Query 015291
Match_columns 409
No_of_seqs 243 out of 1843
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 04:55:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015291.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015291hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02237 glyceraldehyde-3-phos 100.0 5E-129 1E-133 990.7 35.0 397 3-409 1-398 (442)
2 PLN03096 glyceraldehyde-3-phos 100.0 1E-117 3E-122 900.8 33.7 370 33-409 11-380 (395)
3 PTZ00434 cytosolic glyceraldeh 100.0 5E-117 1E-121 884.6 29.2 324 84-409 1-341 (361)
4 PRK07403 glyceraldehyde-3-phos 100.0 4E-113 9E-118 854.6 32.1 321 87-409 2-322 (337)
5 PRK15425 gapA glyceraldehyde-3 100.0 7E-112 2E-116 844.5 32.6 318 85-409 1-319 (331)
6 PTZ00023 glyceraldehyde-3-phos 100.0 4E-111 9E-116 840.9 31.7 319 85-409 1-323 (337)
7 PRK07729 glyceraldehyde-3-phos 100.0 3E-110 7E-115 835.0 31.9 320 85-409 1-320 (343)
8 PLN02272 glyceraldehyde-3-phos 100.0 1E-108 3E-113 839.6 36.6 317 87-409 86-404 (421)
9 TIGR01534 GAPDH-I glyceraldehy 100.0 6E-108 1E-112 816.6 32.7 318 88-409 1-322 (327)
10 COG0057 GapA Glyceraldehyde-3- 100.0 5E-108 1E-112 807.3 30.9 319 86-409 1-320 (335)
11 PRK13535 erythrose 4-phosphate 100.0 2E-107 3E-112 815.7 31.6 319 87-409 2-322 (336)
12 PRK08955 glyceraldehyde-3-phos 100.0 2E-107 3E-112 815.4 29.7 319 85-409 1-320 (334)
13 PLN02358 glyceraldehyde-3-phos 100.0 8E-107 2E-111 811.4 33.3 318 86-409 5-325 (338)
14 PTZ00353 glycosomal glyceralde 100.0 2E-106 4E-111 808.0 31.2 316 85-409 1-323 (342)
15 PRK08289 glyceraldehyde-3-phos 100.0 5E-105 1E-109 816.6 30.8 320 86-409 127-458 (477)
16 TIGR01532 E4PD_g-proteo D-eryt 100.0 2E-104 4E-109 792.1 33.2 318 88-409 1-320 (325)
17 KOG0657 Glyceraldehyde 3-phosp 100.0 1.3E-77 2.8E-82 575.2 12.4 270 97-409 1-272 (285)
18 TIGR01546 GAPDH-II_archae glyc 100.0 9E-55 1.9E-59 434.9 23.0 236 89-355 1-243 (333)
19 PF02800 Gp_dh_C: Glyceraldehy 100.0 2.5E-51 5.5E-56 371.4 12.0 157 245-402 1-157 (157)
20 PRK04207 glyceraldehyde-3-phos 100.0 5.2E-47 1.1E-51 381.1 21.8 260 86-379 1-273 (341)
21 PF00044 Gp_dh_N: Glyceraldehy 100.0 1.2E-47 2.6E-52 345.4 12.5 150 87-240 1-151 (151)
22 PRK06901 aspartate-semialdehyd 100.0 2.3E-43 5.1E-48 349.5 19.9 234 86-354 3-254 (322)
23 smart00846 Gp_dh_N Glyceraldeh 100.0 1.6E-42 3.4E-47 311.5 16.6 149 87-240 1-149 (149)
24 PRK14874 aspartate-semialdehyd 100.0 5.4E-40 1.2E-44 329.1 20.3 233 87-353 2-268 (334)
25 TIGR01745 asd_gamma aspartate- 100.0 4.4E-40 9.5E-45 332.3 18.4 236 87-354 1-298 (366)
26 TIGR01296 asd_B aspartate-semi 100.0 9.2E-40 2E-44 328.4 20.2 235 88-354 1-272 (339)
27 COG0136 Asd Aspartate-semialde 100.0 3.9E-39 8.5E-44 320.2 22.2 236 86-351 1-266 (334)
28 PRK06728 aspartate-semialdehyd 100.0 5.8E-36 1.3E-40 301.2 21.9 235 86-354 5-277 (347)
29 PRK06598 aspartate-semialdehyd 100.0 6.3E-36 1.4E-40 302.8 19.9 237 87-354 2-300 (369)
30 PRK08040 putative semialdehyde 100.0 1.6E-31 3.5E-36 268.4 25.8 235 85-353 3-267 (336)
31 PLN02383 aspartate semialdehyd 100.0 3.3E-31 7.2E-36 267.0 20.5 238 82-353 3-276 (344)
32 PRK05671 aspartate-semialdehyd 100.0 1.2E-30 2.6E-35 262.2 22.5 235 86-353 4-268 (336)
33 TIGR00978 asd_EA aspartate-sem 100.0 2.6E-30 5.7E-35 259.8 21.3 258 87-372 1-282 (341)
34 PRK08664 aspartate-semialdehyd 100.0 2E-29 4.3E-34 254.2 23.2 244 84-355 1-268 (349)
35 PRK00436 argC N-acetyl-gamma-g 99.9 7.5E-25 1.6E-29 220.7 23.9 237 85-354 1-264 (343)
36 PLN02968 Probable N-acetyl-gam 99.9 3.1E-23 6.8E-28 211.8 22.6 239 84-353 36-301 (381)
37 TIGR01850 argC N-acetyl-gamma- 99.9 4.3E-23 9.4E-28 208.2 21.0 237 87-354 1-267 (346)
38 KOG4777 Aspartate-semialdehyde 99.9 4.7E-22 1E-26 190.8 10.4 239 88-355 5-278 (361)
39 PRK11863 N-acetyl-gamma-glutam 99.9 9.8E-21 2.1E-25 188.8 20.0 221 85-355 1-237 (313)
40 TIGR01851 argC_other N-acetyl- 99.8 2.5E-17 5.3E-22 164.0 19.0 220 87-354 2-237 (310)
41 PRK08300 acetaldehyde dehydrog 99.5 2.2E-14 4.7E-19 142.6 8.0 165 86-279 4-172 (302)
42 TIGR03215 ac_ald_DH_ac acetald 99.3 5.9E-12 1.3E-16 124.5 10.5 160 86-280 1-167 (285)
43 COG0002 ArgC Acetylglutamate s 99.1 2.8E-09 6.2E-14 107.3 19.1 237 85-356 1-272 (349)
44 PF01118 Semialdhyde_dh: Semia 99.0 3.3E-10 7.2E-15 97.8 3.8 113 88-228 1-119 (121)
45 PF02774 Semialdhyde_dhC: Semi 98.9 2.2E-09 4.8E-14 99.5 8.1 103 249-353 1-132 (184)
46 smart00859 Semialdhyde_dh Semi 98.2 3.3E-06 7.2E-11 72.5 6.6 113 88-227 1-120 (122)
47 PRK13301 putative L-aspartate 98.1 5.7E-06 1.2E-10 81.3 6.1 146 85-271 1-151 (267)
48 TIGR01921 DAP-DH diaminopimela 97.9 0.00018 3.9E-09 72.8 13.0 213 86-354 3-220 (324)
49 KOG4354 N-acetyl-gamma-glutamy 97.7 0.00028 6E-09 68.8 10.4 260 79-379 12-285 (340)
50 PRK13303 L-aspartate dehydroge 97.6 8E-05 1.7E-09 73.0 5.9 88 87-206 2-90 (265)
51 PRK06270 homoserine dehydrogen 97.4 0.00049 1.1E-08 69.8 8.1 153 85-267 1-176 (341)
52 COG1712 Predicted dinucleotide 97.4 0.00053 1.1E-08 66.2 7.3 93 87-209 1-93 (255)
53 TIGR00036 dapB dihydrodipicoli 97.3 0.00043 9.2E-09 68.0 5.6 95 87-206 2-97 (266)
54 PRK13302 putative L-aspartate 97.2 0.0013 2.7E-08 64.9 8.0 88 86-202 6-93 (271)
55 PRK13304 L-aspartate dehydroge 97.1 0.0015 3.3E-08 64.0 7.7 89 87-206 2-90 (265)
56 PF01113 DapB_N: Dihydrodipico 97.1 0.00093 2E-08 58.1 5.2 92 87-202 1-93 (124)
57 PRK00048 dihydrodipicolinate r 97.0 0.0013 2.9E-08 64.1 6.1 87 87-206 2-89 (257)
58 PRK06349 homoserine dehydrogen 96.9 0.0013 2.8E-08 68.8 5.3 93 86-208 3-103 (426)
59 COG0460 ThrA Homoserine dehydr 96.8 0.0027 5.8E-08 64.6 7.0 38 84-121 1-45 (333)
60 PRK08374 homoserine dehydrogen 96.8 0.0028 6E-08 64.4 6.7 108 85-208 1-121 (336)
61 PRK06392 homoserine dehydrogen 96.8 0.0036 7.9E-08 63.5 7.4 35 87-121 1-40 (326)
62 PF01408 GFO_IDH_MocA: Oxidore 96.7 0.0053 1.1E-07 51.7 6.5 93 87-209 1-94 (120)
63 COG0289 DapB Dihydrodipicolina 96.6 0.0082 1.8E-07 59.2 8.5 97 85-206 1-98 (266)
64 PRK06813 homoserine dehydrogen 96.6 0.0032 6.9E-08 64.4 5.6 37 85-121 1-44 (346)
65 COG4569 MhpF Acetaldehyde dehy 96.1 0.018 4E-07 55.1 7.5 73 176-254 71-144 (310)
66 PRK11579 putative oxidoreducta 96.1 0.02 4.3E-07 57.7 8.3 92 86-209 4-96 (346)
67 PRK05447 1-deoxy-D-xylulose 5- 96.0 0.027 5.8E-07 58.5 8.3 111 87-206 2-120 (385)
68 cd01076 NAD_bind_1_Glu_DH NAD( 95.7 0.11 2.4E-06 50.1 11.1 35 84-121 29-63 (227)
69 PRK09414 glutamate dehydrogena 95.6 0.042 9E-07 58.1 8.2 99 86-206 232-341 (445)
70 PF03447 NAD_binding_3: Homose 95.6 0.0017 3.7E-08 55.3 -1.9 87 93-208 1-89 (117)
71 PLN02696 1-deoxy-D-xylulose-5- 95.5 0.21 4.6E-06 52.9 13.1 111 87-208 58-180 (454)
72 PLN02775 Probable dihydrodipic 95.4 0.042 9.1E-07 54.9 6.9 96 84-204 9-108 (286)
73 cd05211 NAD_bind_Glu_Leu_Phe_V 95.0 0.23 5E-06 47.6 10.5 34 85-121 22-55 (217)
74 PLN02700 homoserine dehydrogen 94.9 0.052 1.1E-06 56.3 6.2 37 85-121 2-44 (377)
75 PRK10206 putative oxidoreducta 94.8 0.056 1.2E-06 54.8 6.3 94 86-209 1-96 (344)
76 cd05313 NAD_bind_2_Glu_DH NAD( 94.4 0.19 4E-06 49.6 8.4 104 86-207 38-152 (254)
77 COG0673 MviM Predicted dehydro 94.2 0.18 3.8E-06 49.9 8.1 96 85-209 2-99 (342)
78 PF02826 2-Hacid_dh_C: D-isome 93.9 0.083 1.8E-06 48.5 4.7 32 87-121 37-68 (178)
79 PRK05472 redox-sensing transcr 93.7 0.13 2.8E-06 48.7 5.7 96 86-209 84-179 (213)
80 COG0569 TrkA K+ transport syst 93.7 0.14 3E-06 49.1 6.0 98 87-210 1-102 (225)
81 PRK09436 thrA bifunctional asp 93.1 0.058 1.3E-06 61.1 2.6 37 85-121 464-506 (819)
82 PLN02477 glutamate dehydrogena 92.7 0.9 1.9E-05 47.7 10.7 95 86-206 206-308 (410)
83 PRK09466 metL bifunctional asp 92.7 0.096 2.1E-06 59.3 3.7 38 84-121 456-500 (810)
84 PF05368 NmrA: NmrA-like famil 92.7 0.2 4.3E-06 47.0 5.3 96 89-209 1-103 (233)
85 COG2344 AT-rich DNA-binding pr 92.5 0.23 5E-06 47.1 5.3 96 87-210 85-180 (211)
86 PLN00016 RNA-binding protein; 92.4 0.46 1E-05 48.3 8.0 38 80-120 46-88 (378)
87 CHL00194 ycf39 Ycf39; Provisio 92.4 0.33 7.2E-06 48.0 6.7 31 87-120 1-32 (317)
88 PRK14030 glutamate dehydrogena 92.2 0.82 1.8E-05 48.5 9.7 104 86-206 228-341 (445)
89 TIGR02130 dapB_plant dihydrodi 92.2 0.36 7.8E-06 48.1 6.6 89 87-203 1-96 (275)
90 PRK08229 2-dehydropantoate 2-r 92.0 0.53 1.1E-05 47.1 7.7 33 85-120 1-33 (341)
91 PTZ00079 NADP-specific glutama 91.8 0.77 1.7E-05 48.8 8.8 103 86-206 237-350 (454)
92 COG4091 Predicted homoserine d 91.3 0.33 7.2E-06 50.0 5.3 34 86-121 17-50 (438)
93 PRK08410 2-hydroxyacid dehydro 91.2 0.25 5.5E-06 49.6 4.4 32 86-120 145-176 (311)
94 PF13460 NAD_binding_10: NADH( 90.8 0.22 4.8E-06 44.6 3.2 30 89-121 1-31 (183)
95 PRK06487 glycerate dehydrogena 90.6 0.3 6.6E-06 49.2 4.4 32 86-120 148-179 (317)
96 TIGR03736 PRTRC_ThiF PRTRC sys 90.2 0.58 1.3E-05 45.8 5.8 108 85-197 10-127 (244)
97 PRK06932 glycerate dehydrogena 90.0 0.37 7.9E-06 48.6 4.3 31 86-119 147-177 (314)
98 PF13380 CoA_binding_2: CoA bi 89.9 1.1 2.4E-05 38.6 6.6 83 88-209 2-88 (116)
99 PF03807 F420_oxidored: NADP o 89.8 0.66 1.4E-05 37.5 5.0 43 88-131 1-43 (96)
100 COG2910 Putative NADH-flavin r 89.8 1.2 2.7E-05 42.3 7.3 31 87-120 1-32 (211)
101 PF10727 Rossmann-like: Rossma 89.4 0.31 6.8E-06 43.0 3.0 33 86-121 10-42 (127)
102 TIGR03649 ergot_EASG ergot alk 89.3 1.2 2.6E-05 43.0 7.1 30 88-120 1-31 (285)
103 cd01075 NAD_bind_Leu_Phe_Val_D 89.1 1.6 3.4E-05 41.1 7.6 29 87-118 29-57 (200)
104 PRK14031 glutamate dehydrogena 89.0 1.5 3.2E-05 46.6 8.0 103 86-207 228-341 (444)
105 PLN02928 oxidoreductase family 88.9 0.49 1.1E-05 48.4 4.4 33 86-121 159-191 (347)
106 PRK07574 formate dehydrogenase 88.7 0.51 1.1E-05 49.1 4.4 32 86-120 192-223 (385)
107 COG0111 SerA Phosphoglycerate 88.6 0.55 1.2E-05 47.7 4.4 32 86-120 142-173 (324)
108 PRK06436 glycerate dehydrogena 88.4 0.58 1.3E-05 47.1 4.5 32 86-120 122-153 (303)
109 PRK15409 bifunctional glyoxyla 88.4 0.57 1.2E-05 47.5 4.4 31 86-119 145-176 (323)
110 PF03435 Saccharop_dh: Sacchar 88.3 0.4 8.7E-06 48.9 3.3 95 89-207 1-96 (386)
111 COG1052 LdhA Lactate dehydroge 88.2 0.58 1.3E-05 47.6 4.3 32 86-120 146-177 (324)
112 PRK11790 D-3-phosphoglycerate 88.0 0.63 1.4E-05 48.7 4.5 31 86-119 151-181 (409)
113 PRK11880 pyrroline-5-carboxyla 87.9 0.68 1.5E-05 44.7 4.5 35 85-119 1-35 (267)
114 PRK13243 glyoxylate reductase; 87.6 0.68 1.5E-05 47.0 4.4 32 86-120 150-181 (333)
115 cd08230 glucose_DH Glucose deh 87.6 6.1 0.00013 39.5 11.2 30 88-120 175-204 (355)
116 PTZ00117 malate dehydrogenase; 87.5 2.2 4.7E-05 43.1 7.9 24 86-109 5-28 (319)
117 PF02670 DXP_reductoisom: 1-de 87.5 1.1 2.4E-05 39.8 5.1 42 89-131 1-43 (129)
118 COG1748 LYS9 Saccharopine dehy 87.4 1.3 2.8E-05 46.3 6.4 98 87-207 2-99 (389)
119 PLN03209 translocon at the inn 87.4 5.7 0.00012 43.6 11.4 31 87-120 81-112 (576)
120 PLN02819 lysine-ketoglutarate 87.1 1.6 3.4E-05 50.9 7.4 92 87-202 570-674 (1042)
121 PRK15469 ghrA bifunctional gly 87.0 0.82 1.8E-05 46.1 4.6 31 87-120 137-167 (312)
122 PRK07819 3-hydroxybutyryl-CoA 87.0 4.2 9.2E-05 40.3 9.5 150 88-258 7-180 (286)
123 PF03446 NAD_binding_2: NAD bi 86.8 1 2.2E-05 40.7 4.6 31 87-120 2-32 (163)
124 PRK12480 D-lactate dehydrogena 86.7 0.87 1.9E-05 46.3 4.5 31 86-119 146-176 (330)
125 PLN02306 hydroxypyruvate reduc 86.1 0.91 2E-05 47.3 4.4 31 86-119 165-196 (386)
126 PRK15438 erythronate-4-phospha 86.0 0.94 2E-05 47.1 4.5 31 86-119 116-146 (378)
127 PLN03139 formate dehydrogenase 85.9 0.87 1.9E-05 47.4 4.2 31 86-119 199-229 (386)
128 PLN02657 3,8-divinyl protochlo 85.9 3.7 8E-05 42.3 8.8 32 86-120 60-92 (390)
129 PRK11559 garR tartronate semia 85.7 0.99 2.1E-05 44.3 4.3 32 85-119 1-32 (296)
130 TIGR01202 bchC 2-desacetyl-2-h 85.3 3.9 8.4E-05 40.3 8.3 22 88-109 147-168 (308)
131 TIGR01761 thiaz-red thiazoliny 85.1 2.1 4.7E-05 43.8 6.5 34 86-121 3-36 (343)
132 PRK08306 dipicolinate synthase 84.8 1.7 3.6E-05 43.5 5.4 32 86-120 152-183 (296)
133 PRK05476 S-adenosyl-L-homocyst 84.8 2.5 5.4E-05 44.7 7.0 30 87-119 213-242 (425)
134 PRK06223 malate dehydrogenase; 84.7 4.3 9.3E-05 40.2 8.3 30 87-118 3-32 (307)
135 PF02629 CoA_binding: CoA bind 84.4 0.72 1.6E-05 38.2 2.3 92 86-209 3-95 (96)
136 PRK06522 2-dehydropantoate 2-r 84.2 5.6 0.00012 38.7 8.8 31 87-120 1-31 (304)
137 COG0039 Mdh Malate/lactate deh 84.0 2.3 4.9E-05 43.3 6.0 141 87-260 1-163 (313)
138 PRK07634 pyrroline-5-carboxyla 83.8 1.7 3.7E-05 41.2 4.8 35 86-120 4-39 (245)
139 cd05213 NAD_bind_Glutamyl_tRNA 83.7 2.8 6.1E-05 42.0 6.6 33 86-120 178-210 (311)
140 COG1063 Tdh Threonine dehydrog 83.5 2.7 5.8E-05 42.7 6.5 100 88-209 171-271 (350)
141 PF00056 Ldh_1_N: lactate/mala 82.8 3.5 7.6E-05 36.6 6.2 23 87-109 1-24 (141)
142 KOG2741 Dimeric dihydrodiol de 82.7 1.6 3.5E-05 44.9 4.3 99 84-207 4-102 (351)
143 TIGR00243 Dxr 1-deoxy-D-xylulo 82.5 2.1 4.6E-05 44.7 5.2 113 87-208 2-124 (389)
144 PRK00257 erythronate-4-phospha 82.4 1.7 3.6E-05 45.3 4.5 30 87-119 117-146 (381)
145 PLN02214 cinnamoyl-CoA reducta 82.4 6.6 0.00014 39.4 8.7 31 87-120 11-42 (342)
146 PRK09880 L-idonate 5-dehydroge 82.4 5.8 0.00013 39.5 8.2 29 88-119 172-201 (343)
147 PTZ00082 L-lactate dehydrogena 82.2 2.7 5.9E-05 42.5 5.8 23 87-109 7-29 (321)
148 PRK08605 D-lactate dehydrogena 82.1 1.7 3.7E-05 44.1 4.3 32 86-119 146-177 (332)
149 PRK07417 arogenate dehydrogena 81.7 1.8 3.9E-05 42.4 4.2 31 87-120 1-31 (279)
150 TIGR01327 PGDH D-3-phosphoglyc 81.7 1.7 3.8E-05 46.8 4.5 31 87-120 139-169 (525)
151 cd00401 AdoHcyase S-adenosyl-L 81.1 3.3 7.1E-05 43.6 6.1 29 87-118 203-231 (413)
152 PRK00045 hemA glutamyl-tRNA re 81.0 5 0.00011 42.0 7.5 32 87-120 183-214 (423)
153 PRK13581 D-3-phosphoglycerate 80.8 1.9 4.2E-05 46.5 4.4 32 86-120 140-171 (526)
154 PLN02602 lactate dehydrogenase 80.7 4.8 0.0001 41.4 7.1 149 87-266 38-205 (350)
155 PLN02256 arogenate dehydrogena 80.7 2.2 4.8E-05 42.9 4.6 33 86-121 36-68 (304)
156 PRK13403 ketol-acid reductoiso 80.7 2.2 4.7E-05 43.8 4.5 32 87-121 17-48 (335)
157 TIGR03366 HpnZ_proposed putati 80.7 7.1 0.00015 37.8 8.0 137 88-254 123-260 (280)
158 PLN02712 arogenate dehydrogena 80.6 2.2 4.7E-05 47.6 4.8 35 84-121 367-401 (667)
159 PLN00106 malate dehydrogenase 80.0 9.8 0.00021 38.7 8.9 22 87-108 19-41 (323)
160 PLN02712 arogenate dehydrogena 79.3 2.4 5.1E-05 47.3 4.6 33 86-121 52-84 (667)
161 PRK03369 murD UDP-N-acetylmura 78.9 11 0.00024 40.1 9.4 86 88-207 14-99 (488)
162 cd01483 E1_enzyme_family Super 78.8 1.6 3.6E-05 38.1 2.6 22 88-109 1-22 (143)
163 COG0451 WcaG Nucleoside-diphos 78.6 11 0.00023 36.3 8.4 30 88-120 2-32 (314)
164 KOG1502 Flavonol reductase/cin 78.4 11 0.00023 38.7 8.6 80 85-186 5-88 (327)
165 TIGR01019 sucCoAalpha succinyl 78.0 5.9 0.00013 39.7 6.6 86 87-206 7-93 (286)
166 PRK12464 1-deoxy-D-xylulose 5- 77.7 3.8 8.3E-05 42.7 5.3 108 91-208 1-117 (383)
167 PRK00066 ldh L-lactate dehydro 77.5 12 0.00026 37.8 8.7 23 87-109 7-29 (315)
168 COG0771 MurD UDP-N-acetylmuram 76.2 12 0.00025 40.0 8.5 90 86-206 7-97 (448)
169 PLN02662 cinnamyl-alcohol dehy 76.1 13 0.00029 36.1 8.4 30 87-119 5-35 (322)
170 PRK08507 prephenate dehydrogen 76.0 3.9 8.4E-05 39.9 4.6 33 87-120 1-33 (275)
171 cd05294 LDH-like_MDH_nadp A la 75.7 6.4 0.00014 39.5 6.2 32 87-119 1-33 (309)
172 TIGR02853 spore_dpaA dipicolin 75.6 3.8 8.1E-05 40.9 4.4 31 87-120 152-182 (287)
173 PRK01438 murD UDP-N-acetylmura 75.3 19 0.00041 37.9 9.8 91 87-207 17-107 (480)
174 cd08239 THR_DH_like L-threonin 75.0 6.8 0.00015 38.6 6.1 31 87-120 165-196 (339)
175 PRK09599 6-phosphogluconate de 74.7 4 8.7E-05 40.5 4.4 31 87-120 1-31 (301)
176 cd05293 LDH_1 A subgroup of L- 74.5 5.8 0.00012 40.0 5.5 23 87-109 4-26 (312)
177 PRK06476 pyrroline-5-carboxyla 74.5 4.3 9.2E-05 39.2 4.4 22 87-108 1-22 (258)
178 COG0287 TyrA Prephenate dehydr 74.4 4.2 9E-05 40.6 4.4 25 85-109 2-26 (279)
179 PLN02688 pyrroline-5-carboxyla 74.4 4.7 0.0001 38.8 4.7 35 87-121 1-36 (266)
180 KOG0069 Glyoxylate/hydroxypyru 74.3 2.3 5E-05 43.6 2.6 23 85-107 161-183 (336)
181 cd08242 MDR_like Medium chain 73.9 18 0.00038 35.2 8.6 83 88-202 158-240 (319)
182 PRK12490 6-phosphogluconate de 73.6 4.4 9.6E-05 40.2 4.4 31 87-120 1-31 (299)
183 cd08298 CAD2 Cinnamyl alcohol 73.5 46 0.00099 32.4 11.5 84 88-204 170-253 (329)
184 PLN02260 probable rhamnose bio 73.2 14 0.0003 40.7 8.5 34 86-120 6-40 (668)
185 PF02254 TrkA_N: TrkA-N domain 73.1 6.3 0.00014 32.7 4.6 29 89-120 1-29 (116)
186 PRK12491 pyrroline-5-carboxyla 73.0 5.2 0.00011 39.4 4.7 36 85-120 1-37 (272)
187 cd05290 LDH_3 A subgroup of L- 72.8 5.3 0.00012 40.2 4.8 22 88-109 1-22 (307)
188 PRK15116 sulfur acceptor prote 72.2 3.1 6.7E-05 41.3 2.9 24 86-109 30-53 (268)
189 TIGR00872 gnd_rel 6-phosphoglu 72.2 5 0.00011 39.8 4.3 31 87-120 1-31 (298)
190 TIGR02717 AcCoA-syn-alpha acet 72.1 13 0.00028 39.4 7.6 83 87-206 8-94 (447)
191 PRK09496 trkA potassium transp 71.6 5 0.00011 41.5 4.4 31 87-120 1-31 (453)
192 COG1064 AdhP Zn-dependent alco 71.5 20 0.00043 36.9 8.6 93 87-209 168-261 (339)
193 PF03721 UDPG_MGDP_dh_N: UDP-g 71.5 5.6 0.00012 37.0 4.3 30 87-119 1-30 (185)
194 PTZ00075 Adenosylhomocysteinas 71.4 5.4 0.00012 42.8 4.6 30 87-119 255-284 (476)
195 cd00755 YgdL_like Family of ac 71.4 6.7 0.00014 38.0 4.9 24 86-109 11-34 (231)
196 cd05291 HicDH_like L-2-hydroxy 71.2 8.3 0.00018 38.4 5.7 31 88-119 2-32 (306)
197 PRK03659 glutathione-regulated 71.1 5.7 0.00012 43.6 4.9 37 86-127 400-436 (601)
198 COG3804 Uncharacterized conser 70.8 5.8 0.00013 40.1 4.4 35 85-121 1-35 (350)
199 PRK12921 2-dehydropantoate 2-r 70.1 35 0.00076 33.2 9.8 30 87-119 1-30 (305)
200 cd08281 liver_ADH_like1 Zinc-d 70.1 11 0.00023 38.1 6.3 95 88-206 194-289 (371)
201 PRK14619 NAD(P)H-dependent gly 69.9 6.4 0.00014 39.2 4.6 31 87-120 5-35 (308)
202 cd01338 MDH_choloroplast_like 69.9 9.9 0.00021 38.6 6.0 23 86-108 2-25 (322)
203 COG0334 GdhA Glutamate dehydro 69.9 28 0.00061 36.8 9.3 32 87-121 208-239 (411)
204 PRK05678 succinyl-CoA syntheta 69.8 13 0.00029 37.3 6.8 86 87-206 9-95 (291)
205 PRK03562 glutathione-regulated 69.7 6.3 0.00014 43.5 4.9 32 86-120 400-431 (621)
206 PLN02572 UDP-sulfoquinovose sy 69.2 8.9 0.00019 40.3 5.7 43 74-119 35-78 (442)
207 TIGR01505 tartro_sem_red 2-hyd 69.1 5.6 0.00012 39.0 3.9 30 88-120 1-30 (291)
208 COG0743 Dxr 1-deoxy-D-xylulose 69.1 7.8 0.00017 40.3 5.0 44 87-131 2-46 (385)
209 PRK07502 cyclohexadienyl dehyd 68.8 6.9 0.00015 38.8 4.5 32 87-119 7-38 (307)
210 KOG0068 D-3-phosphoglycerate d 68.6 6.3 0.00014 40.8 4.2 29 88-119 148-176 (406)
211 PRK00683 murD UDP-N-acetylmura 67.9 11 0.00024 39.0 6.0 85 88-208 5-89 (418)
212 PF00208 ELFV_dehydrog: Glutam 67.7 6.9 0.00015 38.2 4.2 102 87-207 33-145 (244)
213 PLN02514 cinnamyl-alcohol dehy 67.2 51 0.0011 33.1 10.5 138 87-259 182-319 (357)
214 PRK00094 gpsA NAD(P)H-dependen 67.1 7.9 0.00017 38.1 4.5 31 87-120 2-32 (325)
215 PLN02586 probable cinnamyl alc 66.3 25 0.00055 35.5 8.1 30 88-120 186-215 (360)
216 TIGR03201 dearomat_had 6-hydro 66.2 52 0.0011 32.8 10.3 29 88-119 169-197 (349)
217 PLN02494 adenosylhomocysteinas 65.8 8.2 0.00018 41.5 4.6 31 87-120 255-285 (477)
218 PRK06928 pyrroline-5-carboxyla 65.3 9.5 0.00021 37.5 4.7 34 87-120 2-36 (277)
219 PRK10669 putative cation:proto 64.8 9.3 0.0002 41.3 4.9 34 84-120 415-448 (558)
220 TIGR01087 murD UDP-N-acetylmur 64.8 38 0.00082 35.1 9.2 88 88-207 1-91 (433)
221 TIGR03026 NDP-sugDHase nucleot 64.6 8.1 0.00018 40.1 4.3 31 87-120 1-31 (411)
222 PF02737 3HCDH_N: 3-hydroxyacy 64.3 11 0.00023 34.9 4.5 30 88-120 1-30 (180)
223 PF04321 RmlD_sub_bind: RmlD s 64.2 8.9 0.00019 37.7 4.3 31 87-120 1-32 (286)
224 PRK03803 murD UDP-N-acetylmura 64.1 42 0.00091 35.0 9.5 106 88-225 8-119 (448)
225 PRK06718 precorrin-2 dehydroge 64.0 58 0.0013 30.7 9.6 31 87-120 11-41 (202)
226 TIGR01915 npdG NADPH-dependent 63.9 11 0.00023 35.7 4.6 30 87-119 1-31 (219)
227 cd08301 alcohol_DH_plants Plan 63.7 16 0.00034 36.7 6.0 31 87-120 189-220 (369)
228 PRK07679 pyrroline-5-carboxyla 63.6 10 0.00023 37.0 4.6 34 87-120 4-38 (279)
229 PRK15059 tartronate semialdehy 63.4 9.5 0.00021 37.9 4.3 30 87-119 1-30 (292)
230 PRK00141 murD UDP-N-acetylmura 63.2 39 0.00084 35.8 9.1 86 88-207 17-103 (473)
231 PRK05865 hypothetical protein; 62.8 23 0.00051 40.7 7.8 31 87-120 1-32 (854)
232 cd01487 E1_ThiF_like E1_ThiF_l 62.8 4.7 0.0001 37.1 1.9 22 88-109 1-22 (174)
233 TIGR00936 ahcY adenosylhomocys 62.7 10 0.00022 39.9 4.5 30 87-119 196-225 (406)
234 PRK00421 murC UDP-N-acetylmura 62.6 34 0.00075 35.9 8.5 87 87-207 8-95 (461)
235 COG2085 Predicted dinucleotide 62.4 13 0.00028 35.8 4.8 31 87-120 2-32 (211)
236 cd00757 ThiF_MoeB_HesA_family 62.3 4.4 9.5E-05 38.7 1.7 24 86-109 21-44 (228)
237 PRK02006 murD UDP-N-acetylmura 62.3 46 0.001 35.4 9.5 28 88-118 9-36 (498)
238 PRK07201 short chain dehydroge 62.0 44 0.00095 36.3 9.5 34 87-121 1-35 (657)
239 KOG1203 Predicted dehydrogenas 61.8 23 0.0005 37.4 6.9 24 86-109 79-103 (411)
240 PRK05479 ketol-acid reductoiso 61.5 11 0.00023 38.7 4.3 31 87-120 18-48 (330)
241 PRK14618 NAD(P)H-dependent gly 60.7 12 0.00025 37.5 4.4 31 87-120 5-35 (328)
242 PRK14573 bifunctional D-alanyl 60.7 34 0.00073 38.9 8.6 82 88-201 6-88 (809)
243 PRK08644 thiamine biosynthesis 60.6 4.3 9.3E-05 38.6 1.2 24 86-109 28-51 (212)
244 PLN02778 3,5-epimerase/4-reduc 60.4 13 0.00028 36.7 4.6 30 84-116 7-37 (298)
245 PRK09424 pntA NAD(P) transhydr 60.3 43 0.00093 36.4 8.9 31 86-119 165-195 (509)
246 PRK12475 thiamine/molybdopteri 60.1 24 0.00051 36.1 6.6 24 86-109 24-47 (338)
247 PRK06249 2-dehydropantoate 2-r 59.9 13 0.00027 37.1 4.5 24 86-109 5-28 (313)
248 COG1062 AdhC Zn-dependent alco 59.8 21 0.00045 37.0 6.0 90 87-199 187-277 (366)
249 PLN02545 3-hydroxybutyryl-CoA 59.8 13 0.00028 36.6 4.5 30 88-120 6-35 (295)
250 PRK07680 late competence prote 59.8 14 0.0003 36.0 4.6 22 87-108 1-22 (273)
251 PRK11199 tyrA bifunctional cho 59.8 11 0.00024 38.9 4.2 31 86-119 98-129 (374)
252 PRK01710 murD UDP-N-acetylmura 59.7 54 0.0012 34.5 9.4 108 88-225 16-128 (458)
253 PRK06444 prephenate dehydrogen 59.5 11 0.00024 35.7 3.8 22 87-108 1-23 (197)
254 PRK11064 wecC UDP-N-acetyl-D-m 59.5 12 0.00027 39.1 4.5 31 87-120 4-34 (415)
255 PRK04690 murD UDP-N-acetylmura 59.2 40 0.00086 35.8 8.3 89 88-207 10-98 (468)
256 COG0702 Predicted nucleoside-d 58.8 13 0.00027 35.0 4.1 31 87-120 1-32 (275)
257 TIGR03451 mycoS_dep_FDH mycoth 58.2 37 0.00081 33.9 7.6 30 87-119 178-208 (358)
258 PRK03806 murD UDP-N-acetylmura 58.1 77 0.0017 32.9 10.1 103 88-225 8-116 (438)
259 PRK06129 3-hydroxyacyl-CoA deh 57.9 14 0.00029 36.8 4.3 31 87-120 3-33 (308)
260 PRK15461 NADH-dependent gamma- 57.8 13 0.00029 36.8 4.2 31 87-120 2-32 (296)
261 PLN02740 Alcohol dehydrogenase 57.6 21 0.00046 36.2 5.8 29 88-119 201-230 (381)
262 PTZ00431 pyrroline carboxylate 57.3 9.5 0.0002 37.1 3.0 22 87-108 4-25 (260)
263 PRK02472 murD UDP-N-acetylmura 57.1 51 0.0011 34.2 8.6 88 88-207 7-97 (447)
264 cd08296 CAD_like Cinnamyl alco 56.8 37 0.00079 33.4 7.2 93 88-206 166-258 (333)
265 PRK06545 prephenate dehydrogen 56.5 14 0.00031 37.7 4.3 30 88-118 2-31 (359)
266 PRK06035 3-hydroxyacyl-CoA deh 56.5 16 0.00034 35.9 4.5 30 88-120 5-34 (291)
267 TIGR00465 ilvC ketol-acid redu 56.5 15 0.00032 37.2 4.4 31 87-120 4-34 (314)
268 cd01484 E1-2_like Ubiquitin ac 56.2 6.5 0.00014 38.2 1.7 101 88-194 1-109 (234)
269 PRK06988 putative formyltransf 56.0 15 0.00032 37.1 4.2 31 85-118 1-31 (312)
270 PRK09260 3-hydroxybutyryl-CoA 55.9 16 0.00034 35.9 4.4 29 88-119 3-31 (288)
271 PRK05708 2-dehydropantoate 2-r 55.8 16 0.00034 36.5 4.3 24 85-108 1-24 (305)
272 COG0345 ProC Pyrroline-5-carbo 55.8 16 0.00036 36.3 4.4 34 87-120 2-36 (266)
273 PRK07531 bifunctional 3-hydrox 55.7 15 0.00033 39.3 4.5 31 87-120 5-35 (495)
274 cd01486 Apg7 Apg7 is an E1-lik 55.5 6.1 0.00013 40.1 1.4 22 88-109 1-22 (307)
275 cd08245 CAD Cinnamyl alcohol d 55.1 53 0.0011 31.9 7.9 31 87-120 164-194 (330)
276 PF01262 AlaDh_PNT_C: Alanine 54.9 20 0.00044 32.4 4.6 32 86-120 20-51 (168)
277 PRK05808 3-hydroxybutyryl-CoA 54.3 17 0.00038 35.4 4.3 30 87-119 4-33 (282)
278 PRK08818 prephenate dehydrogen 54.1 17 0.00037 37.8 4.4 31 86-118 4-35 (370)
279 PLN02427 UDP-apiose/xylose syn 53.8 18 0.00039 36.7 4.5 32 87-120 15-47 (386)
280 cd08237 ribitol-5-phosphate_DH 53.7 43 0.00094 33.4 7.2 30 88-119 166-196 (341)
281 cd08235 iditol_2_DH_like L-idi 53.3 1E+02 0.0022 30.1 9.6 29 88-119 168-197 (343)
282 cd05283 CAD1 Cinnamyl alcohol 53.1 80 0.0017 31.1 8.9 87 87-201 171-257 (337)
283 PRK08655 prephenate dehydrogen 53.0 18 0.00039 38.2 4.5 30 87-119 1-31 (437)
284 PRK05690 molybdopterin biosynt 52.9 7.4 0.00016 37.8 1.5 24 86-109 32-55 (245)
285 PRK11908 NAD-dependent epimera 52.6 20 0.00043 35.6 4.6 32 87-120 2-34 (347)
286 PRK14106 murD UDP-N-acetylmura 52.4 70 0.0015 33.2 8.7 110 87-225 6-119 (450)
287 PRK06130 3-hydroxybutyryl-CoA 52.4 20 0.00044 35.4 4.6 30 87-119 5-34 (311)
288 PLN02695 GDP-D-mannose-3',5'-e 51.9 23 0.00049 36.1 4.9 32 86-120 21-53 (370)
289 cd08277 liver_alcohol_DH_like 51.9 52 0.0011 33.0 7.5 30 87-119 186-216 (365)
290 PRK11154 fadJ multifunctional 51.8 17 0.00037 40.8 4.3 31 87-119 310-340 (708)
291 PRK04663 murD UDP-N-acetylmura 51.5 1.1E+02 0.0024 31.9 10.1 105 88-225 9-119 (438)
292 PLN02260 probable rhamnose bio 51.5 21 0.00046 39.2 5.0 40 84-126 378-419 (668)
293 TIGR02818 adh_III_F_hyde S-(hy 51.3 31 0.00066 34.9 5.7 29 88-119 188-217 (368)
294 PF12338 RbcS: Ribulose-1,5-bi 51.1 8 0.00017 28.4 1.0 21 35-55 22-42 (45)
295 PRK15057 UDP-glucose 6-dehydro 50.9 19 0.00041 37.5 4.2 30 87-120 1-30 (388)
296 PRK04308 murD UDP-N-acetylmura 50.8 1E+02 0.0023 32.0 9.7 91 87-207 6-96 (445)
297 PLN02166 dTDP-glucose 4,6-dehy 50.5 27 0.00059 36.7 5.3 32 86-120 120-152 (436)
298 PLN00141 Tic62-NAD(P)-related 50.4 29 0.00063 32.8 5.1 31 87-120 18-49 (251)
299 PRK09496 trkA potassium transp 50.0 21 0.00046 36.9 4.4 32 86-120 231-262 (453)
300 cd08233 butanediol_DH_like (2R 50.0 31 0.00067 34.2 5.4 29 88-119 175-204 (351)
301 cd08234 threonine_DH_like L-th 49.7 46 0.00099 32.4 6.5 29 88-119 162-191 (334)
302 PLN02178 cinnamyl-alcohol dehy 49.3 51 0.0011 33.7 7.0 29 88-119 181-209 (375)
303 PRK05442 malate dehydrogenase; 48.8 28 0.00061 35.4 4.9 23 86-108 4-27 (326)
304 TIGR02441 fa_ox_alpha_mit fatt 48.5 34 0.00074 38.7 6.0 29 88-119 337-365 (737)
305 PRK07530 3-hydroxybutyryl-CoA 48.5 26 0.00057 34.3 4.6 30 87-119 5-34 (292)
306 TIGR01759 MalateDH-SF1 malate 48.5 35 0.00076 34.7 5.6 23 86-108 3-26 (323)
307 PRK10675 UDP-galactose-4-epime 48.5 25 0.00054 34.5 4.5 31 87-120 1-32 (338)
308 TIGR01470 cysG_Nterm siroheme 48.4 61 0.0013 30.6 6.9 29 88-119 11-39 (205)
309 cd08294 leukotriene_B4_DH_like 48.1 32 0.00068 33.4 5.1 30 88-120 146-176 (329)
310 cd08231 MDR_TM0436_like Hypoth 48.0 90 0.002 31.0 8.4 29 88-119 180-209 (361)
311 cd08254 hydroxyacyl_CoA_DH 6-h 47.9 35 0.00077 33.0 5.4 95 88-206 168-262 (338)
312 PRK11730 fadB multifunctional 47.9 25 0.00055 39.5 4.8 29 88-119 315-343 (715)
313 TIGR00561 pntA NAD(P) transhyd 47.8 53 0.0011 35.8 7.0 23 87-109 165-187 (511)
314 TIGR02355 moeB molybdopterin s 47.8 10 0.00022 36.7 1.6 23 87-109 25-47 (240)
315 cd08255 2-desacetyl-2-hydroxye 47.8 91 0.002 29.4 8.1 29 88-119 100-129 (277)
316 KOG4039 Serine/threonine kinas 47.3 1.1E+02 0.0025 29.3 8.3 33 86-120 18-52 (238)
317 cd05191 NAD_bind_amino_acid_DH 47.3 28 0.0006 27.9 3.8 22 87-108 24-45 (86)
318 cd08269 Zn_ADH9 Alcohol dehydr 47.2 38 0.00083 32.4 5.4 30 88-120 132-162 (312)
319 PRK10083 putative oxidoreducta 46.7 76 0.0016 31.0 7.6 20 88-107 163-182 (339)
320 PRK07877 hypothetical protein; 46.7 9.4 0.0002 43.1 1.2 116 86-208 107-227 (722)
321 TIGR00518 alaDH alanine dehydr 46.5 27 0.00059 36.0 4.5 32 86-120 167-198 (370)
322 PTZ00142 6-phosphogluconate de 46.4 22 0.00048 38.0 4.0 31 87-120 2-32 (470)
323 PLN02702 L-idonate 5-dehydroge 46.2 43 0.00094 33.4 5.8 22 88-109 184-205 (364)
324 PLN02206 UDP-glucuronate decar 45.9 33 0.00072 36.2 5.1 32 86-120 119-151 (442)
325 PLN02240 UDP-glucose 4-epimera 45.8 31 0.00066 34.1 4.6 32 86-120 5-37 (352)
326 PRK09987 dTDP-4-dehydrorhamnos 45.8 33 0.00072 33.6 4.9 29 87-119 1-30 (299)
327 TIGR02437 FadB fatty oxidation 45.6 23 0.0005 39.8 4.1 29 88-119 315-343 (714)
328 cd05292 LDH_2 A subgroup of L- 45.5 30 0.00066 34.6 4.6 23 87-109 1-23 (308)
329 cd08246 crotonyl_coA_red croto 45.5 2.4E+02 0.0051 28.5 11.2 29 88-119 196-225 (393)
330 cd05188 MDR Medium chain reduc 45.4 85 0.0018 28.9 7.3 30 88-120 137-166 (271)
331 cd08236 sugar_DH NAD(P)-depend 45.2 61 0.0013 31.8 6.6 30 88-120 162-192 (343)
332 cd01065 NAD_bind_Shikimate_DH 45.1 37 0.0008 29.4 4.6 31 87-119 20-50 (155)
333 PRK02318 mannitol-1-phosphate 44.6 26 0.00055 36.2 4.0 31 87-119 1-31 (381)
334 TIGR01035 hemA glutamyl-tRNA r 44.5 30 0.00066 36.2 4.6 33 87-121 181-213 (417)
335 cd08260 Zn_ADH6 Alcohol dehydr 44.4 36 0.00078 33.5 4.9 30 88-120 168-197 (345)
336 PRK07066 3-hydroxybutyryl-CoA 44.3 32 0.00069 35.0 4.5 29 88-119 9-37 (321)
337 smart00833 CobW_C Cobalamin sy 44.2 35 0.00077 27.1 4.0 49 331-380 3-55 (92)
338 cd08289 MDR_yhfp_like Yhfp put 44.1 67 0.0014 31.0 6.6 30 88-120 149-179 (326)
339 TIGR00715 precor6x_red precorr 43.3 28 0.00061 34.3 3.9 28 87-118 1-29 (256)
340 cd08263 Zn_ADH10 Alcohol dehyd 43.1 1.4E+02 0.0029 29.9 8.9 30 88-120 190-220 (367)
341 PRK10309 galactitol-1-phosphat 43.0 45 0.00098 33.0 5.4 29 88-119 163-192 (347)
342 cd01339 LDH-like_MDH L-lactate 42.9 28 0.00061 34.5 3.9 28 89-118 1-28 (300)
343 cd08300 alcohol_DH_class_III c 42.9 99 0.0021 31.1 7.9 30 87-119 188-218 (368)
344 PRK08293 3-hydroxybutyryl-CoA 42.8 36 0.00077 33.4 4.5 30 87-119 4-33 (287)
345 cd08292 ETR_like_2 2-enoyl thi 42.6 66 0.0014 31.0 6.3 32 87-121 141-173 (324)
346 PRK05597 molybdopterin biosynt 42.5 14 0.00031 37.8 1.7 25 86-110 28-52 (355)
347 cd08262 Zn_ADH8 Alcohol dehydr 42.5 1.3E+02 0.0028 29.4 8.5 22 88-109 164-185 (341)
348 PRK08219 short chain dehydroge 42.4 35 0.00075 31.0 4.1 31 86-120 3-34 (227)
349 cd08284 FDH_like_2 Glutathione 42.2 1.1E+02 0.0023 30.0 7.9 28 88-118 170-198 (344)
350 cd08278 benzyl_alcohol_DH Benz 42.1 51 0.0011 33.1 5.7 30 88-120 189-219 (365)
351 TIGR03466 HpnA hopanoid-associ 42.0 33 0.00073 33.1 4.2 31 87-120 1-32 (328)
352 PF01488 Shikimate_DH: Shikima 42.0 37 0.00081 29.6 4.1 33 87-121 13-45 (135)
353 PRK15181 Vi polysaccharide bio 41.9 34 0.00073 34.3 4.3 31 87-120 16-47 (348)
354 TIGR01181 dTDP_gluc_dehyt dTDP 41.9 33 0.00073 32.8 4.1 31 88-119 1-32 (317)
355 COG1023 Gnd Predicted 6-phosph 41.6 26 0.00056 34.9 3.2 30 87-119 1-30 (300)
356 PRK02705 murD UDP-N-acetylmura 41.6 61 0.0013 33.8 6.3 108 88-225 2-120 (459)
357 PRK15182 Vi polysaccharide bio 41.5 30 0.00066 36.4 4.0 30 87-120 7-36 (425)
358 cd08270 MDR4 Medium chain dehy 41.4 2.2E+02 0.0049 27.0 9.8 87 87-206 134-221 (305)
359 PF02192 PI3K_p85B: PI3-kinase 41.3 53 0.0012 26.8 4.5 40 332-372 2-42 (78)
360 COG5322 Predicted dehydrogenas 41.3 88 0.0019 31.8 6.9 62 176-242 230-291 (351)
361 cd00704 MDH Malate dehydrogena 41.2 45 0.00097 33.9 5.0 22 87-108 1-23 (323)
362 PRK09291 short chain dehydroge 41.1 40 0.00087 31.4 4.4 31 87-120 3-34 (257)
363 PLN02896 cinnamyl-alcohol dehy 40.4 45 0.00098 33.2 5.0 31 87-120 11-42 (353)
364 PF01073 3Beta_HSD: 3-beta hyd 40.3 1.2E+02 0.0026 29.8 7.8 19 91-109 2-21 (280)
365 TIGR01757 Malate-DH_plant mala 40.2 56 0.0012 34.2 5.7 24 86-109 44-68 (387)
366 cd08290 ETR 2-enoyl thioester 39.7 67 0.0015 31.4 6.0 31 88-121 149-180 (341)
367 TIGR00873 gnd 6-phosphoglucona 39.7 31 0.00066 37.0 3.7 30 88-120 1-30 (467)
368 TIGR01214 rmlD dTDP-4-dehydror 39.6 39 0.00084 32.2 4.1 30 88-120 1-31 (287)
369 cd08232 idonate-5-DH L-idonate 39.5 1.8E+02 0.0039 28.4 8.9 30 87-119 167-197 (339)
370 cd08264 Zn_ADH_like2 Alcohol d 39.3 82 0.0018 30.5 6.5 127 88-252 165-292 (325)
371 COG0373 HemA Glutamyl-tRNA red 39.1 41 0.00089 35.6 4.5 33 87-121 179-211 (414)
372 PLN02353 probable UDP-glucose 38.8 44 0.00095 35.9 4.7 32 87-119 2-33 (473)
373 cd08259 Zn_ADH5 Alcohol dehydr 38.5 95 0.0021 29.8 6.7 29 88-119 165-194 (332)
374 PF01370 Epimerase: NAD depend 38.3 65 0.0014 29.3 5.3 30 89-121 1-31 (236)
375 PRK07326 short chain dehydroge 38.2 47 0.001 30.5 4.4 31 87-120 7-38 (237)
376 TIGR01381 E1_like_apg7 E1-like 37.8 13 0.00029 41.4 0.7 24 86-109 338-361 (664)
377 KOG0455 Homoserine dehydrogena 37.6 26 0.00057 35.1 2.6 36 86-121 3-44 (364)
378 PRK05086 malate dehydrogenase; 37.5 49 0.0011 33.3 4.7 21 87-107 1-22 (312)
379 PF00670 AdoHcyase_NAD: S-aden 37.3 33 0.00071 31.8 3.0 22 88-109 25-46 (162)
380 PRK14851 hypothetical protein; 37.2 15 0.00032 41.3 0.9 97 87-187 44-144 (679)
381 COG1179 Dinucleotide-utilizing 37.1 33 0.00071 34.1 3.2 99 88-193 32-138 (263)
382 PRK08017 oxidoreductase; Provi 36.9 52 0.0011 30.6 4.5 30 88-120 4-34 (256)
383 PLN03154 putative allyl alcoho 36.8 64 0.0014 32.4 5.4 29 88-119 161-190 (348)
384 PLN02827 Alcohol dehydrogenase 36.7 72 0.0016 32.4 5.8 28 88-118 196-224 (378)
385 PF00070 Pyr_redox: Pyridine n 36.6 74 0.0016 24.7 4.7 22 88-109 1-22 (80)
386 cd00300 LDH_like L-lactate deh 36.5 36 0.00078 33.9 3.5 21 89-109 1-21 (300)
387 cd01336 MDH_cytoplasmic_cytoso 36.5 52 0.0011 33.3 4.7 23 86-108 2-25 (325)
388 KOG0024 Sorbitol dehydrogenase 36.5 65 0.0014 33.3 5.2 102 80-201 164-267 (354)
389 cd05280 MDR_yhdh_yhfp Yhdh and 36.4 98 0.0021 29.7 6.4 29 88-119 149-178 (325)
390 PF00899 ThiF: ThiF family; I 36.2 37 0.0008 29.3 3.1 41 87-129 3-44 (135)
391 cd08287 FDH_like_ADH3 formalde 36.2 68 0.0015 31.5 5.4 30 88-120 171-201 (345)
392 PLN00112 malate dehydrogenase 36.1 18 0.00039 38.6 1.3 23 86-108 100-123 (444)
393 PRK05600 thiamine biosynthesis 36.0 15 0.00033 37.9 0.8 24 86-109 41-64 (370)
394 cd05288 PGDH Prostaglandin deh 35.9 1.4E+02 0.0031 28.8 7.5 29 88-119 148-177 (329)
395 TIGR02825 B4_12hDH leukotriene 35.9 73 0.0016 31.1 5.5 30 88-120 141-171 (325)
396 PF07683 CobW_C: Cobalamin syn 35.8 41 0.00089 26.9 3.1 50 330-380 2-54 (94)
397 PRK06019 phosphoribosylaminoim 35.7 52 0.0011 33.6 4.6 31 87-120 3-33 (372)
398 cd08238 sorbose_phosphate_red 35.7 1.9E+02 0.0042 29.6 8.8 34 175-208 256-289 (410)
399 PRK14192 bifunctional 5,10-met 35.6 1.4E+02 0.0031 29.8 7.5 28 176-207 202-229 (283)
400 TIGR02819 fdhA_non_GSH formald 35.3 2E+02 0.0043 29.6 8.8 31 88-121 188-218 (393)
401 cd08258 Zn_ADH4 Alcohol dehydr 35.3 1.5E+02 0.0033 28.8 7.7 138 88-254 167-305 (306)
402 PRK07023 short chain dehydroge 35.2 52 0.0011 30.5 4.2 30 87-119 2-32 (243)
403 PRK10538 malonic semialdehyde 34.9 56 0.0012 30.6 4.4 31 87-120 1-32 (248)
404 cd08295 double_bond_reductase_ 34.7 62 0.0014 31.9 4.9 29 88-119 154-183 (338)
405 PRK12320 hypothetical protein; 34.5 52 0.0011 37.1 4.6 31 87-120 1-32 (699)
406 PRK06046 alanine dehydrogenase 33.6 62 0.0013 32.6 4.7 33 87-121 130-162 (326)
407 PLN02350 phosphogluconate dehy 33.2 40 0.00088 36.4 3.4 132 87-229 7-157 (493)
408 PLN00198 anthocyanidin reducta 33.1 58 0.0013 32.1 4.4 31 86-119 9-40 (338)
409 TIGR00507 aroE shikimate 5-deh 33.0 2.1E+02 0.0045 27.8 8.2 31 87-120 118-148 (270)
410 cd05285 sorbitol_DH Sorbitol d 32.7 1.6E+02 0.0036 28.9 7.5 29 87-118 164-193 (343)
411 PRK10754 quinone oxidoreductas 32.7 80 0.0017 30.6 5.2 30 88-120 143-173 (327)
412 cd05281 TDH Threonine dehydrog 32.5 2.4E+02 0.0052 27.7 8.6 28 88-118 166-194 (341)
413 TIGR01763 MalateDH_bact malate 32.4 63 0.0014 32.4 4.5 144 87-261 2-164 (305)
