHSANFTPDGRYLVVPDLGTDRIFL 171 (346)
T ss_pred ----------------------------------cCCCCC--Cc-----cccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence 000000 00 1112236678899999999986 5668999
Q ss_pred EEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEe-CCCeEEEEeCCCccccccccccccccccccCCccc
Q 015290 244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (409)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (409)
|++. .+.....-. ..+ ......+.|.|+|++ ++..... .+++|-+|........ ...++.+..-| ..
T Consensus 172 y~~~-dg~L~~~~~---~~v-~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~---~~~lQ~i~tlP---~d 239 (346)
T COG2706 172 YDLD-DGKLTPADP---AEV-KPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGK---FEELQTIDTLP---ED 239 (346)
T ss_pred EEcc-cCccccccc---ccc-CCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCce---EEEeeeeccCc---cc
Confidence 9998 554332211 112 234556899999999 7666554 5899999998874111 12222211111 11
Q ss_pred ccccccceeeeEeccCCCEEEEeec--CeEEEEEccCCCcceEEEec---ccCcccccccccCCCCccceeeEEEcCCCC
Q 015290 323 FTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKI---HEHLRPKLCDLYNNDSIFDKFECSVSGDGL 397 (409)
Q Consensus 323 ~~~~~~~i~~~~~s~~g~~l~sg~~--~~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 397 (409)
|.+ ..+...+.++|||++|.++.- ..|-+|.+...+..+..... +... + +.+.|+|+|+
T Consensus 240 F~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~-P--------------R~F~i~~~g~ 303 (346)
T COG2706 240 FTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQF-P--------------RDFNINPSGR 303 (346)
T ss_pred cCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcC-C--------------ccceeCCCCC
Confidence 221 346778899999999999863 89999988765444443332 2221 1 5899999999
Q ss_pred eEEEcccCC
Q 015290 398 HFATGSYRR 406 (409)
Q Consensus 398 ~l~s~s~dg 406 (409)
+|+++..++
T Consensus 304 ~Liaa~q~s 312 (346)
T COG2706 304 FLIAANQKS 312 (346)
T ss_pred EEEEEccCC
Confidence 999988775
No 243
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=2.3e-10 Score=104.09 Aligned_cols=114 Identities=16% Similarity=0.125 Sum_probs=72.3
Q ss_pred eeEEEeCCCCCeEEEe--cCCeEEEEEccC--CCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC---CeEE
Q 015290 221 INSISNNSDCETFVSA--DDLRINLWNLEI--SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVR 293 (409)
Q Consensus 221 v~~l~~~~~~~~l~~~--~d~~i~lwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d---g~i~ 293 (409)
....+|+|||+.|+.. .+|...+|.+.. .+..... +..+...+....|+||| +.|+..+.+ ..|.
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~-------lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~ 354 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL-------LTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQIC 354 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE-------eccCCCCccceeECCCC-CEEEEEEcCCCCcEEE
Confidence 3567999999988764 566555554431 1222222 23334556788999999 877766543 3689
Q ss_pred EEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe-ec---CeEEEEEccCCCcc
Q 015290 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY---MNLKLWDIRMDSTP 361 (409)
Q Consensus 294 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg-~~---~~v~iwd~~~~~~~ 361 (409)
+||+.+++. ..+.. ....+....|+|||++|+.. .. ..|++||+.. ++.
T Consensus 355 v~dl~~g~~-----~~Lt~-------------~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~-g~~ 407 (428)
T PRK01029 355 VYDLATGRD-----YQLTT-------------SPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT-KKT 407 (428)
T ss_pred EEECCCCCe-----EEccC-------------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CCE
Confidence 999988753 22221 01245678999999988743 22 6788999874 443
No 244
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.42 E-value=3e-09 Score=94.47 Aligned_cols=249 Identities=11% Similarity=0.123 Sum_probs=141.5
Q ss_pred cceEEEEEEecCCCCEEEEEeC----CCeEEEEEcCC--ceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290 114 EKINRVRWCAAPNGSMFILSTN----DKTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~----d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
.....+++ ++++++|+++.. ++.|..|++.. +.+..+.... ...........++++.+++.
T Consensus 37 ~~Ps~l~~--~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~-----------~~g~~p~~i~~~~~g~~l~v 103 (345)
T PF10282_consen 37 ENPSWLAV--SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP-----------SGGSSPCHIAVDPDGRFLYV 103 (345)
T ss_dssp SSECCEEE---TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE-----------ESSSCEEEEEECTTSSEEEE
T ss_pred CCCceEEE--EeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec-----------cCCCCcEEEEEecCCCEEEE
Confidence 45667888 789999998865 57999998876 4444432211 01122223333444555444
Q ss_pred ccccccceeEEEecCCc-ccceeeeeec---------cccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeee
Q 015290 188 LEWTENMATKIANVGNS-VHARCQKVYP---------HAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNI 255 (409)
Q Consensus 188 ~~~~~~~~i~~~~~~~~-~~~~~~~~~~---------~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~ 255 (409)
+.. .++.+.++++... ........+. ........++.++|+++++++. ....|.+|++......+..
T Consensus 104 any-~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~ 182 (345)
T PF10282_consen 104 ANY-GGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP 182 (345)
T ss_dssp EET-TTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE
T ss_pred EEc-cCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE
Confidence 432 2667888888753 2222221110 1123456789999999988886 6678999999833321211
Q ss_pred -eecCCCcCcCccCceEEEEEeCCCCCEE-EEEeCCCeEEEEeCC--CccccccccccccccccccCCccccccccccee
Q 015290 256 -VDMKPSNMDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (409)
Q Consensus 256 -~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 331 (409)
..+. + ......+.+.|+|++ +++ +....++.|.++++. .+.. ........ .+. .+.+ .....
T Consensus 183 ~~~~~---~-~~G~GPRh~~f~pdg-~~~Yv~~e~s~~v~v~~~~~~~g~~--~~~~~~~~---~~~---~~~~-~~~~~ 248 (345)
T PF10282_consen 183 VDSIK---V-PPGSGPRHLAFSPDG-KYAYVVNELSNTVSVFDYDPSDGSL--TEIQTIST---LPE---GFTG-ENAPA 248 (345)
T ss_dssp EEEEE---C-STTSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTEE--EEEEEEES---CET---TSCS-SSSEE
T ss_pred eeccc---c-ccCCCCcEEEEcCCc-CEEEEecCCCCcEEEEeecccCCce--eEEEEeee---ccc---cccc-cCCce
Confidence 1111 2 233557899999999 655 455678899999988 3321 11111111 000 0000 12577
Q ss_pred eeEeccCCCEEEEee-c-CeEEEEEccCC-Cc--ceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290 332 DIKFANDGQHLLSRD-Y-MNLKLWDIRMD-ST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR 405 (409)
Q Consensus 332 ~~~~s~~g~~l~sg~-~-~~v~iwd~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d 405 (409)
.++++|||++|.++. . +.|.+|+++.. ++ .+..+...... + +.++++|+|++|+++..+
T Consensus 249 ~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~-P--------------r~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 249 EIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF-P--------------RHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp EEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS-E--------------EEEEE-TTSSEEEEEETT
T ss_pred eEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC-c--------------cEEEEeCCCCEEEEEecC
Confidence 899999999999875 3 99999999432 22 22333322221 1 689999999999987654
No 245
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=1.1e-10 Score=106.90 Aligned_cols=182 Identities=14% Similarity=0.158 Sum_probs=110.7
Q ss_pred cceEEEEEEecCCCCEEEEEeCC-C--eEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTND-K--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
..+.+..| +|||+.|+..+.+ + .|.+||+.+++...+..
T Consensus 218 ~~~~~p~w--SPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~------------------------------------ 259 (448)
T PRK04792 218 EPLMSPAW--SPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS------------------------------------ 259 (448)
T ss_pred CcccCceE--CCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC------------------------------------
Confidence 57888999 8999998876543 2 57778887665432211
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCe--EEEEEccCCCceeeeeecCCCcCcCc
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMKPSNMDDL 266 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~--i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (409)
..+.....+|+|||+.|+.. .++. |+++|+. .+.... +..+
T Consensus 260 --------------------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~-tg~~~~--------lt~~ 304 (448)
T PRK04792 260 --------------------------FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA-TKALTR--------ITRH 304 (448)
T ss_pred --------------------------CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC-CCCeEE--------CccC
Confidence 11122357899999988753 5664 7777876 443322 2334
Q ss_pred cCceEEEEEeCCCCCEEEEEe-CCC--eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290 267 TEVITSAEFHPIYCNLLAYSS-SRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (409)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 343 (409)
.......+|+|+| +.|+..+ .++ .|.++|+.+++. ..+.. . .......+|+|||++|+
T Consensus 305 ~~~~~~p~wSpDG-~~I~f~s~~~g~~~Iy~~dl~~g~~-----~~Lt~-----------~--g~~~~~~~~SpDG~~l~ 365 (448)
T PRK04792 305 RAIDTEPSWHPDG-KSLIFTSERGGKPQIYRVNLASGKV-----SRLTF-----------E--GEQNLGGSITPDGRSMI 365 (448)
T ss_pred CCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCE-----EEEec-----------C--CCCCcCeeECCCCCEEE
Confidence 4456788999999 7666554 334 466667766542 11111 0 11234578999999988
Q ss_pred Eee-c-C--eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290 344 SRD-Y-M--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR 405 (409)
Q Consensus 344 sg~-~-~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d 405 (409)
..+ . + .|.++|+.. ++ ...+.... .. ....|+|||++|+..+.+
T Consensus 366 ~~~~~~g~~~I~~~dl~~-g~-~~~lt~~~-~d---------------~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 366 MVNRTNGKFNIARQDLET-GA-MQVLTSTR-LD---------------ESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred EEEecCCceEEEEEECCC-CC-eEEccCCC-CC---------------CCceECCCCCEEEEEEec
Confidence 654 2 4 556677764 33 33333221 11 256899999988766544
No 246
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.41 E-value=3.1e-12 Score=109.06 Aligned_cols=202 Identities=11% Similarity=0.100 Sum_probs=143.3
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (409)
-....+.+ +.+|.+|+.++..|.+..+|..++++...+.. ...+.. +.+-...++++.+. .
T Consensus 130 FGPY~~~y--trnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v--~Etv~D------------v~~LHneq~~AVAQ---K 190 (545)
T KOG1272|consen 130 FGPYHLDY--TRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV--METVRD------------VTFLHNEQFFAVAQ---K 190 (545)
T ss_pred cCCeeeee--cCCccEEEecCCccceeeeecccceeeeeeeh--hhhhhh------------hhhhcchHHHHhhh---h
Confidence 34567888 79999999999999999999999887654331 111112 22222223333332 4
Q ss_pred ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEE
Q 015290 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (409)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (409)
..+.+||-.. .+-.|++ ....|..+.|-|..-+|+++ ..|.+..-|+. .++.+.. +....+.+..
T Consensus 191 ~y~yvYD~~G-tElHClk-----~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS-~GklVa~-------~~t~~G~~~v 256 (545)
T KOG1272|consen 191 KYVYVYDNNG-TELHCLK-----RHIRVARLEFLPYHFLLVAASEAGFLKYQDVS-TGKLVAS-------IRTGAGRTDV 256 (545)
T ss_pred ceEEEecCCC-cEEeehh-----hcCchhhhcccchhheeeecccCCceEEEeec-hhhhhHH-------HHccCCccch
Confidence 4667777544 2223433 22567889999988778888 89999999999 7776655 3445567888
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEE
Q 015290 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 351 (409)
Q Consensus 273 ~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~ 351 (409)
++-+|-+ ..+-+|...|+|.+|...+.+.. ..+- .|.++|.++++.++|+|+||.+ |..++
T Consensus 257 m~qNP~N-aVih~GhsnGtVSlWSP~skePL----vKiL-------------cH~g~V~siAv~~~G~YMaTtG~Dr~~k 318 (545)
T KOG1272|consen 257 MKQNPYN-AVIHLGHSNGTVSLWSPNSKEPL----VKIL-------------CHRGPVSSIAVDRGGRYMATTGLDRKVK 318 (545)
T ss_pred hhcCCcc-ceEEEcCCCceEEecCCCCcchH----HHHH-------------hcCCCcceEEECCCCcEEeeccccccee
Confidence 8889988 89999999999999998776542 2222 2478999999999999999876 69999
Q ss_pred EEEccCCCcceEEEec
Q 015290 352 LWDIRMDSTPVATFKI 367 (409)
Q Consensus 352 iwd~~~~~~~~~~~~~ 367 (409)
|||+++ ...+.++..
T Consensus 319 IWDlR~-~~ql~t~~t 333 (545)
T KOG1272|consen 319 IWDLRN-FYQLHTYRT 333 (545)
T ss_pred Eeeecc-ccccceeec
Confidence 999997 444444443
No 247
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.39 E-value=5.5e-12 Score=123.73 Aligned_cols=199 Identities=19% Similarity=0.326 Sum_probs=145.1
Q ss_pred cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (409)
...+-..|.++.=+|...+.+||+.||.|++|....++. +..++.-.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~---------------------------v~~~rt~g------ 2250 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ---------------------------VVCFRTAG------ 2250 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCe---------------------------EEEeeccC------
Confidence 333567899999999889999999999999999876653 22222111
Q ss_pred ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (409)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
+..|+.+.| +..|..+..+..||.+.+|.+...-. .
T Consensus 2251 -----~s~vtr~~f--~~qGnk~~i~d~dg~l~l~q~~pk~~---~---------------------------------- 2286 (2439)
T KOG1064|consen 2251 -----NSRVTRSRF--NHQGNKFGIVDGDGDLSLWQASPKPY---T---------------------------------- 2286 (2439)
T ss_pred -----cchhhhhhh--cccCCceeeeccCCceeecccCCcce---e----------------------------------
Confidence 058999999 68999999999999999998872211 0
Q ss_pred ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe----cCCeEEEEEccCCCceeeeeecCCCcC
Q 015290 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNM 263 (409)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~----~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (409)
.. +.|......+.|-. ..++++ .++.+.+||.-......-+ -
T Consensus 2287 ------------------------s~-qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v-------~ 2332 (2439)
T KOG1064|consen 2287 ------------------------SW-QCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV-------H 2332 (2439)
T ss_pred ------------------------cc-ccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee-------e
Confidence 01 45666667777754 445552 5789999998733322222 3
Q ss_pred cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (409)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 343 (409)
..|.+.++++++.|.. ++|++|+.+|.|++||++..++. +.+.. +. ...+++
T Consensus 2333 ~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql~----h~~~~----------------------~~-~~~~f~ 2384 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLR----HTFQA----------------------LD-TREYFV 2384 (2439)
T ss_pred eecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHHH----HHhhh----------------------hh-hhheee
Confidence 6799999999999998 99999999999999999886541 22211 33 456888
Q ss_pred Eeec-CeEEEEEccCCCcceEEEe
Q 015290 344 SRDY-MNLKLWDIRMDSTPVATFK 366 (409)
Q Consensus 344 sg~~-~~v~iwd~~~~~~~~~~~~ 366 (409)
+|+. |.++||++.. -..+..+.
T Consensus 2385 ~~ss~g~ikIw~~s~-~~ll~~~p 2407 (2439)
T KOG1064|consen 2385 TGSSEGNIKIWRLSE-FGLLHTFP 2407 (2439)
T ss_pred ccCcccceEEEEccc-cchhhcCc
Confidence 9975 9999999985 45565554
No 248
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=2.1e-09 Score=89.70 Aligned_cols=203 Identities=11% Similarity=0.133 Sum_probs=133.8
Q ss_pred cceEEEEEEecCCCCEEEEEeC---CCeEEEEEcCC--ceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290 114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~---d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (409)
+.++-|+| +++++.|.++.. +|.|.-|.++. |.+...-.
T Consensus 40 ~nptyl~~--~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~---------------------------------- 83 (346)
T COG2706 40 GNPTYLAV--NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR---------------------------------- 83 (346)
T ss_pred CCCceEEE--CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec----------------------------------
Confidence 67889999 789989988844 46777777664 44333211
Q ss_pred cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (409)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (409)
. .....+...+++++++++++++ ..|.|.++-++..+.....+. ...|
T Consensus 84 -------------~------------~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~-----~~~h 133 (346)
T COG2706 84 -------------Q------------TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQ-----VVKH 133 (346)
T ss_pred -------------c------------ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcccccee-----eeec
Confidence 0 1122233789999999999998 789999999985555444322 1223
Q ss_pred cCc----------eEEEEEeCCCCCEEEEEeC-CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEe
Q 015290 267 TEV----------ITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (409)
Q Consensus 267 ~~~----------v~~~~~~p~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 335 (409)
.+. +....+.|++ ++|++... --.|.+|++..+++.......+.. ....+-+.|
T Consensus 134 ~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~--------------G~GPRHi~F 198 (346)
T COG2706 134 TGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP--------------GAGPRHIVF 198 (346)
T ss_pred CCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEEEEcccCccccccccccCC--------------CCCcceEEE
Confidence 332 7889999999 88888753 236899999988764332222222 356788999
Q ss_pred ccCCCEEEEeec--CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290 336 ANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (409)
Q Consensus 336 s~~g~~l~sg~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s 403 (409)
+|++++.....+ ++|.+|........+..++.+.... ..|....- .-.+..+|||++|.++.
T Consensus 199 Hpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP----~dF~g~~~--~aaIhis~dGrFLYasN 262 (346)
T COG2706 199 HPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP----EDFTGTNW--AAAIHISPDGRFLYASN 262 (346)
T ss_pred cCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc----cccCCCCc--eeEEEECCCCCEEEEec
Confidence 999999888875 9999999975334444444332221 11111111 14789999999987654
No 249
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.36 E-value=1.4e-09 Score=96.40 Aligned_cols=200 Identities=14% Similarity=0.148 Sum_probs=125.9
Q ss_pred CEEE-EEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceEEEEEEe
Q 015290 45 DYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA 123 (409)
Q Consensus 45 ~~la-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~ 123 (409)
++++ +-..+|.|.|.|..+.+ .+..+.... +.-..+.|
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~---------------------------~~~~i~~~~------------~~h~~~~~-- 44 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNK---------------------------VVARIPTGG------------APHAGLKF-- 44 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-S---------------------------EEEEEE-ST------------TEEEEEE---
T ss_pred cEEEEEecCCCEEEEEECCCCe---------------------------EEEEEcCCC------------CceeEEEe--
Confidence 4454 45578999999988766 345555433 23345667
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCC
Q 015290 124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN 203 (409)
Q Consensus 124 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 203 (409)
++||+++++++.|+.|.++|+.+++......
T Consensus 45 s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~------------------------------------------------- 75 (369)
T PF02239_consen 45 SPDGRYLYVANRDGTVSVIDLATGKVVATIK------------------------------------------------- 75 (369)
T ss_dssp TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-------------------------------------------------
T ss_pred cCCCCEEEEEcCCCeEEEEECCcccEEEEEe-------------------------------------------------
Confidence 8999999999999999999999987655432
Q ss_pred cccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCC
Q 015290 204 SVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 281 (409)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 281 (409)
. ......+++++||++++++ ..+.+.++|.+ +.+.++.+.............+.++..+|..+.
T Consensus 76 -----------~--G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~-tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~ 141 (369)
T PF02239_consen 76 -----------V--GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE-TLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE 141 (369)
T ss_dssp --------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETT-T--EEEEEE--EE-TTTS---EEEEEE-SSSSE
T ss_pred -----------c--CCCcceEEEcCCCCEEEEEecCCCceeEeccc-cccceeecccccccccccCCCceeEEecCCCCE
Confidence 1 1234679999999999987 79999999998 677777654332222224456788888898823
Q ss_pred EEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEccCCC
Q 015290 282 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDS 359 (409)
Q Consensus 282 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~~~~ 359 (409)
++++.-..+.|.+.|....+.. ..+.+.. ........|+|+++|++.+. . +.|-++|..+ +
T Consensus 142 fVv~lkd~~~I~vVdy~d~~~~--~~~~i~~--------------g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~-~ 204 (369)
T PF02239_consen 142 FVVNLKDTGEIWVVDYSDPKNL--KVTTIKV--------------GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT-G 204 (369)
T ss_dssp EEEEETTTTEEEEEETTTSSCE--EEEEEE----------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT-T
T ss_pred EEEEEccCCeEEEEEecccccc--ceeeecc--------------cccccccccCcccceeeecccccceeEEEeecc-c
Confidence 4444445588888887664321 0112222 23567889999999988764 3 8999999875 5
Q ss_pred cceEEE
Q 015290 360 TPVATF 365 (409)
Q Consensus 360 ~~~~~~ 365 (409)
+.+..+
T Consensus 205 k~v~~i 210 (369)
T PF02239_consen 205 KLVALI 210 (369)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 544443
No 250
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.36 E-value=1.2e-10 Score=93.99 Aligned_cols=120 Identities=17% Similarity=0.160 Sum_probs=87.6
Q ss_pred cccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeE
Q 015290 215 HAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 292 (409)
Q Consensus 215 ~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i 292 (409)
+.|+.+....+|+... +.+.+| +|+.+..||++.++..+.. ...-|...|.++.-+|..+.++++|+.|..|
T Consensus 162 k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i 235 (339)
T KOG0280|consen 162 KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH------NSKVHTSGVVSIYSSPPKPTYIATGSYDECI 235 (339)
T ss_pred cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee------cceeeecceEEEecCCCCCceEEEeccccce
Confidence 6788888989997653 577788 9999999999965554432 1356888999999998777999999999999
Q ss_pred EEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC--EEEEeecCeEEEEEccC
Q 015290 293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRDYMNLKLWDIRM 357 (409)
Q Consensus 293 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~sg~~~~v~iwd~~~ 357 (409)
++||.|+-.. .++.. .-.+.|+.+.++|.-. .|+++-.+..+|-+...
T Consensus 236 ~~~DtRnm~k-----Pl~~~------------~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~ 285 (339)
T KOG0280|consen 236 RVLDTRNMGK-----PLFKA------------KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSD 285 (339)
T ss_pred eeeehhcccC-----ccccC------------ccccceEEEEecchhhhHHHHHHHhcCceEEEecc
Confidence 9999996332 11211 0136899999999643 34444346677777653
No 251
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.35 E-value=8.4e-11 Score=96.83 Aligned_cols=293 Identities=11% Similarity=0.144 Sum_probs=162.7
Q ss_pred CCCcEEEEEECCCCC--EEEEEecCCeEEEEeccCCcCCCCccc---------hhhhhhhcccccccCCCceeeeeee-c
Q 015290 31 DVDIVSAIEFDKTGD--YLAVGDRGGRVILFETVGGKNTPNQHI---------SRSELEKQMDFTSTSHPEYRYKTEF-Q 98 (409)
Q Consensus 31 h~~~v~~v~~~~~~~--~la~~~~dg~i~iw~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~ 98 (409)
-..+|..+.|.+++. .++..+.|.+|++|.+......+ .+. .+..|+.+.-.-.....++.+.+.+ .
T Consensus 83 ieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~-~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aN 161 (433)
T KOG1354|consen 83 IEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKK-EGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYAN 161 (433)
T ss_pred hhhhhhhceecCCCCccEEEEecCCcceeeeeeecccccc-ccccccccCCCCccceeeceeeccccceeeeeeeeeccc
Confidence 467899999999664 56667789999999987654321 000 0000000000000001123333333 3
Q ss_pred CCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCc----eeeeeeccCCCcccccccccccccCce
Q 015290 99 SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ----KVKKIKEMDHFPFVSSENTLLAEKNFM 174 (409)
Q Consensus 99 ~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (409)
+|. --|++|.+ +.|++.++++. |=.|.+|++.-. .++-+...++.. ....+.
T Consensus 162 aHt------------yhiNSIS~--NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEe---------LteVIT 217 (433)
T KOG1354|consen 162 AHT------------YHINSISV--NSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEE---------LTEVIT 217 (433)
T ss_pred cce------------eEeeeeee--cCccceEeecc-ceeeeeccccccCCceeEEEccccCHHH---------HHHHHh
Confidence 455 68999999 68887777654 667999988622 112111111100 001111
Q ss_pred eccCCCCC-ceeecccccccceeEEEecCCcccc------------eeeeeeccccccceeEEEeCCCCCeEEEecCCeE
Q 015290 175 NEHNPPSF-AHGYHLEWTENMATKIANVGNSVHA------------RCQKVYPHAHDFNINSISNNSDCETFVSADDLRI 241 (409)
Q Consensus 175 ~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~------------~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i 241 (409)
+.-++|.. .++.+. ...|+|++-|+...... ..-+.++.+--..|..+.|+++|+++++-+--+|
T Consensus 218 saEFhp~~cn~f~YS--SSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltv 295 (433)
T KOG1354|consen 218 SAEFHPHHCNVFVYS--SSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTV 295 (433)
T ss_pred hhccCHhHccEEEEe--cCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecccee
Confidence 12222221 112222 23789999999742211 1122233444567889999999999999877899
Q ss_pred EEEEccCCCceeeeeecCCCcCcC-----ccCc---eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccccccc
Q 015290 242 NLWNLEISDQCFNIVDMKPSNMDD-----LTEV---ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA 313 (409)
Q Consensus 242 ~lwd~~~~~~~~~~~~~~~~~~~~-----~~~~---v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 313 (409)
++||+.....++.++.+...-... ..+. -..++|+-++ .++++|+..+.+++++...|..... .+...
T Consensus 296 k~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~-~~v~TGsy~n~frvf~~~~gsk~d~---tl~as 371 (433)
T KOG1354|consen 296 KLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND-SYVMTGSYNNVFRVFNLARGSKEDF---TLEAS 371 (433)
T ss_pred EEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc-ceEecccccceEEEecCCCCcceee---ccccc
Confidence 999997666666664332110000 0111 2467899888 8999999999999999665532111 01100
Q ss_pred ccccCCccc--------------------ccccccceeeeEeccCCCEEEEeecCeEEEEE
Q 015290 314 AESHGSKSF--------------------FTEIIASISDIKFANDGQHLLSRDYMNLKLWD 354 (409)
Q Consensus 314 ~~~~~~~~~--------------------~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd 354 (409)
.....++.. --+....+...+|+|..+.+|.+..+.++||.
T Consensus 372 r~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnnlyif~ 432 (433)
T KOG1354|consen 372 RKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATNNLYIFQ 432 (433)
T ss_pred ccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccceeeeeecCceEEec
Confidence 000000000 01123456677999999999988777777763
No 252
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.33 E-value=1.3e-09 Score=86.99 Aligned_cols=158 Identities=13% Similarity=0.029 Sum_probs=101.5
Q ss_pred eeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCC
Q 015290 221 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (409)
Q Consensus 221 v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~ 299 (409)
+.+++++++++++++. ....|..|.+...++.+..+.. ....+.-.+..|+... ..||++..||++.|||+|.
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~-----a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYE-----APTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEe-----cccCCCceeeeeccCc-ceEEEEecCCcEEEEEecc
Confidence 6789999999999987 8889999999844443322211 2222334578899888 8999999999999999998
Q ss_pred ccccccccccccccccccCCcccccccccceeeeEeccCCC--EEEEeec-CeEEEEEccCCCcceEEEecccCcccccc
Q 015290 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC 376 (409)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 376 (409)
...... .. .+....|.+.+..+.|++-|. +|..... +.+.+.|++. ++-.+.+.-....
T Consensus 235 ~~tpm~----~~--------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~-~~~~q~I~i~~d~----- 296 (344)
T KOG4532|consen 235 MATPMA----EI--------SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN-YVNHQVIVIPDDV----- 296 (344)
T ss_pred cccchh----hh--------cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc-CceeeEEecCccc-----
Confidence 543211 11 111234688999999998763 4444444 9999999986 5444443322221
Q ss_pred cccCCCCccceeeEEEcCCCCeEEEccc
Q 015290 377 DLYNNDSIFDKFECSVSGDGLHFATGSY 404 (409)
Q Consensus 377 ~~~~~~~~~~v~~~~~spdg~~l~s~s~ 404 (409)
+-+...+.++...|+.++.-+.+.++
T Consensus 297 --~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 297 --ERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred --cccccccccccccccCCCcccccccc
Confidence 11111222356777766655544443
No 253
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1.7e-09 Score=94.79 Aligned_cols=277 Identities=13% Similarity=0.147 Sum_probs=153.9
Q ss_pred CcEEEEEECCCCCEEEEEec-----------CCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCC
Q 015290 33 DIVSAIEFDKTGDYLAVGDR-----------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE 101 (409)
Q Consensus 33 ~~v~~v~~~~~~~~la~~~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 101 (409)
..|.-+.|||..+||+|-+. ...++|||+.++... +.|..-.
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk---------------------------rsF~~~~ 302 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK---------------------------RSFPVIK 302 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchh---------------------------cceeccC
Confidence 35889999999999998652 147999999998742 2222111
Q ss_pred ccccccccceeccceEE-EEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCC
Q 015290 102 PEFDYLKSLEIEEKINR-VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180 (409)
Q Consensus 102 ~~~~~~~~~~~~~~v~~-l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (409)
. ...++. ..| |.|++++|--.. ..|.|++...-.+........ ..+....++|
T Consensus 303 ~----------~~~~WP~frW--S~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki-------------~gIr~FswsP 356 (698)
T KOG2314|consen 303 S----------PYLKWPIFRW--SHDDKYFARMTG-NSISIYETPSFMLLDKKSLKI-------------SGIRDFSWSP 356 (698)
T ss_pred C----------CccccceEEe--ccCCceeEEecc-ceEEEEecCceeeecccccCC-------------ccccCcccCC
Confidence 0 012332 468 789999887666 568888865532221111100 1111222333
Q ss_pred CCceeecccccccc---eeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-c-------C---CeEEEEEc
Q 015290 181 SFAHGYHLEWTENM---ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-------D---LRINLWNL 246 (409)
Q Consensus 181 ~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~-------d---~~i~lwd~ 246 (409)
...++++-.--.+. .+.+-.+.. .+.+++- +-+.-.=..|.|..+|.+|+.- . . ..+.|+.+
T Consensus 357 ~~~llAYwtpe~~~~parvtL~evPs---~~~iRt~-nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfri 432 (698)
T KOG2314|consen 357 TSNLLAYWTPETNNIPARVTLMEVPS---KREIRTK-NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRI 432 (698)
T ss_pred CcceEEEEcccccCCcceEEEEecCc---cceeeec-cceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEe
Confidence 33333322221111 122222211 1222211 1111111346677788888762 1 1 13556666
Q ss_pred cCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeC---CCeEEEEeCCCccccccccccccccccccCCcccc
Q 015290 247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323 (409)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (409)
+...-++..+ .....|...+|.|.| ..|++-+. ..++.+|.+.+.......++.+..
T Consensus 433 reKdIpve~v--------elke~vi~FaWEP~g-dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----------- 492 (698)
T KOG2314|consen 433 REKDIPVEVV--------ELKESVIAFAWEPHG-DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----------- 492 (698)
T ss_pred eccCCCceee--------ecchheeeeeeccCC-CeEEEEEccccccceeEEEeecCCCchhhhhhhcc-----------
Confidence 6333334332 234678999999999 66665442 357888888753222222333333
Q ss_pred cccccceeeeEeccCCCEEEEee---c-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeE
Q 015290 324 TEIIASISDIKFANDGQHLLSRD---Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 399 (409)
Q Consensus 324 ~~~~~~i~~~~~s~~g~~l~sg~---~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 399 (409)
...+.+.|+|.|++++.+. . |.+.++|.....-.......|... +.+.|.|.|+|+
T Consensus 493 ----~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~a----------------t~veWDPtGRYv 552 (698)
T KOG2314|consen 493 ----KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAA----------------TEVEWDPTGRYV 552 (698)
T ss_pred ----cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccccc----------------ccceECCCCCEE
Confidence 3567899999999998763 3 899999987311111122233333 589999999999
Q ss_pred EEcccCC
Q 015290 400 ATGSYRR 406 (409)
Q Consensus 400 ~s~s~dg 406 (409)
++++.-.
T Consensus 553 vT~ss~w 559 (698)
T KOG2314|consen 553 VTSSSSW 559 (698)
T ss_pred EEeeehh
Confidence 9988643
No 254
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.33 E-value=8.9e-11 Score=103.42 Aligned_cols=195 Identities=15% Similarity=0.137 Sum_probs=137.0
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCCc
Q 015290 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 204 (409)
Q Consensus 125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 204 (409)
+...++|....||.+++|+...++....+..... ....++-..|.+...
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~-------------------------------~s~t~~~~~w~L~~~ 51 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIAS-------------------------------LSGTCTYTKWGLSAD 51 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchh-------------------------------ccCcceeEEEEEEec
Confidence 5567999999999999999998877654321110 001112223332111
Q ss_pred ccceeeeeeccccccceeEEE----eCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCC
Q 015290 205 VHARCQKVYPHAHDFNINSIS----NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 279 (409)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~l~----~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 279 (409)
. .|. ...++. -+.+...++-| ..|.|.+|++. .++....+ .-..|.+.|.++.++.+-
T Consensus 52 ~--s~~---------k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~-~g~it~~~-----st~~h~~~v~~~~~~~~~ 114 (541)
T KOG4547|consen 52 Y--SPM---------KWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVA-GGEITAKL-----STDKHYGNVNEILDAQRL 114 (541)
T ss_pred c--chH---------HHHhHHHHhhccCCceEEEeecCCccEEEEEec-CCeEEEEE-----ecCCCCCcceeeeccccc
Confidence 1 111 111111 12344566678 99999999998 56555443 136799999999999887
Q ss_pred CCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCC
Q 015290 280 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDS 359 (409)
Q Consensus 280 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~ 359 (409)
..|.+++.|+.+..|+...... ++.+... ...+.+++.+|||..+++++ ++|++||+.+ +
T Consensus 115 -~ciyS~~ad~~v~~~~~~~~~~----~~~~~~~-------------~~~~~sl~is~D~~~l~~as-~~ik~~~~~~-k 174 (541)
T KOG4547|consen 115 -GCIYSVGADLKVVYILEKEKVI----IRIWKEQ-------------KPLVSSLCISPDGKILLTAS-RQIKVLDIET-K 174 (541)
T ss_pred -CceEecCCceeEEEEeccccee----eeeeccC-------------CCccceEEEcCCCCEEEecc-ceEEEEEccC-c
Confidence 8999999999999999988664 3555541 34688999999999999998 8999999986 9
Q ss_pred cceEEEecccCcccccccccCCCCccceeeEEEcCC-----CCeEEEc
Q 015290 360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-----GLHFATG 402 (409)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-----g~~l~s~ 402 (409)
+.+..|.+|.+++ .+++|--+ |.++.++
T Consensus 175 evv~~ftgh~s~v---------------~t~~f~~~~~g~~G~~vLss 207 (541)
T KOG4547|consen 175 EVVITFTGHGSPV---------------RTLSFTTLIDGIIGKYVLSS 207 (541)
T ss_pred eEEEEecCCCcce---------------EEEEEEEeccccccceeeec
Confidence 9999999999987 46777665 5665543
No 255
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=5.7e-11 Score=102.13 Aligned_cols=265 Identities=15% Similarity=0.164 Sum_probs=165.8
Q ss_pred eeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCccccccccccccc
Q 015290 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (409)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (409)
++...|.+|. +.|..|.| +..|..|++++.|..|.+||...+.....+...+...+....|.+..
T Consensus 133 ~l~~kL~~H~------------GcVntV~F--N~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s- 197 (559)
T KOG1334|consen 133 RLQKKLNKHK------------GCVNTVHF--NQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFS- 197 (559)
T ss_pred hhhhcccCCC------------Cccceeee--cccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCC-
Confidence 4455677787 99999999 68999999999999999999987765544433222222111121111
Q ss_pred CceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEccCC
Q 015290 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEIS 249 (409)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~~~~ 249 (409)
+...+..+ ..||.+++-.+.........+. +..|.++|.-++.-|+. ..|.++ .|+.+.-+|++.
T Consensus 198 --------~d~ti~~~---s~dgqvr~s~i~~t~~~e~t~r-l~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~- 264 (559)
T KOG1334|consen 198 --------GDRTIVTS---SRDGQVRVSEILETGYVENTKR-LAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQ- 264 (559)
T ss_pred --------CCcCceec---cccCceeeeeeccccceeccee-cccccCccceeeecCCCCCcccccccccceeeeeecc-
Confidence 11111111 2377777766644322222222 26799999999999975 445666 999999999984
Q ss_pred CceeeeeecCCCcCcCcc---CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccc--cccccccccccccCCccccc
Q 015290 250 DQCFNIVDMKPSNMDDLT---EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD--HSARILRDAAESHGSKSFFT 324 (409)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~---~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 324 (409)
+.....+..+ ..+. -..++++.+|.....|++|+.|-.+++||.+.-.... ..+..+..| ....
T Consensus 265 ~~pa~~~~cr----~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~-------hl~~ 333 (559)
T KOG1334|consen 265 DVPAEKFVCR----EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPH-------HLVE 333 (559)
T ss_pred CCccceeeee----ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCc-------cccc
Confidence 3332222111 1122 2578899999986799999999999999988633210 001111111 1111
Q ss_pred ccccceeeeEeccCC-CEEEEeecCeEEEEEccCC-C----------cceE-EEecccCcccccccccCCCCccceeeEE
Q 015290 325 EIIASISDIKFANDG-QHLLSRDYMNLKLWDIRMD-S----------TPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECS 391 (409)
Q Consensus 325 ~~~~~i~~~~~s~~g-~~l~sg~~~~v~iwd~~~~-~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 391 (409)
.....|++++++.++ .+|++-.|-.|+++.-... + ..+. .+++|.+... |-.+-
T Consensus 334 d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~T-------------VKgVN 400 (559)
T KOG1334|consen 334 DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRT-------------VKGVN 400 (559)
T ss_pred cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccc-------------cceee
Confidence 223579999999765 6777778899999964431 2 2223 3777776532 12343
Q ss_pred -EcCCCCeEEEcccCCCC
Q 015290 392 -VSGDGLHFATGSYRRDN 408 (409)
Q Consensus 392 -~spdg~~l~s~s~dg~i 408 (409)
|-|...|+++||+-|.|
T Consensus 401 FfGPrsEyVvSGSDCGhI 418 (559)
T KOG1334|consen 401 FFGPRSEYVVSGSDCGHI 418 (559)
T ss_pred eccCccceEEecCccceE
Confidence 55888999999988765
No 256
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.32 E-value=3.9e-10 Score=93.01 Aligned_cols=203 Identities=10% Similarity=0.176 Sum_probs=137.0
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
-..+++++.+.++...|++|-..|++.-+.+...-. .....+....|.
T Consensus 67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn-----------------------km~~~r~~~~h~--------- 114 (404)
T KOG1409|consen 67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN-----------------------KMTFLKDYLAHQ--------- 114 (404)
T ss_pred CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhh-----------------------hcchhhhhhhhh---------
Confidence 367899999999999999999999998887654322 112345567777
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
..|..+-| +...+.+++.+.|+.+.---.+.+...--.. +.+. .....+.....+
T Consensus 115 ---~~v~~~if--~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-------------------~~~~-~t~~~~d~~~~f 169 (404)
T KOG1409|consen 115 ---ARVSAIVF--SLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-------------------FETP-ASALQFDALYAF 169 (404)
T ss_pred ---cceeeEEe--cCCceeEEEeccccceEEEeeccCCcccceE-------------------eecc-CCCCceeeEEEE
Confidence 89999999 6777899999999877544343332211110 0000 000011111111
Q ss_pred --cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290 191 --TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (409)
Q Consensus 191 --~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (409)
...+.+..-.+... ....+..+ .+|.+.+.+++|.|....|.+| .|..+.+||+. .+.-... ++.+|.
T Consensus 170 vGd~~gqvt~lr~~~~-~~~~i~~~-~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig-g~~g~~~------el~gh~ 240 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQN-GCQLITTF-NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG-GRKGTAY------ELQGHN 240 (404)
T ss_pred ecccccceEEEEEeec-CCceEEEE-cCcccceEEEEEcCCCcEEEeccccCceEEEecc-CCcceee------eeccch
Confidence 11223333332221 12344444 8999999999999999999999 99999999998 3332222 268899
Q ss_pred CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCc
Q 015290 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 300 (409)
Q Consensus 268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~ 300 (409)
..|..+...+.- +.+.+++.||.|.+||+...
T Consensus 241 ~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 241 DKVQALSYAQHT-RQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhhhhhhhhh-eeeeeccCCCeEEEEeccce
Confidence 999999988887 89999999999999998763
No 257
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.32 E-value=1.2e-09 Score=94.81 Aligned_cols=280 Identities=12% Similarity=0.129 Sum_probs=158.4
Q ss_pred CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (409)
.-++..+.|||.|.+|++....| |.+|+...... +..+ -|
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~---------------------------l~~~-~~----------- 71 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAK---------------------------LVRF-RH----------- 71 (561)
T ss_pred CcchhheeecCcchheehhhccc-eEEccccchhh---------------------------eeee-ec-----------
Confidence 45788999999999999887654 89998775542 1112 22
Q ss_pred eccceEEEEEEecCCCCEEEEEeCC---------------CeEEEEEcCCceeeeeeccCCCcccc--cccccccccCce
Q 015290 112 IEEKINRVRWCAAPNGSMFILSTND---------------KTIKLWKVRDQKVKKIKEMDHFPFVS--SENTLLAEKNFM 174 (409)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d---------------~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 174 (409)
..|..+.| +|++++|.+-+.. +.+.+||+.++.+...+.....+... -+.+...+....
T Consensus 72 --~~V~~~~f--SP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~A 147 (561)
T COG5354 72 --PDVKYLDF--SPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVA 147 (561)
T ss_pred --CCceeccc--CcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhh
Confidence 36888888 7899999885433 35899999999887766554443211 111111111111
Q ss_pred eccCCC----------------------CCceeecccccccceeEEEecCCcccceeeeeeccccccc----------ee
Q 015290 175 NEHNPP----------------------SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFN----------IN 222 (409)
Q Consensus 175 ~~~~~~----------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----------v~ 222 (409)
....+. -..+..+... ....+..|-.+.......++++.-..... =.
T Consensus 148 Rvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~-n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~ 226 (561)
T COG5354 148 RVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEG-NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV 226 (561)
T ss_pred hhccCeEEEEecCCccccCchhhccccceeeEEecCCC-CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc
Confidence 111100 0000000000 01124555444332222222210111110 12
Q ss_pred EEEeCCCCCeEEEe------------cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEE--eC
Q 015290 223 SISNNSDCETFVSA------------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS--SS 288 (409)
Q Consensus 223 ~l~~~~~~~~l~~~------------~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~--s~ 288 (409)
.+.|++.|++|+.- ....++|++++ +..+.+ .....++|...+|.|.+ +.|++. -.
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~--e~~i~V-------~~~~~~pVhdf~W~p~S-~~F~vi~g~~ 296 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT--ERSIPV-------EKDLKDPVHDFTWEPLS-SRFAVISGYM 296 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeec--ccccce-------eccccccceeeeecccC-CceeEEeccc
Confidence 45667777766531 12345666665 222222 12456899999999998 655544 46
Q ss_pred CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c---CeEEEEEccCCCcceEE
Q 015290 289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLWDIRMDSTPVAT 364 (409)
Q Consensus 289 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~---~~v~iwd~~~~~~~~~~ 364 (409)
+-.+.++|++.+-. ..+. ...=+.+.|+|.+++++.++ + |.+-+||......++..
T Consensus 297 pa~~s~~~lr~Nl~-----~~~P---------------e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~ 356 (561)
T COG5354 297 PASVSVFDLRGNLR-----FYFP---------------EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGA 356 (561)
T ss_pred ccceeecccccceE-----EecC---------------CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEE
Confidence 77899999988521 1111 23456688999999988754 3 89999998632233445
Q ss_pred EecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290 365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (409)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s 403 (409)
+.+.... -+.|+|||+++.+..
T Consensus 357 ~~~~n~s-----------------~~~wspd~qF~~~~~ 378 (561)
T COG5354 357 FNGLNTS-----------------YCDWSPDGQFYDTDT 378 (561)
T ss_pred eecCCce-----------------EeeccCCceEEEecC
Confidence 5555442 578999998876654
No 258
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=7.3e-11 Score=106.24 Aligned_cols=257 Identities=12% Similarity=0.140 Sum_probs=165.7
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
......|++|+....|+|+|+.||.+++..+.+.... ...++.. .......-+++.||.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d-------~~~~gla-----a~snLsmNQtLeGH~--------- 71 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTD-------LNKSGLA-----AASNLSMNQTLEGHN--------- 71 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCc-------ccccccc-----cccccchhhhhccCc---------
Confidence 3467899999999999999999999999988765421 0000000 011122335688999
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
+.|.-+.| +.+.+.|-++..+|.|.+|-+-.+.......
T Consensus 72 ---~sV~vvTW--Ne~~QKLTtSDt~GlIiVWmlykgsW~EEMi------------------------------------ 110 (1189)
T KOG2041|consen 72 ---ASVMVVTW--NENNQKLTTSDTSGLIIVWMLYKGSWCEEMI------------------------------------ 110 (1189)
T ss_pred ---ceEEEEEe--ccccccccccCCCceEEEEeeecccHHHHHh------------------------------------
Confidence 89999999 6788899999999999999988775432111
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (409)
.....+.|.+++|+.+|..++.. .||.|.+=.++ +..+.-- .+++ ..
T Consensus 111 -----------------------NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd--GNRIwgK-----eLkg--~~ 158 (1189)
T KOG2041|consen 111 -----------------------NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD--GNRIWGK-----ELKG--QL 158 (1189)
T ss_pred -----------------------hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec--cceecch-----hcch--he
Confidence 03455678899999999999999 99999887776 2222110 0221 12
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccc-cccccccccccccCCcccccccccceeeeEec--------cCCC
Q 015290 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFA--------NDGQ 340 (409)
Q Consensus 270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--------~~g~ 340 (409)
...+.|++|. ..++.+-..|.+++||...+=... ..-..... ...+......|-.+.|. ||-.
T Consensus 159 l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~-------tg~~s~~~~kia~i~w~~g~~~~v~pdrP 230 (1189)
T KOG2041|consen 159 LAHVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNG-------TGIFSNFPTKIAEIEWNTGPYQPVPPDRP 230 (1189)
T ss_pred ccceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEee-------eeeecCCCccccceeeccCccccCCCCCC
Confidence 3578999998 877788889999999976531100 00000111 11111111224444443 4666
Q ss_pred EEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290 341 HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRR 406 (409)
Q Consensus 341 ~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg 406 (409)
.||.+-+ |.+.|.--..+..++-.-.+. .+..+.|+++|..||.++.|.
T Consensus 231 ~lavcy~nGr~QiMR~eND~~Pvv~dtgm-----------------~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 231 RLAVCYANGRMQIMRSENDPEPVVVDTGM-----------------KIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred EEEEEEcCceehhhhhcCCCCCeEEeccc-----------------EeecceecCCCcEEEEccCcc
Confidence 7777755 777776554433443322221 125899999999999998774
No 259
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.30 E-value=5e-10 Score=98.79 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=93.8
Q ss_pred cccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEE
Q 015290 215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 293 (409)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~ 293 (409)
..|.+.|+++.++.+-..|.++ .|+.+..|+.. ....++. +......+.+++++||| .++++++ +.|+
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~-~~~~~~~-------~~~~~~~~~sl~is~D~-~~l~~as--~~ik 167 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK-EKVIIRI-------WKEQKPLVSSLCISPDG-KILLTAS--RQIK 167 (541)
T ss_pred CCCCCcceeeecccccCceEecCCceeEEEEecc-cceeeee-------eccCCCccceEEEcCCC-CEEEecc--ceEE
Confidence 5789999999999888889998 99999999998 6666666 45666778999999999 9998876 5799
Q ss_pred EEeCCCccccccccccccccccccCCcccccccccceeeeEeccC-----CCEEEEeec--CeEEEEEccC
Q 015290 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-----GQHLLSRDY--MNLKLWDIRM 357 (409)
Q Consensus 294 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----g~~l~sg~~--~~v~iwd~~~ 357 (409)
+||+.+++. +.. |.+|.++|+++.|.-+ |.+++++.. ..+.+|-+..
T Consensus 168 ~~~~~~kev----v~~-------------ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 168 VLDIETKEV----VIT-------------FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEccCceE----EEE-------------ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999764 222 5667899999999887 888887753 7778887653
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=2e-09 Score=97.91 Aligned_cols=141 Identities=13% Similarity=0.110 Sum_probs=81.6
Q ss_pred eEEEeCCCCCeEEEe--cCC----eEEEEEccCC--CceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEe-CCCeE
Q 015290 222 NSISNNSDCETFVSA--DDL----RINLWNLEIS--DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFV 292 (409)
Q Consensus 222 ~~l~~~~~~~~l~~~--~d~----~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s-~dg~i 292 (409)
...+|+|||+.|+.. .+| .+.+|++... +..... ...........+|+||| +.|+..+ .+|..
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l-------t~~~~~~~~~p~wSPDG-~~Laf~s~~~g~~ 305 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL-------LNEAFGTQGNPSFSPDG-TRLVFVSNKDGRP 305 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe-------ecCCCCCcCCeEECCCC-CEEEEEECCCCCc
Confidence 457899999988864 233 3344666521 222222 12222334678999999 7666655 46655
Q ss_pred EEEe--CCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c---CeEEEEEccCCCcceEEEe
Q 015290 293 RLVD--MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFK 366 (409)
Q Consensus 293 ~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~---~~v~iwd~~~~~~~~~~~~ 366 (409)
.+|. +...... ...+.. +...+....|||||++|+..+ + ..|.+||+.. ++. ..+.
T Consensus 306 ~ly~~~~~~~g~~---~~~lt~-------------~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~-~~Lt 367 (428)
T PRK01029 306 RIYIMQIDPEGQS---PRLLTK-------------KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRD-YQLT 367 (428)
T ss_pred eEEEEECcccccc---eEEecc-------------CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCe-EEcc
Confidence 5554 3321100 111111 123567789999999888653 2 5799999974 443 3333
Q ss_pred cccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290 367 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (409)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s 403 (409)
...... ....|+|||+.|+..+
T Consensus 368 ~~~~~~---------------~~p~wSpDG~~L~f~~ 389 (428)
T PRK01029 368 TSPENK---------------ESPSWAIDSLHLVYSA 389 (428)
T ss_pred CCCCCc---------------cceEECCCCCEEEEEE
Confidence 222111 3789999999887544
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.27 E-value=2.7e-08 Score=86.41 Aligned_cols=252 Identities=10% Similarity=0.094 Sum_probs=139.1
Q ss_pred ECCCCCEEEEEec----------CCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCc-cccccc
Q 015290 40 FDKTGDYLAVGDR----------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP-EFDYLK 108 (409)
Q Consensus 40 ~~~~~~~la~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~~~~~~ 108 (409)
++|||+.|+++.. +..|.+||..+.+. +.++.--.. ++.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~---------------------------~~~i~~p~~p~~~--- 102 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP---------------------------IADIELPEGPRFL--- 102 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE---------------------------EeEEccCCCchhh---
Confidence 9999998887765 67999999998773 222221110 000
Q ss_pred cceeccceEEEEEEecCCCCEEEEEe-C-CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290 109 SLEIEEKINRVRWCAAPNGSMFILST-N-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (409)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (409)
.......+++ ++||++|+.+. . +..|.+.|+.+++.......... ...+...+.... ..
T Consensus 103 ---~~~~~~~~~l--s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~----~~vy~t~e~~~~----------~~ 163 (352)
T TIGR02658 103 ---VGTYPWMTSL--TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC----YHIFPTANDTFF----------MH 163 (352)
T ss_pred ---ccCccceEEE--CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC----cEEEEecCCccE----------EE
Confidence 0012335667 79999998775 3 78999999999988776553111 111111111000 00
Q ss_pred cccccccceeEEEecCCccc--ceeeeeecccccccee-EEEeCC-CCCeEEEecCCeEEEEEccCC----Cceeeeeec
Q 015290 187 HLEWTENMATKIANVGNSVH--ARCQKVYPHAHDFNIN-SISNNS-DCETFVSADDLRINLWNLEIS----DQCFNIVDM 258 (409)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~v~-~l~~~~-~~~~l~~~~d~~i~lwd~~~~----~~~~~~~~~ 258 (409)
+ .|+......++.... ......+ .....++. .-.+.+ +++++.....|+|.+.|+... ...+..+..