414 PRK14620 NAD(P)H-dependent gly 32.4 63 0.0014 32.1 4.5 23 87-109 1-23 (326)
415 PRK05653 fabG 3-ketoacyl-(acyl 32.3 72 0.0016 29.1 4.6 31 87-120 6-37 (246)
416 cd08285 NADP_ADH NADP(H)-depen 32.0 1.2E+02 0.0026 30.0 6.4 23 87-109 168-190 (351)
417 PRK05396 tdh L-threonine 3-deh 31.5 1.5E+02 0.0032 29.1 6.9 28 88-118 166-194 (341)
418 PF02558 ApbA: Ketopantoate re 31.1 80 0.0017 27.3 4.4 29 89-120 1-29 (151)
419 TIGR01082 murC UDP-N-acetylmur 30.8 2.1E+02 0.0045 30.0 8.2 82 88-201 1-83 (448)
420 PRK10217 dTDP-glucose 4,6-dehy 30.5 63 0.0014 32.0 4.1 23 87-109 2-25 (355)
421 PRK12745 3-ketoacyl-(acyl-carr 30.4 77 0.0017 29.5 4.5 32 86-120 2-34 (256)
422 PLN02583 cinnamoyl-CoA reducta 30.4 73 0.0016 31.1 4.5 30 88-120 8-38 (297)
423 PRK12826 3-ketoacyl-(acyl-carr 30.3 70 0.0015 29.4 4.2 31 87-120 7-38 (251)
424 KOG3923 D-aspartate oxidase [A 30.2 63 0.0014 33.2 3.9 37 85-121 2-42 (342)
425 COG1893 ApbA Ketopantoate redu 30.2 63 0.0014 32.5 4.0 23 87-109 1-23 (307)
426 PRK08125 bifunctional UDP-gluc 30.2 65 0.0014 35.6 4.5 32 87-120 316-348 (660)
427 PRK06719 precorrin-2 dehydroge 30.0 84 0.0018 28.4 4.5 30 87-119 14-43 (157)
428 PF00107 ADH_zinc_N: Zinc-bind 29.9 17 0.00038 30.4 -0.0 36 175-210 57-92 (130)
429 cd08293 PTGR2 Prostaglandin re 29.7 69 0.0015 31.4 4.2 30 88-120 157-188 (345)
430 cd08252 AL_MDR Arginate lyase 29.7 1.7E+02 0.0036 28.4 6.9 31 88-120 152-183 (336)
431 TIGR01751 crot-CoA-red crotony 29.6 2.6E+02 0.0057 28.4 8.6 28 88-118 192-220 (398)
432 TIGR01777 yfcH conserved hypot 29.2 60 0.0013 30.7 3.6 29 89-120 1-30 (292)
433 cd08261 Zn_ADH7 Alcohol dehydr 29.2 1.2E+02 0.0027 29.6 5.9 30 88-120 162-191 (337)
434 PRK08223 hypothetical protein; 29.2 38 0.00083 34.1 2.3 23 87-109 28-50 (287)
435 cd08240 6_hydroxyhexanoate_dh_ 29.2 1.2E+02 0.0026 29.9 5.8 22 88-109 178-199 (350)
436 PRK06947 glucose-1-dehydrogena 28.8 81 0.0017 29.2 4.3 31 85-118 1-32 (248)
437 TIGR02279 PaaC-3OHAcCoADH 3-hy 28.7 74 0.0016 34.4 4.5 31 87-120 6-36 (503)
438 PRK12827 short chain dehydroge 28.6 84 0.0018 28.9 4.4 30 87-119 7-37 (249)
439 PRK08268 3-hydroxy-acyl-CoA de 28.5 75 0.0016 34.3 4.5 30 88-120 9-38 (507)
440 KOG2380 Prephenate dehydrogena 28.5 47 0.001 34.7 2.8 24 86-109 52-75 (480)
441 TIGR01179 galE UDP-glucose-4-e 28.5 75 0.0016 30.4 4.2 29 88-119 1-30 (328)
442 PRK08267 short chain dehydroge 28.5 88 0.0019 29.3 4.6 29 88-119 3-32 (260)
443 cd00650 LDH_MDH_like NAD-depen 28.4 30 0.00064 33.6 1.3 20 89-108 1-21 (263)
444 PRK14806 bifunctional cyclohex 28.4 74 0.0016 35.5 4.6 33 87-120 4-36 (735)
445 PRK03815 murD UDP-N-acetylmura 28.3 70 0.0015 33.3 4.1 27 87-117 1-27 (401)
446 cd01337 MDH_glyoxysomal_mitoch 28.3 55 0.0012 33.1 3.3 23 87-109 1-24 (310)
447 cd08249 enoyl_reductase_like e 28.2 1.2E+02 0.0027 29.8 5.7 95 88-207 157-254 (339)
448 PRK05884 short chain dehydroge 28.0 85 0.0019 29.2 4.3 30 87-119 1-31 (223)
449 cd05279 Zn_ADH1 Liver alcohol 27.9 1.1E+02 0.0024 30.6 5.5 22 88-109 186-207 (365)
450 PRK00258 aroE shikimate 5-dehy 27.8 90 0.0019 30.6 4.6 32 87-120 124-155 (278)
451 TIGR01472 gmd GDP-mannose 4,6- 27.7 81 0.0017 31.3 4.3 30 88-120 2-32 (343)
452 PRK06924 short chain dehydroge 27.7 89 0.0019 29.0 4.4 30 88-120 3-33 (251)
453 PRK07236 hypothetical protein; 27.7 81 0.0018 31.9 4.4 34 84-120 4-37 (386)
454 cd08265 Zn_ADH3 Alcohol dehydr 27.6 3.2E+02 0.007 27.6 8.8 29 88-119 206-235 (384)
455 PRK10537 voltage-gated potassi 27.5 81 0.0018 33.0 4.4 30 87-119 241-270 (393)
456 COG5495 Uncharacterized conser 26.9 46 0.00099 33.0 2.3 22 86-107 10-32 (289)
457 PLN02948 phosphoribosylaminoim 26.8 1.2E+02 0.0025 33.5 5.7 32 86-120 22-53 (577)
458 TIGR03855 NAD_NadX aspartate d 26.6 56 0.0012 31.6 2.9 30 176-205 37-66 (229)
459 cd05284 arabinose_DH_like D-ar 26.5 1.6E+02 0.0035 28.7 6.1 31 88-120 170-200 (340)
460 TIGR03570 NeuD_NnaD sugar O-ac 26.0 1.1E+02 0.0023 27.4 4.4 30 88-120 1-30 (201)
461 PRK07411 hypothetical protein; 26.0 28 0.00062 36.2 0.7 24 86-109 38-61 (390)
462 PRK15076 alpha-galactosidase; 26.0 57 0.0012 34.5 3.0 12 87-98 2-13 (431)
463 COG1091 RfbD dTDP-4-dehydrorha 25.9 84 0.0018 31.6 4.0 41 87-131 1-46 (281)
464 cd08248 RTN4I1 Human Reticulon 25.9 2.3E+02 0.005 27.6 7.2 31 87-120 164-195 (350)
465 KOG2250 Glutamate/leucine/phen 25.8 2.9E+02 0.0062 30.2 8.1 102 87-206 252-363 (514)
466 PRK07231 fabG 3-ketoacyl-(acyl 25.7 1E+02 0.0022 28.4 4.4 30 88-120 7-37 (251)
467 cd01078 NAD_bind_H4MPT_DH NADP 25.6 1.1E+02 0.0024 28.0 4.5 31 87-120 29-60 (194)
468 PLN00203 glutamyl-tRNA reducta 25.5 80 0.0017 34.4 4.1 33 87-121 267-299 (519)
469 PRK14852 hypothetical protein; 25.4 83 0.0018 37.0 4.3 24 86-109 332-355 (989)
470 PRK05586 biotin carboxylase; V 25.4 88 0.0019 32.8 4.3 30 87-119 3-32 (447)
471 KOG1399 Flavin-containing mono 25.3 74 0.0016 34.0 3.7 25 84-108 4-28 (448)
472 PF07991 IlvN: Acetohydroxy ac 25.2 98 0.0021 28.8 4.0 30 88-120 6-35 (165)
473 PRK10084 dTDP-glucose 4,6 dehy 24.5 63 0.0014 32.0 2.9 23 87-109 1-24 (352)
474 PRK07578 short chain dehydroge 24.5 1.4E+02 0.0031 26.8 5.0 28 88-119 2-30 (199)
475 PRK09009 C factor cell-cell si 24.5 1.1E+02 0.0025 28.0 4.5 31 87-118 1-32 (235)
476 cd08273 MDR8 Medium chain dehy 24.3 2.6E+02 0.0057 26.8 7.2 29 88-119 142-171 (331)
477 TIGR01161 purK phosphoribosyla 24.3 1E+02 0.0022 31.0 4.4 30 88-120 1-30 (352)
478 PRK05565 fabG 3-ketoacyl-(acyl 24.2 1.1E+02 0.0025 27.9 4.4 29 87-118 6-35 (247)
479 PLN02650 dihydroflavonol-4-red 24.2 95 0.0021 30.9 4.1 30 87-119 6-36 (351)
480 PRK07577 short chain dehydroge 24.2 1.1E+02 0.0025 27.9 4.4 29 88-119 5-34 (234)
481 cd01080 NAD_bind_m-THF_DH_Cycl 24.1 1.2E+02 0.0026 27.8 4.5 30 87-119 45-75 (168)
482 PRK07024 short chain dehydroge 23.9 1.2E+02 0.0026 28.5 4.6 31 86-119 2-33 (257)
483 PRK12825 fabG 3-ketoacyl-(acyl 23.9 1.2E+02 0.0025 27.7 4.4 23 87-109 7-30 (249)
484 PRK04965 NADH:flavorubredoxin 23.8 1E+02 0.0022 31.2 4.3 35 85-120 1-35 (377)
485 cd08286 FDH_like_ADH2 formalde 23.7 1.3E+02 0.0029 29.4 5.0 30 88-119 169-198 (345)
486 PRK08163 salicylate hydroxylas 23.5 1.1E+02 0.0023 30.9 4.3 32 85-119 3-34 (396)
487 PRK11150 rfaD ADP-L-glycero-D- 23.4 1.1E+02 0.0023 29.7 4.2 29 89-120 2-31 (308)
488 PF00289 CPSase_L_chain: Carba 23.3 94 0.002 26.6 3.3 32 87-121 3-34 (110)
489 cd08267 MDR1 Medium chain dehy 23.1 3.1E+02 0.0067 25.9 7.3 30 88-120 146-176 (319)
490 COG0621 MiaB 2-methylthioadeni 23.0 79 0.0017 33.8 3.4 66 185-270 168-239 (437)
491 cd08279 Zn_ADH_class_III Class 22.7 1.1E+02 0.0024 30.5 4.3 30 88-120 185-215 (363)
492 cd05282 ETR_like 2-enoyl thioe 22.5 1.6E+02 0.0035 28.1 5.3 30 88-120 141-171 (323)
493 PF01232 Mannitol_dh: Mannitol 22.3 1.1E+02 0.0023 27.4 3.6 35 87-121 1-38 (151)
494 TIGR01142 purT phosphoribosylg 22.3 1.1E+02 0.0025 30.7 4.3 30 88-120 1-30 (380)
495 TIGR02356 adenyl_thiF thiazole 22.2 1.1E+02 0.0023 28.8 3.8 23 87-109 22-44 (202)
496 PRK08618 ornithine cyclodeamin 22.2 1.2E+02 0.0025 30.7 4.3 33 87-121 128-160 (325)
497 cd05278 FDH_like Formaldehyde 22.2 1.8E+02 0.0039 28.3 5.6 29 88-118 170-198 (347)
498 PRK07074 short chain dehydroge 22.2 1.3E+02 0.0028 28.1 4.4 29 88-119 4-33 (257)
499 cd04886 ACT_ThrD-II-like C-ter 22.1 3.1E+02 0.0067 19.7 6.1 58 294-352 5-66 (73)
500 PRK12828 short chain dehydroge 22.1 1.3E+02 0.0029 27.3 4.3 30 88-120 9-39 (239)
No 1
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=5.3e-129 Score=990.72 Aligned_cols=397 Identities=90% Similarity=1.335 Sum_probs=378.6
Q ss_pred ccCCCCCCCCCcccccCCCCccCCCCccccccccccccccccccccccccccccccchhhhhhhccccccccCCCCcccc
Q 015291 3 SHSALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKE 82 (409)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (409)
+|+|||++|||+++|++|+++ .+|.+|++|+|||+++++++.+..++.+|++.++.|..++ .++..+.+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 71 (442)
T PLN02237 1 THAALASSRIPATTRLPSKAS--------HKRLEVAEFSGLRASSCVTFAKNAREASFFDVVASQLAPK-VAGSTPVRGE 71 (442)
T ss_pred CcchhcccCCccccccccccc--------cccccccccccccccccccccccccchhHHHHhhhhhhhh-hccccccccc
Confidence 699999999999999999886 3677899999999999999988889999999999999987 5567888999
Q ss_pred ccceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEE
Q 015291 83 TVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (409)
Q Consensus 83 ~~m~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~ 162 (409)
++|++||||||||||||.++|++.++.++++|||+|||+.++++++|||||||+||+|+++++..+++.|.|+|++|.++
T Consensus 72 ~~~~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~ 151 (442)
T PLN02237 72 TVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVV 151 (442)
T ss_pred ccceEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEE
Confidence 99999999999999999999998876335699999999999999999999999999999999853578899999999999
Q ss_pred ecCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEecCCccccCcCCCcEEecCCcch
Q 015291 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTT 242 (409)
Q Consensus 163 ~~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~~~dvP~vV~gVN~~~~~~~~~~IISnaSCTT 242 (409)
++++|.++||+++|+||||||||.|.+++++++|+++|||||+||+|++++++||||||||++.|++..++|||||||||
T Consensus 152 ~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCTT 231 (442)
T PLN02237 152 SNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTT 231 (442)
T ss_pred EcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchHH
Confidence 99999999999999999999999999999999999999999999999987678999999999999864378999999999
Q ss_pred hhhHHHHHHHHhhcCccEEEeeeeeccccccccccccchhhhhhhccccceecCCCchHHHHHHHccccCCCeeEEEEec
Q 015291 243 NCLAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRV 322 (409)
Q Consensus 243 n~Lapvlk~L~~~fGI~~~~mTTiha~Tg~Q~llD~~~~d~r~~Raaa~NIIP~~tGaakav~kVlPeL~gkl~g~avRV 322 (409)
|||+|++|+|||+|||++++|||||+||++|+++|++|+||||+|++++||||++||++|++++|||+|+|||+|+++||
T Consensus 232 NcLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~~~D~~h~D~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~GKl~g~A~RV 311 (442)
T PLN02237 232 NCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRV 311 (442)
T ss_pred HHHHHHHHHHHHhcCeeEEEEEEEEeccCCcccccCCCcccccccccccccccCCcchhhhhceecccCCCceeeEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceeEEEEEEEEcc-CCCCHHHHHHHHHHcccCCCCccccccCCCeEEecCCCCCcceeecCCCceeeCCCeEEEEEE
Q 015291 323 PTPNVSVVDLVVNVEK-KGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAW 401 (409)
Q Consensus 323 Pv~~gs~vdltv~lek-~~vs~eeI~~al~~aa~~~lkgil~~~e~p~VS~Df~~~~~S~i~d~~~t~~~~~~~vKl~~W 401 (409)
||++||++||+++++| + +++||||++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|+++|++|+||++|
T Consensus 312 Pt~nvS~vDLt~~l~k~~-~t~eein~~~k~aa~~~lkgil~y~~~plVS~Df~~~~~Ssi~D~~~t~v~~~~~vKv~aW 390 (442)
T PLN02237 312 PTPNVSVVDLVVNVEKKG-ITAEDVNAAFRKAADGPLKGILAVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVVAW 390 (442)
T ss_pred ccCCceEEEEEEEeCCCC-CCHHHHHHHHHHhhccccCCeeeeeCCceeeeeecCCCcceEEEcccCEEeCCCEEEEEEE
Confidence 9999999999999999 8 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 015291 402 YDNEWGYR 409 (409)
Q Consensus 402 yDNE~gys 409 (409)
||||||||
T Consensus 391 YDNEwGys 398 (442)
T PLN02237 391 YDNEWGYS 398 (442)
T ss_pred eCCchhHH
Confidence 99999996
No 2
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=1.3e-117 Score=900.78 Aligned_cols=370 Identities=76% Similarity=1.172 Sum_probs=351.2
Q ss_pred ccccccccccccccccccccccccccchhhhhhhccccccccCCCCccccccceeeEEEEcCChhHHHHHHHHHhCCCCC
Q 015291 33 KRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSP 112 (409)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ikVaInGfGrIGr~vlr~l~~~~~~~ 112 (409)
...+|++|+|||++++.++.+..++++| ++.|..++ .......+..++|++||||||||||||.++|+|++++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~kVaInGfGrIGR~vlr~l~~~~~~~ 86 (395)
T PLN03096 11 GSKGFSEFSGLKSSSAVTFGKRSDSLDF---VVFATSAV-SSSGGARRAVTEAKIKVAINGFGRIGRNFLRCWHGRKDSP 86 (395)
T ss_pred ccCcccccccccccCcccccccccchhh---hhhhhhhh-hccccccccccccccEEEEECcCHHHHHHHHHHHhCCCCC
Confidence 3469999999999998888887778887 67777665 4446678889999999999999999999999999886678
Q ss_pred ceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCCCCCCCccccCccEEEeCCCCCCChhh
Q 015291 113 LDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPG 192 (409)
Q Consensus 113 ~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~p~~l~W~~~gvDiVle~TG~f~s~e~ 192 (409)
++|+||||+.++++++|||+|||+||+|+++++..+|+.|.|||++|.+++++||+++||+++|+||||||||.|.++++
T Consensus 87 ~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~~dp~~~~w~~~gvDiVie~TG~f~s~~~ 166 (395)
T PLN03096 87 LDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSDRNPLNLPWGELGIDLVIEGTGVFVDREG 166 (395)
T ss_pred eEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEcCCcccccccccCCCEEEECcchhhhHHH
Confidence 99999999999999999999999999999999754578999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCCCCCeEEecCCccccCcCCCcEEecCCcchhhhHHHHHHHHhhcCccEEEeeeeeccccc
Q 015291 193 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGD 272 (409)
Q Consensus 193 a~~hl~aGakkVVISaps~~~dvP~vV~gVN~~~~~~~~~~IISnaSCTTn~Lapvlk~L~~~fGI~~~~mTTiha~Tg~ 272 (409)
+++|+++|||||+||+|.++ ++||||||||++.|++. ++||||||||||||+|++|+|||+|||++++|||||+||++
T Consensus 167 a~~hl~aGAkkV~iSap~~~-~~ptvV~GVN~~~l~~~-~~IISnaSCTTn~LAp~lkvL~~~fGI~~g~mTTiHa~T~~ 244 (395)
T PLN03096 167 AGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADDYKHS-DPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD 244 (395)
T ss_pred HHHHHHCCCEEEEeCCCCCC-CCCeEeCccCHHHhccC-CCEEECCchHHHHHHHHHHHHHHhcCeeEEEEEEEEccccc
Confidence 99999999999999999655 78999999999999875 88999999999999999999999999999999999999999
Q ss_pred cccccccchhhhhhhccccceecCCCchHHHHHHHccccCCCeeEEEEecCccceeEEEEEEEEccCCCCHHHHHHHHHH
Q 015291 273 QRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRK 352 (409)
Q Consensus 273 Q~llD~~~~d~r~~Raaa~NIIP~~tGaakav~kVlPeL~gkl~g~avRVPv~~gs~vdltv~lek~~vs~eeI~~al~~ 352 (409)
|+++|++|+|+||+|++++||||++||++|++++|||+|+||++++|+||||++||++||+++++++ +++||||++|++
T Consensus 245 Q~llD~~~~d~rr~Raaa~NiIPtsTGaakav~kVlP~L~gkl~g~avRVPv~~gs~~dltv~~~~~-~t~eev~~al~~ 323 (395)
T PLN03096 245 QRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVEKK-TFAEEVNAAFRD 323 (395)
T ss_pred cccccCCCCccccchhhhccccccCCCcchhhhhcccccCCcEEEEEEEccccceEEEEEEEEECCC-CCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cccCCCCccccccCCCeEEecCCCCCcceeecCCCceeeCCCeEEEEEEeCCCCCCC
Q 015291 353 AAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYR 409 (409)
Q Consensus 353 aa~~~lkgil~~~e~p~VS~Df~~~~~S~i~d~~~t~~~~~~~vKl~~WyDNE~gys 409 (409)
+++++|||||+|+|+|+||+||+|++||+|||+.+|++++++|+||++|||||||||
T Consensus 324 aa~~~l~gil~~~~~p~VS~Df~~~~~Ssi~d~~~t~v~~~~~vKv~~WYDNE~Gys 380 (395)
T PLN03096 324 AAEKELKGILAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYS 380 (395)
T ss_pred hhhccccceEEEeCCCEeeeeecCCCCceEEEcccCEEeCCCEEEEEEEecCchhHH
Confidence 999999999999999999999999999999999999999999999999999999996
No 3
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=4.9e-117 Score=884.58 Aligned_cols=324 Identities=47% Similarity=0.779 Sum_probs=307.7
Q ss_pred cceeeEEEEcCChhHHHHHHHHHhCC--CCCceEEEEeC-CCChhhhhhhhcccccccccCceEEEe-------cCCeEE
Q 015291 84 VAKLKVAINGFGRIGRNFLRCWHGRK--DSPLDVVVVND-SGGVKNASHLLKYDSLLGTFKADVKIV-------DNETIS 153 (409)
Q Consensus 84 ~m~ikVaInGfGrIGr~vlr~l~~~~--~~~~~vVaInd-~~~~~~~a~Ll~yDS~~G~f~~~v~~~-------~~~~l~ 153 (409)
+|++||||||||||||.++|++.++. .++++|||||| .+++++++|||||||+||+|+++++.+ +++.|.
T Consensus 1 ~m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~ 80 (361)
T PTZ00434 1 MAPIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLV 80 (361)
T ss_pred CCceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEE
Confidence 36789999999999999999988752 24699999999 589999999999999999999999862 368899
Q ss_pred ECCeEEEEE-ecCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEecCCccccCcCCC
Q 015291 154 VDGKLIKVV-SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVA 232 (409)
Q Consensus 154 v~gk~I~v~-~~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~~~dvP~vV~gVN~~~~~~~~~ 232 (409)
+||++|.++ +++||+++||+++|+||||||||.|.+++.+++|+++||||||||||+++ +.||||+|||++.|++..+
T Consensus 81 ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d-~~~t~V~GVN~~~y~~~~~ 159 (361)
T PTZ00434 81 VNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASG-GAKTIVMGVNQHEYSPTEH 159 (361)
T ss_pred ECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCC-CCceEEEcCChHHcCcccC
Confidence 999999986 99999999999999999999999999999999999999999999999876 4589999999999987337
Q ss_pred cEEecCCcchhhhHHHHHHH-HhhcCccEEEeeeeecccccccccccc-chhhhhhhccccceecCCCchHHHHHHHccc
Q 015291 233 NIVSNASCTTNCLAPFVKVM-DEELGIVKGAMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVSLVMPQ 310 (409)
Q Consensus 233 ~IISnaSCTTn~Lapvlk~L-~~~fGI~~~~mTTiha~Tg~Q~llD~~-~~d~r~~Raaa~NIIP~~tGaakav~kVlPe 310 (409)
+||||+|||||||||++|+| ||+|||++|+|||+|+||++|+++|++ |+||||+|++++||||++||++|++++|||+
T Consensus 160 ~IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~~~D~~~~kD~Rr~Raaa~nIIPtsTGAAkAv~~VlP~ 239 (361)
T PTZ00434 160 HVVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPS 239 (361)
T ss_pred cEEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcccccCcCcccccccccccccCccCCcchhhhhceeccc
Confidence 89999999999999999999 799999999999999999999999999 5999999999999999999999999999999
Q ss_pred cCCCeeEEEEecCccceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCccccccCCCeEEecCCCCCcceeecCCCcee
Q 015291 311 LKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMV 390 (409)
Q Consensus 311 L~gkl~g~avRVPv~~gs~vdltv~lek~~vs~eeI~~al~~aa~~~lkgil~~~e~p~VS~Df~~~~~S~i~d~~~t~~ 390 (409)
|+|||+|+++||||++||++||+++++|+ +++||||++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++
T Consensus 240 L~GKl~G~a~RVPt~nvS~vDLt~~l~k~-~t~eein~a~k~aa~~~lkgIl~y~~~plVS~Df~g~~~Ssi~D~~~t~v 318 (361)
T PTZ00434 240 TKGKLTGMSFRVPTPDVSVVDLTFRATRD-TSIQEIDAAIKRASQTYMKGILGFTDDELVSADFINDNRSSIYDSKATLQ 318 (361)
T ss_pred cCCceeeEEEecccCcEeEEEEEEEeCCC-CCHHHHHHHHHHhhhccccCcccccCCCccccccCCCCCCeEEEhhhCeE
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred eC----CCeEEEEEEeCCCCCCC
Q 015291 391 MG----DDMVKVVAWYDNEWGYR 409 (409)
Q Consensus 391 ~~----~~~vKl~~WyDNE~gys 409 (409)
++ ++++|+++|||||||||
T Consensus 319 ~~~~~~~~~vKv~~WYDNEwGys 341 (361)
T PTZ00434 319 NNLPGERRFFKIVSWYDNEWGYS 341 (361)
T ss_pred eccCCCCCEEEEEEEecCchHHH
Confidence 96 48999999999999996
No 4
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=4.2e-113 Score=854.59 Aligned_cols=321 Identities=70% Similarity=1.147 Sum_probs=310.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~ 166 (409)
+||||||||||||+++|++.++++++++||||||+.++++++|||||||+||+|+++++. +++.|.|||++|.++++++
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~-~~~~l~v~g~~I~v~~~~d 80 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISA-DENSITVNGKTIKCVSDRN 80 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEE-cCCEEEECCEEEEEEEcCC
Confidence 699999999999999999887633469999999999999999999999999999999997 5789999999999999999
Q ss_pred CCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEecCCccccCcCCCcEEecCCcchhhhH
Q 015291 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLA 246 (409)
Q Consensus 167 p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~~~dvP~vV~gVN~~~~~~~~~~IISnaSCTTn~La 246 (409)
|+++||+++|+|+||||||.|++++++++|+++|||||++|+|++++|+||||||||++.|++.+++||||||||||||+
T Consensus 81 p~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn~La 160 (337)
T PRK07403 81 PLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNCLA 160 (337)
T ss_pred cccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHHHHH
Confidence 99999999999999999999999999999999999999999998887889999999999998533789999999999999
Q ss_pred HHHHHHHhhcCccEEEeeeeeccccccccccccchhhhhhhccccceecCCCchHHHHHHHccccCCCeeEEEEecCccc
Q 015291 247 PFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTPN 326 (409)
Q Consensus 247 pvlk~L~~~fGI~~~~mTTiha~Tg~Q~llD~~~~d~r~~Raaa~NIIP~~tGaakav~kVlPeL~gkl~g~avRVPv~~ 326 (409)
|++|+||++|||++++|||||+||++|+++|++|+||||+|++++||||++||++|+++++||+|+|||+|+|+||||++
T Consensus 161 p~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~~~~d~r~~raaa~NiIPt~tGaakav~~vlP~L~gki~g~avRVPt~~ 240 (337)
T PRK07403 161 PIAKVLHDNFGIIKGTMTTTHSYTGDQRILDASHRDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALRVPTPN 240 (337)
T ss_pred HHHHHHHHhcCeeEEEEEEEeeecCCcccccccccccccccccccccccCCcchhhhhhhcCcccCCcEEEEEEEeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCccccccCCCeEEecCCCCCcceeecCCCceeeCCCeEEEEEEeCCCC
Q 015291 327 VSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEW 406 (409)
Q Consensus 327 gs~vdltv~lek~~vs~eeI~~al~~aa~~~lkgil~~~e~p~VS~Df~~~~~S~i~d~~~t~~~~~~~vKl~~WyDNE~ 406 (409)
+|++||+++++|+ +++||||++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++|+|+++||||||
T Consensus 241 vs~~dl~v~l~k~-~t~eeI~~~~~~as~~~l~gil~~~~~~~VS~D~~~~~~s~i~D~~~t~v~~~~~~k~~~WyDNE~ 319 (337)
T PRK07403 241 VSVVDLVVQVEKR-TITEQVNEVLKDASEGPLKGILEYSDLPLVSSDYRGTDASSIVDASLTMVMGGDMVKVIAWYDNEW 319 (337)
T ss_pred cEEEEEEEEECCC-CCHHHHHHHHHHHhhCccccccCeecCCEeeeeecCCCCCEEEEcccCEEecCCEEEEEEEecCch
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 015291 407 GYR 409 (409)
Q Consensus 407 gys 409 (409)
|||
T Consensus 320 Gys 322 (337)
T PRK07403 320 GYS 322 (337)
T ss_pred hHH
Confidence 996
No 5
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=7.1e-112 Score=844.53 Aligned_cols=318 Identities=48% Similarity=0.809 Sum_probs=306.8
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEec
Q 015291 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (409)
Q Consensus 85 m~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~ 164 (409)
|++||||||||||||.++|++.++ ++++||||||++++++++|||||||+||+|+++++. +++.|.|+|++|.++++
T Consensus 1 m~~~i~inGfGRIGr~~~r~~~~~--~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~-~~~~l~v~g~~I~v~~~ 77 (331)
T PRK15425 1 MTIKVGINGFGRIGRIVFRAAQKR--SDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEV-KDGHLIVNGKKIRVTAE 77 (331)
T ss_pred CceEEEEEeeChHHHHHHHHHHHC--CCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEe-cCCEEEECCeEEEEEEc
Confidence 558999999999999999998875 469999999999999999999999999999999998 57889999999999999
Q ss_pred CCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEecCCccccCcCCCcEEecCCcchhh
Q 015291 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNC 244 (409)
Q Consensus 165 ~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~~~dvP~vV~gVN~~~~~~~~~~IISnaSCTTn~ 244 (409)
++|+++||+++|+|+||||||.|+++++|++|+++|||||++|+|.+ +++|+||||||++.|+. ++|||||||||||
T Consensus 78 ~dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~-~~vp~vV~gVN~~~~~~--~~IISnaSCtTn~ 154 (331)
T PRK15425 78 RDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSK-DNTPMFVKGANFDKYAG--QDIVSNASCTTNC 154 (331)
T ss_pred CChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCC-CCCCEEEcccCHHHcCC--CCEEECCCcHHHH
Confidence 99999999999999999999999999999999999999999999954 37899999999999964 6899999999999
Q ss_pred hHHHHHHHHhhcCccEEEeeeeecccccccccccc-chhhhhhhccccceecCCCchHHHHHHHccccCCCeeEEEEecC
Q 015291 245 LAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVP 323 (409)
Q Consensus 245 Lapvlk~L~~~fGI~~~~mTTiha~Tg~Q~llD~~-~~d~r~~Raaa~NIIP~~tGaakav~kVlPeL~gkl~g~avRVP 323 (409)
|+|++|+||++|||++++|||||+||++|+++|++ ++|+||+|++++||||++||++++++||||+|+||++|+|+|||
T Consensus 155 Lapvlk~L~~~fgI~~g~mTTvha~T~~q~llD~~~~~d~r~~R~aa~NiIPt~tGaa~av~kIlP~L~gkl~g~avRVP 234 (331)
T PRK15425 155 LAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVP 234 (331)
T ss_pred HHHHHHHHHHhCCeEEEEEEEEEeccCccccccCCCCcccccCcchhhceecccCCchHHHHhhccccCCeEEEEEEEec
Confidence 99999999999999999999999999999999997 48999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCccccccCCCeEEecCCCCCcceeecCCCceeeCCCeEEEEEEeC
Q 015291 324 TPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYD 403 (409)
Q Consensus 324 v~~gs~vdltv~lek~~vs~eeI~~al~~aa~~~lkgil~~~e~p~VS~Df~~~~~S~i~d~~~t~~~~~~~vKl~~WyD 403 (409)
|++||++||+++++++ +++||||++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++++|+++|||
T Consensus 235 v~~gs~~dltv~l~~~-~t~eev~~al~~aa~~~l~gil~~~~~~~VS~D~~~~~~ssi~d~~~t~v~~~~~~k~~~WyD 313 (331)
T PRK15425 235 TPNVSVVDLTVRLEKA-ATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYD 313 (331)
T ss_pred ccCeEEEEEEEEECCC-CCHHHHHHHHHHHhhccccccccccCCcEeeeecCCCCcceEEEcccCEEecCCEEEEEEEec
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 015291 404 NEWGYR 409 (409)
Q Consensus 404 NE~gys 409 (409)
||||||
T Consensus 314 NE~gys 319 (331)
T PRK15425 314 NETGYS 319 (331)
T ss_pred CchhHH
Confidence 999996
No 6
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.9e-111 Score=840.92 Aligned_cols=319 Identities=48% Similarity=0.803 Sum_probs=307.4
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC-CCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEe
Q 015291 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (409)
Q Consensus 85 m~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd-~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~ 163 (409)
|++||||||||||||.++|++.++ ++++|||||| .+++++++|||||||+||+|++++++ +++.|.+||++|++++
T Consensus 1 m~~ki~INGfGRIGr~v~r~~~~~--~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~-~~~~l~i~g~~i~~~~ 77 (337)
T PTZ00023 1 MVVKLGINGFGRIGRLVFRAALER--EDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSV-TDGFLMIGSKKVHVFF 77 (337)
T ss_pred CceEEEEECcChHHHHHHHHHHhc--CCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEe-cCCEEEECCeEEEEEe
Confidence 568999999999999999998876 4699999999 47999999999999999999999998 5788999999999999
Q ss_pred cCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEecCCccccCcCCCcEEecCCcchh
Q 015291 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTN 243 (409)
Q Consensus 164 ~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~~~dvP~vV~gVN~~~~~~~~~~IISnaSCTTn 243 (409)
+++|.++||++.|+|+||||||.|+++++++.|+++|||+|++|+|.++ ++|+||||||++.|+.. ++||||||||||
T Consensus 78 ~~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~-~vp~vV~gVN~~~~~~~-~~IISnasCTTn 155 (337)
T PTZ00023 78 EKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKD-DTPIYVMGVNHTQYDKS-QRIVSNASCTTN 155 (337)
T ss_pred CCChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCC-CCCeEEcccCHHHhCCC-CCEEECCccHHH
Confidence 9999999999999999999999999999999999999999999998654 78999999999999875 789999999999
Q ss_pred hhHHHHHHHHhhcCccEEEeeeeecccccccccccc---chhhhhhhccccceecCCCchHHHHHHHccccCCCeeEEEE
Q 015291 244 CLAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDAS---HRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIAL 320 (409)
Q Consensus 244 ~Lapvlk~L~~~fGI~~~~mTTiha~Tg~Q~llD~~---~~d~r~~Raaa~NIIP~~tGaakav~kVlPeL~gkl~g~av 320 (409)
||+|++|+||++|||+++.|||||+||++|.++|++ ++||||+|++++||||++||+++++++|||+|+||++++|+
T Consensus 156 ~Lap~lk~L~~~fgI~~~~~TT~ha~T~~Q~lld~~~~~~kd~r~~r~~a~NiIP~~tGaakav~kVlPeL~gkl~g~av 235 (337)
T PTZ00023 156 CLAPLAKVVNDKFGIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAF 235 (337)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEEecCCCceecCCcCcccCCCcccceeeccccccCCCcchhhhheecccCCcEEEEEE
Confidence 999999999999999999999999999999999987 48999999999999999999999999999999999999999
Q ss_pred ecCccceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCccccccCCCeEEecCCCCCcceeecCCCceeeCCCeEEEEE
Q 015291 321 RVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVA 400 (409)
Q Consensus 321 RVPv~~gs~vdltv~lek~~vs~eeI~~al~~aa~~~lkgil~~~e~p~VS~Df~~~~~S~i~d~~~t~~~~~~~vKl~~ 400 (409)
||||++||++||+++++++ +++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++|+|+++
T Consensus 236 RVPt~~~s~~dltv~l~k~-vt~eev~~al~~aa~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~v~~~~~~k~~~ 314 (337)
T PTZ00023 236 RVPVPDVSVVDLTCKLAKP-AKYEEIVAAVKKAAEGPLKGILGYTDDEVVSSDFVHDKRSSIFDVKAGIALNDTFVKLVS 314 (337)
T ss_pred EecccCeEEEEEEEEECCC-CCHHHHHHHHHHHhcccccCCcCccCCCeeeeecCCCCCCeEEEcccCeEecCCEEEEEE
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCC
Q 015291 401 WYDNEWGYR 409 (409)
Q Consensus 401 WyDNE~gys 409 (409)
|||||||||
T Consensus 315 WyDNE~gys 323 (337)
T PTZ00023 315 WYDNEWGYS 323 (337)
T ss_pred EecCchhHH
Confidence 999999996
No 7
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=3.2e-110 Score=835.02 Aligned_cols=320 Identities=57% Similarity=0.907 Sum_probs=308.4
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEec
Q 015291 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (409)
Q Consensus 85 m~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~ 164 (409)
|++||||||||||||.++|++.++ ++++||||||+.++++++|||||||+||+|+++++. +++.|.|||++|.++++
T Consensus 1 m~~ki~INGfGRIGR~~~r~~~~~--~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~-~~~~l~v~g~~I~v~~~ 77 (343)
T PRK07729 1 MKTKVAINGFGRIGRMVFRKAIKE--SAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEA-FEDHLLVDGKKIRLLNN 77 (343)
T ss_pred CceEEEEECcChHHHHHHHHHhhc--CCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEe-cCCEEEECCEEEEEEEc
Confidence 678999999999999999998876 469999999999999999999999999999999998 57899999999999999
Q ss_pred CCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEecCCccccCcCCCcEEecCCcchhh
Q 015291 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNC 244 (409)
Q Consensus 165 ~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~~~dvP~vV~gVN~~~~~~~~~~IISnaSCTTn~ 244 (409)
++|+++||++.|+||||||||.|++++++++|+++|||||++|+|++++|+| +|||||++.|++..++|||||||||||
T Consensus 78 ~dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~-lV~gVN~~~~~~~~~~IISnaSCTTn~ 156 (343)
T PRK07729 78 RDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVT-IVVGVNEDQLDIEKHTIISNASCTTNC 156 (343)
T ss_pred CChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCc-EEecccHHHhccCCCCEEECCchHHHH
Confidence 9999999999999999999999999999999999999999999998875654 588999999986337899999999999
Q ss_pred hHHHHHHHHhhcCccEEEeeeeeccccccccccccchhhhhhhccccceecCCCchHHHHHHHccccCCCeeEEEEecCc
Q 015291 245 LAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPT 324 (409)
Q Consensus 245 Lapvlk~L~~~fGI~~~~mTTiha~Tg~Q~llD~~~~d~r~~Raaa~NIIP~~tGaakav~kVlPeL~gkl~g~avRVPv 324 (409)
|+|++|+||++|||++++|||||+||++|+++|++|+||||+|++++||||++||+++++++|||+|+|||+|+|+||||
T Consensus 157 Lap~lk~L~~~fgI~~~~mTTiha~T~~Q~~~D~~~~d~rr~R~a~~niiPtstgaa~ai~~viP~l~gkl~g~avRVPt 236 (343)
T PRK07729 157 LAPVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPHKDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPT 236 (343)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEecccCcccccccchhhhhcccccccceecCCCcchhhHHHhccccCCeEEEEEEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCccccccCCCeEEecCCCCCcceeecCCCceeeCCCeEEEEEEeCC
Q 015291 325 PNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDN 404 (409)
Q Consensus 325 ~~gs~vdltv~lek~~vs~eeI~~al~~aa~~~lkgil~~~e~p~VS~Df~~~~~S~i~d~~~t~~~~~~~vKl~~WyDN 404 (409)
++||++||+++++++ +++||||++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++++|+++||||
T Consensus 237 ~~~s~~dltv~l~k~-~t~eev~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~D~~~t~v~~~~~~K~~~WYDN 315 (343)
T PRK07729 237 PNVSLVDLVVDVKRD-VTVEEINEAFKTAANGALKGILEFSEEPLVSIDFNTNTHSAIIDGLSTMVMGDRKVKVLAWYDN 315 (343)
T ss_pred cCeEEEEEEEEECCC-CCHHHHHHHHHHHhhCchhhccCccCCCccccccCCCCcceEEEcccCeEecCCEEEEEEEecC
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 015291 405 EWGYR 409 (409)
Q Consensus 405 E~gys 409 (409)
|||||
T Consensus 316 E~Gys 320 (343)
T PRK07729 316 EWGYS 320 (343)
T ss_pred chHHH
Confidence 99996
No 8
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=1.2e-108 Score=839.64 Aligned_cols=317 Identities=52% Similarity=0.853 Sum_probs=305.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC-CChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~-~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~ 165 (409)
+||||||||||||.++|++.++ ++++||+|||+ .+.++++|||||||+||+|++++++.+++.|.|+|++|.|++++
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~--~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~ 163 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSR--DDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKR 163 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhc--CCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecC
Confidence 7999999999999999998864 35999999995 79999999999999999999999863478899999999999999
Q ss_pred CCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEecCCccccCcCCCcEEecCCcchhhh
Q 015291 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (409)
Q Consensus 166 ~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~~~dvP~vV~gVN~~~~~~~~~~IISnaSCTTn~L 245 (409)
+|+++||+++|+||||||||.|++++++++|+++||||||||+|++ |+|+||||||++.|+.. ++||||||||||||
T Consensus 164 dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~--dvPlvV~gVN~~~l~~~-~~IISnaSCTTn~L 240 (421)
T PLN02272 164 DPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSA--DAPMFVVGVNEKTYKPN-MNIVSNASCTTNCL 240 (421)
T ss_pred CcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCC--CCCeEEeccCHHHhCCC-CCeeeCCCcHHHHH
Confidence 9999999999999999999999999999999999999999999965 68999999999999875 78999999999999
Q ss_pred HHHHHHHHhhcCccEEEeeeeecccccccccccc-chhhhhhhccccceecCCCchHHHHHHHccccCCCeeEEEEecCc
Q 015291 246 APFVKVMDEELGIVKGAMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPT 324 (409)
Q Consensus 246 apvlk~L~~~fGI~~~~mTTiha~Tg~Q~llD~~-~~d~r~~Raaa~NIIP~~tGaakav~kVlPeL~gkl~g~avRVPv 324 (409)
+|++|+||++|||++++|||||+||++|+++|++ ++|+||+|++++||||++||++++++||||+|+|||+++|+||||
T Consensus 241 ap~lk~L~~~fGI~~g~mTTvha~T~tQ~llD~~~~~d~r~~R~aa~NIIPt~tGaakav~kVLP~L~gkl~gtaVRVPv 320 (421)
T PLN02272 241 APLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPT 320 (421)
T ss_pred HHHHHHHHHhCCeEEEEEEEEEeccCccccccCccccccccCCCcccccccCCCccchhhhhcccccCCcEEEEEEEecc
Confidence 9999999999999999999999999999999997 689999999999999999999999999999999999999999999
Q ss_pred cceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCccccccCCCeEEecCCCCCcceeecCCCceeeCCCeEEEEEEeCC
Q 015291 325 PNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDN 404 (409)
Q Consensus 325 ~~gs~vdltv~lek~~vs~eeI~~al~~aa~~~lkgil~~~e~p~VS~Df~~~~~S~i~d~~~t~~~~~~~vKl~~WyDN 404 (409)
++||++||+++++++ +++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++++||++||||
T Consensus 321 ~~gs~~dltv~lek~-~s~eev~~alk~a~~~~l~gil~y~~~~lVS~Df~~~~~ssi~D~~~t~~~~~~~vKv~~WYDN 399 (421)
T PLN02272 321 PNVSVVDLTCRLEKS-ASYEDVKAAIKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDN 399 (421)
T ss_pred CceEEEEEEEEECCC-CCHHHHHHHHHHHhccccccccccccCCEeeeecCCCCCcEEEEcccCeEecCCEEEEEEEecC
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 015291 405 EWGYR 409 (409)
Q Consensus 405 E~gys 409 (409)
|||||
T Consensus 400 EwGys 404 (421)
T PLN02272 400 EWGYS 404 (421)
T ss_pred chhHH
Confidence 99996
No 9
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=5.6e-108 Score=816.63 Aligned_cols=318 Identities=59% Similarity=0.929 Sum_probs=306.2