T Consensus 164 ~----~Dg~~~~v~~d~~g~~~~~~~~vf-~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR02658 164 C----RDGSLAKVGYGTKGNPKIKPTEVF-HPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTE 238 (352)
T ss_pred e----ecCceEEEEecCCCceEEeeeeee-cCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccc
Confidence 0 022211111111000 0011111 11011100 003445 888888884499999997521 122222111
Q ss_pred CCCcCcCccCceEEEEEeCCCCCEEEEEe----------CCCeEEEEeCCCccccccccccccccccccCCccccccccc
Q 015290 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (409)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (409)
....-.-..+.+.-++++|++ +.++... ..+.|.++|..+++. +..+.. ..
T Consensus 239 ~~~~~~wrP~g~q~ia~~~dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv----i~~i~v--------------G~ 299 (352)
T TIGR02658 239 AEKADGWRPGGWQQVAYHRAR-DRIYLLADQRAKWTHKTASRFLFVVDAKTGKR----LRKIEL--------------GH 299 (352)
T ss_pred cccccccCCCcceeEEEcCCC-CEEEEEecCCccccccCCCCEEEEEECCCCeE----EEEEeC--------------CC
Confidence 100001123445559999999 6555532 225799999988764 233333 24
Q ss_pred ceeeeEeccCCC-EEEEee--cCeEEEEEccCCCcceEEE
Q 015290 329 SISDIKFANDGQ-HLLSRD--YMNLKLWDIRMDSTPVATF 365 (409)
Q Consensus 329 ~i~~~~~s~~g~-~l~sg~--~~~v~iwd~~~~~~~~~~~ 365 (409)
.+..++++|||+ +|++.+ ++.|.+.|..+ ++.+..+
T Consensus 300 ~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t-~k~i~~i 338 (352)
T TIGR02658 300 EIDSINVSQDAKPLLYALSTGDKTLYIFDAET-GKELSSV 338 (352)
T ss_pred ceeeEEECCCCCeEEEEeCCCCCcEEEEECcC-CeEEeee
Confidence 789999999999 777665 38999999986 7888877
No 262
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=1e-09 Score=96.29 Aligned_cols=133 Identities=12% Similarity=0.181 Sum_probs=95.8
Q ss_pred eeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEE--e-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceE
Q 015290 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (409)
Q Consensus 195 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~--~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (409)
++++.++++ ..+... ....++|.++.|+|+++.+++ | .-..+.|+|++ +..+..+ ..++-+
T Consensus 252 ~Lyll~t~g---~s~~V~--L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df---------~egpRN 315 (566)
T KOG2315|consen 252 TLYLLATQG---ESVSVP--LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDF---------PEGPRN 315 (566)
T ss_pred eEEEEEecC---ceEEEe--cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeC---------CCCCcc
Confidence 677777762 222221 345789999999999987776 5 77899999998 5555432 335567
Q ss_pred EEEEeCCCCCEEEEEeC---CCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee--
Q 015290 272 SAEFHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-- 346 (409)
Q Consensus 272 ~~~~~p~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-- 346 (409)
.+-|+|.| ++++.++. .|.+-+||+.+.+. +..+.. ..-+-+.|+|||++++|++
T Consensus 316 ~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K~----i~~~~a---------------~~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 316 TAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRKL----IAKFKA---------------ANTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred ceEECCCC-CEEEEeecCCCCCceEEEeccchhh----cccccc---------------CCceEEEEcCCCcEEEEEecc
Confidence 89999999 98888775 47899999988654 233333 2456689999999999763
Q ss_pred -----cCeEEEEEccCCCcceEEE
Q 015290 347 -----YMNLKLWDIRMDSTPVATF 365 (409)
Q Consensus 347 -----~~~v~iwd~~~~~~~~~~~ 365 (409)
|+.++||++. |..+...
T Consensus 376 PRlrvdNg~Kiwhyt--G~~l~~~ 397 (566)
T KOG2315|consen 376 PRLRVDNGIKIWHYT--GSLLHEK 397 (566)
T ss_pred ccEEecCCeEEEEec--Cceeehh
Confidence 3789999986 7666543
No 263
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=3.7e-10 Score=99.22 Aligned_cols=162 Identities=9% Similarity=0.139 Sum_probs=112.4
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (409)
+.++++.. ++...+|++|+.||.|..||.+.............-
T Consensus 176 ~~lN~v~i--n~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v---------------------------------- 219 (703)
T KOG2321|consen 176 GELNVVSI--NEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSV---------------------------------- 219 (703)
T ss_pred ccceeeee--cCccceEEecccCceEEEecchhhhhheeeeccccc----------------------------------
Confidence 78999999 567778999999999999999887654443321110
Q ss_pred ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEE
Q 015290 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (409)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (409)
...+ .......|+++.|+.+|-.+++| .+|.+.|||++ ...++.+- -.+...+|..
T Consensus 220 ------------~s~p----g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLR-a~~pl~~k------dh~~e~pi~~ 276 (703)
T KOG2321|consen 220 ------------NSHP----GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLR-ASKPLLVK------DHGYELPIKK 276 (703)
T ss_pred ------------CCCc----cccccCcceEEEecCCceeEEeeccCCcEEEEEcc-cCCceeec------ccCCccceee
Confidence 0000 01223458999999999999999 99999999999 44444331 2333467889
Q ss_pred EEEeCCCC-CEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeE
Q 015290 273 AEFHPIYC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL 350 (409)
Q Consensus 273 ~~~~p~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v 350 (409)
+.|.+.+. ..+++. ....++|||-.+++.. ...+. ...++.+++-|++-+++++.+ ..+
T Consensus 277 l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~----asiEp--------------t~~lND~C~~p~sGm~f~Ane~~~m 337 (703)
T KOG2321|consen 277 LDWQDTDQQNKVVSM-DKRILKIWDECTGKPM----ASIEP--------------TSDLNDFCFVPGSGMFFTANESSKM 337 (703)
T ss_pred ecccccCCCceEEec-chHHhhhcccccCCce----eeccc--------------cCCcCceeeecCCceEEEecCCCcc
Confidence 99977632 455544 4567999999888752 33333 456899999999999999875 544
Q ss_pred EEE
Q 015290 351 KLW 353 (409)
Q Consensus 351 ~iw 353 (409)
..|
T Consensus 338 ~~y 340 (703)
T KOG2321|consen 338 HTY 340 (703)
T ss_pred eeE
Confidence 444
No 264
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.24 E-value=2.3e-10 Score=96.28 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=69.3
Q ss_pred cccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEE
Q 015290 215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 293 (409)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~ 293 (409)
.+|-..++.++|+||+++++++ .|..|++-... ....+..+ +.||...|..++.-++ +.|+++|.|++|+
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~yp-a~f~Iesf------clGH~eFVS~isl~~~--~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYP-ATFVIESF------CLGHKEFVSTISLTDN--YLLLSGSGDKTLR 218 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecC-cccchhhh------ccccHhheeeeeeccC--ceeeecCCCCcEE
Confidence 6899999999999999999999 99999998877 34444443 6789999999999987 5799999999999
Q ss_pred EEeCCCcccc
Q 015290 294 LVDMRQSALC 303 (409)
Q Consensus 294 iwd~~~~~~~ 303 (409)
+||+++++..
T Consensus 219 ~Wd~~sgk~L 228 (390)
T KOG3914|consen 219 LWDITSGKLL 228 (390)
T ss_pred EEecccCCcc
Confidence 9999998753
No 265
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.22 E-value=6.9e-10 Score=104.07 Aligned_cols=198 Identities=15% Similarity=0.161 Sum_probs=140.8
Q ss_pred EEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceecc
Q 015290 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (409)
Q Consensus 35 v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (409)
|....+.-+.+.++.+..++.+.+||...... +......+. . -
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~---------------------------~~~i~~~er--~--------~ 132 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSV---------------------------LSKIQSDER--C--------T 132 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCce---------------------------ehhcCCCce--E--------E
Confidence 33344555667888888899999999886653 122222210 0 0
Q ss_pred ceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccc
Q 015290 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (409)
Q Consensus 115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (409)
-..++-+--+++.-++++|+.-+.|.+|+....+
T Consensus 133 l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn---------------------------------------------- 166 (967)
T KOG0974|consen 133 LYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN---------------------------------------------- 166 (967)
T ss_pred EEeEEEEeccCcEEEEEeccccccEEEEeccccC----------------------------------------------
Confidence 0111112115666688888888999999987221
Q ss_pred eeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEE
Q 015290 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (409)
Q Consensus 195 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 273 (409)
.+. .+.+|.+.|..+.++-+|.++++. +|.++++|+++ +.+.... ..-+|...|..+
T Consensus 167 -------------~p~--~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~-s~~~~~~------~~fgHsaRvw~~ 224 (967)
T KOG0974|consen 167 -------------KPI--RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPID-SREVLGC------TGFGHSARVWAC 224 (967)
T ss_pred -------------Ccc--eecccCCceEEEEEccCCcEEEEEecCcceeeeecc-cccccCc------ccccccceeEEE
Confidence 111 127999999999999999999999 99999999999 4443321 156899999999
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEE
Q 015290 274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKL 352 (409)
Q Consensus 274 ~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~i 352 (409)
.|.|+ .+++++.|.+.++|+.....+ ..+..|. ...++.++..++...++|++ |+.+++
T Consensus 225 ~~~~n---~i~t~gedctcrvW~~~~~~l-----~~y~~h~------------g~~iw~~~~~~~~~~~vT~g~Ds~lk~ 284 (967)
T KOG0974|consen 225 CFLPN---RIITVGEDCTCRVWGVNGTQL-----EVYDEHS------------GKGIWKIAVPIGVIIKVTGGNDSTLKL 284 (967)
T ss_pred Eeccc---eeEEeccceEEEEEeccccee-----hhhhhhh------------hcceeEEEEcCCceEEEeeccCcchhh
Confidence 99985 799999999999997665432 3344332 24689999999888888886 599999
Q ss_pred EEccC
Q 015290 353 WDIRM 357 (409)
Q Consensus 353 wd~~~ 357 (409)
||+..
T Consensus 285 ~~l~~ 289 (967)
T KOG0974|consen 285 WDLNG 289 (967)
T ss_pred hhhhc
Confidence 99863
No 266
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.22 E-value=2.1e-10 Score=107.48 Aligned_cols=149 Identities=15% Similarity=0.261 Sum_probs=121.3
Q ss_pred EEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceE
Q 015290 38 IEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 117 (409)
Q Consensus 38 v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 117 (409)
+-++++.-++++|+.-+.|.+|+...... + ..+.||+ +.|.
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~--------------------------p-~~l~GHe------------G~iF 179 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNK--------------------------P-IRLKGHE------------GSIF 179 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCC--------------------------c-ceecccC------------CceE
Confidence 34566777899999999999999883332 1 1578999 9999
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeE
Q 015290 118 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 197 (409)
Q Consensus 118 ~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 197 (409)
++.| +.||.+++++|.|+++|+|++.+.+...-.
T Consensus 180 ~i~~--s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~-------------------------------------------- 213 (967)
T KOG0974|consen 180 SIVT--SLDGRYIASVSDDRSIRLWPIDSREVLGCT-------------------------------------------- 213 (967)
T ss_pred EEEE--ccCCcEEEEEecCcceeeeecccccccCcc--------------------------------------------
Confidence 9999 899999999999999999999987543210
Q ss_pred EEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc-CceEEEEE
Q 015290 198 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EVITSAEF 275 (409)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~ 275 (409)
..+|...|..+.|.|+ .++++ .|-+.++|+.. +..+.. +.+|. ..+..++.
T Consensus 214 ----------------~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~--~~~l~~-------y~~h~g~~iw~~~~ 266 (967)
T KOG0974|consen 214 ----------------GFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN--GTQLEV-------YDEHSGKGIWKIAV 266 (967)
T ss_pred ----------------cccccceeEEEEeccc--eeEEeccceEEEEEecc--cceehh-------hhhhhhcceeEEEE
Confidence 1589999999999998 78888 99999999776 444444 55564 56899999
Q ss_pred eCCCCCEEEEEeCCCeEEEEeCCC
Q 015290 276 HPIYCNLLAYSSSRGFVRLVDMRQ 299 (409)
Q Consensus 276 ~p~~~~~l~s~s~dg~i~iwd~~~ 299 (409)
.++. ..+++++.|+.+++||+..
T Consensus 267 ~~~~-~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 267 PIGV-IIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred cCCc-eEEEeeccCcchhhhhhhc
Confidence 9987 8999999999999999865
No 267
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.22 E-value=1.5e-09 Score=87.70 Aligned_cols=125 Identities=13% Similarity=0.030 Sum_probs=93.0
Q ss_pred eeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCC
Q 015290 221 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (409)
Q Consensus 221 v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~ 299 (409)
..++.|++.+..++++ .+|.+.+-+.. .....+. ..++.|....+.+.|+...++++++|+.|+.+..||+|.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t-~~~le~v-----q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~ 197 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYET-EMVLEKV-----QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI 197 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecc-eeeeeec-----ccccccceeeeeeecccCCCceEEecCCCceEEEEEecC
Confidence 4578899999999999 99998854443 1222221 237889999999999988889999999999999999994
Q ss_pred ccccccccccccccccccCCcccccccccceeeeEecc-CCCEEEEeec-CeEEEEEccCCCcceEEEe
Q 015290 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTPVATFK 366 (409)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~ 366 (409)
.+. .+|.. ..-|...|.++.-+| ++.+|++|+. ..|++||.++-++++..-+
T Consensus 198 p~~-----~i~~n----------~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~ 251 (339)
T KOG0280|consen 198 PKT-----FIWHN----------SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK 251 (339)
T ss_pred Ccc-----eeeec----------ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc
Confidence 332 33332 133567788888776 4789999984 9999999996577765544
No 268
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.17 E-value=8.4e-08 Score=94.65 Aligned_cols=309 Identities=11% Similarity=0.055 Sum_probs=177.7
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEE----eccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILF----ETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (409)
..+.|.++.|-++...++.+..+|.|.+. +..+... +.+..+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-------------------------E~VG~v--------- 119 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-------------------------EIVGSV--------- 119 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-------------------------EEEEEE---------
Confidence 35789999999999999999999999998 4333221 122222
Q ss_pred cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeee----------------------eccCCCcccc--
Q 015290 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI----------------------KEMDHFPFVS-- 162 (409)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~----------------------~~~~~~~~~~-- 162 (409)
+..|.+++| |||+..|+.+..++++.+..-. ...... ..++.+....
T Consensus 120 ------d~GI~a~~W--SPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa 190 (928)
T PF04762_consen 120 ------DSGILAASW--SPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAA 190 (928)
T ss_pred ------cCcEEEEEE--CCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhh
Confidence 278999999 8999999999999988776421 111000 0011000000
Q ss_pred ------cc-----cccccccCceeccCCCCCceeecccc--ccc--ceeEEEecCCcccceeeeeeccccccceeEEEeC
Q 015290 163 ------SE-----NTLLAEKNFMNEHNPPSFAHGYHLEW--TEN--MATKIANVGNSVHARCQKVYPHAHDFNINSISNN 227 (409)
Q Consensus 163 ------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 227 (409)
.+ .....+.......|.+++.+++.... ..+ ..+|+|+-+... ..+. ..-.+--.+++|.
T Consensus 191 ~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L----~stS-E~v~gLe~~l~Wr 265 (928)
T PF04762_consen 191 RQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGEL----QSTS-EPVDGLEGALSWR 265 (928)
T ss_pred hhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceE----Eecc-ccCCCccCCccCC
Confidence 00 00013345566678888888887776 333 589999987421 1111 2222334578999
Q ss_pred CCCCeEEEe-c---CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccc
Q 015290 228 SDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303 (409)
Q Consensus 228 ~~~~~l~~~-~---d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~ 303 (409)
|.|+++|+. . ...|.+|.-+ |-.-..+.++ +......|..+.|++++ .+||..-.|. |.+|-..+....
T Consensus 266 PsG~lIA~~q~~~~~~~VvFfErN--GLrhgeF~l~---~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWY 338 (928)
T PF04762_consen 266 PSGNLIASSQRLPDRHDVVFFERN--GLRHGEFTLR---FDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWY 338 (928)
T ss_pred CCCCEEEEEEEcCCCcEEEEEecC--CcEeeeEecC---CCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEE
Confidence 999999986 3 3466777755 4333333333 23455678999999999 9999877655 999988775322
Q ss_pred ccccccccccccccCCcccccccccceeeeEeccCC-CEEEEeec-CeEEEEEcc----CC-------CcceEEEecccC
Q 015290 304 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDY-MNLKLWDIR----MD-------STPVATFKIHEH 370 (409)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~sg~~-~~v~iwd~~----~~-------~~~~~~~~~~~~ 370 (409)
.+..-.+.. ...+..+.|+|.. ..|...+. +.+..+++. .. ...+..+.|..-
T Consensus 339 LKqei~~~~--------------~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~l 404 (928)
T PF04762_consen 339 LKQEIRFSS--------------SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKL 404 (928)
T ss_pred EEEEEEccC--------------CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeE
Confidence 211111111 1234447888854 23444332 444443322 10 011222222111
Q ss_pred --------cccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 371 --------LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 371 --------~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
.++--...++......|.+++|++++..+|+-..||+|
T Consensus 405 llTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l 450 (928)
T PF04762_consen 405 LLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSL 450 (928)
T ss_pred EEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCE
Confidence 11110111111122235799999999888888888865
No 269
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=2.4e-08 Score=90.34 Aligned_cols=198 Identities=14% Similarity=0.118 Sum_probs=116.4
Q ss_pred CcEEEEEECCCCCE-EEEEecC---CeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290 33 DIVSAIEFDKTGDY-LAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (409)
Q Consensus 33 ~~v~~v~~~~~~~~-la~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (409)
+.+....|+|||+. ++..+.+ ..|.++|+.+++. +.+. ...
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-------------------------~~lt---~~~------- 232 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-------------------------EKIA---SSQ------- 232 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-------------------------EEEe---cCC-------
Confidence 46778999999985 6654443 4588888877653 1122 122
Q ss_pred cceeccceEEEEEEecCCCCEEEEE-eCC--CeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290 109 SLEIEEKINRVRWCAAPNGSMFILS-TND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (409)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~-~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (409)
+......| +|||+.++.. +.+ ..|.++|+.++....+.
T Consensus 233 -----g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT-------------------------------- 273 (419)
T PRK04043 233 -----GMLVVSDV--SKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQIT-------------------------------- 273 (419)
T ss_pred -----CcEEeeEE--CCCCCEEEEEEccCCCcEEEEEECCCCcEEEcc--------------------------------
Confidence 44556779 8999877654 333 45666676666443321
Q ss_pred ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCC--eEEEEEccCCCceeeeeecCCC
Q 015290 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPS 261 (409)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~--~i~lwd~~~~~~~~~~~~~~~~ 261 (409)
.+........|+|||+.|+.. ..+ .|.+.|+. .+...+..
T Consensus 274 ------------------------------~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~-~g~~~rlt----- 317 (419)
T PRK04043 274 ------------------------------NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN-SGSVEQVV----- 317 (419)
T ss_pred ------------------------------cCCCccCccEECCCCCEEEEEECCCCCceEEEEECC-CCCeEeCc-----
Confidence 111112234799999887764 333 57777776 44433321
Q ss_pred cCcCccCceEEEEEeCCCCCEEEEEeCC---------CeEEEEeCCCccccccccccccccccccCCcccccccccceee
Q 015290 262 NMDDLTEVITSAEFHPIYCNLLAYSSSR---------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (409)
Q Consensus 262 ~~~~~~~~v~~~~~~p~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 332 (409)
..+. ....|+|+| +.++..+.. ..|.+.|+.++.. +.+.. ......
T Consensus 318 -~~g~----~~~~~SPDG-~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-----~~LT~--------------~~~~~~ 372 (419)
T PRK04043 318 -FHGK----NNSSVSTYK-NYIVYSSRETNNEFGKNTFNLYLISTNSDYI-----RRLTA--------------NGVNQF 372 (419)
T ss_pred -cCCC----cCceECCCC-CEEEEEEcCCCcccCCCCcEEEEEECCCCCe-----EECCC--------------CCCcCC
Confidence 1111 124899999 777665543 2677788877653 22222 012335
Q ss_pred eEeccCCCEEEEee-c---CeEEEEEccCCCcceEEEec
Q 015290 333 IKFANDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFKI 367 (409)
Q Consensus 333 ~~~s~~g~~l~sg~-~---~~v~iwd~~~~~~~~~~~~~ 367 (409)
..|+|||+.|+... . ..+.+.++. +.....+..
T Consensus 373 p~~SPDG~~I~f~~~~~~~~~L~~~~l~--g~~~~~l~~ 409 (419)
T PRK04043 373 PRFSSDGGSIMFIKYLGNQSALGIIRLN--YNKSFLFPL 409 (419)
T ss_pred eEECCCCCEEEEEEccCCcEEEEEEecC--CCeeEEeec
Confidence 88999999887653 2 346666664 555555543
No 270
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.17 E-value=1.4e-08 Score=87.67 Aligned_cols=145 Identities=13% Similarity=0.147 Sum_probs=108.5
Q ss_pred cccccceeEEEeCCCCCeEEEe-cCC-eEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeE
Q 015290 215 HAHDFNINSISNNSDCETFVSA-DDL-RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 292 (409)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~-~d~-~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i 292 (409)
-++...|.-..+..+++-++.| .|| .+-++|.+ .++... +.+.-+.|.++..+|+| ++++.+.....|
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~-~~e~kr--------~e~~lg~I~av~vs~dG-K~~vvaNdr~el 425 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD-GGEVKR--------IEKDLGNIEAVKVSPDG-KKVVVANDRFEL 425 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecC-CceEEE--------eeCCccceEEEEEcCCC-cEEEEEcCceEE
Confidence 4677778888888888888999 887 89999998 554333 34455789999999999 999999999999
Q ss_pred EEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee----c-CeEEEEEccCCCcceEEEec
Q 015290 293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y-MNLKLWDIRMDSTPVATFKI 367 (409)
Q Consensus 293 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~----~-~~v~iwd~~~~~~~~~~~~~ 367 (409)
.+.|+.++.. +...... .+-|+..+|||+++++|-+- - ..|++||+.. ++....-..
T Consensus 426 ~vididngnv-----~~idkS~------------~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy~vTT~ 487 (668)
T COG4946 426 WVIDIDNGNV-----RLIDKSE------------YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-GKIYDVTTP 487 (668)
T ss_pred EEEEecCCCe-----eEecccc------------cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC-CeEEEecCC
Confidence 9999999874 3333311 35799999999999999762 2 7899999974 454433322
Q ss_pred ccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290 368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (409)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s 403 (409)
...- ++-+|.|||++|..-|
T Consensus 488 ta~D----------------fsPaFD~d~ryLYfLs 507 (668)
T COG4946 488 TAYD----------------FSPAFDPDGRYLYFLS 507 (668)
T ss_pred cccc----------------cCcccCCCCcEEEEEe
Confidence 2221 4789999999876543
No 271
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.13 E-value=1.9e-07 Score=92.15 Aligned_cols=295 Identities=14% Similarity=0.163 Sum_probs=166.6
Q ss_pred CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhh--cccccccCCCceeeeeeecCCCccc-----
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEK--QMDFTSTSHPEYRYKTEFQSHEPEF----- 104 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~~----- 104 (409)
...|.+++||||++.||....++++.+...+=.-....+. ....++. +-..-|.. --+.|+|-..+.
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l-~~~~~~~~~~VsVGWGk-----KeTQF~Gs~gK~aa~~~ 193 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPL-DSDDFGESKHVSVGWGK-----KETQFHGSAGKAAARQL 193 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeec-CccccCCCceeeeccCc-----ccCccCcchhhhhhhhc
Confidence 5689999999999999999989988876532110000000 0000000 00000000 001111111100
Q ss_pred -cc------cccceeccceEEEEEEecCCCCEEEEEeC------CCeEEEEEcCCceeeeeeccCCCccccccccccccc
Q 015290 105 -DY------LKSLEIEEKINRVRWCAAPNGSMFILSTN------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (409)
Q Consensus 105 -~~------~~~~~~~~~v~~l~~~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (409)
++ ...+..+..-..|+| ..||++||+.+. -+.+|||+-+ |.+....+ +..+
T Consensus 194 ~~p~~~~~d~~~~s~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-------------~v~g 257 (928)
T PF04762_consen 194 RDPTVPKVDEGKLSWDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-------------PVDG 257 (928)
T ss_pred cCCCCCccccCccccCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-------------cCCC
Confidence 00 011112256678999 799999998764 2578999865 44433321 3344
Q ss_pred CceeccCCCCCceeeccccccc-ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCC
Q 015290 172 NFMNEHNPPSFAHGYHLEWTEN-MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS 249 (409)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~ 249 (409)
..-...|.|++.++++.....+ ..|.+|.-+.-..++..-.+ ......|..++|++++..||.. .|. |.+|-....
T Consensus 258 Le~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~-~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 258 LEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRF-DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred ccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCC-CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 4556678888888888876333 37888877665444432222 3456678999999999999998 555 999988722
Q ss_pred Ccee-eeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCC----Ccccc---c---------c--ccccc
Q 015290 250 DQCF-NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR----QSALC---D---------H--SARIL 310 (409)
Q Consensus 250 ~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~----~~~~~---~---------~--~~~~~ 310 (409)
.-.+ +.+. +. ....+..+.|+|..+..|.....+|.+..+++. .+... . . .+..+
T Consensus 336 HWYLKqei~-----~~-~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf 409 (928)
T PF04762_consen 336 HWYLKQEIR-----FS-SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPF 409 (928)
T ss_pred EEEEEEEEE-----cc-CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecc
Confidence 2112 1211 11 122344599999887788888877776655432 11100 0 0 00111
Q ss_pred cccccccCCccccc-ccccceeeeEeccCCCEEEEe-ecCeEEEEEccC
Q 015290 311 RDAAESHGSKSFFT-EIIASISDIKFANDGQHLLSR-DYMNLKLWDIRM 357 (409)
Q Consensus 311 ~~~~~~~~~~~~~~-~~~~~i~~~~~s~~g~~l~sg-~~~~v~iwd~~~ 357 (409)
.. ..-|+++..+. ....+|..++|++++..+|+- ++|.|.+|....
T Consensus 410 ~~-a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 410 RR-AVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred cc-cCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 11 22233332222 235789999999998766665 569999998653
No 272
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=5.1e-09 Score=89.61 Aligned_cols=285 Identities=14% Similarity=0.132 Sum_probs=179.9
Q ss_pred cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (409)
Q Consensus 30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (409)
-|.+.|+.+.-+ -.+++.+++.||.++.|.-..-. ..+.+..+..|-
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~is------------------------GvEfVKhFraHL-------- 53 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRIS------------------------GVEFVKHFRAHL-------- 53 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCcc------------------------ceeehhhhHHHH--------
Confidence 388888887665 45799999999999999855311 123556677777
Q ss_pred ceeccceEEEEEEecCCCCEEEEEeC-CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCC-Cceeec
Q 015290 110 LEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS-FAHGYH 187 (409)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 187 (409)
..|.+++- +.++..++|.+. |+.++++|+.+-.+....+...-+.. .....++. ..-+..
T Consensus 54 ----~~I~sl~~--S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~------------a~wv~skGd~~s~IA 115 (558)
T KOG0882|consen 54 ----GVILSLAV--SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF------------AEWVTSKGDKISLIA 115 (558)
T ss_pred ----HHHHhhhc--cccceeEeeccCcccceeEEEeeccchhhhcccccCCCc------------eEEecCCCCeeeeEE
Confidence 78888888 789999999777 99999999987765544333222211 11111111 111122
Q ss_pred ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCc-eee--eeecCCC--
Q 015290 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ-CFN--IVDMKPS-- 261 (409)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~-~~~--~~~~~~~-- 261 (409)
.+...++.+.++|-...... ...+-.-|..+|.++.+++.+..+++. ..|.|.-|.....-+ +-. .+.++..
T Consensus 116 Vs~~~sg~i~VvD~~~d~~q--~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTd 193 (558)
T KOG0882|consen 116 VSLFKSGKIFVVDGFGDFCQ--DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETD 193 (558)
T ss_pred eecccCCCcEEECCcCCcCc--cceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccch
Confidence 22234566777766543221 112225689999999999999999999 899999999872000 000 0111111
Q ss_pred --cCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCc---------------cccc
Q 015290 262 --NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK---------------SFFT 324 (409)
Q Consensus 262 --~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 324 (409)
.+..-.....++.|+|++ ..+.+-+.|..|++++.+++++....-......+..+... ..+.
T Consensus 194 Ly~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverele 272 (558)
T KOG0882|consen 194 LYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELE 272 (558)
T ss_pred hhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHh
Confidence 123345667899999999 9999999999999999999875321111110000011000 0122
Q ss_pred ccc-cceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEeccc
Q 015290 325 EII-ASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHE 369 (409)
Q Consensus 325 ~~~-~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~ 369 (409)
.|. ..-+.+.|...|++|+.|+--.|++.++.+ +.+...+...+
T Consensus 273 k~~~~~~~~~~fdes~~flly~t~~gikvin~~t-n~v~ri~gk~e 317 (558)
T KOG0882|consen 273 KHGSTVGTNAVFDESGNFLLYGTILGIKVINLDT-NTVVRILGKDE 317 (558)
T ss_pred hhcCcccceeEEcCCCCEEEeecceeEEEEEeec-CeEEEEeccch
Confidence 233 244668899999999999887789999986 66666654433
No 273
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=9.4e-08 Score=86.56 Aligned_cols=141 Identities=9% Similarity=0.072 Sum_probs=84.1
Q ss_pred ccceeEEEeCCCCCeEEEe--c--CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEe-CCC--
Q 015290 218 DFNINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRG-- 290 (409)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~--~--d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s-~dg-- 290 (409)
.+......|+|||+.++.. . +..|.++|+. .+.... +..+........|+||| +.|+..+ ..+
T Consensus 232 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~-~g~~~~--------LT~~~~~d~~p~~SPDG-~~I~F~Sdr~g~~ 301 (419)
T PRK04043 232 QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN-TKTLTQ--------ITNYPGIDVNGNFVEDD-KRIVFVSDRLGYP 301 (419)
T ss_pred CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC-CCcEEE--------cccCCCccCccEECCCC-CEEEEEECCCCCc
Confidence 3445567899999888754 3 4567788876 444332 22222223456899999 6666555 333
Q ss_pred eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec----------CeEEEEEccCCCc
Q 015290 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----------MNLKLWDIRMDST 360 (409)
Q Consensus 291 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~----------~~v~iwd~~~~~~ 360 (409)
.|.+.|+.+++.. ++... +. ....|+|||++|+.... ..|.+.|+.. +.
T Consensus 302 ~Iy~~dl~~g~~~----rlt~~---------------g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~ 360 (419)
T PRK04043 302 NIFMKKLNSGSVE----QVVFH---------------GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-DY 360 (419)
T ss_pred eEEEEECCCCCeE----eCccC---------------CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-CC
Confidence 5777788766531 11111 01 12489999998885431 2678888864 33
Q ss_pred ceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290 361 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRR 406 (409)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg 406 (409)
...+...... ....|+|||+.|+..+.++
T Consensus 361 -~~~LT~~~~~----------------~~p~~SPDG~~I~f~~~~~ 389 (419)
T PRK04043 361 -IRRLTANGVN----------------QFPRFSSDGGSIMFIKYLG 389 (419)
T ss_pred -eEECCCCCCc----------------CCeEECCCCCEEEEEEccC
Confidence 3344332211 2589999999887765543
No 274
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.02 E-value=1.1e-07 Score=82.25 Aligned_cols=139 Identities=21% Similarity=0.275 Sum_probs=105.3
Q ss_pred cceEEEEEEecCCCCEEEEEeCCC-eEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDK-TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (409)
+.|.-..+ ..+++-++.|..|| .+-|+|..+++.+++
T Consensus 360 ~~VrY~r~--~~~~e~~vigt~dgD~l~iyd~~~~e~kr~---------------------------------------- 397 (668)
T COG4946 360 GGVRYRRI--QVDPEGDVIGTNDGDKLGIYDKDGGEVKRI---------------------------------------- 397 (668)
T ss_pred CceEEEEE--ccCCcceEEeccCCceEEEEecCCceEEEe----------------------------------------
Confidence 67888888 57778899999999 899999999877665
Q ss_pred cceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceE
Q 015290 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (409)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (409)
...-+.|.++..+|+|++++.+ ....|.+.|+. ++..... -....+-|+
T Consensus 398 ----------------------e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid-ngnv~~i-------dkS~~~lIt 447 (668)
T COG4946 398 ----------------------EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID-NGNVRLI-------DKSEYGLIT 447 (668)
T ss_pred ----------------------eCCccceEEEEEcCCCcEEEEEcCceEEEEEEec-CCCeeEe-------cccccceeE
Confidence 3345678899999999999999 88899999998 5544332 233456799
Q ss_pred EEEEeCCCCCEEEEEeCCC----eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290 272 SAEFHPIYCNLLAYSSSRG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (409)
Q Consensus 272 ~~~~~p~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 343 (409)
.+.|+|++ +++|.+--+| .|+++|+.+++.. ..... .+.=.+.+|.|||++|.
T Consensus 448 df~~~~ns-r~iAYafP~gy~tq~Iklydm~~~Kiy----~vTT~--------------ta~DfsPaFD~d~ryLY 504 (668)
T COG4946 448 DFDWHPNS-RWIAYAFPEGYYTQSIKLYDMDGGKIY----DVTTP--------------TAYDFSPAFDPDGRYLY 504 (668)
T ss_pred EEEEcCCc-eeEEEecCcceeeeeEEEEecCCCeEE----EecCC--------------cccccCcccCCCCcEEE
Confidence 99999999 9999876554 6899999987642 11111 12334567888888765
No 275
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.02 E-value=1.3e-07 Score=82.53 Aligned_cols=294 Identities=13% Similarity=0.098 Sum_probs=164.9
Q ss_pred CcEEEEEECCCCCEEEEEecCC---------------eEEEEeccCCcCCCCccchhhhhhhcccc--cccC---CCcee
Q 015290 33 DIVSAIEFDKTGDYLAVGDRGG---------------RVILFETVGGKNTPNQHISRSELEKQMDF--TSTS---HPEYR 92 (409)
Q Consensus 33 ~~v~~v~~~~~~~~la~~~~dg---------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~ 92 (409)
..|..+.|+|.++||.+=+..+ .+.+||..++.. ...+.....+ -|.. .-.-+
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~i-------v~sf~~~~q~~~~Wp~~k~s~~D~ 144 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMI-------VFSFNGISQPYLGWPVLKFSIDDK 144 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCcee-------EeeccccCCcccccceeeeeecch
Confidence 4688999999999999865443 389999988764 2222222111 1100 00000
Q ss_pred eeeeecCCC---------ccccccccceeccceEEEEEEecCCCCEEEE-----EeCCCeEEEEEcCCceeeeeeccCCC
Q 015290 93 YKTEFQSHE---------PEFDYLKSLEIEEKINRVRWCAAPNGSMFIL-----STNDKTIKLWKVRDQKVKKIKEMDHF 158 (409)
Q Consensus 93 ~~~~~~~h~---------~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~~~~~ 158 (409)
+...+-+|+ .+-.+...+. ...|....|+|..++..|+. .+.++++++|.+..+.......+-.-
T Consensus 145 y~ARvv~~sl~i~e~t~n~~~~p~~~lr-~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~ 223 (561)
T COG5354 145 YVARVVGSSLYIHEITDNIEEHPFKNLR-PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV 223 (561)
T ss_pred hhhhhccCeEEEEecCCccccCchhhcc-ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee
Confidence 111111111 0000111222 15688888855334555554 36778999999875554433221100
Q ss_pred cccccccccccccCceeccCCCCCceeeccc---c----c--ccceeEEEecCCcccceeeeeeccccccceeEEEeCCC
Q 015290 159 PFVSSENTLLAEKNFMNEHNPPSFAHGYHLE---W----T--ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD 229 (409)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 229 (409)
.-+..-++..+.++.... . . ....+.|++++. ..++.. ....++|...+|.|.
T Consensus 224 -------------~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e----~~i~V~-~~~~~pVhdf~W~p~ 285 (561)
T COG5354 224 -------------SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE----RSIPVE-KDLKDPVHDFTWEPL 285 (561)
T ss_pred -------------cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc----ccccee-ccccccceeeeeccc
Confidence 001111111111111000 0 0 012566666652 222222 245789999999999
Q ss_pred CCeEEE--e-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC---CeEEEEeCCCcccc
Q 015290 230 CETFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALC 303 (409)
Q Consensus 230 ~~~l~~--~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d---g~i~iwd~~~~~~~ 303 (409)
++.+++ | .+..+.++|++ +..... ++ ...-..+.|+|.+ ++++.++.| |.+-+||......+
T Consensus 286 S~~F~vi~g~~pa~~s~~~lr--~Nl~~~-------~P--e~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf~~ 353 (561)
T COG5354 286 SSRFAVISGYMPASVSVFDLR--GNLRFY-------FP--EQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRFKV 353 (561)
T ss_pred CCceeEEecccccceeecccc--cceEEe-------cC--CcccccccccCcc-cEEEEecCCccccceEEeccCCceEE
Confidence 887765 6 78999999998 333332 11 2233578899999 888887765 67999998775432
Q ss_pred ccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-------cCeEEEEEccCCCcceEEEecccCcccccc
Q 015290 304 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-------YMNLKLWDIRMDSTPVATFKIHEHLRPKLC 376 (409)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-------~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 376 (409)
...+.. ....-+.|+|||+++.+.. |..|+|||+. +..+. ..
T Consensus 354 ---~~~~~~---------------~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~--g~~~f------el----- 402 (561)
T COG5354 354 ---AGAFNG---------------LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY--GAKVF------EL----- 402 (561)
T ss_pred ---EEEeec---------------CCceEeeccCCceEEEecCCCcccccCcceEEEEec--Cchhh------hh-----
Confidence 112222 2445678999999988642 3689999996 44433 11
Q ss_pred cccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290 377 DLYNNDSIFDKFECSVSGDGLHFATGSYRR 406 (409)
Q Consensus 377 ~~~~~~~~~~v~~~~~spdg~~l~s~s~dg 406 (409)
+.+.|.|.|++..+.|.+.
T Consensus 403 -----------~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 403 -----------TNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred -----------hhccccCCcccceeeccCC
Confidence 3688888887776665543
No 276
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=2.1e-07 Score=82.02 Aligned_cols=267 Identities=9% Similarity=0.088 Sum_probs=155.9
Q ss_pred EEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceecc
Q 015290 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (409)
Q Consensus 35 v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (409)
=+-+.|||-|.||+|--..| |.+|--.+-.. ++. -.|.
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r---------------------------~~R-F~Hp------------- 250 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDR---------------------------IQR-FYHP------------- 250 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHH---------------------------HHh-ccCC-------------
Confidence 35689999999999988776 88997554321 111 2343
Q ss_pred ceEEEEEEecCCCCEEEEEeC-----------CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc
Q 015290 115 KINRVRWCAAPNGSMFILSTN-----------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (409)
Q Consensus 115 ~v~~l~~~~s~~~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (409)
.|.-+.| ||+.+||+|-+. ...+.|||+.+|...+.+..-.. .....--..++.+..
T Consensus 251 ~Vq~idf--SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~----------~~~~WP~frWS~DdK 318 (698)
T KOG2314|consen 251 GVQFIDF--SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKS----------PYLKWPIFRWSHDDK 318 (698)
T ss_pred Cceeeec--CCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCC----------CccccceEEeccCCc
Confidence 6888999 899999999643 15799999999987765442100 011111222444555
Q ss_pred eeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--c----CCeEEEEEccCCCceeeeee
Q 015290 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D----DLRINLWNLEISDQCFNIVD 257 (409)
Q Consensus 184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~----d~~i~lwd~~~~~~~~~~~~ 257 (409)
+++... ...|.+++......... + .-.-..|....|+|.++.||.= . -..+.|-.+. .++.+++.
T Consensus 319 y~Arm~---~~sisIyEtpsf~lld~-K---slki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evP-s~~~iRt~- 389 (698)
T KOG2314|consen 319 YFARMT---GNSISIYETPSFMLLDK-K---SLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVP-SKREIRTK- 389 (698)
T ss_pred eeEEec---cceEEEEecCceeeecc-c---ccCCccccCcccCCCcceEEEEcccccCCcceEEEEecC-ccceeeec-
Confidence 555443 35677776543111000 0 1123457788999999888852 2 2245566665 44444431
Q ss_pred cCCCcCcCccCceEEEEEeCCCCCEEEEEe----------CCCeEEEEeCCCccccccccccccccccccCCcccccccc
Q 015290 258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (409)
Q Consensus 258 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (409)
.-+.-.=..+-|-.+| .+|+.-- .=..+-|+.++..... +...+. .
T Consensus 390 ------nlfnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp---ve~vel--------------k 445 (698)
T KOG2314|consen 390 ------NLFNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP---VEVVEL--------------K 445 (698)
T ss_pred ------cceeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeeccCCC---ceeeec--------------c
Confidence 1111122345677777 6666421 1123556666654432 222333 4
Q ss_pred cceeeeEeccCCCEEEE--eec--CeEEEEEccCCC---cceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEE
Q 015290 328 ASISDIKFANDGQHLLS--RDY--MNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA 400 (409)
Q Consensus 328 ~~i~~~~~s~~g~~l~s--g~~--~~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 400 (409)
..|...+|-|.|.-+++ |.+ .++.+|.+.+.. +++..+.... . ..+.|+|.|++++
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~-~----------------N~vfwsPkG~fvv 508 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKF-A----------------NTVFWSPKGRFVV 508 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccc-c----------------ceEEEcCCCcEEE
Confidence 57899999999987664 433 889999987312 2233333211 1 4899999999988
Q ss_pred EcccC
Q 015290 401 TGSYR 405 (409)
Q Consensus 401 s~s~d 405 (409)
.+..-
T Consensus 509 va~l~ 513 (698)
T KOG2314|consen 509 VAALV 513 (698)
T ss_pred EEEec
Confidence 76543
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.00 E-value=4.8e-07 Score=91.12 Aligned_cols=178 Identities=12% Similarity=0.096 Sum_probs=96.9
Q ss_pred eeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCC--CcCcC------ccCceEEEEEeCCCCCEEEEEeCCC
Q 015290 221 INSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKP--SNMDD------LTEVITSAEFHPIYCNLLAYSSSRG 290 (409)
Q Consensus 221 v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~--~~~~~------~~~~v~~~~~~p~~~~~l~s~s~dg 290 (409)
...++++|+ +..+++. .++.|++||.. .+.. ..+.... ....+ .-.....++++|++..++++-+.++
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~-~g~v-~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~ 762 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNIS-DGVT-RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESS 762 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECC-CCeE-EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCC
Confidence 357899995 5555555 78999999987 3332 2211000 00011 1134578999999833666667789
Q ss_pred eEEEEeCCCccccccccccccc-cccccCCccccc--------ccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCc
Q 015290 291 FVRLVDMRQSALCDHSARILRD-AAESHGSKSFFT--------EIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDST 360 (409)
Q Consensus 291 ~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--------~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~ 360 (409)
.|++||+.++... .... ....+.....+. ..-.....++++++|+++++-.. +.|++||..+ +.
T Consensus 763 ~Irv~D~~tg~~~-----~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g~ 836 (1057)
T PLN02919 763 SIRALDLKTGGSR-----LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-KR 836 (1057)
T ss_pred eEEEEECCCCcEE-----EEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-Ce
Confidence 9999999875421 1100 000000000000 01123468899999987666654 9999999874 43
Q ss_pred ceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 361 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
. ..+.+....... ..............++++++|+.+++.+.++.|
T Consensus 837 v-~tiaG~G~~G~~-dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 837 V-TTLAGTGKAGFK-DGKALKAQLSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred E-EEEeccCCcCCC-CCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence 3 333332211000 000000001122589999999988887777654
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.99 E-value=4.8e-07 Score=91.11 Aligned_cols=239 Identities=12% Similarity=0.126 Sum_probs=133.7
Q ss_pred cEEEEEECCCCCEEEEEe-cCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCc-cccc----c
Q 015290 34 IVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP-EFDY----L 107 (409)
Q Consensus 34 ~v~~v~~~~~~~~la~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~~~~----~ 107 (409)
.-..|++++++..|+++. .++.|+++|..++.. .++.+-.. ..++ .
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V----------------------------~tlag~G~~g~~~~gg~~ 676 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETV----------------------------RTLAGNGTKGSDYQGGKK 676 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE----------------------------EEEeccCcccCCCCCChh
Confidence 357889998887666654 456899999876542 11211000 0000 0
Q ss_pred ccceeccceEEEEEEecC-CCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290 108 KSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (409)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (409)
.....-.....+++ ++ ++..+++.+.++.|++||..++........ +.....
T Consensus 677 ~~~~~ln~P~gVa~--dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~---------------G~~~~~---------- 729 (1057)
T PLN02919 677 GTSQVLNSPWDVCF--EPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGD---------------GYERNL---------- 729 (1057)
T ss_pred hhHhhcCCCeEEEE--ecCCCeEEEEECCCCeEEEEECCCCeEEEEecC---------------CccccC----------
Confidence 00000023467899 56 566667778889999999887654322110 000000
Q ss_pred cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCC----
Q 015290 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKP---- 260 (409)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~---- 260 (409)
++ .... ...-.....++++|+++.|+++ .++.|++||+. .+.........+
T Consensus 730 ------~g-------------~~~~---~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~-tg~~~~~~gg~~~~~~ 786 (1057)
T PLN02919 730 ------NG-------------SSGT---STSFAQPSGISLSPDLKELYIADSESSSIRALDLK-TGGSRLLAGGDPTFSD 786 (1057)
T ss_pred ------CC-------------Cccc---cccccCccEEEEeCCCCEEEEEECCCCeEEEEECC-CCcEEEEEecccccCc
Confidence 00 0000 0111345679999999866655 78999999987 332211110000
Q ss_pred --CcCcC--------ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccC--Cccccccccc
Q 015290 261 --SNMDD--------LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG--SKSFFTEIIA 328 (409)
Q Consensus 261 --~~~~~--------~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 328 (409)
..+.. .-.....++++++| .++++-+.++.|++||..++... .+.. ..... .-....+.-.
T Consensus 787 ~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~-----tiaG-~G~~G~~dG~~~~a~l~ 859 (1057)
T PLN02919 787 NLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVT-----TLAG-TGKAGFKDGKALKAQLS 859 (1057)
T ss_pred ccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEE-----EEec-cCCcCCCCCcccccccC
Confidence 00100 11234689999999 88888889999999999876531 1111 00000 0000111223
Q ss_pred ceeeeEeccCCCEEEEeec-CeEEEEEccC
Q 015290 329 SISDIKFANDGQHLLSRDY-MNLKLWDIRM 357 (409)
Q Consensus 329 ~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~ 357 (409)
....++++++|+++++-+. +.|++||+.+
T Consensus 860 ~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 860 EPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred CceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 5678999999987766654 9999999976
No 279
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.98 E-value=6e-06 Score=71.98 Aligned_cols=244 Identities=10% Similarity=0.052 Sum_probs=127.4
Q ss_pred cCCCCEEEEEeC----------CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290 124 APNGSMFILSTN----------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (409)
Q Consensus 124 s~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (409)
+||++.|+.+.. +..|.+||..+.+..........+... ..........++++.+++......+
T Consensus 54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~------~~~~~~~~~ls~dgk~l~V~n~~p~ 127 (352)
T TIGR02658 54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL------VGTYPWMTSLTPDNKTLLFYQFSPS 127 (352)
T ss_pred CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh------ccCccceEEECCCCCEEEEecCCCC
Confidence 799999887754 789999999999887766543222100 0111223344667777777777778
Q ss_pred ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCce-EE
Q 015290 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI-TS 272 (409)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v-~~ 272 (409)
..+.+.|+.+......+.. .+...-.. .++..+++.+.||......+...++.. .-..+. +..-..++ ..
T Consensus 128 ~~V~VvD~~~~kvv~ei~v-----p~~~~vy~-t~e~~~~~~~~Dg~~~~v~~d~~g~~~-~~~~~v--f~~~~~~v~~r 198 (352)
T TIGR02658 128 PAVGVVDLEGKAFVRMMDV-----PDCYHIFP-TANDTFFMHCRDGSLAKVGYGTKGNPK-IKPTEV--FHPEDEYLINH 198 (352)
T ss_pred CEEEEEECCCCcEEEEEeC-----CCCcEEEE-ecCCccEEEeecCceEEEEecCCCceE-Eeeeee--ecCCccccccC
Confidence 8899999876332222111 11111111 112222222333433333333222211 100000 00000000 00
Q ss_pred EEEeC-CCCCEEEEEeCCCeEEEEeCCCccccccc-cccccccccccCCcccccccccceeeeEeccCCCEEEEee----
Q 015290 273 AEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHS-ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---- 346 (409)
Q Consensus 273 ~~~~p-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~---- 346 (409)
-.|.+ +| +++..... |.|.+.|+......... ...+.. .+.. ..+ ..+.+.-++++|+++.+....
T Consensus 199 P~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~-~~~~---~~w--rP~g~q~ia~~~dg~~lyV~~~~~~ 270 (352)
T TIGR02658 199 PAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTE-AEKA---DGW--RPGGWQQVAYHRARDRIYLLADQRA 270 (352)
T ss_pred CceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccc-cccc---ccc--CCCcceeEEEcCCCCEEEEEecCCc
Confidence 04456 66 66555444 99999997654321110 111111 0000 000 012344599999998877632
Q ss_pred -----c--CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCC-eEEEcc-cCCC
Q 015290 347 -----Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YRRD 407 (409)
Q Consensus 347 -----~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~s~s-~dg~ 407 (409)
+ +.|.++|..+ ++.+..+...... ..++++|||+ +|++.+ .++.
T Consensus 271 ~~thk~~~~~V~ViD~~t-~kvi~~i~vG~~~----------------~~iavS~Dgkp~lyvtn~~s~~ 323 (352)
T TIGR02658 271 KWTHKTASRFLFVVDAKT-GKRLRKIELGHEI----------------DSINVSQDAKPLLYALSTGDKT 323 (352)
T ss_pred cccccCCCCEEEEEECCC-CeEEEEEeCCCce----------------eeEEECCCCCeEEEEeCCCCCc
Confidence 1 5899999986 7888877754433 5899999999 777555 3443
No 280
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.97 E-value=1.1e-06 Score=71.59 Aligned_cols=237 Identities=16% Similarity=0.197 Sum_probs=131.5
Q ss_pred EEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccce
Q 015290 37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (409)
Q Consensus 37 ~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 116 (409)
.++.+++|++||.- .|..|.|=...+.-.. .+...+-.... ...=
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~s-------------------------i~~kcqVpkD~---------~PQW 46 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSS-------------------------IIGKCQVPKDP---------NPQW 46 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchh-------------------------eeEEEecCCCC---------Cchh
Confidence 35678899998876 4667777655443210 11222222110 0345
Q ss_pred EEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccccee
Q 015290 117 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 196 (409)
Q Consensus 117 ~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 196 (409)
+.++| |||+..||.+...|+|+++|+....+-.+.......
T Consensus 47 Rkl~W--SpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~------------------------------------- 87 (282)
T PF15492_consen 47 RKLAW--SPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFP------------------------------------- 87 (282)
T ss_pred eEEEE--CCCCcEEEEEcCCCeEEEEecccceeEEcCcccccC-------------------------------------
Confidence 67999 899999999999999999999875543321100000
Q ss_pred EEEecCCcccceeeeeeccccccceeEEEeCC-------CCCeEEEecCCeEEEEEccC----CCceeeeeecCCCcCcC
Q 015290 197 KIANVGNSVHARCQKVYPHAHDFNINSISNNS-------DCETFVSADDLRINLWNLEI----SDQCFNIVDMKPSNMDD 265 (409)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-------~~~~l~~~~d~~i~lwd~~~----~~~~~~~~~~~~~~~~~ 265 (409)
..-...|..|.|-+ .-++|+....|.++=|-+.. .-+....+.. ...
T Consensus 88 ------------------~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf----~~~ 145 (282)
T PF15492_consen 88 ------------------GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSF----SSH 145 (282)
T ss_pred ------------------CccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEe----ccc
Confidence 01112223333311 12344444677766665421 1112222211 122
Q ss_pred ccCceEEEEEeCCCCCEEEEEeCC----C-------eEEEEeCCCcccccccccccccccc-cc--------CCcccc--
Q 015290 266 LTEVITSAEFHPIYCNLLAYSSSR----G-------FVRLVDMRQSALCDHSARILRDAAE-SH--------GSKSFF-- 323 (409)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~s~s~d----g-------~i~iwd~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~-- 323 (409)
+...|.++.++|.. ++|+.|+.. + -+..|.+-++.+.-+.+...+.+-. .+ .....+
T Consensus 146 yp~Gi~~~vy~p~h-~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~ 224 (282)
T PF15492_consen 146 YPHGINSAVYHPKH-RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSR 224 (282)
T ss_pred CCCceeEEEEcCCC-CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeec
Confidence 36789999999998 777776531 1 2667776665433221111111000 00 000011
Q ss_pred -cccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCc
Q 015290 324 -TEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHL 371 (409)
Q Consensus 324 -~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~ 371 (409)
......|..|..||||+.||+.. .|.|.+|++.. -+....++.++.+
T Consensus 225 ~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs-L~~~~~W~~~eqP 273 (282)
T PF15492_consen 225 QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS-LRLQRSWKQDEQP 273 (282)
T ss_pred cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc-chhhcccchhhCC
Confidence 12356899999999999999997 49999999975 5666666655544
No 281
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.94 E-value=1.3e-06 Score=73.33 Aligned_cols=238 Identities=16% Similarity=0.211 Sum_probs=139.5
Q ss_pred CcEEEEEECC-CCCEEEEEecCCe-EEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 33 DIVSAIEFDK-TGDYLAVGDRGGR-VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 33 ~~v~~v~~~~-~~~~la~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
.....++.+| .+..+|.+-.-|+ ..+||..+++.. ..+. . ..-+.|-||.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~-------~~~~---------a---~~gRHFyGHg--------- 56 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLL-------QRLW---------A---PPGRHFYGHG--------- 56 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCcee-------eEEc---------C---CCCCEEecCE---------
Confidence 3456888999 6677788877774 678999887741 0000 0 0113456665
Q ss_pred eeccceEEEEEEecCCCCEEEEEe-----CCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290 111 EIEEKINRVRWCAAPNGSMFILST-----NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (409)
.| |+||++|++.- ..|.|-|||... ...++-+
T Consensus 57 ---------~f--s~dG~~LytTEnd~~~g~G~IgVyd~~~-~~~ri~E------------------------------- 93 (305)
T PF07433_consen 57 ---------VF--SPDGRLLYTTENDYETGRGVIGVYDAAR-GYRRIGE------------------------------- 93 (305)
T ss_pred ---------EE--cCCCCEEEEeccccCCCcEEEEEEECcC-CcEEEeE-------------------------------
Confidence 46 79999999863 347888888872 2322222
Q ss_pred ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecC--------Ce-----------EEEEEc
Q 015290 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADD--------LR-----------INLWNL 246 (409)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d--------~~-----------i~lwd~ 246 (409)
| ..+.-....+.+.|||+.|++++. |. +.+-|.
T Consensus 94 ---------------------------~-~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~ 145 (305)
T PF07433_consen 94 ---------------------------F-PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA 145 (305)
T ss_pred ---------------------------e-cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEec
Confidence 1 233333455778888877777532 22 233333
Q ss_pred cCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCe-------EEEEeCCCccccccccccccccccccCC
Q 015290 247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF-------VRLVDMRQSALCDHSARILRDAAESHGS 319 (409)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 319 (409)
. ++..+....++ -.-|...+..+++.++| ..++..-..|. |-+++.... +..+.. .
T Consensus 146 ~-sG~ll~q~~Lp---~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~------~~~~~~------p 208 (305)
T PF07433_consen 146 R-SGALLEQVELP---PDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA------LRLLPA------P 208 (305)
T ss_pred C-CCceeeeeecC---ccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc------ceeccC------C
Confidence 3 44444432211 13467789999999998 66665544332 333332221 011111 0
Q ss_pred cccccccccceeeeEeccCCCEEEEeec--CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCC
Q 015290 320 KSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL 397 (409)
Q Consensus 320 ~~~~~~~~~~i~~~~~s~~g~~l~sg~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 397 (409)
..........+-+++++++|.++++.+- +.+.+||..+ ++.+....-... ..++-.+++
T Consensus 209 ~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l~D~-----------------cGva~~~~~- 269 (305)
T PF07433_consen 209 EEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-GRLLGSVPLPDA-----------------CGVAPTDDG- 269 (305)
T ss_pred hHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-CCEeeccccCce-----------------eeeeecCCc-
Confidence 0001122467899999999999987763 9999999986 777766543332 356666666
Q ss_pred eEEEcccC
Q 015290 398 HFATGSYR 405 (409)
Q Consensus 398 ~l~s~s~d 405 (409)
+++|.+..
T Consensus 270 f~~ssG~G 277 (305)
T PF07433_consen 270 FLVSSGQG 277 (305)
T ss_pred eEEeCCCc
Confidence 66665543
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=2.7e-09 Score=93.67 Aligned_cols=185 Identities=24% Similarity=0.302 Sum_probs=119.8
Q ss_pred eeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCc
Q 015290 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (409)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (409)
+..+.||+ +.|..++-. .+.+.+++++.|++|++|.++...-..
T Consensus 728 L~nf~GH~------------~~iRai~Ai--dNENSFiSASkDKTVKLWSik~EgD~~---------------------- 771 (1034)
T KOG4190|consen 728 LCNFTGHQ------------EKIRAIAAI--DNENSFISASKDKTVKLWSIKPEGDEI---------------------- 771 (1034)
T ss_pred eecccCcH------------HHhHHHHhc--ccccceeeccCCceEEEEEeccccCcc----------------------
Confidence 45678888 788888763 566689999999999999987431110
Q ss_pred eeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCcee
Q 015290 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCF 253 (409)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~ 253 (409)
.+..|..++ ..|..+|..+.|-.+-+++++ .||.|.+||.- -+..+
T Consensus 772 -------------------------------~tsaCQfTY-~aHkk~i~~igfL~~lr~i~S-cD~giHlWDPF-igr~L 817 (1034)
T KOG4190|consen 772 -------------------------------GTSACQFTY-QAHKKPIHDIGFLADLRSIAS-CDGGIHLWDPF-IGRLL 817 (1034)
T ss_pred -------------------------------ccceeeeEh-hhccCcccceeeeeccceeee-ccCcceeeccc-ccchh
Confidence 002344455 789999999999888776665 46779999987 34443
Q ss_pred e-eeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceee
Q 015290 254 N-IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (409)
Q Consensus 254 ~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 332 (409)
. ..+.+ -.+..+.|.++.- -+.+-+++.++...+|+++|.|..+.. ...++.+. .+..+-+.+
T Consensus 818 aq~~dap---k~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~-~E~kVcna-----------~~Pna~~R~ 881 (1034)
T KOG4190|consen 818 AQMEDAP---KEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWT-CELKVCNA-----------PGPNALTRA 881 (1034)
T ss_pred HhhhcCc---ccCCCceeEeccc-Ccchheeeeccchhhheeeecccccce-eeEEeccC-----------CCCchheeE
Confidence 3 22111 1111223333321 123123444478999999999986531 11122211 111456889
Q ss_pred eEeccCCCEEEEe-ecCeEEEEEccCCCcceEEE
Q 015290 333 IKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATF 365 (409)
Q Consensus 333 ~~~s~~g~~l~sg-~~~~v~iwd~~~~~~~~~~~ 365 (409)
++..+.|+++|++ +.|+|.+.|.++ |+.+..+
T Consensus 882 iaVa~~GN~lAa~LSnGci~~LDaR~-G~vINsw 914 (1034)
T KOG4190|consen 882 IAVADKGNKLAAALSNGCIAILDARN-GKVINSW 914 (1034)
T ss_pred EEeccCcchhhHHhcCCcEEEEecCC-CceeccC
Confidence 9999999999998 559999999986 7665543
No 283
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.93 E-value=7.2e-06 Score=69.36 Aligned_cols=227 Identities=14% Similarity=0.135 Sum_probs=136.7
Q ss_pred EEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccc
Q 015290 37 AIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (409)
Q Consensus 37 ~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (409)
++.|.+ ++.++++--..+.|..|+..++.. ..+.. ..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~----------------------------~~~~~--------------~~ 41 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV----------------------------EVIDL--------------PG 41 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE----------------------------EEEES--------------SS
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE----------------------------EEEec--------------CC
Confidence 568888 777777777889999999887652 11111 23
Q ss_pred eEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccce
Q 015290 116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (409)
Q Consensus 116 v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (409)
...+.+. .++ ..|+.+...+ +.++|+.+++...+.....
T Consensus 42 ~~G~~~~-~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~-------------------------------------- 80 (246)
T PF08450_consen 42 PNGMAFD-RPD-GRLYVADSGG-IAVVDPDTGKVTVLADLPD-------------------------------------- 80 (246)
T ss_dssp EEEEEEE-CTT-SEEEEEETTC-EEEEETTTTEEEEEEEEET--------------------------------------
T ss_pred CceEEEE-ccC-CEEEEEEcCc-eEEEecCCCcEEEEeeccC--------------------------------------
Confidence 6677773 145 4666666655 4555988886655432100
Q ss_pred eEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cC--------CeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD--------LRINLWNLEISDQCFNIVDMKPSNMDDL 266 (409)
Q Consensus 196 i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d--------~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (409)
-.......+.+++.|+|++.++. .. |.|..++.. ++.... ...
T Consensus 81 ------------------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~--------~~~ 132 (246)
T PF08450_consen 81 ------------------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVV--------ADG 132 (246)
T ss_dssp ------------------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEE--------EEE
T ss_pred ------------------CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--CeEEEE--------ecC
Confidence 01134557889999999977764 22 345555544 332222 122
Q ss_pred cCceEEEEEeCCCCCEE-EEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290 267 TEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (409)
Q Consensus 267 ~~~v~~~~~~p~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg 345 (409)
-...+.++|+|++ +.| ++-+..+.|..+++..........+.+.. +..-.+..-.+++..+|++.++.
T Consensus 133 ~~~pNGi~~s~dg-~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~----------~~~~~g~pDG~~vD~~G~l~va~ 201 (246)
T PF08450_consen 133 LGFPNGIAFSPDG-KTLYVADSFNGRIWRFDLDADGGELSNRRVFID----------FPGGPGYPDGLAVDSDGNLWVAD 201 (246)
T ss_dssp ESSEEEEEEETTS-SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-----------SSSSCEEEEEEEBTTS-EEEEE
T ss_pred cccccceEECCcc-hheeecccccceeEEEeccccccceeeeeeEEE----------cCCCCcCCCcceEcCCCCEEEEE
Confidence 3456899999999 655 46677888999998643211111111211 00001247789999999877766
Q ss_pred ec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEc-CCCCeEEEc
Q 015290 346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATG 402 (409)
Q Consensus 346 ~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-pdg~~l~s~ 402 (409)
.. +.|.++|.+ ++.+..+....... ++++|. ++.+.|...
T Consensus 202 ~~~~~I~~~~p~--G~~~~~i~~p~~~~---------------t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 202 WGGGRIVVFDPD--GKLLREIELPVPRP---------------TNCAFGGPDGKTLYVT 243 (246)
T ss_dssp ETTTEEEEEETT--SCEEEEEE-SSSSE---------------EEEEEESTTSSEEEEE
T ss_pred cCCCEEEEECCC--ccEEEEEcCCCCCE---------------EEEEEECCCCCEEEEE
Confidence 54 999999976 88888887663332 699994 676665543
No 284
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.92 E-value=1.2e-08 Score=92.62 Aligned_cols=266 Identities=14% Similarity=0.178 Sum_probs=158.5
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
-.+.+.++..+|.|+-+|.++.-| +.+.|++..-. ..+.+..+..
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~-----------------------ppr~l~h~tp----------- 67 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT-----------------------PPRWLHHITP----------- 67 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCC-----------------------CceeeeccCc-----------
Confidence 357889999999999999999877 55667665332 1111221111
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCc--eeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ--KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (409)
-.|-.+.|.|.+.-.+-++......-.+|++... +.+.+........+..+.+......++ +..
T Consensus 68 ---w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVl-----------atc 133 (1081)
T KOG0309|consen 68 ---WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVL-----------ATC 133 (1081)
T ss_pred ---chhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcce-----------eec
Confidence 2356677765554455555544444557877532 223333333333333333333333222 222
Q ss_pred cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (409)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (409)
.. +..+..||+.... .++..+ ..-......++|+-. +..+++...+.|.+||++....++.. +++|.
T Consensus 134 sv--dt~vh~wd~rSp~--~p~ys~-~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s-------~K~~v 201 (1081)
T KOG0309|consen 134 SV--DTYVHAWDMRSPH--RPFYST-SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCS-------LKGHV 201 (1081)
T ss_pred cc--cccceeeeccCCC--cceeee-ecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEE-------ecccc
Confidence 22 6789999997532 222222 222344567889865 45555557888999999966666666 67788
Q ss_pred CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE---
Q 015290 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS--- 344 (409)
Q Consensus 268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s--- 344 (409)
..|+.++|..--...+.+.+.|++|+.||......... ..... ..+|+...+.|-|+-...
T Consensus 202 s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~--~~vtt--------------~~piw~~r~~Pfg~g~~~mp~ 265 (1081)
T KOG0309|consen 202 SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK--RTVTT--------------NFPIWRGRYLPFGEGYCIMPM 265 (1081)
T ss_pred eeeehHHHhhhhhhhhcccCCCCceeeecccccccccc--eeccc--------------cCcceeccccccCceeEeccc
Confidence 99999999865445788999999999999876432111 11111 346777777776542222
Q ss_pred eecCeEE---------EEEccCCCcceEEEecccCccc
Q 015290 345 RDYMNLK---------LWDIRMDSTPVATFKIHEHLRP 373 (409)
Q Consensus 345 g~~~~v~---------iwd~~~~~~~~~~~~~~~~~~~ 373 (409)
.++..+. .|+.....+++..|.||...+.
T Consensus 266 ~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~ 303 (1081)
T KOG0309|consen 266 VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVL 303 (1081)
T ss_pred cCCeeeeeccccchhhhhccccCCcceeeecCcchHHH
Confidence 1223333 3454444578999999998763
No 285
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.91 E-value=4.3e-08 Score=81.24 Aligned_cols=222 Identities=10% Similarity=0.090 Sum_probs=147.6
Q ss_pred eeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCC-ceeeeeeccCCCccccccccccccc
Q 015290 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEK 171 (409)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (409)
++..++||. +.|++.... |...-+++++.|.++|+|--++ ++.-...
T Consensus 16 ll~~~eG~~------------d~vn~~~l~--~~e~gv~~~s~drtvrv~lkrds~q~wpsI------------------ 63 (404)
T KOG1409|consen 16 LLSKIEGSQ------------DDVNAAILI--PKEEGVISVSEDRTVRVWLKRDSGQYWPSI------------------ 63 (404)
T ss_pred hhhhhcCch------------hhhhhheec--cCCCCeEEccccceeeeEEeccccccCchh------------------
Confidence 456678888 677777663 5666799999999999996443 2221111
Q ss_pred CceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCC
Q 015290 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD 250 (409)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~ 250 (409)
. ..-..+++++.+.++...|+.| .+|++.-+.+...-
T Consensus 64 ---------------------------------------~---~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf 101 (404)
T KOG1409|consen 64 ---------------------------------------Y---HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF 101 (404)
T ss_pred ---------------------------------------h---hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh
Confidence 0 2234567899999999999999 99999888776221
Q ss_pred ceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccc--------------cc----------
Q 015290 251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD--------------HS---------- 306 (409)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~--------------~~---------- 306 (409)
..... +.....|...+..+.|+-.. ..+++.+.|..+.---.+.+.... -.
T Consensus 102 nkm~~----~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gq 176 (404)
T KOG1409|consen 102 NKMTF----LKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQ 176 (404)
T ss_pred hhcch----hhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccc
Confidence 11111 12256788999999998776 788888888765433333321100 00
Q ss_pred cccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCcc
Q 015290 307 ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIF 385 (409)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (409)
+..+..-.........+.+|.+.+.+++|.|..+.|.+|. |..+.+||+--.......+.+|...+
T Consensus 177 vt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV------------- 243 (404)
T KOG1409|consen 177 ITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKV------------- 243 (404)
T ss_pred eEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhh-------------
Confidence 0111111123334556789999999999999999999996 59999999963233455666777765
Q ss_pred ceeeEEEcCCCCeEEEcccCCCC
Q 015290 386 DKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 386 ~v~~~~~spdg~~l~s~s~dg~i 408 (409)
..+..-+--+.|.+++.||.|
T Consensus 244 --~~l~~~~~t~~l~S~~edg~i 264 (404)
T KOG1409|consen 244 --QALSYAQHTRQLISCGEDGGI 264 (404)
T ss_pred --hhhhhhhhheeeeeccCCCeE
Confidence 355556666778888888865
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=6.2e-09 Score=91.47 Aligned_cols=178 Identities=15% Similarity=0.155 Sum_probs=120.6
Q ss_pred cccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (409)
Q Consensus 28 ~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (409)
..+|.++|.+++--.+.+-+++++.|.+|++|.+...... + ....+.-+++.|.
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~------~--------------~tsaCQfTY~aHk------ 784 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE------I--------------GTSACQFTYQAHK------ 784 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc------c--------------ccceeeeEhhhcc------
Confidence 3458899998887777788999999999999998743210 0 0112455678888
Q ss_pred ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeec
Q 015290 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (409)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
.+|.++.|. .+-++++ +.|+-|.+||.--+...........
T Consensus 785 ------k~i~~igfL--~~lr~i~--ScD~giHlWDPFigr~Laq~~dapk----------------------------- 825 (1034)
T KOG4190|consen 785 ------KPIHDIGFL--ADLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPK----------------------------- 825 (1034)
T ss_pred ------Ccccceeee--eccceee--eccCcceeecccccchhHhhhcCcc-----------------------------
Confidence 899999995 5655554 4578899999876654432111000
Q ss_pred ccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (409)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (409)
.+..+.|.|+.- -+...++.| ...+++++|.+ .......+.+. ...+
T Consensus 826 ---------------------------~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaR-sce~~~E~kVc--na~~ 874 (1034)
T KOG4190|consen 826 ---------------------------EGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDAR-SCEWTCELKVC--NAPG 874 (1034)
T ss_pred ---------------------------cCCCceeEeccc-Ccchheeeeccchhhheeeecc-cccceeeEEec--cCCC
Confidence 122333444421 133444444 78899999998 55444433222 1345
Q ss_pred ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccc
Q 015290 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (409)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~ 302 (409)
....+.+++..+.| +.++.+-..|+|.+.|.|+|+.
T Consensus 875 Pna~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~v 910 (1034)
T KOG4190|consen 875 PNALTRAIAVADKG-NKLAAALSNGCIAILDARNGKV 910 (1034)
T ss_pred CchheeEEEeccCc-chhhHHhcCCcEEEEecCCCce
Confidence 56778999999999 9999999999999999999975
No 287
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.86 E-value=7.3e-09 Score=59.48 Aligned_cols=39 Identities=23% Similarity=0.592 Sum_probs=34.7
Q ss_pred eeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEe
Q 015290 14 WKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60 (409)
Q Consensus 14 w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~ 60 (409)
|++.+.+.. |.+.|++|+|+|++.+||+|+.|+.|++||
T Consensus 1 g~~~~~~~~--------h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRG--------HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEES--------SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcC--------CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 556666555 899999999999999999999999999997
No 288
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=4.2e-07 Score=82.70 Aligned_cols=244 Identities=13% Similarity=0.138 Sum_probs=150.0
Q ss_pred cCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (409)
Q Consensus 30 ~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (409)
+|...|.-+.|+...+.|-+...+|.|.+|-+-.+.- ..++......
T Consensus 69 GH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW---------------------------~EEMiNnRnK------ 115 (1189)
T KOG2041|consen 69 GHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSW---------------------------CEEMINNRNK------ 115 (1189)
T ss_pred cCcceEEEEEeccccccccccCCCceEEEEeeecccH---------------------------HHHHhhCcCc------
Confidence 4999999999999999999999999999999876652 1111111111
Q ss_pred ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (409)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (409)
..|.+++| +.+|+.++..-.||.|.+=.++++++--. + ........+.++++...+..+.
T Consensus 116 ----SvV~SmsW--n~dG~kIcIvYeDGavIVGsvdGNRIwgK-e-------------Lkg~~l~hv~ws~D~~~~Lf~~ 175 (1189)
T KOG2041|consen 116 ----SVVVSMSW--NLDGTKICIVYEDGAVIVGSVDGNRIWGK-E-------------LKGQLLAHVLWSEDLEQALFKK 175 (1189)
T ss_pred ----cEEEEEEE--cCCCcEEEEEEccCCEEEEeeccceecch-h-------------cchheccceeecccHHHHHhhh
Confidence 57999999 79999999999999988766654432110 0 0001112334444444433333
Q ss_pred ccccceeEEEecCCcccc----eeeeee---ccccccceeEEEe--------CCCCCeEEEe-cCCeEEEEEccCCCcee
Q 015290 190 WTENMATKIANVGNSVHA----RCQKVY---PHAHDFNINSISN--------NSDCETFVSA-DDLRINLWNLEISDQCF 253 (409)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~----~~~~~~---~~~~~~~v~~l~~--------~~~~~~l~~~-~d~~i~lwd~~~~~~~~ 253 (409)
- +|...++|.+..... .|.... +......|..+.| -|+...|+.+ .+|.+.+-.-.....+.
T Consensus 176 a--nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv 253 (1189)
T KOG2041|consen 176 A--NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV 253 (1189)
T ss_pred c--CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe
Confidence 2 678888888754322 221111 1112223445555 3578899999 99999887665222222
Q ss_pred eeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCC---------eEEEEeCCCccccccccccccccccccCCccccc
Q 015290 254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (409)
Q Consensus 254 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (409)
++ ...-.+..+.|+++| ..|+.++.+. .|.+|..-. . .... ++
T Consensus 254 -v~--------dtgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~G-~----i~gt-------------lk 305 (1189)
T KOG2041|consen 254 -VV--------DTGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPYG-H----IVGT-------------LK 305 (1189)
T ss_pred -EE--------ecccEeecceecCCC-cEEEEccCcccccCccccceEEEeccch-h----heEE-------------Ee
Confidence 21 122568899999999 9999887653 333333211 1 0122 22
Q ss_pred ccccceeeeEeccCCCEEEEeecCeEEEEEcc
Q 015290 325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIR 356 (409)
Q Consensus 325 ~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~ 356 (409)
-....|++++|-..|-.+|.+-|+.|++=+++
T Consensus 306 vpg~~It~lsWEg~gLriA~AvdsfiyfanIR 337 (1189)
T KOG2041|consen 306 VPGSCITGLSWEGTGLRIAIAVDSFIYFANIR 337 (1189)
T ss_pred cCCceeeeeEEcCCceEEEEEecceEEEEeec
Confidence 22467888888887777777766777666655
No 289
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.84 E-value=7.8e-08 Score=76.72 Aligned_cols=73 Identities=16% Similarity=0.227 Sum_probs=60.1
Q ss_pred ceeEEEeCCCCCe-EEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeC
Q 015290 220 NINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (409)
Q Consensus 220 ~v~~l~~~~~~~~-l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~ 297 (409)
.|.+++-+|..+. +++| .||.+-+||.+....+... +..|+..++.+-|+|..+..|++++.||.+..||.
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~-------l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda 253 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL-------LKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA 253 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH-------HHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence 4889999997655 4567 9999999999933222222 78899999999999998899999999999999998
Q ss_pred CC
Q 015290 298 RQ 299 (409)
Q Consensus 298 ~~ 299 (409)
.+
T Consensus 254 s~ 255 (319)
T KOG4714|consen 254 ST 255 (319)
T ss_pred CC
Confidence 75
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.84 E-value=6.6e-07 Score=71.89 Aligned_cols=168 Identities=14% Similarity=0.067 Sum_probs=108.1
Q ss_pred eEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccce
Q 015290 116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (409)
Q Consensus 116 v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (409)
+.++++ +++++.+++.+....|-.|.+........
T Consensus 161 ~ns~~~--snd~~~~~~Vgds~~Vf~y~id~~sey~~------------------------------------------- 195 (344)
T KOG4532|consen 161 QNSLHY--SNDPSWGSSVGDSRRVFRYAIDDESEYIE------------------------------------------- 195 (344)
T ss_pred eeeeEE--cCCCceEEEecCCCcceEEEeCCccceee-------------------------------------------
Confidence 677788 78998998888888888888865432111
Q ss_pred eEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEE
Q 015290 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 274 (409)
Q Consensus 196 i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 274 (409)
++ +.....+.-.+..|+.....+|++ +||++.|||++..+.+..... .+-+.|.+.+..+.
T Consensus 196 -~~--------------~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s---strp~hnGa~R~c~ 257 (344)
T KOG4532|consen 196 -NI--------------YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS---STRPHHNGAFRVCR 257 (344)
T ss_pred -ee--------------EecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc---ccCCCCCCceEEEE
Confidence 00 001222223577899999999999 999999999995554443321 12355899999999
Q ss_pred EeCCCC-CEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccc-cceeeeEeccCCCEEEEeecCeEEE
Q 015290 275 FHPIYC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSRDYMNLKL 352 (409)
Q Consensus 275 ~~p~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~sg~~~~v~i 352 (409)
|++.|+ .+|...-.-+.+.+.|+|++.-+.. +.+.+. .+..|. ..|..-.|+.++.-+.+.++-.+.=
T Consensus 258 Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~-I~i~~d---------~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae 327 (344)
T KOG4532|consen 258 FSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV-IVIPDD---------VERKHNTQHIFGTNFNNENESNDVKNELQGAE 327 (344)
T ss_pred ecCCCcceEEEEecCcceEEEEEcccCceeeE-EecCcc---------ccccccccccccccccCCCcccccccchhhhe
Confidence 998764 2455555567899999999764321 111111 011222 3477778888777666665545555
Q ss_pred EEcc
Q 015290 353 WDIR 356 (409)
Q Consensus 353 wd~~ 356 (409)
|++.
T Consensus 328 ~ni~ 331 (344)
T KOG4532|consen 328 YNIL 331 (344)
T ss_pred eecc
Confidence 6654
No 291
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.83 E-value=6.9e-09 Score=96.10 Aligned_cols=199 Identities=15% Similarity=0.259 Sum_probs=131.5
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
|....+|++|+-+.++|++|+-.|.|+++++.++.. .....+|.
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~---------------------------e~s~ncH~--------- 1143 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM---------------------------EESVNCHQ--------- 1143 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCccc---------------------------cccccccc---------
Confidence 678899999999999999999999999999998874 24467777
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCC--eEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (409)
.+|+-+.= +.+|..+++.+.-. -..+|++..-
T Consensus 1144 ---SavT~veP--s~dgs~~Ltsss~S~PlsaLW~~~s~----------------------------------------- 1177 (1516)
T KOG1832|consen 1144 ---SAVTLVEP--SVDGSTQLTSSSSSSPLSALWDASST----------------------------------------- 1177 (1516)
T ss_pred ---cccccccc--cCCcceeeeeccccCchHHHhccccc-----------------------------------------
Confidence 78888875 78888777654322 4567877541
Q ss_pred cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (409)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (409)
..+...| . .-.++.|+...+.-+.| ......+||++ +...+.++-.. ..+..
T Consensus 1178 ------------------~~~~Hsf-~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvq-T~~~l~tylt~---~~~~~ 1230 (1516)
T KOG1832|consen 1178 ------------------GGPRHSF-D----EDKAVKFSNSLQFRALGTEADDALLYDVQ-TCSPLQTYLTD---TVTSS 1230 (1516)
T ss_pred ------------------cCccccc-c----ccceeehhhhHHHHHhcccccceEEEecc-cCcHHHHhcCc---chhhh
Confidence 1222222 1 22467887765555666 66678899999 44443331000 11112
Q ss_pred CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec
Q 015290 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (409)
Q Consensus 268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~ 347 (409)
..-+.+.|+|+. .+++ .|| .+||+|..+- ++.|.. -..-..-.|+|.|.-++.-+
T Consensus 1231 y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~~a----Ih~FD~--------------ft~~~~G~FHP~g~eVIINS- 1285 (1516)
T KOG1832|consen 1231 YSNNLAHFSPCD-TLIL---NDG--VLWDVRIPEA----IHRFDQ--------------FTDYGGGGFHPSGNEVIINS- 1285 (1516)
T ss_pred hhccccccCCCc-ceEe---eCc--eeeeeccHHH----Hhhhhh--------------heecccccccCCCceEEeec-
Confidence 223678899997 6665 566 4899998643 344443 11223457999998887766
Q ss_pred CeEEEEEccCCCcceEEEec
Q 015290 348 MNLKLWDIRMDSTPVATFKI 367 (409)
Q Consensus 348 ~~v~iwd~~~~~~~~~~~~~ 367 (409)
.|||+++ -+.++....
T Consensus 1286 ---EIwD~RT-F~lLh~VP~ 1301 (1516)
T KOG1832|consen 1286 ---EIWDMRT-FKLLHSVPS 1301 (1516)
T ss_pred ---hhhhhHH-HHHHhcCcc
Confidence 6899987 566655443
No 292
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.82 E-value=1.4e-07 Score=79.84 Aligned_cols=116 Identities=18% Similarity=0.243 Sum_probs=79.7
Q ss_pred EEEeCCCCCeEEEe----cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCC
Q 015290 223 SISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (409)
Q Consensus 223 ~l~~~~~~~~l~~~----~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~ 298 (409)
++.+..+......+ +...+.+|... .+.+. .+-+|-+.++.++|+||+ +.++++..|..|++-...
T Consensus 112 ai~~~~~~~sv~v~dkagD~~~~di~s~~-~~~~~--------~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~yp 181 (390)
T KOG3914|consen 112 AISFIREDTSVLVADKAGDVYSFDILSAD-SGRCE--------PILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYP 181 (390)
T ss_pred eeeeeeccceEEEEeecCCceeeeeeccc-ccCcc--------hhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecC
Confidence 44444444444333 45556666655 22222 257899999999999999 999999999999987654
Q ss_pred CccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe-ecCeEEEEEccCCCcceEEEe
Q 015290 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFK 366 (409)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg-~~~~v~iwd~~~~~~~~~~~~ 366 (409)
..-. + .+.+-||..-|..++.-++. .|++| +|++|++||+.+ ++.+.++.
T Consensus 182 a~f~----I------------esfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~s-gk~L~t~d 232 (390)
T KOG3914|consen 182 ATFV----I------------ESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITS-GKLLDTCD 232 (390)
T ss_pred cccc----h------------hhhccccHhheeeeeeccCc-eeeecCCCCcEEEEeccc-CCcccccc
Confidence 4211 1 12234678899999998764 45665 579999999987 77776654
No 293
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.78 E-value=3.3e-08 Score=98.22 Aligned_cols=163 Identities=17% Similarity=0.199 Sum_probs=120.7
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (409)
..|.++.-| |...+.+||+.||.|++|....++...
T Consensus 2209 ~~v~r~~sH--p~~~~Yltgs~dgsv~~~~w~~~~~v~------------------------------------------ 2244 (2439)
T KOG1064|consen 2209 ENVRRMTSH--PSDPYYLTGSQDGSVRMFEWGHGQQVV------------------------------------------ 2244 (2439)
T ss_pred CceeeecCC--CCCceEEecCCCceEEEEeccCCCeEE------------------------------------------
Confidence 567777774 667789999999999999987664432
Q ss_pred ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEE
Q 015290 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (409)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (409)
.|+. .+. ..|+.+.|+.+|+.+..+ .||.+.+|... . +.+.. ...|......
T Consensus 2245 ----~~rt-------------~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p-k~~~s-------~qchnk~~~D 2297 (2439)
T KOG1064|consen 2245 ----CFRT-------------AGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P-KPYTS-------WQCHNKALSD 2297 (2439)
T ss_pred ----Eeec-------------cCc-chhhhhhhcccCCceeeeccCCceeecccC-C-cceec-------cccCCccccc
Confidence 2221 233 778899999999999999 99999999987 3 33322 5778888888
Q ss_pred EEEeCCCCCEEEEEe---CCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-C
Q 015290 273 AEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 348 (409)
Q Consensus 273 ~~~~p~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~ 348 (409)
+.|-. ..+++++ .++.+.+||..-... ..-.| ..|.+.++++++-|..++|++|+. |
T Consensus 2298 f~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~------~s~v~----------~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2298 FRFIG---SLLATAGRSSDNRNVCLWDTLLPPM------NSLVH----------TCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred eeeee---hhhhccccCCCCCcccchhcccCcc------cceee----------eecCCCceEEEEcCcceEEEecCCcC
Confidence 88875 4566654 467899999654211 11110 346788999999999999999986 9
Q ss_pred eEEEEEccCCCcceEEEec
Q 015290 349 NLKLWDIRMDSTPVATFKI 367 (409)
Q Consensus 349 ~v~iwd~~~~~~~~~~~~~ 367 (409)
.|++||++. .+..+.++.
T Consensus 2359 ~v~l~D~rq-rql~h~~~~ 2376 (2439)
T KOG1064|consen 2359 EVCLFDIRQ-RQLRHTFQA 2376 (2439)
T ss_pred cEEEeehHH-HHHHHHhhh
Confidence 999999985 666655543
No 294
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.78 E-value=5e-06 Score=67.87 Aligned_cols=36 Identities=22% Similarity=0.169 Sum_probs=31.8
Q ss_pred ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccc
Q 015290 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (409)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~ 302 (409)
....|..+..+||| +.||+...+|.|.+|++.+-++
T Consensus 228 ~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 228 EQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred CCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcchh
Confidence 35679999999999 9999999999999999987543
No 295
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.73 E-value=7.2e-08 Score=55.24 Aligned_cols=38 Identities=29% Similarity=0.799 Sum_probs=34.9
Q ss_pred eeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEE
Q 015290 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWK 143 (409)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd 143 (409)
+++..+.+|. +.|++|+| +|++.+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~------------~~i~~i~~--~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHS------------SSINSIAW--SPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSS------------SSEEEEEE--ETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCC------------CcEEEEEE--ecccccceeeCCCCEEEEEC
Confidence 4678899999 89999999 68899999999999999997
No 296
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=8.9e-06 Score=75.94 Aligned_cols=132 Identities=13% Similarity=0.086 Sum_probs=87.0
Q ss_pred cccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEE
Q 015290 217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (409)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iw 295 (409)
...++.+++++.+-+.+|+| .+|.|..+.-+..+...... .-.....++|+.+.+..++ +.++....-..|.+|
T Consensus 124 ~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~----~~~~~~~~pITgL~~~~d~-~s~lFv~Tt~~V~~y 198 (933)
T KOG2114|consen 124 NPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ----DYSHRGKEPITGLALRSDG-KSVLFVATTEQVMLY 198 (933)
T ss_pred CCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce----eeeccCCCCceeeEEecCC-ceeEEEEecceeEEE
Confidence 46678899999999999999 99999988643211111110 1123456789999999998 553333344568999
Q ss_pred eCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEe-cccC
Q 015290 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK-IHEH 370 (409)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~-~~~~ 370 (409)
.+.+..+. .+.. ..|..+++|.++++....+++++...|.+||..- .++...+. ++..
T Consensus 199 ~l~gr~p~---~~~l-------------d~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~-~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 199 SLSGRTPS---LKVL-------------DNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDG-RGPCFAFEVGEKK 257 (933)
T ss_pred EecCCCcc---eeee-------------ccCCccceeeecCCCCccEEEecCceEEEEcCCC-cceeeeecCCCeE
Confidence 88743210 1222 2335688999998866546666668999999873 55556666 5554
No 297
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.71 E-value=7.8e-06 Score=68.80 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=74.6
Q ss_pred ccccceeEEEeCCCCCeEEEe-cCCe-------EEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEE-EEE
Q 015290 216 AHDFNINSISNNSDCETFVSA-DDLR-------INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-AYS 286 (409)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~-~d~~-------i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~ 286 (409)
-|+..|..|++.++|..++.. ..|. +-+++. +..+..+............++-+|++++++ .++ +|+
T Consensus 160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~---g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g-~~ia~ts 235 (305)
T PF07433_consen 160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR---GGALRLLPAPEEQWRRLNGYIGSIAADRDG-RLIAVTS 235 (305)
T ss_pred ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC---CCcceeccCChHHHHhhCCceEEEEEeCCC-CEEEEEC
Confidence 467789999999999777665 4332 333433 333444444433344566889999999998 655 555
Q ss_pred eCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEE
Q 015290 287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD 354 (409)
Q Consensus 287 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd 354 (409)
-..+.+.+||..+++.. ..... ..+..++-.+++ ++++.+.|.+...+
T Consensus 236 PrGg~~~~~d~~tg~~~----~~~~l---------------~D~cGva~~~~~-f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 236 PRGGRVAVWDAATGRLL----GSVPL---------------PDACGVAPTDDG-FLVSSGQGQLIRLS 283 (305)
T ss_pred CCCCEEEEEECCCCCEe----ecccc---------------CceeeeeecCCc-eEEeCCCccEEEcc
Confidence 57889999999998752 22222 356777777776 77766656544333
No 298
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=6.8e-08 Score=80.14 Aligned_cols=133 Identities=12% Similarity=0.145 Sum_probs=93.9
Q ss_pred cccceeEEEeCCCCCeEEEe-cCCeEEEEEccCC----CceeeeeecCCCcCcCccCceEEEEEeC-CCCCEEEEEeCCC
Q 015290 217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEIS----DQCFNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSRG 290 (409)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~s~dg 290 (409)
..+.|.++.|...++.+..| .+|.|..+|++.. +.+... --|.+.|+++..-. ++ ++|++.+.+|
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r--------lyh~Ssvtslq~Lq~s~-q~LmaS~M~g 321 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR--------LYHDSSVTSLQILQFSQ-QKLMASDMTG 321 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE--------EEcCcchhhhhhhcccc-ceEeeccCcC
Confidence 45678888999889999999 9999999999844 223322 23788899988776 55 8899999999
Q ss_pred eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEeccc
Q 015290 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHE 369 (409)
Q Consensus 291 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~ 369 (409)
.|++||.|.-+ +...+..+++|-.. ..-.-+-..+....+++++ |...|||.++. +.++.+++...
T Consensus 322 kikLyD~R~~K-~~~~V~qYeGHvN~-----------~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~-ghLl~tipf~~ 388 (425)
T KOG2695|consen 322 KIKLYDLRATK-CKKSVMQYEGHVNL-----------SAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS-GHLLCTIPFPY 388 (425)
T ss_pred ceeEeeehhhh-cccceeeeeccccc-----------ccccccccccccceEEEccCeeEEEEEeccc-CceeeccCCCC
Confidence 99999998755 33334455553111 1112233455556666665 59999999985 88888887655
Q ss_pred Cc
Q 015290 370 HL 371 (409)
Q Consensus 370 ~~ 371 (409)
..
T Consensus 389 s~ 390 (425)
T KOG2695|consen 389 SA 390 (425)
T ss_pred cc
Confidence 44
No 299
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=1.1e-06 Score=81.18 Aligned_cols=194 Identities=16% Similarity=0.196 Sum_probs=128.8
Q ss_pred ccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccc
Q 015290 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (409)
Q Consensus 27 ~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (409)
..+...+.++|++++ +++||-|..+|.|.+++.+... .....|+
T Consensus 34 ~~~~~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-----------------------------~~~~~~s----- 77 (846)
T KOG2066|consen 34 KNFLQNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-----------------------------KTNFDHS----- 77 (846)
T ss_pred HHHHhhhHHHHHHhh--cceeeeccccceEEEEecCCcc-----------------------------ccccccc-----
Confidence 334457889999998 7899999999999999987542 1223343
Q ss_pred cccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceee
Q 015290 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (409)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (409)
.. ..+|.++++|+.||+|.|--+.+.+.....
T Consensus 78 -------~~--------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~--------------------------------- 109 (846)
T KOG2066|consen 78 -------SS--------ILEGEYVASCSDDGKVVIGSLFTDDEITQY--------------------------------- 109 (846)
T ss_pred -------cc--------ccCCceEEEecCCCcEEEeeccCCccceeE---------------------------------
Confidence 11 368999999999999999877665443321
Q ss_pred cccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-----CCeEEEe-cCCeEEEEEccCCCceeeeeecCC
Q 015290 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-----CETFVSA-DDLRINLWNLEISDQCFNIVDMKP 260 (409)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-----~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~ 260 (409)
.-..++.+++++|+ .+.+++| ..| +.++.-+.-+....+.
T Consensus 110 -----------------------------df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~---- 155 (846)
T KOG2066|consen 110 -----------------------------DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVV---- 155 (846)
T ss_pred -----------------------------ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcccee----
Confidence 23457889999997 5678887 666 7777655323322221
Q ss_pred CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC
Q 015290 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (409)
Q Consensus 261 ~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 340 (409)
+..-.++|.++.|. | +++|-++.+| |++||+..++.. ..... + .+.++. ......+.|.++.
T Consensus 156 --l~~~eG~I~~i~W~--g-~lIAWand~G-v~vyd~~~~~~l----~~i~~-p-~~~~R~-----e~fpphl~W~~~~- 217 (846)
T KOG2066|consen 156 --LSEGEGPIHSIKWR--G-NLIAWANDDG-VKVYDTPTRQRL----TNIPP-P-SQSVRP-----ELFPPHLHWQDED- 217 (846)
T ss_pred --eecCccceEEEEec--C-cEEEEecCCC-cEEEecccccee----eccCC-C-CCCCCc-----ccCCCceEecCCC-
Confidence 45567899999998 5 7898888888 899999886532 11111 0 011110 1223457888765
Q ss_pred EEEEeecCeEEEEEcc
Q 015290 341 HLLSRDYMNLKLWDIR 356 (409)
Q Consensus 341 ~l~sg~~~~v~iwd~~ 356 (409)
.|+.|-..+|+|..++
T Consensus 218 ~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 218 RLVIGWGDSVKICSIK 233 (846)
T ss_pred eEEEecCCeEEEEEEe
Confidence 4555544677777776
No 300
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.63 E-value=2.5e-07 Score=84.38 Aligned_cols=219 Identities=15% Similarity=0.158 Sum_probs=137.1
Q ss_pred CCccccCCCcEEEEEECCC-CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcc
Q 015290 25 PDEELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (409)
Q Consensus 25 ~~~~~~h~~~v~~v~~~~~-~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 103 (409)
.....+|...|+.+.|+|. ...+|+++.|-.+..||+..... ++..+..-.
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--------------------------p~ys~~~w~-- 158 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--------------------------PFYSTSSWR-- 158 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--------------------------ceeeeeccc--
Confidence 3445568999999999994 46899999999999999886542 233222222
Q ss_pred ccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCc
Q 015290 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (409)
Q Consensus 104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (409)
.....|+|. .....+++.+..+.|.+||.+.+..
T Consensus 159 ----------s~asqVkwn--yk~p~vlasshg~~i~vwd~r~gs~---------------------------------- 192 (1081)
T KOG0309|consen 159 ----------SAASQVKWN--YKDPNVLASSHGNDIFVWDLRKGST---------------------------------- 192 (1081)
T ss_pred ----------ccCceeeec--ccCcchhhhccCCceEEEeccCCCc----------------------------------
Confidence 467788994 4434455556667899999986522
Q ss_pred eeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCceeeeeecCCC
Q 015290 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (409)
Q Consensus 184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~ 261 (409)
+..| . ++|-..|+.++|+.- -..+.+. .|++|+.||.......-..
T Consensus 193 ------------pl~s-------------~-K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~------ 240 (1081)
T KOG0309|consen 193 ------------PLCS-------------L-KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR------ 240 (1081)
T ss_pred ------------ceEE-------------e-cccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce------
Confidence 1111 1 567778888888764 2345556 9999999998733221111
Q ss_pred cCcCccCceEEEEEeCCCCCEEEEE-eCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC
Q 015290 262 NMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (409)
Q Consensus 262 ~~~~~~~~v~~~~~~p~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 340 (409)
......+|.--.+.|-|+-+.+-- -.+..+.+++.++.. ..+.. ...+.+...|.||...|....|-..+.
T Consensus 241 -~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d------~e~n~-~~~~~pVh~F~GH~D~V~eFlWR~r~e 312 (1081)
T KOG0309|consen 241 -TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSD------LEWNV-FDLNTPVHTFVGHDDVVLEFLWRKRKE 312 (1081)
T ss_pred -eccccCcceeccccccCceeEeccccCCeeeeeccccchh------hhhcc-ccCCcceeeecCcchHHHHHhhhhccc
Confidence 122345677777778763232222 223355666655432 22333 334455667888888887766654322
Q ss_pred ----------EEEEee-cCeEEEEEccC
Q 015290 341 ----------HLLSRD-YMNLKLWDIRM 357 (409)
Q Consensus 341 ----------~l~sg~-~~~v~iwd~~~ 357 (409)
.|++-+ |..+++|-+..
T Consensus 313 ~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 313 CDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccCCCCccceeEEEeecCCceEeeeccH
Confidence 467766 59999998753
No 301
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.62 E-value=8.7e-06 Score=75.11 Aligned_cols=251 Identities=15% Similarity=0.159 Sum_probs=153.9
Q ss_pred CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (409)
...-.++.|+|.| +||.|+. ..|.+-|..+.+ .+..+.-|.
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q---------------------------~iqsie~h~---------- 55 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQ---------------------------LIQSIELHQ---------- 55 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhh---------------------------hhhccccCc----------
Confidence 3446789999987 7888875 478888877554 466777888
Q ss_pred eccceEEEEEEecC--------C--CCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCC
Q 015290 112 IEEKINRVRWCAAP--------N--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (409)
Q Consensus 112 ~~~~v~~l~~~~s~--------~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (409)
..|+.+.|.|.| . .-.|+++...|.|.+||...+..+..
T Consensus 56 --s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~----------------------------- 104 (1062)
T KOG1912|consen 56 --SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW----------------------------- 104 (1062)
T ss_pred --cceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh-----------------------------
Confidence 899999998622 1 12456677789999999876543322
Q ss_pred CceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCC---CC-CeEEEe-cCCeEEEEEccCCCceeeee
Q 015290 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DC-ETFVSA-DDLRINLWNLEISDQCFNIV 256 (409)
Q Consensus 182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~ 256 (409)
+..+.+++..+.|-+ +. ..|+.- ....+.+|+.. +++.+..
T Consensus 105 --------------------------------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd-tG~k~Wk- 150 (1062)
T KOG1912|consen 105 --------------------------------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD-TGEKFWK- 150 (1062)
T ss_pred --------------------------------hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc-CCceeec-
Confidence 145666777777754 34 344444 78899999998 6665544
Q ss_pred ecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccc---ccccc---------CCccccc
Q 015290 257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD---AAESH---------GSKSFFT 324 (409)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~---------~~~~~~~ 324 (409)
.........++.++|-.++.|..-+..|.+.+-+.-..+......+.+.. |.+.+ ...+.-.
T Consensus 151 ------~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~ 224 (1062)
T KOG1912|consen 151 ------YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTP 224 (1062)
T ss_pred ------cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCC
Confidence 23334556779999987677777778888877765543333222222222 11100 0000000
Q ss_pred cc---ccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCC--e
Q 015290 325 EI---IASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL--H 398 (409)
Q Consensus 325 ~~---~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~--~ 398 (409)
.. ......++|+|.-+.++-.. ...+.++|++- ..++.+..-..+... -+.|-|+++ .
T Consensus 225 ~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~-~~~l~vvpier~~ak---------------fv~vlP~~~rd~ 288 (1062)
T KOG1912|consen 225 ASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGAK---------------FVDVLPDPRRDA 288 (1062)
T ss_pred cchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh-hceeEEEEeccCCcc---------------eeEeccCCCcce
Confidence 00 01123467888765444443 48899999985 677766654443221 366666654 5
Q ss_pred EEEcccCCCC
Q 015290 399 FATGSYRRDN 408 (409)
Q Consensus 399 l~s~s~dg~i 408 (409)
|.+.-.||.+
T Consensus 289 LfclH~nG~l 298 (1062)
T KOG1912|consen 289 LFCLHSNGRL 298 (1062)
T ss_pred EEEEecCCeE
Confidence 7777777654
No 302
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.60 E-value=1.1e-06 Score=72.10 Aligned_cols=245 Identities=15% Similarity=0.186 Sum_probs=130.7
Q ss_pred CCcEEEEEECCCC--CEEEEEecCCeEEEEeccCCcCCCCccc---------------hhhhhhhcccccccCCCceeee
Q 015290 32 VDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHI---------------SRSELEKQMDFTSTSHPEYRYK 94 (409)
Q Consensus 32 ~~~v~~v~~~~~~--~~la~~~~dg~i~iw~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~ 94 (409)
..+|..+.|..++ ..++..+.|.+|++|.+.......+... ..+++..++.. -.++.+
T Consensus 85 eEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls-----~hd~ii 159 (460)
T COG5170 85 EEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLS-----EHDEII 159 (460)
T ss_pred HHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhccccc-----ccceEE
Confidence 5689999998754 3455666899999999876532211100 11111111110 011111
Q ss_pred ee------ecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccc
Q 015290 95 TE------FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 168 (409)
Q Consensus 95 ~~------~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (409)
.. -..|. --|.++.| +.|.+.++++ .|=.|.+|++.-.
T Consensus 160 aa~p~rvyaNaH~------------yhiNSiS~--NsD~et~lSa-DdLrINLWnl~i~--------------------- 203 (460)
T COG5170 160 AAKPCRVYANAHP------------YHINSISF--NSDKETLLSA-DDLRINLWNLEII--------------------- 203 (460)
T ss_pred Eeccceeccccce------------eEeeeeee--cCchheeeec-cceeeeecccccc---------------------
Confidence 11 13344 67899999 5666555554 5677999987632
Q ss_pred cccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEEe-cCCeEEEEEc
Q 015290 169 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNL 246 (409)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~lwd~ 246 (409)
|+...+-|+.... ......-|++..|+|.. ..+..+ ..|.|++-|+
T Consensus 204 ------------------------D~sFnIVDiKP~n--------meeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~Dl 251 (460)
T COG5170 204 ------------------------DGSFNIVDIKPHN--------MEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDL 251 (460)
T ss_pred ------------------------CCceEEEeccCcc--------HHHHHHHHhhcccCHhHcceEEEecCCCcEEehhh
Confidence 2333333332100 01223457788899874 333344 8999999999
Q ss_pred cCCCceeee---ee--cCC---CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccC
Q 015290 247 EISDQCFNI---VD--MKP---SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG 318 (409)
Q Consensus 247 ~~~~~~~~~---~~--~~~---~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 318 (409)
+...-+... +. +.+ .-+.+-...|..+.|+++| +++++-+. -++++||.+..+.+.. +...|.....
T Consensus 252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRdy-ltvkiwDvnm~k~pik---Ti~~h~~l~~ 326 (460)
T COG5170 252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRDY-LTVKIWDVNMAKNPIK---TIPMHCDLMD 326 (460)
T ss_pred hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEecc-ceEEEEecccccCCce---eechHHHHHH
Confidence 843222111 00 000 0122234568889999999 88886543 5799999998665433 2222111000
Q ss_pred Cc-cccc-ccccceeeeEeccCCCEEEEeec-CeEEEEE
Q 015290 319 SK-SFFT-EIIASISDIKFANDGQHLLSRDY-MNLKLWD 354 (409)
Q Consensus 319 ~~-~~~~-~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd 354 (409)
.. ..+. +-.-.-..+.||.|.+.+.+|+. +..-+|-
T Consensus 327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred HHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 00 0000 00011234678877777777765 5555554
No 303
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.55 E-value=1.3e-05 Score=74.12 Aligned_cols=85 Identities=15% Similarity=0.284 Sum_probs=63.8
Q ss_pred CCCcEEEEEECCCC------------CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeec
Q 015290 31 DVDIVSAIEFDKTG------------DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ 98 (409)
Q Consensus 31 h~~~v~~v~~~~~~------------~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (409)
|...|+.+.|.|-. -+||++...|.|.+||+..+.. +..+.
T Consensus 54 h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~---------------------------~~~l~ 106 (1062)
T KOG1912|consen 54 HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV---------------------------INWLS 106 (1062)
T ss_pred CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh---------------------------hhhhc
Confidence 78999999999831 2578888999999999987653 33456
Q ss_pred CCCccccccccceeccceEEEEEEecCC-C-CEEEEEeCCCeEEEEEcCCceeeeeec
Q 015290 99 SHEPEFDYLKSLEIEEKINRVRWCAAPN-G-SMFILSTNDKTIKLWKVRDQKVKKIKE 154 (409)
Q Consensus 99 ~h~~~~~~~~~~~~~~~v~~l~~~~s~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~ 154 (409)
.|. .+|..++|.|..+ + ..|++-....++.+|+..+|+......