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCC-eEEECCe-EEEEEecC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNE-TISVDGK-LIKVVSNR 165 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~-~l~v~gk-~I~v~~~~ 165 (409)
||||||||||||.++|++.+++.++++||||||+.++++++|||+|||+||+|++++++ .++ .|.|+|+ .|.+++++
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~-~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTA-DEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEe-cCCceEEECCeEEEEEEecC
Confidence 79999999999999999887632469999999999999999999999999999999998 467 7999999 99999999
Q ss_pred CCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEecCCccccCcCCCcEEecCCcchhhh
Q 015291 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (409)
Q Consensus 166 ~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~~~dvP~vV~gVN~~~~~~~~~~IISnaSCTTn~L 245 (409)
+|+++||+++|+||||||||.|+++++++.|+++|||||++|+|++++ +||||||||++.|+.+ ++||||||||||||
T Consensus 80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~-~plvV~gVN~~~~~~~-~~IISn~sCtTn~L 157 (327)
T TIGR01534 80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGD-APTIVYGVNHDEYDPE-ERIISNASCTTNCL 157 (327)
T ss_pred CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCC-CCeecCCCCHHHhCCC-CCEEecCCchHHHH
Confidence 999999999999999999999999999999999999999999998874 8999999999999875 78999999999999
Q ss_pred HHHHHHHHhhcCccEEEeeeeeccccccccccccchhhhhhhccccceecCCCchHHHHHHHccccCCCeeEEEEecCcc
Q 015291 246 APFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTP 325 (409)
Q Consensus 246 apvlk~L~~~fGI~~~~mTTiha~Tg~Q~llD~~~~d~r~~Raaa~NIIP~~tGaakav~kVlPeL~gkl~g~avRVPv~ 325 (409)
+|+||+||++|||+++.|||||++|++|+++|++++|+||+|++++||||++||+++++++|||+|+||++++|+||||+
T Consensus 158 ap~lk~L~~~fgI~~~~~TTiha~t~~q~lld~~~~d~r~~r~~a~NiIP~~tg~ak~~~kvlP~L~gkv~~~avRVPv~ 237 (327)
T TIGR01534 158 APLAKVLDEAFGIVSGLMTTVHSYTNDQNLVDGPHKDLRRARAAALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTP 237 (327)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEeecCccccccCCCCCCcCceEeEeeeeccCCChHHHHhhccccCCCeEEEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCccccccCCCeEEecCCCCCcceeecCCCceee--CCCeEEEEEEeC
Q 015291 326 NVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVM--GDDMVKVVAWYD 403 (409)
Q Consensus 326 ~gs~vdltv~lek~~vs~eeI~~al~~aa~~~lkgil~~~e~p~VS~Df~~~~~S~i~d~~~t~~~--~~~~vKl~~WyD 403 (409)
+||++||+++++++ +++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|+++ |++++||++|||
T Consensus 238 ~gs~~dl~v~~~~~-~t~eev~~al~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~~~~k~~~WyD 316 (327)
T TIGR01534 238 NVSLVDLVLNLEKD-TTKEEVNAALKEAAEGSLKGVLGYTEDELVSSDFIGSPYSSIVDATATKVTGLGGSLVKVVAWYD 316 (327)
T ss_pred CeEEEEEEEEECCC-CCHHHHHHHHHhhhhcccCceeeeeCCCeeeeecCCCCcceEEEcccCeEEcCCCCEEEEEEEeC
Confidence 99999999999999 999999999999999999999999999999999999999999999999995 489999999999
Q ss_pred CCCCCC
Q 015291 404 NEWGYR 409 (409)
Q Consensus 404 NE~gys 409 (409)
||||||
T Consensus 317 NE~gys 322 (327)
T TIGR01534 317 NEWGYS 322 (327)
T ss_pred CCceee
Confidence 999997
No 10
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.1e-108 Score=807.28 Aligned_cols=319 Identities=58% Similarity=0.931 Sum_probs=309.6
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~ 165 (409)
++||||||||||||+++|++.+++ .++|||||||+.+++++||||+|||+||+|.++++. +++.+.|+|+.|+++.++
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~-~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~-~~~~~~v~g~~I~v~~~~ 78 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERD-GDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEV-KDDALVVNGKGIKVLAER 78 (335)
T ss_pred CcEEEEecCcHHHHHHHHHHHhCC-CCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccc-cCCeEEECCceEEEEecC
Confidence 379999999999999999999985 269999999999999999999999999999999986 578899999999999999
Q ss_pred CCCCCCccccCccEEEeCCCCCCChhhHHHHHHc-CCCEEEEeCCCCCCCCCeEEecCCccccCcCCCcEEecCCcchhh
Q 015291 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQA-GAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNC 244 (409)
Q Consensus 166 ~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~a-GakkVVISaps~~~dvP~vV~gVN~~~~~~~~~~IISnaSCTTn~ 244 (409)
+|++|||+++|+|+|+||||.|+++|.+++|+++ |||||+||+|.++ ++++||+|||++.|++. ++||||+||||||
T Consensus 79 ~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~-~~~~vv~gvn~~~~~~~-~~iVsnaSCTTNc 156 (335)
T COG0057 79 DPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKD-DVATVVYGVNHNYYDAG-HTIVSNASCTTNC 156 (335)
T ss_pred ChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCC-CccEEEEeccccccCCC-CcEEEEccchhhh
Confidence 9999999999999999999999999999999998 5999999999986 48999999999999984 8999999999999
Q ss_pred hHHHHHHHHhhcCccEEEeeeeeccccccccccccchhhhhhhccccceecCCCchHHHHHHHccccCCCeeEEEEecCc
Q 015291 245 LAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPT 324 (409)
Q Consensus 245 Lapvlk~L~~~fGI~~~~mTTiha~Tg~Q~llD~~~~d~r~~Raaa~NIIP~~tGaakav~kVlPeL~gkl~g~avRVPv 324 (409)
|+|++|+|+|+|||++++|||+|+||++|+++|+||+||||+|++++||||++||++|++++|||+|+|||+|+++||||
T Consensus 157 Lap~~kvl~d~fGI~~g~mTtVh~~T~dQ~~~dgph~~~rr~raa~~niIp~sTgaAkav~~VlP~L~gKl~g~A~RVPt 236 (335)
T COG0057 157 LAPVAKVLNDAFGIEKGLMTTVHAYTNDQKLVDGPHKDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPT 236 (335)
T ss_pred hHHHHHHHHHhcCeeEEEEEEEEcccCCCccccCcccchhhhccccCCCCcCCCcchhhhhhhCcccCCceeeEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCccccccCCCeEEecCCCCCcceeecCCCceeeCCCeEEEEEEeCC
Q 015291 325 PNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDN 404 (409)
Q Consensus 325 ~~gs~vdltv~lek~~vs~eeI~~al~~aa~~~lkgil~~~e~p~VS~Df~~~~~S~i~d~~~t~~~~~~~vKl~~WyDN 404 (409)
+++|++||+++++|+ +++||||++|++++++.|||+++|+|+|+||+||+|++||+|||+++|++++++++|+++||||
T Consensus 237 ~~vs~~dl~v~l~k~-~t~eeIn~alk~as~~~lkg~~~y~e~~~Vs~D~~~~~~ssI~d~~~t~~~~~~~vk~~~wydN 315 (335)
T COG0057 237 PNVSVVDLTVELEKE-VTVEEINAALKAASEIGLKGILGYTEDPLVSSDFNGDPHSSIFDASATIVLGGNLVKLVAWYDN 315 (335)
T ss_pred CCcEEEEEEEEeCCC-CCHHHHHHHHHHhhcccccceeeeEeccccccccCCCcceeEEEccceEeccCcEEEEEEEEec
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999899999999999
Q ss_pred CCCCC
Q 015291 405 EWGYR 409 (409)
Q Consensus 405 E~gys 409 (409)
||||+
T Consensus 316 E~gys 320 (335)
T COG0057 316 EWGYS 320 (335)
T ss_pred cccch
Confidence 99996
No 11
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-107 Score=815.69 Aligned_cols=319 Identities=42% Similarity=0.749 Sum_probs=308.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCC-CCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~-~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~ 165 (409)
+||||||||||||.++|+|+++++ ++++||||||+.++++++|||||||+||+|+++++. +|+.|.|||++|.+++++
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~-~~~~l~v~g~~i~v~~~~ 80 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQ-ERDQLFVGDDAIRLLHER 80 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEe-cCCEEEECCEEEEEEEcC
Confidence 699999999999999999998743 469999999999999999999999999999999997 588999999999999999
Q ss_pred CCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCC-CCCCCeEEecCCccccCcCCCcEEecCCcchhh
Q 015291 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK-GADIPTYVVGVNEKDYDHEVANIVSNASCTTNC 244 (409)
Q Consensus 166 ~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~-~~dvP~vV~gVN~~~~~~~~~~IISnaSCTTn~ 244 (409)
+|+++||++.|+|+||||||.|.+++++++|+++|||+|++|+|++ +++ ++||||||++.|++. ++|||||||||||
T Consensus 81 ~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~-~~vV~gVN~~~~~~~-~~IISnasCTTn~ 158 (336)
T PRK13535 81 DIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLD-ATVVYGVNHDQLRAE-HRIVSNASCTTNC 158 (336)
T ss_pred CcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCC-CeEEeCcCHHHhCcC-CCEEECCchHHHH
Confidence 9999999999999999999999999999999999999999999975 534 599999999999875 8899999999999
Q ss_pred hHHHHHHHHhhcCccEEEeeeeeccccccccccccchhhhhhhccccceecCCCchHHHHHHHccccCCCeeEEEEecCc
Q 015291 245 LAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPT 324 (409)
Q Consensus 245 Lapvlk~L~~~fGI~~~~mTTiha~Tg~Q~llD~~~~d~r~~Raaa~NIIP~~tGaakav~kVlPeL~gkl~g~avRVPv 324 (409)
|+|++|+||++|||++++|||||+||++|+++|++|+|+||+|++++||||++||++++++||||+|+||++++|+||||
T Consensus 159 Lap~lk~L~~~fgI~~~~mTT~ha~t~~Q~~vD~~~~d~rr~r~~a~NiIP~~tgaa~a~~kilP~l~gkv~~~avRVPv 238 (336)
T PRK13535 159 IIPVIKLLDDAFGIESGTVTTIHSAMNDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAISVRVPT 238 (336)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEEhhcCCcchhhchhhccccccEeeeccccCccHHHhhhhhcccCCCCcEEEEEEEeCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCccccccCCCeEEecCCCCCcceeecCCCceeeCCCeEEEEEEeCC
Q 015291 325 PNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDN 404 (409)
Q Consensus 325 ~~gs~vdltv~lek~~vs~eeI~~al~~aa~~~lkgil~~~e~p~VS~Df~~~~~S~i~d~~~t~~~~~~~vKl~~WyDN 404 (409)
++||++||+++++++ +++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++|+||++||||
T Consensus 239 ~~gs~~dl~v~~~~~-~t~eei~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDN 317 (336)
T PRK13535 239 INVTAIDLSVTVKKP-VKVNEVNQLLQKAAQGAFHGIVDYTELPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDN 317 (336)
T ss_pred cCcEEEEEEEEECCC-CCHHHHHHHHHHhhhccccccccccCCCccccccCCCCcceEEEcccCEEECCCEEEEEEEEcC
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 015291 405 EWGYR 409 (409)
Q Consensus 405 E~gys 409 (409)
|||||
T Consensus 318 E~gys 322 (336)
T PRK13535 318 EWGFA 322 (336)
T ss_pred chHHH
Confidence 99996
No 12
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.6e-107 Score=815.39 Aligned_cols=319 Identities=46% Similarity=0.774 Sum_probs=307.9
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC-CCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEe
Q 015291 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (409)
Q Consensus 85 m~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd-~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~ 163 (409)
|++||||||||||||.++|++.++ ++++|++||| ..++++++|||||||+||+|+++++. +|+.|.|||++|++++
T Consensus 1 m~ikigInG~GRiGr~v~r~~~~~--~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~-~g~~l~~~g~~i~v~~ 77 (334)
T PRK08955 1 MTIKVGINGFGRIGRLALRAAWDW--PELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTA-EGDAIVINGKRIRTTQ 77 (334)
T ss_pred CCeEEEEECcCHHHHHHHHHHHhC--CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEE-cCCEEEECCEEEEEEe
Confidence 568999999999999999998876 4599999999 57999999999999999999999987 5889999999999999
Q ss_pred cCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEecCCccccCcCCCcEEecCCcchh
Q 015291 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTN 243 (409)
Q Consensus 164 ~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~~~dvP~vV~gVN~~~~~~~~~~IISnaSCTTn 243 (409)
+++|+++||+ |+|+||||||.|.+++++++|+++|||||++|+|++++|+||||||||++.|++..++||||||||||
T Consensus 78 ~~~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn 155 (334)
T PRK08955 78 NKAIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTN 155 (334)
T ss_pred cCChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHH
Confidence 9999999998 99999999999999999999999999999999998887889999999999998633789999999999
Q ss_pred hhHHHHHHHHhhcCccEEEeeeeeccccccccccccchhhhhhhccccceecCCCchHHHHHHHccccCCCeeEEEEecC
Q 015291 244 CLAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVP 323 (409)
Q Consensus 244 ~Lapvlk~L~~~fGI~~~~mTTiha~Tg~Q~llD~~~~d~r~~Raaa~NIIP~~tGaakav~kVlPeL~gkl~g~avRVP 323 (409)
||+|++|+||++|||++++|||||+||++|+++|++|+|+||+|++++||||++||++++++||||+|+||++++|+|||
T Consensus 156 ~Lap~lk~L~~~fgI~~~~mTTvha~t~~q~lld~~~~d~r~~r~~a~NiIP~~tGaa~a~~kvlP~L~gkl~~~avRVP 235 (334)
T PRK08955 156 CLAPVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAPHKDLRRARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVP 235 (334)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEEeccCccccccCCCcccccchhheeccccccCCCccccceEccccCCcEEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCccccccCCCeEEecCCCCCcceeecCCCceeeCCCeEEEEEEeC
Q 015291 324 TPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYD 403 (409)
Q Consensus 324 v~~gs~vdltv~lek~~vs~eeI~~al~~aa~~~lkgil~~~e~p~VS~Df~~~~~S~i~d~~~t~~~~~~~vKl~~WyD 403 (409)
|++||++||+++++++ +++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++++|+++|||
T Consensus 236 v~~gs~~dl~v~~~~~-~s~eev~~~l~~a~~~~l~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyD 314 (334)
T PRK08955 236 LANASLTDCVFEVERD-TTVEEVNALLKEAAEGELKGILGYEERPLVSIDYKTDPRSSIVDALSTMVVNGTQVKLYAWYD 314 (334)
T ss_pred cCCeEEEEEEEEECCC-CCHHHHHHHHHHhcCCCcCceeccccCCcccceeCCCCchHheehhcCEEecCCEEEEEEEeC
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 015291 404 NEWGYR 409 (409)
Q Consensus 404 NE~gys 409 (409)
||||||
T Consensus 315 NE~gys 320 (334)
T PRK08955 315 NEWGYA 320 (334)
T ss_pred CchhHH
Confidence 999996
No 13
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=8.3e-107 Score=811.37 Aligned_cols=318 Identities=48% Similarity=0.821 Sum_probs=306.5
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC-CChhhhhhhhcccccccccCc-eEEEecCCeEEECCeEEEEEe
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKA-DVKIVDNETISVDGKLIKVVS 163 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~-~~~~~~a~Ll~yDS~~G~f~~-~v~~~~~~~l~v~gk~I~v~~ 163 (409)
++||||||||||||..+|.+.++ ++++||||||+ .++++++|||||||+||+|++ +++.++|+.|.++|++|.+++
T Consensus 5 ~lrVaI~G~GrIGr~~~r~~~~~--~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~ 82 (338)
T PLN02358 5 KIRIGINGFGRIGRLVARVVLQR--DDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 82 (338)
T ss_pred ceEEEEEeecHHHHHHHHHHhhC--CCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEE
Confidence 58999999999999999998865 56999999995 799999999999999999996 999756778999999999999
Q ss_pred cCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEecCCccccCcCCCcEEecCCcchh
Q 015291 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTN 243 (409)
Q Consensus 164 ~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~~~dvP~vV~gVN~~~~~~~~~~IISnaSCTTn 243 (409)
+++|+++||++.|+||||||||.|++++++++|+++|||||+||+|++ |+|+||||||++.|+.. ++||||||||||
T Consensus 83 ~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~--dvp~iV~gVN~~~~~~~-~~IISnasCTTn 159 (338)
T PLN02358 83 IRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK--DAPMFVVGVNEHEYKSD-LDIVSNASCTTN 159 (338)
T ss_pred cCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCC--CCCeEecCcCHHHhCCC-CCEEECCCchHH
Confidence 999999999999999999999999999999999999999999999975 57999999999999875 789999999999
Q ss_pred hhHHHHHHHHhhcCccEEEeeeeecccccccccccc-chhhhhhhccccceecCCCchHHHHHHHccccCCCeeEEEEec
Q 015291 244 CLAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRV 322 (409)
Q Consensus 244 ~Lapvlk~L~~~fGI~~~~mTTiha~Tg~Q~llD~~-~~d~r~~Raaa~NIIP~~tGaakav~kVlPeL~gkl~g~avRV 322 (409)
||+|++|+||++|||++++|||||+||++|+++|++ ++|+||+|++++||||++||++++++||||+|+||++|+|+||
T Consensus 160 ~Lap~lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~tGaaka~~kIlP~l~gkl~g~avRV 239 (338)
T PLN02358 160 CLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRV 239 (338)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCCcchhhhhhhccccCCCcEEEEEEEe
Confidence 999999999999999999999999999999999997 5999999999999999999999999999999999999999999
Q ss_pred CccceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCccccccCCCeEEecCCCCCcceeecCCCceeeCCCeEEEEEEe
Q 015291 323 PTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWY 402 (409)
Q Consensus 323 Pv~~gs~vdltv~lek~~vs~eeI~~al~~aa~~~lkgil~~~e~p~VS~Df~~~~~S~i~d~~~t~~~~~~~vKl~~Wy 402 (409)
||++||++||+++++++ +++||||++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++++|+++||
T Consensus 240 Pv~~gs~~dl~v~~~~~-~t~eev~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~vk~~~Wy 318 (338)
T PLN02358 240 PTVDVSVVDLTVRLEKA-ATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDKFVKLVSWY 318 (338)
T ss_pred eEcCeeEEEEEEEECCC-CCHHHHHHHHHHHhhccccCcccccCCceeeeecCCCCcceEEEcccCeEecCCEEEEEEEe
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 015291 403 DNEWGYR 409 (409)
Q Consensus 403 DNE~gys 409 (409)
|||||||
T Consensus 319 DNE~gys 325 (338)
T PLN02358 319 DNEWGYS 325 (338)
T ss_pred cCchhHH
Confidence 9999996
No 14
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-106 Score=807.97 Aligned_cols=316 Identities=26% Similarity=0.464 Sum_probs=300.8
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC-CChhhhhhhhcccccccccC-ceEEEecCCeEEECC-eEEEE
Q 015291 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFK-ADVKIVDNETISVDG-KLIKV 161 (409)
Q Consensus 85 m~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~-~~~~~~a~Ll~yDS~~G~f~-~~v~~~~~~~l~v~g-k~I~v 161 (409)
|++||||||||||||+++|++.++ ++++||||||+ +++++++|||+|||+||+|+ .++++ +++.|.+|| ++|.+
T Consensus 1 m~~kv~INGfGRIGR~v~R~~~~~--~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~-~~~~l~i~g~~~i~~ 77 (342)
T PTZ00353 1 LPITVGINGFGPVGKAVLFASLTD--PLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRV-VGEQIVLNGTQKIRV 77 (342)
T ss_pred CCeEEEEECCChHHHHHHHHHHhc--CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEE-cCCEEecCCCeEEEE
Confidence 568999999999999999998876 46999999994 79999999999999999996 69997 578899999 89999
Q ss_pred EecCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEecCCccccCcCCCcEEecCCcc
Q 015291 162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCT 241 (409)
Q Consensus 162 ~~~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~~~dvP~vV~gVN~~~~~~~~~~IISnaSCT 241 (409)
+++++|+++||+++|+|+||||||.|.+++.+..|+++|||||||++|++ |+||||||||++.|++. ++||||||||
T Consensus 78 ~~~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~--d~p~vV~gVN~~~~~~~-~~IISnaSCT 154 (342)
T PTZ00353 78 SAKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSA--DAPTVMAGSNDERLSAS-LPVCCAGAPI 154 (342)
T ss_pred EecCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCC--CCCeEEecCChHHcCCC-CCEEECCCHH
Confidence 99999999999999999999999999999999999999999999999986 57999999999999876 7899999999
Q ss_pred hhhhHHHHHHHHhhcCccEEEeeeeecccccccccccc---chhhhhhhccccceecCCCchHHHHHHHccccCCCeeEE
Q 015291 242 TNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDAS---HRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGI 318 (409)
Q Consensus 242 Tn~Lapvlk~L~~~fGI~~~~mTTiha~Tg~Q~llD~~---~~d~r~~Raaa~NIIP~~tGaakav~kVlPeL~gkl~g~ 318 (409)
||||+|++|+||++|||++++|||||+|+ +|...|++ |+|+||+|++++||||++||++++++||||+|+||++|+
T Consensus 155 Tn~LapvlkvL~~~fGI~~g~mTTvHs~q-~~~~~d~~~~~~~d~rr~RaA~~nIiPtstgaakav~kVlP~L~gkl~g~ 233 (342)
T PTZ00353 155 AVALAPVIRALHEVYGVEECSYTAIHGMQ-PQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRISGS 233 (342)
T ss_pred HHHHHHHHHHHHHhcCeeEEEeeeeeecc-eeecCCCcccccccccccchHHhCCcccCCcchhhhhhhccccCCcEEEE
Confidence 99999999999999999999999999997 67777774 489999999999999999999999999999999999999
Q ss_pred EEecCccceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCccccccCCCeEEecCCCCCcceeecCCCceee-CCCeEE
Q 015291 319 ALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVM-GDDMVK 397 (409)
Q Consensus 319 avRVPv~~gs~vdltv~lek~~vs~eeI~~al~~aa~~~lkgil~~~e~p~VS~Df~~~~~S~i~d~~~t~~~-~~~~vK 397 (409)
|+||||++||++||+++++++ +++||||++|+++++++|||||+|+|+|+||+||+|++ |+|||+.+|+++ +++++|
T Consensus 234 avRVPt~~vs~vdltv~~~k~-~t~eein~~l~~aa~~~l~gil~~~~~~~VS~Df~~~~-~si~D~~~t~~~~~~~~vK 311 (342)
T PTZ00353 234 AFQVPVKKGCAIDMLVRTKQP-VSKEVVDSALAEAASDRLNGVLCISKRDMISVDCIPNG-KLCYDATSSSSSREGEVHK 311 (342)
T ss_pred EEEccccCeEEEEEEEEECCC-CCHHHHHHHHHHHhhcccCCeEEecCCCeeeeEeCCCC-CeEEEcccCeEEeCCCEEE
Confidence 999999999999999999999 99999999999999999999999999999999999999 599999999995 889999
Q ss_pred EEEEeCCCCCCC
Q 015291 398 VVAWYDNEWGYR 409 (409)
Q Consensus 398 l~~WyDNE~gys 409 (409)
+++|||||||||
T Consensus 312 v~~WYDNE~Gys 323 (342)
T PTZ00353 312 MVLWFDVECYYA 323 (342)
T ss_pred EEEEecCchHHH
Confidence 999999999996
No 15
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=5.1e-105 Score=816.58 Aligned_cols=320 Identities=40% Similarity=0.676 Sum_probs=306.1
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC--CCCceEEEEe----CCCChhhhhhhhcccccccccCceEEEec-CCeEEECCeE
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRK--DSPLDVVVVN----DSGGVKNASHLLKYDSLLGTFKADVKIVD-NETISVDGKL 158 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~--~~~~~vVaIn----d~~~~~~~a~Ll~yDS~~G~f~~~v~~~~-~~~l~v~gk~ 158 (409)
+.||||||||||||+++|++.++. .++++||||| |..+++++||||+|||+||+|++++++++ ++.|.+||+.
T Consensus 127 ~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~liing~~ 206 (477)
T PRK08289 127 PRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFNGTITVDEENNAIIANGNY 206 (477)
T ss_pred CceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCCCceEeecCCCEEEECCEE
Confidence 679999999999999999998762 1469999995 57899999999999999999999999742 6889999999
Q ss_pred EEEEecCCCCCCCccccCcc--EEEeCCCCCCChhhHHHHHH-cCCCEEEEeCCCCCCCCCeEEecCCccccCcCCCcEE
Q 015291 159 IKVVSNRDPLQLPWAELGID--IVIEGTGVFVDGPGAGKHIQ-AGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIV 235 (409)
Q Consensus 159 I~v~~~~~p~~l~W~~~gvD--iVle~TG~f~s~e~a~~hl~-aGakkVVISaps~~~dvP~vV~gVN~~~~~~~~~~II 235 (409)
|+++++++|+++||+++|+| +||||||.|.+++.+++||+ +||||||||||+++ ++|+||||||++.|++. ++||
T Consensus 207 I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~-d~p~iV~GVN~~~~~~~-~~II 284 (477)
T PRK08289 207 IQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKG-DIKNIVHGVNHSDITDE-DKIV 284 (477)
T ss_pred EEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCC-CCCeEEcccCHHHhCCC-CCEE
Confidence 99999999999999999999 99999999999999999999 89999999999987 68999999999999865 7899
Q ss_pred ecCCcchhhhHHHHHHHHhhcCccEEEeeeeeccccccccccccchhhhhhhccccceecCCCchHHHHHHHccccCCCe
Q 015291 236 SNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKL 315 (409)
Q Consensus 236 SnaSCTTn~Lapvlk~L~~~fGI~~~~mTTiha~Tg~Q~llD~~~~d~r~~Raaa~NIIP~~tGaakav~kVlPeL~gkl 315 (409)
||||||||||+|++|+||++|||++++|||||+||++|+++|++|+|+||+|++++||||++||++|+++||||+|+||+
T Consensus 285 SnASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ~lvD~~hkd~RrgRaaa~NIIptsTGAAkAv~kVLP~L~GKl 364 (477)
T PRK08289 285 SAASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQNLIDNYHKGDRRGRSAPLNMVITETGAAKAVAKALPELAGKL 364 (477)
T ss_pred ECCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCChHHhhhhhhcCcccceeeeeeEecCCChhhhhhhcccccCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCccceeEEEEEEEEccCCCCHHHHHHHHHHcc-cCCCCccccccCC-CeEEecCCCCCcceeecCCCceeeCC
Q 015291 316 NGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAA-EGPLKGILAVCDV-PLVSVDFRCSDVSSTIDSSLTMVMGD 393 (409)
Q Consensus 316 ~g~avRVPv~~gs~vdltv~lek~~vs~eeI~~al~~aa-~~~lkgil~~~e~-p~VS~Df~~~~~S~i~d~~~t~~~~~ 393 (409)
+|+|+||||++||++||+++++++ +++||||++|++++ +++|+|||+|+++ |+||+||+|++||+|||+.+|+++ +
T Consensus 365 tg~avRVPt~nvS~vdLtv~l~k~-vt~eevn~~lk~aa~~~~L~gil~yt~~~~lVSsDfig~~~SsI~D~~~T~v~-g 442 (477)
T PRK08289 365 TGNAIRVPTPNVSMAILNLNLEKE-TSREELNEYLRQMSLHSPLQNQIDYTDSTEVVSSDFVGSRHAGVVDSQATIVN-G 442 (477)
T ss_pred EEEEEEeccccEEEEEEEEEECCC-CCHHHHHHHHHHHhhcCCccceeeecccCCeeeeeecCCCchhheehhccEEc-C
Confidence 999999999999999999999999 99999999999999 4899999999999 799999999999999999999998 6
Q ss_pred CeEEEEEEeCCCCCCC
Q 015291 394 DMVKVVAWYDNEWGYR 409 (409)
Q Consensus 394 ~~vKl~~WyDNE~gys 409 (409)
+++||++|||||||||
T Consensus 443 ~~vkv~~WYDNE~GYS 458 (477)
T PRK08289 443 NRAVLYVWYDNEFGYS 458 (477)
T ss_pred CEEEEEEEecCchhHH
Confidence 8999999999999997
No 16
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=1.6e-104 Score=792.07 Aligned_cols=318 Identities=43% Similarity=0.794 Sum_probs=306.5
Q ss_pred eEEEEcCChhHHHHHHHHHhCC-CCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~-~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~ 166 (409)
||||||||||||.++|+|.+++ .++|+|++|||+.+.++++|||+|||+||+|+++++. +|+.|.|+|+.|.++++++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~-~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKV-DGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEE-eCCEEEECCeEEEEEEcCC
Confidence 6999999999999999999874 3569999999999999999999999999999999997 5889999999999999999
Q ss_pred CCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCC-CCCCCeEEecCCccccCcCCCcEEecCCcchhhh
Q 015291 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK-GADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (409)
Q Consensus 167 p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~-~~dvP~vV~gVN~~~~~~~~~~IISnaSCTTn~L 245 (409)
|+++||++.|+|+||||||.|.+++++++|+++||++|++|+|.+ +++ +|||||||++.|++. ++||||||||||||
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~-~~vV~gVN~~~~~~~-~~IISnasCtTn~l 157 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLD-ATIVYGVNQQDLSAE-HTIVSNASCTTNCI 157 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCC-ceEEeccCHHHhCCC-CCEEeCCCcHHHHH
Confidence 999999999999999999999999999999999999999999965 434 499999999999875 88999999999999
Q ss_pred HHHHHHHHhhcCccEEEeeeeeccccccccccccchhhhhhhccccceecCCCchHHHHHHHccccCCCeeEEEEecCcc
Q 015291 246 APFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTP 325 (409)
Q Consensus 246 apvlk~L~~~fGI~~~~mTTiha~Tg~Q~llD~~~~d~r~~Raaa~NIIP~~tGaakav~kVlPeL~gkl~g~avRVPv~ 325 (409)
+|++|+||++|||+++.|||||+||++|+++|++|+|+|++|.+++||||++||++++++||||+|+||++++||||||+
T Consensus 158 ap~lk~L~~~fgI~~~~~tTvha~t~~q~~vD~~~~d~r~~r~a~~NiIP~~t~~a~a~~kilP~L~gkl~~~avRVPv~ 237 (325)
T TIGR01532 158 VPLIKLLDDAIGIESGTITTIHSAMNDQQVIDAYHHDLRRTRAASQSIIPVDTKLARGIERLFPEFAGRFEAIAVRVPTV 237 (325)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEhhcCCccccccchhhccccchHhhCeeeCCccHHHHHHHhCcccCCeEEEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCccccccCCCeEEecCCCCCcceeecCCCceeeCCCeEEEEEEeCCC
Q 015291 326 NVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNE 405 (409)
Q Consensus 326 ~gs~vdltv~lek~~vs~eeI~~al~~aa~~~lkgil~~~e~p~VS~Df~~~~~S~i~d~~~t~~~~~~~vKl~~WyDNE 405 (409)
+||++||+++++++ +++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++|+||++|||||
T Consensus 238 ~~s~~dl~v~~~~~-~~~eev~~~l~~a~~~~l~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE 316 (325)
T TIGR01532 238 NVTALDLSVTTKRD-VKANEVNRVLREAAQGPLRGIVDYTELPLVSCDFNHDPHSAIVDGTQTRVSGPRLVKLLVWCDNE 316 (325)
T ss_pred CcEEEEEEEEECCC-CCHHHHHHHHHHhhccccccccccccCCccccccCCCCcceEEEcccCEEecCCEEEEEEEeCCc
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 015291 406 WGYR 409 (409)
Q Consensus 406 ~gys 409 (409)
||||
T Consensus 317 ~gys 320 (325)
T TIGR01532 317 WGFA 320 (325)
T ss_pred ceee
Confidence 9997
No 17
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-77 Score=575.16 Aligned_cols=270 Identities=49% Similarity=0.833 Sum_probs=255.6
Q ss_pred hHHHHHHHHHhCCCCCceEEEEeCC-CChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCCCCCCCcccc
Q 015291 97 IGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAEL 175 (409)
Q Consensus 97 IGr~vlr~l~~~~~~~~~vVaInd~-~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~p~~l~W~~~ 175 (409)
|||.++ + +. +++||+|||+ .+.++++|+++|||+||+|+++++. ++..+.++|+.|.++++++|..++|.+.
T Consensus 1 ig~~~~---~-~~--~v~vv~indpfi~~~~~~y~~kydsthG~f~g~~k~-~~~~~i~~G~~i~~~~~~~p~~i~w~~~ 73 (285)
T KOG0657|consen 1 IGRLVL---Q-RN--SVDVVAINDPFIDLNYLAYMLKYDSTHGKFHGTVKA-ENFKLIINGNPITIFQFRDPAKIPWGAK 73 (285)
T ss_pred CCcccc---c-cC--CcccccccCcccccccccccccccccCCccccceee-cCCceeecCceEEeecccCcccCccccc
Confidence 577776 2 43 3999999997 6999999999999999999999998 4677888999999999999999999999
Q ss_pred CccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEecCCccccCcCCCcEEecCCcchhhhHHHHHHHHhh
Q 015291 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEE 255 (409)
Q Consensus 176 gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~~~dvP~vV~gVN~~~~~~~~~~IISnaSCTTn~Lapvlk~L~~~ 255 (409)
++|+|+|+||.|.+.+.+..|+++||||||||+|+. |.|++|+|||+++|+++ ..||||+|||||||+|+.|+|||+
T Consensus 74 g~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~--dapmfv~gVn~~~y~~~-~~iiSnascttnclaPlaKVi~d~ 150 (285)
T KOG0657|consen 74 GADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSA--DAPMFVMGVNGEKYDNS-LDIISNASCTTNCLAPLAKVIHDN 150 (285)
T ss_pred cceeEeeccccccccccccccccccceEEEeccccC--CCCcccccccccccccc-cceeechhhhhccccchhheeccc
Confidence 999999999999999999999999999999999998 58999999999999886 559999999999999999999999
Q ss_pred cCccEEEeeeeeccccccccccccc-hhhhhhhccccceecCCCchHHHHHHHccccCCCeeEEEEecCccceeEEEEEE
Q 015291 256 LGIVKGAMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTPNVSVVDLVV 334 (409)
Q Consensus 256 fGI~~~~mTTiha~Tg~Q~llD~~~-~d~r~~Raaa~NIIP~~tGaakav~kVlPeL~gkl~g~avRVPv~~gs~vdltv 334 (409)
|||.+++|||+|++|++|+++|+++ ++||.+|.+.|||||.+||++|+++|+||||+||++||++||||+ ++++||++
T Consensus 151 fgI~EgLMtTvha~tatQktvdgps~k~wr~g~~a~qNIiPASTgAakAVgKvipeLngKLtGMAf~Vpt~-vsVvdl~~ 229 (285)
T KOG0657|consen 151 FGIMEGLMTTVHAITATQKTVDGPSGKLWRDGRRALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTP-VSVVDLTC 229 (285)
T ss_pred cccccccccceeeeccccccccCcccccccccchhhhccccccccHHHHHHHHhHHhhCccccceecCCcc-eEeeeeec
Confidence 9999999999999999999999986 699999999999999999999999999999999999999999999 99999999
Q ss_pred EEccCCCCHHHHHHHHHHcccCCCCccccccCCCeEEecCCCCCcceeecCCCceeeCCCeEEEEEEeCCCCCCC
Q 015291 335 NVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYR 409 (409)
Q Consensus 335 ~lek~~vs~eeI~~al~~aa~~~lkgil~~~e~p~VS~Df~~~~~S~i~d~~~t~~~~~~~vKl~~WyDNE~gys 409 (409)
+++++ .++|+|+++++++++++||||| ||+ +| ++|||||||||
T Consensus 230 ~~~k~-a~~ddikkvvk~~~~~~lkGIL--te~--------------------------~f---ISWYDNE~GYS 272 (285)
T KOG0657|consen 230 HLEKP-AKYDDIKKVVKLASEIPLKGIL--TEH--------------------------HF---ISWYDNEFGYS 272 (285)
T ss_pred ccccc-cchHHHHHHHHHhhcccccccc--ccc--------------------------ce---eeeeccccccc
Confidence 99999 9999999999999999999999 877 34 89999999997
No 18
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=9e-55 Score=434.89 Aligned_cols=236 Identities=20% Similarity=0.267 Sum_probs=207.1
Q ss_pred EEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChh---hhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecC
Q 015291 89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVK---NASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (409)
Q Consensus 89 VaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~---~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~ 165 (409)
|||||||||||.++|++.++ ++++|||||| .+++ +++|+++||+.|+.+...++. +++.|.++|+
T Consensus 1 VaInG~GrIGr~varav~~~--~d~elVaVnD-~~~~~~a~lA~~lgyds~~~~~~~~~~~-~~~~l~v~g~-------- 68 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ--DDMKLVGVTK-TSPDFEAYRAKELGIPVYAASEEFIPRF-EEAGIEVAGT-------- 68 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC--CCcEEEEEec-CChHHHHHHHHHhCCCEEeecCCcceEe-ccCceEecCC--------
Confidence 69999999999999998875 5699999999 5777 788888999999544445665 3555666654
Q ss_pred CCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEecCCccccCcCCCcEEecCCcchhhh
Q 015291 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (409)
Q Consensus 166 ~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~~~dvP~vV~gVN~~~~~~~~~~IISnaSCTTn~L 245 (409)
++++. .++|+|+||||.|..++.++.|+++|+|+|++++|+++...++||+|+|++.|... + ||||+|||||||
T Consensus 69 -~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~-~-~vs~aSCtTn~L 142 (333)
T TIGR01546 69 -LEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGK-D-YVRVVSCNTTGL 142 (333)
T ss_pred -HHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcC-c-eEEecCchHhhH
Confidence 44443 27999999999999999999999999999999999875324799999999999764 4 999999999999
Q ss_pred HHHHHHHHhhcCccEEEeeeeeccccccccccccchhhhhhhccccceecC-CC---chHHHHHHHccccCCCeeEEEEe
Q 015291 246 APFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPT-ST---GAAKAVSLVMPQLKGKLNGIALR 321 (409)
Q Consensus 246 apvlk~L~~~fGI~~~~mTTiha~Tg~Q~llD~~~~d~r~~Raaa~NIIP~-~t---Gaakav~kVlPeL~gkl~g~avR 321 (409)
+|++|+|+++|||+++.|||+|+ |+||+ |+||+| ++||||+ +| +.++++++|||+|+ ++|+++|
T Consensus 143 ap~~~~L~~~fGI~~~~~Ttvh~-t~dq~-------d~rrgr--~~~IiP~~~t~ps~~a~av~~VlP~L~--i~g~Avr 210 (333)
T TIGR01546 143 VRTLNAINDYSKVDKVRAVMVRR-AADPN-------DVKKGP--INAIVPDPVTVPSHHGPDVQTVIPNLN--IETMAFV 210 (333)
T ss_pred HHHHHHHHHhcCeEEEEEEEEee-cCChh-------hhccCc--hhceEeCCCCCCCchHHHHHHcCCCCC--ccEEEEE
Confidence 99999999999999999999997 99994 889999 6999999 44 66899999999997 9999999
Q ss_pred cCccceeEEEEEEEEccCCCCHHHHHHHHHHccc
Q 015291 322 VPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAE 355 (409)
Q Consensus 322 VPv~~gs~vdltv~lek~~vs~eeI~~al~~aa~ 355 (409)
|||+++|++||+++++++ +++||||++|+++++
T Consensus 211 VPt~~vs~~dl~v~l~~~-~t~eeV~~~l~~~~r 243 (333)
T TIGR01546 211 VPTTLMHVHSIMVELKKP-VTKDDIIDILENTPR 243 (333)
T ss_pred eCCCCcEEEEEEEEECCC-CCHHHHHHHHHhCCc
Confidence 999999999999999999 999999999999874
No 19
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=100.00 E-value=2.5e-51 Score=371.40 Aligned_cols=157 Identities=57% Similarity=0.903 Sum_probs=153.0
Q ss_pred hHHHHHHHHhhcCccEEEeeeeeccccccccccccchhhhhhhccccceecCCCchHHHHHHHccccCCCeeEEEEecCc
Q 015291 245 LAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPT 324 (409)
Q Consensus 245 Lapvlk~L~~~fGI~~~~mTTiha~Tg~Q~llD~~~~d~r~~Raaa~NIIP~~tGaakav~kVlPeL~gkl~g~avRVPv 324 (409)
|+|++|+||++|||++++|||+|+||++|+++|++|+|+||+|++++||||++||+++++++|||+|+|||+|+++||||
T Consensus 1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q~~~D~~~~d~rrgr~a~~niip~~t~aa~av~~VlP~L~gki~g~a~rVPt 80 (157)
T PF02800_consen 1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQKLVDGPHKDWRRGRAAAQNIIPTSTGAAKAVGKVLPELNGKITGMAVRVPT 80 (157)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEESSTTSBSSSS--SSTGTTSBTTTSSEEEEESHHHHHHHHSGGGTTTEEEEEEEESS
T ss_pred CcchhhhhhhhcCEEEEEEEEEeccCCccceeeeccccccccccccccccccccccchhhhhhhhhccCcceeeEEeeee
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCccccccCCCeEEecCCCCCcceeecCCCceeeCCCeEEEEEEe
Q 015291 325 PNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWY 402 (409)
Q Consensus 325 ~~gs~vdltv~lek~~vs~eeI~~al~~aa~~~lkgil~~~e~p~VS~Df~~~~~S~i~d~~~t~~~~~~~vKl~~Wy 402 (409)
+++|++||+++++++ +++|||+++|+++++++++||++|+|+|+||+||+|++||+|||..+|++++++++|+++||
T Consensus 81 ~~~s~~dl~~~l~k~-~t~eeV~~~~~~aa~~~~~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~v~~~~~vkl~~WY 157 (157)
T PF02800_consen 81 PNVSLHDLTVELEKP-VTKEEVNEALKQAARGPLKGILGYTEDPLVSSDFNGDRHSSIFDAEATIVVNGNLVKLFAWY 157 (157)
T ss_dssp SSEEEEEEEEEESSS-S-HHHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGEEEEETTEEEEEEEE
T ss_pred cccCceEEEEecccc-hhhhhhhhhhhhhhHhhhhhhheecccceEEeccCCCceEEEEEhHHCeEECCCEEEEEEEC
Confidence 999999999999999 99999999999999999999999999999999999999999999999999999999999999
No 20
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=5.2e-47 Score=381.09 Aligned_cols=260 Identities=21% Similarity=0.258 Sum_probs=204.8
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhc---ccccccccCceEEEecCCeEEECCeEEEEE
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK---YDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~---yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~ 162 (409)
++||||||||||||.+++++.++ ++++|++|+|. ++++.+||++ || .||.++...+. +++..+.+.