T Consensus 107 ~~~------------~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 107 HSN------------DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred CCC------------cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence 666 7899999988443 3 345555677899999999887665443
No 304
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.49 E-value=4.7e-07 Score=75.30 Aligned_cols=148 Identities=18% Similarity=0.228 Sum_probs=97.6
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
.+..|.++.|...+.++..|..+|.|..+|+..... |.. .+...+
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq--------------------------------G~~---~~a~rl 295 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ--------------------------------GNG---WCAQRL 295 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc--------------------------------CCC---cceEEE
Confidence 456788999998889999999999999999876532 111 112233
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
-|+..|+++... ..++++|++++.+|+|++||++--+...
T Consensus 296 yh~Ssvtslq~L-q~s~q~LmaS~M~gkikLyD~R~~K~~~--------------------------------------- 335 (425)
T KOG2695|consen 296 YHDSSVTSLQIL-QFSQQKLMASDMTGKIKLYDLRATKCKK--------------------------------------- 335 (425)
T ss_pred EcCcchhhhhhh-ccccceEeeccCcCceeEeeehhhhccc---------------------------------------
Confidence 344789998875 3478899999999999999997554421
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeE--EEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINS--ISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~--l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (409)
.++.+ .+|-..-.- +.+++....++++ +|...+||.++ .+..+.++..+ .....
T Consensus 336 ------------------~V~qY-eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~-~ghLl~tipf~---~s~~e 392 (425)
T KOG2695|consen 336 ------------------SVMQY-EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD-SGHLLCTIPFP---YSASE 392 (425)
T ss_pred ------------------ceeee-ecccccccccccccccccceEEEccCeeEEEEEecc-cCceeeccCCC---Ccccc
Confidence 12222 344322222 2345556667777 99999999999 78877775333 22222
Q ss_pred CceEEEEEe
Q 015290 268 EVITSAEFH 276 (409)
Q Consensus 268 ~~v~~~~~~ 276 (409)
..+.+++|.
T Consensus 393 ~d~~sv~~~ 401 (425)
T KOG2695|consen 393 VDIPSVAFD 401 (425)
T ss_pred ccccceehh
Confidence 334555554
No 305
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.48 E-value=0.00014 Score=70.90 Aligned_cols=241 Identities=15% Similarity=0.128 Sum_probs=135.6
Q ss_pred CcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccccee
Q 015290 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (409)
Q Consensus 33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (409)
+.|.++.|..+...++.+..+|.|.+-|.++... .+-|..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-----------------------------eivg~v----------- 108 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-----------------------------EIVGNV----------- 108 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccce-----------------------------eeeeec-----------
Confidence 6899999999999999999999999998876652 122221
Q ss_pred ccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCC-CCceeeccccc
Q 015290 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFAHGYHLEWT 191 (409)
Q Consensus 113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 191 (409)
+..|.+++| |||.+.++..+..+++.+..- +-.......... -....+..+...|-. ..++-...+.
T Consensus 109 d~GI~aasw--S~Dee~l~liT~~~tll~mT~-~f~~i~E~~L~~--------d~~~~sk~v~VGwGrkeTqfrgs~gr- 176 (1265)
T KOG1920|consen 109 DNGISAASW--SPDEELLALITGRQTLLFMTK-DFEPIAEKPLDA--------DDERKSKFVNVGWGRKETQFRGSEGR- 176 (1265)
T ss_pred cCceEEEee--cCCCcEEEEEeCCcEEEEEec-cccchhcccccc--------ccccccccceecccccceeeecchhh-
Confidence 178999999 899999999999888866432 111111111000 011112222222211 1111111110
Q ss_pred ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEE-----ecC-CeEEEEEccCCCceeeeeecCCCcCcC
Q 015290 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-----ADD-LRINLWNLEISDQCFNIVDMKPSNMDD 265 (409)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-----~~d-~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (409)
....+..... +.... ....+.=+++.|--||+++++ ..+ ..|++||.+ +..-.+ -..
T Consensus 177 ----~~~~~~~~~e--k~~~~--~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE--g~Lns~-------se~ 239 (1265)
T KOG1920|consen 177 ----QAARQKIEKE--KALEQ--IEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE--GALNST-------SEP 239 (1265)
T ss_pred ----hccccccccc--ccccc--hhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc--chhhcc-------cCc
Confidence 0000000000 00000 001122356899999999997 234 799999977 332221 111
Q ss_pred ccCceEEEEEeCCCCCEEEEEe---CCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEE
Q 015290 266 LTEVITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (409)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 342 (409)
-.+.-.+++|-|.| .++++-. .|+.|.+|.-..-. .....-.+.. ....+..++|+.++..|
T Consensus 240 ~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~-hg~f~l~~p~-------------de~~ve~L~Wns~sdiL 304 (1265)
T KOG1920|consen 240 VEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLR-HGEFVLPFPL-------------DEKEVEELAWNSNSDIL 304 (1265)
T ss_pred ccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCcc-ccccccCCcc-------------cccchheeeecCCCCce
Confidence 22333589999999 8888753 45678899754321 1100001111 12348999999999999
Q ss_pred EEe---ec-CeEEEEEccC
Q 015290 343 LSR---DY-MNLKLWDIRM 357 (409)
Q Consensus 343 ~sg---~~-~~v~iwd~~~ 357 (409)
|+- .. ..|++|-+..
T Consensus 305 Av~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 305 AVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred eeeecccccceEEEEEecC
Confidence 973 23 4599998753
No 306
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.47 E-value=8.7e-07 Score=70.89 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=64.7
Q ss_pred CCcEEEEEECC-CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 32 VDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 32 ~~~v~~v~~~~-~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
.+.|++++-+| ...++++|+.||.+-+||...... +...++.|+
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~--------------------------p~S~l~ahk--------- 223 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM--------------------------PVSLLKAHK--------- 223 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccccc--------------------------hHHHHHHhh---------
Confidence 45699999999 456778888999999999987653 456688898
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCC
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD 146 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~ 146 (409)
.+|+.+.|+| .++..|++++.||.+..||..+
T Consensus 224 ---~~i~eV~FHp-k~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 224 ---AEIWEVHFHP-KNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ---hhhhheeccC-CCchheeEecCCCcEEEEcCCC
Confidence 8999999997 7788999999999999999876
No 307
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.46 E-value=1.7e-05 Score=71.45 Aligned_cols=110 Identities=17% Similarity=0.224 Sum_probs=76.8
Q ss_pred cccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEE
Q 015290 215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 293 (409)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~ 293 (409)
-.....+.+.+++|+.+.++.| .||+|.+||.. .+... . ....-.++.++|+|+| .++++|+..|.+.
T Consensus 256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~-~~~t~-~--------~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ 324 (545)
T PF11768_consen 256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTT-RGVTL-L--------AKAEFIPTLIAWHPDG-AIFVVGSEQGELQ 324 (545)
T ss_pred EecCCcceEEecCcccceEEEEecCCeEEEEEcC-CCeee-e--------eeecccceEEEEcCCC-cEEEEEcCCceEE
Confidence 4577889999999999999999 99999999987 33222 1 2234557899999999 9999999999999
Q ss_pred EEeCCCccccccccccccccccccCCccc-----ccccccceeeeEeccCCCE
Q 015290 294 LVDMRQSALCDHSARILRDAAESHGSKSF-----FTEIIASISDIKFANDGQH 341 (409)
Q Consensus 294 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~s~~g~~ 341 (409)
+||+.-+... .+.+.. +..+..+ .-.+...+..+.|.+....
T Consensus 325 ~FD~ALspi~---~qLlsE---d~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~~ 371 (545)
T PF11768_consen 325 CFDMALSPIK---MQLLSE---DATPKSTLQLSKYFRVSSSLVHIQWAPAPQL 371 (545)
T ss_pred EEEeecCccc---eeeccc---cCCCccEEeeehhccCcchhheeEeccCCCc
Confidence 9998765432 122211 2222221 1134556778888865433
No 308
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.45 E-value=9.9e-05 Score=66.85 Aligned_cols=131 Identities=15% Similarity=0.048 Sum_probs=77.5
Q ss_pred CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccc
Q 015290 230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR 308 (409)
Q Consensus 230 ~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 308 (409)
+..++.+ .+|.+..||.. +++.+.... .. ....... .+ ..++.++.+|.+..+|..+++..
T Consensus 241 ~~~vy~~~~~g~l~a~d~~-tG~~~W~~~-----~~----~~~~p~~--~~-~~vyv~~~~G~l~~~d~~tG~~~----- 302 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLR-SGRVLWKRD-----AS----SYQGPAV--DD-NRLYVTDADGVVVALDRRSGSEL----- 302 (377)
T ss_pred CCEEEEEEcCCEEEEEECC-CCcEEEeec-----cC----CccCceE--eC-CEEEEECCCCeEEEEECCCCcEE-----
Confidence 4466666 89999999998 665544321 11 1112222 34 56777888999999999888642
Q ss_pred cccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecccCcccccccccCCCCccce
Q 015290 309 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 387 (409)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 387 (409)
++. ... . ......... .+..|++++ +|.|+++|..+ ++.+..++.+...+.
T Consensus 303 -W~~-~~~-------~--~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t-G~~~~~~~~~~~~~~-------------- 354 (377)
T TIGR03300 303 -WKN-DEL-------K--YRQLTAPAV--VGGYLVVGDFEGYLHWLSRED-GSFVARLKTDGSGIA-------------- 354 (377)
T ss_pred -Ecc-ccc-------c--CCccccCEE--ECCEEEEEeCCCEEEEEECCC-CCEEEEEEcCCCccc--------------
Confidence 221 000 0 001112222 355777776 49999999986 888888876554321
Q ss_pred eeEEEcCCCCeEEEcccCCCC
Q 015290 388 FECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 388 ~~~~~spdg~~l~s~s~dg~i 408 (409)
...++. ++ .|+.++.||.|
T Consensus 355 ~sp~~~-~~-~l~v~~~dG~l 373 (377)
T TIGR03300 355 SPPVVV-GD-GLLVQTRDGDL 373 (377)
T ss_pred cCCEEE-CC-EEEEEeCCceE
Confidence 122222 33 47788888865
No 309
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2.1e-05 Score=67.17 Aligned_cols=79 Identities=8% Similarity=0.229 Sum_probs=63.0
Q ss_pred ccCCCcEEEEEECCCCC-EEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccc
Q 015290 29 LQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (409)
Q Consensus 29 ~~h~~~v~~v~~~~~~~-~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (409)
..|...|..++|+|..+ ++..++.+..|+|.|+++.. .+..+..|.
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~---------------------------~vssy~a~~------ 236 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC---------------------------VVSSYIAYN------ 236 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccce---------------------------eeeheeccC------
Confidence 34788999999999776 78889999999999998765 244455554
Q ss_pred ccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCce
Q 015290 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK 148 (409)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~ 148 (409)
.+++++|.- .+.++++.|...|.|.+||++..+
T Consensus 237 -------~~wSC~wDl-de~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 237 -------QIWSCCWDL-DERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred -------Cceeeeecc-CCcceeEEeccCceEEEEEccCCC
Confidence 899999952 445678888999999999998543
No 310
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=4.7e-07 Score=84.41 Aligned_cols=161 Identities=14% Similarity=0.219 Sum_probs=111.7
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (409)
..-+|++| +.+.+.|+.|+..|.|+++++.+|.....
T Consensus 1102 ~~fTc~af--s~~~~hL~vG~~~Geik~~nv~sG~~e~s----------------------------------------- 1138 (1516)
T KOG1832|consen 1102 ALFTCIAF--SGGTNHLAVGSHAGEIKIFNVSSGSMEES----------------------------------------- 1138 (1516)
T ss_pred cceeeEEe--ecCCceEEeeeccceEEEEEccCcccccc-----------------------------------------
Confidence 78999999 78889999999999999999998865432
Q ss_pred ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCC-eEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL-RINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (409)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~-~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (409)
.++|+..|+.+.-+.+|..+++. ... -..+|++.......+.+ ..-
T Consensus 1139 --------------------~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf-----------~ed 1187 (1516)
T KOG1832|consen 1139 --------------------VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSF-----------DED 1187 (1516)
T ss_pred --------------------ccccccccccccccCCcceeeeeccccCchHHHhccccccCccccc-----------ccc
Confidence 16899999999999999888765 333 56899998555544442 223
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeE
Q 015290 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350 (409)
Q Consensus 271 ~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v 350 (409)
.++.|+... +.-+.|.......+||+.++..+.. .+.. . .+....-+...|+|+..+++--+
T Consensus 1188 ~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~t---ylt~-~---------~~~~y~~n~a~FsP~D~LIlndG---- 1249 (1516)
T KOG1832|consen 1188 KAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQT---YLTD-T---------VTSSYSNNLAHFSPCDTLILNDG---- 1249 (1516)
T ss_pred ceeehhhhH-HHHHhcccccceEEEecccCcHHHH---hcCc-c---------hhhhhhccccccCCCcceEeeCc----
Confidence 578888765 4444455556689999999765432 1222 0 00122347789999988776433
Q ss_pred EEEEccCCCcceEEEec
Q 015290 351 KLWDIRMDSTPVATFKI 367 (409)
Q Consensus 351 ~iwd~~~~~~~~~~~~~ 367 (409)
.+||++. .+.++.|..
T Consensus 1250 vLWDvR~-~~aIh~FD~ 1265 (1516)
T KOG1832|consen 1250 VLWDVRI-PEAIHRFDQ 1265 (1516)
T ss_pred eeeeecc-HHHHhhhhh
Confidence 6899986 455555543
No 311
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.43 E-value=0.00016 Score=65.48 Aligned_cols=228 Identities=13% Similarity=0.073 Sum_probs=119.2
Q ss_pred CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccce-EEEEE
Q 015290 43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI-NRVRW 121 (409)
Q Consensus 43 ~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v-~~l~~ 121 (409)
.+..+++++.+|.|.-+|..+++. +-...-.. .+ ..+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~---------------------------~W~~~~~~-------------~~~~~p~- 102 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKR---------------------------LWRVDLDE-------------RLSGGVG- 102 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcE---------------------------eeeecCCC-------------CcccceE-
Confidence 356788888899999999888774 11111111 11 1122
Q ss_pred EecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEec
Q 015290 122 CAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANV 201 (409)
Q Consensus 122 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 201 (409)
.++..++.++.++.+..+|..+++.......... +. .......+.++. +. .++.+..+|.
T Consensus 103 ---v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~--~~------------~~p~v~~~~v~v-~~--~~g~l~a~d~ 162 (377)
T TIGR03300 103 ---ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE--VL------------SPPLVANGLVVV-RT--NDGRLTALDA 162 (377)
T ss_pred ---EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCce--ee------------cCCEEECCEEEE-EC--CCCeEEEEEc
Confidence 3566888888999999999999988766442211 00 000000111111 11 2667888887
Q ss_pred CCcccceeeeeeccccccce-----eEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc--Cc---e
Q 015290 202 GNSVHARCQKVYPHAHDFNI-----NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT--EV---I 270 (409)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v-----~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~--~~---v 270 (409)
++... +..+ ......+ .+.... +..++.+ .++.+..+|.+ ++..+....... ..+.. .. +
T Consensus 163 ~tG~~---~W~~-~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~-tG~~~W~~~~~~--~~g~~~~~~~~~~ 233 (377)
T TIGR03300 163 ATGER---LWTY-SRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQ-TGQPLWEQRVAL--PKGRTELERLVDV 233 (377)
T ss_pred CCCce---eeEE-ccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEcc-CCCEeeeecccc--CCCCCchhhhhcc
Confidence 65332 2111 1110000 011111 2466677 88999999987 555443321110 00000 00 0
Q ss_pred -EEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cC
Q 015290 271 -TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (409)
Q Consensus 271 -~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~ 348 (409)
.+..+. + ..++.++.+|.+..||..+++. .|.. .. .....+.. ++..++.++ ++
T Consensus 234 ~~~p~~~--~-~~vy~~~~~g~l~a~d~~tG~~------~W~~-~~------------~~~~~p~~--~~~~vyv~~~~G 289 (377)
T TIGR03300 234 DGDPVVD--G-GQVYAVSYQGRVAALDLRSGRV------LWKR-DA------------SSYQGPAV--DDNRLYVTDADG 289 (377)
T ss_pred CCccEEE--C-CEEEEEEcCCEEEEEECCCCcE------EEee-cc------------CCccCceE--eCCEEEEECCCC
Confidence 111122 3 5677788899999999998864 2322 00 01111222 345666555 59
Q ss_pred eEEEEEccCCCcceEEE
Q 015290 349 NLKLWDIRMDSTPVATF 365 (409)
Q Consensus 349 ~v~iwd~~~~~~~~~~~ 365 (409)
.|..+|..+ ++.+-..
T Consensus 290 ~l~~~d~~t-G~~~W~~ 305 (377)
T TIGR03300 290 VVVALDRRS-GSELWKN 305 (377)
T ss_pred eEEEEECCC-CcEEEcc
Confidence 999999975 6655443
No 312
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.36 E-value=0.00035 Score=59.09 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=68.6
Q ss_pred eeEEEeC-CCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcC-ccCceEEEEEeCCCCCEEEEEeCC--------C
Q 015290 221 INSISNN-SDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSSR--------G 290 (409)
Q Consensus 221 v~~l~~~-~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~d--------g 290 (409)
...+++. +++ .++.+..+.+.++|.. .++........ ... .....+.++++|+| ++.++.... |
T Consensus 42 ~~G~~~~~~~g-~l~v~~~~~~~~~d~~-~g~~~~~~~~~---~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g 115 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVADSGGIAVVDPD-TGKVTVLADLP---DGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPG 115 (246)
T ss_dssp EEEEEEECTTS-EEEEEETTCEEEEETT-TTEEEEEEEEE---TTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSE
T ss_pred CceEEEEccCC-EEEEEEcCceEEEecC-CCcEEEEeecc---CCCcccCCCceEEEcCCC-CEEEEecCCCcccccccc
Confidence 5667777 554 5555533445556887 55444333221 011 34567899999999 877765533 5
Q ss_pred eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEccCCC
Q 015290 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDS 359 (409)
Q Consensus 291 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~~~~ 359 (409)
.|..++.. ++.. ..... -...+.++|+|+++.|.... . +.|..+++...+
T Consensus 116 ~v~~~~~~-~~~~----~~~~~--------------~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~ 167 (246)
T PF08450_consen 116 SVYRIDPD-GKVT----VVADG--------------LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADG 167 (246)
T ss_dssp EEEEEETT-SEEE----EEEEE--------------ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTT
T ss_pred ceEEECCC-CeEE----EEecC--------------cccccceEECCcchheeecccccceeEEEeccccc
Confidence 57777766 3321 11111 23568899999999887664 4 899999986433
No 313
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.33 E-value=4.3e-07 Score=81.64 Aligned_cols=210 Identities=15% Similarity=0.208 Sum_probs=128.6
Q ss_pred CCcEEEEEECC--CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccc
Q 015290 32 VDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (409)
Q Consensus 32 ~~~v~~v~~~~--~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (409)
...+.|++++- +..++++|..+|.|.+-.+...... -.....+|.
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-------------------------s~E~tp~~a-------- 102 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-------------------------SAEVTPGYA-------- 102 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-------------------------cceeccccc--------
Confidence 45677888765 4458899999999999887654320 011223444
Q ss_pred ceeccceEEEEEEecCCCCEEEEE----eCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290 110 LEIEEKINRVRWCAAPNGSMFILS----TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (409)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (409)
...++++|.+ -|...||.| -.|-.+.|||+.++-........
T Consensus 103 ----r~Ct~lAwne-LDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~----------------------------- 148 (783)
T KOG1008|consen 103 ----RPCTSLAWNE-LDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPL----------------------------- 148 (783)
T ss_pred ----cccccccccc-ccHHHHHhhhhhhcccCCccceecccccCCCccccc-----------------------------
Confidence 6889999963 566677766 23557889998766321111100
Q ss_pred ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc
Q 015290 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (409)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~ 264 (409)
|..+-.....+++|-.+.+.+++| ....+.++|++........+
T Consensus 149 ---------------------------fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv-------- 193 (783)
T KOG1008|consen 149 ---------------------------FSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV-------- 193 (783)
T ss_pred ---------------------------cccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--------
Confidence 001112223477888888999999 88899999998322222111
Q ss_pred CccCceEEEEEeCCCCCEEEEEeCCCeEEEEe-CCCccccccccccccccccccCCcccccccccceeeeEeccCCC-EE
Q 015290 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD-MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HL 342 (409)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l 342 (409)
.+..+..+..+|-.+.++++-. ||.|.+|| .++-+ ........ .+.+. ...+..++|.|... .+
T Consensus 194 -nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnie---npl~~i~~-~~N~~--------~~~l~~~aycPtrtgll 259 (783)
T KOG1008|consen 194 -NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIE---NPLQIILR-NENKK--------PKQLFALAYCPTRTGLL 259 (783)
T ss_pred -hhhhcccceecCCCCCceeccc-cCceeeccchhhhc---cHHHHHhh-CCCCc--------ccceeeEEeccCCcchh
Confidence 2335667888884438888765 99999999 44322 11222211 11111 12588999999643 44
Q ss_pred EEee-c-CeEEEEEccC
Q 015290 343 LSRD-Y-MNLKLWDIRM 357 (409)
Q Consensus 343 ~sg~-~-~~v~iwd~~~ 357 (409)
++.. + ++|++||+..
T Consensus 260 a~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 260 AVLSRDSITIRLYDICV 276 (783)
T ss_pred hhhccCcceEEEecccc
Confidence 5544 5 9999999864
No 314
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.27 E-value=0.0014 Score=55.14 Aligned_cols=196 Identities=12% Similarity=0.023 Sum_probs=101.7
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCCc
Q 015290 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 204 (409)
Q Consensus 125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 204 (409)
+++..+++++.++.+..||..+++........... .... ....+.+ ++.. .++.+..+|..+.
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~--~~~~-~~~~~~v----------~v~~----~~~~l~~~d~~tG 96 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPI--SGAP-VVDGGRV----------YVGT----SDGSLYALDAKTG 96 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCG--GSGE-EEETTEE----------EEEE----TTSEEEEEETTTS
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccc--ccee-eeccccc----------cccc----ceeeeEecccCCc
Confidence 35668888899999999999999887776542111 0000 0011111 1111 2557777776654
Q ss_pred ccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCc---cCceEEEEEeCCCC
Q 015290 205 VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL---TEVITSAEFHPIYC 280 (409)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~p~~~ 280 (409)
.........................+..++.+ .++.|..+|.+ +++.+............+ ...+..-....++
T Consensus 97 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 174 (238)
T PF13360_consen 97 KVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPK-TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG- 174 (238)
T ss_dssp CEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETT-TTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-
T ss_pred ceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecC-CCcEEEEeecCCCCCCcceeeecccccceEEECC-
Confidence 33222111000000011122222237778888 89999999998 777765543321111100 0111222222333
Q ss_pred CEEEEEeCCCe-EEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCC
Q 015290 281 NLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD 358 (409)
Q Consensus 281 ~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~ 358 (409)
.++.++.++. +.+ |+.+++. .+.. . ...+.. ....++..|+.++ ++.|..||+++
T Consensus 175 -~v~~~~~~g~~~~~-d~~tg~~------~w~~-~------------~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~t- 231 (238)
T PF13360_consen 175 -RVYVSSGDGRVVAV-DLATGEK------LWSK-P------------ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKT- 231 (238)
T ss_dssp -EEEEECCTSSEEEE-ETTTTEE------EEEE-C------------SS-ECE-CEECCCTEEEEEETTTEEEEEETTT-
T ss_pred -EEEEEcCCCeEEEE-ECCCCCE------EEEe-c------------CCCccC-CceeeCCEEEEEeCCCEEEEEECCC-
Confidence 5555566664 555 9999863 2422 0 011222 1345677777776 59999999987
Q ss_pred Ccce
Q 015290 359 STPV 362 (409)
Q Consensus 359 ~~~~ 362 (409)
++.+
T Consensus 232 G~~~ 235 (238)
T PF13360_consen 232 GKVV 235 (238)
T ss_dssp TEEE
T ss_pred CCEE
Confidence 6543
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=6.5e-05 Score=65.18 Aligned_cols=230 Identities=8% Similarity=-0.032 Sum_probs=127.6
Q ss_pred ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (409)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (409)
.-|.+.|+.+.- ...+++++++.||.++.|.-..-....+... +....+.+.+...+-. .++....
T Consensus 6 ymhrd~i~hv~~---tka~fiiqASlDGh~KFWkKs~isGvEfVKh----------FraHL~~I~sl~~S~d-g~L~~Sv 71 (558)
T KOG0882|consen 6 YMHRDVITHVFP---TKAKFIIQASLDGHKKFWKKSRISGVEFVKH----------FRAHLGVILSLAVSYD-GWLFRSV 71 (558)
T ss_pred hcccceeeeEee---ehhheEEeeecchhhhhcCCCCccceeehhh----------hHHHHHHHHhhhcccc-ceeEeec
Confidence 344467777665 5567999999999999997654221111110 0111111111111111 1222221
Q ss_pred ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC--CeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcC
Q 015290 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (409)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (409)
...|..++++|+++......++.. -..+.+..+ .++.. ..++.+ .++.+.++|-.........+ -.-
T Consensus 72 ~d~Dhs~KvfDvEn~DminmiKL~--~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f------kkl 142 (558)
T KOG0882|consen 72 EDPDHSVKVFDVENFDMINMIKLV--DLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF------KKL 142 (558)
T ss_pred cCcccceeEEEeeccchhhhcccc--cCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCcccee------ccc
Confidence 223678889888764433333321 112222221 22221 134444 79999999988333222211 355
Q ss_pred ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (409)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg 345 (409)
|..+|..+.+.|-+ ..+++....|.|.-|.....-......-.+.. .... ..-.+..-.....++.|+|+|..+++-
T Consensus 143 H~sPV~~i~y~qa~-Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~-K~eT-dLy~f~K~Kt~pts~Efsp~g~qistl 219 (558)
T KOG0882|consen 143 HFSPVKKIRYNQAG-DSAVSIDISGMVEYWSAEGPFQFPRTNLNFEL-KHET-DLYGFPKAKTEPTSFEFSPDGAQISTL 219 (558)
T ss_pred ccCceEEEEeeccc-cceeeccccceeEeecCCCcccCccccccccc-cccc-hhhcccccccCccceEEccccCccccc
Confidence 88999999999999 99999999999999987631000000000111 0000 000111224567899999999999987
Q ss_pred e-cCeEEEEEccCCCcceEEEe
Q 015290 346 D-YMNLKLWDIRMDSTPVATFK 366 (409)
Q Consensus 346 ~-~~~v~iwd~~~~~~~~~~~~ 366 (409)
+ |..|++++.++ ++.++.+.
T Consensus 220 ~~DrkVR~F~~Kt-GklvqeiD 240 (558)
T KOG0882|consen 220 NPDRKVRGFVFKT-GKLVQEID 240 (558)
T ss_pred CcccEEEEEEecc-chhhhhhh
Confidence 5 59999999986 66665553
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=8.8e-05 Score=63.45 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=29.4
Q ss_pred cceEEEEEEecCCCC-EEEEEeCCCeEEEEEcCCceeee
Q 015290 114 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKK 151 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~ 151 (409)
..|.+++| ||..+ ++..++.+++|+|.|+.+.....
T Consensus 194 ~~Irdlaf--Sp~~~GLl~~asl~nkiki~dlet~~~vs 230 (463)
T KOG1645|consen 194 SFIRDLAF--SPFNEGLLGLASLGNKIKIMDLETSCVVS 230 (463)
T ss_pred hhhhhhcc--CccccceeeeeccCceEEEEecccceeee
Confidence 78999999 55555 78889999999999998875543
No 317
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.13 E-value=0.0018 Score=53.87 Aligned_cols=219 Identities=13% Similarity=0.213 Sum_probs=108.2
Q ss_pred CcEEEEEECCCC-CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeee--ecCCCcccccccc
Q 015290 33 DIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE--FQSHEPEFDYLKS 109 (409)
Q Consensus 33 ~~v~~v~~~~~~-~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~~~~~~~ 109 (409)
+.++.++|+|+. .++|+....+.|..++.++ +. ++. +.+.
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-~v---------------------------lr~i~l~g~--------- 64 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-KV---------------------------LRRIPLDGF--------- 64 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---E---------------------------EEEEE-SS----------
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCCC-CE---------------------------EEEEeCCCC---------
Confidence 459999999975 4667777778887777643 31 222 3332
Q ss_pred ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (409)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (409)
+..-.|++ -.++.++++.-.++.+.++++..........
T Consensus 65 ----~D~EgI~y--~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~----------------------------------- 103 (248)
T PF06977_consen 65 ----GDYEGITY--LGNGRYVLSEERDQRLYIFTIDDDTTSLDRA----------------------------------- 103 (248)
T ss_dssp ----SSEEEEEE---STTEEEEEETTTTEEEEEEE----TT--EE-----------------------------------
T ss_pred ----CCceeEEE--ECCCEEEEEEcCCCcEEEEEEeccccccchh-----------------------------------
Confidence 35678888 3566666666678999988884321100000
Q ss_pred ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccC--CCceeeeeecCC-CcCcC
Q 015290 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI--SDQCFNIVDMKP-SNMDD 265 (409)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~--~~~~~~~~~~~~-~~~~~ 265 (409)
.+.-+.+. +...+...+-.++|+|.++.|+.+ ...-..+|.+.. ....+....... .....
T Consensus 104 -----~~~~~~l~----------~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 104 -----DVQKISLG----------FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp -----EEEEEE-------------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred -----hceEEecc----------cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence 00000000 002345567899999998888888 766667777762 122222111100 00112
Q ss_pred ccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (409)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg 345 (409)
....+.+++++|...++++....+..|..+|. .|+.. ..+.. ..+ ...+...-...-.++|.++|++.++.
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~----~~~~L-~~g---~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVV----SSLSL-DRG---FHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EE----EEEE--STT---GGG-SS---SEEEEEE-TT--EEEEE
T ss_pred eeccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEE----EEEEe-CCc---ccCcccccCCccEEEECCCCCEEEEc
Confidence 33457899999987577777778888999994 44421 22221 000 00000011356789999999766665
Q ss_pred ecCeEEEE
Q 015290 346 DYMNLKLW 353 (409)
Q Consensus 346 ~~~~v~iw 353 (409)
--+..+++
T Consensus 240 EpNlfy~f 247 (248)
T PF06977_consen 240 EPNLFYRF 247 (248)
T ss_dssp TTTEEEEE
T ss_pred CCceEEEe
Confidence 43555443
No 318
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.12 E-value=8.7e-05 Score=68.09 Aligned_cols=167 Identities=14% Similarity=0.164 Sum_probs=103.8
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
|...|.=-+++..+++++.|+.-|.+.+|+..+++.. .....+-.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~--------------------------~~~~~~~~--------- 76 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR--------------------------KLKNEGAT--------- 76 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhh--------------------------cccccCcc---------
Confidence 4555665667778999999999999999998877641 11112222
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
+.+..+.. +++..++|.|+..|.|.++.++......... +
T Consensus 77 ---~~~~~~~v--s~~e~lvAagt~~g~V~v~ql~~~~p~~~~~-------------------~---------------- 116 (726)
T KOG3621|consen 77 ---GITCVRSV--SSVEYLVAAGTASGRVSVFQLNKELPRDLDY-------------------V---------------- 116 (726)
T ss_pred ---ceEEEEEe--cchhHhhhhhcCCceEEeehhhccCCCccee-------------------e----------------
Confidence 34444455 6777788888888999998877632211100 0
Q ss_pred cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (409)
.-.-..|...|++++|++++..+++| ..|.|.+-.+.. .. .+..+...+..-.+.
T Consensus 117 --------------------t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s-~~---~~~~~~q~il~~ds~ 172 (726)
T KOG3621|consen 117 --------------------TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS-RQ---AFLSKSQEILSEDSE 172 (726)
T ss_pred --------------------ccccccCCceEEEEEecccccEEeecCCCceEEEEEech-hh---hhccccceeeccCcc
Confidence 00014588999999999999999999 999999888873 11 111111223334566
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCc
Q 015290 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 300 (409)
Q Consensus 270 v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~ 300 (409)
|..+.+... .+|++.... ..++++..+
T Consensus 173 IVQlD~~q~--~LLVStl~r--~~Lc~tE~e 199 (726)
T KOG3621|consen 173 IVQLDYLQS--YLLVSTLTR--CILCQTEAE 199 (726)
T ss_pred eEEeecccc--eehHhhhhh--hheeecchh
Confidence 767766532 344443332 235555543
No 319
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.11 E-value=9.8e-07 Score=79.44 Aligned_cols=156 Identities=17% Similarity=0.172 Sum_probs=101.2
Q ss_pred cccccceeEEEeCC-CCCeEEEe-c----CCeEEEEEccCCC--ceeeeeecCCCcCcC-ccCceEEEEEeCCCCCEEEE
Q 015290 215 HAHDFNINSISNNS-DCETFVSA-D----DLRINLWNLEISD--QCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAY 285 (409)
Q Consensus 215 ~~~~~~v~~l~~~~-~~~~l~~~-~----d~~i~lwd~~~~~--~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s 285 (409)
.++..+.++++|++ |.+.||+| . |..+.|||+. ++ .+..... +.+ ......+++|..+. +++.+
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~-s~ltvPke~~~-----fs~~~l~gqns~cwlrd~-klvla 171 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN-SLLTVPKESPL-----FSSSTLDGQNSVCWLRDT-KLVLA 171 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecc-cccCCCccccc-----cccccccCccccccccCc-chhhc
Confidence 56777889999987 45778876 3 6689999998 43 1222111 222 23445689999887 89999
Q ss_pred EeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEecc-CCCEEEEeecCeEEEEE-ccCCCcceE
Q 015290 286 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDYMNLKLWD-IRMDSTPVA 363 (409)
Q Consensus 286 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~sg~~~~v~iwd-~~~~~~~~~ 363 (409)
|.....++++|+|..... ...+. ...+..+..+| .+.|+++-.++.|.+|| .+.-..++.
T Consensus 172 Gm~sr~~~ifdlRqs~~~---~~svn---------------Tk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~ 233 (783)
T KOG1008|consen 172 GMTSRSVHIFDLRQSLDS---VSSVN---------------TKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQ 233 (783)
T ss_pred ccccchhhhhhhhhhhhh---hhhhh---------------hhhcccceecCCCCCceeccccCceeeccchhhhccHHH
Confidence 999999999999853210 01111 13567788888 77899998899999999 443344554
Q ss_pred EEecccCcccccccccCCCCccceeeEEEcCCCC-eEEEcccCC
Q 015290 364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYRR 406 (409)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~s~s~dg 406 (409)
.+...+...+. .++.++|+|... .|++.+.|.
T Consensus 234 ~i~~~~N~~~~-----------~l~~~aycPtrtglla~l~RdS 266 (783)
T KOG1008|consen 234 IILRNENKKPK-----------QLFALAYCPTRTGLLAVLSRDS 266 (783)
T ss_pred HHhhCCCCccc-----------ceeeEEeccCCcchhhhhccCc
Confidence 44444433221 125899999643 455555543
No 320
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.11 E-value=0.00034 Score=49.26 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=47.8
Q ss_pred EEEEEECC---CC-CEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 35 VSAIEFDK---TG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 35 v~~v~~~~---~~-~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
|++|++.. || ..|++|+.|..|++|+-+. .+.++..+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-----------------------------~~~Ei~e~---------- 42 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-----------------------------IVAEITET---------- 42 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----------------------------EEEEEecc----------
Confidence 56666655 33 5789999999999998542 34444444
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV 144 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~ 144 (409)
+.|+++.-. .+..|+.+..+|+|-+|+-
T Consensus 43 ---~~v~~L~~~---~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 43 ---DKVTSLCSL---GGGRFAYALANGTVGVYDR 70 (111)
T ss_pred ---cceEEEEEc---CCCEEEEEecCCEEEEEeC
Confidence 478888873 3468999999999999965
No 321
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.10 E-value=0.0001 Score=69.56 Aligned_cols=117 Identities=18% Similarity=0.252 Sum_probs=77.4
Q ss_pred cccccceeEEEeCCCCCeEEEe-c---------CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEE
Q 015290 215 HAHDFNINSISNNSDCETFVSA-D---------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 284 (409)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~-~---------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 284 (409)
.+|.+.|..+.. .|+.|+++ . |.-|++||+++. ..+.. +.-+.++ .-+.|.|.-+..++
T Consensus 214 ~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~P-------I~~~~~P-~flrf~Psl~t~~~ 282 (1118)
T KOG1275|consen 214 DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMM-RALSP-------IQFPYGP-QFLRFHPSLTTRLA 282 (1118)
T ss_pred eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhh-hccCC-------cccccCc-hhhhhcccccceEE
Confidence 688888876665 47778774 2 445899999933 33322 1222222 56788888767899
Q ss_pred EEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEc
Q 015290 285 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDI 355 (409)
Q Consensus 285 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~ 355 (409)
.++..|...+-|..+-.........+.. -...+.++++|++|+.||.|.. |.|.+|--
T Consensus 283 V~S~sGq~q~vd~~~lsNP~~~~~~v~p-------------~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 283 VTSQSGQFQFVDTATLSNPPAGVKMVNP-------------NGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred EEecccceeeccccccCCCccceeEEcc-------------CCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 9999999999884332111000111111 1345999999999999999975 99999974
No 322
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.09 E-value=6.9e-05 Score=70.70 Aligned_cols=150 Identities=14% Similarity=0.158 Sum_probs=101.1
Q ss_pred EEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceecc
Q 015290 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (409)
Q Consensus 35 v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (409)
|+-|.. +++++.+|...|+|.+-|..+.+ .+.++..|+ +
T Consensus 180 v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~---------------------------~iht~~aHs------------~ 218 (1118)
T KOG1275|consen 180 VTIMRY--NNRNLFCGDTRGTVFLRDPNSFE---------------------------TIHTFDAHS------------G 218 (1118)
T ss_pred eEEEEe--cCcEEEeecccceEEeecCCcCc---------------------------eeeeeeccc------------c
Confidence 555554 47899999999999999988665 578899999 8
Q ss_pred ceEEEEEEecCCCCEEEEEeC---------CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCcee
Q 015290 115 KINRVRWCAAPNGSMFILSTN---------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (409)
Q Consensus 115 ~v~~l~~~~s~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (409)
.|.++.. .|+.|++|+. |..|+|||++..+.
T Consensus 219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra------------------------------------ 258 (1118)
T KOG1275|consen 219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA------------------------------------ 258 (1118)
T ss_pred ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhc------------------------------------
Confidence 8888775 6789999875 34456666654332
Q ss_pred ecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCC-CCeEEEe-cCCeEEEEEccCCCce-eeeeecCCCc
Q 015290 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQC-FNIVDMKPSN 262 (409)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~-~~~~~~~~~~ 262 (409)
-.+++.. -+ ..-+.|+|. ...++++ ..|...+-|......+ ..+.-
T Consensus 259 ---------------------l~PI~~~----~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~----- 307 (1118)
T KOG1275|consen 259 ---------------------LSPIQFP----YG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKM----- 307 (1118)
T ss_pred ---------------------cCCcccc----cC-chhhhhcccccceEEEEecccceeeccccccCCCccceeE-----
Confidence 2222211 11 133567776 3456666 8899988883311111 11110
Q ss_pred CcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeC
Q 015290 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (409)
Q Consensus 263 ~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~ 297 (409)
.......+..+++++++ +.++.|..+|.|.+|--
T Consensus 308 v~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 308 VNPNGSGISAFDISSNG-DALAFGDHEGHVNLWAD 341 (1118)
T ss_pred EccCCCcceeEEecCCC-ceEEEecccCcEeeecC
Confidence 12234558999999999 99999999999999973
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.09 E-value=0.00049 Score=67.30 Aligned_cols=192 Identities=14% Similarity=0.196 Sum_probs=102.9
Q ss_pred CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceee---eeeecCCCccc----
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRY---KTEFQSHEPEF---- 104 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~~---- 104 (409)
.+.|.+++||||++.++..+.++++.+-...=.-. ..+.+ .....--+.+++.-. -+.|+|...+-
T Consensus 109 d~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i------~E~~L-~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~ 181 (1265)
T KOG1920|consen 109 DNGISAASWSPDEELLALITGRQTLLFMTKDFEPI------AEKPL-DADDERKSKFVNVGWGRKETQFRGSEGRQAARQ 181 (1265)
T ss_pred cCceEEEeecCCCcEEEEEeCCcEEEEEeccccch------hcccc-ccccccccccceecccccceeeecchhhhcccc
Confidence 57899999999999999998888777654321000 00000 000000000010000 01122211000
Q ss_pred -----cccccceeccceEEEEEEecCCCCEEEEE----eCC-CeEEEEEcCCceeeeeeccCCCcccccccccccccCce
Q 015290 105 -----DYLKSLEIEEKINRVRWCAAPNGSMFILS----TND-KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (409)
Q Consensus 105 -----~~~~~~~~~~~v~~l~~~~s~~~~~l~s~----~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (409)
..+...+....=++|.| .-||+++++. ..+ +.|++||-+ +.+..... +..+.--
T Consensus 182 ~~~~ek~~~~~~~~~~~~~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se-------------~~~~l~~ 245 (1265)
T KOG1920|consen 182 KIEKEKALEQIEQDDHKTSISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSE-------------PVEGLQH 245 (1265)
T ss_pred cccccccccchhhccCCceEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccC-------------ccccccc
Confidence 00111112234457999 6899999883 233 899999976 43322211 1122222
Q ss_pred eccCCCCCceeecccc-cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEE---e-cCCeEEEEEcc
Q 015290 175 NEHNPPSFAHGYHLEW-TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS---A-DDLRINLWNLE 247 (409)
Q Consensus 175 ~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~---~-~d~~i~lwd~~ 247 (409)
...|-|.+..+++... ..++.|.++.-+.-..+.-...+ ......+..++|+.++..|++ . ....|++|-+.
T Consensus 246 ~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~-p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 246 SLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPF-PLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred ceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCC-cccccchheeeecCCCCceeeeecccccceEEEEEec
Confidence 3344555555555443 44557888887664444333222 233344899999999999987 4 55669999887
No 324
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.09 E-value=0.0052 Score=55.94 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=31.8
Q ss_pred cceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecc
Q 015290 328 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIH 368 (409)
Q Consensus 328 ~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~ 368 (409)
+++..++.||+|++||.-.+ |.+.+...+. .+.+..+...
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~~ 257 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDTD 257 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeecC
Confidence 57999999999999998876 9999988765 5556565544
No 325
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.09 E-value=1.4e-05 Score=71.87 Aligned_cols=80 Identities=18% Similarity=0.339 Sum_probs=64.3
Q ss_pred CccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccc
Q 015290 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (409)
Q Consensus 26 ~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (409)
+..+.....|.+++++|+.+.|+.|+.||.|.+||...+.. .+....
T Consensus 253 vtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t-----------------------------~~~ka~---- 299 (545)
T PF11768_consen 253 VTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT-----------------------------LLAKAE---- 299 (545)
T ss_pred EEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee-----------------------------eeeeec----
Confidence 44445778999999999999999999999999999876532 122222
Q ss_pred ccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCce
Q 015290 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK 148 (409)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~ 148 (409)
-.++.++| +|+|..+++|+..|.+.+||+.-..
T Consensus 300 --------~~P~~iaW--Hp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 300 --------FIPTLIAW--HPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred --------ccceEEEE--cCCCcEEEEEcCCceEEEEEeecCc
Confidence 35788999 5899999999999999999987543
No 326
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.00021 Score=66.66 Aligned_cols=113 Identities=18% Similarity=0.200 Sum_probs=79.3
Q ss_pred CCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCC----CCCEEEEEeCCCeEEEEeCCCcc
Q 015290 227 NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI----YCNLLAYSSSRGFVRLVDMRQSA 301 (409)
Q Consensus 227 ~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~~l~s~s~dg~i~iwd~~~~~ 301 (409)
.-+|++++++ .||+|.|-.+. +.+....++ ...++.+++++|+ ..+.+++|+.-| +.++.-+--.
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~-~~~~~~~~d--------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg 149 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLF-TDDEITQYD--------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG 149 (846)
T ss_pred ccCCceEEEecCCCcEEEeecc-CCccceeEe--------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence 5679999999 99999999888 444444332 2357899999998 226899999888 7777532110
Q ss_pred ccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEec
Q 015290 302 LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKI 367 (409)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~ 367 (409)
..... . +....++|.++.|. |.++|-++|-.|++||..+ ++.+..++.
T Consensus 150 ---nk~~v-~-----------l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~-~~~l~~i~~ 197 (846)
T KOG2066|consen 150 ---NKDSV-V-----------LSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPT-RQRLTNIPP 197 (846)
T ss_pred ---Cccce-e-----------eecCccceEEEEec--CcEEEEecCCCcEEEeccc-cceeeccCC
Confidence 00011 1 12225799999998 7799999998899999986 666655553
No 327
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.02 E-value=0.0095 Score=53.34 Aligned_cols=248 Identities=13% Similarity=0.193 Sum_probs=119.7
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccc-ccc-cc-cc--ccCceeccCCCCCceeecc
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVS-SEN-TL-LA--EKNFMNEHNPPSFAHGYHL 188 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~-~~-~~--~~~~~~~~~~~~~~~~~~~ 188 (409)
..+....| +|+|+.++... ++.|.+++..++...++.... ...+. .+. +. .. -+......+++++..++..
T Consensus 43 ~~~~~~~~--sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~ 118 (353)
T PF00930_consen 43 PKLQDAKW--SPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL 118 (353)
T ss_dssp TTBSEEEE---SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred ccccccee--ecCCCeeEEEe-cCceEEEECCCCCeEEecccc-ceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence 57888999 79999988876 467999998777555443322 11111 111 00 00 1112233345555444433
Q ss_pred cccc--------------------------------cc--eeEEEecCCcccceeeee-eccccccceeEEEeCCCCCeE
Q 015290 189 EWTE--------------------------------NM--ATKIANVGNSVHARCQKV-YPHAHDFNINSISNNSDCETF 233 (409)
Q Consensus 189 ~~~~--------------------------------~~--~i~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l 233 (409)
.+.. +- .+.++++.+......... -.......+..+.|.++++.+
T Consensus 119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l 198 (353)
T PF00930_consen 119 RFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRL 198 (353)
T ss_dssp EEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred EECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEE
Confidence 2210 01 345566654332211100 002335567889999998844
Q ss_pred EEe---c---CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEe-CCCCCEEEEEeCCCeEEE--EeCCCccccc
Q 015290 234 VSA---D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH-PIYCNLLAYSSSRGFVRL--VDMRQSALCD 304 (409)
Q Consensus 234 ~~~---~---d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~s~dg~i~i--wd~~~~~~~~ 304 (409)
+.. . ...+.+.|.. .+......... ..+--..-....|. +++..++.....+|.-+| ++...+..
T Consensus 199 ~~~~~nR~q~~~~l~~~d~~-tg~~~~~~~e~---~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-- 272 (353)
T PF00930_consen 199 WVQWLNRDQNRLDLVLCDAS-TGETRVVLEET---SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-- 272 (353)
T ss_dssp EEEEEETTSTEEEEEEEEEC-TTTCEEEEEEE---SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE--
T ss_pred EEEEcccCCCEEEEEEEECC-CCceeEEEEec---CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce--
Confidence 432 1 2245666776 33332222111 11111222345554 666455556667775444 45555432
Q ss_pred cccccccccccccCCccccccccccee-eeEeccCCCEEE-Eee--c-CeEEEEEccCC-CcceEEEecccCcccccccc
Q 015290 305 HSARILRDAAESHGSKSFFTEIIASIS-DIKFANDGQHLL-SRD--Y-MNLKLWDIRMD-STPVATFKIHEHLRPKLCDL 378 (409)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~g~~l~-sg~--~-~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~ 378 (409)
+.+.. ..-.|. -+.++++++.|. ++. + ..-.||-+... +..+..+.......
T Consensus 273 ---~~lT~-------------G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~------ 330 (353)
T PF00930_consen 273 ---RQLTS-------------GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH------ 330 (353)
T ss_dssp ---EESS--------------SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT------
T ss_pred ---ecccc-------------CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc------
Confidence 22211 023453 477888887654 443 2 45555555443 44455554333321
Q ss_pred cCCCCccceeeEEEcCCCCeEEEc
Q 015290 379 YNNDSIFDKFECSVSGDGLHFATG 402 (409)
Q Consensus 379 ~~~~~~~~v~~~~~spdg~~l~s~ 402 (409)
..+.|||||++++-.
T Consensus 331 ---------~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 331 ---------YSASFSPDGKYYVDT 345 (353)
T ss_dssp ---------EEEEE-TTSSEEEEE
T ss_pred ---------eEEEECCCCCEEEEE
Confidence 279999999988743
No 328
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.00 E-value=0.0001 Score=66.64 Aligned_cols=144 Identities=18% Similarity=0.188 Sum_probs=89.3
Q ss_pred cccceeEEEeCCCCCeEEEe--c--C-CeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCe
Q 015290 217 HDFNINSISNNSDCETFVSA--D--D-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 291 (409)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~~--~--d-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~ 291 (409)
....+..-+|+|+++.++.. . . ..+.++++. .+....... +.++ -...+|+|||.+++++...||.
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~-~g~~~~i~~-----~~g~---~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLN-TGKRPVILN-----FNGN---NGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEecc-CCccceeec-----cCCc---cCCccCCCCCCEEEEEECCCCC
Confidence 34456667899999877653 2 2 358999998 444333321 2333 3467899999555666667775
Q ss_pred --EEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec--Ce--EEEEEccCCCcceEEE
Q 015290 292 --VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MN--LKLWDIRMDSTPVATF 365 (409)
Q Consensus 292 --i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~--~~--v~iwd~~~~~~~~~~~ 365 (409)
|.++|+.++.. .+ +.. . .+.-..-.|+|||++|+-.+| |. |.++|.. +.....+
T Consensus 262 ~~iy~~dl~~~~~----~~-Lt~-~------------~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~--g~~~~ri 321 (425)
T COG0823 262 PDIYLMDLDGKNL----PR-LTN-G------------FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE--GSQVTRL 321 (425)
T ss_pred ccEEEEcCCCCcc----ee-ccc-C------------CccccCccCCCCCCEEEEEeCCCCCcceEEECCC--CCceeEe
Confidence 55567766542 12 221 0 122336789999999997765 54 5555654 5554555
Q ss_pred ecccCcccccccccCCCCccceeeEEEcCCCCeEEEccc
Q 015290 366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (409)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~ 404 (409)
......- ..-.|||||++|+..+.
T Consensus 322 T~~~~~~---------------~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 322 TFSGGGN---------------SNPVWSPDGDKIVFESS 345 (425)
T ss_pred eccCCCC---------------cCccCCCCCCEEEEEec
Confidence 5444332 26789999999987764
No 329
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.00 E-value=0.0078 Score=54.14 Aligned_cols=103 Identities=16% Similarity=0.174 Sum_probs=59.6
Q ss_pred cEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhh-------hcccc-----cccC-----CCceeeeee
Q 015290 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELE-------KQMDF-----TSTS-----HPEYRYKTE 96 (409)
Q Consensus 34 ~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-------~~~~~-----~~~~-----~~~~~~~~~ 96 (409)
.|++|.|.++..-||+|...|.|.||.....+... .......+. +.... +.++ ...+.+...
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG-NREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC-ccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 58999999998889999999999999987654311 000001111 11000 0111 112344444
Q ss_pred ecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeee
Q 015290 97 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI 152 (409)
Q Consensus 97 ~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 152 (409)
+.... ++|++++. | |=.+++.|..+|.+.|.|++.......
T Consensus 82 ~~~~~------------g~vtal~~--S-~iGFvaigy~~G~l~viD~RGPavI~~ 122 (395)
T PF08596_consen 82 LDAKQ------------GPVTALKN--S-DIGFVAIGYESGSLVVIDLRGPAVIYN 122 (395)
T ss_dssp E---S-------------SEEEEEE----BTSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred eeccC------------CcEeEEec--C-CCcEEEEEecCCcEEEEECCCCeEEee
Confidence 44444 89999998 4 444999999999999999988766554
No 330
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.99 E-value=0.00079 Score=61.06 Aligned_cols=113 Identities=19% Similarity=0.137 Sum_probs=61.5
Q ss_pred EEEeCCCCCeEEEe--cCCe--EEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeC-CCe--EEEE
Q 015290 223 SISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGF--VRLV 295 (409)
Q Consensus 223 ~l~~~~~~~~l~~~--~d~~--i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~-dg~--i~iw 295 (409)
.=.|+|||+.++.. ..|. |.+++.+ +.....+ ......-..-.|+|+| ++++..+. +|. |.+.