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~--~d~eLvav~d~-~~~~~~~la~~~G~~-~~~~~~~~~~~-------~~~~~i~V~ 69 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ--PDMELVGVAKT-KPDYEARVAVEKGYP-LYVADPEREKA-------FEEAGIPVA 69 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC--CCcEEEEEECC-ChHHHHHHHHhcCCC-ccccCcccccc-------ccCCceEEc
Confidence 37999999999999999999875 56999999996 5788999987 44 55665544330 222333442
Q ss_pred ecCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCC--CeEEecCCccccCcCCCcEEecCCc
Q 015291 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADI--PTYVVGVNEKDYDHEVANIVSNASC 240 (409)
Q Consensus 163 ~~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~~~dv--P~vV~gVN~~~~~~~~~~IISnaSC 240 (409)
.+++++. .++|+||||||.+.+++.++.|+++| ++||+++|.++ ++ .+||||||++.|... ++|+||||
T Consensus 70 --~~~~el~---~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~-~~~~~~~v~~vN~~~~~~~--~~v~~~sC 140 (341)
T PRK04207 70 --GTIEDLL---EKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKA-EVAGVSFNALANYEEALGK--DYVRVVSC 140 (341)
T ss_pred --CChhHhh---ccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCC-CCCCCcEEeeECHHHhCCC--CcEEccCh
Confidence 2233332 27999999999999999999999999 67899988643 32 247999999998653 48999999
Q ss_pred chhhhHHHHHHHHhhcCccEEEeeeeeccccccccccccchhhhhhhccccceecCC----CchHHHHHHHccccCCCee
Q 015291 241 TTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTS----TGAAKAVSLVMPQLKGKLN 316 (409)
Q Consensus 241 TTn~Lapvlk~L~~~fGI~~~~mTTiha~Tg~Q~llD~~~~d~r~~Raaa~NIIP~~----tGaakav~kVlPeL~gkl~ 316 (409)
|||||+|+||+||++|||+++.|||||++|+ + +++| |++++||+|.. +...+++++|+|+|+ ++
T Consensus 141 tT~~l~~~l~~L~~~fgI~~~~vTtv~a~td-------~-~~~~--r~~~~niip~p~~~~~~~g~~v~~vlp~l~--i~ 208 (341)
T PRK04207 141 NTTGLCRTLCALDRAFGVKKVRATLVRRAAD-------P-KEVK--RGPINAIVPDPVTVPSHHGPDVKTVLPDLD--IT 208 (341)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEEEEEcCCC-------c-chhh--HHHhcCcCCCCCCCCCCchhHHHhhCCCCc--eE
Confidence 9999999999999999999999999999984 2 3553 78999999752 233489999999996 99
Q ss_pred EEEEecCccceeEEEEEEEEccCCCCHHHHHHHHHHcccC----CCCccccccCCCeEEecCCCCCc
Q 015291 317 GIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEG----PLKGILAVCDVPLVSVDFRCSDV 379 (409)
Q Consensus 317 g~avRVPv~~gs~vdltv~lek~~vs~eeI~~al~~aa~~----~lkgil~~~e~p~VS~Df~~~~~ 379 (409)
++|+||||++||+++|+++|+++ +++|||+++|++++.= .-.|+.+ +.+++...+=.|.|+
T Consensus 209 ~~avrVPv~~gh~~~v~v~l~~~-~t~eev~~~l~~~~~i~~~~~~~~~~s-~~~~~~~~~~~~rp~ 273 (341)
T PRK04207 209 TMAVKVPTTLMHMHSVNVELKKP-VTKEEVLEALENTPRILLVRASDGIDS-TAELIEYARDLGRPR 273 (341)
T ss_pred EEEEEcCCCCceEEEEEEEECCC-CCHHHHHHHHHhCCCCEeeccccCCCC-hHHHhHHHHHcCCCc
Confidence 99999999999999999999999 9999999999998742 2245655 555554433344443
No 21
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=100.00 E-value=1.2e-47 Score=345.44 Aligned_cols=150 Identities=52% Similarity=0.864 Sum_probs=138.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCC-ChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~-~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~ 165 (409)
|||||||||||||+++|++..+ ++|+||+|||+. ++++++|||+|||+||+|+++++. +++.|.++|+.|++++++
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~--~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~-~~~~l~v~G~~I~~~~~~ 77 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQ--PDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEV-DDDGLIVNGKKIKVTEER 77 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTS--TTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEE-ETTEEEETTEEEEEEHTS
T ss_pred CEEEEECCCcccHHHHHhhccc--ceEEEEEEecccccchhhhhhhhccccccceeccccc-ccceeEeecccccchhhh
Confidence 6999999999999999999965 569999999997 999999999999999999999997 478899999999999999
Q ss_pred CCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEecCCccccCcCCCcEEecCCc
Q 015291 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASC 240 (409)
Q Consensus 166 ~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~~~dvP~vV~gVN~~~~~~~~~~IISnaSC 240 (409)
+|+++||+++|||+|+||||.|.+++.++.|+++||||||+|+|++++.+||||+|||++.|+++ ++||||+||
T Consensus 78 dp~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~-~~iIS~aSC 151 (151)
T PF00044_consen 78 DPEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPE-HHIISNASC 151 (151)
T ss_dssp SGGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTT-TSEEEE--H
T ss_pred hhcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCC-CCEEEccCC
Confidence 99999999999999999999999999999999999999999999987548999999999999987 599999999
No 22
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=2.3e-43 Score=349.48 Aligned_cols=234 Identities=16% Similarity=0.209 Sum_probs=196.6
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCce-EEEecCCeEEECCeEEEEEe
Q 015291 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKAD-VKIVDNETISVDGKLIKVVS 163 (409)
Q Consensus 86 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~-v~~~~~~~l~v~gk~I~v~~ 163 (409)
.++||| | +|.+||.++++|++|++ + +.++ +||. | . .+ .|+.|.|+|+++.|
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~f---p---v~~l-------~l~~--s-------~~~s--~gk~i~f~g~~~~V-- 55 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDL---E---IEQI-------SIVE--I-------EPFG--EEQGIRFNNKAVEQ-- 55 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCC---c---hhhe-------eecc--c-------cccc--CCCEEEECCEEEEE--
Confidence 479999 9 99999999999999874 5 2332 4553 2 1 12 47899999999999
Q ss_pred cCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCCeEEecCCccccCc-CCCcEEecCC
Q 015291 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDH-EVANIVSNAS 239 (409)
Q Consensus 164 ~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps---~~~dvP~vV~gVN~~~~~~-~~~~IISnaS 239 (409)
+++++.+|+ ++|+||+ +|...++++++...++|| +||++++ +++|+|++|||||++.+.. .+++||+|||
T Consensus 56 -~~l~~~~f~--~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanPN 129 (322)
T PRK06901 56 -IAPEEVEWA--DFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLPD 129 (322)
T ss_pred -EECCccCcc--cCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECCc
Confidence 456666786 8999999 999999999999999999 9998774 8999999999999998875 2257999999
Q ss_pred cchhhhHHHHHHHHhhcCccEEEeeeeecccccc-ccccccc---------hh-hhhhhccccceecCC-CchHHHHHHH
Q 015291 240 CTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQ-RLLDASH---------RD-LRRARAAALNIVPTS-TGAAKAVSLV 307 (409)
Q Consensus 240 CTTn~Lapvlk~L~~~fGI~~~~mTTiha~Tg~Q-~llD~~~---------~d-~r~~Raaa~NIIP~~-tGaakav~kV 307 (409)
|||.+|++.|+|||+.|||+++.+||||++||.. +.+|... ++ ....+++|||+||+. .|-..|.+||
T Consensus 130 CsTi~l~~aL~pL~~~~~l~rv~VsTyQavSGaG~~gv~eL~~qt~~~~n~~~~~~~~~~iAFNviP~ig~~m~~EtrKI 209 (322)
T PRK06901 130 PQVSQLALALAPFLQEQPLSQIFVTSLLPASYTDAETVKKLAGQTARLLNGIPLDEEEQRLAFDVFPANAQNLELQLQKI 209 (322)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeecchhhcCHhHHHHHHHHHHHHhCCCCCCCCceeeeccccccCCccHHHHHHHH
Confidence 9999999999999999999999999999999973 2222211 00 112489999999998 5677899999
Q ss_pred ccccCCCeeEEEEecCccceeEEEEEEEEccCCCCHHHHHHHHHHcc
Q 015291 308 MPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAA 354 (409)
Q Consensus 308 lPeL~gkl~g~avRVPv~~gs~vdltv~lek~~vs~eeI~~al~~aa 354 (409)
||+| .++++||+||||++||++.++++++++ ++.|+++++|++++
T Consensus 210 l~~l-~~VsaTcVRVPV~~GHs~sV~ve~e~~-~~~e~~~~~l~~~~ 254 (322)
T PRK06901 210 FPQL-ENVTFHSIQVPVFYGLAQMVTALSEYE-LDIESQLAEWQQNN 254 (322)
T ss_pred hCCc-ccEEEEEEEcceeccEEEEEEEEECCC-CCHHHHHHHHHhCC
Confidence 9888 269999999999999999999999999 99999999999876
No 23
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=100.00 E-value=1.6e-42 Score=311.48 Aligned_cols=149 Identities=54% Similarity=0.877 Sum_probs=139.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~ 166 (409)
+||||||||||||.++|++.++ +++++++|+|+.++++++|||+|||+||+|+.+++. +++.|.+||+.|.++++++
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~--~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~-~~~~l~i~g~~i~~~~~~~ 77 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLER--PDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEV-DEDGLIVNGKKIKVLAERD 77 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEE-eCCEEEECCEEEEEEecCC
Confidence 5899999999999999998865 569999999988999999999999999999999987 4778999999999999999
Q ss_pred CCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEecCCccccCcCCCcEEecCCc
Q 015291 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASC 240 (409)
Q Consensus 167 p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~~~dvP~vV~gVN~~~~~~~~~~IISnaSC 240 (409)
|.++||+++|+|+|+||||.|.+++.++.|+++||||||||+|+++ +.++||+|||++.|+++ ++||||+||
T Consensus 78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~-~~~t~V~GvN~~~~~~~-~~iiS~aSC 149 (149)
T smart00846 78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKD-ADKTFVYGVNHDEYDPE-DHIVSNASC 149 (149)
T ss_pred hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCC-CCceEEEeechHHcCCC-CCEEEcCCC
Confidence 9999999999999999999999999999999999999999999876 44699999999999876 679999999
No 24
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=5.4e-40 Score=329.11 Aligned_cols=233 Identities=24% Similarity=0.389 Sum_probs=196.5
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~ 165 (409)
+||+|.| +|.+|+.++|+|.++..|.++++++... . + .++.+.++|+.+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~-------------~---------~--~g~~l~~~g~~i~v~--- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASA-------------R---------S--AGKELSFKGKELKVE--- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEcc-------------c---------c--CCCeeeeCCceeEEe---
Confidence 6999999 9999999999999876677887776421 0 0 244555667666663
Q ss_pred CCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEecCCccccCcC-CCcEEecCCcc
Q 015291 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDHE-VANIVSNASCT 241 (409)
Q Consensus 166 ~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISap---s~~~dvP~vV~gVN~~~~~~~-~~~IISnaSCT 241 (409)
++...+|. ++|+||+|+|.+.+++++++|+++|+ +||+.+ ++++++|+++||||++.++.. +++|||||+|+
T Consensus 55 d~~~~~~~--~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~C~ 130 (334)
T PRK14874 55 DLTTFDFS--GVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPNCS 130 (334)
T ss_pred eCCHHHHc--CCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECccHH
Confidence 45555785 89999999999999999999999999 788543 455578999999999998753 24799999999
Q ss_pred hhhhHHHHHHHHhhcCccEEEeeeeecccc------------cccccccc---chhhhhhhccccceecCC-----CchH
Q 015291 242 TNCLAPFVKVMDEELGIVKGAMTTTHSYTG------------DQRLLDAS---HRDLRRARAAALNIVPTS-----TGAA 301 (409)
Q Consensus 242 Tn~Lapvlk~L~~~fGI~~~~mTTiha~Tg------------~Q~llD~~---~~d~r~~Raaa~NIIP~~-----tGaa 301 (409)
|+|++|.|+||+++|+|+++.|||+|++|| +|.++|++ ++++||+|++++||||+. +|.+
T Consensus 131 ~t~~~l~l~pL~~~~~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh~ 210 (334)
T PRK14874 131 TIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHIDVFMDDGYT 210 (334)
T ss_pred HHHHHHHHHHHHHhcCceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcccCcCCccccCCCc
Confidence 999999999999999999999999999997 56678755 468899999999999996 7777
Q ss_pred HH-------HHHHc--cccCCCeeEEEEecCccceeEEEEEEEEccCCCCHHHHHHHHHHc
Q 015291 302 KA-------VSLVM--PQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKA 353 (409)
Q Consensus 302 ka-------v~kVl--PeL~gkl~g~avRVPv~~gs~vdltv~lek~~vs~eeI~~al~~a 353 (409)
+| +.+++ |++ +++++++||||++||+.+++++++++ ++.+||+++|+++
T Consensus 211 ~eE~ki~~el~~il~~~~~--~v~~t~~rvPv~~G~~~ti~v~~~~~-~~~~~v~~~l~~~ 268 (334)
T PRK14874 211 KEEMKMVNETKKILGDPDL--KVSATCVRVPVFTGHSESVNIEFEEP-ISVEEAREILAEA 268 (334)
T ss_pred HHHHHHHHHHHHHhCCCCC--eEEEEEEEcceeccEEEEEEEEECCC-CCHHHHHHHHHcC
Confidence 66 46676 877 69999999999999999999999999 9999999999984
No 25
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=100.00 E-value=4.4e-40 Score=332.27 Aligned_cols=236 Identities=14% Similarity=0.166 Sum_probs=188.3
Q ss_pred eeEEEEc-CChhHHHHHHHHH-hCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEec
Q 015291 87 LKVAING-FGRIGRNFLRCWH-GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~-~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~ 164 (409)
+||||+| +|.|||.++++|+ ++.++..++ +++. | ..+ +|..+.++|+.+.|.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~-------------~~~s--s-------~~s--~g~~~~f~~~~~~v~-- 54 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRP-------------VFFS--T-------SQL--GQAAPSFGGTTGTLQ-- 54 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccE-------------EEEE--c-------hhh--CCCcCCCCCCcceEE--
Confidence 3899999 9999999999988 554322222 2331 2 111 467788888887773
Q ss_pred CCCCCC-CccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCCeEEecCCccccCcC-CCcE--Eec
Q 015291 165 RDPLQL-PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDHE-VANI--VSN 237 (409)
Q Consensus 165 ~~p~~l-~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps---~~~dvP~vV~gVN~~~~~~~-~~~I--ISn 237 (409)
+..++ .|. ++|+||+|+|...+++++++..++|+..+||++.+ +++|+|++||+||++.+... +++| |+|
T Consensus 55 -~~~~~~~~~--~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~ian 131 (366)
T TIGR01745 55 -DAFDIDALK--ALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTFVG 131 (366)
T ss_pred -cCccccccc--CCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeEEC
Confidence 34444 565 89999999999999999999999994448998764 89999999999999987642 2567 899
Q ss_pred CCcchhhhHHHHHHHHhhcCccEEEeeeeeccccccc------------cccc--------------------------c
Q 015291 238 ASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQR------------LLDA--------------------------S 279 (409)
Q Consensus 238 aSCTTn~Lapvlk~L~~~fGI~~~~mTTiha~Tg~Q~------------llD~--------------------------~ 279 (409)
|||||++|++.|+|||+.|||+++.+|||||+||+.+ ++++ +
T Consensus 132 PNCst~~l~~aL~pL~~~~~i~~v~VsTyQAvSGAG~~g~~eL~~Qt~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~ 211 (366)
T TIGR01745 132 GNCTVSLMLMSLGGLFANDLVEWVSVATYQAASGGGARHMRELLTQMGHLYGHVEDELATPSSAILDIERKVTKLTRSGE 211 (366)
T ss_pred cCHHHHHHHHHHHHHHhccCccEEEEEechhhhhcCHHHHHHHHHHHHHHhccccccccccchhhhhhccccccccccCC
Confidence 9999999999999999999999999999999999742 1120 0
Q ss_pred chhhhhhhccccceecCC-----CchHHHH-------HHHc---cccCCCeeEEEEecCccceeEEEEEEEEccCCCCHH
Q 015291 280 HRDLRRARAAALNIVPTS-----TGAAKAV-------SLVM---PQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAE 344 (409)
Q Consensus 280 ~~d~r~~Raaa~NIIP~~-----tGaakav-------~kVl---PeL~gkl~g~avRVPv~~gs~vdltv~lek~~vs~e 344 (409)
...-.+++++|+|+||+. +|+++++ +||| |+| ++++||+||||++||++.++++++++ ++.+
T Consensus 212 ~~~~~fp~~iafNvIP~Ig~~~~~g~t~EE~K~~~EtrKILg~~~~l--~VsaTcVRVPV~~gHs~sv~ve~~~~-vs~e 288 (366)
T TIGR01745 212 LPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILGTSSTI--PVDGLCVRIGALRCHSQAFTIKLKKD-VSLE 288 (366)
T ss_pred CCcccCCCcccccccCcCCCccCCCCcHHHHHHHHHHHHHhCCCCCC--cEEEEEEecceeccEEEEEEEEECCC-CCHH
Confidence 011246799999999996 5776655 4566 555 69999999999999999999999999 9999
Q ss_pred HHHHHHHHcc
Q 015291 345 DVNAAFRKAA 354 (409)
Q Consensus 345 eI~~al~~aa 354 (409)
+++++|+++.
T Consensus 289 ~i~~~L~~~~ 298 (366)
T TIGR01745 289 TIEEIIRAHN 298 (366)
T ss_pred HHHHHHHhCC
Confidence 9999999854
No 26
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=100.00 E-value=9.2e-40 Score=328.37 Aligned_cols=235 Identities=23% Similarity=0.342 Sum_probs=195.2
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~ 166 (409)
||+|+| +|.+|+.++|+|.++.+|.++++.+... .+ .|+.+.+.|+.+.+..
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~----------------------~~--~g~~~~~~~~~~~~~~--- 53 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASD----------------------RS--AGRKVTFKGKELEVNE--- 53 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecc----------------------cc--CCCeeeeCCeeEEEEe---
Confidence 689999 9999999999999876555665444211 01 3556667676555532
Q ss_pred CCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEecCCccccCcC-CCcEEecCCcch
Q 015291 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDHE-VANIVSNASCTT 242 (409)
Q Consensus 167 p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISap---s~~~dvP~vV~gVN~~~~~~~-~~~IISnaSCTT 242 (409)
.+...|. ++|+||+|+|.+.+++++++|+++|+ +||+.+ ++++++|++|||||++.++.. .++|||||+|+|
T Consensus 54 ~~~~~~~--~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C~~ 129 (339)
T TIGR01296 54 AKIESFE--GIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNCST 129 (339)
T ss_pred CChHHhc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCcHH
Confidence 2223453 89999999999999999999999999 688655 466578999999999998753 256999999999
Q ss_pred hhhHHHHHHHHhhcCccEEEeeeeeccccc------------cccccccchh--------hhhhhccccceecCC-----
Q 015291 243 NCLAPFVKVMDEELGIVKGAMTTTHSYTGD------------QRLLDASHRD--------LRRARAAALNIVPTS----- 297 (409)
Q Consensus 243 n~Lapvlk~L~~~fGI~~~~mTTiha~Tg~------------Q~llD~~~~d--------~r~~Raaa~NIIP~~----- 297 (409)
+|++++|+||+++|+|+++.|||+|++||+ |++++.++.+ .+|+|++++||||++
T Consensus 130 t~~~l~l~pL~~~~~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~NiIp~~~~~~~ 209 (339)
T TIGR01296 130 IQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQIAFNAIPHIDDFND 209 (339)
T ss_pred HHHHHHHHHHHHhcCccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcccccccCcCCCccc
Confidence 999999999999999999999999999996 5556665554 789999999999995
Q ss_pred CchHHHHHHHccccC-------CCeeEEEEecCccceeEEEEEEEEccCCCCHHHHHHHHHHcc
Q 015291 298 TGAAKAVSLVMPQLK-------GKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAA 354 (409)
Q Consensus 298 tGaakav~kVlPeL~-------gkl~g~avRVPv~~gs~vdltv~lek~~vs~eeI~~al~~aa 354 (409)
+|+++|+.|+.|||+ .+++++|+||||++||+.+++++++++ ++.+|++++|++++
T Consensus 210 ~~~~~Ee~ki~~el~~i~~~~~~~v~~t~~rVPv~~G~~~~v~v~~~~~-v~~~~i~~~l~~~~ 272 (339)
T TIGR01296 210 DGYTKEETKMLFETRKIMGIPDFKVSATCVRVPVFTGHSESVNIEFEKE-ISPEDVRELLKNAP 272 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCcEEEEeEEccccccEEEEEEEEECCC-CCHHHHHHHHhcCC
Confidence 699999999999886 379999999999999999999999999 99999999999553
No 27
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-39 Score=320.18 Aligned_cols=236 Identities=24% Similarity=0.318 Sum_probs=188.5
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCe-EEECCeEEEEEe
Q 015291 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNET-ISVDGKLIKVVS 163 (409)
Q Consensus 86 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~-l~v~gk~I~v~~ 163 (409)
++||||+| +|.||+.+++.|.++. .+++.+ +++. | +.+ .|+. +.|+|+.+.+..
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~-f~~~~~------------~~~A--S-------~rS--aG~~~~~f~~~~~~v~~ 56 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERH-FPFEEL------------VLLA--S-------ARS--AGKKYIEFGGKSIGVPE 56 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcC-CCcceE------------EEEe--c-------ccc--cCCccccccCccccCcc
Confidence 36999999 9999999999999975 334422 2222 2 223 3444 889888776622
Q ss_pred cCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCCeEEecCCccccCc-CCCc-EEecC
Q 015291 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDH-EVAN-IVSNA 238 (409)
Q Consensus 164 ~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps---~~~dvP~vV~gVN~~~~~~-~~~~-IISna 238 (409)
.-.+...|. ++||||+|.|...+++.+++..++|+ +||++.| +++|+|+|||+||++.+.. .+.+ ||+||
T Consensus 57 -~~~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~Iianp 131 (334)
T COG0136 57 -DAADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANP 131 (334)
T ss_pred -ccccccccc--cCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEECC
Confidence 115667787 89999999999999999999999998 9998765 8889999999999998754 2244 99999
Q ss_pred CcchhhhHHHHHHHHhhcCccEEEeeeeeccccccc-cccccchh----------hhhhhccccceecCCC-----chHH
Q 015291 239 SCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQR-LLDASHRD----------LRRARAAALNIVPTST-----GAAK 302 (409)
Q Consensus 239 SCTTn~Lapvlk~L~~~fGI~~~~mTTiha~Tg~Q~-llD~~~~d----------~r~~Raaa~NIIP~~t-----Gaak 302 (409)
||||.+|++.||||+++|||+++.+|||||+||+.. .++....- +-.++++|||+||++. |++|
T Consensus 132 NCst~~l~~aL~PL~~~~~i~~v~VsTyQAvSGAG~~~~~el~~q~~~~~~~~~i~~~~~~iAfNviP~I~~~~~ng~t~ 211 (334)
T COG0136 132 NCSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGAEGGVELAGQTDALLNGIPILPIGYPLAFNVIPHIDGFLDNGYTK 211 (334)
T ss_pred ChHHHHHHHHHHHHHhhcCceEEEEEEeehhhhcCccchhhHHHHHhhhccCcccccccccccccccccCCccccCCccH
Confidence 999999999999999999999999999999999854 33321100 0116899999999974 5776
Q ss_pred HHH-------HHccccCCCeeEEEEecCccceeEEEEEEEEccCCCCHHHHHHHHH
Q 015291 303 AVS-------LVMPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFR 351 (409)
Q Consensus 303 av~-------kVlPeL~gkl~g~avRVPv~~gs~vdltv~lek~~vs~eeI~~al~ 351 (409)
|+. |||+.-..+++++|+||||++||+..++++++++ ++.+|+.+.+-
T Consensus 212 EE~K~~~Et~KIlg~~~~~VsatcvRVPV~~GHse~v~ve~~~~-~~~~e~~~~~l 266 (334)
T COG0136 212 EEWKIEAETRKILGDPDIKVSATCVRVPVFYGHSEAVTVEFKKD-VDPEEIREELL 266 (334)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEEEcceecccceEEEEEecCC-CCHHHHHHHHh
Confidence 665 5666555689999999999999999999999999 99999996653
No 28
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=5.8e-36 Score=301.19 Aligned_cols=235 Identities=18% Similarity=0.316 Sum_probs=188.1
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEec
Q 015291 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (409)
Q Consensus 86 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~ 164 (409)
.+||||+| +|.+|+.++|+|+++ ++|++.-+ +++ .| +.+ .|+.+.+.|+.+.+..
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h--~~f~v~~l----------~~~--aS-------~~s--aGk~~~~~~~~l~v~~- 60 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKE--TKFNIAEV----------TLL--SS-------KRS--AGKTVQFKGREIIIQE- 60 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHC--CCCCcccE----------EEE--EC-------ccc--CCCCeeeCCcceEEEe-
Confidence 47999999 999999999999965 34673111 122 12 112 5778888888777743
Q ss_pred CCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEecCCccccCcCCCcEEecCCcc
Q 015291 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDHEVANIVSNASCT 241 (409)
Q Consensus 165 ~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISap---s~~~dvP~vV~gVN~~~~~~~~~~IISnaSCT 241 (409)
-+++ .|. ++|+||+|+|...+++++++..++|+ +||+.. ++++++|++|||||.+.++.. .+||+||+|+
T Consensus 61 ~~~~--~~~--~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEvN~e~i~~~-~~iIanPnC~ 133 (347)
T PRK06728 61 AKIN--SFE--GVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEVNAHTLKEH-KGIIAVPNCS 133 (347)
T ss_pred CCHH--Hhc--CCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCcCHHHHhcc-CCEEECCCCH
Confidence 3444 353 79999999999999999999999998 788765 477799999999999988753 4799999999
Q ss_pred hhhhHHHHHHHHhhcCccEEEeeeeeccccccc-ccccc------------chhhhhh-------hccccceecCC----
Q 015291 242 TNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQR-LLDAS------------HRDLRRA-------RAAALNIVPTS---- 297 (409)
Q Consensus 242 Tn~Lapvlk~L~~~fGI~~~~mTTiha~Tg~Q~-llD~~------------~~d~r~~-------Raaa~NIIP~~---- 297 (409)
|++++..|+||+++++|+++.++|||++||+.+ .++.. ...-.++ ++++||+||+.
T Consensus 134 tt~~~laL~PL~~~~~i~~v~V~t~qavSGAG~~gv~eL~~qt~~~l~~~~~~~~~f~~~~~~~~~~iafNviP~i~~~~ 213 (347)
T PRK06728 134 ALQMVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFT 213 (347)
T ss_pred HHHHHHHHHHHHHcCCccEEEEEEeecccccchhhHHHHHHHHHHHhcCCCCccccccccccccCCceeccccCcCCccc
Confidence 999999999999999999999999999999732 22221 1112355 99999999996
Q ss_pred -CchHHHH-------HHHc--cccCCCeeEEEEecCccceeEEEEEEEEccCCCCHHHHHHHHHHcc
Q 015291 298 -TGAAKAV-------SLVM--PQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAA 354 (409)
Q Consensus 298 -tGaakav-------~kVl--PeL~gkl~g~avRVPv~~gs~vdltv~lek~~vs~eeI~~al~~aa 354 (409)
+|+++++ +||| |+| ++++||+||||++||.+.++++++++ ++.++++++|++++
T Consensus 214 ~~g~t~EE~K~~~E~~KIL~~~~l--~VsatcvRVPV~~gHs~sv~ve~~~~-~~~~~~~~~l~~~~ 277 (347)
T PRK06728 214 DNDFTFEEVKMIQETKKILEDPNL--KMAATCVRVPVISGHSESVYIELEKE-ATVAEIKEVLFDAP 277 (347)
T ss_pred cCCccHHHHHHHHHHHHHhCCCCC--cEEEEEEecceeccEEEEEEEEECCC-CCHHHHHHHHHcCC
Confidence 5666555 5677 565 69999999999999999999999999 99999999998764
No 29
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=6.3e-36 Score=302.76 Aligned_cols=237 Identities=15% Similarity=0.130 Sum_probs=183.8
Q ss_pred eeEEEEc-CChhHHHHHH-HHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEec
Q 015291 87 LKVAING-FGRIGRNFLR-CWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr-~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~ 164 (409)
+||||+| +|.+|+.++| +|+++.++..+++... |. .+ ++..+.++|+.+.++..
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~s---------------s~-------~s--g~~~~~f~g~~~~v~~~ 57 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFS---------------TS-------QA--GGAAPSFGGKEGTLQDA 57 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEec---------------ch-------hh--CCcccccCCCcceEEec
Confidence 7999999 9999999998 6655543212233221 10 01 33445677877776543
Q ss_pred CCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEecCCccccCcC-CC--cEEecC
Q 015291 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDHE-VA--NIVSNA 238 (409)
Q Consensus 165 ~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISap---s~~~dvP~vV~gVN~~~~~~~-~~--~IISna 238 (409)
.+++ .|. ++|+||+|+|...+++++++..++|++.+||+.. ++++|+|++|||||++.+... +. ++|+||
T Consensus 58 ~~~~--~~~--~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIanP 133 (369)
T PRK06598 58 FDID--ALK--KLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFVGG 133 (369)
T ss_pred CChh--Hhc--CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEEcC
Confidence 3343 354 7999999999999999999999999655899776 478899999999999988642 12 489999
Q ss_pred CcchhhhHHHHHHHHhhcCccEEEeeeeeccccccc------------ccc-------------------------c-cc
Q 015291 239 SCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQR------------LLD-------------------------A-SH 280 (409)
Q Consensus 239 SCTTn~Lapvlk~L~~~fGI~~~~mTTiha~Tg~Q~------------llD-------------------------~-~~ 280 (409)
+|+|++++..|+||++.++|+++.++|||++||+.+ +++ + +.
T Consensus 134 nC~tt~~~laL~PL~~~~~i~~viVst~qavSGAG~~g~~eL~~qt~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (369)
T PRK06598 134 NCTVSLMLMALGGLFKNDLVEWVSVMTYQAASGAGARNMRELLTQMGALHGAVADELADPASAILDIDRKVTELMRSGDL 213 (369)
T ss_pred ChHHHHHHHHHHHHHhcCCceEEEEEeeecccccCHHHHHHHHHHHHHHhhhccccccccchhhhhhhhhhhhhcccCCC
Confidence 999999999999999999999999999999999743 111 1 00
Q ss_pred hhhhhhhccccceecCC-----CchHHHHH-------HHc----cccCCCeeEEEEecCccceeEEEEEEEEccCCCCHH
Q 015291 281 RDLRRARAAALNIVPTS-----TGAAKAVS-------LVM----PQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAE 344 (409)
Q Consensus 281 ~d~r~~Raaa~NIIP~~-----tGaakav~-------kVl----PeL~gkl~g~avRVPv~~gs~vdltv~lek~~vs~e 344 (409)
..-.+++++++|+||+. +|+++++. ||| |+| ++++||+||||++||++.++++++++ ++.+
T Consensus 214 ~~~~f~~~iafN~iP~I~~~~~~g~t~EE~K~~~EtrKIL~~~~~~l--~vs~tcVRVPV~~gHs~sv~ve~~~~-~~~~ 290 (369)
T PRK06598 214 PTDNFGVPLAGSLIPWIDKDLGNGQSREEWKGQAETNKILGLTKNPI--PVDGLCVRVGAMRCHSQALTIKLKKD-VPLA 290 (369)
T ss_pred CcccCCCcccccccCcCCCcccCCchHHHHHHHHHHHHHhCCCCCCC--eEEEEEEEcceeccEEEEEEEEECCC-CCHH
Confidence 11135689999999996 57776554 566 455 69999999999999999999999999 9999
Q ss_pred HHHHHHHHcc
Q 015291 345 DVNAAFRKAA 354 (409)
Q Consensus 345 eI~~al~~aa 354 (409)
|++++|+++.
T Consensus 291 ~i~~~L~~~~ 300 (369)
T PRK06598 291 EIEEILAAHN 300 (369)
T ss_pred HHHHHHHhcC
Confidence 9999999854
No 30
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-31 Score=268.36 Aligned_cols=235 Identities=20% Similarity=0.263 Sum_probs=189.0
Q ss_pred ceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEe
Q 015291 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (409)
Q Consensus 85 m~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~ 163 (409)
+++||||+| +|.+|+.++|+|.++++|.++|+.+... .+ .|+.+.++|+.+.+.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~----------------------~s--aG~~~~~~~~~~~v~- 57 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE----------------------ES--AGETLRFGGKSVTVQ- 57 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc----------------------Cc--CCceEEECCcceEEE-
Confidence 368999999 9999999999999987677887666321 11 467777888777763
Q ss_pred cCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEecCCccccCc-CCCcEEecCC
Q 015291 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDH-EVANIVSNAS 239 (409)
Q Consensus 164 ~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISap---s~~~dvP~vV~gVN~~~~~~-~~~~IISnaS 239 (409)
++++++|. ++|+||+|+|...++++++...++|+ +||+.. ++++++|+++||||.+.++. .+.+||+||+
T Consensus 58 --~~~~~~~~--~~Dvvf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~~~~iIAnPg 131 (336)
T PRK08040 58 --DAAEFDWS--QAQLAFFVAGREASAAYAEEATNAGC--LVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNIIAVAD 131 (336)
T ss_pred --eCchhhcc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECChHhcCCCCCceEccccCHHHHhhhccCCEEECCC
Confidence 56778886 79999999999999999999999999 688665 35668999999999965543 2267999999
Q ss_pred cchhhhHHHHHHHHhhcCccEEEeeeeeccccccc------------cccc-cchhhhhhhccccceecCCC---chH--
Q 015291 240 CTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQR------------LLDA-SHRDLRRARAAALNIVPTST---GAA-- 301 (409)
Q Consensus 240 CTTn~Lapvlk~L~~~fGI~~~~mTTiha~Tg~Q~------------llD~-~~~d~r~~Raaa~NIIP~~t---Gaa-- 301 (409)
|+|++++..|+||+++++|+++.|+|++++||..+ ++++ +.....+++++++|++|+.. |..
T Consensus 132 C~~t~~~laL~PL~~~~~i~~viV~t~qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~~pyi~~~~g~~~~ 211 (336)
T PRK08040 132 SLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQLAFNMLPLLPDSEGSVRE 211 (336)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEeeccccccChhhHHHHHHHHHHhhcCCCcccccCchhhcCceeeccCCcCCcchH
Confidence 99999999999999999999999999999999843 2222 11113567789999999942 232
Q ss_pred -----HHHHHHc--cccCCCeeEEEEecCccceeEEEEEEEEccCCCCHHHHHHHHHHc
Q 015291 302 -----KAVSLVM--PQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKA 353 (409)
Q Consensus 302 -----kav~kVl--PeL~gkl~g~avRVPv~~gs~vdltv~lek~~vs~eeI~~al~~a 353 (409)
.+++++| |++ +++.+++||||++||+..++++++++ ++.+++.++|+++
T Consensus 212 erh~~~Ei~kiL~~~~~--~vs~t~~~vPv~rG~~~tv~v~~~~~-v~~~~i~~~l~~~ 267 (336)
T PRK08040 212 ERRLVDQVRKILQDEGL--PISVSCVQSPVFYGHAQMVHFEALRP-LAAEEARDALEQG 267 (336)
T ss_pred hhhhHHHHHHHhCCCCC--eEEEEeEEecchhcEEEEEEEEECCC-CCHHHHHHHHhcC
Confidence 2445555 233 49999999999999999999999999 9999999999974
No 31
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=99.97 E-value=3.3e-31 Score=267.02 Aligned_cols=238 Identities=17% Similarity=0.242 Sum_probs=186.4
Q ss_pred cccceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEE
Q 015291 82 ETVAKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIK 160 (409)
Q Consensus 82 ~~~m~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~ 160 (409)
.+.+++||+|.| +|.+|+.++|+|.+++.|.++++.+... .+ .|+.+.++|+.+.
T Consensus 3 ~~~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~----------------------rs--aGk~~~~~~~~~~ 58 (344)
T PLN02383 3 LTENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASA----------------------RS--AGKKVTFEGRDYT 58 (344)
T ss_pred ccCCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEcc----------------------CC--CCCeeeecCceeE
Confidence 345678999999 9999999999999876666776555321 11 3455556665555
Q ss_pred EEecCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEecCCccccCcC-----CC
Q 015291 161 VVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDHE-----VA 232 (409)
Q Consensus 161 v~~~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISap---s~~~dvP~vV~gVN~~~~~~~-----~~ 232 (409)
+. .-+++ .|. ++|+||+|+|...+++++++..++|+ +||+.. ++++++|+++||||.+.++.. +.
T Consensus 59 v~-~~~~~--~~~--~~D~vf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~ 131 (344)
T PLN02383 59 VE-ELTED--SFD--GVDIALFSAGGSISKKFGPIAVDKGA--VVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKG 131 (344)
T ss_pred EE-eCCHH--HHc--CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCC
Confidence 52 22332 343 79999999999999999999989998 677655 467789999999999988652 13
Q ss_pred cEEecCCcchhhhHHHHHHHHhhcCccEEEeeeeeccccccc-cccccc------------hhhhhhhccccceecCC--
Q 015291 233 NIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQR-LLDASH------------RDLRRARAAALNIVPTS-- 297 (409)
Q Consensus 233 ~IISnaSCTTn~Lapvlk~L~~~fGI~~~~mTTiha~Tg~Q~-llD~~~------------~d~r~~Raaa~NIIP~~-- 297 (409)
+||+||+|+|++++..|+||+++++|+++.++|++++||..+ .++..+ ..-+++...++|++|+.
T Consensus 132 ~iIanPgC~~t~~~laL~PL~~~~~i~~vvv~t~~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~~~~~~ayn~~ph~~~ 211 (344)
T PLN02383 132 ALIANPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNIFAQQYAFNLFSHNAP 211 (344)
T ss_pred cEEECCCcHHHHHHHHHHHHHHcCCeeEEEEEeeecccccCHHHHHHHHHHHHHHhcCCCCchhccCCccccccccccCc
Confidence 599999999999999999999999999999999999999843 233322 12256788999999995
Q ss_pred ---CchHHHHH-------HHc--cccCCCeeEEEEecCccceeEEEEEEEEccCCCCHHHHHHHHHHc
Q 015291 298 ---TGAAKAVS-------LVM--PQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKA 353 (409)
Q Consensus 298 ---tGaakav~-------kVl--PeL~gkl~g~avRVPv~~gs~vdltv~lek~~vs~eeI~~al~~a 353 (409)
+|+++++. |++ |++ +++.+|+||||++||+..++++++++ ++.++++++|+++
T Consensus 212 ~~~~g~~~~E~~~~~e~~kil~~~~~--~v~~t~~~vPv~rG~~~sv~v~~~~~-v~~~~~~~~l~~~ 276 (344)
T PLN02383 212 MQENGYNEEEMKLVKETRKIWNDDDV--KVTATCIRVPVMRAHAESINLQFEKP-LDEATAREILASA 276 (344)
T ss_pred cccCCCChHHHHHHHHHHHHhCCCCC--eEEEEeEecCccccEEEEEEEEECCC-CCHHHHHHHHhcC
Confidence 35444443 455 334 59999999999999999999999999 9999999999974
No 32
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.97 E-value=1.2e-30 Score=262.18 Aligned_cols=235 Identities=18% Similarity=0.223 Sum_probs=184.5
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEec
Q 015291 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (409)
Q Consensus 86 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~ 164 (409)
++||||.| +|.+|+.++|+|.++..|.++++.+... -+ .|+.|.+.|+.+.+.
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~----------------------~~--aG~~l~~~~~~l~~~-- 57 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS----------------------ES--AGHSVPFAGKNLRVR-- 57 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc----------------------cc--CCCeeccCCcceEEe--
Confidence 37999999 9999999999999876666776666431 01 345566666555552
Q ss_pred CCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEecCCccccCc-CCCcEEecCCc
Q 015291 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDH-EVANIVSNASC 240 (409)
Q Consensus 165 ~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISap---s~~~dvP~vV~gVN~~~~~~-~~~~IISnaSC 240 (409)
+++..+|+ ++|+||.|+|...++++++..+++|+ +||+.. +++ ++|++|||||.+.++. .+.+||+||+|
T Consensus 58 -~~~~~~~~--~vD~vFla~p~~~s~~~v~~~~~~G~--~VIDlS~~fR~~-~~pl~lPEvn~~~i~~~~~~~iIAnPgC 131 (336)
T PRK05671 58 -EVDSFDFS--QVQLAFFAAGAAVSRSFAEKARAAGC--SVIDLSGALPSA-QAPNVVPEVNAERLASLAAPFLVSSPSA 131 (336)
T ss_pred -eCChHHhc--CCCEEEEcCCHHHHHHHHHHHHHCCC--eEEECchhhcCC-CCCEEecccCHHHHccccCCCEEECCCc
Confidence 33334464 79999999999999999999999998 567544 354 8999999999998865 22579999999
Q ss_pred chhhhHHHHHHHHhhcCccEEEeeeeeccccccc-cccc------------cchhhhhhhccccceecCCC-----chHH
Q 015291 241 TTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQR-LLDA------------SHRDLRRARAAALNIVPTST-----GAAK 302 (409)
Q Consensus 241 TTn~Lapvlk~L~~~fGI~~~~mTTiha~Tg~Q~-llD~------------~~~d~r~~Raaa~NIIP~~t-----Gaak 302 (409)
+|++++..|+||++.|+++++.++|++++||..+ .++. +...-.++++++||++|+.. |.++
T Consensus 132 ~~t~~~laL~PL~~~~~~~~v~v~t~~~vSGaG~~~~~~L~~~~~~~~n~~~y~~~~~~~~iafn~~P~ig~~~~~gh~~ 211 (336)
T PRK05671 132 SAVALAVALAPLKGLLDIQRVQVTACLAVSSLGREGVSELARQTAELLNARPLEPRFFDRQVAFNLLAQVGAPDAQGHTA 211 (336)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEEeecCcccCcccchHHHHHHHHHhCCCCccccccccccccccccccCccccCCccH
Confidence 9999999999999999999999999999999743 1121 01112468999999999863 6665
Q ss_pred HHHHHcccc-------CCCeeEEEEecCccceeEEEEEEEEccCCCCHHHHHHHHHHc
Q 015291 303 AVSLVMPQL-------KGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKA 353 (409)
Q Consensus 303 av~kVlPeL-------~gkl~g~avRVPv~~gs~vdltv~lek~~vs~eeI~~al~~a 353 (409)
++.|+.||+ +-+++.+++||||++||+..++++++++ ++.+|++++|+++
T Consensus 212 eE~r~~~Ei~kiL~~~~~~v~~t~~~vPv~rG~~~tv~v~~~~~-~~~~~~~~~l~~~ 268 (336)
T PRK05671 212 LERRLVAELRQLLGLPELKISVTCIQVPVFFGDSLSVALQSAAP-VDLAAVNAALEAA 268 (336)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEeEEechhhhEeeEEEEEECCC-CCHHHHHHHHhCC
Confidence 555444433 2359999999999999999999999999 9999999999954
No 33
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=99.97 E-value=2.6e-30 Score=259.80 Aligned_cols=258 Identities=22% Similarity=0.276 Sum_probs=190.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCC-Ch-hhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEe
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GV-KNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~-~~-~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~ 163 (409)
+||||+| +|.+|+.++|+|.++ +.++|+++-+.. .. +.+..++.+. .++.+. ..+ ..+.+.
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~--~~~~l~~v~~~~~~~g~~~~~~~~~~-~~~~~~--------~~~----~~~~~~- 64 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH--PYFELAKVVASPRSAGKRYGEAVKWI-EPGDMP--------EYV----RDLPIV- 64 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCceEEEEEEChhhcCCcchhhcccc-ccCCCc--------ccc----ceeEEE-
Confidence 5899999 899999999999877 448998885431 00 0011111000 000000 000 122331
Q ss_pred cCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCC-CCCCCCCeEEecCCccccCc-C-------CCcE
Q 015291 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP-AKGADIPTYVVGVNEKDYDH-E-------VANI 234 (409)
Q Consensus 164 ~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISap-s~~~dvP~vV~gVN~~~~~~-~-------~~~I 234 (409)
..+++ .| .++|+||+|++...+.+.++...++|++.+..|+. ++++++|+++|++|++.|.. . +.+|
T Consensus 65 ~~~~~--~~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~i 140 (341)
T TIGR00978 65 EPEPV--AS--KDVDIVFSALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFI 140 (341)
T ss_pred eCCHH--Hh--ccCCEEEEeCCHHHHHHHHHHHHHCCCEEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccE
Confidence 12332 34 37999999999999999999888999954333443 45667899999999987753 1 2359
Q ss_pred EecCCcchhhhHHHHHHHHhhcCccEEEeeeeeccccccccccccchhhhhhhccccceecCCCchH----HHHHHHccc
Q 015291 235 VSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAA----KAVSLVMPQ 310 (409)
Q Consensus 235 ISnaSCTTn~Lapvlk~L~~~fGI~~~~mTTiha~Tg~Q~llD~~~~d~r~~Raaa~NIIP~~tGaa----kav~kVlPe 310 (409)
|+||+|+|+|+++.|+||+++++|+++.|||+|++||+++.... .+.+++|++|+..+.. .|+.++|+.
T Consensus 141 VanPgC~~t~~~lal~pL~~~~~i~~v~v~t~~gvSgaG~~~~~-------~~~~~~Ni~py~~~~ehrh~~Ei~~il~~ 213 (341)
T TIGR00978 141 VTNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGAGYPGVP-------SMDILDNIIPHIGGEEEKIERETRKILGK 213 (341)
T ss_pred EeCCCcHHHHHHHHHHHHHHhCCCcEEEEEEEEccCCCCCCCCc-------cchhhCCeEecCcHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999764221 2457999999987752 467889987
Q ss_pred cCC--------CeeEEEEecCccceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCccccccCCCeEEe
Q 015291 311 LKG--------KLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSV 372 (409)
Q Consensus 311 L~g--------kl~g~avRVPv~~gs~vdltv~lek~~vs~eeI~~al~~aa~~~lkgil~~~e~p~VS~ 372 (409)
+.+ +++.+++|||+++||+.+++++++++ ++.+|++++|+++.+.++...+--+.+|+|-.
T Consensus 214 ~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~v~l~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~fv~~ 282 (341)
T TIGR00978 214 LENGKIEPAPFSVSATTTRVPVLDGHTESVHVEFDKK-FDIEEIREALKSFRGLPQKLGLPSAPEKPIIV 282 (341)
T ss_pred cccCcccCCCceEEEEEEEcCccccEEEEEEEEeCCC-CCHHHHHHHHHhCcCccccccCCCCCCCcEEE
Confidence 744 59999999999999999999999999 99999999999988765555555566777654
No 34
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.97 E-value=2e-29 Score=254.18 Aligned_cols=244 Identities=21% Similarity=0.268 Sum_probs=176.7
Q ss_pred cceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEE-eCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEE
Q 015291 84 VAKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV-NDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKV 161 (409)
Q Consensus 84 ~m~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaI-nd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v 161 (409)
+|++||+|+| +|.+|+.++|+|.++ ++++|+++ ....... ..+ +..++ +...-.. .+. + +.+.+
T Consensus 1 ~~~~~V~I~GatG~iG~~l~~~L~~~--p~~el~~~~~s~~~~G---~~~--~~~~~-~~~~~~~-~~~---~--~~~~v 66 (349)
T PRK08664 1 MMKLKVGILGATGMVGQRFVQLLANH--PWFEVTALAASERSAG---KTY--GEAVR-WQLDGPI-PEE---V--ADMEV 66 (349)
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHcC--CCceEEEEEcChhhcC---Ccc--ccccc-ccccccc-ccc---c--cceEE
Confidence 3578999999 999999999999975 56899988 3221100 000 11010 0000000 000 0 12333
Q ss_pred EecCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCC-CCCCCCCeEEecCCccccCc---------CC
Q 015291 162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP-AKGADIPTYVVGVNEKDYDH---------EV 231 (409)
Q Consensus 162 ~~~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISap-s~~~dvP~vV~gVN~~~~~~---------~~ 231 (409)
. ..+++. |. ++|+||+|++...+.+.++...++|++.+..|+. +..++.|++++++|++.|.. .+
T Consensus 67 ~-~~~~~~--~~--~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~~~ 141 (349)
T PRK08664 67 V-STDPEA--VD--DVDIVFSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGWD 141 (349)
T ss_pred E-eCCHHH--hc--CCCEEEEeCChhHHHHHHHHHHHCCCEEEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhccCC
Confidence 2 234443 32 7899999999999988888888899854333443 23336899999999987632 11
Q ss_pred CcEEecCCcchhhhHHHHHHHHhhcCccEEEeeeeeccccccccccccchhhhhhhccccceecCCCch--------HHH
Q 015291 232 ANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGA--------AKA 303 (409)
Q Consensus 232 ~~IISnaSCTTn~Lapvlk~L~~~fGI~~~~mTTiha~Tg~Q~llD~~~~d~r~~Raaa~NIIP~~tGa--------aka 303 (409)
.+|||||||+|+|+++.|+||++ |||+++.|||+|++||+++-. +..+.+++|++|+..+. .+.
T Consensus 142 ~~iVa~p~C~~t~~~l~l~pL~~-~gl~~i~v~~~~g~SgaG~~~-------~~~~~~~~N~~p~~~~~ehrh~~Ei~~~ 213 (349)
T PRK08664 142 GFIVTNPNCSTIGLVLALKPLMD-FGIERVHVTTMQAISGAGYPG-------VPSMDIVDNVIPYIGGEEEKIEKETLKI 213 (349)
T ss_pred ceEEEccCHHHHHHHHHHHHHHH-CCCcEEEEEEEeccccCCccc-------chhhhhhcCcccccCchhhhhhHHHHHH
Confidence 36999999999999999999999 999999999999999996532 22457899999998775 233
Q ss_pred HHHH----ccccCCCeeEEEEecCccceeEEEEEEEEccCCCCHHHHHHHHHHccc
Q 015291 304 VSLV----MPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAE 355 (409)
Q Consensus 304 v~kV----lPeL~gkl~g~avRVPv~~gs~vdltv~lek~~vs~eeI~~al~~aa~ 355 (409)
++++ +|.++.+++++++|||+++||+.+++++++++ ++.+||+++|+++..
T Consensus 214 l~~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~~~l~~~-~~~~~v~~~~~~~~~ 268 (349)
T PRK08664 214 LGKFEGGKIVPADFPISATCHRVPVIDGHTEAVFVKFKED-VDPEEIREALESFKG 268 (349)
T ss_pred hhhcccccccCCCceEEEEeEEccccccEEEEEEEEeCCC-CCHHHHHHHHHhccC
Confidence 3333 45567789999999999999999999999999 999999999998764
No 35
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=99.94 E-value=7.5e-25 Score=220.67 Aligned_cols=237 Identities=16% Similarity=0.165 Sum_probs=172.3
Q ss_pred ceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCe-EEEEE
Q 015291 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGK-LIKVV 162 (409)
Q Consensus 85 m~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk-~I~v~ 162 (409)
|++||||.| +|.+|+.+++.|.++ ++++++++-+..... ..+. ..|+.+. +. ...+
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~--p~~elv~v~~~~~~g---~~l~--~~~~~~~--------------~~~~~~~- 58 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNH--PEVEIVAVTSRSSAG---KPLS--DVHPHLR--------------GLVDLVL- 58 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcC--CCceEEEEECccccC---cchH--HhCcccc--------------cccCcee-
Confidence 458999999 799999999999876 568998887631110 0010 0111111 00 0112
Q ss_pred ecCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCC-C------------------CCeEEe
Q 015291 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGA-D------------------IPTYVV 220 (409)
Q Consensus 163 ~~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISap---s~~~-d------------------vP~vV~ 220 (409)
. +.++..|. ++|+||.|++.....+.++..+++|+ .||+.+ ++++ | +|..+|
T Consensus 59 ~--~~~~~~~~--~vD~Vf~alP~~~~~~~v~~a~~aG~--~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lp 132 (343)
T PRK00436 59 E--PLDPEILA--GADVVFLALPHGVSMDLAPQLLEAGV--KVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLP 132 (343)
T ss_pred e--cCCHHHhc--CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecC
Confidence 1 12222343 69999999999999999999988887 788655 3543 4 799999
Q ss_pred cCCccccCcCCCcEEecCCcchhhhHHHHHHHHhhcCcc--EEEeeeeeccccccc-cccccchhhhhhhccccceecCC
Q 015291 221 GVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIV--KGAMTTTHSYTGDQR-LLDASHRDLRRARAAALNIVPTS 297 (409)
Q Consensus 221 gVN~~~~~~~~~~IISnaSCTTn~Lapvlk~L~~~fGI~--~~~mTTiha~Tg~Q~-llD~~~~d~r~~Raaa~NIIP~~ 297 (409)
|+|.+.++. .+||+||+|+|++++..|+||++..+|+ ++.++|++++||..+ ..+..+...+.+.-.++|++|+.
T Consensus 133 e~~~~~i~~--~~iIanPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~~~~~~~~~~~~~y~~~~h~ 210 (343)
T PRK00436 133 ELNREEIKG--ARLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSGAGRKASEGTLFSEVNENLRPYKVGGHR 210 (343)
T ss_pred ccCHHHhcC--CCEEECCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEecccCCCCccccccchhhcCCeeecccCCCC
Confidence 999998874 5899999999999999999999998898 899999999999855 44444322222222367777764
Q ss_pred CchHHHHHHHccccCCCeeEEEEecCccceeEEEEEEEEccCCCCHHHHHHHHHHcc
Q 015291 298 TGAAKAVSLVMPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAA 354 (409)
Q Consensus 298 tGaakav~kVlPeL~gkl~g~avRVPv~~gs~vdltv~lek~~vs~eeI~~al~~aa 354 (409)
. ..|+.+.+-.+.++++.+++|||+++||++.++++++++ ++.+|++++|+++-
T Consensus 211 h--~~Ei~~~l~~~~~~v~~t~~~vPv~~G~~~tv~v~~~~~-~~~~~~~~~~~~~y 264 (343)
T PRK00436 211 H--TPEIEQELSALAGEVSFTPHLVPMTRGILATIYARLKDP-VTAEDVRAAYEEFY 264 (343)
T ss_pred C--HHHHHHHHHHhcCCEEEEeEEecccCcEEEEEEEEeCCC-CCHHHHHHHHHHHh
Confidence 2 344444443332279999999999999999999999999 99999999998644
No 36
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=99.91 E-value=3.1e-23 Score=211.78 Aligned_cols=239 Identities=11% Similarity=0.077 Sum_probs=169.2
Q ss_pred cceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEE
Q 015291 84 VAKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (409)
Q Consensus 84 ~m~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~ 162 (409)
.|++||+|.| +|.+|+.++|+|.++ |.++|+.+... ...|+- +.. .... +.+....-+
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~h--P~~el~~l~s~-------------~saG~~---i~~-~~~~--l~~~~~~~~ 94 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANH--PDFEITVMTAD-------------RKAGQS---FGS-VFPH--LITQDLPNL 94 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhC--CCCeEEEEECh-------------hhcCCC---chh-hCcc--ccCccccce
Confidence 4678999999 999999999999988 56888777532 000110 000 0000 111111111
Q ss_pred ecCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCC--------CCeEEecCCccc-cCc-
Q 015291 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGAD--------IPTYVVGVNEKD-YDH- 229 (409)
Q Consensus 163 ~~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISap---s~~~d--------vP~vV~gVN~~~-~~~- 229 (409)
. +.+..+|. ++|+||.|+|...+++.++. +++|+ +||+.. +.+++ +|..+|++|.+. |.-
T Consensus 95 ~--~~~~~~~~--~~DvVf~Alp~~~s~~i~~~-~~~g~--~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglp 167 (381)
T PLN02968 95 V--AVKDADFS--DVDAVFCCLPHGTTQEIIKA-LPKDL--KIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLT 167 (381)
T ss_pred e--cCCHHHhc--CCCEEEEcCCHHHHHHHHHH-HhCCC--EEEEcCchhccCCcccchhccCCCCCCcccchhhhcccc
Confidence 1 12222353 79999999999989898887 57776 567544 35656 799999999874 431
Q ss_pred -------CCCcEEecCCcchhhhHHHHHHHHhhcCc--cEEEeeeeeccccccc-cccccc-hhhh-hhhccccceecCC
Q 015291 230 -------EVANIVSNASCTTNCLAPFVKVMDEELGI--VKGAMTTTHSYTGDQR-LLDASH-RDLR-RARAAALNIVPTS 297 (409)
Q Consensus 230 -------~~~~IISnaSCTTn~Lapvlk~L~~~fGI--~~~~mTTiha~Tg~Q~-llD~~~-~d~r-~~Raaa~NIIP~~ 297 (409)
.+.+||+||+|.|++++..|+||+++++| +++.++|++++||..+ ..+..+ .... --|+.++|..|+.
T Consensus 168 E~~r~~i~~~~iIAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGAG~~~~~~~l~~e~~~n~~~y~~~~h~h~ 247 (381)
T PLN02968 168 ELQREEIKSARLVANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGAKEANLYTEIAEGIGAYGVTRHRHV 247 (381)
T ss_pred hhCHHHhcCCCEEECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeeccccCcccchhhhHHHhcccceeeccCCCCCc
Confidence 22579999999999999999999999999 7899999999999854 333322 1111 1367788888776
Q ss_pred CchHHHHHHHc-cccCCCeeEEEEecCccceeEEEEEEEEccCCCCHHHHHHHHHHc
Q 015291 298 TGAAKAVSLVM-PQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKA 353 (409)
Q Consensus 298 tGaakav~kVl-PeL~gkl~g~avRVPv~~gs~vdltv~lek~~vs~eeI~~al~~a 353 (409)
-.....+.+++ +++ +++.|++|||+++||+..++++++++ ++.+|+.++|+++
T Consensus 248 pEie~~~~~~~~~~~--~v~ft~~~vPv~rG~~~tv~v~~~~~-~~~~~v~~~~~~~ 301 (381)
T PLN02968 248 PEIEQGLADAAGSKV--TPSFTPHLMPMSRGMQSTVYVHYAPG-VTAEDLHQHLKER 301 (381)
T ss_pred chHHHHHHHHhCCCC--CEEEEeEEeeccccEEEEEEEEeCCC-CCHHHHHHHHHHh
Confidence 32223334443 444 59999999999999999999999999 9999999999985
No 37
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=99.91 E-value=4.3e-23 Score=208.19 Aligned_cols=237 Identities=16% Similarity=0.174 Sum_probs=165.1
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCe-EEEEEec
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGK-LIKVVSN 164 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk-~I~v~~~ 164 (409)
|||||.| +|.+|+.++|.|.++ |.++++++-++-. .....+ ...|+.+. +. ...+ ..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h--P~~el~~l~~s~~--sagk~~--~~~~~~l~--------------~~~~~~~-~~ 59 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH--PEVEITYLVSSRE--SAGKPV--SEVHPHLR--------------GLVDLNL-EP 59 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC--CCceEEEEeccch--hcCCCh--HHhCcccc--------------ccCCcee-ec
Confidence 5899999 899999999999876 5689887633200 000000 01111111 10 1112 11
Q ss_pred CCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCC-------------------CCCeEEecC
Q 015291 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGA-------------------DIPTYVVGV 222 (409)
Q Consensus 165 ~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISap---s~~~-------------------dvP~vV~gV 222 (409)
.++++ |.+ ++|+||.|++...+++.++..+++|+ +||+.. ++++ ++|..+||+
T Consensus 60 ~~~~~--~~~-~~DvVf~alP~~~s~~~~~~~~~~G~--~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~ 134 (346)
T TIGR01850 60 IDEEE--IAE-DADVVFLALPHGVSAELAPELLAAGV--KVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPEL 134 (346)
T ss_pred CCHHH--hhc-CCCEEEECCCchHHHHHHHHHHhCCC--EEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCcc
Confidence 12222 322 79999999999999999999999886 677554 3553 589999999
Q ss_pred CccccCcCCCcEEecCCcchhhhHHHHHHHHhhcCcc--EEEeeeeeccccccc-cccccchhhhhhhccccceecCCCc
Q 015291 223 NEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIV--KGAMTTTHSYTGDQR-LLDASHRDLRRARAAALNIVPTSTG 299 (409)
Q Consensus 223 N~~~~~~~~~~IISnaSCTTn~Lapvlk~L~~~fGI~--~~~mTTiha~Tg~Q~-llD~~~~d~r~~Raaa~NIIP~~tG 299 (409)
|.+.+.. .+||+||+|.++++...|+||++++.|+ ++.++|++++||..+ ..+..+...+...-...|+.|+..-
T Consensus 135 n~~~i~~--~~iianPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG~~~~~~~~~~~~~~~~~~y~~~~h~h~ 212 (346)
T TIGR01850 135 HREEIKG--ARLIANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAGRKASPANHFPEVNENLRPYKVTGHRHT 212 (346)
T ss_pred CHHHhCC--CcEEEcCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccCcCccccccchhhcCCeeeeccCCcCcH
Confidence 9998864 5799999999999999999999998887 799999999999865 3344432222111122344443211
Q ss_pred --hHHHHHHHc-cccCCCeeEEEEecCccceeEEEEEEEEccCCCCHHHHHHHHHHcc
Q 015291 300 --AAKAVSLVM-PQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAA 354 (409)
Q Consensus 300 --aakav~kVl-PeL~gkl~g~avRVPv~~gs~vdltv~lek~~vs~eeI~~al~~aa 354 (409)
-.+++++++ +++ +++.+++|||+++||+..++++++++ ++.+|++++|+++-
T Consensus 213 ~Ei~~~l~~~~~~~~--~v~ft~~~vPv~rG~~~tv~v~~~~~-~~~~~~~~~~~~~y 267 (346)
T TIGR01850 213 PEIEQELGRLAGGKV--KVSFTPHLVPMTRGILATIYAKLKDG-LTEEDLRAAYEEFY 267 (346)
T ss_pred HHHHHHHHHhcCCCC--CEEEEeEEeeccccEEEEEEEecCCC-CCHHHHHHHHHHHh
Confidence 112334443 222 59999999999999999999999999 99999999999754
No 38
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.87 E-value=4.7e-22 Score=190.77 Aligned_cols=239 Identities=18% Similarity=0.214 Sum_probs=172.0
Q ss_pred eEE-EEc-CChhHHHHHHHHHhCCCCCceEEEEeCC---CChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEE
Q 015291 88 KVA-ING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS---GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (409)
Q Consensus 88 kVa-InG-fGrIGr~vlr~l~~~~~~~~~vVaInd~---~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~ 162 (409)
|+| |.| +|.+|++++-+|..| |.|+|..+..+ ++..|. + + |+|+.+.-.. +. -..+.|
T Consensus 5 k~a~vlGaTGaVGQrFi~lLsdh--P~f~ikvLgAS~RSAGK~ya---~--a---~~wkqt~~lp--~~----~~e~~V- 67 (361)
T KOG4777|consen 5 KSAPVLGATGAVGQRFISLLSDH--PYFSIKVLGASKRSAGKRYA---F--A---GNWKQTDLLP--ES----AHEYTV- 67 (361)
T ss_pred cccceeeccchhHHHHHHHhccC--CcceeeeecccccccCCceE---e--c---ccchhccccc--ch----hhhhhH-
Confidence 466 999 999999999999887 56776555332 222221 1 1 2333221110 00 033445
Q ss_pred ecCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCCeEEecCCccccCc----------
Q 015291 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDH---------- 229 (409)
Q Consensus 163 ~~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps---~~~dvP~vV~gVN~~~~~~---------- 229 (409)
++-+++.|. ++||||+..+.....|.-+...++|- +|+|+.. +++++|++||+||+|.++.
T Consensus 68 ~ec~~~~F~----ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~ 141 (361)
T KOG4777|consen 68 EECTADSFN----ECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKM 141 (361)
T ss_pred hhcChhhcc----cccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhheeccccCCC
Confidence 234566654 89999999999999888888888888 8898763 6778999999999998764
Q ss_pred CCCcEEecCCcchhhhHHHHHHHHhhc-CccEEEeeeeeccccccccccccchhhhhhhccccceecCCCchH----HHH
Q 015291 230 EVANIVSNASCTTNCLAPFVKVMDEEL-GIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAA----KAV 304 (409)
Q Consensus 230 ~~~~IISnaSCTTn~Lapvlk~L~~~f-GI~~~~mTTiha~Tg~Q~llD~~~~d~r~~Raaa~NIIP~~tGaa----kav 304 (409)
.+.-||+|+||+|..++..|||||++| .|++..++|||+.||+... +.. -.-.+..||+|...|.. .+.
T Consensus 142 ~~G~iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAiSGAG~a---pgv---~~vdildnilp~iggee~k~ewet 215 (361)
T KOG4777|consen 142 GKGAIIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISGAGAA---PGV---ELVDILDNILPGIGGEENKFEWET 215 (361)
T ss_pred CCceEEecCCCCeeeEEeechhHHhhccchhhhhhhhhhhhccCCcC---CCc---hHHHHHHhhcCCCCccchhhhHHH
Confidence 113499999999999999999999999 5999999999999997431 110 11246679999987653 244
Q ss_pred HHHccccC-----------CCeeEEEEecCccceeEEEEEEEEccC-CCCHHHHHHHHHHccc
Q 015291 305 SLVMPQLK-----------GKLNGIALRVPTPNVSVVDLVVNVEKK-GITAEDVNAAFRKAAE 355 (409)
Q Consensus 305 ~kVlPeL~-----------gkl~g~avRVPv~~gs~vdltv~lek~-~vs~eeI~~al~~aa~ 355 (409)
.|+|-.++ .++++.|-|||+.++|+.-+.+.+.-+ ..+.+++.+++.+..-
T Consensus 216 ~kiL~s~n~~i~~~~l~ee~~vsaqcnRv~v~Dgh~~cis~~f~~~~~pa~~qv~~~l~eyv~ 278 (361)
T KOG4777|consen 216 AKILFSHNAPILDNGLNEEEMVSAQCNRVIVNDGHVKCISTCFRVPVMPAHAQVVNLLFEYVL 278 (361)
T ss_pred HHhhhccCCccccccccHHHhhhhhcceeeEecCceEEEEEEeecCCCCcHHHHHHHHHhccC
Confidence 56663322 246789999999999999999999844 1468999999988763
No 39
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=99.87 E-value=9.8e-21 Score=188.78 Aligned_cols=221 Identities=14% Similarity=0.088 Sum_probs=162.1
Q ss_pred ceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEe
Q 015291 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (409)
Q Consensus 85 m~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~ 163 (409)
|++||||+| +|-+|+.++|+|.+| |+++++++... .+..+
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~h--p~~~l~~~~s~--------------------------~~~~~----------- 41 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGR--SDIELLSIPEA--------------------------KRKDA----------- 41 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcC--CCeEEEEEecC--------------------------CCCcc-----------
Confidence 679999999 999999999999988 45888766421 01111
Q ss_pred cCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEecCCccccCc-CCCcEEecCC
Q 015291 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDH-EVANIVSNAS 239 (409)
Q Consensus 164 ~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISap---s~~~dvP~vV~gVN~~~~~~-~~~~IISnaS 239 (409)
.+....|. ++|+||.|++...+++++++..++|+ +||+.+ +.++++|..+||+|++..+. ...++|+||+
T Consensus 42 --~~~~~~~~--~~DvvFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEvn~~~~~~i~~~~~IanPg 115 (313)
T PRK11863 42 --AARRELLN--AADVAILCLPDDAAREAVALIDNPAT--RVIDASTAHRTAPGWVYGFPELAPGQRERIAAAKRVANPG 115 (313)
T ss_pred --cCchhhhc--CCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChhhhcCCCCeEEcCccCHHHHHHhhcCCeEEcCC
Confidence 01112354 68999999999999999999889988 577655 46668999999999765432 2267999999
Q ss_pred cchhhhHHHHHHHHhhcCccEEEeeeeecccc---ccc-cccccchhhhhhhccccceecCCCc-h---HHHHHHHcccc
Q 015291 240 CTTNCLAPFVKVMDEELGIVKGAMTTTHSYTG---DQR-LLDASHRDLRRARAAALNIVPTSTG-A---AKAVSLVMPQL 311 (409)
Q Consensus 240 CTTn~Lapvlk~L~~~fGI~~~~mTTiha~Tg---~Q~-llD~~~~d~r~~Raaa~NIIP~~tG-a---akav~kVlPeL 311 (409)
|.+++++..|+||+++-.|++...++++++|| ..+ ..+..+.+ + --+..|++|..-| . ..|+.+.|-.+
T Consensus 116 C~~Ta~~laL~PL~~~~li~~~~~i~i~a~SG~SGAG~~~~~~~~~~--~-~~~~~n~~~Y~~~~~HrH~pEi~~~l~~~ 192 (313)
T PRK11863 116 CYPTGAIALLRPLVDAGLLPADYPVSINAVSGYSGGGKAMIAAYEAA--P-DGKAPAFRLYGLGLAHKHLPEMQAHAGLA 192 (313)
T ss_pred cHHHHHHHHHHHHHHcCCcccCceEEEEEccccccCCccchHHHhhh--h-hhhccCeeeccCCcCCcchHHHHHHhccc
Confidence 99999999999999976666665788999964 322 22222200 0 1246799999755 3 34555555433
Q ss_pred CCCeeEEEEecCccceeEEEEEEEE---ccCCCCHHHHHHHHHHccc
Q 015291 312 KGKLNGIALRVPTPNVSVVDLVVNV---EKKGITAEDVNAAFRKAAE 355 (409)
Q Consensus 312 ~gkl~g~avRVPv~~gs~vdltv~l---ek~~vs~eeI~~al~~aa~ 355 (409)
. ++.-+..-+|+..|++..+++++ +++ ++.+|+.++++++-+
T Consensus 193 ~-~~~F~Phl~p~~rGil~Ti~~~~~~~~~~-~~~~~i~~~~~~~Y~ 237 (313)
T PRK11863 193 R-RPIFTPSVGNFRQGMLVTVPLHLRLLPGG-PTAEDLHAALADHYA 237 (313)
T ss_pred c-CcEEEeeEccccCcEEEEEEEEecccCCC-CCHHHHHHHHHHHcC
Confidence 2 34445556899999999999997 888 999999999998654
No 40
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=99.76 E-value=2.5e-17 Score=163.98 Aligned_cols=220 Identities=11% Similarity=0.081 Sum_probs=160.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~ 165 (409)
.||+|.| .|-.|..++|+|..+ |+++++.+... + . + ...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H--P~~el~~l~s~-------------~--------------~---~--------~~~ 41 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR--DDIELLSIAPD-------------R--------------R---K--------DAA 41 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC--CCeEEEEEecc-------------c--------------c---c--------CcC
Confidence 4899999 999999999999987 56998777531 0 0 0 001
Q ss_pred CCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEecCCccccCc-CCCcEEecCCcc
Q 015291 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDH-EVANIVSNASCT 241 (409)
Q Consensus 166 ~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISap---s~~~dvP~vV~gVN~~~~~~-~~~~IISnaSCT 241 (409)
+++++ +. ++|+||.|++...++++++...++|+ +||+.+ +.++++|..+||+|++..+. ...++|+||+|.
T Consensus 42 ~~~~~-~~--~~D~vFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEln~~~~~~i~~a~lIAnPgC~ 116 (310)
T TIGR01851 42 ERAKL-LN--AADVAILCLPDDAAREAVSLVDNPNT--CIIDASTAYRTADDWAYGFPELAPGQREKIRNSKRIANPGCY 116 (310)
T ss_pred CHhHh-hc--CCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChHHhCCCCCeEEccccCHHHHHhhccCCEEECCCCH
Confidence 12222 12 68999999999999999998888888 577655 46668999999999775432 226899999999
Q ss_pred hhhhHHHHHHHHhhcCccEEEeeeeecccc---ccc-cccccchhhhhhhccccceecCCCc----hHHHHHHHccccCC
Q 015291 242 TNCLAPFVKVMDEELGIVKGAMTTTHSYTG---DQR-LLDASHRDLRRARAAALNIVPTSTG----AAKAVSLVMPQLKG 313 (409)
Q Consensus 242 Tn~Lapvlk~L~~~fGI~~~~mTTiha~Tg---~Q~-llD~~~~d~r~~Raaa~NIIP~~tG----aakav~kVlPeL~g 313 (409)
+++++..|+||+++..|++...+++++.|| ..+ ..+..++..++. -...|+-|..-+ ...|+...+-.+ -
T Consensus 117 aTa~~LaL~PL~~~~li~~~~~~~~~a~SG~SGAGr~~~~~l~~q~~~~-e~~~~~~~Y~~~~~HrH~pEi~q~l~~~-~ 194 (310)
T TIGR01851 117 PTGFIALMRPLVEAGILPADFPITINAVSGYSGGGKAMIADYEQGSADN-PSLQPFRIYGLALTHKHLPEMRVHSGLA-L 194 (310)
T ss_pred HHHHHHHHHHHHHcCCccccceEEEEeccccCccChhhhHHhhhcccch-hhccCceeccCCCCCCcHHHHHHHhCCC-C
Confidence 999999999999987777776799999987 322 223232211111 124566676533 233444444322 3
Q ss_pred CeeEEEEecCccceeEEEEEEEE---ccCCCCHHHHHHHHHHcc
Q 015291 314 KLNGIALRVPTPNVSVVDLVVNV---EKKGITAEDVNAAFRKAA 354 (409)
Q Consensus 314 kl~g~avRVPv~~gs~vdltv~l---ek~~vs~eeI~~al~~aa 354 (409)
++.-+..-+|...|=+..+++.+ +++ ++.+|+.++++++-
T Consensus 195 ~v~FtPhl~p~~RGil~Ti~~~l~~~~~~-~~~~~~~~~~~~~Y 237 (310)
T TIGR01851 195 PPIFTPAVGNFAQGMAVTIPLHLQTLASK-VSPADIHAALADYY 237 (310)
T ss_pred CEEEEeEEccccCcEEEEEEEEeccCCCC-CCHHHHHHHHHHHH
Confidence 57888899999999999999999 888 99999999999753
No 41
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.52 E-value=2.2e-14 Score=142.62 Aligned_cols=165 Identities=22% Similarity=0.149 Sum_probs=115.8
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~ 165 (409)
++||||+|+|.||+..+..+... ++++++++-|. +++.. .+++--.+|. . ..++|.+- +
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~--~~velvAVvdi-d~es~--gla~A~~~Gi---~--------~~~~~ie~-L---- 62 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRS--EHLEPGAMVGI-DPESD--GLARARRLGV---A--------TSAEGIDG-L---- 62 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcC--CCcEEEEEEeC-ChhhH--HHHHHHHcCC---C--------cccCCHHH-H----
Confidence 68999999999999988777753 56999999876 32211 0110011111 0 01111110 1
Q ss_pred CCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEecCCccccCc-CCCcEEecCCcchhh
Q 015291 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDH-EVANIVSNASCTTNC 244 (409)
Q Consensus 166 ~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~~~dvP~vV~gVN~~~~~~-~~~~IISnaSCTTn~ 244 (409)
.++.+|. ++|+||+|||....++.+++.+++|+ .||+..+.- ..|++||+||.+.+.. ...+||+||+|+|+.
T Consensus 63 -L~~~~~~--dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~-~~PlvVP~VN~~~~~~~~~~~iia~p~~ati~ 136 (302)
T PRK08300 63 -LAMPEFD--DIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAA-IGPYCVPAVNLDEHLDAPNVNMVTCGGQATIP 136 (302)
T ss_pred -HhCcCCC--CCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccc-cCCcccCcCCHHHHhcccCCCEEECccHHHHH
Confidence 1122454 79999999999999999999999998 667654322 6799999999987643 226899999999999
Q ss_pred hHHHHHHHHhhcCccEEEeeeeeccc-cc--ccccccc
Q 015291 245 LAPFVKVMDEELGIVKGAMTTTHSYT-GD--QRLLDAS 279 (409)
Q Consensus 245 Lapvlk~L~~~fGI~~~~mTTiha~T-g~--Q~llD~~ 279 (409)
++..|+++++. ++.++. +||++.| |. ..-+|+.
T Consensus 137 ~v~Al~~v~~~-~~~eIv-at~~s~s~g~gtr~nidE~ 172 (302)
T PRK08300 137 IVAAVSRVAPV-HYAEIV-ASIASKSAGPGTRANIDEF 172 (302)
T ss_pred HHHHhcccCcC-ceeeee-eeehhhccCCcccccHHHH
Confidence 99999998765 888877 9999998 32 3445553
No 42
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.33 E-value=5.9e-12 Score=124.54 Aligned_cols=160 Identities=21% Similarity=0.192 Sum_probs=112.5
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhh--hhhhhcccccccccCceEEEecCCeEEECCeEEEEEe
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN--ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~--~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~ 163 (409)
++||||+|.|+||+..+..+.+. +++++++|-++ +++. ++. - -.+| -...+++.+..+
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~--~~~elvaV~d~-d~es~~la~-A---~~~G-----------i~~~~~~~e~ll-- 60 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRS--EHLEMVAMVGI-DPESDGLAR-A---RELG-----------VKTSAEGVDGLL-- 60 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhC--CCcEEEEEEeC-CcccHHHHH-H---HHCC-----------CCEEECCHHHHh--
Confidence 37999999999999887766653 45999999876 2221 111 0 0011 111122211111
Q ss_pred cCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeC-CCCCCCCCeEEecCCccccCc-CCCcEEecCCcc
Q 015291 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA-PAKGADIPTYVVGVNEKDYDH-EVANIVSNASCT 241 (409)
Q Consensus 164 ~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISa-ps~~~dvP~vV~gVN~~~~~~-~~~~IISnaSCT 241 (409)
++ .++|+|++||+.....+.+.+.+++|. .||.. |.. ..|++||+||.+.... ...++|++++|.
T Consensus 61 -~~--------~dIDaV~iaTp~~~H~e~a~~al~aGk--~VIdekPa~--~~plvvp~VN~~~~~~~~~~~iv~c~~~a 127 (285)
T TIGR03215 61 -AN--------PDIDIVFDATSAKAHARHARLLAELGK--IVIDLTPAA--IGPYVVPAVNLDEHLDAPNVNMVTCGGQA 127 (285)
T ss_pred -cC--------CCCCEEEECCCcHHHHHHHHHHHHcCC--EEEECCccc--cCCccCCCcCHHHHhcCcCCCEEEcCcHH
Confidence 11 268999999999999999999999997 45544 443 5799999999886643 226899999999
Q ss_pred hhhhHHHHHHHHhhcCccEEEeeeeecccc-c--cccccccc
Q 015291 242 TNCLAPFVKVMDEELGIVKGAMTTTHSYTG-D--QRLLDASH 280 (409)
Q Consensus 242 Tn~Lapvlk~L~~~fGI~~~~mTTiha~Tg-~--Q~llD~~~ 280 (409)
|+.++..++.+++...+ ..++||++.++ . ..-+|.+.
T Consensus 128 tip~~~al~r~~d~~~~--~iv~ti~s~S~g~g~r~~idel~ 167 (285)
T TIGR03215 128 TIPIVAAISRVAPVHYA--EIVASIASRSAGPGTRANIDEFT 167 (285)
T ss_pred HHHHHHHHHHhhccccE--EEEEEEEeeccCCCchhHHHHHH
Confidence 99999999999987755 56788999986 2 34455543
No 43
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.15 E-value=2.8e-09 Score=107.34 Aligned_cols=237 Identities=16% Similarity=0.187 Sum_probs=151.1
Q ss_pred ceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCC--CChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEE
Q 015291 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKV 161 (409)
Q Consensus 85 m~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~--~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v 161 (409)
|++||+|+| .|-.|-+++|+|..| |++|+..+... .+.. + ...|..+.+-+ ...+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~H--p~ve~~~~ss~~~~g~~-~------~~~~p~l~g~~-------------~l~~ 58 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGH--PDVELILISSRERAGKP-V------SDVHPNLRGLV-------------DLPF 58 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcC--CCeEEEEeechhhcCCc-h------HHhCccccccc-------------cccc
Confidence 568999999 999999999999988 56886555432 1110 0 01111111100 0111
Q ss_pred EecCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCC---CC-CC-----------C----CeEE---
Q 015291 162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KG-AD-----------I----PTYV--- 219 (409)
Q Consensus 162 ~~~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps---~~-~d-----------v----P~vV--- 219 (409)
+.-+++.+ ...++|+||.|+....+++.++..++.|++ ||+.+. .. .. . .--|
T Consensus 59 -~~~~~~~~--~~~~~DvvFlalPhg~s~~~v~~l~~~g~~--VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGL 133 (349)
T COG0002 59 -QTIDPEKI--ELDECDVVFLALPHGVSAELVPELLEAGCK--VIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGL 133 (349)
T ss_pred -ccCChhhh--hcccCCEEEEecCchhHHHHHHHHHhCCCe--EEECCcccccCCHHHHHHhhCCCCCCchhhhcccccC
Confidence 11234443 223689999999999999999999999995 664432 11 00 0 1233
Q ss_pred ecCCccccCcCCCcEEecCCcchhhhHHHHHHHHhh--cCccEE-Eeeeeeccccccccc-cccchhhhhhhccccceec
Q 015291 220 VGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEE--LGIVKG-AMTTTHSYTGDQRLL-DASHRDLRRARAAALNIVP 295 (409)
Q Consensus 220 ~gVN~~~~~~~~~~IISnaSCTTn~Lapvlk~L~~~--fGI~~~-~mTTiha~Tg~Q~ll-D~~~~d~r~~Raaa~NIIP 295 (409)
+|.|.+.++. -+.|+||.|-.+|....|+||-++ ..+... .+-..=.+||..+-. ...+- --...|+.|
T Consensus 134 pEl~~e~i~~--A~lIAnPGCypTa~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~~~~~-----~e~~~~~~~ 206 (349)
T COG0002 134 PELHREKIRG--AKLIANPGCYPTAAILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASVKNHF-----PEVNDSLRP 206 (349)
T ss_pred cccCHHHHhc--CCEeeCCCchHHHHHHHHHHHHHcCCcCCCCceEEEEeEecCcCCCCccccccc-----hhhcccccc
Confidence 4566666654 579999999999999999999875 223442 344444445543311 11111 112347777
Q ss_pred CC---CchHHHHHHHccccC---CCeeEEEEecCccceeEEEEEEEEccCCCCHHHHHHHHHHcccC
Q 015291 296 TS---TGAAKAVSLVMPQLK---GKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEG 356 (409)
Q Consensus 296 ~~---tGaakav~kVlPeL~---gkl~g~avRVPv~~gs~vdltv~lek~~vs~eeI~~al~~aa~~ 356 (409)
.. +-...|+..-+..|. .++.-|..-+|...|=+..+++.+++. ++.+||.+++++.=++
T Consensus 207 Y~~~~HrH~pEi~q~l~~l~~~~~~v~FtPhl~p~~RGIl~Ti~~~l~~~-~t~~~i~~~y~~~Y~~ 272 (349)
T COG0002 207 YGLTGHRHTPEIEQHLGRLAGRKVPVIFTPHLGPFVRGILATIYLKLKDL-VTLEELHAAYEEFYAG 272 (349)
T ss_pred ccccccCchHHHHHHhhhcccCcCceEEecccccccceEEEEEEEecCCC-CCHHHHHHHHHHHhCC
Confidence 74 233345555555444 347778888999999999999999999 9999999999986543
No 44
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.98 E-value=3.3e-10 Score=97.75 Aligned_cols=113 Identities=26% Similarity=0.298 Sum_probs=77.3
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCC-h-hhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEec
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGG-V-KNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~-~-~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~ 164 (409)
||||+| +|.+|+.++|+|.++ |+++++.+-.... . +.+. ..++.+.. ...+.+..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h--p~~e~~~~~~~~~~~g~~~~------~~~~~~~~-------------~~~~~~~~- 58 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH--PDFELVALVSSSRSAGKPLS------EVFPHPKG-------------FEDLSVED- 58 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--STEEEEEEEESTTTTTSBHH------HTTGGGTT-------------TEEEBEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcC--CCccEEEeeeeccccCCeee------hhcccccc-------------ccceeEee-
Confidence 799999 999999999999986 5699888765311 0 1111 11111110 11233322
Q ss_pred CCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEecCCccccC
Q 015291 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYD 228 (409)
Q Consensus 165 ~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISap---s~~~dvP~vV~gVN~~~~~ 228 (409)
.+++.+ .++|+||.|++...+++.+++.++.|+ .||+.. +.+++.|+++||||.+.++
T Consensus 59 ~~~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~--~ViD~s~~~R~~~~~~~~~pevn~~~i~ 119 (121)
T PF01118_consen 59 ADPEEL----SDVDVVFLALPHGASKELAPKLLKAGI--KVIDLSGDFRLDDDVPYGLPEVNREQIK 119 (121)
T ss_dssp TSGHHH----TTESEEEE-SCHHHHHHHHHHHHHTTS--EEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred cchhHh----hcCCEEEecCchhHHHHHHHHHhhCCc--EEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence 233333 289999999999999999999999999 678654 3566899999999998764
No 45
>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....
Probab=98.94 E-value=2.2e-09 Score=99.48 Aligned_cols=103 Identities=16% Similarity=0.238 Sum_probs=77.8
Q ss_pred HHHHHhh-cCccEEEeeeeecccccccc-cccc------------chhhhhhhccccceecCCCc-------hHHHHH--
Q 015291 249 VKVMDEE-LGIVKGAMTTTHSYTGDQRL-LDAS------------HRDLRRARAAALNIVPTSTG-------AAKAVS-- 305 (409)
Q Consensus 249 lk~L~~~-fGI~~~~mTTiha~Tg~Q~l-lD~~------------~~d~r~~Raaa~NIIP~~tG-------aakav~-- 305 (409)
|+||+++ ++++++.++|++++||+.+- ++.. .++-.....+++|++|+.-+ ..+++.
T Consensus 1 L~PL~~~l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~h~h~~e~~~el~~ 80 (184)
T PF02774_consen 1 LAPLHKALFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFEHRHEPEIEEELKM 80 (184)
T ss_dssp HHHHHHTHHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBTTTSHHHBHHHHHH
T ss_pred CcchhhCcCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcccCchHHHHHHHHh
Confidence 6899998 99999999999999998551 1111 12224467899999999644 333332
Q ss_pred -----HHccccCCCeeEEEEecCccceeEEEEEEEEc-cCCCCHHHHHHHHHHc
Q 015291 306 -----LVMPQLKGKLNGIALRVPTPNVSVVDLVVNVE-KKGITAEDVNAAFRKA 353 (409)
Q Consensus 306 -----kVlPeL~gkl~g~avRVPv~~gs~vdltv~le-k~~vs~eeI~~al~~a 353 (409)
+++..- .+++.+|+|||+++||+..++++++ ++ .+++++.++|.+.
T Consensus 81 ~~~~~~~l~~~-~~v~~t~~~vPv~rG~~~ti~v~~~~~~-~~~~~~~~~~~~~ 132 (184)
T PF02774_consen 81 IAETRKILGFP-PRVSFTCVRVPVFRGHLATIYVELKETP-VDVEEIYEAFYKG 132 (184)
T ss_dssp HHHHHHHCTET-TEEEEEEEEESSSSEEEEEEEEEESSSH-HHHHHHHHHHHTS
T ss_pred hccccceeecc-ccccccEEEEeeeeeEceeEEEEecCCH-HHHHHHHHHHhCC
Confidence 233222 2799999999999999999999995 88 8889998888865
No 46
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.20 E-value=3.3e-06 Score=72.45 Aligned_cols=113 Identities=27% Similarity=0.277 Sum_probs=67.7
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~ 166 (409)
||||.| .|++|+.+++.+.+. +.++++++-.. + +.....++ ..++ .+ . .+ +. .+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~--~~~~l~av~~~-~-~~~~~~~~--~~~~------------~~--~--~~-~~--~~ 55 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH--PDFEVVALAAS-A-RSAGKRVS--EAGP------------HL--K--GE-VV--LE 55 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC--CCceEEEEEec-h-hhcCcCHH--HHCc------------cc--c--cc-cc--cc
Confidence 689999 799999999998875 35899988432 1 10000000 0010 00 0 00 00 11
Q ss_pred CCCCCccccCccEEEeCCCCCCChhhHH---HHHHcCCCEEEEeCC---CCCCCCCeEEecCCcccc
Q 015291 167 PLQLPWAELGIDIVIEGTGVFVDGPGAG---KHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDY 227 (409)
Q Consensus 167 p~~l~W~~~gvDiVle~TG~f~s~e~a~---~hl~aGakkVVISap---s~~~dvP~vV~gVN~~~~ 227 (409)
.+..+|...+.|+||.|++.....+... ..++.|+ +||+.. +.+++.|.++|++|.+.+
T Consensus 56 ~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~--~viD~s~~~~~~~~~~~~~~~~n~~~~ 120 (122)
T smart00859 56 LEPEDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGV--KVIDLSSAFRMDDDVPYGLPEVNPEAI 120 (122)
T ss_pred cccCChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCC--EEEECCccccCCCCceEEcCccCHHHh
Confidence 2222344458899999999877666433 2334454 888544 356678999999998755
No 47
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.07 E-value=5.7e-06 Score=81.34 Aligned_cols=146 Identities=14% Similarity=0.165 Sum_probs=88.6
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEec
Q 015291 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (409)
Q Consensus 85 m~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~ 164 (409)
|.+||||+|+|.||+.+.+.|.......+++++|++... +....+. +. ..+ .
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~-~~~~~~~-----------------~~--------~~~--~ 52 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAA-DLPPALA-----------------GR--------VAL--L 52 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCH-HHHHHhh-----------------cc--------Ccc--c
Confidence 678999999999999999998754334589999987621 1110000 01 112 1
Q ss_pred CCCCCC-CccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCC-CCCCCCeEEecCCccccC---cCCCcEEecCC
Q 015291 165 RDPLQL-PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA-KGADIPTYVVGVNEKDYD---HEVANIVSNAS 239 (409)
Q Consensus 165 ~~p~~l-~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps-~~~dvP~vV~gVN~~~~~---~~~~~IISnaS 239 (409)
.++++| .| ..|+|+||+|...-++++++.|++|+.-+|+|--. .|++ ...+..+ ....+|. -||
T Consensus 53 ~~l~~ll~~---~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~-------~~~~l~~~A~~~g~~i~-ipS 121 (267)
T PRK13301 53 DGLPGLLAW---RPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGALADDA-------LRARLIAAAEAGGARIR-VPA 121 (267)
T ss_pred CCHHHHhhc---CCCEEEECCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHH-------HHHHHHHHHHhCCCEEE-EeC
Confidence 345553 45 58999999999999999999999999887777332 3211 1111111 1112332 234
Q ss_pred cchhhhHHHHHHHHhhcCccEEEeeeeecccc
Q 015291 240 CTTNCLAPFVKVMDEELGIVKGAMTTTHSYTG 271 (409)
Q Consensus 240 CTTn~Lapvlk~L~~~fGI~~~~mTTiha~Tg 271 (409)
-..-.|-- |+.. ...|+.++.+||.-...+
T Consensus 122 GAigGlD~-l~aa-~~~~~~~v~~~t~K~P~s 151 (267)
T PRK13301 122 GAIAGLDY-LQAV-AGRDDAEVVYESRKPVAA 151 (267)
T ss_pred hHHHhHHH-HHHh-hccCceEEEEEEecChhH
Confidence 33333322 2222 346899999888855543
No 48
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.88 E-value=0.00018 Score=72.84 Aligned_cols=213 Identities=20% Similarity=0.239 Sum_probs=114.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~ 165 (409)
++||||+|+|+|||.+++++..+ ++++||+|-+.-+.+.+. + . +.+....
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~--pd~ELVgV~dr~~~~~~~---~----------~---------------~~v~~~~ 52 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQ--PDMELVGVFSRRGAETLD---T----------E---------------TPVYAVA 52 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhC--CCcEEEEEEcCCcHHHHh---h----------c---------------CCccccC
Confidence 58999999999999999999865 569999997753222111 0 0 0111111
Q ss_pred CCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEecCCccccCcCCCcEEecCCcchhhh
Q 015291 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (409)
Q Consensus 166 ~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~~~dvP~vV~gVN~~~~~~~~~~IISnaSCTTn~L 245 (409)
+.+. +. .++|+|+-|++.....+.+...+++|.. ||-+-+. ....|=..-.+..-.-......+|+. ---=.+
T Consensus 53 d~~e--~l-~~iDVViIctPs~th~~~~~~~L~aG~N-VV~s~~~-h~~~p~~~~~ld~AAk~~g~vsvi~~--GwDPG~ 125 (324)
T TIGR01921 53 DDEK--HL-DDVDVLILCMGSATDIPEQAPYFAQFAN-TVDSFDN-HRDIPRHRQVMDAAAKAAGNVSVIST--GWDPGM 125 (324)
T ss_pred CHHH--hc-cCCCEEEEcCCCccCHHHHHHHHHcCCC-EEECCCc-ccCCHHHHHHHHHHHHHcCCEEEEEC--CCCcCh
Confidence 1111 11 3699999999999999999999999984 4444221 00011000000000000000123331 111123
Q ss_pred HHHHHHHHhhcCccEEEeeeeeccccccccccccchhh-hhh---hccccceecCCCchHHHHHHHc-cccCCCeeEEEE
Q 015291 246 APFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDL-RRA---RAAALNIVPTSTGAAKAVSLVM-PQLKGKLNGIAL 320 (409)
Q Consensus 246 apvlk~L~~~fGI~~~~mTTiha~Tg~Q~llD~~~~d~-r~~---Raaa~NIIP~~tGaakav~kVl-PeL~gkl~g~av 320 (409)
-.+.+.+.+.. +-++ +.||..++.++..|.+. |+- +.+.+=-|| ...++..|+ -+.. .+++..
T Consensus 126 ~si~r~~~ea~-lp~g-----~~yt~wG~g~s~ghs~a~~~~~Gv~~a~~~tip----~~dal~~v~~Ge~~-~l~~~~- 193 (324)
T TIGR01921 126 FSINRVYGEAV-LPKG-----QTYTFWGPGLSQGHSDAVRRIDGVKKAVQYTLP----SEDALEKARRGEAP-ELTGKQ- 193 (324)
T ss_pred HHHHHHHHhcc-CCCC-----cceeccCCCcCchhhhhhcccCCcccceEEEEe----hHHHHHHHHcCCcc-cccccc-
Confidence 44445554433 3333 45666666666666543 332 223555566 345667775 2211 222221
Q ss_pred ecCccceeEEEEEEEEccCCCCHHHHHHHHHHcc
Q 015291 321 RVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAA 354 (409)
Q Consensus 321 RVPv~~gs~vdltv~lek~~vs~eeI~~al~~aa 354 (409)
.|--..++.++.- .+.++|.+.++.-+
T Consensus 194 ------~h~r~~~vv~e~g-~~~~~v~~~i~~~p 220 (324)
T TIGR01921 194 ------THKRQCFVVLKDG-ADHERVENEIRTMP 220 (324)
T ss_pred ------ceeeeEEEEecCC-CCHHHHHHHHhhCc
Confidence 2334556667776 78999999998655
No 49
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=97.70 E-value=0.00028 Score=68.76 Aligned_cols=260 Identities=20% Similarity=0.243 Sum_probs=136.2
Q ss_pred ccccccceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCC--CChhhhhhhhcccccccccCceEEEecCCeEEEC
Q 015291 79 VKKETVAKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASHLLKYDSLLGTFKADVKIVDNETISVD 155 (409)
Q Consensus 79 ~~~~~~m~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~--~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~ 155 (409)
.++..+..+|||..| -|--|++++|++..+ |.+||..+... .+-+ |+ +-++ .++.+ ..+...
T Consensus 12 ~~~~~~k~~rv~LlGArGYTGknlv~Lin~H--Pylevthvssrel~Gqk-----l~-~ytk----~eiqy---~~lst~ 76 (340)
T KOG4354|consen 12 SSVKPEKDIRVGLLGARGYTGKNLVRLINNH--PYLEVTHVSSRELAGQK-----LE-VYTK----LEIQY---ADLSTV 76 (340)
T ss_pred cccccCCCceEEEEeccccchhhHHHHhcCC--CceEEEeeehhhhcCCc-----cc-Ccch----hheee---cccchh
Confidence 345556679999999 899999999999877 66897666531 1100 00 0000 11111 011111
Q ss_pred CeEEEEEecCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCC--eEE---ecCCc-cccCc
Q 015291 156 GKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIP--TYV---VGVNE-KDYDH 229 (409)
Q Consensus 156 gk~I~v~~~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~~~dvP--~vV---~gVN~-~~~~~ 229 (409)
+ +.-..+ | .-+|..+.+...-.-+.+...-....-|-++|.-...---.| -.+ +|+|+ ++++.
T Consensus 77 D--~~klee--~-------~avd~wvmaLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~n 145 (340)
T KOG4354|consen 77 D--AVKLEE--P-------HAVDHWVMALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIKN 145 (340)
T ss_pred h--HHHhhc--C-------CceeeeeeecchhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHhh
Confidence 1 110011 1 135555555554444444443333444556674322100123 344 45674 35544
Q ss_pred CCCcEEecCCcchhh----hHHHHHHHHhhcCccEEEeeeeeccccccccccccchhhhhhhccccceecCCCchHHHHH
Q 015291 230 EVANIVSNASCTTNC----LAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVS 305 (409)
Q Consensus 230 ~~~~IISnaSCTTn~----Lapvlk~L~~~fGI~~~~mTTiha~Tg~Q~llD~~~~d~r~~Raaa~NIIP~~tGaakav~ 305 (409)
.+.|+||.|-.+. |.|++|.+.- .-+ +-.+--|||+..--. +..| ..-++.|+||..-.--..++
T Consensus 146 --a~~iaNPGCYaTgsQl~l~Pllk~i~g---~p~--ifgvSGySGAGtkps-pkNd---~~~l~nnlipY~ltdHiHer 214 (340)
T KOG4354|consen 146 --ARLIANPGCYATGSQLPLVPLLKAILG---KPE--IFGVSGYSGAGTKPS-PKND---YSELANNLIPYGLTDHIHER 214 (340)
T ss_pred --hhhccCCCcccccCcccchHHHHHhcC---Ccc--eeeeccccCCCCCCC-CccC---HHHHhcCCccccccccchhH
Confidence 5789999996553 5677776542 222 122234565532110 1122 24578999998522112333
Q ss_pred HHccccCCCeeEEEEecCccceeEEEEEEEEccCCCCHHHHHHHHHHcccC-CCCccccccCCCeEEecCCCCCc
Q 015291 306 LVMPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEG-PLKGILAVCDVPLVSVDFRCSDV 379 (409)
Q Consensus 306 kVlPeL~gkl~g~avRVPv~~gs~vdltv~lek~~vs~eeI~~al~~aa~~-~lkgil~~~e~p~VS~Df~~~~~ 379 (409)
.|--.++-.+.-+.--.|-+.|-...+++.+++. ++.||++++++..-++ +|--++ .|-|+| -|..|.-|
T Consensus 215 EIs~r~k~~VaF~PHv~qwfqGi~lTi~vpmkks-v~~~elr~lyk~~YedE~lvhV~--ddvPlv-kdv~gsh~ 285 (340)
T KOG4354|consen 215 EISQRSKVTVAFTPHVMQWFQGIQLTIYVPMKKS-VRTEELRQLYKTSYEDEELVHVL--DDVPLV-KDVRGSHY 285 (340)
T ss_pred hHHHhhCCceeechhHHHHhhhceEEEEEeecCc-ccHHHHHHHHHhhccCcceeeee--ccccce-eccCCcce
Confidence 3332333334444444566677677888889998 9999999999976544 343333 234554 35555444
No 50
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.63 E-value=8e-05 Score=72.99 Aligned_cols=88 Identities=26% Similarity=0.316 Sum_probs=58.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCC-ChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~-~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~ 165 (409)
|||||.|+|+||+.+++.+... +++++++|-+.. ..+.... .. +. .+.++ .
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~--~~~~l~~v~~~~~~~~~~~~-------------~~----~~-------~~~~~--~ 53 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHD--PDLRVDWVIVPEHSIDAVRR-------------AL----GE-------AVRVV--S 53 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhC--CCceEEEEEEcCCCHHHHhh-------------hh----cc-------CCeee--C
Confidence 6999999999999999998765 457887776421 1110000 00 00 12232 2
Q ss_pred CCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEE
Q 015291 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (409)
Q Consensus 166 ~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVI 206 (409)
+.+++. ..+|+|+|||+.....+.+...+++|.. |++
T Consensus 54 d~~~l~---~~~DvVve~t~~~~~~e~~~~aL~aGk~-Vvi 90 (265)
T PRK13303 54 SVDALP---QRPDLVVECAGHAALKEHVVPILKAGID-CAV 90 (265)
T ss_pred CHHHhc---cCCCEEEECCCHHHHHHHHHHHHHcCCC-EEE
Confidence 344442 3689999999998888999999999975 444
No 51
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.39 E-value=0.00049 Score=69.84 Aligned_cols=153 Identities=18% Similarity=0.290 Sum_probs=80.6
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCC-------CCCceEEEEeCCC---------ChhhhhhhhcccccccccCceEEEec
Q 015291 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDSG---------GVKNASHLLKYDSLLGTFKADVKIVD 148 (409)
Q Consensus 85 m~ikVaInGfGrIGr~vlr~l~~~~-------~~~~~vVaInd~~---------~~~~~a~Ll~yDS~~G~f~~~v~~~~ 148 (409)
|.+||||.|+|.||+.+++.|.+++ ..+++||+|-|.- +++. +..+-..+|.+.
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~---~~~~~~~~~~~~------- 70 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLEL---ALKVKEETGKLA------- 70 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHH---HHHHHhccCCcc-------
Confidence 6799999999999999999987642 1258999998741 1111 111101111000
Q ss_pred CCeEEECCeEEEEEecCCCCCCCccccCccEEEeCCCCCCC-----hhhHHHHHHcCCCEEEEeCCCCCCCCCeEEecCC
Q 015291 149 NETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVD-----GPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVN 223 (409)
Q Consensus 149 ~~~l~v~gk~I~v~~~~~p~~l~W~~~gvDiVle~TG~f~s-----~e~a~~hl~aGakkVVISaps~~~dvP~vV~gVN 223 (409)
.+.+.. ...+++++ ..+.++|+|+|||+.... .+.+...+++|. -||++- + .|+-. +
T Consensus 71 ----~~~~~~----~~~d~~el-l~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~Gk--hVVtaN-K---~pla~---~ 132 (341)
T PRK06270 71 ----DYPEGG----GEISGLEV-IRSVDADVVVEATPTNIETGEPALSHCRKALERGK--HVVTSN-K---GPLAL---A 132 (341)
T ss_pred ----cCcccc----ccCCHHHH-hhccCCCEEEECCcCcccccchHHHHHHHHHHCCC--EEEcCC-c---HHHHh---h
Confidence 000000 00122221 122368999999986543 577788899987 455541 1 12211 1
Q ss_pred ccccCc--CCCcEEecCCcchhhhHHHHHHHHhhcCccEEEeeeee
Q 015291 224 EKDYDH--EVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTH 267 (409)
Q Consensus 224 ~~~~~~--~~~~IISnaSCTTn~Lapvlk~L~~~fGI~~~~mTTih 267 (409)
.+.+.. .+.++.=--.++...-.|+++.|.+. +....+..++
T Consensus 133 ~~eL~~~A~~~g~~~~~ea~v~~glPii~~l~~~--l~g~~I~~I~ 176 (341)
T PRK06270 133 YKELKELAKKNGVRFRYEATVGGAMPIINLAKET--LAGNDIKSIK 176 (341)
T ss_pred HHHHHHHHHHcCCEEEEeeeeeechhHHHHHHhh--cccCceEEEE
Confidence 122211 11122111245566678999999875 3444444433
No 52
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.35 E-value=0.00053 Score=66.17 Aligned_cols=93 Identities=26% Similarity=0.338 Sum_probs=64.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~ 166 (409)
|+|+|+|+|+||..+++.+.+-. -+++++++-|. +.+.+-++.+ + +.++.. .+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~-~~~e~v~v~D~-~~ek~~~~~~--~------------------~~~~~~-----s~ 53 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGR-VDFELVAVYDR-DEEKAKELEA--S------------------VGRRCV-----SD 53 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCC-cceeEEEEecC-CHHHHHHHHh--h------------------cCCCcc-----cc
Confidence 58999999999999999987532 45899999875 3333323332 1 111111 11
Q ss_pred CCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 015291 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (409)
Q Consensus 167 p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISap 209 (409)
.+++- .++|+++||++.---+++.++.|++|..-+|+|--
T Consensus 54 ide~~---~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVG 93 (255)
T COG1712 54 IDELI---AEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVG 93 (255)
T ss_pred HHHHh---hccceeeeeCCHHHHHHHhHHHHhcCCCEEEEech
Confidence 22221 27899999999988889999999999988777754
No 53
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.25 E-value=0.00043 Score=67.97 Aligned_cols=95 Identities=22% Similarity=0.285 Sum_probs=60.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~ 165 (409)
|||+|+| +|++|+.+++.+.+. +++++|++-|..+.+.. .+|. +.+.+.. . .| +.++ .
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~--~~~elvav~d~~~~~~~----~~~~--~~~~~~~----~-----~g--v~~~--~ 60 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAA--EGLQLVAAFERHGSSLQ----GTDA--GELAGIG----K-----VG--VPVT--D 60 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCCcccc----CCCH--HHhcCcC----c-----CC--ceee--C
Confidence 7999999 899999999999865 56999998873222111 0010 1110000 0 01 2232 2
Q ss_pred CCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEE
Q 015291 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (409)
Q Consensus 166 ~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVI 206 (409)
+++.+ ...+|+|+|+|......+.+...+++|.. ||+
T Consensus 61 d~~~l---~~~~DvVIdfT~p~~~~~~~~~al~~g~~-vVi 97 (266)
T TIGR00036 61 DLEAV---ETDPDVLIDFTTPEGVLNHLKFALEHGVR-LVV 97 (266)
T ss_pred CHHHh---cCCCCEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence 34444 13589999999988888999999999974 455
No 54
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.17 E-value=0.0013 Score=64.90 Aligned_cols=88 Identities=24% Similarity=0.214 Sum_probs=58.4
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~ 165 (409)
++||||+|+|+||+.+++.|... .+.+++++|-|. +.+...-+.+ . ++.. ..+ .
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~-~~~~el~aV~dr-~~~~a~~~a~---~-----------------~g~~--~~~--~ 59 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRG-LPGLTLSAVAVR-DPQRHADFIW---G-----------------LRRP--PPV--V 59 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhc-CCCeEEEEEECC-CHHHHHHHHH---h-----------------cCCC--ccc--C
Confidence 58999999999999999998753 245899999876 2222211110 0 0000 000 2
Q ss_pred CCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCC
Q 015291 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (409)
Q Consensus 166 ~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGak 202 (409)
+++++-. ++|+|++|++...-.+.+...+++|..