T Consensus 286 ~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~--g~~~~ri-------T~~~~~~~~p~~SpdG-~~i~~~~~~~g~~~i~~~ 355 (425)
T COG0823 286 SPSWSPDGSKIVFTSDRGGRPQIYLYDLE--GSQVTRL-------TFSGGGNSNPVWSPDG-DKIVFESSSGGQWDIDKN 355 (425)
T ss_pred CccCCCCCCEEEEEeCCCCCcceEEECCC--CCceeEe-------eccCCCCcCccCCCCC-CEEEEEeccCCceeeEEe
Confidence 44799999999875 5555 4445555 3322321 1122222277899999 77776654 344 5555
Q ss_pred eCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec--CeEEEEEccCCCcceE
Q 015290 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVA 363 (409)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~--~~v~iwd~~~~~~~~~ 363 (409)
|+.++.. .+.+.. ........|.|+|+.+...+. +.=.++.+...++...
T Consensus 356 ~~~~~~~----~~~lt~--------------~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~ 407 (425)
T COG0823 356 DLASGGK----IRILTS--------------TYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSR 407 (425)
T ss_pred ccCCCCc----EEEccc--------------cccCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEE
Confidence 6555431 123322 234456788889988775432 3334444433344443
No 331
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.0013 Score=62.20 Aligned_cols=135 Identities=12% Similarity=0.118 Sum_probs=79.1
Q ss_pred eeEEEeCCCCCeEEE-e-cCC----eEEEEEccCC-----CceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC
Q 015290 221 INSISNNSDCETFVS-A-DDL----RINLWNLEIS-----DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR 289 (409)
Q Consensus 221 v~~l~~~~~~~~l~~-~-~d~----~i~lwd~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d 289 (409)
|..+....+..+|++ | +++ .+++|+++.. ..++....+-+...+....++.+++.+.+- +.+|.|-.+
T Consensus 68 v~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~n 146 (933)
T KOG2114|consen 68 VQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTN 146 (933)
T ss_pred hhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecC
Confidence 333433333456665 4 444 6899999743 123322222222234446778999999987 999999999
Q ss_pred CeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCE-EEEeecCeEEEEEccCCCcc--eEEEe
Q 015290 290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRDYMNLKLWDIRMDSTP--VATFK 366 (409)
Q Consensus 290 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~sg~~~~v~iwd~~~~~~~--~~~~~ 366 (409)
|.|..+.-.--+.. ..+.--. ..-..+|+.+++..+++. +.+++-..|.+|.+. ++. ...+.
T Consensus 147 G~V~~~~GDi~RDr--gsr~~~~-----------~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~--gr~p~~~~ld 211 (933)
T KOG2114|consen 147 GLVICYKGDILRDR--GSRQDYS-----------HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS--GRTPSLKVLD 211 (933)
T ss_pred cEEEEEcCcchhcc--ccceeee-----------ccCCCCceeeEEecCCceeEEEEecceeEEEEec--CCCcceeeec
Confidence 99988852211100 0011100 011468999999999987 445555899999997 343 33354
Q ss_pred cccCc
Q 015290 367 IHEHL 371 (409)
Q Consensus 367 ~~~~~ 371 (409)
.|+..
T Consensus 212 ~~G~~ 216 (933)
T KOG2114|consen 212 NNGIS 216 (933)
T ss_pred cCCcc
Confidence 44443
No 332
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.93 E-value=0.012 Score=51.62 Aligned_cols=156 Identities=15% Similarity=0.090 Sum_probs=67.0
Q ss_pred cccceeEEEeCCCCCeEEE-e----cCCe-EEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEE-Ee--
Q 015290 217 HDFNINSISNNSDCETFVS-A----DDLR-INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY-SS-- 287 (409)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~-~----~d~~-i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s-~s-- 287 (409)
....+..+.|+|....+++ + .+.. -+||-++..+.....+.. ......+..=-|.|+| ..+.. +.
T Consensus 186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~-----~~~~e~~gHEfw~~DG-~~i~y~~~~~ 259 (386)
T PF14583_consen 186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR-----RMEGESVGHEFWVPDG-STIWYDSYTP 259 (386)
T ss_dssp ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--------TTEEEEEEEE-TTS-S-EEEEEEET
T ss_pred cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec-----CCCCcccccccccCCC-CEEEEEeecC
Confidence 4455678899997655443 3 3332 366766655554444211 1112445566789999 54443 22
Q ss_pred --CCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE-eec--C--------------
Q 015290 288 --SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDY--M-------------- 348 (409)
Q Consensus 288 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s-g~~--~-------------- 348 (409)
.+..|.-+|..+++.. ..... .+...+--++||++++. |+| .
T Consensus 260 ~~~~~~i~~~d~~t~~~~----~~~~~---------------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p 320 (386)
T PF14583_consen 260 GGQDFWIAGYDPDTGERR----RLMEM---------------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDP 320 (386)
T ss_dssp TT--EEEEEE-TTT--EE----EEEEE----------------SEEEEEE-TTSSEEEEEE-------------------
T ss_pred CCCceEEEeeCCCCCCce----EEEeC---------------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCc
Confidence 2445677777775421 11111 13345566788888764 333 1
Q ss_pred eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (409)
Q Consensus 349 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s 403 (409)
-|+++++.. ++ ...+..|...-..+........ -...|+|||++++..|
T Consensus 321 ~i~~~~~~~-~~-~~~l~~h~~sw~v~~~~~q~~h----Php~FSPDgk~VlF~S 369 (386)
T PF14583_consen 321 WIYLFDVEA-GR-FRKLARHDTSWKVLDGDRQVTH----PHPSFSPDGKWVLFRS 369 (386)
T ss_dssp EEEEEETTT-TE-EEEEEE-------BTTBSSTT--------EE-TTSSEEEEEE
T ss_pred EEEEecccc-Cc-eeeeeeccCcceeecCCCccCC----CCCccCCCCCEEEEEC
Confidence 456677763 33 2333334321100000000001 2689999999877554
No 333
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.91 E-value=0.0094 Score=49.73 Aligned_cols=165 Identities=12% Similarity=0.104 Sum_probs=77.7
Q ss_pred cceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCcee-----eeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeE
Q 015290 219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF-----NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 292 (409)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i 292 (409)
+..-.+++..++.++++. .++.+.++++......+ ..+.+.. ...+...+-.++|+|.+ +.|+.+-...-.
T Consensus 65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~--~~~~N~G~EGla~D~~~-~~L~v~kE~~P~ 141 (248)
T PF06977_consen 65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGF--PNKGNKGFEGLAYDPKT-NRLFVAKERKPK 141 (248)
T ss_dssp SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE-----S---SS--EEEEEETTT-TEEEEEEESSSE
T ss_pred CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEeccc--ccCCCcceEEEEEcCCC-CEEEEEeCCCCh
Confidence 345678888888777777 79999999985322221 1121111 12355678999999998 666666665556
Q ss_pred EEEeCCC--ccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEccCCCcceEEEecc
Q 015290 293 RLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIH 368 (409)
Q Consensus 293 ~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~~~~~~~~~~~~~ 368 (409)
.+|.++. ............. .. .......+.+++++|....|..-+ . ..|..+|.. |+++..+.-.
T Consensus 142 ~l~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--G~~~~~~~L~ 211 (248)
T PF06977_consen 142 RLYEVNGFPGGFDLFVSDDQDL-DD-------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--GRVVSSLSLD 211 (248)
T ss_dssp EEEEEESTT-SS--EEEE-HHH-H--------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-S
T ss_pred hhEEEccccCccceeecccccc-cc-------ccceeccccceEEcCCCCeEEEEECCCCeEEEECCC--CCEEEEEEeC
Confidence 6666543 1100000000000 00 011124578899999765444444 3 899999954 8877766543
Q ss_pred cCcccccccccCCCCccceeeEEEcCCCCeEEEc
Q 015290 369 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402 (409)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~ 402 (409)
.+..... ..+-..-.++|.++|++.++.
T Consensus 212 ~g~~gl~------~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 212 RGFHGLS------KDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp TTGGG-S------S---SEEEEEE-TT--EEEEE
T ss_pred CcccCcc------cccCCccEEEECCCCCEEEEc
Confidence 3210000 000111389999999765543
No 334
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.89 E-value=0.0084 Score=53.82 Aligned_cols=48 Identities=15% Similarity=0.072 Sum_probs=38.9
Q ss_pred ccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCc
Q 015290 323 FTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHL 371 (409)
Q Consensus 323 ~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~ 371 (409)
+.+....+.+++.+|++++.|+.+. |.|.|+|+.. +..+..++|..+.
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdA 351 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDA 351 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccc
Confidence 4455667899999999988888765 9999999986 7888888876664
No 335
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.84 E-value=0.014 Score=53.18 Aligned_cols=107 Identities=11% Similarity=-0.031 Sum_probs=61.5
Q ss_pred CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccc
Q 015290 230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR 308 (409)
Q Consensus 230 ~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 308 (409)
+..++.+ .+|.+..+|.. +++.+.... +. ....+.. .+ ..++.++.+|.+..+|..+++.
T Consensus 256 ~~~vy~~~~~g~l~ald~~-tG~~~W~~~-----~~----~~~~~~~--~~-~~vy~~~~~g~l~ald~~tG~~------ 316 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLR-SGQIVWKRE-----YG----SVNDFAV--DG-GRIYLVDQNDRVYALDTRGGVE------ 316 (394)
T ss_pred CCEEEEEEcCCeEEEEECC-CCCEEEeec-----CC----CccCcEE--EC-CEEEEEcCCCeEEEEECCCCcE------
Confidence 4455555 88999999998 555443311 11 1112222 24 5677778899999999988864
Q ss_pred cccccccccCCcccccccccceeeeEeccCCCEEEEee-cCeEEEEEccCCCcceEEEecc
Q 015290 309 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH 368 (409)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~ 368 (409)
.|...... .....+.... +.+|+.++ +|.|.+.|..+ ++.+...+..
T Consensus 317 ~W~~~~~~----------~~~~~sp~v~--~g~l~v~~~~G~l~~ld~~t-G~~~~~~~~~ 364 (394)
T PRK11138 317 LWSQSDLL----------HRLLTAPVLY--NGYLVVGDSEGYLHWINRED-GRFVAQQKVD 364 (394)
T ss_pred EEcccccC----------CCcccCCEEE--CCEEEEEeCCCEEEEEECCC-CCEEEEEEcC
Confidence 23220000 0011112221 34556665 59999999986 8877766543
No 336
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.82 E-value=0.00087 Score=64.55 Aligned_cols=104 Identities=18% Similarity=0.105 Sum_probs=72.3
Q ss_pred CeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccc
Q 015290 231 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI 309 (409)
Q Consensus 231 ~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 309 (409)
...+.| .+..+..||.+..+..+-.-..+ .-.......|++-+.+| +||.|+.+|.||+||- .++..
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v~~~~k---~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~A------ 610 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSK---QYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRA------ 610 (794)
T ss_pred CceEEEECCCceEEeccCCCCCceeecccc---ccccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhh------
Confidence 356677 99999999999654322110011 11234557888888887 8999999999999994 22211
Q ss_pred ccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEcc
Q 015290 310 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 356 (409)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~ 356 (409)
.+.+.+-..+|..+..+.||+||++.++..|.|++..
T Consensus 611 ----------KT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 611 ----------KTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred ----------hhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 1112333579999999999999999888888888864
No 337
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.81 E-value=0.0021 Score=59.85 Aligned_cols=103 Identities=8% Similarity=0.060 Sum_probs=64.0
Q ss_pred cceeEEEecCCccc--ceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceee-eeecCC---CcCc
Q 015290 193 NMATKIANVGNSVH--ARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFN-IVDMKP---SNMD 264 (409)
Q Consensus 193 ~~~i~~~~~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~-~~~~~~---~~~~ 264 (409)
++.|.+.|..+... ...+..+ .-......++++|||++++++ .+.++.+.|+......+. .++.+. .+..
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yI--PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYV--PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCEEEEEECCccccCCcceEEEE--ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 45677888765110 1122221 234556789999999999876 799999999984332110 000000 0011
Q ss_pred CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCC
Q 015290 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (409)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~ 299 (409)
-.......+|+++| +.+.+...|..|..||+..
T Consensus 373 -vGlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 -LGLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred -cCCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence 12234577899998 8888888999999999876
No 338
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.75 E-value=0.0069 Score=54.23 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=26.4
Q ss_pred CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCc
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGK 65 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~ 65 (409)
...+....|||+|+++|... ++.|.+++..++.
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~ 74 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQ 74 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCC
Confidence 35788999999999999885 6789999887664
No 339
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.75 E-value=0.0025 Score=58.07 Aligned_cols=137 Identities=12% Similarity=0.017 Sum_probs=78.9
Q ss_pred ccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEE
Q 015290 216 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (409)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iw 295 (409)
.....+..+.++|+|++++.+.||.-.|+... ..... ..+.-..+.|.+.+ .+|+-...+.|.++
T Consensus 30 ~~~~~p~~ls~npngr~v~V~g~geY~iyt~~-~~r~k------------~~G~g~~~vw~~~n--~yAv~~~~~~I~I~ 94 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVCGDGEYEIYTAL-AWRNK------------AFGSGLSFVWSSRN--RYAVLESSSTIKIY 94 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEEETTEEEEEETT-TTEEE------------EEEE-SEEEE-TSS--EEEEE-TTS-EEEE
T ss_pred CCCcCCeeEEECCCCCEEEEEcCCEEEEEEcc-CCccc------------ccCceeEEEEecCc--cEEEEECCCeEEEE
Confidence 34445789999999999999988888888844 22111 11334578899854 56766668889997
Q ss_pred eCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecccCccccc
Q 015290 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKL 375 (409)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 375 (409)
.--..+. .+.+.. ...+..+-. |.+|+..+++.|.+||+.+ ++.+..+.... +
T Consensus 95 kn~~~~~----~k~i~~--------------~~~~~~If~---G~LL~~~~~~~i~~yDw~~-~~~i~~i~v~~--v--- 147 (443)
T PF04053_consen 95 KNFKNEV----VKSIKL--------------PFSVEKIFG---GNLLGVKSSDFICFYDWET-GKLIRRIDVSA--V--- 147 (443)
T ss_dssp ETTEE-T----T-------------------SS-EEEEE----SSSEEEEETTEEEEE-TTT---EEEEESS-E------
T ss_pred EcCcccc----ceEEcC--------------CcccceEEc---CcEEEEECCCCEEEEEhhH-cceeeEEecCC--C---
Confidence 3222111 112222 112222222 8888888778999999986 88888887543 2
Q ss_pred ccccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290 376 CDLYNNDSIFDKFECSVSGDGLHFATGSYRR 406 (409)
Q Consensus 376 ~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg 406 (409)
..+.|+++|.++|-.+.+.
T Consensus 148 ------------k~V~Ws~~g~~val~t~~~ 166 (443)
T PF04053_consen 148 ------------KYVIWSDDGELVALVTKDS 166 (443)
T ss_dssp ------------EEEEE-TTSSEEEEE-S-S
T ss_pred ------------cEEEEECCCCEEEEEeCCe
Confidence 4899999999999887764
No 340
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.71 E-value=0.0087 Score=55.90 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=44.3
Q ss_pred cceeeeEeccCCCEEEEeec--CeEEEEEccCCCc-----------ceEEEecccCcccccccccCCCCccceeeEEEcC
Q 015290 328 ASISDIKFANDGQHLLSRDY--MNLKLWDIRMDST-----------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 394 (409)
Q Consensus 328 ~~i~~~~~s~~g~~l~sg~~--~~v~iwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 394 (409)
.....+.++|||+++++++. .+|.|.|+.+... .+.......++ ...+|++
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP----------------LHTaFDg 384 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP----------------LHTAFDG 384 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc----------------ceEEECC
Confidence 45788999999999998763 9999999975221 12333332232 4789999
Q ss_pred CCCeEEEcccCCCC
Q 015290 395 DGLHFATGSYRRDN 408 (409)
Q Consensus 395 dg~~l~s~s~dg~i 408 (409)
+|....|.--|..|
T Consensus 385 ~G~aytslf~dsqv 398 (635)
T PRK02888 385 RGNAYTTLFLDSQI 398 (635)
T ss_pred CCCEEEeEeeccee
Confidence 98876666555543
No 341
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.70 E-value=0.014 Score=51.57 Aligned_cols=116 Identities=15% Similarity=0.096 Sum_probs=69.3
Q ss_pred ccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEE
Q 015290 216 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (409)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iw 295 (409)
...++|++++-- +..|+.+.++.|.+|++.........- .......+.++... + ++++.|.....+.++
T Consensus 86 ~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~------~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 86 EVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKA------FYDSPFYITSLSVF--K-NYILVGDAMKSVSLL 154 (321)
T ss_dssp EESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEE------EE-BSSSEEEEEEE--T-TEEEEEESSSSEEEE
T ss_pred eecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhh------eecceEEEEEEecc--c-cEEEEEEcccCEEEE
Confidence 346778888766 445777777899999999333133321 11122356666655 4 688888887778877
Q ss_pred eCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEcc
Q 015290 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIR 356 (409)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~ 356 (409)
..+..... ...+.. +. ...+++++.|-++++.++.++. |.+.++...
T Consensus 155 ~~~~~~~~---l~~va~---d~--------~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 155 RYDEENNK---LILVAR---DY--------QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEETTTE----EEEEEE---ES--------S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEccCCE---EEEEEe---cC--------CCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 54431100 122221 00 1246888899877777777775 999999875
No 342
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.69 E-value=0.014 Score=53.37 Aligned_cols=58 Identities=9% Similarity=0.093 Sum_probs=37.3
Q ss_pred CCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCC
Q 015290 230 CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (409)
Q Consensus 230 ~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~ 299 (409)
|..|+...++.|.+||+. ++..++.++ -..|..+.|+++| .+++..+.+ .+.+++...
T Consensus 117 G~LL~~~~~~~i~~yDw~-~~~~i~~i~---------v~~vk~V~Ws~~g-~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 117 GNLLGVKSSDFICFYDWE-TGKLIRRID---------VSAVKYVIWSDDG-ELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp SSSEEEEETTEEEEE-TT-T--EEEEES---------S-E-EEEEE-TTS-SEEEEE-S--SEEEEEE-H
T ss_pred CcEEEEECCCCEEEEEhh-HcceeeEEe---------cCCCcEEEEECCC-CEEEEEeCC-eEEEEEecc
Confidence 777776666689999999 777777642 1248899999999 888888765 577777544
No 343
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.66 E-value=0.00042 Score=63.82 Aligned_cols=122 Identities=11% Similarity=0.141 Sum_probs=86.9
Q ss_pred cccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEE
Q 015290 217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (409)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iw 295 (409)
+...|.--+++..+++++.| .-|.+++|+-. .+..... +..+..+.+.....+++. .++|.|+..|.|.++
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~-~~~~~~~------~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ 103 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRH-TGEMRKL------KNEGATGITCVRSVSSVE-YLVAAGTASGRVSVF 103 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecC-chhhhcc------cccCccceEEEEEecchh-HhhhhhcCCceEEee
Confidence 44445555567789999999 99999999987 4444332 133345667777888887 899999999999999
Q ss_pred eCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccC
Q 015290 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM 357 (409)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~ 357 (409)
-+....... ....-.. -..|...|++++|++++..+.+|++ |.|.+-.++.
T Consensus 104 ql~~~~p~~-~~~~t~~----------d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 104 QLNKELPRD-LDYVTPC----------DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhhccCCCc-ceeeccc----------cccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 887633211 1111111 1126779999999999999999987 9998877764
No 344
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.58 E-value=0.0049 Score=50.91 Aligned_cols=86 Identities=10% Similarity=0.024 Sum_probs=52.4
Q ss_pred cccceeEEEeCCCCCeEEEe-cCCe----EEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCe
Q 015290 217 HDFNINSISNNSDCETFVSA-DDLR----INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 291 (409)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~~-~d~~----i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~ 291 (409)
+.-.|..++..+||..++.+ ..|. --+--....++.+..++++++.......+|-+++.+.+..-..++.-..+.
T Consensus 224 ~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~ 303 (366)
T COG3490 224 RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNR 303 (366)
T ss_pred hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCe
Confidence 44567788888888766654 3221 111112224555666555544444455678888888665244555556677
Q ss_pred EEEEeCCCccc
Q 015290 292 VRLVDMRQSAL 302 (409)
Q Consensus 292 i~iwd~~~~~~ 302 (409)
..+||..++..
T Consensus 304 ~vi~da~tG~v 314 (366)
T COG3490 304 AVIWDAATGAV 314 (366)
T ss_pred EEEEEcCCCcE
Confidence 88999999874
No 345
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.52 E-value=0.0016 Score=61.44 Aligned_cols=72 Identities=18% Similarity=0.307 Sum_probs=60.6
Q ss_pred CcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCcccccccccee
Q 015290 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (409)
Q Consensus 33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (409)
-.+++++|+|..-.||.|-.-|.+.+|...+.+. .+....|.
T Consensus 60 ~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~---------------------------htv~~th~----------- 101 (1416)
T KOG3617|consen 60 VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET---------------------------HTVVETHP----------- 101 (1416)
T ss_pred eehhhhccChHHHHHhhccccceeEEEecCCcee---------------------------eeeccCCC-----------
Confidence 3467899999988899999999999999887652 23345566
Q ss_pred ccceEEEEEEecCCCCEEEEEeCCCeEEEEEcC
Q 015290 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR 145 (409)
Q Consensus 113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~ 145 (409)
.+|..+.| |++|..++++..-|.+.+|...
T Consensus 102 -a~i~~l~w--S~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 102 -APIQGLDW--SHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred -CCceeEEe--cCCCCeEEEcCCCceeEEEEee
Confidence 89999999 8999999999999999999876
No 346
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.49 E-value=0.00025 Score=39.58 Aligned_cols=30 Identities=27% Similarity=0.586 Sum_probs=28.2
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEe
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~ 60 (409)
|...|.++.|++++.++++++.|+.+++|+
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 778999999999999999999999999996
No 347
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.46 E-value=0.00045 Score=38.47 Aligned_cols=37 Identities=27% Similarity=0.626 Sum_probs=31.0
Q ss_pred eeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEE
Q 015290 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWK 143 (409)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd 143 (409)
+...+..|. ..|.++.| .+++..+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~------------~~i~~~~~--~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHT------------GPVTSVAF--SPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecC------------CceeEEEE--CCCCCEEEEecCCCeEEEcC
Confidence 345566777 79999999 57778999999999999996
No 348
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00092 Score=60.91 Aligned_cols=74 Identities=23% Similarity=0.221 Sum_probs=60.0
Q ss_pred cceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceE-EEEEeCCCCCEEEEEeCCCeEEEEe
Q 015290 219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT-SAEFHPIYCNLLAYSSSRGFVRLVD 296 (409)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~s~dg~i~iwd 296 (409)
..+.-+.|+|.-..+|.+ .+|.+.+..+. -+.+.+ ++-+...++ +++|.||| +.||.|-.||+|++.|
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwt-------ip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWT-------IPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHD 90 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec--cceeEe-------ccCCCCccceeeeecCCC-CEEEEEecCCeEEEEE
Confidence 456778999999999999 99999999887 333444 333444455 99999999 9999999999999999
Q ss_pred CCCccc
Q 015290 297 MRQSAL 302 (409)
Q Consensus 297 ~~~~~~ 302 (409)
..++..
T Consensus 91 ve~~~~ 96 (665)
T KOG4640|consen 91 VEKGGR 96 (665)
T ss_pred ccCCCc
Confidence 998754
No 349
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.42 E-value=0.052 Score=49.53 Aligned_cols=30 Identities=10% Similarity=0.174 Sum_probs=23.9
Q ss_pred CCCEEEEEeCCCeEEEEEcCCceeeeeecc
Q 015290 126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEM 155 (409)
Q Consensus 126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 155 (409)
++..++.++.++.+..+|..+++.......
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 345777888899999999999988776553
No 350
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0013 Score=59.88 Aligned_cols=80 Identities=18% Similarity=0.261 Sum_probs=64.3
Q ss_pred CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccce
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (409)
...|.-+.|+|.-.++|++..+|.|.+..+.-.+ +.++.-|.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qR----------------------------lwtip~p~---------- 61 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQR----------------------------LWTIPIPG---------- 61 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEeccce----------------------------eEeccCCC----------
Confidence 4578899999999999999999999888876332 33444344
Q ss_pred eccceE-EEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeee
Q 015290 112 IEEKIN-RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIK 153 (409)
Q Consensus 112 ~~~~v~-~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 153 (409)
..++ +++| .|||+.|+.|-.||+|++.|+..+......
T Consensus 62 --~~v~~sL~W--~~DGkllaVg~kdG~I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 62 --ENVTASLCW--RPDGKLLAVGFKDGTIRLHDVEKGGRLVSF 100 (665)
T ss_pred --Cccceeeee--cCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence 4555 9999 799999999999999999999988765543
No 351
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.33 E-value=0.059 Score=52.45 Aligned_cols=71 Identities=11% Similarity=0.170 Sum_probs=52.2
Q ss_pred cccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEE
Q 015290 217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (409)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iw 295 (409)
......|++-+.+| ++|+| .+|.|++||-- ... .++ .+++...+|..|..+.|| +++++.+ +..|.++
T Consensus 576 ~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~-AKT------~lp~lG~pI~~iDvt~DG-kwilaTc-~tyLlLi 644 (794)
T PF08553_consen 576 SKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKR-AKT------ALPGLGDPIIGIDVTADG-KWILATC-KTYLLLI 644 (794)
T ss_pred cCCCceEEEecCCc-eEEEEeCCCcEEeeccc-chh-hhh------cCCCCCCCeeEEEecCCC-cEEEEee-cceEEEE
Confidence 34456788888877 67777 99999999954 322 222 267888999999999999 7776554 5567788
Q ss_pred eCC
Q 015290 296 DMR 298 (409)
Q Consensus 296 d~~ 298 (409)
+..
T Consensus 645 ~t~ 647 (794)
T PF08553_consen 645 DTL 647 (794)
T ss_pred EEe
Confidence 753
No 352
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.32 E-value=0.094 Score=45.51 Aligned_cols=129 Identities=11% Similarity=0.098 Sum_probs=74.7
Q ss_pred eeEEEeCCCCCeEEEe-c---------CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEe-CC
Q 015290 221 INSISNNSDCETFVSA-D---------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR 289 (409)
Q Consensus 221 v~~l~~~~~~~~l~~~-~---------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s-~d 289 (409)
.+.+...|+|.+.++. . ...-.+|.+.-.+...+. ...+-..-+.++||||+ +.|+.+. ..
T Consensus 113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l-------~~~~~~~~NGla~SpDg-~tly~aDT~~ 184 (307)
T COG3386 113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL-------LDDDLTIPNGLAFSPDG-KTLYVADTPA 184 (307)
T ss_pred CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe-------ecCcEEecCceEECCCC-CEEEEEeCCC
Confidence 4556677777666554 3 011134444422333333 34444556789999999 6666554 45
Q ss_pred CeEEEEeCCC--ccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-CeEEEEEccCCCcceEEE
Q 015290 290 GFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATF 365 (409)
Q Consensus 290 g~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~~v~iwd~~~~~~~~~~~ 365 (409)
+.|.-|++.. +..... .... .+....+..-.++...+|.+-+++. . +.|.+|+.+ ++++..+
T Consensus 185 ~~i~r~~~d~~~g~~~~~-~~~~-----------~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd--G~l~~~i 250 (307)
T COG3386 185 NRIHRYDLDPATGPIGGR-RGFV-----------DFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD--GKLLGEI 250 (307)
T ss_pred CeEEEEecCcccCccCCc-ceEE-----------EccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC--CcEEEEE
Confidence 7888887763 111100 0000 0111234566778888898876553 3 499999986 8899888
Q ss_pred ecccCc
Q 015290 366 KIHEHL 371 (409)
Q Consensus 366 ~~~~~~ 371 (409)
......
T Consensus 251 ~lP~~~ 256 (307)
T COG3386 251 KLPVKR 256 (307)
T ss_pred ECCCCC
Confidence 877544
No 353
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.30 E-value=0.0013 Score=38.68 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=29.6
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccC
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG 63 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~ 63 (409)
-...|.+++|+|...+||.|..+|.|.||.+..
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 356799999999999999999999999999843
No 354
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.22 E-value=0.097 Score=43.83 Aligned_cols=141 Identities=11% Similarity=-0.006 Sum_probs=72.4
Q ss_pred CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEecCCcccceeeeeecc
Q 015290 136 DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPH 215 (409)
Q Consensus 136 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 215 (409)
+++|..||..+++.......... . ...... .......++.+ ..++.+..+|..+.. .+..+ .
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~--~---------~~~~~~-~~~~~~~v~~~--~~~~~l~~~d~~tG~---~~W~~-~ 63 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG--I---------GGPVAT-AVPDGGRVYVA--SGDGNLYALDAKTGK---VLWRF-D 63 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS--C---------SSEEET-EEEETTEEEEE--ETTSEEEEEETTTSE---EEEEE-E
T ss_pred CCEEEEEECCCCCEEEEEECCCC--C---------CCccce-EEEeCCEEEEE--cCCCEEEEEECCCCC---EEEEe-e
Confidence 68899999988888777654210 0 000000 00011111221 136788888876633 22222 1
Q ss_pred ccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeee-ecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEE
Q 015290 216 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV-DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 293 (409)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~ 293 (409)
. ...+..... ..+..++.+ .++.+..+|.. +++.+... .... .... ..........+ ..++.+..++.|.
T Consensus 64 ~-~~~~~~~~~-~~~~~v~v~~~~~~l~~~d~~-tG~~~W~~~~~~~---~~~~-~~~~~~~~~~~-~~~~~~~~~g~l~ 135 (238)
T PF13360_consen 64 L-PGPISGAPV-VDGGRVYVGTSDGSLYALDAK-TGKVLWSIYLTSS---PPAG-VRSSSSPAVDG-DRLYVGTSSGKLV 135 (238)
T ss_dssp C-SSCGGSGEE-EETTEEEEEETTSEEEEEETT-TSCEEEEEEE-SS---CTCS-TB--SEEEEET-TEEEEEETCSEEE
T ss_pred c-cccccceee-ecccccccccceeeeEecccC-Ccceeeeeccccc---cccc-cccccCceEec-CEEEEEeccCcEE
Confidence 1 111111111 134455655 78899999987 66665542 1110 1111 11222222225 7788888899999
Q ss_pred EEeCCCccc
Q 015290 294 LVDMRQSAL 302 (409)
Q Consensus 294 iwd~~~~~~ 302 (409)
.+|.++|+.
T Consensus 136 ~~d~~tG~~ 144 (238)
T PF13360_consen 136 ALDPKTGKL 144 (238)
T ss_dssp EEETTTTEE
T ss_pred EEecCCCcE
Confidence 999999875
No 355
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.15 Score=46.14 Aligned_cols=143 Identities=11% Similarity=0.082 Sum_probs=90.3
Q ss_pred ceeEEEeCCCCCeEEEe-c---CCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEE
Q 015290 220 NINSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (409)
Q Consensus 220 ~v~~l~~~~~~~~l~~~-~---d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iw 295 (409)
....++++|+++.+..+ . ++++.+.|.. +........ .+. .+ ..++++|+|...+++-..++.|.+.
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~-t~~~~~~~~------vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi 187 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA-TNKVTATIP------VGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVI 187 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCC-CCeEEEEEe------cCC-Cc-ceEEECCCCCeEEEEecCCCeEEEE
Confidence 44678999999888876 4 5788888877 455444431 111 22 7899999993355555578999999
Q ss_pred eCCCccccc-cccccccccccccCCcccccccccceeeeEeccCCCEEEEeec----CeEEEEEccCCCcceEE-Eeccc
Q 015290 296 DMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVAT-FKIHE 369 (409)
Q Consensus 296 d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~----~~v~iwd~~~~~~~~~~-~~~~~ 369 (409)
|........ ........ ......+.++|+|.++....+ +.+...|..+ +..... +....
T Consensus 188 ~~~~~~v~~~~~~~~~~~--------------~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~~ 252 (381)
T COG3391 188 DTSGNSVVRGSVGSLVGV--------------GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVGS 252 (381)
T ss_pred eCCCcceecccccccccc--------------CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC-ceEEEecccccc
Confidence 977654310 00000111 234567899999997776543 4888888875 444333 22222
Q ss_pred -CcccccccccCCCCccceeeEEEcCCCCeEEEc
Q 015290 370 -HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402 (409)
Q Consensus 370 -~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~ 402 (409)
.+ ..+..+|+|+++.+.
T Consensus 253 ~~~----------------~~v~~~p~g~~~yv~ 270 (381)
T COG3391 253 GAP----------------RGVAVDPAGKAAYVA 270 (381)
T ss_pred CCC----------------CceeECCCCCEEEEE
Confidence 12 378899999877665
No 356
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.18 E-value=0.11 Score=45.99 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=46.8
Q ss_pred ceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCC
Q 015290 220 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (409)
Q Consensus 220 ~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~ 298 (409)
.+.++... +++++.| ....+.++..+.....+..+. -......++++.|-+++ ..++.+..+|.+.++...
T Consensus 131 ~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va-----~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 131 YITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVA-----RDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEE-----EESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-
T ss_pred EEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEE-----ecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEEC
Confidence 45555554 5688888 777788776653233333321 11234568999999887 799999999999999876
Q ss_pred C
Q 015290 299 Q 299 (409)
Q Consensus 299 ~ 299 (409)
.
T Consensus 203 ~ 203 (321)
T PF03178_consen 203 P 203 (321)
T ss_dssp S
T ss_pred C
Confidence 3
No 357
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.17 E-value=0.17 Score=45.67 Aligned_cols=83 Identities=16% Similarity=0.335 Sum_probs=50.5
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
..++|++++.|.-| ++|.|..+|.+.|.|+.+.... +-..+..|. ...
T Consensus 85 ~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI-------------------------~~~~i~~~~------~~~ 132 (395)
T PF08596_consen 85 KQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVI-------------------------YNENIRESF------LSK 132 (395)
T ss_dssp -S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEE-------------------------EEEEGGG--------T-S
T ss_pred cCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEE-------------------------eeccccccc------ccc
Confidence 36899999998555 9999999999999999766531 111122110 000
Q ss_pred eeccceEEEEEEe---cCCC---CEEEEEeCCCeEEEEEcC
Q 015290 111 EIEEKINRVRWCA---APNG---SMFILSTNDKTIKLWKVR 145 (409)
Q Consensus 111 ~~~~~v~~l~~~~---s~~~---~~l~s~~~d~~i~iwd~~ 145 (409)
.....|+++.|.. ..|+ -.+++|...|.+.+|.+.
T Consensus 133 ~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 133 SSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp S----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred ccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEe
Confidence 1115788888853 1222 357788888999999774
No 358
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.16 E-value=0.044 Score=38.79 Aligned_cols=64 Identities=19% Similarity=0.178 Sum_probs=38.6
Q ss_pred ccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEe---CCCCCEEEEEeCCCeEE
Q 015290 218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH---PIYCNLLAYSSSRGFVR 293 (409)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---p~~~~~l~s~s~dg~i~ 293 (409)
...|.++.-... ..++.+ .+|+|-+|+-. ....+. + .+..+.++.+. -+|..-|++|-.+|.|-
T Consensus 42 ~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRi---K------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 42 TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRI---K------SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeee---c------cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 345667766655 568888 99999999865 222221 1 12234555543 34445788888888763
No 359
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.99 E-value=0.0023 Score=60.51 Aligned_cols=114 Identities=10% Similarity=-0.021 Sum_probs=81.9
Q ss_pred ccCceeccCCCCCceeecccc--cccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEc
Q 015290 170 EKNFMNEHNPPSFAHGYHLEW--TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL 246 (409)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~ 246 (409)
.+......|+|.-.+++.+++ ...|.+.|+--.. .+.+.. .-.-.+++++|+|..-.|+.| .-|.+.+|..
T Consensus 15 davsti~SWHPsePlfAVA~fS~er~GSVtIfadtG----EPqr~V--t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIFADTG----EPQRDV--TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKT 88 (1416)
T ss_pred cccccccccCCCCceeEEEEecCCCCceEEEEecCC----CCCccc--ccceehhhhccChHHHHHhhccccceeEEEec
Confidence 333444567777777777776 3456787774332 222111 112335679999998888999 9999999998
Q ss_pred cCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCC
Q 015290 247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (409)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~ 298 (409)
. ..+ ..++ ...|..+|..+.|+++| ..++++..-|.+.+|...
T Consensus 89 ~-~~e-~htv------~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 89 N-TTE-THTV------VETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred C-Cce-eeee------ccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence 8 333 3332 46699999999999999 999999999999999765
No 360
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.039 Score=49.84 Aligned_cols=101 Identities=16% Similarity=0.162 Sum_probs=67.5
Q ss_pred EEe-cCCeEEEEEccCCCc-eeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccccc
Q 015290 234 VSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR 311 (409)
Q Consensus 234 ~~~-~d~~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 311 (409)
+.| .+..|.-||.+..+. .+.....+. +. ......|.+-..+| +++.||.+|.|++||. .+...
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kq--y~-~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~A-------- 463 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQ--YS-TKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRA-------- 463 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccc--cc-cccccceeeecCCc--eEEEeecCCcEEeehh-hhhhh--------
Confidence 457 899999999985554 222211110 11 12345677767666 8999999999999996 32211
Q ss_pred ccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEcc
Q 015290 312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 356 (409)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~ 356 (409)
.+.+.+-..+|..+..+.||++|++.++..+.+-++.
T Consensus 464 --------KTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 464 --------KTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred --------hhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 1112333568999999999999998888777777754
No 361
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.79 E-value=0.41 Score=43.78 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=24.1
Q ss_pred cceeEEEeCCCCCeEEEecCCeEEEEEcc
Q 015290 219 FNINSISNNSDCETFVSADDLRINLWNLE 247 (409)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~~d~~i~lwd~~ 247 (409)
+.+.++.|+.+.+.++...||.+++||+.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence 78899999987655555599999999997
No 362
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.70 E-value=0.26 Score=45.53 Aligned_cols=70 Identities=11% Similarity=-0.040 Sum_probs=43.2
Q ss_pred EEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCC
Q 015290 223 SISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (409)
Q Consensus 223 ~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~ 299 (409)
.+.|||....|+.= ....-.+++++.....++. + + ...+.|.|.+|.+||.+++++.+..=.-++||-..
T Consensus 117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVka-D-----i-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKA-D-----I-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cccccCCCceEEEEecCceeEeeeeeeCCceEEE-e-----c-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 46799998877764 3333346677644433332 1 2 34578999999999944444444444567888554
No 363
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.67 E-value=0.32 Score=40.96 Aligned_cols=208 Identities=12% Similarity=0.134 Sum_probs=118.0
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (409)
..|.++.| +|+.+.|++......-.+|=-.+|+........
T Consensus 86 ~nvS~LTy--np~~rtLFav~n~p~~iVElt~~GdlirtiPL~------------------------------------- 126 (316)
T COG3204 86 ANVSSLTY--NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT------------------------------------- 126 (316)
T ss_pred ccccceee--CCCcceEEEecCCCceEEEEecCCceEEEeccc-------------------------------------
Confidence 56999999 788888888877776666655666665553321
Q ss_pred ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeee--cCCCcCcCccCce
Q 015290 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD--MKPSNMDDLTEVI 270 (409)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~--~~~~~~~~~~~~v 270 (409)
+ -...-.+++..++++.++- .++.+.++.+......+.... ++...........
T Consensus 127 ----------------------g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~Gf 183 (316)
T COG3204 127 ----------------------G-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGF 183 (316)
T ss_pred ----------------------c-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCc
Confidence 1 1122457777778777777 889998888774333322211 1111222225667
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee-c-C
Q 015290 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-M 348 (409)
Q Consensus 271 ~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~-~-~ 348 (409)
..++|+|.. ..|..+-...-+.||.+.... ..+..|. .........-.-..+.++.|++....|.+-+ + +
T Consensus 184 EGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~------~~l~~~~-~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr 255 (316)
T COG3204 184 EGLAWDPVD-HRLFVAKERNPIGIFEVTQSP------SSLSVHA-SLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESR 255 (316)
T ss_pred eeeecCCCC-ceEEEEEccCCcEEEEEecCC------ccccccc-ccCcccccceEeeccccceecCCCCcEEEEecCCc
Confidence 899999998 777777666667777665322 1111110 0000000000124678889987655555444 3 7
Q ss_pred eEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeE
Q 015290 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 399 (409)
Q Consensus 349 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 399 (409)
.+.-.|.. +.++..+.-+.+......+ +-..-.++..++|..-
T Consensus 256 ~l~Evd~~--G~~~~~lsL~~g~~gL~~d------ipqaEGiamDd~g~lY 298 (316)
T COG3204 256 RLLEVDLS--GEVIELLSLTKGNHGLSSD------IPQAEGIAMDDDGNLY 298 (316)
T ss_pred eEEEEecC--CCeeeeEEeccCCCCCccc------CCCcceeEECCCCCEE
Confidence 77777765 6666665544433211111 1111367888877643
No 364
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.67 E-value=0.46 Score=45.54 Aligned_cols=75 Identities=13% Similarity=0.078 Sum_probs=43.4
Q ss_pred ccceeEEEeCCCCCeEEEecCCeEEEEEccC--CCceeeeeecCCCcC-cCccCceEEEEEeCCCCCEEEEEeCCCeEEE
Q 015290 218 DFNINSISNNSDCETFVSADDLRINLWNLEI--SDQCFNIVDMKPSNM-DDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 294 (409)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~--~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~i 294 (409)
...|..+.|+|||..++...++.|.+=-+.. .+. ...- .+..+ ......+.++.|.+++ .++ .+..++.-.+
T Consensus 447 ~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~--~~~~l~~~l~~~~~~l~W~~~~-~L~-V~~~~~~~~v 521 (591)
T PRK13616 447 PGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALT--NPREVGPGLGDTAVSLDWRTGD-SLV-VGRSDPEHPV 521 (591)
T ss_pred CCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeec--ccEEeecccCCccccceEecCC-EEE-EEecCCCCce
Confidence 4569999999999999887457777632221 232 2210 00111 2233446889999998 654 5554444445
Q ss_pred EeC
Q 015290 295 VDM 297 (409)
Q Consensus 295 wd~ 297 (409)
|.+
T Consensus 522 ~~v 524 (591)
T PRK13616 522 WYV 524 (591)
T ss_pred EEE
Confidence 543
No 365
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.5 Score=42.82 Aligned_cols=206 Identities=10% Similarity=0.065 Sum_probs=124.7
Q ss_pred EEEEECCCCCE-EEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceecc
Q 015290 36 SAIEFDKTGDY-LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (409)
Q Consensus 36 ~~v~~~~~~~~-la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (409)
..+++++++.. .++...++.|.+.|..+.... .....+ .
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~--------------------------~~~~vG--------------~ 116 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL--------------------------GSIPVG--------------L 116 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCccccee--------------------------eEeeec--------------c
Confidence 46678887774 444445688999996655420 001111 2
Q ss_pred ceEEEEEEecCCCCEEEEEeC---CCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290 115 KINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (409)
Q Consensus 115 ~v~~l~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (409)
....+++ +++++.+..+.. ++++.+.|..++.......
T Consensus 117 ~P~~~~~--~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~------------------------------------- 157 (381)
T COG3391 117 GPVGLAV--DPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP------------------------------------- 157 (381)
T ss_pred CCceEEE--CCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-------------------------------------
Confidence 3556788 788888877644 6788888877765543311
Q ss_pred ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccCc
Q 015290 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (409)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (409)
.+. .+ ..++++|+|+.++.. .++.|.+.|.. ...... ........ -...
T Consensus 158 -----------------------vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~-~~~v~~--~~~~~~~~-~~~~ 208 (381)
T COG3391 158 -----------------------VGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTS-GNSVVR--GSVGSLVG-VGTG 208 (381)
T ss_pred -----------------------cCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCC-Ccceec--cccccccc-cCCC
Confidence 111 22 778999999977776 69999999977 333221 00000011 1233
Q ss_pred eEEEEEeCCCCCEEEEEe-CC--CeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290 270 ITSAEFHPIYCNLLAYSS-SR--GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (409)
Q Consensus 270 v~~~~~~p~~~~~l~s~s-~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~ 346 (409)
...+.++|+| ..+.... .+ +.+...|..++..... .... . -. ....+..+|+|+++.+..
T Consensus 209 P~~i~v~~~g-~~~yV~~~~~~~~~v~~id~~~~~v~~~---~~~~---~---------~~-~~~~v~~~p~g~~~yv~~ 271 (381)
T COG3391 209 PAGIAVDPDG-NRVYVANDGSGSNNVLKIDTATGNVTAT---DLPV---G---------SG-APRGVAVDPAGKAAYVAN 271 (381)
T ss_pred CceEEECCCC-CEEEEEeccCCCceEEEEeCCCceEEEe---cccc---c---------cC-CCCceeECCCCCEEEEEe
Confidence 4688999999 6444433 33 5888889888653210 0011 0 01 345689999999988874
Q ss_pred -c-CeEEEEEccCCCcceEEEec
Q 015290 347 -Y-MNLKLWDIRMDSTPVATFKI 367 (409)
Q Consensus 347 -~-~~v~iwd~~~~~~~~~~~~~ 367 (409)
. +.+.+-|..+ ......+..
T Consensus 272 ~~~~~V~vid~~~-~~v~~~~~~ 293 (381)
T COG3391 272 SQGGTVSVIDGAT-DRVVKTGPT 293 (381)
T ss_pred cCCCeEEEEeCCC-Cceeeeecc
Confidence 4 8999999875 444444443
No 366
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.57 E-value=0.0018 Score=61.59 Aligned_cols=122 Identities=10% Similarity=0.064 Sum_probs=65.7
Q ss_pred CCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEE-----------EeCCCCCEEEEEeCCCeEEE
Q 015290 227 NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE-----------FHPIYCNLLAYSSSRGFVRL 294 (409)
Q Consensus 227 ~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~p~~~~~l~s~s~dg~i~i 294 (409)
-++.-++..+ .++.|++..+..... .. +.+|..++..++ .+||| +.|+.++.||.++.
T Consensus 192 ~~~~~~ic~~~~~~~i~lL~~~ra~~--~l-------~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 192 AVNKVYICYGLKGGEIRLLNINRALR--SL-------FRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGF 261 (1283)
T ss_pred ccccceeeeccCCCceeEeeechHHH--HH-------HHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCccce
Confidence 3455667778 888888877652222 22 344654444433 68999 99999999999998
Q ss_pred EeCCC-ccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec--CeEEEEEccCCCcce
Q 015290 295 VDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPV 362 (409)
Q Consensus 295 wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~--~~v~iwd~~~~~~~~ 362 (409)
|.+.- ++........|+.|...|..-..+..|...+-.+- .-.++++++| ..+++|.... -+|+
T Consensus 262 ~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~---~w~~~Itttd~nre~k~w~~a~-w~Cl 328 (1283)
T KOG1916|consen 262 YQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIG---KWVLRITTTDVNREEKFWAEAP-WQCL 328 (1283)
T ss_pred eeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccc---eeEEEEecccCCcceeEeeccc-hhhh
Confidence 87642 32222233445554322211111111111111110 0135667776 7799998753 4444
No 367
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.55 E-value=0.012 Score=34.64 Aligned_cols=30 Identities=17% Similarity=0.577 Sum_probs=27.6
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcC
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR 145 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~ 145 (409)
..|..++| +|...+||.+..+|.|.+++++
T Consensus 12 ~~v~~~~w--~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSW--CPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEE--CCCCCEEEEEECCCeEEEEECC
Confidence 68999999 6889999999999999999994
No 368
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.52 E-value=0.39 Score=40.16 Aligned_cols=160 Identities=13% Similarity=0.121 Sum_probs=86.5
Q ss_pred eeEEEeCCCC-CeEEEe-cCCe-EEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeC-----CCeE
Q 015290 221 INSISNNSDC-ETFVSA-DDLR-INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-----RGFV 292 (409)
Q Consensus 221 v~~l~~~~~~-~~l~~~-~d~~-i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~-----dg~i 292 (409)
-..++++|.. .-++.+ .-|+ ..++|.......+.....+..-+.+| =.|+||| .+|+..-. .|.|
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH------Gvfs~dG-~~LYATEndfd~~rGVi 142 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH------GVFSPDG-RLLYATENDFDPNRGVI 142 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc------cccCCCC-cEEEeecCCCCCCCceE
Confidence 3467888874 445556 5554 57889883333333322221222333 4689999 88776543 3789
Q ss_pred EEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEE--------EccCCCcc-eE
Q 015290 293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW--------DIRMDSTP-VA 363 (409)
Q Consensus 293 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iw--------d~~~~~~~-~~ 363 (409)
-|||.+.+-. .+..+ ..|.-....+.|.+||+.|+.+. |.|..- ++.+ .++ +.
T Consensus 143 GvYd~r~~fq---rvgE~-------------~t~GiGpHev~lm~DGrtlvvan-GGIethpdfgR~~lNlds-MePSlv 204 (366)
T COG3490 143 GVYDAREGFQ---RVGEF-------------STHGIGPHEVTLMADGRTLVVAN-GGIETHPDFGRTELNLDS-MEPSLV 204 (366)
T ss_pred EEEecccccc---eeccc-------------ccCCcCcceeEEecCCcEEEEeC-CceecccccCccccchhh-cCccEE
Confidence 9999986421 12222 33344567789999999998764 333322 2221 122 12
Q ss_pred EEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290 364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR 405 (409)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d 405 (409)
.+..-.+..-+...+-......+++.++..+||+.++.+-.-
T Consensus 205 lld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~ 246 (366)
T COG3490 205 LLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYR 246 (366)
T ss_pred EEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEee
Confidence 222111111111112222344456789999999887766443
No 369
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.015 Score=56.76 Aligned_cols=98 Identities=16% Similarity=0.225 Sum_probs=70.3
Q ss_pred CEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe-ecCeEEEEEccCCC
Q 015290 281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDS 359 (409)
Q Consensus 281 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg-~~~~v~iwd~~~~~ 359 (409)
-.++.|+..|.+-..|++.+ ++. -....+. .++|++++|+.+|..++.| ++|.|.+||... +
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n-L~~---~~~ne~v------------~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~ 162 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN-LGP---LHQNERV------------QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-A 162 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc-cch---hhcCCcc------------CCcceeeEecCCCceeccccCCCcEEEEEccC-C
Confidence 57888888899988888764 210 0111100 4689999999999999999 469999999986 7
Q ss_pred cceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290 360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD 407 (409)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~ 407 (409)
++++.+..+..+.. +|..+.+..++..+.++...|.
T Consensus 163 k~l~~i~e~~ap~t------------~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 163 KILKVITEHGAPVT------------GVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred cceeeeeecCCccc------------eEEEEEEeCCCcEEEEccCCCc
Confidence 88888887776542 2245666667777777766663
No 370
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.43 E-value=0.28 Score=41.49 Aligned_cols=154 Identities=12% Similarity=0.063 Sum_probs=84.7
Q ss_pred ceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEe-
Q 015290 220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD- 296 (409)
Q Consensus 220 ~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd- 296 (409)
.+.+.+++++++.++.. .++.-.||-....+..... .. ...+....|++++ .+.+....+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-------~~--g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-------LT--GGSLTRPSWDPDG-WVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-------cc--CCccccccccCCC-CEEEEEcCCCceEEEEe
Confidence 67889999999877764 3555555554422332222 12 2367788999998 7777766666666663
Q ss_pred CCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee----cCeEEEEEccCCCcc-eEEEecccCc
Q 015290 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDIRMDSTP-VATFKIHEHL 371 (409)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~----~~~v~iwd~~~~~~~-~~~~~~~~~~ 371 (409)
...+......+..... ...|..+.+||||..+|... ++.|.+--+..+..- ...+......
T Consensus 95 ~~~g~~~~~~v~~~~~--------------~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~ 160 (253)
T PF10647_consen 95 SASGTGEPVEVDWPGL--------------RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRV 160 (253)
T ss_pred cCCCcceeEEeccccc--------------CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEe
Confidence 3333221100111111 12799999999998877543 377777765432111 1111100000
Q ss_pred ccccccccCCCCccceeeEEEcCCCCeEEEcccC
Q 015290 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYR 405 (409)
Q Consensus 372 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~d 405 (409)
.. .....+.+++|.+++.+++.+...