T Consensus 60 ~~eell~---~~D~Vvi~tp~~~h~e~~~~aL~aGk~ 93 (271)
T PRK13302 60 PLDQLAT---HADIVVEAAPASVLRAIVEPVLAAGKK 93 (271)
T ss_pred CHHHHhc---CCCEEEECCCcHHHHHHHHHHHHcCCc
Confidence 3334422 579999999998888999999998864
No 55
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.10 E-value=0.0015 Score=63.99 Aligned_cols=89 Identities=24% Similarity=0.290 Sum_probs=59.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~ 166 (409)
|||||+|+|+||+.+++.|.... ..+++++|-|. +.+....+.+ . ++. .++ .+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~-~~~elv~v~d~-~~~~a~~~a~------------~--------~~~---~~~--~~ 54 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGR-INAELYAFYDR-NLEKAENLAS------------K--------TGA---KAC--LS 54 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCC-CCeEEEEEECC-CHHHHHHHHH------------h--------cCC---eeE--CC
Confidence 69999999999999999987642 25899888876 2222211111 0 010 111 23
Q ss_pred CCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEE
Q 015291 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (409)
Q Consensus 167 p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVI 206 (409)
.+++. .++|+|++|++...-.+.+...+++|.. |++
T Consensus 55 ~~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk~-Vvv 90 (265)
T PRK13304 55 IDELV---EDVDLVVECASVNAVEEVVPKSLENGKD-VII 90 (265)
T ss_pred HHHHh---cCCCEEEEcCChHHHHHHHHHHHHcCCC-EEE
Confidence 33333 1689999999988888889999998865 444
No 56
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.06 E-value=0.00093 Score=58.15 Aligned_cols=92 Identities=21% Similarity=0.216 Sum_probs=53.1
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecC
Q 015291 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (409)
Q Consensus 87 ikVaInGf-GrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~ 165 (409)
|||+|+|+ ||+||.+++.+.++ ++++|+++-+...-++. .-|. |.+.+ .....+.+. .
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~--~~~~lv~~v~~~~~~~~----g~d~--g~~~~-----------~~~~~~~v~--~ 59 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES--PGFELVGAVDRKPSAKV----GKDV--GELAG-----------IGPLGVPVT--D 59 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS--TTEEEEEEEETTTSTTT----TSBC--HHHCT-----------SST-SSBEB--S
T ss_pred CEEEEECCCCHHHHHHHHHHHhc--CCcEEEEEEecCCcccc----cchh--hhhhC-----------cCCcccccc--h
Confidence 69999997 99999999999986 45999999875221110 0011 11110 000112221 2
Q ss_pred CCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCC
Q 015291 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (409)
Q Consensus 166 ~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGak 202 (409)
+.+++- . .+|++||.|-.....+.++..++.|..
T Consensus 60 ~l~~~~-~--~~DVvIDfT~p~~~~~~~~~~~~~g~~ 93 (124)
T PF01113_consen 60 DLEELL-E--EADVVIDFTNPDAVYDNLEYALKHGVP 93 (124)
T ss_dssp -HHHHT-T--H-SEEEEES-HHHHHHHHHHHHHHT-E
T ss_pred hHHHhc-c--cCCEEEEcCChHHhHHHHHHHHhCCCC
Confidence 233221 1 389999999666666777777888774
No 57
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.98 E-value=0.0013 Score=64.07 Aligned_cols=87 Identities=21% Similarity=0.253 Sum_probs=56.9
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecC
Q 015291 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (409)
Q Consensus 87 ikVaInGf-GrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~ 165 (409)
|||+|+|+ |++|+.+++.+.+. ++++++++-|.. .+.... + ....+.+ ..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~--~~~elvav~d~~-~~~~~~----------~--------------~~~~i~~--~~ 52 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA--EDLELVAAVDRP-GSPLVG----------Q--------------GALGVAI--TD 52 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecC-Cccccc----------c--------------CCCCccc--cC
Confidence 79999995 99999999998765 459999987751 111100 0 0001111 12
Q ss_pred CCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEE
Q 015291 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (409)
Q Consensus 166 ~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVI 206 (409)
+.+.+- . ++|+|+++|......+.+...+++|.. ||+
T Consensus 53 dl~~ll-~--~~DvVid~t~p~~~~~~~~~al~~G~~-vvi 89 (257)
T PRK00048 53 DLEAVL-A--DADVLIDFTTPEATLENLEFALEHGKP-LVI 89 (257)
T ss_pred CHHHhc-c--CCCEEEECCCHHHHHHHHHHHHHcCCC-EEE
Confidence 333321 1 589999999877778889999999975 444
No 58
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.88 E-value=0.0013 Score=68.83 Aligned_cols=93 Identities=27% Similarity=0.402 Sum_probs=56.4
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC-------CCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeE
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKL 158 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~-------~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~ 158 (409)
++||||.|+|.||+.++++|.++. ..+++|++|-+. +.+.. .-+ . ..+
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~-~~~~~-~~~-------------~--------~~~-- 57 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVR-DLEKD-RGV-------------D--------LPG-- 57 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeC-Chhhc-cCC-------------C--------Ccc--
Confidence 689999999999999999987642 125889888764 11100 000 0 000
Q ss_pred EEEEecCCCCCCCccccCccEEEeCCCCC-CChhhHHHHHHcCCCEEEEeC
Q 015291 159 IKVVSNRDPLQLPWAELGIDIVIEGTGVF-VDGPGAGKHIQAGAKKVIITA 208 (409)
Q Consensus 159 I~v~~~~~p~~l~W~~~gvDiVle~TG~f-~s~e~a~~hl~aGakkVVISa 208 (409)
..++ .+++++ ..+.++|+|+||||.. ...++....+++|. -|+++
T Consensus 58 ~~~~--~d~~~l-l~d~~iDvVve~tg~~~~~~~~~~~aL~~Gk--hVVta 103 (426)
T PRK06349 58 ILLT--TDPEEL-VNDPDIDIVVELMGGIEPARELILKALEAGK--HVVTA 103 (426)
T ss_pred ccee--CCHHHH-hhCCCCCEEEECCCCchHHHHHHHHHHHCCC--eEEEc
Confidence 1111 222222 1234799999999764 34677778899885 34553
No 59
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.84 E-value=0.0027 Score=64.57 Aligned_cols=38 Identities=26% Similarity=0.506 Sum_probs=31.0
Q ss_pred cceeeEEEEcCChhHHHHHHHHHhCCC-------CCceEEEEeCC
Q 015291 84 VAKLKVAINGFGRIGRNFLRCWHGRKD-------SPLDVVVVNDS 121 (409)
Q Consensus 84 ~m~ikVaInGfGrIGr~vlr~l~~~~~-------~~~~vVaInd~ 121 (409)
+|++||+|.|||.||+.++|+|.+++. -+++|++|-+.
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~ 45 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADR 45 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEec
Confidence 367999999999999999999987532 25788888764
No 60
>PRK08374 homoserine dehydrogenase; Provisional
Probab=96.78 E-value=0.0028 Score=64.43 Aligned_cols=108 Identities=23% Similarity=0.349 Sum_probs=59.9
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCC-------CCCceEEEEeCCCC----hhh--hhhhhcccccccccCceEEEecCCe
Q 015291 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDSGG----VKN--ASHLLKYDSLLGTFKADVKIVDNET 151 (409)
Q Consensus 85 m~ikVaInGfGrIGr~vlr~l~~~~-------~~~~~vVaInd~~~----~~~--~a~Ll~yDS~~G~f~~~v~~~~~~~ 151 (409)
|++||+|.|||.||+.++++|.++. .-+++|++|.|.-. ++- +..+++|-..+|.. ..
T Consensus 1 ~~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~---------~~ 71 (336)
T PRK08374 1 MEVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKL---------SN 71 (336)
T ss_pred CeeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCch---------hh
Confidence 6799999999999999999988631 11488999987411 000 01111110000000 00
Q ss_pred EEECCeEEEEEecCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeC
Q 015291 152 ISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (409)
Q Consensus 152 l~v~gk~I~v~~~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISa 208 (409)
+.-+ ... ...+++++ +.+..+|+|+|+|+.....+...+.++.|.. ||++
T Consensus 72 ~~~~---~~~-~~~~~~el-l~~~~~DVvVd~t~~~~a~~~~~~al~~G~~--VVta 121 (336)
T PRK08374 72 WGND---YEV-YNFSPEEI-VEEIDADIVVDVTNDKNAHEWHLEALKEGKS--VVTS 121 (336)
T ss_pred cccc---ccc-cCCCHHHH-HhcCCCCEEEECCCcHHHHHHHHHHHhhCCc--EEEC
Confidence 0000 000 00012221 2335789999999887777777888888883 4443
No 61
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.76 E-value=0.0036 Score=63.47 Aligned_cols=35 Identities=37% Similarity=0.685 Sum_probs=28.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC-----CCCceEEEEeCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRK-----DSPLDVVVVNDS 121 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~-----~~~~~vVaInd~ 121 (409)
|||+|.|||.||+.+++.|.++. ..+++||+|.|.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds 40 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS 40 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence 48999999999999999998741 135899999875
No 62
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.66 E-value=0.0053 Score=51.69 Aligned_cols=93 Identities=32% Similarity=0.423 Sum_probs=64.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhh-cccccccccCceEEEecCCeEEECCeEEEEEecC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll-~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~ 165 (409)
|||||+|+|.+|+..++.+.... +++++++|-|+ +.+...... +|.. . .+ .
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~-~~~~v~~v~d~-~~~~~~~~~~~~~~-------~-----------------~~--~ 52 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSS-PDFEVVAVCDP-DPERAEAFAEKYGI-------P-----------------VY--T 52 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTT-TTEEEEEEECS-SHHHHHHHHHHTTS-------E-----------------EE--S
T ss_pred CEEEEECCcHHHHHHHHHHHhcC-CCcEEEEEEeC-CHHHHHHHHHHhcc-------c-----------------ch--h
Confidence 69999999999999999988763 56999999987 332221111 1110 1 11 1
Q ss_pred CCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 015291 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (409)
Q Consensus 166 ~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISap 209 (409)
+.+++ +.+.++|+|+-||+...-.+.+...+++|. .|++--|
T Consensus 53 ~~~~l-l~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP 94 (120)
T PF01408_consen 53 DLEEL-LADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKP 94 (120)
T ss_dssp SHHHH-HHHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESS
T ss_pred HHHHH-HHhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcC
Confidence 22222 122379999999999888899999999998 5666555
No 63
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=96.63 E-value=0.0082 Score=59.15 Aligned_cols=97 Identities=24% Similarity=0.309 Sum_probs=60.7
Q ss_pred ceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEe
Q 015291 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (409)
Q Consensus 85 m~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~ 163 (409)
|+|||+|+| .||.||.+++++.+. +++++++.=+..+.. ..|+-.+++ +-++-..+.+..
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~--~~~~L~aa~~~~~~~----------~~g~d~ge~-------~g~~~~gv~v~~ 61 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEA--PDLELVAAFDRPGSL----------SLGSDAGEL-------AGLGLLGVPVTD 61 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcC--CCceEEEEEecCCcc----------ccccchhhh-------ccccccCceeec
Confidence 358999999 699999999999876 468988776642211 111111111 111111233321
Q ss_pred cCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEE
Q 015291 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (409)
Q Consensus 164 ~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVI 206 (409)
+ +.-...+.|++||=|-...+.+.++..++.|.+ .||
T Consensus 62 --~---~~~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~-lVI 98 (266)
T COG0289 62 --D---LLLVKADADVLIDFTTPEATLENLEFALEHGKP-LVI 98 (266)
T ss_pred --c---hhhcccCCCEEEECCCchhhHHHHHHHHHcCCC-eEE
Confidence 1 112233789999999888888999999999864 455
No 64
>PRK06813 homoserine dehydrogenase; Validated
Probab=96.59 E-value=0.0032 Score=64.43 Aligned_cols=37 Identities=30% Similarity=0.528 Sum_probs=29.7
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCC-------CCCceEEEEeCC
Q 015291 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDS 121 (409)
Q Consensus 85 m~ikVaInGfGrIGr~vlr~l~~~~-------~~~~~vVaInd~ 121 (409)
|+++|+|.|||.||+.++++|.++. .-++.|++|-+.
T Consensus 1 ~~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~ 44 (346)
T PRK06813 1 MKIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGR 44 (346)
T ss_pred CeeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEec
Confidence 5689999999999999999997542 125788888764
No 65
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.14 E-value=0.018 Score=55.08 Aligned_cols=73 Identities=26% Similarity=0.302 Sum_probs=52.1
Q ss_pred CccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEecCCcc-ccCcCCCcEEecCCcchhhhHHHHHHHHh
Q 015291 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEK-DYDHEVANIVSNASCTTNCLAPFVKVMDE 254 (409)
Q Consensus 176 gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~~~dvP~vV~gVN~~-~~~~~~~~IISnaSCTTn~Lapvlk~L~~ 254 (409)
++|+|||+|.....++.+++..++|.+-+-++-..- -|-+||-+|.+ .++....+.|+ |-..+-.|++....+
T Consensus 71 di~lvfdatsa~~h~~~a~~~ae~gi~~idltpaai---gp~vvp~~n~~eh~~a~nvnmvt---cggqatipiv~avsr 144 (310)
T COG4569 71 DIDLVFDATSAGAHVKNAAALAEAGIRLIDLTPAAI---GPYVVPVVNLEEHVDALNVNMVT---CGGQATIPIVAAVSR 144 (310)
T ss_pred CcceEEeccccchhhcchHhHHhcCCceeecchhcc---CCeeccccchHHhcCCCCcceEe---ecCcccchhhhhhhh
Confidence 789999999999999999999999996544443222 38899999987 45543356774 555555666554443
No 66
>PRK11579 putative oxidoreductase; Provisional
Probab=96.12 E-value=0.02 Score=57.72 Aligned_cols=92 Identities=23% Similarity=0.413 Sum_probs=60.4
Q ss_pred eeeEEEEcCChhHHH-HHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEec
Q 015291 86 KLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (409)
Q Consensus 86 ~ikVaInGfGrIGr~-vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~ 164 (409)
++||||+|+|.||+. .++++... ++++|+||-|. +.+..+ + .|. + +.++
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~--~~~~l~av~d~-~~~~~~---~------~~~--------------~--~~~~-- 53 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGT--PGLELAAVSSS-DATKVK---A------DWP--------------T--VTVV-- 53 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhC--CCCEEEEEECC-CHHHHH---h------hCC--------------C--Ccee--
Confidence 589999999999985 46766654 45999999886 332221 0 000 0 0111
Q ss_pred CCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 015291 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (409)
Q Consensus 165 ~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISap 209 (409)
.+.+++ ..+.++|+|+-||+...-.+.+...+++|. .|++--|
T Consensus 54 ~~~~el-l~~~~vD~V~I~tp~~~H~~~~~~al~aGk-hVl~EKP 96 (346)
T PRK11579 54 SEPQHL-FNDPNIDLIVIPTPNDTHFPLAKAALEAGK-HVVVDKP 96 (346)
T ss_pred CCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCC-eEEEeCC
Confidence 122222 112379999999999999999999999985 4666444
No 67
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=95.95 E-value=0.027 Score=58.48 Aligned_cols=111 Identities=19% Similarity=0.236 Sum_probs=63.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhh-cccccccccCceEEEecCC---eE--EECCeEE
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDNE---TI--SVDGKLI 159 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll-~yDS~~G~f~~~v~~~~~~---~l--~v~gk~I 159 (409)
.||+|.| +|-||+..|+++...+ ..|+|+++.--.+.+.++.+. +|...+ +-+.++. .| .+.+..+
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p-~~f~VvaLaa~~n~~~l~~q~~~f~p~~------v~i~~~~~~~~l~~~l~~~~~ 74 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNP-DRFRVVALSAGKNVELLAEQAREFRPKY------VVVADEEAAKELKEALAAAGI 74 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCc-cccEEEEEEcCCCHHHHHHHHHHhCCCE------EEEcCHHHHHHHHHhhccCCc
Confidence 3899999 9999999999987653 369999997322444443333 222210 1110000 00 0011112
Q ss_pred EEEecCC-CCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEE
Q 015291 160 KVVSNRD-PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (409)
Q Consensus 160 ~v~~~~~-p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVI 206 (409)
+++...+ +.++ -...++|+|+.+.+.+...+..-..+++|. +|.+
T Consensus 75 ~v~~G~~~~~~l-~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK-~VaL 120 (385)
T PRK05447 75 EVLAGEEGLCEL-AALPEADVVVAAIVGAAGLLPTLAAIRAGK-RIAL 120 (385)
T ss_pred eEEEChhHHHHH-hcCCCCCEEEEeCcCcccHHHHHHHHHCCC-cEEE
Confidence 3333221 2111 111269999999999988888888999984 4544
No 68
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=95.73 E-value=0.11 Score=50.06 Aligned_cols=35 Identities=43% Similarity=0.638 Sum_probs=30.7
Q ss_pred cceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 015291 84 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 84 ~m~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~ 121 (409)
.+.+||+|-|||.||+.+++.|.+.. ..||+|.|.
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L~~~g---~~vv~v~D~ 63 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEAG---AKVVAVSDS 63 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECC
Confidence 34679999999999999999998764 899999986
No 69
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.58 E-value=0.042 Score=58.15 Aligned_cols=99 Identities=19% Similarity=0.269 Sum_probs=62.6
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC---------CChhhhhhhhcccccc-cccCceEEEecCCeEEEC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLLKYDSLL-GTFKADVKIVDNETISVD 155 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~---------~~~~~~a~Ll~yDS~~-G~f~~~v~~~~~~~l~v~ 155 (409)
..||+|-|||.||+.+++.|.+.. ..||+|.|. .+++ .|++|-..+ |.+..- . +. .+
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~~~G---akVVavsDs~G~iyn~~GLD~~---~L~~~k~~~~~~l~~~-~---~~---~~ 298 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQQLG---AKVVTCSDSSGYVYDEEGIDLE---KLKEIKEVRRGRISEY-A---EE---FG 298 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcCCceEECCCCCCHH---HHHHHHHhcCCchhhh-h---hh---cC
Confidence 469999999999999999998764 799999883 1332 334332211 221100 0 00 01
Q ss_pred CeEEEEEecCCCCCCCccccCccEEEeCC-CCCCChhhHHHHHHcCCCEEEE
Q 015291 156 GKLIKVVSNRDPLQLPWAELGIDIVIEGT-GVFVDGPGAGKHIQAGAKKVII 206 (409)
Q Consensus 156 gk~I~v~~~~~p~~l~W~~~gvDiVle~T-G~f~s~e~a~~hl~aGakkVVI 206 (409)
.+. + +++. .|. .++|+.+.|+ +.-++.+.+.++.+.+|| +|+
T Consensus 299 ~~~--i----~~~~-i~~-~d~DVliPaAl~n~It~~~a~~i~~~~ak-iIv 341 (445)
T PRK09414 299 AEY--L----EGGS-PWS-VPCDIALPCATQNELDEEDAKTLIANGVK-AVA 341 (445)
T ss_pred Cee--c----CCcc-ccc-cCCcEEEecCCcCcCCHHHHHHHHHcCCe-EEE
Confidence 011 1 2222 253 5799999998 778888999999877884 455
No 70
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.56 E-value=0.0017 Score=55.31 Aligned_cols=87 Identities=29% Similarity=0.400 Sum_probs=48.8
Q ss_pred cCChhHHHHHHHHHhCCCC-CceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCCCCC-C
Q 015291 93 GFGRIGRNFLRCWHGRKDS-PLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQ-L 170 (409)
Q Consensus 93 GfGrIGr~vlr~l~~~~~~-~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~p~~-l 170 (409)
|||.||+.+++.|.++... +++|++|-+... ++..+. ...+. +..+ . .++++ +
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~------~~~~~~-~~~~~-------~~~~-~----------~~~~~~~ 55 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSM------LISKDW-AASFP-------DEAF-T----------TDLEELI 55 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSE------EEETTH-HHHHT-------HSCE-E----------SSHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCc------hhhhhh-hhhcc-------cccc-c----------CCHHHHh
Confidence 8999999999999876421 589999987520 000000 00000 0000 1 11111 1
Q ss_pred CccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeC
Q 015291 171 PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (409)
Q Consensus 171 ~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISa 208 (409)
.| .++|+|+|||+.....+..+..++.|. =||++
T Consensus 56 ~~--~~~dvvVE~t~~~~~~~~~~~~L~~G~--~VVt~ 89 (117)
T PF03447_consen 56 DD--PDIDVVVECTSSEAVAEYYEKALERGK--HVVTA 89 (117)
T ss_dssp TH--TT-SEEEE-SSCHHHHHHHHHHHHTTC--EEEES
T ss_pred cC--cCCCEEEECCCchHHHHHHHHHHHCCC--eEEEE
Confidence 11 168999999998877788889999988 45554
No 71
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=95.51 E-value=0.21 Score=52.87 Aligned_cols=111 Identities=15% Similarity=0.196 Sum_probs=65.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhh-cccccccccCceEEEecC-------CeEEECCe
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDN-------ETISVDGK 157 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll-~yDS~~G~f~~~v~~~~~-------~~l~v~gk 157 (409)
.||+|.| +|-||...|+++..++ .+|+|+++..-.+.+.++... +|... -+.+.++ ..| .|.
T Consensus 58 KkI~ILGSTGSIGtqtLdVI~~~p-d~f~vvaLaag~Ni~lL~~q~~~f~p~------~v~v~d~~~~~~l~~~l--~~~ 128 (454)
T PLN02696 58 KPISLLGSTGSIGTQTLDIVAENP-DKFKVVALAAGSNVTLLADQVRKFKPK------LVAVRNESLVDELKEAL--ADL 128 (454)
T ss_pred cEEEEecCCcHhhHHHHHHHHhCc-cccEEEEEECCCCHHHHHHHHHHhCCC------EEEEcCHHHHHHHHHhh--cCC
Confidence 5899999 8999999999998764 359999997655665555433 22221 1111000 001 110
Q ss_pred --EEEEEec-CCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeC
Q 015291 158 --LIKVVSN-RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (409)
Q Consensus 158 --~I~v~~~-~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISa 208 (409)
.++++.. ....++- ...++|+|+.+.+.+......-..+++| |+|.+.+
T Consensus 129 ~~~~~vl~G~egl~~la-~~~evDiVV~AIvG~aGL~pTl~AIkaG-K~VALAN 180 (454)
T PLN02696 129 DDKPEIIPGEEGIVEVA-RHPEAVTVVTGIVGCAGLKPTVAAIEAG-KDIALAN 180 (454)
T ss_pred CCCcEEEECHHHHHHHH-cCCCCCEEEEeCccccchHHHHHHHHCC-CcEEEec
Confidence 1233321 1111111 1126899999998887777667788898 5555543
No 72
>PLN02775 Probable dihydrodipicolinate reductase
Probab=95.36 E-value=0.042 Score=54.93 Aligned_cols=96 Identities=20% Similarity=0.171 Sum_probs=59.6
Q ss_pred cceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEE
Q 015291 84 VAKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (409)
Q Consensus 84 ~m~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~ 162 (409)
.+.+||.||| .|+.||.+++++.. + +|++|+.-|+... | ++-.+.+.|..+.+.
T Consensus 9 ~~~i~V~V~Ga~G~MG~~~~~av~~-~--~~~Lv~~~~~~~~-------------~---------~~~~~~~~g~~v~~~ 63 (286)
T PLN02775 9 GSAIPIMVNGCTGKMGHAVAEAAVS-A--GLQLVPVSFTGPA-------------G---------VGVTVEVCGVEVRLV 63 (286)
T ss_pred CCCCeEEEECCCChHHHHHHHHHhc-C--CCEEEEEeccccc-------------c---------ccccceeccceeeee
Confidence 3458999999 89999999999986 3 4999987664110 0 001122444455664
Q ss_pred ecCCCCCCC--ccccCcc-EEEeCCCCCCChhhHHHHHHcCCCEE
Q 015291 163 SNRDPLQLP--WAELGID-IVIEGTGVFVDGPGAGKHIQAGAKKV 204 (409)
Q Consensus 163 ~~~~p~~l~--W~~~gvD-iVle~TG~f~s~e~a~~hl~aGakkV 204 (409)
...|.+..- -+....| ++||=|-.....+.+...++.|..-|
T Consensus 64 ~~~dl~~~l~~~~~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~V 108 (286)
T PLN02775 64 GPSEREAVLSSVKAEYPNLIVVDYTLPDAVNDNAELYCKNGLPFV 108 (286)
T ss_pred cCccHHHHHHHhhccCCCEEEEECCChHHHHHHHHHHHHCCCCEE
Confidence 222222211 0111468 88987777777777888888888643
No 73
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=94.96 E-value=0.23 Score=47.55 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=30.0
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 015291 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 85 m~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~ 121 (409)
+.+||+|-|||.||+.+++.|.++. ..+|+|.|.
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G---~~vV~vsD~ 55 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEG---GKVLAVSDP 55 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC---CEEEEEEcC
Confidence 3579999999999999999999864 689999996
No 74
>PLN02700 homoserine dehydrogenase family protein
Probab=94.86 E-value=0.052 Score=56.26 Aligned_cols=37 Identities=35% Similarity=0.480 Sum_probs=29.6
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCC------CCCceEEEEeCC
Q 015291 85 AKLKVAINGFGRIGRNFLRCWHGRK------DSPLDVVVVNDS 121 (409)
Q Consensus 85 m~ikVaInGfGrIGr~vlr~l~~~~------~~~~~vVaInd~ 121 (409)
|+++|+|.|+|.||+.+++.+..+. .-++.|++|.++
T Consensus 2 ~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s 44 (377)
T PLN02700 2 KKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDS 44 (377)
T ss_pred cEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECC
Confidence 4789999999999999999987542 124788899774
No 75
>PRK10206 putative oxidoreductase; Provisional
Probab=94.84 E-value=0.056 Score=54.82 Aligned_cols=94 Identities=21% Similarity=0.258 Sum_probs=59.1
Q ss_pred eeeEEEEcCChhHHH-HHHHHHhCCCCCceEEEEeCCCChhhhhhhh-cccccccccCceEEEecCCeEEECCeEEEEEe
Q 015291 86 KLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (409)
Q Consensus 86 ~ikVaInGfGrIGr~-vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll-~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~ 163 (409)
++||||+|+|+|++. .++.+.... +.++|+||-|.. .+.. ... +| ++ +.++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~-~~~~l~av~d~~-~~~~-~~~~~~---------------------~~--~~~~- 53 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRK-DSWHVAHIFRRH-AKPE-EQAPIY---------------------SH--IHFT- 53 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCC-CCEEEEEEEcCC-hhHH-HHHHhc---------------------CC--Cccc-
Confidence 379999999998854 466654332 459999999862 2211 111 11 11 0111
Q ss_pred cCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 015291 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (409)
Q Consensus 164 ~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISap 209 (409)
.+.+++ ..+.++|+|+-||....-.+.+.+.+++| |.|++--|
T Consensus 54 -~~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aG-khVl~EKP 96 (344)
T PRK10206 54 -SDLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLVEKP 96 (344)
T ss_pred -CCHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcC-CcEEEecC
Confidence 122222 12237899999999999999999999999 45666444
No 76
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=94.36 E-value=0.19 Score=49.57 Aligned_cols=104 Identities=18% Similarity=0.160 Sum_probs=64.6
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC---------CChhhhhhhhcccccccc-cCceEEEecCCeEEEC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLLKYDSLLGT-FKADVKIVDNETISVD 155 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~---------~~~~~~a~Ll~yDS~~G~-f~~~v~~~~~~~l~v~ 155 (409)
..||+|-|||.||+.+++.|.+.. ..||+|.|. .+++.+..|++++..++. ...- . ..+.
T Consensus 38 g~~vaIqGfGnVG~~~a~~L~e~G---akvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~-~------~~~~ 107 (254)
T cd05313 38 GKRVAISGSGNVAQYAAEKLLELG---AKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEY-A------KKYG 107 (254)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHH-h------hcCC
Confidence 469999999999999999999864 799999884 234445445554432221 0000 0 0011
Q ss_pred CeEEEEEecCCCCCCCccccCccEEEeCC-CCCCChhhHHHHHHcCCCEEEEe
Q 015291 156 GKLIKVVSNRDPLQLPWAELGIDIVIEGT-GVFVDGPGAGKHIQAGAKKVIIT 207 (409)
Q Consensus 156 gk~I~v~~~~~p~~l~W~~~gvDiVle~T-G~f~s~e~a~~hl~aGakkVVIS 207 (409)
+- +.. +++++ |. ..+||.+=|+ +.-++.+.+++-.+.+|| +|+-
T Consensus 108 ~a--~~~---~~~~~-~~-~~~DIliPcAl~~~I~~~na~~i~~~~ak-~I~E 152 (254)
T cd05313 108 TA--KYF---EGKKP-WE-VPCDIAFPCATQNEVDAEDAKLLVKNGCK-YVAE 152 (254)
T ss_pred CC--EEe---CCcch-hc-CCCcEEEeccccccCCHHHHHHHHHcCCE-EEEe
Confidence 11 111 23332 53 5799988876 778888888876666774 4554
No 77
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=94.23 E-value=0.18 Score=49.94 Aligned_cols=96 Identities=25% Similarity=0.282 Sum_probs=60.7
Q ss_pred ceeeEEEEcCChhHH-HHHHHHHhCCCCCceEEEEeCCCChhhhhhhh-cccccccccCceEEEecCCeEEECCeEEEEE
Q 015291 85 AKLKVAINGFGRIGR-NFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (409)
Q Consensus 85 m~ikVaInGfGrIGr-~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll-~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~ 162 (409)
+++||||+|+|.|++ ..+..+...+.. +++++|-|+ +.+.+..+- +|.- . ..+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~-~~~vav~d~-~~~~a~~~a~~~~~-------~----------------~~~ 56 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGG-LELVAVVDR-DPERAEAFAEEFGI-------A----------------KAY 56 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCc-eEEEEEecC-CHHHHHHHHHHcCC-------C----------------ccc
Confidence 579999999997765 577887765311 799999876 333322221 1110 0 011
Q ss_pred ecCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 015291 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (409)
Q Consensus 163 ~~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISap 209 (409)
.+.+++ ..+.++|+|+=||....-.+.+.+.|++|. -|++-=|
T Consensus 57 --~~~~~l-l~~~~iD~V~Iatp~~~H~e~~~~AL~aGk-hVl~EKP 99 (342)
T COG0673 57 --TDLEEL-LADPDIDAVYIATPNALHAELALAALEAGK-HVLCEKP 99 (342)
T ss_pred --CCHHHH-hcCCCCCEEEEcCCChhhHHHHHHHHhcCC-EEEEcCC
Confidence 111111 111258999999999999999999999997 4666444
No 78
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.88 E-value=0.083 Score=48.50 Aligned_cols=32 Identities=34% Similarity=0.494 Sum_probs=27.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~ 121 (409)
.+|||+|||+|||.+.+.+.... ++|++.+..
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG---~~V~~~d~~ 68 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFG---MRVIGYDRS 68 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT----EEEEEESS
T ss_pred CEEEEEEEcCCcCeEeeeeecCC---ceeEEeccc
Confidence 48999999999999999998654 799888764
No 79
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=93.73 E-value=0.13 Score=48.71 Aligned_cols=96 Identities=22% Similarity=0.230 Sum_probs=59.4
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~ 165 (409)
..||+|.|+|.+|+.+++.+... ...++++++=|. +++.. +.. ++|.+ +....
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~-~~g~~ivgv~D~-d~~~~---------------------~~~--i~g~~--v~~~~ 136 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFE-KRGFKIVAAFDV-DPEKI---------------------GTK--IGGIP--VYHID 136 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcc-cCCcEEEEEEEC-Chhhc---------------------CCE--eCCeE--EcCHH
Confidence 46899999999999999864322 245899888654 21110 111 23322 21112
Q ss_pred CCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 015291 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (409)
Q Consensus 166 ~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISap 209 (409)
+..++ ..+.++|+|+.|++.....+....-+++|.+.|+...|
T Consensus 137 ~l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p 179 (213)
T PRK05472 137 ELEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAP 179 (213)
T ss_pred HHHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCc
Confidence 22222 23457999999999876666677778899876655455
No 80
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.68 E-value=0.14 Score=49.12 Aligned_cols=98 Identities=23% Similarity=0.237 Sum_probs=57.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhc--ccccccccCceEEEecCCeEEECCeEEEEEec
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK--YDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~--yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~ 164 (409)
|++.|+|.|++|+.+++.|.++. -+|+.|.+ +.+.+...++ +|. ..+..++....+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g---~~Vv~Id~--d~~~~~~~~~~~~~~--------------~~v~gd~t~~~~--- 58 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG---HNVVLIDR--DEERVEEFLADELDT--------------HVVIGDATDEDV--- 58 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC---CceEEEEc--CHHHHHHHhhhhcce--------------EEEEecCCCHHH---
Confidence 58999999999999999999875 47787865 3333322221 221 111122222222
Q ss_pred CCCCCCCccccCccEEEeCCCCCCCh-hhHHHHHH-cCCCEEEEeCCC
Q 015291 165 RDPLQLPWAELGIDIVIEGTGVFVDG-PGAGKHIQ-AGAKKVIITAPA 210 (409)
Q Consensus 165 ~~p~~l~W~~~gvDiVle~TG~f~s~-e~a~~hl~-aGakkVVISaps 210 (409)
+.+..- .++|+|+-+||..... -.+..+++ .|.+++|.-+.+
T Consensus 59 --L~~agi--~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~ 102 (225)
T COG0569 59 --LEEAGI--DDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARN 102 (225)
T ss_pred --HHhcCC--CcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 222222 2679999999985433 23444444 688887776653
No 81
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=93.06 E-value=0.058 Score=61.11 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=29.6
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCC------CCCceEEEEeCC
Q 015291 85 AKLKVAINGFGRIGRNFLRCWHGRK------DSPLDVVVVNDS 121 (409)
Q Consensus 85 m~ikVaInGfGrIGr~vlr~l~~~~------~~~~~vVaInd~ 121 (409)
+.++|+|.|||.||+.++++|.++. .-++.|++|-+.
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s 506 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANS 506 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 5799999999999999999997542 124788888763
No 82
>PLN02477 glutamate dehydrogenase
Probab=92.75 E-value=0.9 Score=47.75 Aligned_cols=95 Identities=25% Similarity=0.339 Sum_probs=56.8
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCC-------ChhhhhhhhcccccccccCceEEEecCCeEEECCeE
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-------GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKL 158 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~-------~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~ 158 (409)
..||+|-|||.||+.+++.|.+.. ..||||.|.. +++ +..|++|-..+|.+..- .+.+.
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~e~G---akVVaVsD~~G~iy~~~GLD-~~~L~~~k~~~g~l~~~----------~~a~~ 271 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIHEKG---GKIVAVSDITGAVKNENGLD-IPALRKHVAEGGGLKGF----------PGGDP 271 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC---CEEEEEECCCCeEECCCCCC-HHHHHHHHHhcCchhcc----------ccceE
Confidence 368999999999999999998864 7999999862 111 22333332222221100 01111
Q ss_pred EEEEecCCCCCCCccccCccEEEeCC-CCCCChhhHHHHHHcCCCEEEE
Q 015291 159 IKVVSNRDPLQLPWAELGIDIVIEGT-GVFVDGPGAGKHIQAGAKKVII 206 (409)
Q Consensus 159 I~v~~~~~p~~l~W~~~gvDiVle~T-G~f~s~e~a~~hl~aGakkVVI 206 (409)
+ +++++ |. ..+|+.+=|+ |.-++.+.+++ -+|| +|+
T Consensus 272 --i----~~~e~-l~-~~~DvliP~Al~~~I~~~na~~---i~ak-~I~ 308 (410)
T PLN02477 272 --I----DPDDI-LV-EPCDVLIPAALGGVINKENAAD---VKAK-FIV 308 (410)
T ss_pred --e----cCccc-ee-ccccEEeeccccccCCHhHHHH---cCCc-EEE
Confidence 1 22333 43 3789999886 77778777765 3564 344
No 83
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=92.72 E-value=0.096 Score=59.31 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=30.2
Q ss_pred cceeeEEEEcCChhHHHHHHHHHhCC-------CCCceEEEEeCC
Q 015291 84 VAKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDS 121 (409)
Q Consensus 84 ~m~ikVaInGfGrIGr~vlr~l~~~~-------~~~~~vVaInd~ 121 (409)
.+.++|+|.|||.||+.++++|.++. .-++.|++|-+.
T Consensus 456 ~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s 500 (810)
T PRK09466 456 EKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDS 500 (810)
T ss_pred CceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeC
Confidence 35799999999999999999997642 124788888654
No 84
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=92.69 E-value=0.2 Score=46.99 Aligned_cols=96 Identities=20% Similarity=0.203 Sum_probs=55.0
Q ss_pred EEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCCC
Q 015291 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (409)
Q Consensus 89 VaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~p 167 (409)
|+|.| +|.+|+.+++.|.... ++|.++-...+. ..+.-|+. .|-.+ + .. .-.++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~---~~V~~l~R~~~~-~~~~~l~~--------------~g~~v-v-----~~-d~~~~ 55 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG---FSVRALVRDPSS-DRAQQLQA--------------LGAEV-V-----EA-DYDDP 55 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---GCEEEEESSSHH-HHHHHHHH--------------TTTEE-E-----ES--TT-H
T ss_pred CEEECCccHHHHHHHHHHHhCC---CCcEEEEeccch-hhhhhhhc--------------ccceE-e-----ec-ccCCH
Confidence 78999 9999999999999843 788887654221 12222210 11111 0 00 01223
Q ss_pred CCCCccccCccEEEeCCCCCCCh------hhHHHHHHcCCCEEEEeCC
Q 015291 168 LQLPWAELGIDIVIEGTGVFVDG------PGAGKHIQAGAKKVIITAP 209 (409)
Q Consensus 168 ~~l~W~~~gvDiVle~TG~f~s~------e~a~~hl~aGakkVVISap 209 (409)
+.+.=.-.|+|.||.+++..... ..+....++|.|++|.|..
T Consensus 56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~ 103 (233)
T PF05368_consen 56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSF 103 (233)
T ss_dssp HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEE
T ss_pred HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEe
Confidence 33221113899999999976322 2344567799999887654
No 85
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=92.52 E-value=0.23 Score=47.11 Aligned_cols=96 Identities=21% Similarity=0.274 Sum_probs=63.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~ 166 (409)
.+|.|+|.|.+||.++.--+.. ...++|+++=|. +++. -|+.- ++ +.|..-.+
T Consensus 85 tnviiVG~GnlG~All~Y~f~~-~~~~~iv~~FDv-~~~~----------VG~~~-------------~~--v~V~~~d~ 137 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSK-KNGMKIVAAFDV-DPDK----------VGTKI-------------GD--VPVYDLDD 137 (211)
T ss_pred eeEEEEccChHHHHHhcCcchh-hcCceEEEEecC-CHHH----------hCccc-------------CC--eeeechHH
Confidence 6999999999999987654432 245898888765 2221 13322 22 33322222
Q ss_pred CCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCC
Q 015291 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (409)
Q Consensus 167 p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps 210 (409)
.+.+ -.+.++|+++-|.+.....+-|..-.++|.|.++=-+|.
T Consensus 138 le~~-v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtPv 180 (211)
T COG2344 138 LEKF-VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTPV 180 (211)
T ss_pred HHHH-HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccce
Confidence 2222 133489999999998888888888999999886656664
No 86
>PLN00016 RNA-binding protein; Provisional
Probab=92.44 E-value=0.46 Score=48.30 Aligned_cols=38 Identities=24% Similarity=0.200 Sum_probs=29.9
Q ss_pred cccccceeeEEEE----c-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 80 KKETVAKLKVAIN----G-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 80 ~~~~~m~ikVaIn----G-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
.....|++||.|. | +|.||+.+++.|.++. .+|.++..
T Consensus 46 ~~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G---~~V~~l~R 88 (378)
T PLN00016 46 AAAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAG---HEVTLFTR 88 (378)
T ss_pred hhcccccceEEEEeccCCCceeEhHHHHHHHHHCC---CEEEEEec
Confidence 3344556789999 8 9999999999998764 57777765
No 87
>CHL00194 ycf39 Ycf39; Provisional
Probab=92.39 E-value=0.33 Score=47.97 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=26.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|||.|.| +|.||+.+++.|.++. .+|+++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g---~~V~~l~R 32 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG---YQVRCLVR 32 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CeEEEEEc
Confidence 4899999 9999999999998764 58887764
No 88
>PRK14030 glutamate dehydrogenase; Provisional
Probab=92.23 E-value=0.82 Score=48.52 Aligned_cols=104 Identities=20% Similarity=0.256 Sum_probs=65.4
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC---------CChhhhhhhhcccccccccCceEEEecCCeEEECC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDG 156 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~---------~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~g 156 (409)
..||+|=|||.||+..++.|.+.. ..||+|.|. .+.+.+.+|++|-..+|..-.... . .+.|
T Consensus 228 g~~vaIQGfGnVG~~aA~~L~e~G---akvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~----~--~~~g 298 (445)
T PRK14030 228 GKTVAISGFGNVAWGAATKATELG---AKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYA----E--KFPG 298 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHH----h--cCCC
Confidence 458999999999999999998864 699998664 234445567665433322100000 0 1212
Q ss_pred eEEEEEecCCCCCCCccccCccEEEeCC-CCCCChhhHHHHHHcCCCEEEE
Q 015291 157 KLIKVVSNRDPLQLPWAELGIDIVIEGT-GVFVDGPGAGKHIQAGAKKVII 206 (409)
Q Consensus 157 k~I~v~~~~~p~~l~W~~~gvDiVle~T-G~f~s~e~a~~hl~aGakkVVI 206 (409)
. +.. ++++ .|. ..+||.+=|+ +.-++.+.+++-.+.+|| +|+
T Consensus 299 a--~~i---~~~~-~~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak-~V~ 341 (445)
T PRK14030 299 S--TFF---AGKK-PWE-QKVDIALPCATQNELNGEDADKLIKNGVL-CVA 341 (445)
T ss_pred C--EEc---CCcc-cee-ccccEEeeccccccCCHHHHHHHHHcCCe-EEE
Confidence 1 111 1222 264 5799988776 888899999888778885 445
No 89
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=92.19 E-value=0.36 Score=48.11 Aligned_cols=89 Identities=17% Similarity=0.162 Sum_probs=54.5
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe-CCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEec
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN-DSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaIn-d~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~ 164 (409)
+||.||| .|++||.+++++.. +++++|+.. +. +.. .++...+.|..+.+...
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~---~~~~Lv~~~~~~---~~~--------------------~~~~~~~~g~~v~v~~~ 54 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA---AGLEIVPTSFGG---EEE--------------------AENEAEVAGKEILLHGP 54 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc---CCCEEEeeEccc---ccc--------------------ccchhhhcccceeeecc
Confidence 5899999 99999999999875 359998752 11 000 01112233334555321
Q ss_pred ----CCCCCCCccccCcc-EEEeCCCCCCChhhHHHHHHcCCCE
Q 015291 165 ----RDPLQLPWAELGID-IVIEGTGVFVDGPGAGKHIQAGAKK 203 (409)
Q Consensus 165 ----~~p~~l~W~~~gvD-iVle~TG~f~s~e~a~~hl~aGakk 203 (409)
.+++.+- +...| ++||=|-.....+.+...++.|..-
T Consensus 55 ~~~~~~l~~~~--~~~~d~VvIDFT~P~~~~~n~~~~~~~gv~~ 96 (275)
T TIGR02130 55 SEREARIGEVF--AKYPELICIDYTHPSAVNDNAAFYGKHGIPF 96 (275)
T ss_pred ccccccHHHHH--hhcCCEEEEECCChHHHHHHHHHHHHCCCCE
Confidence 1222221 11267 8899887777777888888888753
No 90
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=92.00 E-value=0.53 Score=47.05 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=26.6
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 85 m~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|++||+|+|.|.||..+...|.+.. .+|..++.
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G---~~V~~~~r 33 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAG---ADVTLIGR 33 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcC---CcEEEEec
Confidence 5679999999999999999998764 46665654
No 91
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=91.77 E-value=0.77 Score=48.81 Aligned_cols=103 Identities=18% Similarity=0.257 Sum_probs=64.5
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCC---------Chhhhhhhhcccccc-cccCceEEEecCCeEEEC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG---------GVKNASHLLKYDSLL-GTFKADVKIVDNETISVD 155 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~---------~~~~~a~Ll~yDS~~-G~f~~~v~~~~~~~l~v~ 155 (409)
..||+|-|||.||+...+.|.+.. ..||+|.|.. +.+.+.+|+++-..+ |+...-. +. .-
T Consensus 237 Gk~VaVqG~GnVg~~aa~~L~e~G---akVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~----~~---~~ 306 (454)
T PTZ00079 237 GKTVVVSGSGNVAQYAVEKLLQLG---AKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYA----KH---SS 306 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhh----hc---cC
Confidence 358999999999999999998865 6999999962 244444444332211 2211000 00 00
Q ss_pred CeEEEEEecCCCCCCCccccCccEEEeCC-CCCCChhhHHHHHHcCCCEEEE
Q 015291 156 GKLIKVVSNRDPLQLPWAELGIDIVIEGT-GVFVDGPGAGKHIQAGAKKVII 206 (409)
Q Consensus 156 gk~I~v~~~~~p~~l~W~~~gvDiVle~T-G~f~s~e~a~~hl~aGakkVVI 206 (409)
| .+... +++ .|. ..+||.+=|+ +.-++.+.|..-++.||| +|+
T Consensus 307 ~--a~~~~---~~~-~~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak-~V~ 350 (454)
T PTZ00079 307 T--AKYVP---GKK-PWE-VPCDIAFPCATQNEINLEDAKLLIKNGCK-LVA 350 (454)
T ss_pred C--cEEeC---CcC-ccc-CCccEEEeccccccCCHHHHHHHHHcCCe-EEE
Confidence 1 11111 222 375 5799998876 778888999887788995 445
No 92
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=91.31 E-value=0.33 Score=50.02 Aligned_cols=34 Identities=21% Similarity=0.446 Sum_probs=29.7
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~ 121 (409)
++|||+.|.|-.|+-++...... +.|++|||.|.
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~m--~Gm~vvaisd~ 50 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIASM--PGMEVVAISDR 50 (438)
T ss_pred ceEEEEecccccchHHHHHHhhc--CCceEEEEecc
Confidence 69999999999999999777654 45999999996
No 93
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=91.17 E-value=0.25 Score=49.63 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=25.6
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
..+|||+|||+|||.+.+.+.... ++|.+.+.
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~fg---m~V~~~d~ 176 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAFG---AKVVYYST 176 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhcC---CEEEEECC
Confidence 457999999999999999986532 78877653
No 94
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=90.76 E-value=0.22 Score=44.55 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=26.1
Q ss_pred EEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCC
Q 015291 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 89 VaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~ 121 (409)
|.|.| +|.||+.+++.|.++. .+|.++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~---~~V~~~~R~ 31 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG---HEVTALVRS 31 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---SEEEEEESS
T ss_pred eEEECCCChHHHHHHHHHHHCC---CEEEEEecC
Confidence 68999 9999999999999875 788888763
No 95
>PRK06487 glycerate dehydrogenase; Provisional
Probab=90.63 E-value=0.3 Score=49.22 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=25.7
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
.-+|||+|||+|||.+.+.+.... ++|++.+.
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~fg---m~V~~~~~ 179 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAFG---MRVLIGQL 179 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCC---CEEEEECC
Confidence 348999999999999999987542 78877653
No 96
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=90.21 E-value=0.58 Score=45.84 Aligned_cols=108 Identities=19% Similarity=0.130 Sum_probs=58.9
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCC-------CC-CceEEEEeC-CCChhhhhhhhcccccccccCceEEEecCCeEEEC
Q 015291 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DS-PLDVVVVND-SGGVKNASHLLKYDSLLGTFKADVKIVDNETISVD 155 (409)
Q Consensus 85 m~ikVaInGfGrIGr~vlr~l~~~~-------~~-~~~vVaInd-~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~ 155 (409)
++.||.|+|.|-+|-.+++.|.... .+ .++|+.+.. ..+...+-.-+-+++.-|+.+.++-. ..--.++
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~--~ri~~~~ 87 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLV--NRLNQAM 87 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHH--HHHHhcc
Confidence 3579999999999999999997531 01 135544432 22333333323234456776655432 1111122
Q ss_pred CeEEEEEecC-CCCCCCccccCccEEEeCCCCCCChhhHHHHH
Q 015291 156 GKLIKVVSNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHI 197 (409)
Q Consensus 156 gk~I~v~~~~-~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl 197 (409)
+..++...++ +++++ + .+.|+||+|+..+.+|...-..+
T Consensus 88 ~~~i~a~~~~~~~~~~-~--~~~DiVi~avDn~~aR~~l~~~~ 127 (244)
T TIGR03736 88 GTDWTAHPERVERSST-L--HRPDIVIGCVDNRAARLAILRAF 127 (244)
T ss_pred CceEEEEEeeeCchhh-h--cCCCEEEECCCCHHHHHHHHHHH
Confidence 4334433321 12222 2 26899999999888876554333
No 97
>PRK06932 glycerate dehydrogenase; Provisional
Probab=89.99 E-value=0.37 Score=48.60 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=24.7
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
..+|||+|||+|||.+.+.+.... ++|++.+
T Consensus 147 gktvgIiG~G~IG~~va~~l~~fg---~~V~~~~ 177 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQALG---MKVLYAE 177 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCC---CEEEEEC
Confidence 358999999999999999886432 6776654
No 98
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=89.90 E-value=1.1 Score=38.61 Aligned_cols=83 Identities=19% Similarity=0.176 Sum_probs=54.6
Q ss_pred eEEEEc----CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEe
Q 015291 88 KVAING----FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (409)
Q Consensus 88 kVaInG----fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~ 163 (409)
+|||+| -+..|+.+++.|.++. ++|..||.. ++. +.|.+ ++
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G---~~v~~Vnp~-----------~~~------------------i~G~~--~y- 46 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAG---YEVYPVNPK-----------GGE------------------ILGIK--CY- 46 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT----EEEEESTT-----------CSE------------------ETTEE---B-
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCC---CEEEEECCC-----------ceE------------------ECcEE--ee-
Confidence 699999 4999999999998853 699999852 111 33322 22
Q ss_pred cCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 015291 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (409)
Q Consensus 164 ~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISap 209 (409)
.+.+++| ..+|+++-++......+..+...+.|++.|++...
T Consensus 47 -~sl~e~p---~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 47 -PSLAEIP---EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp -SSGGGCS---ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred -ccccCCC---CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 2233322 37899999999888888888888899999888553
No 99
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=89.85 E-value=0.66 Score=37.52 Aligned_cols=43 Identities=26% Similarity=0.421 Sum_probs=29.8
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhh
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL 131 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll 131 (409)
||||.|+|.+|..+++.|.+.....-+|..+.+. +++.+.++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r-~~~~~~~~~ 43 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR-SPEKAAELA 43 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES-SHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC-cHHHHHHHH
Confidence 7999999999999999998774233566655343 445554443
No 100
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=89.84 E-value=1.2 Score=42.27 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=27.1
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|||||.| .|++|..++.-+..|. -+|+||-.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG---HeVTAivR 32 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG---HEVTAIVR 32 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC---CeeEEEEe
Confidence 5899999 9999999998888876 58888865
No 101
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=89.45 E-value=0.31 Score=43.03 Aligned_cols=33 Identities=33% Similarity=0.485 Sum_probs=26.9
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~ 121 (409)
.+||+|+|.|++|+.+.++|.+.. .+|++|-..
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag---~~v~~v~sr 42 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAG---HEVVGVYSR 42 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTT---SEEEEESSC
T ss_pred ccEEEEECCCHHHHHHHHHHHHCC---CeEEEEEeC
Confidence 479999999999999999998764 688888543
No 102
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=89.29 E-value=1.2 Score=43.03 Aligned_cols=30 Identities=13% Similarity=0.330 Sum_probs=24.5
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
||.|.| +|.||+.+++.|.++. .+|.++..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g---~~V~~~~R 31 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS---VPFLVASR 31 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC---CcEEEEeC
Confidence 588999 9999999999998764 57766654
No 103
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=89.09 E-value=1.6 Score=41.13 Aligned_cols=29 Identities=21% Similarity=0.434 Sum_probs=24.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaI 118 (409)
++|+|.|||++|+.+.+.|.+.. .+|+++
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G---~~Vvv~ 57 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEG---AKLIVA 57 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEE
Confidence 58999999999999999998764 588744
No 104
>PRK14031 glutamate dehydrogenase; Provisional
Probab=88.98 E-value=1.5 Score=46.64 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=61.6
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC---------CChhhhhhhhccccc-ccccCceEEEecCCeEEEC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLLKYDSL-LGTFKADVKIVDNETISVD 155 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~---------~~~~~~a~Ll~yDS~-~G~f~~~v~~~~~~~l~v~ 155 (409)
..||+|-|||.||...++.|.+.. -.||+|.|. .+++.+.|+.++... +++...- .+. .
T Consensus 228 g~rVaVQGfGNVG~~aA~~L~e~G---AkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~----~~~---~- 296 (444)
T PRK14031 228 GKVCLVSGSGNVAQYTAEKVLELG---GKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREY----AEK---Y- 296 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhh----Hhh---c-
Confidence 358999999999999999999864 699999983 134444333332211 1111100 000 0
Q ss_pred CeEEEEEecCCCCCCCccccCccEEEeCC-CCCCChhhHHHHHHcCCCEEEEe
Q 015291 156 GKLIKVVSNRDPLQLPWAELGIDIVIEGT-GVFVDGPGAGKHIQAGAKKVIIT 207 (409)
Q Consensus 156 gk~I~v~~~~~p~~l~W~~~gvDiVle~T-G~f~s~e~a~~hl~aGakkVVIS 207 (409)
| .... ++++ .|. ..+|+.+=|+ +.-++.+.+++-...|++ +|+.
T Consensus 297 g--a~~i---~~d~-~~~-~~cDIliPaAl~n~I~~~na~~l~a~g~~-~V~E 341 (444)
T PRK14031 297 G--CKYV---EGAR-PWG-EKGDIALPSATQNELNGDDARQLVANGVI-AVSE 341 (444)
T ss_pred C--CEEc---CCcc-ccc-CCCcEEeecccccccCHHHHHHHHhcCCe-EEEC
Confidence 1 1121 1222 364 4789988876 777888888887666773 4443
No 105
>PLN02928 oxidoreductase family protein
Probab=88.95 E-value=0.49 Score=48.37 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=27.1
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~ 121 (409)
..+|||+|||+|||.+.+.|.... ++|++.+..
T Consensus 159 gktvGIiG~G~IG~~vA~~l~afG---~~V~~~dr~ 191 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPFG---VKLLATRRS 191 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCC---CEEEEECCC
Confidence 358999999999999999987543 788887653
No 106
>PRK07574 formate dehydrogenase; Provisional
Probab=88.73 E-value=0.51 Score=49.12 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=25.8
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
..+|||+|+|+|||.+++.|.... ++|.+.+.
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~fG---~~V~~~dr 223 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPFD---VKLHYTDR 223 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CEEEEECC
Confidence 357999999999999999987543 78777654
No 107
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=88.58 E-value=0.55 Score=47.74 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=26.0
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
..+|||+|||+||+.+.+.+.... ++|++.+-
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afg---m~v~~~d~ 173 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFG---MKVIGYDP 173 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CeEEEECC
Confidence 458999999999999999887653 78777654
No 108
>PRK06436 glycerate dehydrogenase; Provisional
Probab=88.44 E-value=0.58 Score=47.06 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=25.8
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
..+|||+|+|+||+.+.+.+.... ++|++.+.
T Consensus 122 gktvgIiG~G~IG~~vA~~l~afG---~~V~~~~r 153 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAFG---MNIYAYTR 153 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC---CEEEEECC
Confidence 358999999999999999876432 78887764
No 109
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=88.37 E-value=0.57 Score=47.50 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=24.1
Q ss_pred eeeEEEEcCChhHHHHHHHHH-hCCCCCceEEEEe
Q 015291 86 KLKVAINGFGRIGRNFLRCWH-GRKDSPLDVVVVN 119 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~-~~~~~~~~vVaIn 119 (409)
..+|||+|||+|||.+.+.+. .. .++|++.+
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~f---gm~V~~~~ 176 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGF---NMPILYNA 176 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcC---CCEEEEEC
Confidence 458999999999999999886 33 26776543
No 110
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=88.35 E-value=0.4 Score=48.95 Aligned_cols=95 Identities=31% Similarity=0.485 Sum_probs=51.5
Q ss_pred EEEEcCChhHHHHHHHHHhCCCCCc-eEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCCC
Q 015291 89 VAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (409)
Q Consensus 89 VaInGfGrIGr~vlr~l~~~~~~~~-~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~p 167 (409)
|.|.|.|.||+.+++.|.++. ++ +|+.. +. +.+.+..+.+. .. +..+.. +.+ ...|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~--~~~~v~va-~r-~~~~~~~~~~~--~~-----------~~~~~~----~~~-d~~~~ 58 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG--PFEEVTVA-DR-NPEKAERLAEK--LL-----------GDRVEA----VQV-DVNDP 58 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT--CE-EEEEE-ES-SHHHHHHHHT----T-----------TTTEEE----EE---TTTH
T ss_pred CEEEcCcHHHHHHHHHHhcCC--CCCcEEEE-EC-CHHHHHHHHhh--cc-----------ccceeE----EEE-ecCCH
Confidence 689999999999999999764 24 54433 33 33433333320 00 011111 111 11232
Q ss_pred CCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEe
Q 015291 168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (409)
Q Consensus 168 ~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVIS 207 (409)
+.+.=--.+.|+||.|+|.|....-++..+++|+. .|+
T Consensus 59 ~~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~~--yvD 96 (386)
T PF03435_consen 59 ESLAELLRGCDVVINCAGPFFGEPVARACIEAGVH--YVD 96 (386)
T ss_dssp HHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-E--EEE
T ss_pred HHHHHHHhcCCEEEECCccchhHHHHHHHHHhCCC--eec
Confidence 22211112679999999999888888899999994 454
No 111
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=88.20 E-value=0.58 Score=47.58 Aligned_cols=32 Identities=28% Similarity=0.440 Sum_probs=25.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
..+|||.|+||||+.+.|.+.. | .++|.+-+.
T Consensus 146 gktvGIiG~GrIG~avA~r~~~--F-gm~v~y~~~ 177 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKG--F-GMKVLYYDR 177 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhc--C-CCEEEEECC
Confidence 3589999999999999999873 3 277766553
No 112
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=87.97 E-value=0.63 Score=48.69 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=25.7
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
..+|||+|+|+|||.+.+.+.... ++|++.+
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~fG---m~V~~~d 181 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESLG---MRVYFYD 181 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEC
Confidence 357999999999999999987643 7887765
No 113
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=87.94 E-value=0.68 Score=44.69 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=25.2
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 85 m~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
|++||+|+|+|.||..+++.|.....+..+|..++
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~ 35 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSD 35 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhCCCCcceEEEEc
Confidence 55799999999999999999876431113444444
No 114
>PRK13243 glyoxylate reductase; Reviewed
Probab=87.64 E-value=0.68 Score=47.01 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=26.0
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
..+|||+|+|+||+.+.+.|.... ++|.+.+.
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~G---~~V~~~d~ 181 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGFG---MRILYYSR 181 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC---CEEEEECC
Confidence 458999999999999999987543 68776653
No 115
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=87.57 E-value=6.1 Score=39.48 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=24.2
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+|.|.|.|.||...++++.... .+|+++..
T Consensus 175 ~vlI~G~G~vG~~a~q~ak~~G---~~vi~~~~ 204 (355)
T cd08230 175 RALVLGAGPIGLLAALLLRLRG---FEVYVLNR 204 (355)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CeEEEEec
Confidence 6999999999999998877653 47777753
No 116
>PTZ00117 malate dehydrogenase; Provisional
Probab=87.46 E-value=2.2 Score=43.09 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.4
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~ 109 (409)
.+||+|.|.|.||..+...+..+.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~ 28 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKN 28 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC
Confidence 359999999999999998877654
No 117
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=87.46 E-value=1.1 Score=39.83 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=33.1
Q ss_pred EEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhh
Q 015291 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL 131 (409)
Q Consensus 89 VaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll 131 (409)
|+|.| +|-||++.|+.+...+ ++|+|+++.---+.+.+..+.
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~-d~f~v~~Lsa~~n~~~L~~q~ 43 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHP-DKFEVVALSAGSNIEKLAEQA 43 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCT-TTEEEEEEEESSTHHHHHHHH
T ss_pred CEEEcCCcHHHHHHHHHHHhCC-CceEEEEEEcCCCHHHHHHHH
Confidence 68999 9999999999998875 469999997644555554444
No 118
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=87.40 E-value=1.3 Score=46.26 Aligned_cols=98 Identities=23% Similarity=0.279 Sum_probs=58.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~ 166 (409)
+||-|.|.|.||+.+++-|..+.+ .+|. |.|. +++.++.+. ++..+ .+ +.+.++- .+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d--~~V~-iAdR-s~~~~~~i~--~~~~~----~v-----~~~~vD~--------~d 58 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD--GEVT-IADR-SKEKCARIA--ELIGG----KV-----EALQVDA--------AD 58 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC--ceEE-EEeC-CHHHHHHHH--hhccc----cc-----eeEEecc--------cC
Confidence 589999999999999999887643 5544 3343 333443332 12211 11 1222221 11
Q ss_pred CCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEe
Q 015291 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (409)
Q Consensus 167 p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVIS 207 (409)
.+.+.=--.+.|+||.|.+.|....-.+..+++|..-|-+|
T Consensus 59 ~~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts 99 (389)
T COG1748 59 VDALVALIKDFDLVINAAPPFVDLTILKACIKTGVDYVDTS 99 (389)
T ss_pred hHHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCCCEEEcc
Confidence 11110000145999999999999998889999999644444
No 119
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=87.36 E-value=5.7 Score=43.63 Aligned_cols=31 Identities=16% Similarity=0.106 Sum_probs=25.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
-.|.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G---~~Vval~R 112 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLG---FRVRAGVR 112 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC---CeEEEEeC
Confidence 3689999 8999999999998764 57776643
No 120
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=87.12 E-value=1.6 Score=50.95 Aligned_cols=92 Identities=20% Similarity=0.209 Sum_probs=58.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCce------------EEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEE
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD------------VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISV 154 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~------------vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v 154 (409)
-||+|.|.|+||+..++.|.+.. +++ +|+|.|+ +++.+..+.+ .++ .+
T Consensus 570 ~rIlVLGAG~VG~~~a~~La~~~--~~~~~~~~~~~~~~~lV~VaD~-~~~~a~~la~------~~~-~~---------- 629 (1042)
T PLN02819 570 QNVLILGAGRVCRPAAEYLASVK--TISYYGDDSEEPTDVHVIVASL-YLKDAKETVE------GIE-NA---------- 629 (1042)
T ss_pred CcEEEECCCHHHHHHHHHHHhCc--CccccccccccccccEEEEECC-CHHHHHHHHH------hcC-CC----------
Confidence 48999999999999999998653 344 6788886 3333322221 000 00
Q ss_pred CCeEEEEEecCCCCCCC-ccccCccEEEeCCCCCCChhhHHHHHHcCCC
Q 015291 155 DGKLIKVVSNRDPLQLP-WAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (409)
Q Consensus 155 ~gk~I~v~~~~~p~~l~-W~~~gvDiVle~TG~f~s~e~a~~hl~aGak 202 (409)
+.+.+ ...|++++. +- .++|+|+-|++.+...+-+...+++|..
T Consensus 630 --~~v~l-Dv~D~e~L~~~v-~~~DaVIsalP~~~H~~VAkaAieaGkH 674 (1042)
T PLN02819 630 --EAVQL-DVSDSESLLKYV-SQVDVVISLLPASCHAVVAKACIELKKH 674 (1042)
T ss_pred --ceEEe-ecCCHHHHHHhh-cCCCEEEECCCchhhHHHHHHHHHcCCC
Confidence 11111 012333221 10 2699999999999999999999999984
No 121
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=87.04 E-value=0.82 Score=46.12 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=25.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
.+|||+|+|.||+.+.+.|.... ++|.+.+.
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG---~~V~~~~~ 167 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWG---FPLRCWSR 167 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 48999999999999999988543 78776653
No 122
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.00 E-value=4.2 Score=40.27 Aligned_cols=150 Identities=15% Similarity=0.129 Sum_probs=74.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhc-----cc--ccccccCceEEEecCCeEEECCeEEE
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK-----YD--SLLGTFKADVKIVDNETISVDGKLIK 160 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~-----yD--S~~G~f~~~v~~~~~~~l~v~gk~I~ 160 (409)
||||+|.|.+|+.+...+.... ++|+.++-. ++.+....+ +| -..|.+.... .+.. . ..++
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G---~~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~---~~~~--~--~~l~ 74 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAG---VDVLVFETT--EELATAGRNRIEKSLERAVSRGKLTERE---RDAA--L--ARLR 74 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCC---CEEEEEECC--HHHHHHHHHHHHHHHHHHHhcccCChhh---HHHH--H--hCeE
Confidence 8999999999999998887653 677666532 222222110 00 0112221100 0000 1 1233
Q ss_pred EEecCCCCCCCccccCccEEEeCCCCCCChhhH-----HHHH-HcCCCEEEEeCCCCC--------CCCCe---EEecCC
Q 015291 161 VVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGA-----GKHI-QAGAKKVIITAPAKG--------ADIPT---YVVGVN 223 (409)
Q Consensus 161 v~~~~~p~~l~W~~~gvDiVle~TG~f~s~e~a-----~~hl-~aGakkVVISaps~~--------~dvP~---vV~gVN 223 (409)
+. .+.+.+ .++|+||||.......+.. +++. ..|+ ++.|+.+.- -..|- .+--.|
T Consensus 75 ~~--~~~~~~----~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~la~~~~~~~r~~g~hf~~ 146 (286)
T PRK07819 75 FT--TDLGDF----ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKLAAATKRPGRVLGLHFFN 146 (286)
T ss_pred ee--CCHHHh----CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHhhcCCCccEEEEecCC
Confidence 32 334333 2899999998655443222 2333 3344 777766521 01121 112234
Q ss_pred ccccCcCCCcEEecCCcchhhhHHHHHHHHhhcCc
Q 015291 224 EKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGI 258 (409)
Q Consensus 224 ~~~~~~~~~~IISnaSCTTn~Lapvlk~L~~~fGI 258 (409)
+-.+-+. -.||..+.+....+.-+...+.+.+|-
T Consensus 147 P~~~~~l-vElv~~~~T~~~~~~~~~~~~~~~lgk 180 (286)
T PRK07819 147 PVPVLPL-VELVPTLVTSEATVARAEEFASDVLGK 180 (286)
T ss_pred CcccCce-EEEeCCCCCCHHHHHHHHHHHHHhCCC
Confidence 3222222 347767677666666666665655554
No 123
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=86.82 E-value=1 Score=40.65 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=24.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+|||++|+|+.|+.+.+.|.... ++|.+.|-
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g---~~v~~~d~ 32 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAG---YEVTVYDR 32 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTT---TEEEEEES
T ss_pred CEEEEEchHHHHHHHHHHHHhcC---CeEEeecc
Confidence 69999999999999999998764 68776663
No 124
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=86.67 E-value=0.87 Score=46.27 Aligned_cols=31 Identities=29% Similarity=0.463 Sum_probs=25.4
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
.++|||+|+|+||+.+.+.|.... ++|++.+
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~G---~~V~~~d 176 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGFG---ATITAYD 176 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CEEEEEe
Confidence 358999999999999999987643 6877665
No 125
>PLN02306 hydroxypyruvate reductase
Probab=86.09 E-value=0.91 Score=47.26 Aligned_cols=31 Identities=26% Similarity=0.481 Sum_probs=24.5
Q ss_pred eeeEEEEcCChhHHHHHHHHH-hCCCCCceEEEEe
Q 015291 86 KLKVAINGFGRIGRNFLRCWH-GRKDSPLDVVVVN 119 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~-~~~~~~~~vVaIn 119 (409)
.-+|||+|||+||+.+.+.+. .. .++|.+.+
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~f---Gm~V~~~d 196 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGF---KMNLIYYD 196 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC---CCEEEEEC
Confidence 357999999999999999874 33 27887665
No 126
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=85.99 E-value=0.94 Score=47.07 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=25.5
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
..+|||+|+|.||+.+.+.|.... ++|.+.+
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~G---~~V~~~d 146 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEALG---IKTLLCD 146 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC---CEEEEEC
Confidence 358999999999999999987653 7877664
No 127
>PLN03139 formate dehydrogenase; Provisional
Probab=85.95 E-value=0.87 Score=47.43 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=24.9
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
..+|||+|+|+||+.+++.|.... ++|.+.+
T Consensus 199 gktVGIVG~G~IG~~vA~~L~afG---~~V~~~d 229 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPFN---CNLLYHD 229 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHCC---CEEEEEC
Confidence 358999999999999999987542 6776654
No 128
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=85.88 E-value=3.7 Score=42.33 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=26.5
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 86 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
.+||.|.| +|.||+.+++.|.++. .+|+++..
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G---~~V~~l~R 92 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRG---YNVVAVAR 92 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEEe
Confidence 35899999 9999999999998764 57777754
No 129
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=85.74 E-value=0.99 Score=44.30 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=25.9
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 85 m~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
|.+||||.|+|.+|+.+.+.|.... ++|.+.+
T Consensus 1 ~~~~IgviG~G~mG~~~a~~l~~~g---~~v~~~d 32 (296)
T PRK11559 1 MTMKVGFIGLGIMGKPMSKNLLKAG---YSLVVYD 32 (296)
T ss_pred CCceEEEEccCHHHHHHHHHHHHCC---CeEEEEc
Confidence 4579999999999999999988643 5776665
No 130
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=85.34 E-value=3.9 Score=40.30 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=18.8
Q ss_pred eEEEEcCChhHHHHHHHHHhCC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~ 109 (409)
+|.|+|.|.||...++++..+.
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~G 168 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAAG 168 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHcC
Confidence 6899999999999998877653
No 131
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=85.09 E-value=2.1 Score=43.84 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=28.5
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~ 121 (409)
++||||+|. ++|+..++++.+.. +++++|||-|.
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~-~~~eLvaV~d~ 36 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAP-ERFELAGILAQ 36 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCC-CCcEEEEEEcC
Confidence 479999999 67999999987653 25999999987
No 132
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=84.80 E-value=1.7 Score=43.50 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=26.1
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
.-||+|.|+|++|+.+++.|.... .+|.+++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~G---a~V~v~~r 183 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALG---ANVTVGAR 183 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC---CEEEEEEC
Confidence 358999999999999999998654 47766654
No 133
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=84.79 E-value=2.5 Score=44.70 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=24.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
-+|+|.|+|.||+.+++.+.... .+|+.++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~G---a~ViV~d 242 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLG---ARVIVTE 242 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEc
Confidence 47999999999999999988664 4766554
No 134
>PRK06223 malate dehydrogenase; Reviewed
Probab=84.68 E-value=4.3 Score=40.20 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=23.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaI 118 (409)
+||+|.|.|.+|..++..+..+.. .+|+-+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~--~ev~L~ 32 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKEL--GDVVLF 32 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--eEEEEE
Confidence 699999999999999998876531 165555
No 135
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=84.44 E-value=0.72 Score=38.15 Aligned_cols=92 Identities=26% Similarity=0.296 Sum_probs=55.6
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEE-ec
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV-SN 164 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~-~~ 164 (409)
+.||+|.|.|+.|+.++...+.. ..+.++++-|. +++ + .|+ .++| ++|+ +.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~--~g~~i~~~~dv-~~~-------------~--------~G~--~i~g--ipV~~~~ 54 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSM--RGFGIVAVFDV-DPE-------------K--------IGK--EIGG--IPVYGSM 54 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHH--HCECEEEEEEE-CTT-------------T--------TTS--EETT--EEEESSH
T ss_pred CCeEEEECCCCcHHHHHHhHHHH--cCCCCEEEEEc-CCC-------------c--------cCc--EECC--EEeeccH
Confidence 35899999999999887444433 23677666553 111 1 111 1444 4554 21
Q ss_pred CCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 015291 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (409)
Q Consensus 165 ~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISap 209 (409)
.+..+. - ++|+.+-|.+.....+.+...+++|.|.++.-+|
T Consensus 55 ~~l~~~--~--~i~iaii~VP~~~a~~~~~~~~~~gIk~i~nft~ 95 (96)
T PF02629_consen 55 DELEEF--I--EIDIAIITVPAEAAQEVADELVEAGIKGIVNFTP 95 (96)
T ss_dssp HHHHHH--C--TTSEEEEES-HHHHHHHHHHHHHTT-SEEEEESS
T ss_pred HHhhhh--h--CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 222111 1 3899999998777777888889999998776554
No 136
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=84.19 E-value=5.6 Score=38.69 Aligned_cols=31 Identities=35% Similarity=0.415 Sum_probs=24.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|||+|.|.|.+|..+...|.+.. .+|..+..
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g---~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG---HDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CeEEEEEC
Confidence 48999999999999999888653 35555543
No 137
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=84.04 E-value=2.3 Score=43.28 Aligned_cols=141 Identities=25% Similarity=0.263 Sum_probs=71.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCC-CceEEEEeCC---CChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEE
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDS-PLDVVVVNDS---GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~-~~~vVaInd~---~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~ 162 (409)
+||+|.|.|.||..++-+|..+... ++-++-|++- +..- |-.|+ ..+.+....+.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~--------DL~~~-------------~~~~~~~~~i~ 59 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVAL--------DLSHA-------------AAPLGSDVKIT 59 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhc--------chhhc-------------chhccCceEEe
Confidence 4899999999999999888655433 3444445521 1111 11111 11222223332
Q ss_pred ecCCCCCCCccccCccEEEeCCCCCCC----hhh------------HHHHHHcC--CCEEEEeCCCCCCCCCeEEecCCc
Q 015291 163 SNRDPLQLPWAELGIDIVIEGTGVFVD----GPG------------AGKHIQAG--AKKVIITAPAKGADIPTYVVGVNE 224 (409)
Q Consensus 163 ~~~~p~~l~W~~~gvDiVle~TG~f~s----~e~------------a~~hl~aG--akkVVISaps~~~dvP~vV~gVN~ 224 (409)
...+-+++. +.|+|+-+.|.-.. |.. ++.-.+.+ +.-+|+|+|. |+-+++.--+.
T Consensus 60 ~~~~y~~~~----~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv---D~~ty~~~k~s 132 (313)
T COG0039 60 GDGDYEDLK----GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV---DILTYIAMKFS 132 (313)
T ss_pred cCCChhhhc----CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH---HHHHHHHHHhc
Confidence 212223332 88999999876543 211 11112222 2234447774 22222221111
Q ss_pred cccCcCCCcEEecCCcchhhhHHHHHHHHhhcCccE
Q 015291 225 KDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVK 260 (409)
Q Consensus 225 ~~~~~~~~~IISnaSCTTn~Lapvlk~L~~~fGI~~ 260 (409)
.. +. .++| .+-|+-=-+++-..|-++|++.-
T Consensus 133 g~--p~-~rvi--g~gt~LDsaR~~~~lae~~~v~~ 163 (313)
T COG0039 133 GF--PK-NRVI--GSGTVLDSARFRTFLAEKLGVSP 163 (313)
T ss_pred CC--Cc-ccee--cccchHHHHHHHHHHHHHhCCCh
Confidence 11 22 5666 34556666788888899999843
No 138
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=83.81 E-value=1.7 Score=41.25 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=26.1
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCce-EEEEeC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVND 120 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~-vVaInd 120 (409)
.+||+|.|.|++|+.+++.|......+++ ++..++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~ 39 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNR 39 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECC
Confidence 47899999999999999988765322344 556664
No 139
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=83.74 E-value=2.8 Score=41.99 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=24.7
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
..||+|.|+|.||+.+++.|..+.. -+|..+|.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~--~~V~v~~r 210 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGV--AEITIANR 210 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCC--CEEEEEeC
Confidence 3689999999999999999886431 24555553
No 140
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=83.54 E-value=2.7 Score=42.75 Aligned_cols=100 Identities=21% Similarity=0.152 Sum_probs=50.5
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECC-eEEEEEecCC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDG-KLIKVVSNRD 166 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~g-k~I~v~~~~~ 166 (409)
+|+|.|.|.||-..+.++.... .-+|+++ |. +.+-++..-++. +....++. +.... ..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~G--a~~Viv~-d~-~~~Rl~~A~~~~--------------g~~~~~~~~~~~~~---~~ 229 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLG--ASVVIVV-DR-SPERLELAKEAG--------------GADVVVNPSEDDAG---AE 229 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcC--CceEEEe-CC-CHHHHHHHHHhC--------------CCeEeecCccccHH---HH
Confidence 7999999999998766665442 2466666 43 233332222211 11111211 11000 00
Q ss_pred CCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 015291 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (409)
Q Consensus 167 p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISap 209 (409)
...+.. ..|+|+||||+|.....+.+-..++.|-.-+++.-+
T Consensus 230 ~~~~t~-g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 230 ILELTG-GRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred HHHHhC-CCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEecc
Confidence 001111 137999999999554445555555555533444433
No 141
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=82.80 E-value=3.5 Score=36.58 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.2
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhCC
Q 015291 87 LKVAINGF-GRIGRNFLRCWHGRK 109 (409)
Q Consensus 87 ikVaInGf-GrIGr~vlr~l~~~~ 109 (409)
|||+|.|. |.||..++-.|..+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~ 24 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQG 24 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTT
T ss_pred CEEEEECCCChHHHHHHHHHHhCC
Confidence 58999997 999999998887664
No 142
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.67 E-value=1.6 Score=44.86 Aligned_cols=99 Identities=21% Similarity=0.261 Sum_probs=61.0
Q ss_pred cceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEe
Q 015291 84 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (409)
Q Consensus 84 ~m~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~ 163 (409)
.+.+|+||+|.|+|+|.++++|......+..||||.++ +.+.. .+|-..|+. + +.++ +++-
T Consensus 4 s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~-s~~~A---~~fAq~~~~-~-~~k~-------y~sy------ 64 (351)
T KOG2741|consen 4 SATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP-SLERA---KEFAQRHNI-P-NPKA-------YGSY------ 64 (351)
T ss_pred CceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecc-cHHHH---HHHHHhcCC-C-CCcc-------ccCH------
Confidence 34699999999999999999998764446899999997 33322 111111211 0 0000 1110
Q ss_pred cCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEe
Q 015291 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (409)
Q Consensus 164 ~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVIS 207 (409)
+++. ++..||+|.-++..-...|.+-..++.|- .|++-
T Consensus 65 -EeLa----kd~~vDvVyi~~~~~qH~evv~l~l~~~K-~VL~E 102 (351)
T KOG2741|consen 65 -EELA----KDPEVDVVYISTPNPQHYEVVMLALNKGK-HVLCE 102 (351)
T ss_pred -HHHh----cCCCcCEEEeCCCCccHHHHHHHHHHcCC-cEEec
Confidence 1111 12368999988887777777777777653 35553
No 143
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=82.45 E-value=2.1 Score=44.68 Aligned_cols=113 Identities=19% Similarity=0.219 Sum_probs=62.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhc-ccccccccCceEEEecCC---eEE--EC--Ce
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK-YDSLLGTFKADVKIVDNE---TIS--VD--GK 157 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~-yDS~~G~f~~~v~~~~~~---~l~--v~--gk 157 (409)
.||+|.| ||-||++.|+.+..++ ..|+|+++.--.+.+.++.+.+ |... -+-..++. .+. .. |.
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~-~~f~v~~Laa~~n~~~L~~q~~~f~p~------~v~i~d~~~~~~l~~~l~~~~~ 74 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNP-DHFQVVALSAGKNVALMVEQILEFRPK------FVAIDDEASLKDLKTMLQQQGS 74 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCc-cccEEEEEEcCCCHHHHHHHHHHcCCC------EEEEcCHHHHHHHHHHhhcCCC
Confidence 3899999 9999999999987654 3599999976545555544442 2221 11110000 000 01 21
Q ss_pred EEEEEecCC-CCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeC
Q 015291 158 LIKVVSNRD-PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (409)
Q Consensus 158 ~I~v~~~~~-p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISa 208 (409)
.++++...+ ..++- ....+|+|+-+.-.+....---..+++| |++-+.+
T Consensus 75 ~~~v~~G~~~l~~l~-~~~~~D~vv~AivG~aGL~pt~~Ai~~g-k~iaLAN 124 (389)
T TIGR00243 75 RTEVLVGEEGICEMA-ALEDVDQVMNAIVGAAGLLPTLAAIRAG-KTIALAN 124 (389)
T ss_pred CcEEEECHHHHHHHH-cCCCCCEEEEhhhcHhhHHHHHHHHHCC-CcEEEec
Confidence 233433221 11110 1125899999886666655555778888 4555543
No 144
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=82.41 E-value=1.7 Score=45.28 Aligned_cols=30 Identities=23% Similarity=0.457 Sum_probs=24.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
.+|||+|+|.||+.+.+.|.... ++|++.+
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G---~~V~~~D 146 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLG---WKVLVCD 146 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEC
Confidence 57999999999999999987653 6876654
No 145
>PLN02214 cinnamoyl-CoA reductase
Probab=82.41 E-value=6.6 Score=39.37 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=25.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
.+|.|-| .|.||+.+++.|.++. .+|+++..
T Consensus 11 ~~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~r 42 (342)
T PLN02214 11 KTVCVTGAGGYIASWIVKILLERG---YTVKGTVR 42 (342)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCc---CEEEEEeC
Confidence 4799999 8999999999998764 57777654
No 146
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=82.35 E-value=5.8 Score=39.51 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=22.5
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEe
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~-~vVaIn 119 (409)
+|.|+|.|.||...++++..+. . .|+++.
T Consensus 172 ~VlV~G~G~vG~~aiqlak~~G---~~~Vi~~~ 201 (343)
T PRK09880 172 RVFVSGVGPIGCLIVAAVKTLG---AAEIVCAD 201 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CcEEEEEe
Confidence 6999999999999998887653 3 455553
No 147
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=82.20 E-value=2.7 Score=42.51 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=19.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~ 109 (409)
.||+|.|.|.+|..+...+..+.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~g 29 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKN 29 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC
Confidence 48999999999999998877553
No 148
>PRK08605 D-lactate dehydrogenase; Validated
Probab=82.10 E-value=1.7 Score=44.08 Aligned_cols=32 Identities=38% Similarity=0.469 Sum_probs=24.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
.++|||+|+|+||+.+.+.|.. .+ .++|.+.+
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~-~~-g~~V~~~d 177 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAK-GY-GSDVVAYD 177 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-cC-CCEEEEEC
Confidence 4589999999999999999842 21 26776654
No 149
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=81.70 E-value=1.8 Score=42.44 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=25.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|||+|+|.|.||..+.+.|.... .+|.+++.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g---~~V~~~d~ 31 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLG---HTVYGVSR 31 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCC---CEEEEEEC
Confidence 48999999999999999998653 57777753
No 150
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=81.70 E-value=1.7 Score=46.82 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=25.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
.+|||+|+|+||+.+.+.|.... ++|++.+.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG---~~V~~~d~ 169 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFG---MKVLAYDP 169 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEECC
Confidence 47999999999999999987543 78887764
No 151
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=81.10 E-value=3.3 Score=43.62 Aligned_cols=29 Identities=21% Similarity=0.517 Sum_probs=23.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaI 118 (409)
-+|+|.|+|.||+.+++.+.... .+|+++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~G---a~ViV~ 231 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQG---ARVIVT 231 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEE
Confidence 47999999999999999887654 466654
No 152
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=81.04 E-value=5 Score=42.02 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=24.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
.+|+|.|.|.+|+.+++.|..+.. -+|+.+|.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~--~~V~v~~r 214 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGV--RKITVANR 214 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCC--CeEEEEeC
Confidence 589999999999999999986531 15555654
No 153
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=80.82 E-value=1.9 Score=46.49 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=26.4
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
..+|||+|+|+||+.+.+.|.... ++|++.+.
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~fG---~~V~~~d~ 171 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAFG---MKVIAYDP 171 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CEEEEECC
Confidence 357999999999999999987543 78887764
No 154
>PLN02602 lactate dehydrogenase
Probab=80.74 E-value=4.8 Score=41.43 Aligned_cols=149 Identities=17% Similarity=0.184 Sum_probs=74.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCC-CCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~-~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~ 165 (409)
.||+|.|.|.||..++-.|..+.. ..+-++-||+- .+.=...|-.|.. .+-+. ..|....
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~-----~~~g~a~DL~~~~-------------~~~~~-~~i~~~~ 98 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPD-----KLRGEMLDLQHAA-------------AFLPR-TKILAST 98 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCc-----hhhHHHHHHHhhh-------------hcCCC-CEEEeCC
Confidence 599999999999999988876532 12333333321 0111111322211 11111 1232212
Q ss_pred CCCCCCccccCccEEEeCCCCCC----Chh------------hHHHHHHcC--CCEEEEeCCCCCCCCCeEEecCCcccc
Q 015291 166 DPLQLPWAELGIDIVIEGTGVFV----DGP------------GAGKHIQAG--AKKVIITAPAKGADIPTYVVGVNEKDY 227 (409)
Q Consensus 166 ~p~~l~W~~~gvDiVle~TG~f~----s~e------------~a~~hl~aG--akkVVISaps~~~dvP~vV~gVN~~~~ 227 (409)
+.+++ .+.|+||-+.|.-. +|. .++.-.+.+ +..+++|+|. |+-+.+. -....+
T Consensus 99 dy~~~----~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv---dv~t~~~-~k~sg~ 170 (350)
T PLN02602 99 DYAVT----AGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV---DVLTYVA-WKLSGF 170 (350)
T ss_pred CHHHh----CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch---HHHHHHH-HHHhCC
Confidence 33333 28899999998743 331 122222232 3334446664 2211111 000112
Q ss_pred CcCCCcEEecCCcchhhhHHHHHHHHhhcCccEEEeeee
Q 015291 228 DHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266 (409)
Q Consensus 228 ~~~~~~IISnaSCTTn~Lapvlk~L~~~fGI~~~~mTTi 266 (409)
. +++|| +.||.-=-+.+-..|.+.+|+..-.+..+
T Consensus 171 p--~~rvi--G~gt~LDs~R~r~~lA~~l~v~~~~V~~~ 205 (350)
T PLN02602 171 P--ANRVI--GSGTNLDSSRFRFLIADHLDVNAQDVQAY 205 (350)
T ss_pred C--HHHEE--eecchHHHHHHHHHHHHHhCCCccceeee
Confidence 2 25787 34555556788888999999886655554
No 155
>PLN02256 arogenate dehydrogenase
Probab=80.73 E-value=2.2 Score=42.85 Aligned_cols=33 Identities=30% Similarity=0.530 Sum_probs=27.1
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~ 121 (409)
++||+|+|+|.+|+.+.+.|.+.. .+|++++..
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G---~~V~~~d~~ 68 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQG---HTVLATSRS 68 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCC---CEEEEEECc
Confidence 468999999999999999987643 578877654
No 156
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=80.72 E-value=2.2 Score=43.79 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=26.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~ 121 (409)
-+|||+|+|+||+.+.+.|.... ++|++.++.
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G---~~ViV~~r~ 48 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSG---VEVVVGVRP 48 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCc---CEEEEEECc
Confidence 37999999999999999998653 788777654
No 157
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=80.65 E-value=7.1 Score=37.76 Aligned_cols=137 Identities=17% Similarity=0.211 Sum_probs=68.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCce-EEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~-vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~ 166 (409)
+|.|.|.|.||...++++..+. .. |+++ +. +.+.+..+.++ | .+ ..++.+.. . +.
T Consensus 123 ~VlV~G~G~vG~~~~~~ak~~G---~~~Vi~~-~~-~~~r~~~a~~~----G---a~--------~~i~~~~~---~-~~ 178 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAAG---AARVVAA-DP-SPDRRELALSF----G---AT--------ALAEPEVL---A-ER 178 (280)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCEEEEE-CC-CHHHHHHHHHc----C---Cc--------EecCchhh---H-HH
Confidence 6899999999999988877653 44 6666 32 22222211111 1 00 11111100 0 00
Q ss_pred CCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEecCCccccCcCCCcEEecCCcchhhhH
Q 015291 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLA 246 (409)
Q Consensus 167 p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~~~dvP~vV~gVN~~~~~~~~~~IISnaSCTTn~La 246 (409)
..++.. ..++|+||||+|.-...+.+-..++.|.+-+++...... .+ ..+|...+-.....|+..-..+...+.
T Consensus 179 ~~~~~~-~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~--~~---~~i~~~~~~~~~~~i~g~~~~~~~~~~ 252 (280)
T TIGR03366 179 QGGLQN-GRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPG--GP---VALDPEQVVRRWLTIRGVHNYEPRHLD 252 (280)
T ss_pred HHHHhC-CCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCC--Cc---eeeCHHHHHhCCcEEEecCCCCHHHHH
Confidence 000111 137899999999765555666777766644444432211 11 133443332122456655444445566
Q ss_pred HHHHHHHh
Q 015291 247 PFVKVMDE 254 (409)
Q Consensus 247 pvlk~L~~ 254 (409)
.+++.|.+
T Consensus 253 ~~~~~l~~ 260 (280)
T TIGR03366 253 QAVRFLAA 260 (280)
T ss_pred HHHHHHHh
Confidence 66776665
No 158
>PLN02712 arogenate dehydrogenase
Probab=80.59 E-value=2.2 Score=47.56 Aligned_cols=35 Identities=31% Similarity=0.443 Sum_probs=28.6
Q ss_pred cceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 015291 84 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 84 ~m~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~ 121 (409)
.+++||||+|+|+||+.+.+.|.... .+|++++..
T Consensus 367 ~~~~kIgIIGlG~mG~slA~~L~~~G---~~V~~~dr~ 401 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQFLAKTMVKQG---HTVLAYSRS 401 (667)
T ss_pred CCCCEEEEEecCHHHHHHHHHHHHCc---CEEEEEECC
Confidence 34679999999999999999998643 588877754
No 159
>PLN00106 malate dehydrogenase
Probab=79.97 E-value=9.8 Score=38.73 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.4
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhC
Q 015291 87 LKVAINGF-GRIGRNFLRCWHGR 108 (409)
Q Consensus 87 ikVaInGf-GrIGr~vlr~l~~~ 108 (409)
.||+|.|. |.||..+...|..+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~ 41 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMN 41 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC
Confidence 48999996 99999999988755
No 160
>PLN02712 arogenate dehydrogenase
Probab=79.33 E-value=2.4 Score=47.28 Aligned_cols=33 Identities=30% Similarity=0.459 Sum_probs=27.3
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~ 121 (409)
++||||+|+|+||+.+.+.|.... ++|++++..
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G---~~V~~~dr~ 84 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQG---HTVLAHSRS 84 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCC---CEEEEEeCC
Confidence 469999999999999999998653 688877653
No 161
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.87 E-value=11 Score=40.09 Aligned_cols=86 Identities=19% Similarity=0.163 Sum_probs=52.3
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCCC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~p 167 (409)
||.|.|+|++|+..++.|..+. .+|++ .|. ..+....+.+ + |-.+ +.+ ...+
T Consensus 14 ~v~V~G~G~sG~aa~~~L~~~G---~~v~~-~D~-~~~~~~~l~~----~-----------g~~~-~~~-------~~~~ 65 (488)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFG---ARPTV-CDD-DPDALRPHAE----R-----------GVAT-VST-------SDAV 65 (488)
T ss_pred eEEEEcCCHHHHHHHHHHHHCC---CEEEE-EcC-CHHHHHHHHh----C-----------CCEE-EcC-------cchH
Confidence 7999999999999999888764 46554 553 2222222111 0 1011 111 1112
Q ss_pred CCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEe
Q 015291 168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (409)
Q Consensus 168 ~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVIS 207 (409)
+.+. +.|+||.+.|.-.+.+......+.|. -|++
T Consensus 66 ~~l~----~~D~VV~SpGi~~~~p~~~~a~~~gi--~v~~ 99 (488)
T PRK03369 66 QQIA----DYALVVTSPGFRPTAPVLAAAAAAGV--PIWG 99 (488)
T ss_pred hHhh----cCCEEEECCCCCCCCHHHHHHHHCCC--cEee
Confidence 2232 57999999999888777777777887 3454
No 162
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=78.84 E-value=1.6 Score=38.13 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.5
Q ss_pred eEEEEcCChhHHHHHHHHHhCC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~ 109 (409)
||.|.|.|.+|-.+++.|....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~G 22 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSG 22 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCC
Confidence 6899999999999999998654
No 163
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=78.58 E-value=11 Score=36.27 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=25.6
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+|-|-| +|-||+.+++.|.++. .+|+++..
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g---~~V~~~~r 32 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAG---HDVRGLDR 32 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCC---CeEEEEeC
Confidence 489999 9999999999999863 58888875
No 164
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=78.37 E-value=11 Score=38.68 Aligned_cols=80 Identities=25% Similarity=0.229 Sum_probs=51.2
Q ss_pred ceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEE-eCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEE
Q 015291 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV-NDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (409)
Q Consensus 85 m~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaI-nd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~ 162 (409)
+.++|.|-| .|-||.-+++.|++|. ..|.|- .++.+.+...||.+.+.. ++.+ +++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG---Y~V~gtVR~~~~~k~~~~L~~l~~a------------~~~l-------~l~ 62 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG---YTVRGTVRDPEDEKKTEHLRKLEGA------------KERL-------KLF 62 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC---CEEEEEEcCcchhhhHHHHHhcccC------------cccc-------eEE
Confidence 346899999 9999999999999885 466554 445565666677765521 1111 222
Q ss_pred e--cCCCCCCCccccCccEEEeCCCC
Q 015291 163 S--NRDPLQLPWAELGIDIVIEGTGV 186 (409)
Q Consensus 163 ~--~~~p~~l~W~~~gvDiVle~TG~ 186 (409)
. -.+++.|+=.-.|+|.||-++-.
T Consensus 63 ~aDL~d~~sf~~ai~gcdgVfH~Asp 88 (327)
T KOG1502|consen 63 KADLLDEGSFDKAIDGCDGVFHTASP 88 (327)
T ss_pred eccccccchHHHHHhCCCEEEEeCcc
Confidence 1 13455555444588888887644
No 165
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=78.02 E-value=5.9 Score=39.68 Aligned_cols=86 Identities=16% Similarity=0.056 Sum_probs=55.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~ 165 (409)
-||-|.| +|++|+.+++-+....++ .+.+||-. ++..+ +.| ++++ +
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g~~--~v~~V~p~-----------------~~~~~----------v~G--~~~y--~ 53 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYGTN--IVGGVTPG-----------------KGGTT----------VLG--LPVF--D 53 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCCCC--EEEEECCC-----------------CCcce----------ecC--eecc--C
Confidence 3899999 999999999888766542 66667631 11111 222 2222 3
Q ss_pred CCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEE
Q 015291 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (409)
Q Consensus 166 ~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVI 206 (409)
..+++|..- ++|+++-+.+...-.+-.+...+.|+|.+||
T Consensus 54 sv~dlp~~~-~~Dlavi~vpa~~v~~~l~e~~~~Gvk~avI 93 (286)
T TIGR01019 54 SVKEAVEET-GANASVIFVPAPFAADAIFEAIDAGIELIVC 93 (286)
T ss_pred CHHHHhhcc-CCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence 445555321 3799999888776666677777888887766
No 166
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=77.67 E-value=3.8 Score=42.73 Aligned_cols=108 Identities=18% Similarity=0.224 Sum_probs=59.3
Q ss_pred EEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhc-ccccccccCceEEEecC---CeEE--ECCeEEEEEe
Q 015291 91 ING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK-YDSLLGTFKADVKIVDN---ETIS--VDGKLIKVVS 163 (409)
Q Consensus 91 InG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~-yDS~~G~f~~~v~~~~~---~~l~--v~gk~I~v~~ 163 (409)
|.| ||-||++.|+.+...+ ++|+|+++.--.+.+.++.+.+ |... -+-..++ ..+. ..++.++++.
T Consensus 1 ILGsTGSIG~qtLdVi~~~~-d~f~v~~Laa~~n~~~L~~q~~~f~p~------~v~i~~~~~~~~l~~~l~~~~~~v~~ 73 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHP-EHFKVVGLTANYNIELLEQQIKRFQPR------IVSVADKELADTLRTRLSANTSKITY 73 (383)
T ss_pred CCccccHHHHHHHHHHHhCc-cccEEEEEECCCCHHHHHHHHHHhCCC------EEEEcCHHHHHHHHHhccCCCcEEEE
Confidence 579 9999999999987653 3599999976545555554442 2221 1111000 0000 1121233433
Q ss_pred cCC-CCC-CCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeC
Q 015291 164 NRD-PLQ-LPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (409)
Q Consensus 164 ~~~-p~~-l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISa 208 (409)
..+ ..+ ..+ ..+|+|+-+.-.+...+-.-..+++| |++-+.+
T Consensus 74 G~~~l~~l~~~--~~~D~vv~AivG~aGL~pt~~Ai~~g-k~iaLAN 117 (383)
T PRK12464 74 GTDGLIAVATH--PGSDLVLSSVVGAAGLLPTIEALKAK-KDIALAN 117 (383)
T ss_pred CHHHHHHHHcC--CCCCEEEEhhhcHhhHHHHHHHHHCC-CcEEEec
Confidence 221 111 111 26899999886666655556778888 4555544
No 167
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=77.53 E-value=12 Score=37.76 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~ 109 (409)
.||+|.|.|.||..+.-.|..++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~ 29 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQG 29 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC
Confidence 59999999999999998887653
No 168
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=76.23 E-value=12 Score=40.02 Aligned_cols=90 Identities=22% Similarity=0.242 Sum_probs=57.7
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC-CChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEec
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~-~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~ 164 (409)
.+||+|.|+|+=|+.++|.|.++. .+|. ++|. ...+... ...+... .|.+...
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G---~~v~-v~D~~~~~~~~~--------------------~~~~~~~--~i~~~~g 60 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG---AEVT-VSDDRPAPEGLA--------------------AQPLLLE--GIEVELG 60 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC---CeEE-EEcCCCCccchh--------------------hhhhhcc--CceeecC
Confidence 358999999999999999999874 4544 4452 1111000 0000011 1222222
Q ss_pred CCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEE
Q 015291 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (409)
Q Consensus 165 ~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVI 206 (409)
+.+. ++|. ..|+|+-+=|...+.....+..++|++ |+
T Consensus 61 ~~~~-~~~~--~~d~vV~SPGi~~~~p~v~~A~~~gi~--i~ 97 (448)
T COG0771 61 SHDD-EDLA--EFDLVVKSPGIPPTHPLVEAAKAAGIE--II 97 (448)
T ss_pred ccch-hccc--cCCEEEECCCCCCCCHHHHHHHHcCCc--EE
Confidence 3233 5565 789999999999999999999999994 55
No 169
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=76.12 E-value=13 Score=36.10 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=24.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
.+|.|-| +|-||+.+++.|.++. .+|+++.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g---~~V~~~~ 35 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG---YTVKATV 35 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC---CEEEEEE
Confidence 3799999 9999999999998764 4776654
No 170
>PRK08507 prephenate dehydrogenase; Validated
Probab=76.03 E-value=3.9 Score=39.92 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=25.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|||+|+|+|.+|..+.+.|..... ..+|.+++.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~-~~~v~~~d~ 33 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGL-ISKVYGYDH 33 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCC-CCEEEEEcC
Confidence 389999999999999999986532 246666653
No 171
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=75.69 E-value=6.4 Score=39.51 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=24.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
|||+|.| +|.||..++..|..+.. ..+|+.+.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~-~~~v~lvd 33 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDV-VKEINLIS 33 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEE
Confidence 5899999 59999999999887631 12566554
No 172
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=75.58 E-value=3.8 Score=40.85 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=25.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
-+|+|.|+|+||+.+++.|.... .+|..+|.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G---~~V~v~~R 182 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALG---ARVFVGAR 182 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCC---CEEEEEeC
Confidence 48999999999999999998764 57776665
No 173
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.30 E-value=19 Score=37.91 Aligned_cols=91 Identities=23% Similarity=0.262 Sum_probs=52.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~ 166 (409)
.||.|.|.|.+|..+++.|.++. .+|+.+... +.+....+.++=..+ |=.+..+ ..