T Consensus 161 ~~--------~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 161 AP--------PLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred cc--------cccCcceeeeecCCCEEEEEeCCC
Confidence 00 001123699999999887765544
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.27 E-value=0.66 Score=44.49 Aligned_cols=126 Identities=10% Similarity=0.095 Sum_probs=64.5
Q ss_pred eeEEEeCCCCCeEEEe-cC-CeEEEEEccCCCceeeeeecCCCcCc-CccCceEEEEEeCCCCCEEEEEeCCCeEEE---
Q 015290 221 INSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRL--- 294 (409)
Q Consensus 221 v~~l~~~~~~~~l~~~-~d-~~i~lwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~i~i--- 294 (409)
...-.|+|+|+.+++. .. ..+++.+.. ....+..+.+...... .....|.++.|+||| ..++... ++.|.+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~-~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~V 475 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDP-ATGQLARTPVDASAVASRVPGPISELQLSRDG-VRAAMII-GGKVYLAVV 475 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccC-CCceEEEEeccCchhhhccCCCcCeEEECCCC-CEEEEEE-CCEEEEEEE
Confidence 5667899998888876 33 233343332 1222222222211111 234579999999999 7666654 466666
Q ss_pred EeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcc
Q 015290 295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTP 361 (409)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~ 361 (409)
-....+.........+. .+-...+.++.|.+++.+++...++...+|-+..++..
T Consensus 476 vr~~~G~~~l~~~~~l~------------~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 476 EQTEDGQYALTNPREVG------------PGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN 530 (591)
T ss_pred EeCCCCceeecccEEee------------cccCCccccceEecCCEEEEEecCCCCceEEEecCCcc
Confidence 33333321100000011 11123457899999998664433333445555443443
No 372
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.14 E-value=0.95 Score=40.70 Aligned_cols=119 Identities=12% Similarity=0.135 Sum_probs=53.0
Q ss_pred cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEe--CCCCCEEEEEeCCCeEEEE-eCCCcccccccccccccc
Q 015290 237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRGFVRLV-DMRQSALCDHSARILRDA 313 (409)
Q Consensus 237 ~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~s~s~dg~i~iw-d~~~~~~~~~~~~~~~~~ 313 (409)
...++.+||+. .++.++++++.. .......+.|. |+...=|+.+.....|..| ....++... .++.+..
T Consensus 220 yG~~l~vWD~~-~r~~~Q~idLg~-----~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a--~kVi~ip 291 (461)
T PF05694_consen 220 YGHSLHVWDWS-TRKLLQTIDLGE-----EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAA--EKVIDIP 291 (461)
T ss_dssp S--EEEEEETT-TTEEEEEEES-T-----TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEE--EEEEEE-
T ss_pred ccCeEEEEECC-CCcEeeEEecCC-----CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeee--eEEEECC
Confidence 45689999999 788888876442 22335567775 3331223333334444444 323332111 1111110
Q ss_pred c------cccCCcccccccccceeeeEeccCCCEEEEee--cCeEEEEEccCCCcceE
Q 015290 314 A------ESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVA 363 (409)
Q Consensus 314 ~------~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~--~~~v~iwd~~~~~~~~~ 363 (409)
. .-|.....|..-..-|+.+.+|.|.++|...+ .|.|+.||+....++..
T Consensus 292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl 349 (461)
T PF05694_consen 292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKL 349 (461)
T ss_dssp -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EE
T ss_pred CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcE
Confidence 0 00011111222235689999999999999886 39999999975444433
No 373
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=0.044 Score=53.77 Aligned_cols=104 Identities=14% Similarity=0.212 Sum_probs=67.1
Q ss_pred CCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccc
Q 015290 229 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA 307 (409)
Q Consensus 229 ~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 307 (409)
.+..++.| ..|.+...|+..+-..... -..-.++|++++|+.+| ..++.|-.+|.|.+||+..++. +
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~-------ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k~----l 165 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQ-------NERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAKI----L 165 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhc-------CCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCcc----e
Confidence 35567778 8888888888722111111 22335789999999999 9999999999999999998765 3
Q ss_pred ccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEcc
Q 015290 308 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIR 356 (409)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~ 356 (409)
+.+..|. .| ...+..+.+..++..+.+++. |. +|.+.
T Consensus 166 ~~i~e~~-ap---------~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 166 KVITEHG-AP---------VTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eeeeecC-Cc---------cceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 4444321 00 123444555555566666654 54 66554
No 374
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.90 E-value=0.34 Score=46.14 Aligned_cols=117 Identities=15% Similarity=0.086 Sum_probs=70.7
Q ss_pred eeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEe--CCCCCEEEEEeCCCeEEEEeC
Q 015290 221 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRGFVRLVDM 297 (409)
Q Consensus 221 v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~s~s~dg~i~iwd~ 297 (409)
+.-+.-+.-++..++. ....+.|||.+ .+..... ..+ ...+.|.++.|. |++ +.+++.+..+.|.+|--
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~-~~~lE~~-----~~f-~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTR-SGVLEYE-----ESF-SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQ 103 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcC-CcEEEEe-----eee-cCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEc
Confidence 3444445545544445 66789999998 4442221 112 346788999986 777 88888888889998853
Q ss_pred C-----CccccccccccccccccccCCcccccccc-cceeeeEeccCCCEEEEeecCeEEEEEccC
Q 015290 298 R-----QSALCDHSARILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSRDYMNLKLWDIRM 357 (409)
Q Consensus 298 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~ 357 (409)
. +.......++.+.. ..|+ .+|.+..|.++|.++ .|+.+.+.|+|-..
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i-----------~~~T~h~Igds~Wl~~G~Lv-V~sGNqlfv~dk~~ 157 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDI-----------SSHTPHPIGDSIWLKDGTLV-VGSGNQLFVFDKWL 157 (631)
T ss_pred cchhhhcCCcccceeEEEEe-----------ecCCCCCccceeEecCCeEE-EEeCCEEEEECCCc
Confidence 2 11111111222211 1222 478999999998555 44458899998643
No 375
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.88 E-value=1 Score=38.75 Aligned_cols=125 Identities=11% Similarity=0.064 Sum_probs=69.2
Q ss_pred ceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeee--cCCC----cCcCccCceEEEE--EeCCCCCEEEEEeCCCe
Q 015290 220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVD--MKPS----NMDDLTEVITSAE--FHPIYCNLLAYSSSRGF 291 (409)
Q Consensus 220 ~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~--~~~~----~~~~~~~~v~~~~--~~p~~~~~l~s~s~dg~ 291 (409)
.|..+...|+-+.|++-.|+.+.++++..-......-. .... ........+...+ -...+...|+. .....
T Consensus 37 ~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~v-a~kk~ 115 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCV-AVKKK 115 (275)
T ss_pred eEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEE-EECCE
Confidence 38889998887777766779999999873221110000 0000 0011122333333 11333134444 44558
Q ss_pred EEEEeCCCccccc-cccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcce
Q 015290 292 VRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPV 362 (409)
Q Consensus 292 i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~ 362 (409)
|.+|......... ...+.+.. ...+..++|. ++.|+.|..+...+.|+.+ +...
T Consensus 116 i~i~~~~~~~~~f~~~~ke~~l--------------p~~~~~i~~~--~~~i~v~~~~~f~~idl~~-~~~~ 170 (275)
T PF00780_consen 116 ILIYEWNDPRNSFSKLLKEISL--------------PDPPSSIAFL--GNKICVGTSKGFYLIDLNT-GSPS 170 (275)
T ss_pred EEEEEEECCcccccceeEEEEc--------------CCCcEEEEEe--CCEEEEEeCCceEEEecCC-CCce
Confidence 9998877642221 22233333 3568888888 5678888777788899874 4443
No 376
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.87 E-value=1 Score=38.72 Aligned_cols=221 Identities=8% Similarity=0.033 Sum_probs=106.6
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeecc-CCCccc-cccccc-ccccCcee-ccCCCCCceeeccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM-DHFPFV-SSENTL-LAEKNFMN-EHNPPSFAHGYHLE 189 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~-~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~ 189 (409)
..|..+... ++-+.|++-+ |+.+.++++..-........ ...... ...... ......+. .........+..+.
T Consensus 36 ~~I~ql~vl--~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~ 112 (275)
T PF00780_consen 36 SSITQLSVL--PELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV 112 (275)
T ss_pred ceEEEEEEe--cccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE
Confidence 358888885 4444555444 49999999875433321100 000000 000000 00111111 11112222222222
Q ss_pred ccccceeEEEecCCcc-cc-eeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCc-----
Q 015290 190 WTENMATKIANVGNSV-HA-RCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN----- 262 (409)
Q Consensus 190 ~~~~~~i~~~~~~~~~-~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~----- 262 (409)
...+.+|...... .. ...+.+ .-...+.+++|. ++.++.|......+.|+. ++......+.....
T Consensus 113 ---kk~i~i~~~~~~~~~f~~~~ke~--~lp~~~~~i~~~--~~~i~v~~~~~f~~idl~-~~~~~~l~~~~~~~~~~~~ 184 (275)
T PF00780_consen 113 ---KKKILIYEWNDPRNSFSKLLKEI--SLPDPPSSIAFL--GNKICVGTSKGFYLIDLN-TGSPSELLDPSDSSSSFKS 184 (275)
T ss_pred ---CCEEEEEEEECCcccccceeEEE--EcCCCcEEEEEe--CCEEEEEeCCceEEEecC-CCCceEEeCccCCcchhhh
Confidence 3367777766532 22 333433 234677888888 667888844558889988 55544443222111
Q ss_pred CcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEE
Q 015290 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (409)
Q Consensus 263 ~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 342 (409)
......++..+... ++ .+|++- +..-.+.|. .|+......-.|.. ...++++. ..||
T Consensus 185 ~~~~~~~~~~~~~~-~~-e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~----------------~p~~~~~~--~pyl 241 (275)
T PF00780_consen 185 RNSSSKPLGIFQLS-DN-EFLLCY--DNIGVFVNK-NGEPSRKSTIQWSS----------------APQSVAYS--SPYL 241 (275)
T ss_pred cccCCCceEEEEeC-Cc-eEEEEe--cceEEEEcC-CCCcCcccEEEcCC----------------chhEEEEE--CCEE
Confidence 00111233333333 34 555543 333333443 33221111112222 45556664 4588
Q ss_pred EEeecCeEEEEEccCCCcceEEEeccc
Q 015290 343 LSRDYMNLKLWDIRMDSTPVATFKIHE 369 (409)
Q Consensus 343 ~sg~~~~v~iwd~~~~~~~~~~~~~~~ 369 (409)
++..++.|.||++.+ +++++.+....
T Consensus 242 i~~~~~~iEV~~~~~-~~lvQ~i~~~~ 267 (275)
T PF00780_consen 242 IAFSSNSIEVRSLET-GELVQTIPLPN 267 (275)
T ss_pred EEECCCEEEEEECcC-CcEEEEEECCC
Confidence 888778899999986 88888887443
No 377
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.82 E-value=0.33 Score=39.38 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=35.7
Q ss_pred EEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeC
Q 015290 223 SISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP 277 (409)
Q Consensus 223 ~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 277 (409)
.+++..+|...++. ..++|...|.. +++.+..+.+ ....+++++|--
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~-tGK~L~eikl-------Pt~qitsccFgG 263 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPT-TGKILLEIKL-------PTPQITSCCFGG 263 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCC-CCcEEEEEEc-------CCCceEEEEecC
Confidence 45567788888888 99999999998 7777766432 256789999963
No 378
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.80 E-value=1 Score=38.17 Aligned_cols=70 Identities=11% Similarity=0.057 Sum_probs=42.3
Q ss_pred ceeEEEeCCCCCeEEEe----cCCeEEEEEccCCCce-eeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCC
Q 015290 220 NINSISNNSDCETFVSA----DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290 (409)
Q Consensus 220 ~v~~l~~~~~~~~l~~~----~d~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg 290 (409)
.|..+.++|||..++.. .++.|.+--+.....- -..+.............+.++.|.+++ .+++.+...+
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~V~~~~~~ 187 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLVVLGRSAG 187 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEEEEeCCCC
Confidence 89999999999988864 3677777655422211 111100101122334678999999998 7666655433
No 379
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.64 E-value=0.39 Score=45.74 Aligned_cols=89 Identities=17% Similarity=0.367 Sum_probs=58.7
Q ss_pred cccceeeehhccCCCCCccccCCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCC
Q 015290 10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP 89 (409)
Q Consensus 10 ~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (409)
....|.....+... -...+-+.-+.-++.-++-+....+.|||...+..
T Consensus 15 ~~~~w~~t~~~~T~--------i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~l----------------------- 63 (631)
T PF12234_consen 15 NKIEWLLTSTFETG--------ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVL----------------------- 63 (631)
T ss_pred CeEEEEEEEEEecC--------CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEE-----------------------
Confidence 44567776655432 22344445555555555544556899999987653
Q ss_pred ceeeeeeecCCCccccccccceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEc
Q 015290 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV 144 (409)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~ 144 (409)
+.-..+..+ +.|.++.|...|+|+.+++.+..+.|.++--
T Consensus 64 --E~~~~f~~~-------------~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 64 --EYEESFSED-------------DPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred --EEeeeecCC-------------CceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 122223222 6899999998899999999999999999854
No 380
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.63 E-value=1.5 Score=40.27 Aligned_cols=114 Identities=12% Similarity=0.149 Sum_probs=66.6
Q ss_pred eeEEEeCCCCCeEEEe--cCC----eEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC-----
Q 015290 221 INSISNNSDCETFVSA--DDL----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR----- 289 (409)
Q Consensus 221 v~~l~~~~~~~~l~~~--~d~----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d----- 289 (409)
+....++|++++++.+ ..| .++++|+. +++.+.-. +..- ....+.|.+++ +.|+....+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~-tg~~l~d~------i~~~--~~~~~~W~~d~-~~~~y~~~~~~~~~ 195 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLE-TGKFLPDG------IENP--KFSSVSWSDDG-KGFFYTRFDEDQRT 195 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETT-TTEEEEEE------EEEE--ESEEEEECTTS-SEEEEEECSTTTSS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECC-CCcCcCCc------cccc--ccceEEEeCCC-CEEEEEEeCccccc
Confidence 3467899999999975 333 59999998 55544321 1111 12349999998 666555432
Q ss_pred ------CeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee----c-CeEEEEEccC
Q 015290 290 ------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y-MNLKLWDIRM 357 (409)
Q Consensus 290 ------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~----~-~~v~iwd~~~ 357 (409)
..|..|.+.+..... ..+++. ... ......+..++|+++|+... + ..+.+.|+..
T Consensus 196 ~~~~~~~~v~~~~~gt~~~~d--~lvfe~-~~~----------~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 196 SDSGYPRQVYRHKLGTPQSED--ELVFEE-PDE----------PFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp -CCGCCEEEEEEETTS-GGG---EEEEC--TTC----------TTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred ccCCCCcEEEEEECCCChHhC--eeEEee-cCC----------CcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 236777776643211 123333 100 11256788999999987532 2 4688888874
No 381
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=95.53 E-value=2 Score=39.60 Aligned_cols=59 Identities=14% Similarity=0.063 Sum_probs=37.4
Q ss_pred cceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCC
Q 015290 219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 278 (409)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 278 (409)
...+.|+|.|++++|++- ..|.|++++.. .+.......++.............|+++|+
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~-~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPE-TGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCC-CCceeeeecCCceeccCCCCceeeEEECCC
Confidence 456889999999877777 47999999865 332222222221101112567889999987
No 382
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.38 E-value=1.4 Score=39.72 Aligned_cols=110 Identities=12% Similarity=0.077 Sum_probs=53.6
Q ss_pred cceeEEEeCCCCCeEEEe-c-----------C-CeEEEEEcc-CCCce--eeeeecCCCcCcCccCceEEEEEeCCCCCE
Q 015290 219 FNINSISNNSDCETFVSA-D-----------D-LRINLWNLE-ISDQC--FNIVDMKPSNMDDLTEVITSAEFHPIYCNL 282 (409)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~-~-----------d-~~i~lwd~~-~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 282 (409)
.....|+|.++|+.+++- . . +.|.+++-. ..+.. ..+ +...-.....+++.+++ +
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~v-------fa~~l~~p~Gi~~~~~G--l 84 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNV-------FAEELSMVTGLAVAVGG--V 84 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEE-------eecCCCCccceeEecCC--E
Confidence 345789999999887763 1 1 266666543 11221 122 22222345789999886 3
Q ss_pred EEEEeCCCeEEEEeCCCccccc-cccccccccccccCCcccccccccceeeeEeccCCCEEEE
Q 015290 283 LAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (409)
Q Consensus 283 l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s 344 (409)
++ ++.....++.|........ ....++.. ... . ...+......++|.|||.+.++
T Consensus 85 yV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~--~~~--~--~~~~~~~~~~l~~gpDG~LYv~ 140 (367)
T TIGR02604 85 YV-ATPPDILFLRDKDGDDKADGEREVLLSG--FGG--Q--INNHHHSLNSLAWGPDGWLYFN 140 (367)
T ss_pred EE-eCCCeEEEEeCCCCCCCCCCccEEEEEc--cCC--C--CCcccccccCceECCCCCEEEe
Confidence 33 3444433344543321111 00011111 000 0 0001245778999999986654
No 383
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.37 E-value=1.7 Score=37.74 Aligned_cols=117 Identities=13% Similarity=0.096 Sum_probs=60.6
Q ss_pred cccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEe
Q 015290 217 HDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (409)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd 296 (409)
-...|..|.|.|++...+.+..|.|++=+.......... .......-.-.+..++|.+++ ...++|+.. .+ +..
T Consensus 185 ~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~---~~~~~~~~~~~~ld~a~~~~~-~~wa~gg~G-~l-~~S 258 (302)
T PF14870_consen 185 SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSE---PIIPIKTNGYGILDLAYRPPN-EIWAVGGSG-TL-LVS 258 (302)
T ss_dssp SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE------B-TTSS--S-EEEEEESSSS--EEEEESTT--E-EEE
T ss_pred ccceehhceecCCCCEEEEeCCcEEEEccCCCCcccccc---ccCCcccCceeeEEEEecCCC-CEEEEeCCc-cE-EEe
Confidence 456789999999988777668888888772211221111 100111223347899999987 777766654 33 334
Q ss_pred CCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEE
Q 015290 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW 353 (409)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iw 353 (409)
...++ .|+..... ..-...+..+.|.++.+-++.|.+|.|--|
T Consensus 259 ~DgGk-------tW~~~~~~-------~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 259 TDGGK-------TWQKDRVG-------ENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp SSTTS-------S-EE-GGG-------TTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred CCCCc-------cceECccc-------cCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 44443 22220000 000246788999888888888888877554
No 384
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.22 E-value=0.1 Score=41.96 Aligned_cols=61 Identities=13% Similarity=0.104 Sum_probs=33.6
Q ss_pred CCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCcc-CceEEEEEeCCCCCEEEEE--eCCCeEEEEeCC
Q 015290 229 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EVITSAEFHPIYCNLLAYS--SSRGFVRLVDMR 298 (409)
Q Consensus 229 ~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~s~--s~dg~i~iwd~~ 298 (409)
++.+..++ .||.|+.|++. ..+.+.. ...|. ..+..+..+..+ ..++.+ |.|..++.|++.
T Consensus 113 ~~~~~c~~~~dg~ir~~n~~-p~k~~g~-------~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 113 DSSLGCVGAQDGRIRACNIK-PNKVLGY-------VGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccceeEEeccCCceeeeccc-cCceeee-------eccccCCCcceeEEecCC-ceEEeeccccchhhhhcchh
Confidence 34566777 99999999998 5554443 23344 233333333333 444444 455555555544
No 385
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.21 E-value=0.94 Score=44.40 Aligned_cols=95 Identities=18% Similarity=0.295 Sum_probs=54.5
Q ss_pred CceEEEEEeCCCCCEEEEEeCCCeEEEEeCCC--cc---ccccccccccccccccCCcccc-cccccceeeeEeccCC--
Q 015290 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ--SA---LCDHSARILRDAAESHGSKSFF-TEIIASISDIKFANDG-- 339 (409)
Q Consensus 268 ~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~--~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~g-- 339 (409)
..|..+.++|+| .+++..|..|. .|-.+.. +. ..... ....+ ..-+.....| ..+...|..+.|+|.+
T Consensus 85 f~v~~i~~n~~g-~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~-~~i~C-rt~~v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 85 FEVHQISLNPTG-SLLALVGPRGV-VVLELPRRWGKNGEFEDGK-KEINC-RTVPVDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred eeEEEEEECCCC-CEEEEEcCCcE-EEEEeccccCccccccCCC-cceeE-EEEEechhhccCCCCceEEEEEEcCCCCC
Confidence 468899999999 88888887764 4444422 10 00000 00111 0000011112 2335689999999974
Q ss_pred -CEEEE-eecCeEEEEEccCCCcceEEEe
Q 015290 340 -QHLLS-RDYMNLKLWDIRMDSTPVATFK 366 (409)
Q Consensus 340 -~~l~s-g~~~~v~iwd~~~~~~~~~~~~ 366 (409)
..|+. .+|+++|+||+.....+..++.
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 55555 4679999999976455555554
No 386
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.21 E-value=0.089 Score=42.32 Aligned_cols=64 Identities=13% Similarity=0.115 Sum_probs=40.3
Q ss_pred CCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCce-EEEEEeCCCCCEEEEEeCCCeEEEEeCCCcc
Q 015290 230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI-TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA 301 (409)
Q Consensus 230 ~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~ 301 (409)
+..+++| .+|.|.+|.....+.....+ ......| ..+.--.++ .+..+++.||.|+.|++.-++
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~-------~s~~e~i~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k 135 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV-------CSGEESIDLGIPNGRDS-SLGCVGAQDGRIRACNIKPNK 135 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhh-------hcccccceecccccccc-ceeEEeccCCceeeeccccCc
Confidence 5678888 99999999887334333221 1111222 222222333 588899999999999987654
No 387
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.17 E-value=2 Score=37.52 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=39.4
Q ss_pred eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCC-EEEEee--cCeEEEEEccCCCcceEEEec
Q 015290 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD--YMNLKLWDIRMDSTPVATFKI 367 (409)
Q Consensus 291 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~sg~--~~~v~iwd~~~~~~~~~~~~~ 367 (409)
.|-++|+.+++. +..+.. ..++.++..+.+.+ +|.+.+ ++.|.+||..+ ++.+..+..
T Consensus 270 eVWv~D~~t~kr----v~Ri~l--------------~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t-Gk~~~~~~~ 330 (342)
T PF06433_consen 270 EVWVYDLKTHKR----VARIPL--------------EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT-GKLVRSIEQ 330 (342)
T ss_dssp EEEEEETTTTEE----EEEEEE--------------EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT---EEEEE--
T ss_pred EEEEEECCCCeE----EEEEeC--------------CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC-CcEEeehhc
Confidence 477778877653 234443 34688999999886 554433 48999999997 888888875
Q ss_pred ccC
Q 015290 368 HEH 370 (409)
Q Consensus 368 ~~~ 370 (409)
-..
T Consensus 331 lG~ 333 (342)
T PF06433_consen 331 LGE 333 (342)
T ss_dssp -SS
T ss_pred cCC
Confidence 444
No 388
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.10 E-value=0.51 Score=38.94 Aligned_cols=100 Identities=20% Similarity=0.166 Sum_probs=68.7
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEE
Q 015290 274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKL 352 (409)
Q Consensus 274 ~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~i 352 (409)
...++...+++.|+..+.+.--|..+++..... ++. ..+.+-+.- -|.+++.|.. |.+++
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~--ilg----------------~RiE~sa~v-vgdfVV~GCy~g~lYf 77 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEA--ILG----------------VRIECSAIV-VGDFVVLGCYSGGLYF 77 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEeeh--hhC----------------ceeeeeeEE-ECCEEEEEEccCcEEE
Confidence 344554478889999999999999998753221 111 123222222 4678888986 99999
Q ss_pred EEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCCC
Q 015290 353 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRDN 408 (409)
Q Consensus 353 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~i 408 (409)
.+.++ |.....+..-+... ......+++..+..|++|++.
T Consensus 78 l~~~t-Gs~~w~f~~~~~vk---------------~~a~~d~~~glIycgshd~~~ 117 (354)
T KOG4649|consen 78 LCVKT-GSQIWNFVILETVK---------------VRAQCDFDGGLIYCGSHDGNF 117 (354)
T ss_pred EEecc-hhheeeeeehhhhc---------------cceEEcCCCceEEEecCCCcE
Confidence 99987 76666665544432 356778899999999999863
No 389
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.07 E-value=0.13 Score=29.34 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=24.0
Q ss_pred ceeeeEeccCC---CEEEEeec-CeEEEEEccC
Q 015290 329 SISDIKFANDG---QHLLSRDY-MNLKLWDIRM 357 (409)
Q Consensus 329 ~i~~~~~s~~g---~~l~sg~~-~~v~iwd~~~ 357 (409)
.+.++.|||+. .+|+...+ +.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 58899999854 48887777 9999999984
No 390
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.92 E-value=0.21 Score=41.12 Aligned_cols=79 Identities=9% Similarity=0.072 Sum_probs=52.3
Q ss_pred EeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEE
Q 015290 275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD 354 (409)
Q Consensus 275 ~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd 354 (409)
+..++ ++|++...+|.+++||+.+++.......+...=...+ ... ......|..+.++.+|.-|++-++|..+.|+
T Consensus 18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~-~~~--~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~ 93 (219)
T PF07569_consen 18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP-VSD--KSSSPNITSCSLTSNGVPIVTLSNGDSYSYS 93 (219)
T ss_pred EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc-ccc--CCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence 44556 8899999999999999999765332211111100000 000 0234678999999999988888888899999
Q ss_pred ccC
Q 015290 355 IRM 357 (409)
Q Consensus 355 ~~~ 357 (409)
.+.
T Consensus 94 ~~L 96 (219)
T PF07569_consen 94 PDL 96 (219)
T ss_pred ccc
Confidence 874
No 391
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.90 E-value=0.13 Score=29.28 Aligned_cols=32 Identities=31% Similarity=0.547 Sum_probs=26.7
Q ss_pred CceEEEEEeCCCC--CEEEEEeCCCeEEEEeCCC
Q 015290 268 EVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQ 299 (409)
Q Consensus 268 ~~v~~~~~~p~~~--~~l~s~s~dg~i~iwd~~~ 299 (409)
+.+.++.|+|... .+|+.+-.-|.+.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3588999998763 5888888889999999995
No 392
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.81 E-value=0.67 Score=46.36 Aligned_cols=153 Identities=11% Similarity=0.006 Sum_probs=89.9
Q ss_pred cceeEEEeCCCCCeEEE--e-cCCeEEEEEccCCCcee--eeeecCCC-cCcCccCceEEEEEeCCCCCEEEEEeCCCeE
Q 015290 219 FNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCF--NIVDMKPS-NMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 292 (409)
Q Consensus 219 ~~v~~l~~~~~~~~l~~--~-~d~~i~lwd~~~~~~~~--~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i 292 (409)
.++..+...+|+...++ . .+-.|..||++.-.... ....++.. ..........++.|+|.-+...+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 34555666677655544 3 55578889987211111 00000000 0111234456788998876677778889988
Q ss_pred EEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCc
Q 015290 293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHL 371 (409)
Q Consensus 293 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~ 371 (409)
++.-+...... ...+.. ....++++|+|.|+.++.|.. |++.-|... .+....+......
T Consensus 181 ~V~~~~~~~~~---v~s~p~--------------t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~--leik~~ip~Pp~~ 241 (1405)
T KOG3630|consen 181 RVKSTKQLAQN---VTSFPV--------------TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS--LEIKSEIPEPPVE 241 (1405)
T ss_pred hhhhhhhhhhh---hcccCc--------------ccceeeEEeccccceeeEecCCCeEEEeecc--cceeecccCCCcC
Confidence 88766542211 111222 357899999999999999976 999888865 3444444332221
Q ss_pred ccccccccCCCCccceeeEEEcCCCCeEEE
Q 015290 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (409)
Q Consensus 372 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~s 401 (409)
+ .+.|.+++|-..-.+|++
T Consensus 242 --------e---~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 242 --------E---NYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred --------C---CcceeEEEEecceeEEEE
Confidence 1 234478999877766664
No 393
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.69 E-value=0.9 Score=41.52 Aligned_cols=68 Identities=12% Similarity=0.163 Sum_probs=49.2
Q ss_pred ceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCC
Q 015290 220 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (409)
Q Consensus 220 ~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~ 298 (409)
...|.+-..+| ++++| .+|.|++||-- ....... +++...+|..+..+.+| ++++.. .+..+.+.++.
T Consensus 432 nFsc~aTT~sG-~IvvgS~~GdIRLYdri-~~~AKTA-------lPgLG~~I~hVdvtadG-Kwil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 432 NFSCFATTESG-YIVVGSLKGDIRLYDRI-GRRAKTA-------LPGLGDAIKHVDVTADG-KWILAT-CKTYLLLIDTL 500 (644)
T ss_pred ccceeeecCCc-eEEEeecCCcEEeehhh-hhhhhhc-------ccccCCceeeEEeeccC-cEEEEe-cccEEEEEEEe
Confidence 45667666666 67777 99999999974 3333322 78889999999999999 766644 35667777654
No 394
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.66 E-value=0.8 Score=42.52 Aligned_cols=146 Identities=10% Similarity=-0.006 Sum_probs=77.9
Q ss_pred cceeEEEeCCCCCeEEEe---cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCC---CEEEEEeCCCeE
Q 015290 219 FNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC---NLLAYSSSRGFV 292 (409)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~---~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~s~s~dg~i 292 (409)
.++..++|....+.+++. .+|.+++=|-. ..+.-..|..+.|.|-+. ..|++......|
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds~---------------viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhV 84 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDSK---------------VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHV 84 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCcc---------------EeeccceeeeeeecCcccCCCCceEEEeccceE
Confidence 357788997433344454 35555544332 122234688999998641 244555677889
Q ss_pred EEEeCCCcccc-ccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccC
Q 015290 293 RLVDMRQSALC-DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEH 370 (409)
Q Consensus 293 ~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~ 370 (409)
.+|.+...... .+......++-..+ | .---..+.|+|....|+.-.. ..=.+++++.+...++.--...+
T Consensus 85 tVWqL~~s~~e~~K~l~sQtcEi~e~-----~---pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G 156 (671)
T PF15390_consen 85 TVWQLCPSTTERNKLLMSQTCEIREP-----F---PVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSG 156 (671)
T ss_pred EEEEeccCccccccceeeeeeeccCC-----c---ccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCc
Confidence 99987632110 00000000100000 0 011246789999888886554 33345666543433332222333
Q ss_pred cccccccccCCCCccceeeEEEcCCCCeEEEc
Q 015290 371 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402 (409)
Q Consensus 371 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~ 402 (409)
.+ .+.+|.+||++|+.+
T Consensus 157 ~I---------------hCACWT~DG~RLVVA 173 (671)
T PF15390_consen 157 LI---------------HCACWTKDGQRLVVA 173 (671)
T ss_pred eE---------------EEEEecCcCCEEEEE
Confidence 33 599999999988754
No 395
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.53 E-value=0.37 Score=48.02 Aligned_cols=61 Identities=5% Similarity=0.028 Sum_probs=42.6
Q ss_pred ccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEE
Q 015290 218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 284 (409)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 284 (409)
....++++|+|.|+.++.| ..|++.-|... .+....+..++ ... ...|.+|+|-... .+++
T Consensus 198 t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~--leik~~ip~Pp--~~e-~yrvl~v~Wl~t~-eflv 259 (1405)
T KOG3630|consen 198 TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS--LEIKSEIPEPP--VEE-NYRVLSVTWLSTQ-EFLV 259 (1405)
T ss_pred ccceeeEEeccccceeeEecCCCeEEEeecc--cceeecccCCC--cCC-CcceeEEEEecce-eEEE
Confidence 3457899999999999999 99999888766 33333332222 111 5789999998765 4444
No 396
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.50 E-value=3.9 Score=37.65 Aligned_cols=242 Identities=14% Similarity=0.159 Sum_probs=117.9
Q ss_pred cEEEEEECCCCCEEEEE-ecCC----eEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccc
Q 015290 34 IVSAIEFDKTGDYLAVG-DRGG----RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (409)
Q Consensus 34 ~v~~v~~~~~~~~la~~-~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (409)
.+..+.++|||+++|.+ +..| .++++|+.+++.. ...+..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l--------------------------~d~i~~--------- 169 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL--------------------------PDGIEN--------- 169 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE--------------------------EEEEEE---------
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc--------------------------CCcccc---------
Confidence 44578999999999866 3334 5999999987631 111111
Q ss_pred cceeccceEEEEEEecCCCCEEEEEeCCC-----------eEEEEEcCCceee--eeeccCCCcccccccccccccC-ce
Q 015290 109 SLEIEEKINRVRWCAAPNGSMFILSTNDK-----------TIKLWKVRDQKVK--KIKEMDHFPFVSSENTLLAEKN-FM 174 (409)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~-----------~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~ 174 (409)
..-..+.| .++++.|+....+. .|+.|++.+.... .++... .... .+
T Consensus 170 -----~~~~~~~W--~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~------------~~~~~~~ 230 (414)
T PF02897_consen 170 -----PKFSSVSW--SDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEP------------DEPFWFV 230 (414)
T ss_dssp -----EESEEEEE--CTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-T------------TCTTSEE
T ss_pred -----cccceEEE--eCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeec------------CCCcEEE
Confidence 11223899 68888776654332 3677777665432 222211 1111 23
Q ss_pred eccCCCCCceeecccc-ccc-ceeEEEecCCc--ccceeeeeeccccccceeEEEeCCCCCeEEEe----cCCeEEEEEc
Q 015290 175 NEHNPPSFAHGYHLEW-TEN-MATKIANVGNS--VHARCQKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNL 246 (409)
Q Consensus 175 ~~~~~~~~~~~~~~~~-~~~-~~i~~~~~~~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~----~d~~i~lwd~ 246 (409)
.+..+.++.++..... ... ..+.+.++... ......... ....+....+... .+.+++.. ..+.|.-.++
T Consensus 231 ~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~-~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l 308 (414)
T PF02897_consen 231 SVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS-PREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDL 308 (414)
T ss_dssp EEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE-ESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEET
T ss_pred EEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe-CCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecc
Confidence 3444455555443322 223 56777777653 111222211 2233333334333 34344432 3567777777
Q ss_pred cCCCc--eeeeeecCCCcCcCccC--ceEEEEEeCCCCCEEEEEeCCC--eEEEEeCC-CccccccccccccccccccCC
Q 015290 247 EISDQ--CFNIVDMKPSNMDDLTE--VITSAEFHPIYCNLLAYSSSRG--FVRLVDMR-QSALCDHSARILRDAAESHGS 319 (409)
Q Consensus 247 ~~~~~--~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~s~s~dg--~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~ 319 (409)
..... .... +..+.. .+..+....+ .+++....++ .|+++|+. ..... .+....
T Consensus 309 ~~~~~~~~~~~-------l~~~~~~~~l~~~~~~~~--~Lvl~~~~~~~~~l~v~~~~~~~~~~--~~~~p~-------- 369 (414)
T PF02897_consen 309 ADPSPAEWWTV-------LIPEDEDVSLEDVSLFKD--YLVLSYRENGSSRLRVYDLDDGKESR--EIPLPE-------- 369 (414)
T ss_dssp TSTSGGGEEEE-------EE--SSSEEEEEEEEETT--EEEEEEEETTEEEEEEEETT-TEEEE--EEESSS--------
T ss_pred cccccccceeE-------EcCCCCceeEEEEEEECC--EEEEEEEECCccEEEEEECCCCcEEe--eecCCc--------
Confidence 73332 1112 333444 3555554433 4555555554 58889988 43221 011111
Q ss_pred cccccccccceeeeEeccCCCEEE-E-ee--c-CeEEEEEccC
Q 015290 320 KSFFTEIIASISDIKFANDGQHLL-S-RD--Y-MNLKLWDIRM 357 (409)
Q Consensus 320 ~~~~~~~~~~i~~~~~s~~g~~l~-s-g~--~-~~v~iwd~~~ 357 (409)
.+.|..+...+++..+. + .+ . .+++.||+.+
T Consensus 370 -------~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t 405 (414)
T PF02897_consen 370 -------AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLAT 405 (414)
T ss_dssp -------SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTT
T ss_pred -------ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 23455565556665433 2 23 2 8899999975
No 397
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.44 E-value=3.6 Score=37.11 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=14.0
Q ss_pred CcEEEEEECCCCCEEEEE
Q 015290 33 DIVSAIEFDKTGDYLAVG 50 (409)
Q Consensus 33 ~~v~~v~~~~~~~~la~~ 50 (409)
.....|+|.++|+++++-
T Consensus 14 ~~P~~ia~d~~G~l~V~e 31 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAE 31 (367)
T ss_pred CCCceeeECCCCCEEEEe
Confidence 345789999999977664
No 398
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.25 E-value=3 Score=35.38 Aligned_cols=176 Identities=13% Similarity=0.143 Sum_probs=102.5
Q ss_pred CCcEEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeee--ecCCCcccccccc
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE--FQSHEPEFDYLKS 109 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~~~~~~~ 109 (409)
...|+++.|+|+.+.|++..+...-.|+=...++. +++ +.+-
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdl---------------------------irtiPL~g~--------- 128 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDL---------------------------IRTIPLTGF--------- 128 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCce---------------------------EEEeccccc---------
Confidence 34599999999988888777666666665444442 222 2221
Q ss_pred ceeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccc
Q 015290 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (409)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (409)
...-.|.| -.++++.++--.++.+.++.+..+........
T Consensus 129 ----~DpE~Iey--ig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~---------------------------------- 168 (316)
T COG3204 129 ----SDPETIEY--IGGNQFVIVDERDRALYLFTVDADTTVISAKV---------------------------------- 168 (316)
T ss_pred ----CChhHeEE--ecCCEEEEEehhcceEEEEEEcCCccEEeccc----------------------------------
Confidence 23446777 36777777778888888887765532221110
Q ss_pred ccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCC--cCcCc
Q 015290 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS--NMDDL 266 (409)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~--~~~~~ 266 (409)
-.+. +... .......-.++|.|..+.|..+ .-.-+.||.+......+..-..... ...-.
T Consensus 169 ----~~i~------------L~~~-~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f 231 (316)
T COG3204 169 ----QKIP------------LGTT-NKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLF 231 (316)
T ss_pred ----eEEe------------cccc-CCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceE
Confidence 0000 1111 1114556789999999999998 7777777777622222221000000 00001
Q ss_pred cCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCc
Q 015290 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 300 (409)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~ 300 (409)
-..+.++.|++....+|+-+..++.+.-.|....
T Consensus 232 ~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 232 VLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 2346788898766467777777787777776653
No 399
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.24 E-value=4.1 Score=36.84 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=31.2
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEeccCCc
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGK 65 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~ 65 (409)
..++|.++.||+|.+.||+--.+.+|.+++....+
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCc
Confidence 56799999999999999999999999999985443
No 400
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.16 E-value=5.2 Score=37.76 Aligned_cols=28 Identities=11% Similarity=-0.092 Sum_probs=23.6
Q ss_pred CEEEEEeCCCeEEEEEcCCceeeeeecc
Q 015290 128 SMFILSTNDKTIKLWKVRDQKVKKIKEM 155 (409)
Q Consensus 128 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 155 (409)
..++.++.++.|.-+|.++++.......
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 5788888899999999999988877654
No 401
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.00 E-value=4.3 Score=36.25 Aligned_cols=116 Identities=14% Similarity=0.126 Sum_probs=49.2
Q ss_pred eeEEEeCCCCCeEEE-e-----cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCC----
Q 015290 221 INSISNNSDCETFVS-A-----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---- 290 (409)
Q Consensus 221 v~~l~~~~~~~~l~~-~-----~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg---- 290 (409)
+..=-|.|||..+.. + .+..|.-+|.. ++....... ......+--+++| ++++-=+.|.
T Consensus 240 ~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~-t~~~~~~~~---------~p~~~H~~ss~Dg-~L~vGDG~d~p~~v 308 (386)
T PF14583_consen 240 VGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD-TGERRRLME---------MPWCSHFMSSPDG-KLFVGDGGDAPVDV 308 (386)
T ss_dssp EEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT-T--EEEEEE---------E-SEEEEEE-TTS-SEEEEEE-------
T ss_pred cccccccCCCCEEEEEeecCCCCceEEEeeCCC-CCCceEEEe---------CCceeeeEEcCCC-CEEEecCCCCCccc
Confidence 344457899987764 2 23355666766 333222211 1123455667888 7776533332
Q ss_pred ------------eEEEEeCCCccccccccccccccccccCCccccccccc-ceeeeEeccCCCEEEEeec--CeEEEEEc
Q 015290 291 ------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SISDIKFANDGQHLLSRDY--MNLKLWDI 355 (409)
Q Consensus 291 ------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~sg~~--~~v~iwd~ 355 (409)
.|.++++..+.. ..+..|..+.. .+.++.. .--...|+|||++|+-.++ |...||=+
T Consensus 309 ~~~~~~~~~~~p~i~~~~~~~~~~-----~~l~~h~~sw~---v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 309 ADAGGYKIENDPWIYLFDVEAGRF-----RKLARHDTSWK---VLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ------------EEEEEETTTTEE-----EEEEE----------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred cccccceecCCcEEEEeccccCce-----eeeeeccCcce---eecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 456677765542 12222211110 0111111 1245799999999987765 66666543
No 402
>PHA02713 hypothetical protein; Provisional
Probab=93.88 E-value=4.6 Score=38.81 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=17.6
Q ss_pred CCCCEEEEEeCCC-----eEEEEEcCCceeee
Q 015290 125 PNGSMFILSTNDK-----TIKLWKVRDQKVKK 151 (409)
Q Consensus 125 ~~~~~l~s~~~d~-----~i~iwd~~~~~~~~ 151 (409)
-+|+..+.||.++ ++..||..++....
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 3666777777653 47778877766544
No 403
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.84 E-value=7.8 Score=38.69 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=23.6
Q ss_pred CcEEEEEECCCCCEEEEEecCCeEEEEeccCC
Q 015290 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGG 64 (409)
Q Consensus 33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~ 64 (409)
..|....|-.|..+|.++..||.+..|-++..
T Consensus 584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~ 615 (1096)
T KOG1897|consen 584 RSILLTTFEGDIHYLLVALGDGALLYFVLDIN 615 (1096)
T ss_pred hheeeEEeeccceEEEEEcCCceEEEEEEEcc
Confidence 34555566667789999999999987766543
No 404
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.53 E-value=3.5 Score=33.71 Aligned_cols=94 Identities=10% Similarity=0.022 Sum_probs=55.1
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEe--CCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe-e
Q 015290 270 ITSAEFHPIYCNLLAYSSSRGFVRLVD--MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D 346 (409)
Q Consensus 270 v~~~~~~p~~~~~l~s~s~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg-~ 346 (409)
-+.++|+.+...+.++-+.+-+|.-|| ..++..... ..++......| +. ....-.++...+|.+.++. +
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr-~~i~dlrk~~~-----~e--~~~PDGm~ID~eG~L~Va~~n 231 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNR-KVIFDLRKSQP-----FE--SLEPDGMTIDTEGNLYVATFN 231 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCc-ceeEEeccCCC-----cC--CCCCCcceEccCCcEEEEEec
Confidence 357889988734444556677787787 555543211 12222200000 00 0112334556678766665 4
Q ss_pred cCeEEEEEccCCCcceEEEecccCcc
Q 015290 347 YMNLKLWDIRMDSTPVATFKIHEHLR 372 (409)
Q Consensus 347 ~~~v~iwd~~~~~~~~~~~~~~~~~~ 372 (409)
.++|...|..+ |+.+..++-....+
T Consensus 232 g~~V~~~dp~t-GK~L~eiklPt~qi 256 (310)
T KOG4499|consen 232 GGTVQKVDPTT-GKILLEIKLPTPQI 256 (310)
T ss_pred CcEEEEECCCC-CcEEEEEEcCCCce
Confidence 49999999987 99999988776655
No 405
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.53 E-value=2.5 Score=38.09 Aligned_cols=143 Identities=8% Similarity=-0.030 Sum_probs=85.5
Q ss_pred eEEEeCCCCCeEEEecCCeEEEEEccCCCcee-eeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCc
Q 015290 222 NSISNNSDCETFVSADDLRINLWNLEISDQCF-NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 300 (409)
Q Consensus 222 ~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~ 300 (409)
+.+-|....+.+++...|.+.-|.....+.-+ -.+ -....++|.++.|++|. +.+|.--.+++|.+++....
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSf------dm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d 98 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISF------DMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPD 98 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCcee------eecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCC
Confidence 34545544444444455666667665222211 111 12245689999999999 99999999999999987443
Q ss_pred cccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecccCcccccccccC
Q 015290 301 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN 380 (409)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (409)
+........... -...|....|+.. .-+|--.+..+.+|......+.+...+.+.-.+
T Consensus 99 ~~~l~~~~~ck~-------------k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nv-------- 156 (657)
T KOG2377|consen 99 NSQLEYTQECKT-------------KNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNV-------- 156 (657)
T ss_pred chhhHHHHHhcc-------------CcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCc--------
Confidence 321100011111 1346888999876 566666666677777654345555555555544
Q ss_pred CCCccceeeEEEcCCCCeEE
Q 015290 381 NDSIFDKFECSVSGDGLHFA 400 (409)
Q Consensus 381 ~~~~~~v~~~~~spdg~~l~ 400 (409)
....|.++-+.+.
T Consensus 157 -------nWy~yc~et~v~L 169 (657)
T KOG2377|consen 157 -------NWYMYCPETAVIL 169 (657)
T ss_pred -------cEEEEccccceEe
Confidence 3678888876533
No 406
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.82 E-value=11 Score=37.33 Aligned_cols=85 Identities=16% Similarity=0.176 Sum_probs=54.4
Q ss_pred cccceeEEEeCCCCCeEEEecCCeEEEEEccCC-C---------c--eeeeeecCCCcC-cCccCceEEEEEeCCC--CC
Q 015290 217 HDFNINSISNNSDCETFVSADDLRINLWNLEIS-D---------Q--CFNIVDMKPSNM-DDLTEVITSAEFHPIY--CN 281 (409)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~-~---------~--~~~~~~~~~~~~-~~~~~~v~~~~~~p~~--~~ 281 (409)
-...|..+.++|+|..++......|.|-.+... + . ..+++.+...-+ ..+...|..+.|+|.+ ..
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 345788999999999998773344444444311 0 1 112222222212 2345678999999984 26
Q ss_pred EEEEEeCCCeEEEEeCCCcc
Q 015290 282 LLAYSSSRGFVRLVDMRQSA 301 (409)
Q Consensus 282 ~l~s~s~dg~i~iwd~~~~~ 301 (409)
.|+.-..|+++|+||+....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 88888899999999997644
No 407
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.79 E-value=2.5 Score=38.41 Aligned_cols=79 Identities=15% Similarity=0.126 Sum_probs=51.9
Q ss_pred cccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEE-EEEeCC--------------
Q 015290 215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS-AEFHPI-------------- 278 (409)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~-------------- 278 (409)
......+.++..+|++++.++. .-|+|.|+|+. .+..+++ +++..+.-.. +.....
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~-~~~vvrm-------WKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~ 375 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVA-RGIVVRM-------WKGYRDAQCGWIEVPEEGDRDRSNSNSPKSS 375 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECC-CChhhhh-------hccCccceEEEEEeecccccccccccccCCC
Confidence 4555668899999999988888 88999999998 6666665 3443322100 000000
Q ss_pred ---CCCEEEEEeCCCeEEEEeCCCcc
Q 015290 279 ---YCNLLAYSSSRGFVRLVDMRQSA 301 (409)
Q Consensus 279 ---~~~~l~s~s~dg~i~iwd~~~~~ 301 (409)
.-.+++.+-..|.|-||.++.+.
T Consensus 376 ~~~~l~LvIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 376 SRFALFLVIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred CcceEEEEEEeccCCeEEEEecCCCC
Confidence 00144556778999999998864
No 408
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=92.72 E-value=9.9 Score=36.63 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCCEEEEEeCC------CeEEEEEcCCceeee
Q 015290 116 INRVRWCAAPNGSMFILSTND------KTIKLWKVRDQKVKK 151 (409)
Q Consensus 116 v~~l~~~~s~~~~~l~s~~~d------~~i~iwd~~~~~~~~ 151 (409)
-.+++. .++...++|+.| .++..||...++...
T Consensus 325 ~~~~~~---~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 325 RVGVAV---LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred cccEEE---ECCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 445555 466788888888 356667777665443
No 409
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.40 E-value=7 Score=34.14 Aligned_cols=83 Identities=16% Similarity=0.040 Sum_probs=50.9
Q ss_pred ccccceeEEEeCCCCCeEEEe--cCCeEEEEEccC-CCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCC-e
Q 015290 216 AHDFNINSISNNSDCETFVSA--DDLRINLWNLEI-SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-F 291 (409)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg-~ 291 (409)
.+-..-+.|+||||++.|+.+ ..+.|.-|++.. ........ ....+....+..-.++...+| ++.+++-.+| .
T Consensus 160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~--~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~~ 236 (307)
T COG3386 160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRR--GFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGGR 236 (307)
T ss_pred CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcc--eEEEccCCCCCCCceEEeCCC-CEEEecccCCce
Confidence 334445789999999999888 457787777751 11111000 000022344566678888888 7775554444 8
Q ss_pred EEEEeCCCccc
Q 015290 292 VRLVDMRQSAL 302 (409)
Q Consensus 292 i~iwd~~~~~~ 302 (409)
|.+|+.. +++
T Consensus 237 v~~~~pd-G~l 246 (307)
T COG3386 237 VVRFNPD-GKL 246 (307)
T ss_pred EEEECCC-CcE
Confidence 9999988 543
No 410
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.36 E-value=2.8 Score=37.19 Aligned_cols=56 Identities=20% Similarity=0.199 Sum_probs=35.3
Q ss_pred ceeEEEeCCCCCeEEEecCCeEEEEEccCCCce-eeeeecCCCcCcCccCceEEEEEeCC
Q 015290 220 NINSISNNSDCETFVSADDLRINLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPI 278 (409)
Q Consensus 220 ~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~ 278 (409)
..+.|+|.|+|+.+++-..|.|++++.. +.. .....+. ............++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~--g~~~~~v~~~~-~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKD--GSLKTPVADLP-EVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETT--TEECEEEEE-T-TTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCC--CcCcceecccc-cccccccCCcccceeccc
Confidence 3578999999877665599999999943 332 2222221 112334557899999994
No 411
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=92.25 E-value=7.5 Score=34.11 Aligned_cols=241 Identities=11% Similarity=0.059 Sum_probs=118.1
Q ss_pred EEEEecCCCCEEEEEe----------CCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecc
Q 015290 119 VRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (409)
Q Consensus 119 l~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (409)
+.. +|+++.+++++ ..-.|.+||..+-.......+...+....+ ...-....+.++.+++..
T Consensus 41 ~~~--spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~------~~~~~~~ls~dgk~~~V~ 112 (342)
T PF06433_consen 41 VAL--SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV------PYKNMFALSADGKFLYVQ 112 (342)
T ss_dssp EEE---TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--------GGGEEE-TTSSEEEEE
T ss_pred eeE--CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec------ccccceEEccCCcEEEEE
Confidence 445 78999888753 344699999998876665544332111100 001111224455666666
Q ss_pred cccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCC-CeEEE-ecCCeEEEEEccCCCceeeeeecCCCcCcCc
Q 015290 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVS-ADDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (409)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~-~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (409)
++.+...|.+-|++... .+..+ .-.+ |.-.-|.+ +.+.+ |.||.+.-..+...++...... + -+..-
T Consensus 113 N~TPa~SVtVVDl~~~k---vv~ei--~~PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t-~--~F~~~ 181 (342)
T PF06433_consen 113 NFTPATSVTVVDLAAKK---VVGEI--DTPG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST-K--VFDPD 181 (342)
T ss_dssp EESSSEEEEEEETTTTE---EEEEE--EGTS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEE-E--ESSTT
T ss_pred ccCCCCeEEEEECCCCc---eeeee--cCCC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeec-c--ccCCC
Confidence 66666778888876532 22221 0111 11122221 23444 4888888888875555442210 0 12222
Q ss_pred cCc-eEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290 267 TEV-ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (409)
Q Consensus 267 ~~~-v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg 345 (409)
..+ +..-++...+ ..++--+.+|.|+--|+....... ...+..-.... ....+. .+.-.-+++++..+.|...
T Consensus 182 ~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~--~~~~~~~t~~e-~~~~Wr--PGG~Q~~A~~~~~~rlyvL 255 (342)
T PF06433_consen 182 DDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKF--GKPWSLLTDAE-KADGWR--PGGWQLIAYHAASGRLYVL 255 (342)
T ss_dssp TS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEE--EEEEESS-HHH-HHTTEE--E-SSS-EEEETTTTEEEEE
T ss_pred CcccccccceECCC-CeEEEEecCCEEEEEeccCCcccc--cCcccccCccc-cccCcC--CcceeeeeeccccCeEEEE
Confidence 222 2234455555 556667889999888887654211 11111100000 000000 1234457777765544431
Q ss_pred -------e--c--CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCC-eEEE
Q 015290 346 -------D--Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFAT 401 (409)
Q Consensus 346 -------~--~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~s 401 (409)
+ + ..|-++|+.+ ++.+..+...... .+++.+.|.+ +|.+
T Consensus 256 Mh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l~~~~----------------~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 256 MHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPLEHPI----------------DSIAVSQDDKPLLYA 306 (342)
T ss_dssp EEE--TT-TTS-EEEEEEEETTT-TEEEEEEEEEEEE----------------SEEEEESSSS-EEEE
T ss_pred ecCCCCCCccCCceEEEEEECCC-CeEEEEEeCCCcc----------------ceEEEccCCCcEEEE
Confidence 1 1 2577788876 7888887743332 3788888766 5543
No 412
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.01 E-value=5.1 Score=36.81 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=65.8
Q ss_pred eEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccc
Q 015290 232 TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL 310 (409)
Q Consensus 232 ~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 310 (409)
.-+.| .+..|.-.|.+..+..+.+...+. +. ......+..-...| ++|.+|..|-|++||.-..+- +.
T Consensus 529 qtlvGlS~~svFrIDPR~~gNKi~v~esKd--Y~-tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rA-----Kt- 597 (776)
T COG5167 529 QTLVGLSDYSVFRIDPRARGNKIKVVESKD--YK-TKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRA-----KT- 597 (776)
T ss_pred ceEEeecccceEEecccccCCceeeeeehh--cc-ccccccccccccCc--eEEEecCCCceeeehhhcchh-----hh-
Confidence 34456 788887788876665555433222 11 11223344444444 899999999999999543221 11
Q ss_pred cccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEcc
Q 015290 311 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 356 (409)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~ 356 (409)
.+.+-...|..+..+.+|+++++.+...+-+-|++
T Consensus 598 -----------alP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 598 -----------ALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred -----------cCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 11222457889999999999988887888888875
No 413
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.92 E-value=0.034 Score=49.78 Aligned_cols=143 Identities=10% Similarity=0.044 Sum_probs=93.6
Q ss_pred ceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCC
Q 015290 220 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (409)
Q Consensus 220 ~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~ 298 (409)
......|-|.+..++.+ .+..+..||-. ++.... ....+....++|+.+++..++.+-..+.+.+||+.
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~a--gq~~le--------~n~tg~aldm~wDkegdvlavlAek~~piylwd~n 105 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKA--GQVILE--------LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVN 105 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhh--cceecc--------cCCchhHhhhhhccccchhhhhhhcCCCeeechhh
Confidence 33456678887778887 88889999976 433322 11234456788988886667777788999999998
Q ss_pred CccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEecccCccccccc
Q 015290 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCD 377 (409)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 377 (409)
+... ..++.. . ...-.-+.|++.+..++.|.. +.+.||+..+ .+.......|...+
T Consensus 106 ~eyt-----qqLE~g----------g--~~s~sll~wsKg~~el~ig~~~gn~viynhgt-sR~iiv~Gkh~RRg----- 162 (615)
T KOG2247|consen 106 SEYT-----QQLESG----------G--TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGT-SRRIIVMGKHQRRG----- 162 (615)
T ss_pred hhhH-----HHHhcc----------C--cchHHHHhhccCCccccccccccceEEEeccc-hhhhhhhcccccce-----
Confidence 7532 222220 0 112222789998888998875 9999999876 44444443355543
Q ss_pred ccCCCCccceeeEEEcCCCCeEEEcccCC
Q 015290 378 LYNNDSIFDKFECSVSGDGLHFATGSYRR 406 (409)
Q Consensus 378 ~~~~~~~~~v~~~~~spdg~~l~s~s~dg 406 (409)
++.+|.+.+. .+.++.|.
T Consensus 163 ----------tq~av~lEd~-vil~dcd~ 180 (615)
T KOG2247|consen 163 ----------TQIAVTLEDY-VILCDCDN 180 (615)
T ss_pred ----------eEEEecccce-eeecCcHH
Confidence 5899998875 44555554
No 414
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.39 E-value=9.9 Score=33.76 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=21.7
Q ss_pred cEEEEEECCCCCEEEEEecCCeEEEEe
Q 015290 34 IVSAIEFDKTGDYLAVGDRGGRVILFE 60 (409)
Q Consensus 34 ~v~~v~~~~~~~~la~~~~dg~i~iw~ 60 (409)
.-++|+|.|||++|++ ...|.|++++
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~ 28 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD 28 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe
Confidence 3579999999987664 5699999999
No 415
>PHA02713 hypothetical protein; Provisional
Probab=91.38 E-value=5.1 Score=38.49 Aligned_cols=23 Identities=0% Similarity=-0.025 Sum_probs=17.6
Q ss_pred CCCCEEEEEeCCC--eEEEEeCCCcc
Q 015290 278 IYCNLLAYSSSRG--FVRLVDMRQSA 301 (409)
Q Consensus 278 ~~~~~l~s~s~dg--~i~iwd~~~~~ 301 (409)
++ ++.+.|+.++ .+-.||..+++
T Consensus 512 ~~-~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 512 DN-TIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CC-EEEEEeeecceeehhhcCccccc
Confidence 45 8889999888 67778877754
No 416
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.10 E-value=7.2 Score=31.64 Aligned_cols=118 Identities=12% Similarity=0.113 Sum_probs=66.3
Q ss_pred CeEEEe-cCCeEEEEEccCC-CceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC---C---eEEEE-eCCCcc
Q 015290 231 ETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---G---FVRLV-DMRQSA 301 (409)
Q Consensus 231 ~~l~~~-~d~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d---g---~i~iw-d~~~~~ 301 (409)
+.|+.+ ....|.+|++... .+.+.. +.. -+.|..+.++..| +++++--.+ . .+|+| +.+..+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~-------F~T-v~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~ 99 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCT-------FST-VGRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQK 99 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEE-------Ecc-hhheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhc
Confidence 556555 7888999999822 223333 222 2678999999999 999986432 2 56665 333321
Q ss_pred ccccccc-cccccccccCCccccc--------ccccceeeeEeccCCCEEEEeecCeEEEEEccC
Q 015290 302 LCDHSAR-ILRDAAESHGSKSFFT--------EIIASISDIKFANDGQHLLSRDYMNLKLWDIRM 357 (409)
Q Consensus 302 ~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~ 357 (409)
......+ .+.+|.-.+....... .-..++.+++-.|-.--|+.|+++.+.||.+..
T Consensus 100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~ 164 (215)
T PF14761_consen 100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKY 164 (215)
T ss_pred ccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEE
Confidence 1111111 1112111111111110 123467778888866567777779999998863
No 417
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.59 E-value=0.36 Score=46.87 Aligned_cols=81 Identities=16% Similarity=0.348 Sum_probs=47.5
Q ss_pred cEEEEEECC---CCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 34 IVSAIEFDK---TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 34 ~v~~v~~~~---~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
.+.-|.|.| +.-++..+..+++|++........ ..+++|.....-..-+
T Consensus 182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~----------------------------~l~rsHs~~~~d~a~~ 233 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR----------------------------SLFRSHSQRVTDMAFF 233 (1283)
T ss_pred CcceeeecccccccceeeeccCCCceeEeeechHHH----------------------------HHHHhcCCCcccHHHH
Confidence 334455555 667777888889999887765431 2245565210000000
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcC
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR 145 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~ 145 (409)
+ ..+.-|+=. ||||+.|+.++.||.++.|.+.
T Consensus 234 ~--~g~~~l~~l-SpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 234 A--EGVLKLASL-SPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred h--hchhhheee-CCCCcEEEEeecCCccceeeee
Confidence 0 112222212 7899999999999999999764
No 418
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.45 E-value=1.8 Score=24.31 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=25.0
Q ss_pred cCCCEEEEee-c-CeEEEEEccCCCcceEEEecccCc
Q 015290 337 NDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHL 371 (409)
Q Consensus 337 ~~g~~l~sg~-~-~~v~iwd~~~~~~~~~~~~~~~~~ 371 (409)
|++++|.++. . +.|.++|..+ ++.+..+.....+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~vg~~P 36 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPVGGYP 36 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEECCCCC
Confidence 5788777764 3 9999999975 7777777765444
No 419
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.41 E-value=9.5 Score=31.86 Aligned_cols=64 Identities=14% Similarity=0.220 Sum_probs=43.3
Q ss_pred CCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccceEEEEEEe
Q 015290 44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA 123 (409)
Q Consensus 44 ~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~ 123 (409)
..+++.|+..+.+.--|.+++... .-+.+. .+|.+-+.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~-------------------------We~ilg---------------~RiE~sa~-- 60 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLI-------------------------WEAILG---------------VRIECSAI-- 60 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEE-------------------------eehhhC---------------ceeeeeeE--
Confidence 467788888888888888877641 001111 34444444
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCceee
Q 015290 124 APNGSMFILSTNDKTIKLWKVRDQKVK 150 (409)
Q Consensus 124 s~~~~~l~s~~~d~~i~iwd~~~~~~~ 150 (409)
--|+.++.|...|.+++.+.++|...
T Consensus 61 -vvgdfVV~GCy~g~lYfl~~~tGs~~ 86 (354)
T KOG4649|consen 61 -VVGDFVVLGCYSGGLYFLCVKTGSQI 86 (354)
T ss_pred -EECCEEEEEEccCcEEEEEecchhhe
Confidence 24668999999999999999988543
No 420
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=90.15 E-value=13 Score=33.78 Aligned_cols=35 Identities=9% Similarity=-0.106 Sum_probs=21.1
Q ss_pred ccceeEEEeCCCCCeEEEe--cCCeEEEEEccCCCce
Q 015290 218 DFNINSISNNSDCETFVSA--DDLRINLWNLEISDQC 252 (409)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~--~d~~i~lwd~~~~~~~ 252 (409)
..-|+.+.+|.|.++|..+ ..|.|+.||+.....+
T Consensus 311 P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 311 PPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp ------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred CCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence 3567899999999999876 8999999999854433
No 421
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.13 E-value=16 Score=33.93 Aligned_cols=33 Identities=9% Similarity=0.183 Sum_probs=25.3
Q ss_pred CCcEEEEEECCCCCEEEEEecCCeEEEEeccCC
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGG 64 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~ 64 (409)
-+.-+.|+|.|||++|++--..|.|++++-.++
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 356789999999987776654699999875543
No 422
>PRK13684 Ycf48-like protein; Provisional
Probab=90.06 E-value=13 Score=33.01 Aligned_cols=119 Identities=9% Similarity=0.004 Sum_probs=67.2
Q ss_pred ccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEE
Q 015290 216 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (409)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iw 295 (409)
.-...++++.+.++++.++.+..|.+.+=... .+.....+..+ ...-...+.++.+.|++ ..+++ +.+|.+. .
T Consensus 212 ~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d-~G~sW~~~~~~---~~~~~~~l~~v~~~~~~-~~~~~-G~~G~v~-~ 284 (334)
T PRK13684 212 NSSRRLQSMGFQPDGNLWMLARGGQIRFNDPD-DLESWSKPIIP---EITNGYGYLDLAYRTPG-EIWAG-GGNGTLL-V 284 (334)
T ss_pred CCcccceeeeEcCCCCEEEEecCCEEEEccCC-CCCccccccCC---ccccccceeeEEEcCCC-CEEEE-cCCCeEE-E
Confidence 34456788999999988888876776532222 33332221100 01112357889999987 65554 4566543 3
Q ss_pred eCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEc
Q 015290 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDI 355 (409)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~ 355 (409)
....++ .|.. ...+ ..-......+.|..+++.+++|..|.|--|+-
T Consensus 285 S~d~G~-------tW~~-~~~~------~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 285 SKDGGK-------TWEK-DPVG------EEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred eCCCCC-------CCeE-CCcC------CCCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence 333332 2221 0000 00013577788888888888888898887764
No 423
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.92 E-value=21 Score=35.03 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=68.0
Q ss_pred eeEEEeC--CCCCeEEEe-cCCeEEEEEccC-------C---Cce-eeeeecCCCcCcCccCceEEEEEe--CCCCCEEE
Q 015290 221 INSISNN--SDCETFVSA-DDLRINLWNLEI-------S---DQC-FNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLA 284 (409)
Q Consensus 221 v~~l~~~--~~~~~l~~~-~d~~i~lwd~~~-------~---~~~-~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~ 284 (409)
|+.|... -..+.|+.+ +||.|.+|.++. . ... .....+++.-...-...+++++++ ... +++|
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~-rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS-RLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-eEEE
Confidence 4444443 245677778 999999997731 0 000 000111221112234568899998 666 8888
Q ss_pred EEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCC-----C-EEEEeec-CeEEEEEc
Q 015290 285 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-----Q-HLLSRDY-MNLKLWDI 355 (409)
Q Consensus 285 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-----~-~l~sg~~-~~v~iwd~ 355 (409)
.++....|.||-...... +.... .+ ..|...|-+++|-++. . +|++++- |.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~-----r~~~~-~s--------~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDE-----RFYHV-PS--------HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEecccc-----ccccc-cc--------cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888886544211 10000 00 0134578888887653 2 5555553 88888887
No 424
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.80 E-value=2 Score=35.45 Aligned_cols=72 Identities=14% Similarity=0.125 Sum_probs=46.9
Q ss_pred eCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCc-------CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeC
Q 015290 226 NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD-------DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (409)
Q Consensus 226 ~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~ 297 (409)
+..++++|++- .+|.+++||+...+..+..+.+.+. +. .....|..+.++.+| .-+++-+ +|....|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pl-l~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPL-LNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHH-hcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEecc
Confidence 34567788777 9999999999943322222111110 11 355678999999988 7666655 467888887
Q ss_pred CCc
Q 015290 298 RQS 300 (409)
Q Consensus 298 ~~~ 300 (409)
.-+
T Consensus 95 ~L~ 97 (219)
T PF07569_consen 95 DLG 97 (219)
T ss_pred ccc
Confidence 654
No 425
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.77 E-value=7.3 Score=35.99 Aligned_cols=86 Identities=10% Similarity=0.163 Sum_probs=46.6
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEeCCC----ccccccccccccccccccCCccccccc-ccceeeeEeccCC----
Q 015290 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ----SALCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDG---- 339 (409)
Q Consensus 269 ~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~g---- 339 (409)
.|..+..++.| ..++-.+.+|.+.++=.+. +...+.. .+..+.. .+.....|... .-.+..++|+|+.
T Consensus 105 eV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk-~~v~CRt-~~i~~~~ftss~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 105 EVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGK-STVNCRT-TPVAERFFTSSTSLTLKQAAWHPSSILDP 181 (741)
T ss_pred EEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCC-ceEEEEe-ecccceeeccCCceeeeeccccCCccCCc
Confidence 46778889999 7777778888655432111 1000000 0111100 01111122211 2256788999975
Q ss_pred CEEEEeecCeEEEEEccC
Q 015290 340 QHLLSRDYMNLKLWDIRM 357 (409)
Q Consensus 340 ~~l~sg~~~~v~iwd~~~ 357 (409)
.+++-.+|+.+|+||+..
T Consensus 182 hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred eEEEEecCcEEEEEecCC
Confidence 345556789999999975
No 426
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.56 E-value=13 Score=32.30 Aligned_cols=152 Identities=14% Similarity=0.113 Sum_probs=74.5
Q ss_pred ccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEE
Q 015290 216 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 294 (409)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~i 294 (409)
.-.+.+..+..+++|++++++ ......-||-... ..... -..-...|.++.|.|++ .+.+.+ ..|.|+.
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~--~w~~~------~r~~~~riq~~gf~~~~-~lw~~~-~Gg~~~~ 211 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT--TWQPH------NRNSSRRIQSMGFSPDG-NLWMLA-RGGQIQF 211 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S--S-EEE------E--SSS-EEEEEE-TTS--EEEEE-TTTEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCc--cceEE------ccCccceehhceecCCC-CEEEEe-CCcEEEE
Confidence 444668888889999999999 4444556776511 11111 12234689999999998 665644 8888887
Q ss_pred EeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecccCcccc
Q 015290 295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPK 374 (409)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~ 374 (409)
=+..... ..|.. ...+.. .-.-.+..++|.++++..|+|+.|.+. ...+ .++.-+..+........
T Consensus 212 s~~~~~~------~~w~~-~~~~~~-----~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~D-gGktW~~~~~~~~~~~n 277 (302)
T PF14870_consen 212 SDDPDDG------ETWSE-PIIPIK-----TNGYGILDLAYRPPNEIWAVGGSGTLL-VSTD-GGKTWQKDRVGENVPSN 277 (302)
T ss_dssp EE-TTEE------EEE----B-TTS-----S--S-EEEEEESSSS-EEEEESTT-EE-EESS-TTSS-EE-GGGTTSSS-
T ss_pred ccCCCCc------ccccc-ccCCcc-----cCceeeEEEEecCCCCEEEEeCCccEE-EeCC-CCccceECccccCCCCc
Confidence 7622211 22222 001100 002358899999999998888777444 3333 35555555432221110
Q ss_pred cccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290 375 LCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (409)
Q Consensus 375 ~~~~~~~~~~~~v~~~~~spdg~~l~s~s 403 (409)
+ ..+.|.++.+-++.|.
T Consensus 278 ~------------~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 278 L------------YRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp --------------EEEEEETTEEEEE-S
T ss_pred e------------EEEEEcCCCceEEECC
Confidence 1 4788876665555543
No 427
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=88.72 E-value=28 Score=34.96 Aligned_cols=80 Identities=6% Similarity=-0.079 Sum_probs=46.5
Q ss_pred cceeeeEeccCCCEEEEe-ecCeEEEEEccCCCcceEEE-e--cccCccccc-ccccCCCCccceeeEEEcCCCCeEEEc
Q 015290 328 ASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATF-K--IHEHLRPKL-CDLYNNDSIFDKFECSVSGDGLHFATG 402 (409)
Q Consensus 328 ~~i~~~~~s~~g~~l~sg-~~~~v~iwd~~~~~~~~~~~-~--~~~~~~~~~-~~~~~~~~~~~v~~~~~spdg~~l~s~ 402 (409)
..|.+++...-+.+++.. .||+|.++|..+ -+.+... . .....+... ..-++-.++..+..++|||.+..++.-
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t-~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNT-MKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCc-chhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 567777777777777766 579999999865 4433333 1 011111111 111111122123469999999999988
Q ss_pred ccCCCC
Q 015290 403 SYRRDN 408 (409)
Q Consensus 403 s~dg~i 408 (409)
..||.+
T Consensus 339 ~~~~~~ 344 (753)
T PF11635_consen 339 DEDGKT 344 (753)
T ss_pred ecCCCc
Confidence 888763
No 428
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.71 E-value=17 Score=32.27 Aligned_cols=170 Identities=11% Similarity=0.087 Sum_probs=82.2
Q ss_pred cceeEEEeCCC-CCeEEEecCCe------EEEEEccCCC---ceeee---eecCCC---cCcCccCceEEEEEeCCCCCE
Q 015290 219 FNINSISNNSD-CETFVSADDLR------INLWNLEISD---QCFNI---VDMKPS---NMDDLTEVITSAEFHPIYCNL 282 (409)
Q Consensus 219 ~~v~~l~~~~~-~~~l~~~~d~~------i~lwd~~~~~---~~~~~---~~~~~~---~~~~~~~~v~~~~~~p~~~~~ 282 (409)
+.+..+.+.++ +.+++.+++|. +..+++.... ..+.. ..++.. .+..-..-..+|++.++| .+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-SF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-CE
Confidence 45678888854 55555556666 6555555211 11111 111100 011111134578887777 88
Q ss_pred EEEEeCC------CeEEEEeCCCccccccccccccccc-cccCCc-ccccccccceeeeEeccCCCEEEEee------cC
Q 015290 283 LAYSSSR------GFVRLVDMRQSALCDHSARILRDAA-ESHGSK-SFFTEIIASISDIKFANDGQHLLSRD------YM 348 (409)
Q Consensus 283 l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~i~~~~~s~~g~~l~sg~------~~ 348 (409)
+++.-.+ ..|..++.. ++.. ..+.... ..+... ..-......+.+++++|||+.|.++. |+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~----~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~ 173 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVI----RRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDG 173 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-Cccc----ceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCC
Confidence 8877666 788888876 4431 1111100 000000 00111245789999999999555432 21
Q ss_pred --e-------EEEEEcc--CCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEE
Q 015290 349 --N-------LKLWDIR--MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA 400 (409)
Q Consensus 349 --~-------v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 400 (409)
. ++|+... +.+.+...+......+.. ......+..+.+-+++++|+
T Consensus 174 ~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~------~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 174 PRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPT------APGDNGISDIAALPDGRLLV 230 (326)
T ss_pred cccccccCceEEEEEecCCCCCccceEEEEeCCcccc------ccCCCCceeEEEECCCcEEE
Confidence 1 5555544 223334443322221100 00223346889999998765
No 429
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=88.43 E-value=20 Score=32.77 Aligned_cols=148 Identities=9% Similarity=0.050 Sum_probs=78.8
Q ss_pred eeEEEeCCCCCeEEEecCCeEE-EEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCC
Q 015290 221 INSISNNSDCETFVSADDLRIN-LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (409)
Q Consensus 221 v~~l~~~~~~~~l~~~~d~~i~-lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~ 299 (409)
...+..++++.+++.+..|.+. -||-. ......+ -......++++.+.+++ .+++++ .+|.+. +....
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G--~~~W~~~------~~~~~~~l~~v~~~~dg-~l~l~g-~~G~l~-~S~d~ 309 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPG--QPYWQPH------NRASARRIQNMGWRADG-GLWLLT-RGGGLY-VSKGT 309 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCC--CcceEEe------cCCCccceeeeeEcCCC-CEEEEe-CCceEE-EecCC
Confidence 4456677888888888555443 34433 1111111 12234568899999998 777665 555543 33333
Q ss_pred ccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecccCccccccccc
Q 015290 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY 379 (409)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (409)
++... ...+..-.. ..-...+..+.|.+++..+++|..|.+....- .++.-........... +
T Consensus 310 G~~~~--~~~f~~~~~--------~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D--~G~tW~~~~~~~~~~~---~-- 372 (398)
T PLN00033 310 GLTEE--DFDFEEADI--------KSRGFGILDVGYRSKKEAWAAGGSGILLRSTD--GGKSWKRDKGADNIAA---N-- 372 (398)
T ss_pred CCccc--ccceeeccc--------CCCCcceEEEEEcCCCcEEEEECCCcEEEeCC--CCcceeEccccCCCCc---c--
Confidence 32100 001111000 00013588899999999999998887776642 2555444332111100 0
Q ss_pred CCCCccceeeEEEcCCCCeEEEcc
Q 015290 380 NNDSIFDKFECSVSGDGLHFATGS 403 (409)
Q Consensus 380 ~~~~~~~v~~~~~spdg~~l~s~s 403 (409)
. +.+.|.++++.+++|.
T Consensus 373 ----l---y~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 373 ----L---YSVKFFDDKKGFVLGN 389 (398)
T ss_pred ----e---eEEEEcCCCceEEEeC
Confidence 1 4889888777666654
No 430
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.98 E-value=4 Score=32.20 Aligned_cols=31 Identities=29% Similarity=0.241 Sum_probs=25.9
Q ss_pred ceEEEEEeCCC-----CCEEEEEeCCCeEEEEeCCC
Q 015290 269 VITSAEFHPIY-----CNLLAYSSSRGFVRLVDMRQ 299 (409)
Q Consensus 269 ~v~~~~~~p~~-----~~~l~s~s~dg~i~iwd~~~ 299 (409)
.+.+++|||.| ..+|++...++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78899999965 25899999999999998664
No 431
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.80 E-value=22 Score=32.51 Aligned_cols=113 Identities=11% Similarity=0.083 Sum_probs=66.2
Q ss_pred cccceeEEEeCCCCCeEEEecCCeEEEEEccCCCc-----eeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCe
Q 015290 217 HDFNINSISNNSDCETFVSADDLRINLWNLEISDQ-----CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 291 (409)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~ 291 (409)
....+..+.+.+++..++++.+|.+..= .. .+. .+... ........+.++.|.+++ ..+++ +..|.
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g~~G~l~~S-~d-~G~~~~~~~f~~~-----~~~~~~~~l~~v~~~~d~-~~~a~-G~~G~ 349 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLTRGGGLYVS-KG-TGLTEEDFDFEEA-----DIKSRGFGILDVGYRSKK-EAWAA-GGSGI 349 (398)
T ss_pred CccceeeeeEcCCCCEEEEeCCceEEEe-cC-CCCcccccceeec-----ccCCCCcceEEEEEcCCC-cEEEE-ECCCc
Confidence 3456788999999998888866765432 22 232 11211 011122458899999887 65555 46676
Q ss_pred EEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEE
Q 015290 292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW 353 (409)
Q Consensus 292 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iw 353 (409)
+.... ..++ .|.. .... ..-...+..+.|.++++.+++|.+|.|.-|
T Consensus 350 v~~s~-D~G~-------tW~~-~~~~------~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 350 LLRST-DGGK-------SWKR-DKGA------DNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred EEEeC-CCCc-------ceeE-cccc------CCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 55543 3332 2222 0000 001246789999988999999988877654
No 432
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=87.75 E-value=33 Score=34.62 Aligned_cols=102 Identities=9% Similarity=0.066 Sum_probs=65.1
Q ss_pred eEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccccc
Q 015290 232 TFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR 311 (409)
Q Consensus 232 ~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 311 (409)
.+++|-+..|++|++. .++.++. -..+...+..+...-.| ..++.|..-+.+.+.-.+..+-. .....
T Consensus 841 kllA~In~~vrLye~t-~~~eLr~-------e~~~~~~~~aL~l~v~g-deI~VgDlm~Sitll~y~~~eg~---f~evA 908 (1096)
T KOG1897|consen 841 KLLAGINQSVRLYEWT-TERELRI-------ECNISNPIIALDLQVKG-DEIAVGDLMRSITLLQYKGDEGN---FEEVA 908 (1096)
T ss_pred eEEEecCcEEEEEEcc-ccceehh-------hhcccCCeEEEEEEecC-cEEEEeeccceEEEEEEeccCCc---eEEee
Confidence 4666666789999998 4544443 34566788888888888 88999988777776554443210 01111
Q ss_pred ccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEcc
Q 015290 312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 356 (409)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~ 356 (409)
. .-+..+++++.+-.+..|+.+-..|.+++-...
T Consensus 909 r-----------D~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 909 R-----------DYNPNWMTAVEILDDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred h-----------hhCccceeeEEEecCceEEeecccccEEEEEec
Confidence 1 112357888888877666655555777766544
No 433
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.47 E-value=31 Score=33.93 Aligned_cols=76 Identities=9% Similarity=0.105 Sum_probs=51.2
Q ss_pred cccceeEEEeC--CCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCC--CC---EEEEEeC
Q 015290 217 HDFNINSISNN--SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY--CN---LLAYSSS 288 (409)
Q Consensus 217 ~~~~v~~l~~~--~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~---~l~s~s~ 288 (409)
-...++.++++ ...+++|++ ....|.||-.......... .+ -..+...|-+|+|-++. +. .+++++-
T Consensus 162 v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~--~~---s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI 236 (717)
T PF08728_consen 162 VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH--VP---SHQHSHNIPNVSFLDDDLDPNGHVKVVATDI 236 (717)
T ss_pred cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc--cc---ccccccCCCeeEeecCCCCCccceEEEEEec
Confidence 34467899998 778888888 7888888776632111111 00 12255678899997654 12 7888899
Q ss_pred CCeEEEEeC
Q 015290 289 RGFVRLVDM 297 (409)
Q Consensus 289 dg~i~iwd~ 297 (409)
.|.+.+|++
T Consensus 237 ~G~v~~~~I 245 (717)
T PF08728_consen 237 SGEVWTFKI 245 (717)
T ss_pred cCcEEEEEE
Confidence 999988887
No 434
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.39 E-value=20 Score=34.94 Aligned_cols=75 Identities=12% Similarity=0.106 Sum_probs=43.8
Q ss_pred eeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEE
Q 015290 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 274 (409)
Q Consensus 195 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 274 (409)
.|+++++.. +.+....-.| ..+-.+.|+.+...++...+|++.+|++- +..+....+. .......|..+.
T Consensus 65 ~I~If~~sG----~lL~~~~w~~-~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~--ge~ie~~svg---~e~~~~~I~ec~ 134 (829)
T KOG2280|consen 65 YIRIFNISG----QLLGRILWKH-GELIGMGWSDDEELICVQKDGTVHVYGLL--GEFIESNSVG---FESQMSDIVECR 134 (829)
T ss_pred eEEEEeccc----cchHHHHhcC-CCeeeecccCCceEEEEeccceEEEeecc--hhhhcccccc---cccccCceeEEE
Confidence 577777654 4333332233 37788999988776666699999999987 3333321111 122233455555
Q ss_pred EeCCC
Q 015290 275 FHPIY 279 (409)
Q Consensus 275 ~~p~~ 279 (409)
+..+|
T Consensus 135 ~f~~G 139 (829)
T KOG2280|consen 135 FFHNG 139 (829)
T ss_pred EecCc
Confidence 55566
No 435
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=87.06 E-value=17 Score=30.68 Aligned_cols=200 Identities=7% Similarity=0.041 Sum_probs=100.0
Q ss_pred cceEEEEEEecCCCCEEEEEeCCC--eEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (409)
.-...+.| ..+|.++-+.+.-| .|+.+|+.+++......+...-. .......+..+....+
T Consensus 45 aFTQGL~~--~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F--gEGit~~~d~l~qLTW------------- 107 (264)
T PF05096_consen 45 AFTQGLEF--LDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF--GEGITILGDKLYQLTW------------- 107 (264)
T ss_dssp -EEEEEEE--EETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----EEEEEEETTEEEEEES-------------
T ss_pred ccCccEEe--cCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc--ceeEEEECCEEEEEEe-------------
Confidence 34567788 35777777877766 78999999998766544332110 0000001111111111
Q ss_pred ccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCce
Q 015290 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (409)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (409)
.++...+||.++ .+.+..+ ...+.=..++ .+++.|+.+ ....+.++|.. +-+....+.+.. -...-..+
T Consensus 108 k~~~~f~yd~~t---l~~~~~~--~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~-~f~~~~~i~V~~--~g~pv~~L 177 (264)
T PF05096_consen 108 KEGTGFVYDPNT---LKKIGTF--PYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPE-TFKEVRTIQVTD--NGRPVSNL 177 (264)
T ss_dssp SSSEEEEEETTT---TEEEEEE--E-SSS--EEE--ECSSCEEEE-SSSEEEEE-TT-T-SEEEEEE-EE--TTEE---E
T ss_pred cCCeEEEEcccc---ceEEEEE--ecCCcceEEE--cCCCEEEEECCccceEEECCc-ccceEEEEEEEE--CCEECCCc
Confidence 255677777765 3344443 1123335666 467778887 78899999987 444444443321 11122456
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEeCCCcccccccccccccccccc--CCcccccccccceeeeEeccCCC-EEEEee
Q 015290 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH--GSKSFFTEIIASISDIKFANDGQ-HLLSRD 346 (409)
Q Consensus 271 ~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~s~~g~-~l~sg~ 346 (409)
+.+.|- +| .+.|-.=....|...|..+|+.. ..+....-.+ ...........-.+.+|+.|..+ +++||-
T Consensus 178 NELE~i-~G-~IyANVW~td~I~~Idp~tG~V~----~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 178 NELEYI-NG-KIYANVWQTDRIVRIDPETGKVV----GWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEE-TT-EEEEEETTSSEEEEEETTT-BEE----EEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EeEEEE-cC-EEEEEeCCCCeEEEEeCCCCeEE----EEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 777776 45 56665556667778888887642 1111100000 00000001135689999998765 555663
No 436
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=87.05 E-value=28 Score=32.97 Aligned_cols=29 Identities=10% Similarity=0.216 Sum_probs=22.2
Q ss_pred CCCEEEEee-cCeEEEEEccCCCcceEEEec
Q 015290 338 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKI 367 (409)
Q Consensus 338 ~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~ 367 (409)
.+.+|+.++ ++.|+.+|.++ ++.+-.++.
T Consensus 405 ~g~~v~~g~~dG~l~ald~~t-G~~lW~~~~ 434 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATT-GKELWKFRT 434 (488)
T ss_pred cCCeEEEECCCCeEEEEECCC-CceeeEEEC
Confidence 356777776 59999999987 888777664
No 437
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=87.02 E-value=29 Score=33.18 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=23.2
Q ss_pred CCCEEEEee-cCeEEEEEccCCCcceEEEeccc
Q 015290 338 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHE 369 (409)
Q Consensus 338 ~g~~l~sg~-~~~v~iwd~~~~~~~~~~~~~~~ 369 (409)
.+.+++.++ +|.++.+|.++ ++.+-.++...
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~T-Ge~lw~~~~g~ 502 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKT-GEELWKFKTGS 502 (527)
T ss_pred CCcEEEEECCCCeEEEEECCC-CCEeEEEeCCC
Confidence 345666676 59999999997 88887776544
No 438
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.63 E-value=22 Score=31.47 Aligned_cols=64 Identities=13% Similarity=0.110 Sum_probs=42.0
Q ss_pred eeEEEeCCCCCeEEEe-cC------CeEEEEEccCCCceeeeeecCCC--------cCcCccCceEEEEEeCCCCCEEEE
Q 015290 221 INSISNNSDCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPS--------NMDDLTEVITSAEFHPIYCNLLAY 285 (409)
Q Consensus 221 v~~l~~~~~~~~l~~~-~d------~~i~lwd~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~~p~~~~~l~s 285 (409)
.-+|++.+++.++++. .+ ..|..++.. +.....+.++.. .-......+.+++++|+| +.|++
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-~~l~~ 163 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-RTLFA 163 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCC-CEEEE
Confidence 3467777788888887 77 778777765 555555433321 112245678999999999 75555
Q ss_pred Ee
Q 015290 286 SS 287 (409)
Q Consensus 286 ~s 287 (409)
+.
T Consensus 164 ~~ 165 (326)
T PF13449_consen 164 AM 165 (326)
T ss_pred EE
Confidence 43
No 439
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=86.28 E-value=3.1 Score=23.03 Aligned_cols=29 Identities=10% Similarity=0.241 Sum_probs=20.0
Q ss_pred CCCcEEEEEECCCCCEEEEEec-C--CeEEEE
Q 015290 31 DVDIVSAIEFDKTGDYLAVGDR-G--GRVILF 59 (409)
Q Consensus 31 h~~~v~~v~~~~~~~~la~~~~-d--g~i~iw 59 (409)
....-....|+|||++|+-++. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3456788999999998887664 3 555555
No 440
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.94 E-value=0.17 Score=45.54 Aligned_cols=98 Identities=10% Similarity=0.109 Sum_probs=62.0
Q ss_pred ceeEEEeCCCCCeEEE-e-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeC
Q 015290 220 NINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (409)
Q Consensus 220 ~v~~l~~~~~~~~l~~-~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~ 297 (409)
....++|..++..++. + ..+.+.+||+. +....+. +. -..|... -+.|++.+ ..++.+...|.+.|++.
T Consensus 76 ~aldm~wDkegdvlavlAek~~piylwd~n-~eytqqL-E~----gg~~s~s--ll~wsKg~-~el~ig~~~gn~viynh 146 (615)
T KOG2247|consen 76 KALDMAWDKEGDVLAVLAEKTGPIYLWDVN-SEYTQQL-ES----GGTSSKS--LLAWSKGT-PELVIGNNAGNIVIYNH 146 (615)
T ss_pred hHhhhhhccccchhhhhhhcCCCeeechhh-hhhHHHH-hc----cCcchHH--HHhhccCC-ccccccccccceEEEec
Confidence 3456778777776665 5 88999999998 3322211 00 1112222 27889988 78888888899999998
Q ss_pred CCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (409)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 343 (409)
...+.. -... .|...++++++.+.+..+.
T Consensus 147 gtsR~i----iv~G-------------kh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 147 GTSRRI----IVMG-------------KHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred cchhhh----hhhc-------------ccccceeEEEecccceeee
Confidence 765421 1111 1456788888888765444
No 441
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.46 E-value=38 Score=33.10 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=29.7
Q ss_pred cceeeeEeccCCCEEEEeec-CeEEEEEccCCCcceEEEe
Q 015290 328 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK 366 (409)
Q Consensus 328 ~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~~~~~~~~~~ 366 (409)
+.+..+..||+.++|+--.+ |.|.+-+.+. .+.+..+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~-~~~lce~~ 255 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDL-SQILCEFN 255 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecch-hhhhhccC
Confidence 46888999999999998765 9888888775 55555555
No 442
>PHA03098 kelch-like protein; Provisional
Probab=85.40 E-value=36 Score=32.67 Aligned_cols=23 Identities=4% Similarity=-0.080 Sum_probs=14.6
Q ss_pred CCCCEEEEEeCC--------CeEEEEeCCCcc
Q 015290 278 IYCNLLAYSSSR--------GFVRLVDMRQSA 301 (409)
Q Consensus 278 ~~~~~l~s~s~d--------g~i~iwd~~~~~ 301 (409)
++ .+++.|+.+ ..+.+||..+++
T Consensus 437 ~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 437 DG-KIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred CC-EEEEECCccCCCCCcccceEEEecCCCCc
Confidence 44 667777643 237888887754
No 443
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.16 E-value=39 Score=35.10 Aligned_cols=33 Identities=33% Similarity=0.523 Sum_probs=28.0
Q ss_pred CCcEEEEEECCCCCEEEEEecCCeEEEEeccCC
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGG 64 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~~ 64 (409)
......++|+|...++|.|...|.|++|-...-
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccce
Confidence 346678899999999999999999999986643
No 444
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.75 E-value=21 Score=37.08 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=54.0
Q ss_pred cccceeEEEeCCCCCeEEEecCCeEEEEEccC---CC---ceeeeeecC----------CCcCc-CccCceEEEEEeCCC
Q 015290 217 HDFNINSISNNSDCETFVSADDLRINLWNLEI---SD---QCFNIVDMK----------PSNMD-DLTEVITSAEFHPIY 279 (409)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~---~~---~~~~~~~~~----------~~~~~-~~~~~v~~~~~~p~~ 279 (409)
....|+|+....+|+.+++|.|| .+|.+.. .+ +..+.++.. ...+. .+.++|..+..+..-
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred CCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 35568899988899999999666 4454421 11 000111100 01223 567899999999887
Q ss_pred CCEEEEEeCCCeEEEEeCCC
Q 015290 280 CNLLAYSSSRGFVRLVDMRQ 299 (409)
Q Consensus 280 ~~~l~s~s~dg~i~iwd~~~ 299 (409)
.++.+-+..|+|.+||+..
T Consensus 255 -~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 -NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred -ceeeeeccCceEEEEEccC
Confidence 8999999999999999987
No 445
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=83.07 E-value=47 Score=32.18 Aligned_cols=68 Identities=13% Similarity=0.095 Sum_probs=35.1
Q ss_pred EEeCCCCCeEEEe-cC------CeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCe-----
Q 015290 224 ISNNSDCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF----- 291 (409)
Q Consensus 224 l~~~~~~~~l~~~-~d------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~----- 291 (409)
+++. ++...++| .| .++..||.. ..+-...- .+....... +++. -+| .+.+.|+.||.
T Consensus 328 ~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~-~~~W~~~a-----~M~~~R~~~-~v~~-l~g-~iYavGG~dg~~~l~s 397 (571)
T KOG4441|consen 328 VAVL-NGKLYVVGGYDSGSDRLSSVERYDPR-TNQWTPVA-----PMNTKRSDF-GVAV-LDG-KLYAVGGFDGEKSLNS 397 (571)
T ss_pred EEEE-CCEEEEEccccCCCcccceEEEecCC-CCceeccC-----CccCccccc-eeEE-ECC-EEEEEecccccccccc
Confidence 3443 34566666 65 356778877 33332221 122122211 1121 235 78888988864
Q ss_pred EEEEeCCCcc
Q 015290 292 VRLVDMRQSA 301 (409)
Q Consensus 292 i~iwd~~~~~ 301 (409)
+-.||..+.+
T Consensus 398 vE~YDp~~~~ 407 (571)
T KOG4441|consen 398 VECYDPVTNK 407 (571)
T ss_pred EEEecCCCCc
Confidence 6677877654
No 446
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=81.60 E-value=16 Score=33.74 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=33.8
Q ss_pred CCEEEEeec-CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcc
Q 015290 339 GQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (409)
Q Consensus 339 g~~l~sg~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s 403 (409)
.-|+|.|+. |.|++||.- +.+....+++-...+ ..+..+.+|+++++.+
T Consensus 573 sGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aI---------------k~idvta~Gk~ilaTC 622 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAI---------------KHIDVTANGKHILATC 622 (776)
T ss_pred CceEEEecCCCceeeehhh-cchhhhcCcccccce---------------eeeEeecCCcEEEEee
Confidence 458999987 999999964 334444555555554 3678888888766544
No 447
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=81.09 E-value=5.7 Score=21.89 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=18.3
Q ss_pred ccCceEEEEEeCCCCCEEEEEe-CC--CeEEEE
Q 015290 266 LTEVITSAEFHPIYCNLLAYSS-SR--GFVRLV 295 (409)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~s~s-~d--g~i~iw 295 (409)
....-....|+||| +.|+..+ .+ |...||
T Consensus 7 ~~~~~~~p~~SpDG-k~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDG-KYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTS-SEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCC-CEEEEEecCCCCCCcCEE
Confidence 34456789999999 6666554 44 555555
No 448
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=81.02 E-value=34 Score=29.12 Aligned_cols=144 Identities=9% Similarity=0.008 Sum_probs=81.0
Q ss_pred cceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeC
Q 015290 219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (409)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~ 297 (409)
.....++-.|||..-+++ ..+.|--.|.. +++.... -.+.......+...||| ..-++-+.. .|.-.|-
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~-tGev~~y-------pLg~Ga~Phgiv~gpdg-~~Witd~~~-aI~R~dp 131 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPA-TGEVETY-------PLGSGASPHGIVVGPDG-SAWITDTGL-AIGRLDP 131 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCC-CCceEEE-------ecCCCCCCceEEECCCC-CeeEecCcc-eeEEecC
Confidence 344678888898877887 77777777777 4544332 22334455678888998 444432222 4555666
Q ss_pred CCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecccCccccccc
Q 015290 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD 377 (409)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 377 (409)
++.+. +.|.... .--...+....|.+.|++-.++..|.---.|.. ...+.++....+.-+
T Consensus 132 kt~ev-----t~f~lp~---------~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa--~~~i~vfpaPqG~gp---- 191 (353)
T COG4257 132 KTLEV-----TRFPLPL---------EHADANLETAVFDPWGNLWFTGQIGAYGRLDPA--RNVISVFPAPQGGGP---- 191 (353)
T ss_pred cccce-----EEeeccc---------ccCCCcccceeeCCCccEEEeeccccceecCcc--cCceeeeccCCCCCC----
Confidence 55432 3332200 001356788999999998888743211111221 234444444333221
Q ss_pred ccCCCCccceeeEEEcCCCCeEEEc
Q 015290 378 LYNNDSIFDKFECSVSGDGLHFATG 402 (409)
Q Consensus 378 ~~~~~~~~~v~~~~~spdg~~l~s~ 402 (409)
..++-.|||..-.+.
T Consensus 192 ----------yGi~atpdGsvwyas 206 (353)
T COG4257 192 ----------YGICATPDGSVWYAS 206 (353)
T ss_pred ----------cceEECCCCcEEEEe
Confidence 478888888765553
No 449
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=80.81 E-value=11 Score=36.35 Aligned_cols=74 Identities=11% Similarity=0.040 Sum_probs=40.4
Q ss_pred CCCCeEEEe-cCCeEEEEEccC---CCceeeeeecCCC----cCc-----------CccCceEEEEEeC----CCCCEEE
Q 015290 228 SDCETFVSA-DDLRINLWNLEI---SDQCFNIVDMKPS----NMD-----------DLTEVITSAEFHP----IYCNLLA 284 (409)
Q Consensus 228 ~~~~~l~~~-~d~~i~lwd~~~---~~~~~~~~~~~~~----~~~-----------~~~~~v~~~~~~p----~~~~~l~ 284 (409)
++...++.+ .||.+....... .+........... .+. .......++++++ +. .+++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDD-TFLF 234 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETT-TEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCC-CEEE
Confidence 456677777 888888777663 2222222111110 000 0123455666666 44 8999
Q ss_pred EEeCCCeEEEEeCCCccc
Q 015290 285 YSSSRGFVRLVDMRQSAL 302 (409)
Q Consensus 285 s~s~dg~i~iwd~~~~~~ 302 (409)
+.+.|+.+|+||+.+++.
T Consensus 235 tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EEETTSEEEEEETTTTCE
T ss_pred EEeCCCeEEEEECCCCeE
Confidence 999999999999999874
No 450
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=80.24 E-value=22 Score=26.49 Aligned_cols=80 Identities=15% Similarity=0.238 Sum_probs=50.0
Q ss_pred EEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceeccce
Q 015290 37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (409)
Q Consensus 37 ~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 116 (409)
.-.|.....-|++++..|.|.|++....... ..+ .-..+.-|.++..|
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~------------------------------~~~--~~~~i~~LNin~~i 50 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQR------------------------------TGR--QDSDISFLNINQEI 50 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccc------------------------------ccc--ccCceeEEECCCce
Confidence 3457666778999999999999997654320 000 01124445555788
Q ss_pred EEEEEEe---cCCCCEEEEEeCCCeEEEEEcCCcee
Q 015290 117 NRVRWCA---APNGSMFILSTNDKTIKLWKVRDQKV 149 (409)
Q Consensus 117 ~~l~~~~---s~~~~~l~s~~~d~~i~iwd~~~~~~ 149 (409)
++|+--+ +.+...|+.|+. ..+..||+.+..-
T Consensus 51 talaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d 85 (136)
T PF14781_consen 51 TALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSD 85 (136)
T ss_pred EEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCch
Confidence 8886543 233456666665 5688999987643
No 451
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=80.05 E-value=39 Score=29.27 Aligned_cols=28 Identities=11% Similarity=0.264 Sum_probs=23.6
Q ss_pred EEEEEECCCCCEEEEEecCCeEEEEecc
Q 015290 35 VSAIEFDKTGDYLAVGDRGGRVILFETV 62 (409)
Q Consensus 35 v~~v~~~~~~~~la~~~~dg~i~iw~~~ 62 (409)
-+-|+|+|.+.+-++....+...+||..
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~ 52 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGN 52 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCC
Confidence 4689999998777777778899999987
No 452
>PRK10115 protease 2; Provisional
Probab=79.94 E-value=68 Score=31.98 Aligned_cols=33 Identities=6% Similarity=0.054 Sum_probs=24.3
Q ss_pred CcEEEEEECCCCCEEEEEecC-----CeEEEEeccCCc
Q 015290 33 DIVSAIEFDKTGDYLAVGDRG-----GRVILFETVGGK 65 (409)
Q Consensus 33 ~~v~~v~~~~~~~~la~~~~d-----g~i~iw~~~~~~ 65 (409)
-.+..+.++|||++||.+... ..|.+.|+.++.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~ 164 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN 164 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC
Confidence 357788999999999876432 357788887665
No 453
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=79.35 E-value=29 Score=27.36 Aligned_cols=33 Identities=15% Similarity=0.433 Sum_probs=24.5
Q ss_pred cceEEEEEEe---cCC-CCEEEEEeCCCeEEEEEcCC
Q 015290 114 EKINRVRWCA---APN-GSMFILSTNDKTIKLWKVRD 146 (409)
Q Consensus 114 ~~v~~l~~~~---s~~-~~~l~s~~~d~~i~iwd~~~ 146 (409)
..|.+++|.| .++ +.+|++...++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 4799999954 112 34677889999999998764
No 454
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=79.12 E-value=42 Score=29.11 Aligned_cols=134 Identities=11% Similarity=0.079 Sum_probs=62.3
Q ss_pred ccceeEEEeCCCC-----CeEEEe--cCCeEEEEEccCCCceeeeeecCCCcCc------------CccCceEEEEEeC-
Q 015290 218 DFNINSISNNSDC-----ETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD------------DLTEVITSAEFHP- 277 (409)
Q Consensus 218 ~~~v~~l~~~~~~-----~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~------------~~~~~v~~~~~~p- 277 (409)
.+.+..+.+.... .++..+ ..+.|.++|+. .++..++..-....-+ .....+..++.+|
T Consensus 60 ~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~-~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~ 138 (287)
T PF03022_consen 60 DSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLA-TGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPI 138 (287)
T ss_dssp CGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETT-TTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TT
T ss_pred ccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEcc-CCcEEEEecCCcceeccccceeccCceEecCCCccccccCCC
Confidence 3456666665421 244444 45688899998 5555544322100000 0123366666665
Q ss_pred --CCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEE
Q 015290 278 --IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWD 354 (409)
Q Consensus 278 --~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd 354 (409)
++ +.|+.....+. ++|-+.+..+..... ... .........+..-......++++++|.+..+--. +.|..|+
T Consensus 139 ~~d~-r~LYf~~lss~-~ly~v~T~~L~~~~~--~~~-~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~ 213 (287)
T PF03022_consen 139 SPDG-RWLYFHPLSSR-KLYRVPTSVLRDPSL--SDA-QALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWD 213 (287)
T ss_dssp STTS--EEEEEETT-S-EEEEEEHHHHCSTT----HH-H-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEE
T ss_pred CCCc-cEEEEEeCCCC-cEEEEEHHHhhCccc--ccc-ccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEe
Confidence 55 56666554432 344443321111000 000 0000000001111135567889998877777654 9999999
Q ss_pred ccC
Q 015290 355 IRM 357 (409)
Q Consensus 355 ~~~ 357 (409)
...
T Consensus 214 ~~~ 216 (287)
T PF03022_consen 214 PDG 216 (287)
T ss_dssp TTT
T ss_pred CCC
Confidence 863
No 455
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=78.95 E-value=34 Score=27.92 Aligned_cols=76 Identities=14% Similarity=0.138 Sum_probs=43.3
Q ss_pred ccceeEEEeCCCCCeEEEecCCeEEEEEccCCC---ceeeeeecCCCcCcCccC-ceEEEEEeCCCCCEEEEEeCCCeEE
Q 015290 218 DFNINSISNNSDCETFVSADDLRINLWNLEISD---QCFNIVDMKPSNMDDLTE-VITSAEFHPIYCNLLAYSSSRGFVR 293 (409)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~---~~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~s~s~dg~i~ 293 (409)
..++.+++-.|-...|+.|.++.+.+|.+.... ..+..++....-+.-|.+ .+..+++.- .++|..+ +-.++
T Consensus 134 ~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic~---~yiA~~s-~~ev~ 209 (215)
T PF14761_consen 134 SEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAICE---GYIAVMS-DLEVL 209 (215)
T ss_pred CCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecCceEEEEEEEe---eEEEEec-CCEEE
Confidence 456788888887667888877889999887211 112333332221222222 255666663 5677665 44566
Q ss_pred EEeC
Q 015290 294 LVDM 297 (409)
Q Consensus 294 iwd~ 297 (409)
++.+
T Consensus 210 Vlkl 213 (215)
T PF14761_consen 210 VLKL 213 (215)
T ss_pred EEEE
Confidence 6543
No 456
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=78.91 E-value=36 Score=28.59 Aligned_cols=119 Identities=15% Similarity=0.099 Sum_probs=59.5
Q ss_pred ceEEEEEeCCCCCEEEEEeC-C--CeEEEEeCCC-ccccccccccccccccccCCcccccccccceeeeEeccCCCEEEE
Q 015290 269 VITSAEFHPIYCNLLAYSSS-R--GFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (409)
Q Consensus 269 ~v~~~~~~p~~~~~l~s~s~-d--g~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s 344 (409)
...+-.+-|+| ++|.+|+. + ..+++++... ...+ .|.. .+.. + ....+--....-|||+.|+.
T Consensus 68 FCSgg~~L~dG-~ll~tGG~~~G~~~ir~~~p~~~~~~~-----~w~e---~~~~---m-~~~RWYpT~~~L~DG~vlIv 134 (243)
T PF07250_consen 68 FCSGGAFLPDG-RLLQTGGDNDGNKAIRIFTPCTSDGTC-----DWTE---SPND---M-QSGRWYPTATTLPDGRVLIV 134 (243)
T ss_pred cccCcCCCCCC-CEEEeCCCCccccceEEEecCCCCCCC-----CceE---Cccc---c-cCCCccccceECCCCCEEEE
Confidence 33445677999 99998875 2 3477887544 1111 1111 0000 0 00234445666789999888
Q ss_pred eec--CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEcccCCC
Q 015290 345 RDY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYRRD 407 (409)
Q Consensus 345 g~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~s~dg~ 407 (409)
|+. ....+|.-.........+..-.... .....+-. --+...|||++++.+..+..
T Consensus 135 GG~~~~t~E~~P~~~~~~~~~~~~~l~~~~---~~~~~nlY----P~~~llPdG~lFi~an~~s~ 192 (243)
T PF07250_consen 135 GGSNNPTYEFWPPKGPGPGPVTLPFLSQTS---DTLPNNLY----PFVHLLPDGNLFIFANRGSI 192 (243)
T ss_pred eCcCCCcccccCCccCCCCceeeecchhhh---ccCccccC----ceEEEcCCCCEEEEEcCCcE
Confidence 763 5667776532111111111000000 00000111 25777899999988877654
No 457
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=78.33 E-value=19 Score=24.68 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=26.6
Q ss_pred CCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEee
Q 015290 288 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (409)
Q Consensus 288 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~ 346 (409)
.+|.+..||..+++.. ..+.. -.-.+.+++++|+.+|+.+.
T Consensus 35 ~~GRll~ydp~t~~~~----vl~~~--------------L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETT----VLLDG--------------LYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp --EEEEEEETTTTEEE----EEEEE--------------ESSEEEEEE-TTSSEEEEEE
T ss_pred CCcCEEEEECCCCeEE----EehhC--------------CCccCeEEEcCCCCEEEEEe
Confidence 4577888888887631 12222 23568899999999988874
No 458
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=77.57 E-value=37 Score=27.59 Aligned_cols=36 Identities=6% Similarity=0.092 Sum_probs=24.8
Q ss_pred EEEEEecCCCCEEEEEeCC--CeEEEEEcCCceeeeeeccC
Q 015290 118 RVRWCAAPNGSMFILSTND--KTIKLWKVRDQKVKKIKEMD 156 (409)
Q Consensus 118 ~l~~~~s~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~ 156 (409)
.+.+ .+|+++.+.+.- ..|++||+.+++........
T Consensus 50 GL~~---~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~ 87 (262)
T COG3823 50 GLEY---LDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA 87 (262)
T ss_pred ceee---eCCEEEEeccccccceeEEEeccCceEEEEeecC
Confidence 4555 466677776543 47999999999887665543
No 459
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=77.18 E-value=87 Score=31.72 Aligned_cols=132 Identities=13% Similarity=0.103 Sum_probs=78.0
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeeccccccc
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (409)
.+..+++|+| .+...||.....|...||++............... . ..
T Consensus 146 ~~~aDv~FnP-~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~-----------------------------~--~~ 193 (765)
T PF10214_consen 146 FPHADVAFNP-WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSR-----------------------------N--IS 193 (765)
T ss_pred CccceEEecc-CccceEEEEeccCcEEEEEeccccccCCcceeecc-----------------------------C--CC
Confidence 4678899976 45568999999999999999322211110000000 0 01
Q ss_pred ceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceee-eeecCCCcCcCccCceEE
Q 015290 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFN-IVDMKPSNMDDLTEVITS 272 (409)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~ 272 (409)
|.| +.|. .....-..+.|.++.+.|+.+....+.++|++ ...... .+ .......|..
T Consensus 194 gsi-~~d~--------------~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~-~~~~~~~l~------~~~~~~~IlD 251 (765)
T PF10214_consen 194 GSI-IFDP--------------EELSNWKRILWVSDSNRLLVCNRSKLMLIDFE-SNWQTEYLV------TAKTWSWILD 251 (765)
T ss_pred ccc-cCCC--------------cccCcceeeEecCCCCEEEEEcCCceEEEECC-CCCccchhc------cCCChhheee
Confidence 111 1111 11234457889888888998877889999998 443322 21 2334567888
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEeCCCc
Q 015290 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQS 300 (409)
Q Consensus 273 ~~~~p~~~~~l~s~s~dg~i~iwd~~~~ 300 (409)
+.-+|..+.+++.- ....|...|+...
T Consensus 252 v~~~~~~~~~~FiL-Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 252 VKRSPDNPSHVFIL-TSKEIIWLDVKSS 278 (765)
T ss_pred EEecCCccceEEEE-ecCeEEEEEccCC
Confidence 98888843333322 2356777787763
No 460
>PRK10115 protease 2; Provisional
Probab=76.93 E-value=83 Score=31.36 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=61.6
Q ss_pred ceeEEEeCCCCCeEEEe-c-CC----eEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC----
Q 015290 220 NINSISNNSDCETFVSA-D-DL----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---- 289 (409)
Q Consensus 220 ~v~~l~~~~~~~~l~~~-~-d~----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d---- 289 (409)
.+..+.++|++++|+.+ + +| .|++.|+. ++..+.. .+.+ .-..++|.+|+ +.|+....+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~-tg~~l~~------~i~~---~~~~~~w~~D~-~~~~y~~~~~~~~ 196 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLE-TGNWYPE------LLDN---VEPSFVWANDS-WTFYYVRKHPVTL 196 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECC-CCCCCCc------cccC---cceEEEEeeCC-CEEEEEEecCCCC
Confidence 45678899999999876 2 23 57788887 4442211 0221 11469999998 655554432
Q ss_pred --CeEEEEeCCCccccccccccccccccccCCccccccccccee-eeEeccCCCEEEEee----cCeEEEEEcc
Q 015290 290 --GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS-DIKFANDGQHLLSRD----YMNLKLWDIR 356 (409)
Q Consensus 290 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~g~~l~sg~----~~~v~iwd~~ 356 (409)
..|..+++.++.... ..+++. . ..... ....+.++++++..+ ++.+.+|+..
T Consensus 197 ~~~~v~~h~lgt~~~~d--~lv~~e-~------------~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 197 LPYQVWRHTIGTPASQD--ELVYEE-K------------DDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCCEEEEEECCCChhHC--eEEEee-C------------CCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 356667776652111 122322 0 11122 333455888766432 2678998853
No 461
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=76.73 E-value=17 Score=34.90 Aligned_cols=30 Identities=10% Similarity=0.448 Sum_probs=25.2
Q ss_pred CCCEEEEEeCCCeEEEEEcCCceeeeeecc
Q 015290 126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEM 155 (409)
Q Consensus 126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 155 (409)
+..++++.+.|+++|+||+.++++......
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence 567899999999999999999988665443
No 462
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=76.52 E-value=28 Score=33.97 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=27.9
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCcee
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV 149 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~ 149 (409)
.-++++.- .|.++.++++..||.|++|++.....
T Consensus 15 e~~~aiqs--hp~~~s~v~~~~d~si~lfn~~~r~q 48 (1636)
T KOG3616|consen 15 EFTTAIQS--HPGGQSFVLAHQDGSIILFNFIPRRQ 48 (1636)
T ss_pred ceeeeeee--cCCCceEEEEecCCcEEEEeecccch
Confidence 46777777 48999999999999999999876543
No 463
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=74.54 E-value=27 Score=31.92 Aligned_cols=59 Identities=14% Similarity=0.096 Sum_probs=40.4
Q ss_pred CEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccC
Q 015290 281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM 357 (409)
Q Consensus 281 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~ 357 (409)
+-|++-+..|++.++.....+. -.++. . -..+.-+++||.+.+|++-..|.++++.+++
T Consensus 329 kgF~~l~~~G~L~~f~st~~~~-----lL~~~-~------------~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~N 387 (733)
T COG4590 329 KGFYSLYRNGTLQSFYSTSEKL-----LLFER-A------------YQAPQLVAMSPNQAYLLSEDQGKIRLAQLEN 387 (733)
T ss_pred ceEEEEcCCCceeeeecccCcc-----eehhh-h------------hcCcceeeeCcccchheeecCCceEEEEecC
Confidence 5677777788887776544332 11111 0 1245668999999999988779999999875
No 464
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.02 E-value=37 Score=31.70 Aligned_cols=99 Identities=19% Similarity=0.297 Sum_probs=52.6
Q ss_pred CCcEEEEEECCCCCEEEEEecCCeEEEEeccC-CcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVG-GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
.-.|..+..++.|..+|-.+.+|.+.++=... +.. ..++ +-.|...+.. + +-..+| +.++
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~--------s~~e-------Dgk~~v~CRt-~-~i~~~~-ftss- 163 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKN--------SEFE-------DGKSTVNCRT-T-PVAERF-FTSS- 163 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCcc--------ceec-------CCCceEEEEe-e-ccccee-eccC-
Confidence 34688899999999999999999666543110 000 0000 0000011110 0 000000 0000
Q ss_pred eeccceEEEEEEecC-CCCEEEEEeCCCeEEEEEcCCceee
Q 015290 111 EIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVK 150 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~ 150 (409)
..-.+...+|+|+. ....|..-+.|++||+|++......
T Consensus 164 -~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 164 -TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred -CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 00357788998743 2356777788999999999765443
No 465
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=74.00 E-value=73 Score=29.29 Aligned_cols=80 Identities=14% Similarity=0.052 Sum_probs=44.8
Q ss_pred cccccceeEEEeCCCCCeEEEecCCeEEEEEccCCCceee-eeecCCCcCcC-ccCceE-EEEEeCCCCCEEEEEeCCCe
Q 015290 215 HAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFN-IVDMKPSNMDD-LTEVIT-SAEFHPIYCNLLAYSSSRGF 291 (409)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~-~~~~~~~~~~~-~~~~v~-~~~~~p~~~~~l~s~s~dg~ 291 (409)
..--..+..+-..|||+.+..-....+.++++....-..+ .++.. ++ ....|+ ++..-..| ..+..++.||.
T Consensus 217 ~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~ds----pg~~~~~Vte~l~lL~Gg-~SLLv~~~dG~ 291 (733)
T COG4590 217 SVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDS----PGDSRHQVTEQLYLLSGG-FSLLVVHEDGL 291 (733)
T ss_pred CCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcC----CCchHHHHHHHHHHHhCc-eeEEEEcCCCc
Confidence 3444567778889999998887557888888872211111 11000 11 001122 12222334 67778888888
Q ss_pred EEEE-eCCC
Q 015290 292 VRLV-DMRQ 299 (409)
Q Consensus 292 i~iw-d~~~ 299 (409)
|.-| |.+.
T Consensus 292 vsQWFdvr~ 300 (733)
T COG4590 292 VSQWFDVRR 300 (733)
T ss_pred eeeeeeeec
Confidence 8776 5554
No 466
>PHA03098 kelch-like protein; Provisional
Probab=73.99 E-value=86 Score=30.09 Aligned_cols=23 Identities=4% Similarity=0.132 Sum_probs=15.6
Q ss_pred CCCCEEEEEeCC-----CeEEEEeCCCcc
Q 015290 278 IYCNLLAYSSSR-----GFVRLVDMRQSA 301 (409)
Q Consensus 278 ~~~~~l~s~s~d-----g~i~iwd~~~~~ 301 (409)
++ ++++.|+.+ +.+.+||..+++
T Consensus 487 ~~-~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 487 NN-KIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CC-EEEEEcCCcCCcccceeEEEeCCCCE
Confidence 45 777777654 467888887653
No 467
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=73.80 E-value=74 Score=29.30 Aligned_cols=155 Identities=8% Similarity=0.187 Sum_probs=0.0
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCceee---eeeccCCCcccccccccccccCceeccCCCCCceeecccccccceeEEEe
Q 015290 124 APNGSMFILSTNDKTIKLWKVRDQKVK---KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIAN 200 (409)
Q Consensus 124 s~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 200 (409)
..+...+++|+..|.++||+...+... ...+
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE---------------------------------------------- 67 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE---------------------------------------------- 67 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEE----------------------------------------------
Q ss_pred cCCcccceeeeeeccccccceeEEEe----CCCCCeEEEe-cCCeEEEEEccCCCce------eeeeecCCCcCcCccCc
Q 015290 201 VGNSVHARCQKVYPHAHDFNINSISN----NSDCETFVSA-DDLRINLWNLEISDQC------FNIVDMKPSNMDDLTEV 269 (409)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~v~~l~~----~~~~~~l~~~-~d~~i~lwd~~~~~~~------~~~~~~~~~~~~~~~~~ 269 (409)
..-..+|..++. +......++. .-..+.+|.+...... ...--+-.+.+......
T Consensus 68 --------------~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~n 133 (418)
T PF14727_consen 68 --------------TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYN 133 (418)
T ss_pred --------------EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeE
Q ss_pred eEEEEEeCCC-CCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeec-
Q 015290 270 ITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 347 (409)
Q Consensus 270 v~~~~~~p~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~- 347 (409)
...-.|---. ..++..-+.||.+.+|+-+.-... ..+.. .--...+++.+.-..+++++.
T Consensus 134 m~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~----~~lp~--------------~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 134 MCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFS----RFLPD--------------FLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEECCCCCCceEEEEEecCceEEEEeCCcEEEE----EEcCC--------------CCCCcCeEEeecCCEEEEecCc
Q ss_pred CeEEEEEcc
Q 015290 348 MNLKLWDIR 356 (409)
Q Consensus 348 ~~v~iwd~~ 356 (409)
..|.-|...
T Consensus 196 ~~l~~Yky~ 204 (418)
T PF14727_consen 196 WTLECYKYQ 204 (418)
T ss_pred eeEEEecHH
No 468
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=72.28 E-value=11 Score=19.09 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=20.7
Q ss_pred CcEEEEEECCCCCEEEEEecCCeEEEEe
Q 015290 33 DIVSAIEFDKTGDYLAVGDRGGRVILFE 60 (409)
Q Consensus 33 ~~v~~v~~~~~~~~la~~~~dg~i~iw~ 60 (409)
..|.+|+.++ .++|++...+.+|+|.
T Consensus 2 E~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC--CEEEEEeCCCeEEecC
Confidence 4688888874 5888888889999874
No 469
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=70.92 E-value=1.2e+02 Score=30.65 Aligned_cols=138 Identities=15% Similarity=0.158 Sum_probs=75.6
Q ss_pred ccccceeEEEeC---C----CCCeEEEecCCeEEEEEccCCCc------eeeeeecCC-CcCc---CccCceEEEEEeCC
Q 015290 216 AHDFNINSISNN---S----DCETFVSADDLRINLWNLEISDQ------CFNIVDMKP-SNMD---DLTEVITSAEFHPI 278 (409)
Q Consensus 216 ~~~~~v~~l~~~---~----~~~~l~~~~d~~i~lwd~~~~~~------~~~~~~~~~-~~~~---~~~~~v~~~~~~p~ 278 (409)
....+|..|+|. . ..++|++-....+.|+....... ....++..+ ..+. -.......++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 345678888886 2 12344444667777777321111 000010000 0011 11235678999998
Q ss_pred CCCEEEEEeCCCeEEEEeCCCccccc-cccccccccccccCCccccc-ccccceeeeEeccCCCEEEEeecCeEEEEEcc
Q 015290 279 YCNLLAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFT-EIIASISDIKFANDGQHLLSRDYMNLKLWDIR 356 (409)
Q Consensus 279 ~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~ 356 (409)
....||.....|...|||+....... ........ ..+. . .+. .....-..+.|.++-..|+.++...+.++|++
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~-~~gs--i-~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~ 232 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRN-ISGS--I-IFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFE 232 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccC-CCcc--c-cCCCcccCcceeeEecCCCCEEEEEcCCceEEEECC
Confidence 77899999999999999992211100 00111111 0000 0 011 01134457899988888888888899999998
Q ss_pred C
Q 015290 357 M 357 (409)
Q Consensus 357 ~ 357 (409)
.
T Consensus 233 ~ 233 (765)
T PF10214_consen 233 S 233 (765)
T ss_pred C
Confidence 5
No 470
>PRK13684 Ycf48-like protein; Provisional
Probab=70.21 E-value=80 Score=28.13 Aligned_cols=149 Identities=10% Similarity=0.050 Sum_probs=80.2
Q ss_pred ccceeEEEeCCCCCeEEEecCCeEEEE-EccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEe
Q 015290 218 DFNINSISNNSDCETFVSADDLRINLW-NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (409)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~~d~~i~lw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd 296 (409)
...+..+.+.|++.+++++..|.+..- +- .+.....+ ...-...++++.+.+++ ..++.+ ..|.+++=.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~--gg~tW~~~------~~~~~~~l~~i~~~~~g-~~~~vg-~~G~~~~~s 241 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEP--GQTAWTPH------QRNSSRRLQSMGFQPDG-NLWMLA-RGGQIRFND 241 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCC--CCCeEEEe------eCCCcccceeeeEcCCC-CEEEEe-cCCEEEEcc
Confidence 456788999999888877766765432 22 22222221 12234578899999998 776665 457654322
Q ss_pred CCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEccCCCcceEEEecccCcccccc
Q 015290 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLC 376 (409)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 376 (409)
...+. .|.. ...+.. .....+..+.+.|+++.+++|.+|.|.. ... .++.-...........
T Consensus 242 ~d~G~-------sW~~-~~~~~~-----~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d-~G~tW~~~~~~~~~~~--- 303 (334)
T PRK13684 242 PDDLE-------SWSK-PIIPEI-----TNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKD-GGKTWEKDPVGEEVPS--- 303 (334)
T ss_pred CCCCC-------cccc-ccCCcc-----ccccceeeEEEcCCCCEEEEcCCCeEEE-eCC-CCCCCeECCcCCCCCc---
Confidence 33332 1221 000000 0013577889999988888887776553 332 2444333322111100
Q ss_pred cccCCCCccceeeEEEcCCCCeEEEcc
Q 015290 377 DLYNNDSIFDKFECSVSGDGLHFATGS 403 (409)
Q Consensus 377 ~~~~~~~~~~v~~~~~spdg~~l~s~s 403 (409)
....+.|..+++.+++|.
T Consensus 304 ---------~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 304 ---------NFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred ---------ceEEEEEeCCCceEEECC
Confidence 014677777777666554
No 471
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=70.19 E-value=71 Score=27.56 Aligned_cols=110 Identities=9% Similarity=-0.041 Sum_probs=60.9
Q ss_pred eeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCC
Q 015290 221 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (409)
Q Consensus 221 v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~ 299 (409)
-.++.. .|++...+ .|.-+.+.|+.....+.-.= +.......-..++.+ | ++...+..|+-+.+-|+.+
T Consensus 131 aygv~v--sGn~aYVadlddgfLivdvsdpssP~lag-----rya~~~~d~~~v~IS--G-n~AYvA~~d~GL~ivDVSn 200 (370)
T COG5276 131 AYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAG-----RYALPGGDTHDVAIS--G-NYAYVAWRDGGLTIVDVSN 200 (370)
T ss_pred EEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeee-----eeccCCCCceeEEEe--c-CeEEEEEeCCCeEEEEccC
Confidence 344444 47888887 56677788987444332110 012222223566666 5 6666777888899999987
Q ss_pred ccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEeecCeEEEEEcc
Q 015290 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 356 (409)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~~~v~iwd~~ 356 (409)
... ..+-.| .. -...+.++..+++-.|++..+. .+.+-|..
T Consensus 201 p~s-----Pvli~~-~n---------~g~g~~sv~vsdnr~y~vvy~e-gvlivd~s 241 (370)
T COG5276 201 PHS-----PVLIGS-YN---------TGPGTYSVSVSDNRAYLVVYDE-GVLIVDVS 241 (370)
T ss_pred CCC-----CeEEEE-Ee---------cCCceEEEEecCCeeEEEEccc-ceEEEecC
Confidence 542 112110 00 0125677777777666665443 33444443
No 472
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=68.24 E-value=15 Score=19.06 Aligned_cols=24 Identities=8% Similarity=0.118 Sum_probs=19.9
Q ss_pred EEEEEeCCCeEEEEEcCCceeeee
Q 015290 129 MFILSTNDKTIKLWKVRDQKVKKI 152 (409)
Q Consensus 129 ~l~s~~~d~~i~iwd~~~~~~~~~ 152 (409)
.++.++.++.+..+|..+++....
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 677888899999999988877654
No 473
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=68.04 E-value=95 Score=28.14 Aligned_cols=103 Identities=11% Similarity=0.038 Sum_probs=57.9
Q ss_pred cceeEEEecCC----cccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCcee-eeeecCCCcCcCc
Q 015290 193 NMATKIANVGN----SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF-NIVDMKPSNMDDL 266 (409)
Q Consensus 193 ~~~i~~~~~~~----~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~-~~~~~~~~~~~~~ 266 (409)
+|.+.-|.+.. ....+.++.| .-...+..+.......+|+.+ .+.-|.-|+.+-..... ..+... .-...
T Consensus 180 ~G~~~Qy~L~~~~~g~v~~~lVR~f--~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~--~g~~l 255 (381)
T PF02333_consen 180 DGRVEQYELTDDGDGKVSATLVREF--KVGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASA--DGDGL 255 (381)
T ss_dssp TSEEEEEEEEE-TTSSEEEEEEEEE--E-SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEB--SSSSB
T ss_pred CceEEEEEEEeCCCCcEeeEEEEEe--cCCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecc--ccccc
Confidence 56555555532 2244566766 233467888888888899999 88878777776222111 111100 01224
Q ss_pred cCceEEEEEeC--CCC-CEEEEEeCCCeEEEEeCCC
Q 015290 267 TEVITSAEFHP--IYC-NLLAYSSSRGFVRLVDMRQ 299 (409)
Q Consensus 267 ~~~v~~~~~~p--~~~-~~l~s~s~dg~i~iwd~~~ 299 (409)
...|..|++-. ++. .+|++.-.+++..+||.+.
T Consensus 256 ~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 256 VADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp -S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred ccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 45677777743 332 3555555678999999875
No 474
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=67.67 E-value=50 Score=33.38 Aligned_cols=47 Identities=9% Similarity=0.169 Sum_probs=34.3
Q ss_pred ccceeeeEeccCCCEEEEe-ec-C-----eEEEEEccCCCcceEEEecccCccc
Q 015290 327 IASISDIKFANDGQHLLSR-DY-M-----NLKLWDIRMDSTPVATFKIHEHLRP 373 (409)
Q Consensus 327 ~~~i~~~~~s~~g~~l~sg-~~-~-----~v~iwd~~~~~~~~~~~~~~~~~~~ 373 (409)
..+|.+.+|||||+.||-+ +- + .|++-|+.+.+.-+..+......|+
T Consensus 349 ~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaip 402 (912)
T TIGR02171 349 TISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIP 402 (912)
T ss_pred CCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccccccc
Confidence 4578899999999999973 31 3 5999999876666566665555554
No 475
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=66.46 E-value=82 Score=26.82 Aligned_cols=193 Identities=11% Similarity=0.041 Sum_probs=95.8
Q ss_pred CcEEEEEECCCCCEEEEEecCC--eEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccc
Q 015290 33 DIVSAIEFDKTGDYLAVGDRGG--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (409)
Q Consensus 33 ~~v~~v~~~~~~~~la~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (409)
...-.+.|..+|.++-+.+.-| .|+.+|+.+++.. ....+...-
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~-------------------------~~~~l~~~~--------- 90 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVL-------------------------QSVPLPPRY--------- 90 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEE-------------------------EEEE-TTT----------
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEE-------------------------EEEECCccc---------
Confidence 4455788877888888877666 6888999887631 001111100
Q ss_pred eeccceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCceeeeeeccCCCcccccccccccccCceeccCCCCCceeecccc
Q 015290 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (409)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (409)
---.++. -+++.....-.++...+||..+-+......+.. ++--++ +.....+.+.+
T Consensus 91 ----FgEGit~---~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~------------EGWGLt---~dg~~Li~SDG- 147 (264)
T PF05096_consen 91 ----FGEGITI---LGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPG------------EGWGLT---SDGKRLIMSDG- 147 (264)
T ss_dssp -----EEEEEE---ETTEEEEEESSSSEEEEEETTTTEEEEEEE-SS------------S--EEE---ECSSCEEEE-S-
T ss_pred ----cceeEEE---ECCEEEEEEecCCeEEEEccccceEEEEEecCC------------cceEEE---cCCCEEEEECC-
Confidence 0111222 122233333445777888888766655544321 111111 11111111111
Q ss_pred cccceeEEEecCCcccceeeeeeccc-cccceeEEEeCCCCCeEEEe-cCCeEEEEEccCCCceeeeeecCCCc------
Q 015290 191 TENMATKIANVGNSVHARCQKVYPHA-HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN------ 262 (409)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~------ 262 (409)
...+.++|.++......+.....+ .-..++.|.+. +|...|=. ....|...|.. ++.....+++....
T Consensus 148 --S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~-tG~V~~~iDls~L~~~~~~~ 223 (264)
T PF05096_consen 148 --SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPE-TGKVVGWIDLSGLRPEVGRD 223 (264)
T ss_dssp --SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETT-T-BEEEEEE-HHHHHHHTST
T ss_pred --ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCC-CCeEEEEEEhhHhhhccccc
Confidence 225666666554333333322111 12245667776 56555556 77788888988 78887777654210
Q ss_pred --CcCccCceEEEEEeCCCCCEEEEE
Q 015290 263 --MDDLTEVITSAEFHPIYCNLLAYS 286 (409)
Q Consensus 263 --~~~~~~~v~~~~~~p~~~~~l~s~ 286 (409)
-....+-.+.++++|....+++||
T Consensus 224 ~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 224 KSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TST--TTS-EEEEEEETTTTEEEEEE
T ss_pred ccccccCCeeEeEeEeCCCCEEEEEe
Confidence 011135689999999885666666
No 476
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=64.54 E-value=32 Score=23.40 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=23.5
Q ss_pred ceeeeEeccCCCEEEEeec--CeEEEEEcc
Q 015290 329 SISDIKFANDGQHLLSRDY--MNLKLWDIR 356 (409)
Q Consensus 329 ~i~~~~~s~~g~~l~sg~~--~~v~iwd~~ 356 (409)
..+.+.++|++++|..++- +.|++|..+
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 4678999999999988863 999999875
No 477
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.23 E-value=2.2e+02 Score=30.31 Aligned_cols=158 Identities=10% Similarity=0.073 Sum_probs=79.7
Q ss_pred ccceeEEEecCCcccceeeeeeccccccceeEEEe--------CCCCCe-EEEecCCeEEEEEccCCCce--eeeeecCC
Q 015290 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISN--------NSDCET-FVSADDLRINLWNLEISDQC--FNIVDMKP 260 (409)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--------~~~~~~-l~~~~d~~i~lwd~~~~~~~--~~~~~~~~ 260 (409)
.|+.+.+|+.++..+.+... +....|..|.. .|.=++ |+.+.--.|.++-+...... ...+...
T Consensus 97 iDn~L~lWny~~~~e~~~~d----~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~- 171 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYD----GLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTS- 171 (1311)
T ss_pred eCCeEEEEEcCCCCcccccc----chhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccc-
Confidence 37889999998854444332 33334444433 222223 33343334555543311111 0010000
Q ss_pred CcCcCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCc-------cccccccccccc--cccccCCccccccccccee
Q 015290 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS-------ALCDHSARILRD--AAESHGSKSFFTEIIASIS 331 (409)
Q Consensus 261 ~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~ 331 (409)
..+.-....|.++....+| +.|++|- || .+|.+.-. +.|.+. ..-.. ..--|...+.+..+..+|.
T Consensus 172 ~~i~~dg~~V~~I~~t~nG-RIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Ki-clt~s~ls~lvPs~~~~~~~~~dpI~ 246 (1311)
T KOG1900|consen 172 FKISVDGVSVNCITYTENG-RIFFAGR-DG--NLYELVYQAEDGWFGSRCRKI-CLTKSVLSSLVPSLLSVPGSSKDPIR 246 (1311)
T ss_pred eeeecCCceEEEEEeccCC-cEEEeec-CC--CEEEEEEeccCchhhcccccc-cCchhHHHHhhhhhhcCCCCCCCcce
Confidence 0112224568889888888 8877664 55 45543221 101000 00000 0001111122235677999
Q ss_pred eeEeccCCCEEEEeec-CeEEEEEccCCC
Q 015290 332 DIKFANDGQHLLSRDY-MNLKLWDIRMDS 359 (409)
Q Consensus 332 ~~~~s~~g~~l~sg~~-~~v~iwd~~~~~ 359 (409)
.++....-..+.+-+. +.|.+||+..+|
T Consensus 247 qi~ID~SR~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 247 QITIDNSRNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred eeEeccccceeeeeccCceEEEEEccCCC
Confidence 9999988788888876 999999997644
No 478
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=62.08 E-value=1.5e+02 Score=28.43 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=21.5
Q ss_pred CEEEEEeCCCeEEEEEcCCceeeeeec
Q 015290 128 SMFILSTNDKTIKLWKVRDQKVKKIKE 154 (409)
Q Consensus 128 ~~l~s~~~d~~i~iwd~~~~~~~~~~~ 154 (409)
..++.++.|+.+.-.|..+++......
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 467778889999999999998876543
No 479
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=61.15 E-value=31 Score=23.65 Aligned_cols=38 Identities=11% Similarity=-0.063 Sum_probs=24.5
Q ss_pred CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEc
Q 015290 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402 (409)
Q Consensus 348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~ 402 (409)
|.+.-||..+ ++....+.+-.-+ ..++.++|+.+|+.+
T Consensus 37 GRll~ydp~t-~~~~vl~~~L~fp----------------NGVals~d~~~vlv~ 74 (89)
T PF03088_consen 37 GRLLRYDPST-KETTVLLDGLYFP----------------NGVALSPDESFVLVA 74 (89)
T ss_dssp EEEEEEETTT-TEEEEEEEEESSE----------------EEEEE-TTSSEEEEE
T ss_pred cCEEEEECCC-CeEEEehhCCCcc----------------CeEEEcCCCCEEEEE
Confidence 7888899875 4443344433333 489999999976653
No 480
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=59.48 E-value=37 Score=28.54 Aligned_cols=61 Identities=16% Similarity=0.107 Sum_probs=36.2
Q ss_pred eeeeEeccCCCEEEEeec----CeEEEEEccC-CCcce-EEEe---cccCcccccccccCCCCccceeeEEEcCCCCeEE
Q 015290 330 ISDIKFANDGQHLLSRDY----MNLKLWDIRM-DSTPV-ATFK---IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA 400 (409)
Q Consensus 330 i~~~~~s~~g~~l~sg~~----~~v~iwd~~~-~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 400 (409)
..+-++-+||++|.+|++ ..+++++... +..+- .... ....+- -++..-|||+.|+
T Consensus 69 CSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY---------------pT~~~L~DG~vlI 133 (243)
T PF07250_consen 69 CSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWY---------------PTATTLPDGRVLI 133 (243)
T ss_pred ccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcc---------------ccceECCCCCEEE
Confidence 344567899999999864 5688888643 11111 1100 111111 2566678999999
Q ss_pred EcccC
Q 015290 401 TGSYR 405 (409)
Q Consensus 401 s~s~d 405 (409)
.|+.+
T Consensus 134 vGG~~ 138 (243)
T PF07250_consen 134 VGGSN 138 (243)
T ss_pred EeCcC
Confidence 88865
No 481
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=59.40 E-value=22 Score=17.93 Aligned_cols=25 Identities=12% Similarity=0.013 Sum_probs=16.3
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEE
Q 015290 270 ITSAEFHPIYCNLLAYSSSRGFVRLV 295 (409)
Q Consensus 270 v~~~~~~p~~~~~l~s~s~dg~i~iw 295 (409)
...++++++| +++++=+....|.+|
T Consensus 4 P~gvav~~~g-~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDG-NIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTS-EEEEEECCCTEEEEE
T ss_pred CcEEEEeCCC-CEEEEECCCCEEEEC
Confidence 4677777777 766666666666553
No 482
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=58.98 E-value=1.5e+02 Score=29.71 Aligned_cols=133 Identities=12% Similarity=0.138 Sum_probs=73.3
Q ss_pred cceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEEEe-cCCeEEE--------EEccCCCceeeeeecCCCcC
Q 015290 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINL--------WNLEISDQCFNIVDMKPSNM 263 (409)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~l--------wd~~~~~~~~~~~~~~~~~~ 263 (409)
.+.+.++.-......++...+.......+.++.+++.. +..| .||++-. ||.. .... +
T Consensus 556 ~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~S--lgagl~dgt~a~y~rap~gSwd~e-p~~~----------~ 622 (925)
T KOG3522|consen 556 TSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGS--LGAGLIDGTLAVYGRAPSGSWDGE-PNIS----------I 622 (925)
T ss_pred cceeEEeeccCCcccceeccCCCCchhhhhhhhccccc--cccCccCCccccccCCCCCCCCCC-Cccc----------c
Confidence 45666665543333333333334444556666665432 3334 5555444 4443 2211 1
Q ss_pred cCccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEE
Q 015290 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (409)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 343 (409)
.....+|.+.++..| +..++.+|.+.++...+.... .....| ..|...|+.+.....|-+++
T Consensus 623 ~~g~lPvrsla~~ed----~~was~gG~V~vi~~tt~~~~----~~leah----------qee~~~Vthm~~~~~gVwva 684 (925)
T KOG3522|consen 623 PTGSLPVRSLAFQED----FVWASEGGCVHVIPSTTFIRS----WDLEAH----------QEEAHSVTHMLYLDNGVWVA 684 (925)
T ss_pred ccCCccccchhhhhc----eeeeecCCceEEEechhcccc----chhHHH----------HhhcceEEEEEeeCCceEEE
Confidence 223456788887754 445678999999987764321 112221 22346899999998888887
Q ss_pred EeecCeEEEEEcc
Q 015290 344 SRDYMNLKLWDIR 356 (409)
Q Consensus 344 sg~~~~v~iwd~~ 356 (409)
-.+...+++++..
T Consensus 685 fasG~~~rlfhte 697 (925)
T KOG3522|consen 685 FASGDEERLFHTE 697 (925)
T ss_pred EcCCCEEEEeccc
Confidence 6654555555543
No 483
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=57.82 E-value=1.4e+02 Score=26.79 Aligned_cols=38 Identities=13% Similarity=-0.032 Sum_probs=23.4
Q ss_pred CeEEEEEccCCCcceEEEecccCcccccccccCCCCccceeeEEEcCCCCeEEEc
Q 015290 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402 (409)
Q Consensus 348 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s~ 402 (409)
|++.-||..+ +...++...-... ..++.|||+.+++.+
T Consensus 199 GRl~~YD~~t--K~~~VLld~L~F~---------------NGlaLS~d~sfvl~~ 236 (376)
T KOG1520|consen 199 GRLFRYDPST--KVTKVLLDGLYFP---------------NGLALSPDGSFVLVA 236 (376)
T ss_pred cceEEecCcc--cchhhhhhccccc---------------ccccCCCCCCEEEEE
Confidence 8888888764 3333332211111 379999999987765
No 484
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.63 E-value=2.5e+02 Score=29.53 Aligned_cols=33 Identities=12% Similarity=0.304 Sum_probs=25.7
Q ss_pred cceEEEEEEecCCCCEEEEEeCCCeEEEEEcCCce
Q 015290 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK 148 (409)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~ 148 (409)
.....++| ++.-+.++.+...|.|+++-...-+
T Consensus 36 ~~~~~~af--D~~q~llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 36 STPSALAF--DPTQGLLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCCcceee--ccccceEEEEEecccEEEecccceE
Confidence 45566777 7888899999999999998665433
No 485
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=57.50 E-value=2.1e+02 Score=28.67 Aligned_cols=70 Identities=13% Similarity=0.026 Sum_probs=41.4
Q ss_pred EEEEEeCCCCCEEEEEeCCC-----eEEEEeCCCccccccccccccccccccCCcccccccccceeeeEeccCCCEEEEe
Q 015290 271 TSAEFHPIYCNLLAYSSSRG-----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (409)
Q Consensus 271 ~~~~~~p~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg 345 (409)
..++|-|.| ..+++-+.|| .|.++....-+. ..+.. + .+-+.....++|+-....++.+
T Consensus 250 ~~LSWkpqg-S~~ati~td~~~~S~~ViFfErNGLrH-----Gef~l-------r---~~~dEk~~~~~wn~~s~vlav~ 313 (1243)
T COG5290 250 HQLSWKPQG-SKYATIGTDGCSTSESVIFFERNGLRH-----GEFDL-------R---VGCDEKAFLENWNLLSTVLAVA 313 (1243)
T ss_pred hccccccCC-ceeeeeccCCCCCcceEEEEccCCccc-----CCccc-------c---CCchhhhhhhhhhHHHHHHHHh
Confidence 458999999 8888876554 355554322110 00000 0 0112356667787766666666
Q ss_pred ecCeEEEEEcc
Q 015290 346 DYMNLKLWDIR 356 (409)
Q Consensus 346 ~~~~v~iwd~~ 356 (409)
..+.|++|-..
T Consensus 314 ~~n~~~lwttk 324 (1243)
T COG5290 314 EGNLLKLWTTK 324 (1243)
T ss_pred hcceEEEEEcc
Confidence 66899999864
No 486
>PHA02790 Kelch-like protein; Provisional
Probab=57.00 E-value=1.8e+02 Score=27.57 Aligned_cols=62 Identities=11% Similarity=-0.024 Sum_probs=30.8
Q ss_pred CCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeCC-----CeEEEEeCCCcc
Q 015290 229 DCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSA 301 (409)
Q Consensus 229 ~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d-----g~i~iwd~~~~~ 301 (409)
+++..+.| |.+.+||.. +.+-...-+ +....... +++. -++ ++.+.|+.+ ..+..||..+++
T Consensus 407 ~~~IYv~G--G~~e~ydp~-~~~W~~~~~-----m~~~r~~~-~~~v-~~~-~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 407 GRRLFLVG--RNAEFYCES-SNTWTLIDD-----PIYPRDNP-ELII-VDN-KLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCEEEEEC--CceEEecCC-CCcEeEcCC-----CCCCcccc-EEEE-ECC-EEEEECCcCCCcccceEEEEECCCCe
Confidence 45555555 346678876 333222211 11111222 2222 245 777777754 356777776654
No 487
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=56.61 E-value=82 Score=23.58 Aligned_cols=64 Identities=6% Similarity=0.110 Sum_probs=38.5
Q ss_pred CCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCC--CCEEEEEeCCCeEEEEeCCCcc
Q 015290 229 DCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY--CNLLAYSSSRGFVRLVDMRQSA 301 (409)
Q Consensus 229 ~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~s~s~dg~i~iwd~~~~~ 301 (409)
+...|+.|....+..||+......+ .+.-.+.+.++.+-.-+ +.-++..+.+..|.-||....+
T Consensus 63 ~~D~LliGt~t~llaYDV~~N~d~F---------yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 63 GRDCLLIGTQTSLLAYDVENNSDLF---------YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred CcCEEEEeccceEEEEEcccCchhh---------hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 3567888888889999998444433 23344667777764222 1234444445667777765543
No 488
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=55.56 E-value=32 Score=23.41 Aligned_cols=31 Identities=13% Similarity=0.256 Sum_probs=24.0
Q ss_pred CcEEEEEECCCCCEEEEEe-cCCeEEEEeccC
Q 015290 33 DIVSAIEFDKTGDYLAVGD-RGGRVILFETVG 63 (409)
Q Consensus 33 ~~v~~v~~~~~~~~la~~~-~dg~i~iw~~~~ 63 (409)
..-+.|.++|++++|.+++ ..+.|.+|..+.
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 3456789999999887776 567899998653
No 489
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=54.12 E-value=35 Score=18.65 Aligned_cols=28 Identities=14% Similarity=0.016 Sum_probs=22.4
Q ss_pred EEEEEeCCCeEEEEEcCCceeeeeeccC
Q 015290 129 MFILSTNDKTIKLWKVRDQKVKKIKEMD 156 (409)
Q Consensus 129 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 156 (409)
.++.++.||.|.-.|.++|+.+......
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 4566689999999999999988876543
No 490
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=54.07 E-value=48 Score=32.47 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=30.0
Q ss_pred CccCceEEEEEeCCCCCEEEEEeCCCeEEEEeCCCcc
Q 015290 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA 301 (409)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~s~s~dg~i~iwd~~~~~ 301 (409)
.....++++.-+|.+ +.++.++.||.|++|+.....
T Consensus 12 k~~e~~~aiqshp~~-~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 12 KEDEFTTAIQSHPGG-QSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred cccceeeeeeecCCC-ceEEEEecCCcEEEEeecccc
Confidence 345667889999999 999999999999999986543
No 491
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=53.26 E-value=2.5e+02 Score=28.21 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=25.3
Q ss_pred CCcEEEEEECCCCCEEEEEecCCeEEEEecc
Q 015290 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETV 62 (409)
Q Consensus 32 ~~~v~~v~~~~~~~~la~~~~dg~i~iw~~~ 62 (409)
.+.|-+.+||.|.+.++....+..|.+++-.
T Consensus 112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~ 142 (1243)
T COG5290 112 SNGIVAASWSADEKTWCVVTSTREILLFDKY 142 (1243)
T ss_pred cCceEEEeeccCCceEEEEEcCceEEEEecc
Confidence 5678899999999988777778888888743
No 492
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=52.70 E-value=52 Score=20.14 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=16.2
Q ss_pred cEEEEEECCCCCEEEEEec
Q 015290 34 IVSAIEFDKTGDYLAVGDR 52 (409)
Q Consensus 34 ~v~~v~~~~~~~~la~~~~ 52 (409)
.+.+++.-|||++|+.|..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 5788999999999998863
No 493
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=51.63 E-value=59 Score=28.05 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=37.7
Q ss_pred CeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEe------CCCeEEEEeCCCcc
Q 015290 239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS------SRGFVRLVDMRQSA 301 (409)
Q Consensus 239 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s------~dg~i~iwd~~~~~ 301 (409)
..|++||.. ..+-... ..+-.+.|+++.|..+. ++++.|. ....+..||..+..
T Consensus 16 ~~lC~yd~~-~~qW~~~-------g~~i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 16 PGLCLYDTD-NSQWSSP-------GNGISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred CEEEEEECC-CCEeecC-------CCCceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCe
Confidence 468899987 4443332 33456789999998666 7777775 35568889988754
No 494
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=51.52 E-value=1.9e+02 Score=26.29 Aligned_cols=105 Identities=8% Similarity=0.021 Sum_probs=57.2
Q ss_pred CeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEe--C-CCCCEEEEEeCCCeEEEEeCCC---ccccccccccccc
Q 015290 239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--P-IYCNLLAYSSSRGFVRLVDMRQ---SALCDHSARILRD 312 (409)
Q Consensus 239 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p-~~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~~~~~ 312 (409)
.+|++|.+......+..+.-....+......++.+++- | +|..+++....+|.+..|.+.. +......++.|..
T Consensus 127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~ 206 (381)
T PF02333_consen 127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV 206 (381)
T ss_dssp -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence 46888887622223332211000011112346777764 3 3424666677889888887752 2222223344444
Q ss_pred cccccCCcccccccccceeeeEeccCCCEEEEeec-CeEEEEEccC
Q 015290 313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM 357 (409)
Q Consensus 313 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~sg~~-~~v~iwd~~~ 357 (409)
.+.+..|.......+|..|.+ .-|.-|+.+.
T Consensus 207 --------------~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep 238 (381)
T PF02333_consen 207 --------------GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEP 238 (381)
T ss_dssp --------------SS-EEEEEEETTTTEEEEEETTTEEEEEESSC
T ss_pred --------------CCcceEEEEecccCCEEEecCccEEEEEecCC
Confidence 346888888888888988875 6677777763
No 495
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=49.36 E-value=1.8e+02 Score=25.43 Aligned_cols=124 Identities=8% Similarity=-0.010 Sum_probs=68.1
Q ss_pred eeEEEeCCCCCeEEEe-cCCeEEEEEccC-----CCceeeeeecCCCcCcCccCceEEEEEeCCC-----------CCEE
Q 015290 221 INSISNNSDCETFVSA-DDLRINLWNLEI-----SDQCFNIVDMKPSNMDDLTEVITSAEFHPIY-----------CNLL 283 (409)
Q Consensus 221 v~~l~~~~~~~~l~~~-~d~~i~lwd~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----------~~~l 283 (409)
-+.|+++|.+.+-++. .-+...+||... ..+.+. +.++...-.......+.+.|+... +..|
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~-vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLV-VVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceE-EEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 4689999999888887 888999999861 122221 111110011123456777776432 1246
Q ss_pred EEEeCCCeEEEEeCCCcccc-ccccccccccccccCCcccccccccceeeeEeccC--CCEEEEee-c-CeEEEEEcc
Q 015290 284 AYSSSRGFVRLVDMRQSALC-DHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRD-Y-MNLKLWDIR 356 (409)
Q Consensus 284 ~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--g~~l~sg~-~-~~v~iwd~~ 356 (409)
+.+++||+|.-|...-+... ......+.. +. -...-..+++... +.+|..+. . ++|.++|-.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~---s~--------~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDA---SQ--------QGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEcc---CC--------CcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 77889999999985332210 000011111 00 0112234555433 57777775 3 999999865
No 496
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=48.71 E-value=2.4e+02 Score=26.68 Aligned_cols=134 Identities=13% Similarity=0.005 Sum_probs=60.7
Q ss_pred EEeCCCCCeEEEecCCeEEEEEccCCCceeeeeecCCCcCcCccCceEEEEEeCCCCCEEEEEeC-------------CC
Q 015290 224 ISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-------------RG 290 (409)
Q Consensus 224 l~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~-------------dg 290 (409)
+...++|.+++... ..+..+|+. ++.+....+......-| ..+...|+| ++|+.+.. +-
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~--G~v~~~~~l~~~~~~~H----HD~~~l~nG-n~L~l~~~~~~~~~~~~~~~~~D 224 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLL--GKVIWEYDLPGGYYDFH----HDIDELPNG-NLLILASETKYVDEDKDVDTVED 224 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT----EEEEEE--TTEE-B-----S-EEE-TTS--EEEEEEETTEE-TS-EE---S-
T ss_pred eeEcCCCCEEEecC-CceEEEcCC--CCEEEeeecCCcccccc----cccEECCCC-CEEEEEeecccccCCCCccEecC
Confidence 55667887665434 777788876 55555543332111112 356677888 88777661 12
Q ss_pred eEEEEeCCCcccccccccccccccccc--CC-----------ccc--ccccccceeeeEecc-CCCEEEEeec-CeEEEE
Q 015290 291 FVRLVDMRQSALCDHSARILRDAAESH--GS-----------KSF--FTEIIASISDIKFAN-DGQHLLSRDY-MNLKLW 353 (409)
Q Consensus 291 ~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~--~~~~~~~i~~~~~s~-~g~~l~sg~~-~~v~iw 353 (409)
.|..+| .+|+.. ..|.. .+.. .. ... -...-.-++++.+.+ ++.+|+++-. ..|...
T Consensus 225 ~Ivevd-~tG~vv----~~wd~-~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~I 298 (477)
T PF05935_consen 225 VIVEVD-PTGEVV----WEWDF-FDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKI 298 (477)
T ss_dssp EEEEE--TTS-EE----EEEEG-GGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEE
T ss_pred EEEEEC-CCCCEE----EEEeh-HHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEE
Confidence 355555 555431 22221 0000 00 000 001112478889988 6667777765 788888
Q ss_pred EccCCCcceEEEecccCcc
Q 015290 354 DIRMDSTPVATFKIHEHLR 372 (409)
Q Consensus 354 d~~~~~~~~~~~~~~~~~~ 372 (409)
|.++ ++..-.+..+..+.
T Consensus 299 d~~t-~~i~Wilg~~~~w~ 316 (477)
T PF05935_consen 299 DYRT-GKIKWILGPPGGWN 316 (477)
T ss_dssp E-TT-S-EEEEES-STT--
T ss_pred ECCC-CcEEEEeCCCCCCC
Confidence 9765 77777776665544
No 497
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=45.20 E-value=38 Score=18.70 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=15.7
Q ss_pred CCCEEEEEeCCCeEEEEEcCC
Q 015290 126 NGSMFILSTNDKTIKLWKVRD 146 (409)
Q Consensus 126 ~~~~l~s~~~d~~i~iwd~~~ 146 (409)
.+..++.++.|+.+..+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 355888999999999998753
No 498
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=43.25 E-value=4.6e+02 Score=28.36 Aligned_cols=74 Identities=16% Similarity=0.257 Sum_probs=40.8
Q ss_pred eeeEeccCCCEEEEeec-Ce-EEEEEccCCCcceEEEecccCccc----ccccccC------CCC-ccceeeEEEcCCCC
Q 015290 331 SDIKFANDGQHLLSRDY-MN-LKLWDIRMDSTPVATFKIHEHLRP----KLCDLYN------NDS-IFDKFECSVSGDGL 397 (409)
Q Consensus 331 ~~~~~s~~g~~l~sg~~-~~-v~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~------~~~-~~~v~~~~~spdg~ 397 (409)
.+++++++|.+.++-+| .. =++=.+.+++ .+..+.|....-. ..|+.+. .+. ...+.++|.+|||.
T Consensus 596 r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg-~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~ 674 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESDGRRINRVRKLSTDG-TISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGD 674 (1899)
T ss_pred hceeecCCceEEEEeccchhhhheEEeccCc-eEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCc
Confidence 78899999987777665 22 2333344434 5555555443321 1122221 111 12357899999999
Q ss_pred eEEEcccC
Q 015290 398 HFATGSYR 405 (409)
Q Consensus 398 ~l~s~s~d 405 (409)
.++.-+.+
T Consensus 675 v~IAD~gN 682 (1899)
T KOG4659|consen 675 VIIADSGN 682 (1899)
T ss_pred EEEecCCc
Confidence 77765443
No 499
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=42.45 E-value=2.4e+02 Score=24.75 Aligned_cols=136 Identities=14% Similarity=0.107 Sum_probs=0.0
Q ss_pred EEEEEECCCCCEEEEEecCCeEEEEeccCCcCCCCccchhhhhhhcccccccCCCceeeeeeecCCCccccccccceecc
Q 015290 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (409)
Q Consensus 35 v~~v~~~~~~~~la~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (409)
|++|...++|.+|++.-.-..|.+.+-.+++ .+-.+.|.. +
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~---------------------------I~W~lgG~~------------~ 186 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGK---------------------------IIWRLGGKR------------N 186 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCc---------------------------EEEEeCCCC------------C
Q ss_pred ceEE-----EEEEecCCCCEEEEEeCCCeEEEEEc-------CCceeeeeeccCCCccccccccccc-ccCceeccCCCC
Q 015290 115 KINR-----VRWCAAPNGSMFILSTNDKTIKLWKV-------RDQKVKKIKEMDHFPFVSSENTLLA-EKNFMNEHNPPS 181 (409)
Q Consensus 115 ~v~~-----l~~~~s~~~~~l~s~~~d~~i~iwd~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 181 (409)
.=.. .+| ..+-+.+-....+++|.++|- .....-....++.......+..... ....+.+...++
T Consensus 187 ~df~~~~~~f~~--QHdar~~~~~~~~~~IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~ 264 (299)
T PF14269_consen 187 SDFTLPATNFSW--QHDARFLNESNDDGTISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGS 264 (299)
T ss_pred CcccccCCcEee--ccCCEEeccCCCCCEEEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCc
Q ss_pred CceeecccccccceeEEEecCCcccceeeeeeccccccceeEEEeCCCCCeEE
Q 015290 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV 234 (409)
Q Consensus 182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 234 (409)
.+.++.+.. +-+....-.-..+.++|+.+.
T Consensus 265 ~Q~L~nGn~-----------------------li~~g~~g~~~E~~~~G~vv~ 294 (299)
T PF14269_consen 265 AQRLPNGNV-----------------------LIGWGNNGRISEFTPDGEVVW 294 (299)
T ss_pred ceECCCCCE-----------------------EEecCCCceEEEECCCCCEEE
No 500
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=39.76 E-value=8.3 Score=18.65 Aligned_cols=9 Identities=33% Similarity=0.331 Sum_probs=6.7
Q ss_pred EEEcCCCCe
Q 015290 390 CSVSGDGLH 398 (409)
Q Consensus 390 ~~~spdg~~ 398 (409)
-.|||+|++
T Consensus 6 t~FSp~Grl 14 (23)
T PF10584_consen 6 TTFSPDGRL 14 (23)
T ss_dssp TSBBTTSSB
T ss_pred eeECCCCeE
Confidence 358899875
Done!