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G---~~V~~~d~~-~~~~~~~~~~~l~~~-----------gv~~~~~---------~~ 72 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELG---ARVTVVDDG-DDERHRALAAILEAL-----------GATVRLG---------PG 72 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEeCC-chhhhHHHHHHHHHc-----------CCEEEEC---------CC
Confidence 37999999999999999998765 576666432 211111111100000 1111111 11
Q ss_pred CCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEe
Q 015291 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (409)
Q Consensus 167 p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVIS 207 (409)
+. + ..+.|+||.++|.--..+......+.|. .|++
T Consensus 73 ~~-~---~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi--~v~~ 107 (480)
T PRK01438 73 PT-L---PEDTDLVVTSPGWRPDAPLLAAAADAGI--PVWG 107 (480)
T ss_pred cc-c---cCCCCEEEECCCcCCCCHHHHHHHHCCC--eecc
Confidence 11 1 1268999999998766666666677776 4564
No 174
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=75.05 E-value=6.8 Score=38.58 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=24.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCce-EEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~-vVaInd 120 (409)
-+|.|+|.|.||...++++..+. .. |+++..
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~G---~~~vi~~~~ 196 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARALG---AEDVIGVDP 196 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEECC
Confidence 37999999999999998887654 45 776643
No 175
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=74.68 E-value=4 Score=40.45 Aligned_cols=31 Identities=26% Similarity=0.436 Sum_probs=25.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|||||.|+|.+|+.+.+.|.+.. .+|+..|.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g---~~v~v~dr 31 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGG---HEVVGYDR 31 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCC---CeEEEEEC
Confidence 48999999999999999998754 57776654
No 176
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=74.52 E-value=5.8 Score=40.05 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~ 109 (409)
+||+|.|.|.||..++-.|..++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~ 26 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKG 26 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC
Confidence 59999999999999998887653
No 177
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=74.51 E-value=4.3 Score=39.18 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGR 108 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~ 108 (409)
|||||+|+|++|+.+++.|...
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~ 22 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS 22 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC
Confidence 3899999999999999999865
No 178
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=74.40 E-value=4.2 Score=40.58 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=22.1
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCC
Q 015291 85 AKLKVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 85 m~ikVaInGfGrIGr~vlr~l~~~~ 109 (409)
+.++|+|.|+|.||+.+.|.|.++.
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g 26 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAG 26 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcC
Confidence 3579999999999999999998764
No 179
>PLN02688 pyrroline-5-carboxylate reductase
Probab=74.37 E-value=4.7 Score=38.80 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=26.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCC-CCceEEEEeCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVNDS 121 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~-~~~~vVaInd~ 121 (409)
|||+|+|+|.+|..+++.|.+... +..+|++.++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r 36 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS 36 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC
Confidence 589999999999999999986531 12367767443
No 180
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=74.34 E-value=2.3 Score=43.61 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=19.6
Q ss_pred ceeeEEEEcCChhHHHHHHHHHh
Q 015291 85 AKLKVAINGFGRIGRNFLRCWHG 107 (409)
Q Consensus 85 m~ikVaInGfGrIGr~vlr~l~~ 107 (409)
+.-+|+|.|+||||+.+++-|..
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~ 183 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKP 183 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhh
Confidence 34589999999999999988764
No 181
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=73.94 E-value=18 Score=35.20 Aligned_cols=83 Identities=20% Similarity=0.181 Sum_probs=49.6
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCCC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~p 167 (409)
+|.|+|.|.+|+.+++++..+. .+++++... .+...++.++.. +.. ++- ++.
T Consensus 158 ~vlV~g~g~vg~~~~q~a~~~G---~~vi~~~~~--~~~~~~~~~~g~-------~~~--------~~~--------~~~ 209 (319)
T cd08242 158 KVAVLGDGKLGLLIAQVLALTG---PDVVLVGRH--SEKLALARRLGV-------ETV--------LPD--------EAE 209 (319)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CeEEEEcCC--HHHHHHHHHcCC-------cEE--------eCc--------ccc
Confidence 6899999999999999888764 566666432 333333332211 000 110 000
Q ss_pred CCCCccccCccEEEeCCCCCCChhhHHHHHHcCCC
Q 015291 168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (409)
Q Consensus 168 ~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGak 202 (409)
.++ .++|++|||+|.-..-+.+..+++.+.+
T Consensus 210 --~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~ 240 (319)
T cd08242 210 --SEG--GGFDVVVEATGSPSGLELALRLVRPRGT 240 (319)
T ss_pred --ccC--CCCCEEEECCCChHHHHHHHHHhhcCCE
Confidence 233 2799999999864444566677776653
No 182
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=73.65 E-value=4.4 Score=40.15 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=25.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|||||+|+|++|+.+.+.|.... ++|+..|.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g---~~v~v~dr 31 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDG---HEVVGYDV 31 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCC---CEEEEEEC
Confidence 38999999999999999988653 57776664
No 183
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=73.46 E-value=46 Score=32.35 Aligned_cols=84 Identities=21% Similarity=0.232 Sum_probs=50.6
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCCC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~p 167 (409)
+|.|.|.|.+|+.+++++..+. ++|+++.+.. +....+-+ .|- ...++.+ ..+
T Consensus 170 ~vlV~g~g~vg~~~~~la~~~g---~~v~~~~~~~--~~~~~~~~----~g~-----------~~~~~~~-------~~~ 222 (329)
T cd08298 170 RLGLYGFGASAHLALQIARYQG---AEVFAFTRSG--EHQELARE----LGA-----------DWAGDSD-------DLP 222 (329)
T ss_pred EEEEECCcHHHHHHHHHHHHCC---CeEEEEcCCh--HHHHHHHH----hCC-----------cEEeccC-------ccC
Confidence 6889999999999988776653 6777775432 12211111 110 0001110 001
Q ss_pred CCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEE
Q 015291 168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204 (409)
Q Consensus 168 ~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkV 204 (409)
+.++|++++++|.....+.+..+++.|..-+
T Consensus 223 ------~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v 253 (329)
T cd08298 223 ------PEPLDAAIIFAPVGALVPAALRAVKKGGRVV 253 (329)
T ss_pred ------CCcccEEEEcCCcHHHHHHHHHHhhcCCEEE
Confidence 2368999999887667777888988777433
No 184
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=73.25 E-value=14 Score=40.74 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=27.5
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 86 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
.+||.|-| +|.||+.+++.|.++. ...+|+++..
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g-~~~~V~~~d~ 40 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNY-PDYKIVVLDK 40 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhC-CCCEEEEEeC
Confidence 35899999 9999999999998763 2478887754
No 185
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=73.12 E-value=6.3 Score=32.71 Aligned_cols=29 Identities=41% Similarity=0.706 Sum_probs=23.5
Q ss_pred EEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 89 VaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|-|.|+|++|+.+++.|.++. .+++.|..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~---~~vvvid~ 29 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG---IDVVVIDR 29 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT---SEEEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhCC---CEEEEEEC
Confidence 568999999999999999853 68888865
No 186
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=73.01 E-value=5.2 Score=39.43 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=26.7
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCC-CCceEEEEeC
Q 015291 85 AKLKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVND 120 (409)
Q Consensus 85 m~ikVaInGfGrIGr~vlr~l~~~~~-~~~~vVaInd 120 (409)
|.+||+|.|+|.+|..+++.|.++.. ..-+|.+.+.
T Consensus 1 ~~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r 37 (272)
T PRK12491 1 MNKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDL 37 (272)
T ss_pred CCCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECC
Confidence 55699999999999999999986531 2235665553
No 187
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=72.78 E-value=5.3 Score=40.24 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.0
Q ss_pred eEEEEcCChhHHHHHHHHHhCC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~ 109 (409)
||+|+|.|.||..++..|..+.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~ 22 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALG 22 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcC
Confidence 7999999999999988777653
No 188
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=72.18 E-value=3.1 Score=41.32 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=20.8
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~ 109 (409)
..+|.|.|.|-+|-.+++.|....
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~G 53 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTG 53 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 358999999999999999998654
No 189
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=72.16 E-value=5 Score=39.83 Aligned_cols=31 Identities=29% Similarity=0.533 Sum_probs=25.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|||||+|+|++|..+.+.|.+.. ++|++.|.
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g---~~V~~~dr 31 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRG---HDCVGYDH 31 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCC---CEEEEEEC
Confidence 48999999999999999988653 67776654
No 190
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=72.14 E-value=13 Score=39.37 Aligned_cols=83 Identities=17% Similarity=0.171 Sum_probs=54.1
Q ss_pred eeEEEEcC----ChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEE
Q 015291 87 LKVAINGF----GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (409)
Q Consensus 87 ikVaInGf----GrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~ 162 (409)
-+|+|+|. |.+|+.+++.|.+..+. =+|..||-. ++. +.|. +++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~-g~v~~Vnp~-----------~~~------------------i~G~--~~~ 55 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYK-GKIYPVNPK-----------AGE------------------ILGV--KAY 55 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCC-CcEEEECCC-----------CCc------------------cCCc--ccc
Confidence 47999995 88999999999876431 266777732 111 2221 221
Q ss_pred ecCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEE
Q 015291 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (409)
Q Consensus 163 ~~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVI 206 (409)
.+.+++| ..+|+++-+++.....+..+...+.|+|.+||
T Consensus 56 --~sl~~lp---~~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi 94 (447)
T TIGR02717 56 --PSVLEIP---DPVDLAVIVVPAKYVPQVVEECGEKGVKGAVV 94 (447)
T ss_pred --CCHHHCC---CCCCEEEEecCHHHHHHHHHHHHhcCCCEEEE
Confidence 2344444 25788888888777777777777788887765
No 191
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=71.62 E-value=5 Score=41.53 Aligned_cols=31 Identities=29% Similarity=0.549 Sum_probs=26.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|||.|.|+|++|+.+.+.|.++. .+++.|..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g---~~v~vid~ 31 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGEN---NDVTVIDT 31 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CcEEEEEC
Confidence 48999999999999999998754 68887854
No 192
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=71.49 E-value=20 Score=36.93 Aligned_cols=93 Identities=19% Similarity=0.216 Sum_probs=58.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~ 166 (409)
=+|+|.|+|-+|...++.+.... .+|+||.-..+...+|.-| |....++.+ +
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~g---a~Via~~~~~~K~e~a~~l-----------------GAd~~i~~~--------~ 219 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMG---AEVIAITRSEEKLELAKKL-----------------GADHVINSS--------D 219 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CeEEEEeCChHHHHHHHHh-----------------CCcEEEEcC--------C
Confidence 37999999999999888877553 6999997643333222211 111222221 1
Q ss_pred CCCCC-ccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 015291 167 PLQLP-WAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (409)
Q Consensus 167 p~~l~-W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISap 209 (409)
++.+. ..+ -+|++|++.+ ..+-+.+-+.++.|-.-|++-.|
T Consensus 220 ~~~~~~~~~-~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 220 SDALEAVKE-IADAIIDTVG-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred chhhHHhHh-hCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCC
Confidence 11111 111 1899999999 88888888888887766666555
No 193
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=71.47 E-value=5.6 Score=37.03 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=22.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
|||+|.|.|.||-.+.-++.+.. ++|+++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G---~~V~g~D 30 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG---HQVIGVD 30 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT---SEEEEE-
T ss_pred CEEEEECCCcchHHHHHHHHhCC---CEEEEEe
Confidence 69999999999999998888764 6888874
No 194
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=71.41 E-value=5.4 Score=42.82 Aligned_cols=30 Identities=27% Similarity=0.505 Sum_probs=24.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
-+|+|.|+|+|||.+++.+.... .+|++++
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~G---a~ViV~e 284 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFG---ARVVVTE 284 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 47999999999999999988654 5776664
No 195
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=71.38 E-value=6.7 Score=38.02 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.7
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~ 109 (409)
..||.|.|.|-+|-.+++.|....
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~G 34 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSG 34 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcC
Confidence 358999999999999999998653
No 196
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=71.25 E-value=8.3 Score=38.44 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=23.7
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
||+|.|.|.+|+.++..|..+.. .-+|+.++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~-~~ei~l~D 32 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGI-ADELVLID 32 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-CCEEEEEe
Confidence 89999999999999999887641 11555554
No 197
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=71.12 E-value=5.7 Score=43.55 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=29.6
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhh
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNA 127 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~ 127 (409)
..+|-|.||||+||.+.|.|.++. +++++|.. |++.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g---~~vvvID~--d~~~v 436 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANK---MRITVLER--DISAV 436 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCC---CCEEEEEC--CHHHH
Confidence 458999999999999999998764 68888864 44444
No 198
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=70.84 E-value=5.8 Score=40.07 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=29.7
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 015291 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 85 m~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~ 121 (409)
|.|+|-|.|||.||+..+|.|..+ +.+|+|+.=+.
T Consensus 1 m~~~vvqyGtG~vGv~air~l~ak--pe~elvgawv~ 35 (350)
T COG3804 1 MSLRVVQYGTGSVGVAAIRGLLAK--PELELVGAWVH 35 (350)
T ss_pred CCceeEEeccchHHHHHHHHHHcC--CCCceEEEEec
Confidence 678999999999999999998865 56999987654
No 199
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=70.14 E-value=35 Score=33.23 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=23.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
|||+|.|.|.||..+...|.+.. .+|..+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g---~~V~~~~ 30 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG---RDVTFLV 30 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC---CceEEEe
Confidence 48999999999999999988653 3444444
No 200
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=70.10 E-value=11 Score=38.09 Aligned_cols=95 Identities=21% Similarity=0.188 Sum_probs=49.6
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~-~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~ 166 (409)
+|.|+|.|.||...++++..+. . +|+++.. +.+.+..+.++ |- + -.++.+.-... +.
T Consensus 194 ~VlV~G~G~vG~~a~~lak~~G---~~~Vi~~~~--~~~r~~~a~~~----Ga---------~--~~i~~~~~~~~--~~ 251 (371)
T cd08281 194 SVAVVGLGGVGLSALLGAVAAG---ASQVVAVDL--NEDKLALAREL----GA---------T--ATVNAGDPNAV--EQ 251 (371)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCcEEEEcC--CHHHHHHHHHc----CC---------c--eEeCCCchhHH--HH
Confidence 6999999999999988877653 4 4665532 22333222221 10 0 01111100000 00
Q ss_pred CCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEE
Q 015291 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (409)
Q Consensus 167 p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVI 206 (409)
..++. ..++|+||||+|.-...+.+-..++.|.+-|++
T Consensus 252 i~~~~--~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 252 VRELT--GGGVDYAFEMAGSVPALETAYEITRRGGTTVTA 289 (371)
T ss_pred HHHHh--CCCCCEEEECCCChHHHHHHHHHHhcCCEEEEE
Confidence 00111 126899999999655555666677766643333
No 201
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=69.92 E-value=6.4 Score=39.17 Aligned_cols=31 Identities=23% Similarity=0.160 Sum_probs=25.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|||+|.|+|.+|+.+.+.|.... .+|...+.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G---~~V~~~~r 35 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANG---HRVRVWSR 35 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCC---CEEEEEeC
Confidence 68999999999999999998654 46665654
No 202
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=69.91 E-value=9.9 Score=38.57 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=19.8
Q ss_pred eeeEEEEcC-ChhHHHHHHHHHhC
Q 015291 86 KLKVAINGF-GRIGRNFLRCWHGR 108 (409)
Q Consensus 86 ~ikVaInGf-GrIGr~vlr~l~~~ 108 (409)
++||+|.|. |.||..++-.|..+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~ 25 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASG 25 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 469999996 99999999887754
No 203
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=69.89 E-value=28 Score=36.77 Aligned_cols=32 Identities=38% Similarity=0.564 Sum_probs=28.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~ 121 (409)
.||+|=|||.+|+..++.|.+.. -+||++.|.
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~G---Akvva~sds 239 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHELG---AKVVAVSDS 239 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHcC---CEEEEEEcC
Confidence 58999999999999999997654 599999986
No 204
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=69.79 E-value=13 Score=37.30 Aligned_cols=86 Identities=19% Similarity=0.106 Sum_probs=55.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~ 165 (409)
-||-|.| +|.+|+.+++.|.+..++ ++..||-... || + +.| ++++ +
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~g~~--~v~pVnp~~~---------~~--------~----------v~G--~~~y--~ 55 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAYGTN--IVGGVTPGKG---------GT--------T----------VLG--LPVF--N 55 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHCCCC--EEEEECCCCC---------CC--------e----------EeC--eecc--C
Confidence 4899999 999999999999865432 5556763100 01 1 222 2222 3
Q ss_pred CCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEE
Q 015291 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (409)
Q Consensus 166 ~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVI 206 (409)
+.+++|=.. ++|+++-+.+...-.+-.+...+.|+|.+||
T Consensus 56 sv~dlp~~~-~~DlAvi~vp~~~v~~~l~e~~~~gvk~avI 95 (291)
T PRK05678 56 TVAEAVEAT-GANASVIYVPPPFAADAILEAIDAGIDLIVC 95 (291)
T ss_pred CHHHHhhcc-CCCEEEEEcCHHHHHHHHHHHHHCCCCEEEE
Confidence 445555210 2899999998877777777788899988666
No 205
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=69.70 E-value=6.3 Score=43.45 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=27.0
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
.-+|-|.||||+||.+.|.|.++. +++++|..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g---~~vvvID~ 431 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSG---VKMTVLDH 431 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCC---CCEEEEEC
Confidence 347999999999999999998764 68888854
No 206
>PLN02572 UDP-sulfoquinovose synthase
Probab=69.25 E-value=8.9 Score=40.31 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=31.7
Q ss_pred cCCCCccccccceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 74 AGSVPVKKETVAKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 74 ~~~~~~~~~~~m~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
+++.+......+.+||-|-| .|.||+.+++.|.++. .+|+++.
T Consensus 35 ~~~~~~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G---~~V~~~d 78 (442)
T PLN02572 35 TPSAPGSSSSSKKKKVMVIGGDGYCGWATALHLSKRG---YEVAIVD 78 (442)
T ss_pred CCCCCCCCccccCCEEEEECCCcHHHHHHHHHHHHCC---CeEEEEe
Confidence 34444444444556899999 9999999999999764 5777764
No 207
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=69.15 E-value=5.6 Score=39.03 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=25.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
||||+|+|.+|+.+.+.|.+.. ++|+..|.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G---~~V~~~dr 30 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG---YQLHVTTI 30 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC---CeEEEEcC
Confidence 6999999999999999988754 68777754
No 208
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=69.09 E-value=7.8 Score=40.32 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=34.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhh
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL 131 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll 131 (409)
.||.|.| ||-||.+.|+.+...+ ..|+|+++.--...+.++-..
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~p-~~f~vval~ag~n~~~l~~q~ 46 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRNP-DKFEVVALAAGKNVELLAEQI 46 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhCC-CcEEEEEEecCCcHHHHHHHH
Confidence 4899999 9999999999998765 459999997654555554433
No 209
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=68.82 E-value=6.9 Score=38.80 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=24.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
.||+|+|+|.||+.+.+.|..... ..+|.+++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~-~~~V~~~d 38 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGL-AGEIVGAD 38 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCC-CcEEEEEE
Confidence 589999999999999999876531 12555554
No 210
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=68.58 E-value=6.3 Score=40.77 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=23.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
.+||.||||||+++.+++.... +.++.-.
T Consensus 148 TLgvlG~GrIGseVA~r~k~~g---m~vI~~d 176 (406)
T KOG0068|consen 148 TLGVLGLGRIGSEVAVRAKAMG---MHVIGYD 176 (406)
T ss_pred EEEEeecccchHHHHHHHHhcC---ceEEeec
Confidence 5999999999999999887643 5665543
No 211
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.89 E-value=11 Score=39.04 Aligned_cols=85 Identities=19% Similarity=0.352 Sum_probs=52.3
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCCC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~p 167 (409)
||.|.|.|.+|+.+++.|.++. .+|.+..+. .+. +.+ .+. ++ + .. ...+
T Consensus 5 ~i~iiGlG~~G~slA~~l~~~G---~~V~g~D~~--~~~---~~~----~~~--------------~~-~--~~--~~~~ 53 (418)
T PRK00683 5 RVVVLGLGVTGKSIARFLAQKG---VYVIGVDKS--LEA---LQS----CPY--------------IH-E--RY--LENA 53 (418)
T ss_pred eEEEEEECHHHHHHHHHHHHCC---CEEEEEeCC--ccc---cch----hHH--------------Hh-h--hh--cCCc
Confidence 7999999999999999998764 466555431 110 000 000 00 0 00 0112
Q ss_pred CCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeC
Q 015291 168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (409)
Q Consensus 168 ~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISa 208 (409)
+.++ .+.|+||-+.|.--..+.....++.|++ +++-
T Consensus 54 ~~~~---~~~dlvV~s~gi~~~~~~l~~A~~~g~~--vv~~ 89 (418)
T PRK00683 54 EEFP---EQVDLVVRSPGIKKEHPWVQAAIASHIP--VVTD 89 (418)
T ss_pred HHHh---cCCCEEEECCCCCCCcHHHHHHHHCCCc--EEEH
Confidence 2221 1579999999988778888899999984 5543
No 212
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=67.73 E-value=6.9 Score=38.21 Aligned_cols=102 Identities=26% Similarity=0.413 Sum_probs=59.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC---------CChhhhhhhh-cccccccccCceEEEecCCeEEECC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLL-KYDSLLGTFKADVKIVDNETISVDG 156 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~---------~~~~~~a~Ll-~yDS~~G~f~~~v~~~~~~~l~v~g 156 (409)
.+|+|=|||.+|+.+++.|.++. ..||+|.|. .+++.+..+. ++.+....++.. . .+ +
T Consensus 33 ~~v~IqGfG~VG~~~a~~l~~~G---a~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~-~--~~------~ 100 (244)
T PF00208_consen 33 KRVAIQGFGNVGSHAARFLAELG---AKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLE-S--PD------G 100 (244)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTT---EEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHT-C--SS------T
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccc-c--cc------c
Confidence 58999999999999999999874 689999663 1333332221 111100011100 0 00 0
Q ss_pred eEEEEEecCCCCCCCccccCccEEEeCC-CCCCChhhHHHHHHcCCCEEEEe
Q 015291 157 KLIKVVSNRDPLQLPWAELGIDIVIEGT-GVFVDGPGAGKHIQAGAKKVIIT 207 (409)
Q Consensus 157 k~I~v~~~~~p~~l~W~~~gvDiVle~T-G~f~s~e~a~~hl~aGakkVVIS 207 (409)
...+.. .+++ |. ..+||.+=|+ +.-++.+.++..++.||| +|+-
T Consensus 101 --~~~~~~--~~~i-l~-~~~DiliP~A~~~~I~~~~~~~~i~~~ak-iIve 145 (244)
T PF00208_consen 101 --AEYIPN--DDEI-LS-VDCDILIPCALGNVINEDNAPSLIKSGAK-IIVE 145 (244)
T ss_dssp --SEEECH--HCHG-GT-SSSSEEEEESSSTSBSCHHHCHCHHTT-S-EEEE
T ss_pred --eeEecc--cccc-cc-ccccEEEEcCCCCeeCHHHHHHHHhccCc-EEEe
Confidence 011111 0111 43 5899999887 778888888877888886 4553
No 213
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=67.23 E-value=51 Score=33.10 Aligned_cols=138 Identities=15% Similarity=0.139 Sum_probs=68.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~ 166 (409)
-+|.|+|.|.||..+++++..+. ..++++... .+....+++ .+|- + .. ++... +..
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~G---~~vi~~~~~--~~~~~~~~~---~~Ga---~-------~~-i~~~~-----~~~ 237 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAMG---HHVTVISSS--DKKREEALE---HLGA---D-------DY-LVSSD-----AAE 237 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC---CeEEEEeCC--HHHHHHHHH---hcCC---c-------EE-ecCCC-----hHH
Confidence 36889999999999998887654 466666542 222212221 1120 1 00 11100 000
Q ss_pred CCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEecCCccccCcCCCcEEecCCcchhhhH
Q 015291 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLA 246 (409)
Q Consensus 167 p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~~~dvP~vV~gVN~~~~~~~~~~IISnaSCTTn~La 246 (409)
...+. .++|+||||+|...+.+.+-..++.|.+-|.+..+.. .. .++...+-.....|.....++..-+.
T Consensus 238 ~~~~~---~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~--~~-----~~~~~~~~~~~~~i~g~~~~~~~~~~ 307 (357)
T PLN02514 238 MQEAA---DSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINT--PL-----QFVTPMLMLGRKVITGSFIGSMKETE 307 (357)
T ss_pred HHHhc---CCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCC--CC-----cccHHHHhhCCcEEEEEecCCHHHHH
Confidence 01111 1689999999965455556677777764444443321 11 22322221111456555445444455
Q ss_pred HHHHHHHhhcCcc
Q 015291 247 PFVKVMDEELGIV 259 (409)
Q Consensus 247 pvlk~L~~~fGI~ 259 (409)
-+++.+.+. .++
T Consensus 308 ~~~~~~~~g-~l~ 319 (357)
T PLN02514 308 EMLEFCKEK-GLT 319 (357)
T ss_pred HHHHHHHhC-CCc
Confidence 555555443 344
No 214
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=67.05 E-value=7.9 Score=38.09 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=24.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|||+|.|.|.+|..+...|.... .+|..++.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g---~~V~~~~r 32 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNG---HDVTLWAR 32 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEEC
Confidence 58999999999999999998653 46655553
No 215
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=66.26 E-value=25 Score=35.47 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=23.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+|.|.|.|.||...++++..+. .+++++..
T Consensus 186 ~VlV~G~G~vG~~avq~Ak~~G---a~vi~~~~ 215 (360)
T PLN02586 186 HLGVAGLGGLGHVAVKIGKAFG---LKVTVISS 215 (360)
T ss_pred EEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 6899999999999998877654 46666543
No 216
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=66.19 E-value=52 Score=32.76 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=23.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
+|.|.|.|.||..+++++.... ..|+++.
T Consensus 169 ~VlV~G~G~vG~~a~~~a~~~G---~~vi~~~ 197 (349)
T TIGR03201 169 LVIVIGAGGVGGYMVQTAKAMG---AAVVAID 197 (349)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CeEEEEc
Confidence 6999999999999998887653 4676664
No 217
>PLN02494 adenosylhomocysteinase
Probab=65.82 E-value=8.2 Score=41.46 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=25.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
-+|+|.|+|.||+.+++.+.... .+|++++.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~G---a~VIV~e~ 285 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAG---ARVIVTEI 285 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 47999999999999999987653 57777653
No 218
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=65.32 E-value=9.5 Score=37.46 Aligned_cols=34 Identities=12% Similarity=0.317 Sum_probs=25.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC-CCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~-~~~~~vVaInd 120 (409)
+||+|.|+|.+|..+.+.|.+.. .+..+|++++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r 36 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSS 36 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence 58999999999999999988653 11246766664
No 219
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=64.83 E-value=9.3 Score=41.29 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=28.0
Q ss_pred cceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 84 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 84 ~m~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
.++=+|-|.|+|++||.+.|.|.++. .+++.|..
T Consensus 415 ~~~~hiiI~G~G~~G~~la~~L~~~g---~~vvvId~ 448 (558)
T PRK10669 415 DICNHALLVGYGRVGSLLGEKLLAAG---IPLVVIET 448 (558)
T ss_pred ccCCCEEEECCChHHHHHHHHHHHCC---CCEEEEEC
Confidence 34457999999999999999998764 68888865
No 220
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=64.83 E-value=38 Score=35.07 Aligned_cols=88 Identities=23% Similarity=0.341 Sum_probs=52.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhh---hhhcccccccccCceEEEecCCeEEECCeEEEEEec
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNAS---HLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a---~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~ 164 (409)
||.|.|.|.+|+.++|.|.++. .+|. +.|....+... .+++. -.| +.+...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G---~~V~-~sD~~~~~~~~~~~~~~~~--------------------~~g--i~~~~g 54 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKG---AEVT-VTDLKPNEELEPSMGQLRL--------------------NEG--SVLHTG 54 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCC---CEEE-EEeCCCCccchhHHHHHhh--------------------ccC--cEEEec
Confidence 5899999999999999998775 4544 45531111110 01110 001 122212
Q ss_pred CCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEe
Q 015291 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (409)
Q Consensus 165 ~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVIS 207 (409)
.+++++. +.|+|+=+.|.-.+.+......+.|. -|++
T Consensus 55 ~~~~~~~----~~d~vv~sp~i~~~~p~~~~a~~~~i--~i~~ 91 (433)
T TIGR01087 55 LHLEDLN----NADLVVKSPGIPPDHPLVQAAAKRGI--PVVG 91 (433)
T ss_pred CchHHhc----cCCEEEECCCCCCCCHHHHHHHHCCC--cEEE
Confidence 2344442 57999999999777776777777787 3554
No 221
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=64.65 E-value=8.1 Score=40.07 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=25.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|||||.|.|.+|..+...|.+.. .+|++++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G---~~V~~~d~ 31 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLG---HEVTGVDI 31 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcC---CeEEEEEC
Confidence 48999999999999999998764 57777753
No 222
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=64.30 E-value=11 Score=34.88 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=22.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
||||+|.|.+|+.+...+.... ++|+-+.-
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G---~~V~l~d~ 30 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG---YEVTLYDR 30 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT---SEEEEE-S
T ss_pred CEEEEcCCHHHHHHHHHHHhCC---CcEEEEEC
Confidence 7999999999999998888764 67665543
No 223
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=64.22 E-value=8.9 Score=37.71 Aligned_cols=31 Identities=23% Similarity=0.502 Sum_probs=26.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|||-|.| .|.||+.+.+.|.++. +++++++.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~---~~v~~~~r 32 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERG---YEVIATSR 32 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTS---EEEEEEST
T ss_pred CEEEEECCCCHHHHHHHHHHhhCC---CEEEEeCc
Confidence 6999999 9999999999998753 78888853
No 224
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.12 E-value=42 Score=34.99 Aligned_cols=106 Identities=21% Similarity=0.255 Sum_probs=59.6
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCC-hhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEe-cC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGG-VKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS-NR 165 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~-~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~-~~ 165 (409)
-|+|.|.|.+|+.++|.|.++. .+|. +.|... ......|. . . .-| +.+.. ..
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G---~~v~-~~D~~~~~~~~~~l~----------------~-~---~~g--~~~~~~~~ 61 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQG---IPFA-VMDSREQPPGLDTLA----------------R-E---FPD--VELRCGGF 61 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCC---CeEE-EEeCCCCchhHHHHH----------------h-h---cCC--cEEEeCCC
Confidence 4899999999999999998774 4544 455311 11111110 0 0 001 22211 23
Q ss_pred CCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCC-eEEecCCcc
Q 015291 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIP-TYVVGVNEK 225 (409)
Q Consensus 166 ~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps---~~~dvP-~vV~gVN~~ 225 (409)
+++.+. +.|+|+-+.|.-.+.+......+.|. -|++-.- .-...| .-|-|-|.+
T Consensus 62 ~~~~~~----~~d~vV~sp~i~~~~p~~~~a~~~~i--~i~~~~el~~~~~~~~~I~VTGT~GK 119 (448)
T PRK03803 62 DCELLV----QASEIIISPGLALDTPALRAAAAMGI--EVIGDIELFAREAKAPVIAITGSNGK 119 (448)
T ss_pred ChHHhc----CCCEEEECCCCCCCCHHHHHHHHCCC--cEEEHHHHHHHhcCCCEEEEECCCcH
Confidence 444442 57999999998777777777777777 3565221 000123 456677765
No 225
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=63.97 E-value=58 Score=30.66 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=24.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
-||-|+|.|.||...++.|.+.. -+|+.|+.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~g---a~V~VIs~ 41 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYG---AHIVVISP 41 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CeEEEEcC
Confidence 38999999999999999888764 35666664
No 226
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=63.89 E-value=11 Score=35.66 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=23.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
|||+|.| +|.+|..+.+.|.+.. .+|+..+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G---~~V~v~~ 31 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG---NKIIIGS 31 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC---CEEEEEE
Confidence 4899997 9999999999998753 3555454
No 227
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=63.70 E-value=16 Score=36.72 Aligned_cols=31 Identities=26% Similarity=0.248 Sum_probs=23.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~-~vVaInd 120 (409)
-+|.|.|.|.||..+++++..+. . +|+++..
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~G---~~~vi~~~~ 220 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIRG---ASRIIGVDL 220 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEcC
Confidence 37999999999999999887653 4 5666643
No 228
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=63.58 E-value=10 Score=37.04 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=25.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC-CCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~-~~~~~vVaInd 120 (409)
|||+|+|.|.+|+.+++.|.... ....+|+..|.
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r 38 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNR 38 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence 58999999999999999998653 11245665553
No 229
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=63.40 E-value=9.5 Score=37.89 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=24.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
|||||+|.|++|..+.+.|.... ++|...|
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G---~~v~v~~ 30 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAG---HQLHVTT 30 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC---CeEEEEe
Confidence 37999999999999999998653 5665454
No 230
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.22 E-value=39 Score=35.83 Aligned_cols=86 Identities=24% Similarity=0.307 Sum_probs=51.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEec-CC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN-RD 166 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~-~~ 166 (409)
||.|.|+|..|+.+++.|..+. .+|.+. |. .......++. . .| +.+... .+
T Consensus 17 ~v~v~G~G~sG~a~a~~L~~~G---~~V~~~-D~-~~~~~~~~l~----------------~-----~g--i~~~~~~~~ 68 (473)
T PRK00141 17 RVLVAGAGVSGRGIAAMLSELG---CDVVVA-DD-NETARHKLIE----------------V-----TG--VADISTAEA 68 (473)
T ss_pred eEEEEccCHHHHHHHHHHHHCC---CEEEEE-CC-ChHHHHHHHH----------------h-----cC--cEEEeCCCc
Confidence 7999999999999999998764 455444 42 1111111111 0 01 122222 12
Q ss_pred CCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEe
Q 015291 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (409)
Q Consensus 167 p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVIS 207 (409)
+++++ +.|+||-+.|.--+........+.|. .|++
T Consensus 69 ~~~~~----~~d~vV~Spgi~~~~p~~~~a~~~gi--~v~~ 103 (473)
T PRK00141 69 SDQLD----SFSLVVTSPGWRPDSPLLVDAQSQGL--EVIG 103 (473)
T ss_pred hhHhc----CCCEEEeCCCCCCCCHHHHHHHHCCC--ceee
Confidence 33332 67999999998777776777777776 3454
No 231
>PRK05865 hypothetical protein; Provisional
Probab=62.84 E-value=23 Score=40.74 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=25.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|||.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G---~~Vv~l~R 32 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQG---HEVVGIAR 32 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc---CEEEEEEC
Confidence 4899999 8999999999998764 57777754
No 232
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=62.80 E-value=4.7 Score=37.08 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.5
Q ss_pred eEEEEcCChhHHHHHHHHHhCC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~ 109 (409)
||+|.|.|-+|-.++..|....
T Consensus 1 ~VlViG~GglGs~ia~~La~~G 22 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG 22 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcC
Confidence 6899999999999999988654
No 233
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=62.71 E-value=10 Score=39.93 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=24.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
-+|+|.|+|.||+.+++.+.... .+|+++.
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~G---a~ViV~d 225 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMG---ARVIVTE 225 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCc---CEEEEEe
Confidence 48999999999999999888653 5777664
No 234
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=62.62 E-value=34 Score=35.88 Aligned_cols=87 Identities=17% Similarity=0.236 Sum_probs=51.9
Q ss_pred eeEEEEcCChhHHH-HHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecC
Q 015291 87 LKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (409)
Q Consensus 87 ikVaInGfGrIGr~-vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~ 165 (409)
.||.|.|.|..|+. ++|.|.++. .+|. +.|....+....|.+ . | +.+....
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G---~~V~-~~D~~~~~~~~~l~~-----------------~-----g--i~~~~~~ 59 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLG---YKVS-GSDLKESAVTQRLLE-----------------L-----G--AIIFIGH 59 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCC---CeEE-EECCCCChHHHHHHH-----------------C-----C--CEEeCCC
Confidence 37999999999999 799998775 4654 455422112222111 0 1 1121122
Q ss_pred CCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEe
Q 015291 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (409)
Q Consensus 166 ~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVIS 207 (409)
+++.++ +.|+|+=+.|.-.+.+......+.|. -|++
T Consensus 60 ~~~~~~----~~d~vv~spgi~~~~~~~~~a~~~~i--~i~~ 95 (461)
T PRK00421 60 DAENIK----DADVVVYSSAIPDDNPELVAARELGI--PVVR 95 (461)
T ss_pred CHHHCC----CCCEEEECCCCCCCCHHHHHHHHCCC--cEEe
Confidence 333332 57899999998877766666666776 3454
No 235
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=62.43 E-value=13 Score=35.82 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=25.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|+++|.|+|.||..+.+.|.... .||+-.+.
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag---~eV~igs~ 32 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAG---HEVIIGSS 32 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCC---CeEEEecC
Confidence 68999999999999999998653 57665543
No 236
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=62.35 E-value=4.4 Score=38.66 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=20.9
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~ 109 (409)
..||.|.|.|-+|-.+++.|....
T Consensus 21 ~~~VlivG~GglGs~va~~La~~G 44 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAG 44 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC
Confidence 358999999999999999998654
No 237
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.31 E-value=46 Score=35.35 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=23.3
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaI 118 (409)
||.|.|.|..|+.++|.|..+. .+|.+.
T Consensus 9 ~i~v~G~G~sG~s~a~~L~~~G---~~v~~~ 36 (498)
T PRK02006 9 MVLVLGLGESGLAMARWCARHG---ARLRVA 36 (498)
T ss_pred EEEEEeecHhHHHHHHHHHHCC---CEEEEE
Confidence 7999999999999999998764 466543
No 238
>PRK07201 short chain dehydrogenase; Provisional
Probab=61.99 E-value=44 Score=36.27 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=25.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~ 121 (409)
|||-|-| +|-||+.+++.|.... ...+|.++...
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~-~g~~V~~l~R~ 35 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRR-REATVHVLVRR 35 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcC-CCCEEEEEECc
Confidence 4799999 9999999999998421 12577777653
No 239
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=61.82 E-value=23 Score=37.41 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=22.0
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCC
Q 015291 86 KLKVAING-FGRIGRNFLRCWHGRK 109 (409)
Q Consensus 86 ~ikVaInG-fGrIGr~vlr~l~~~~ 109 (409)
+..|.+.| +|++||.+.+.|.+|.
T Consensus 79 ~~~VlVvGatG~vG~~iv~~llkrg 103 (411)
T KOG1203|consen 79 PTTVLVVGATGKVGRRIVKILLKRG 103 (411)
T ss_pred CCeEEEecCCCchhHHHHHHHHHCC
Confidence 46899999 9999999999999886
No 240
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=61.46 E-value=11 Score=38.69 Aligned_cols=31 Identities=35% Similarity=0.374 Sum_probs=24.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
.+|||+|+|.+|+.+++.|.... ++|+..+.
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG---~~Vvv~~r 48 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSG---VDVVVGLR 48 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCC---CEEEEEEC
Confidence 47999999999999999987653 67765443
No 241
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=60.75 E-value=12 Score=37.48 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=25.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|||+|.|.|.+|..+...|.... .+|..++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G---~~V~~~~r 35 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKG---VPVRLWAR 35 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC---CeEEEEeC
Confidence 58999999999999999988654 56766665
No 242
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=60.68 E-value=34 Score=38.88 Aligned_cols=82 Identities=17% Similarity=0.155 Sum_probs=49.2
Q ss_pred eEEEEcCChhHHHH-HHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 015291 88 KVAINGFGRIGRNF-LRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (409)
Q Consensus 88 kVaInGfGrIGr~v-lr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~ 166 (409)
+|.|.|.|..|+.. +|.|..+. .+|. +.|....+.+..|-+ . | +.++...+
T Consensus 6 ~i~viG~G~sG~salA~~L~~~G---~~V~-~sD~~~~~~~~~L~~-----------------~-----g--i~~~~g~~ 57 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDRG---YSVS-GSDLSEGKTVEKLKA-----------------K-----G--ARFFLGHQ 57 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHCC---CeEE-EECCCCChHHHHHHH-----------------C-----C--CEEeCCCC
Confidence 59999999999998 88888764 4654 456422222222211 0 1 11211122
Q ss_pred CCCCCccccCccEEEeCCCCCCChhhHHHHHHcCC
Q 015291 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (409)
Q Consensus 167 p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGa 201 (409)
++.++ +.|+|+-+.|.-.+.+......+.|.
T Consensus 58 ~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~gi 88 (809)
T PRK14573 58 EEHVP----EDAVVVYSSSISKDNVEYLSAKSRGN 88 (809)
T ss_pred HHHcC----CCCEEEECCCcCCCCHHHHHHHHCCC
Confidence 33332 57999999998877666666666665
No 243
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=60.58 E-value=4.3 Score=38.62 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=20.7
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~ 109 (409)
..||+|.|.|-+|-.++..|....
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~G 51 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSG 51 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 358999999999999999998654
No 244
>PLN02778 3,5-epimerase/4-reductase
Probab=60.39 E-value=13 Score=36.71 Aligned_cols=30 Identities=30% Similarity=0.339 Sum_probs=24.7
Q ss_pred cceeeEEEEc-CChhHHHHHHHHHhCCCCCceEE
Q 015291 84 VAKLKVAING-FGRIGRNFLRCWHGRKDSPLDVV 116 (409)
Q Consensus 84 ~m~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vV 116 (409)
.++|||-|-| .|.||+.+++.|.++. .+|+
T Consensus 7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g---~~V~ 37 (298)
T PLN02778 7 SATLKFLIYGKTGWIGGLLGKLCQEQG---IDFH 37 (298)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHhCC---CEEE
Confidence 4457999999 9999999999998764 4654
No 245
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=60.31 E-value=43 Score=36.36 Aligned_cols=31 Identities=19% Similarity=0.078 Sum_probs=24.4
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
.-||.|.|.|.||...++.+.... -+|+++.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lG---A~V~a~D 195 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLG---AIVRAFD 195 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC---CEEEEEe
Confidence 468999999999999999887664 2555553
No 246
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=60.12 E-value=24 Score=36.11 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=20.8
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~ 109 (409)
..||.|+|.|.+|..+++.|....
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aG 47 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAG 47 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC
Confidence 358999999999999999998654
No 247
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=59.93 E-value=13 Score=37.09 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=20.8
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~ 109 (409)
+|||+|+|.|.||..+...|.+..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g 28 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG 28 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC
Confidence 469999999999999998887653
No 248
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=59.84 E-value=21 Score=37.04 Aligned_cols=90 Identities=19% Similarity=0.151 Sum_probs=49.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEE-EEEecC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLI-KVVSNR 165 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I-~v~~~~ 165 (409)
-.|+|.|.|-||-..+.-+..... =.|+||.-. .+.+..-.++--|| .||.++. .+.+
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~agA--~~IiAvD~~--~~Kl~~A~~fGAT~---------------~vn~~~~~~vv~-- 245 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAGA--GRIIAVDIN--PEKLELAKKFGATH---------------FVNPKEVDDVVE-- 245 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcCC--ceEEEEeCC--HHHHHHHHhcCCce---------------eecchhhhhHHH--
Confidence 369999999999988876654322 377777432 22222223322222 1343332 1211
Q ss_pred CCCCCCccccCccEEEeCCCCCCChhhHHHHHHc
Q 015291 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQA 199 (409)
Q Consensus 166 ~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~a 199 (409)
...++ | +.|+|++|||+|.-...+.+-.....
T Consensus 246 ~i~~~-T-~gG~d~~~e~~G~~~~~~~al~~~~~ 277 (366)
T COG1062 246 AIVEL-T-DGGADYAFECVGNVEVMRQALEATHR 277 (366)
T ss_pred HHHHh-c-CCCCCEEEEccCCHHHHHHHHHHHhc
Confidence 01111 2 24899999999987655544433333
No 249
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=59.79 E-value=13 Score=36.56 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=25.2
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
||||+|.|.+|..+++.+.... ++|+.++.
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G---~~V~~~d~ 35 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAG---MDVWLLDS 35 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcC---CeEEEEeC
Confidence 6999999999999999988654 68776754
No 250
>PRK07680 late competence protein ComER; Validated
Probab=59.77 E-value=14 Score=36.03 Aligned_cols=22 Identities=14% Similarity=0.443 Sum_probs=19.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGR 108 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~ 108 (409)
|||+|+|.|.+|+.+++.|.+.
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~ 22 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES 22 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC
Confidence 4799999999999999998765
No 251
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=59.77 E-value=11 Score=38.86 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=24.7
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 86 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
..||+|+| +|.+|+.+.+.|.... .+|..++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G---~~V~~~d 129 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSG---YQVRILE 129 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCC---CeEEEeC
Confidence 36899999 9999999999998754 4655554
No 252
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.66 E-value=54 Score=34.50 Aligned_cols=108 Identities=21% Similarity=0.236 Sum_probs=59.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecC-C
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR-D 166 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~-~ 166 (409)
||+|.|+|+.|+.+++.|..+. .+|. +.|..+.....-+++ .|.-.| +.+.... .
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G---~~V~-~~D~~~~~~~~~~~~------------------~l~~~g--i~~~~~~~~ 71 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLG---AKVT-AFDKKSEEELGEVSN------------------ELKELG--VKLVLGENY 71 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCC---CEEE-EECCCCCccchHHHH------------------HHHhCC--CEEEeCCCC
Confidence 7999999999999999998764 4544 344311100000000 000011 1121111 1
Q ss_pred CCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCC-eEEecCCcc
Q 015291 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIP-TYVVGVNEK 225 (409)
Q Consensus 167 p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps---~~~dvP-~vV~gVN~~ 225 (409)
++.+. +.|+||-+.|.-.+.+......+.|.+ |++-.- .....| .-|-|-|.+
T Consensus 72 ~~~~~----~~dlVV~Spgi~~~~p~~~~a~~~~i~--i~s~~e~~~~~~~~~vIaITGTnGK 128 (458)
T PRK01710 72 LDKLD----GFDVIFKTPSMRIDSPELVKAKEEGAY--ITSEMEEFIKYCPAKVFGVTGSDGK 128 (458)
T ss_pred hHHhc----cCCEEEECCCCCCCchHHHHHHHcCCc--EEechHHhhhhcCCCEEEEECCCCH
Confidence 23331 579999999988887777777788873 565321 111223 345677765
No 253
>PRK06444 prephenate dehydrogenase; Provisional
Probab=59.54 E-value=11 Score=35.72 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGR 108 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~ 108 (409)
|||+|+| .|+.||.+.+.+...
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~ 23 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN 23 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC
Confidence 4899999 899999999988654
No 254
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=59.46 E-value=12 Score=39.08 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=26.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+||+|.|.|.+|-.+...|.++. .+|++++-
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G---~~V~~~D~ 34 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ---KQVIGVDI 34 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC---CEEEEEeC
Confidence 68999999999999999998764 58888764
No 255
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.21 E-value=40 Score=35.75 Aligned_cols=89 Identities=21% Similarity=0.277 Sum_probs=52.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCCC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~p 167 (409)
||+|.|+|+-|+..+|.|..+. .+++ +.|....+...... +.. .+ + ..++...++
T Consensus 10 ~v~v~G~G~sG~~~~~~l~~~g---~~v~-~~d~~~~~~~~~~~-----------~l~--~~------~--~~~~~~~~~ 64 (468)
T PRK04690 10 RVALWGWGREGRAAYRALRAHL---PAQA-LTLFCNAVEAREVG-----------ALA--DA------A--LLVETEASA 64 (468)
T ss_pred EEEEEccchhhHHHHHHHHHcC---CEEE-EEcCCCcccchHHH-----------HHh--hc------C--EEEeCCCCh
Confidence 7999999999999999999764 4543 45531111000000 000 01 1 111122223
Q ss_pred CCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEe
Q 015291 168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (409)
Q Consensus 168 ~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVIS 207 (409)
+.+. ++|+||-+.|.-.+.+......+.|. -|++
T Consensus 65 ~~~~----~~d~vV~SpgI~~~~p~~~~a~~~~i--~i~~ 98 (468)
T PRK04690 65 QRLA----AFDVVVKSPGISPYRPEALAAAARGT--PFIG 98 (468)
T ss_pred HHcc----CCCEEEECCCCCCCCHHHHHHHHcCC--cEEE
Confidence 3332 68999999999888777777777777 3554
No 256
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=58.84 E-value=13 Score=34.97 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=26.5
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
++|.|.| +|.||+.+++.|.++. .+|+++..
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~---~~v~~~~r 32 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARG---HEVRAAVR 32 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCC---CEEEEEEe
Confidence 4799999 9999999999999874 57777775
No 257
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=58.22 E-value=37 Score=33.92 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=23.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCce-EEEEe
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN 119 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~-vVaIn 119 (409)
-+|.|.|.|.||..+++++..+. .+ |+++.
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~G---~~~Vi~~~ 208 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALAG---ASKIIAVD 208 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEc
Confidence 37999999999999988877653 43 66664
No 258
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.07 E-value=77 Score=32.88 Aligned_cols=103 Identities=20% Similarity=0.335 Sum_probs=59.8
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCC-hhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEec-C
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGG-VKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN-R 165 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~-~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~-~ 165 (409)
||.|.|.|..|+..++.|..+. .+|.+. |... ..... .|. .| +.++.. .
T Consensus 8 ~i~v~G~G~sG~s~~~~l~~~G---~~v~~~-D~~~~~~~~~----------------------~l~-~g--~~~~~~~~ 58 (438)
T PRK03806 8 KVVIIGLGLTGLSCVDFFLARG---VTPRVI-DTRITPPGLD----------------------KLP-EN--VERHTGSL 58 (438)
T ss_pred EEEEEeeCHHHHHHHHHHHHCC---CeEEEE-cCCCCchhHH----------------------HHh-cC--CEEEeCCC
Confidence 7999999999999999887654 465543 4211 00000 010 01 112111 1
Q ss_pred CCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCCe-EEecCCcc
Q 015291 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPT-YVVGVNEK 225 (409)
Q Consensus 166 ~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps---~~~dvP~-vV~gVN~~ 225 (409)
++..+ . +.|+||-+.|.-.+.+....+.+.|+. |++-+. .--+.|+ -|-|-|.+
T Consensus 59 ~~~~~--~--~~d~vv~spgi~~~~~~~~~a~~~g~~--v~~~~el~~~~~~~~~I~VTGTnGK 116 (438)
T PRK03806 59 NDEWL--L--AADLIVASPGIALAHPSLSAAADAGIE--IVGDIELFCREAQAPIVAITGSNGK 116 (438)
T ss_pred CHHHh--c--CCCEEEECCCCCCCCHHHHHHHHCCCe--EEEHHHHHhhhcCCCEEEEeCCCCH
Confidence 22222 2 568999999998787888888889984 565321 1012354 36788865
No 259
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=57.90 E-value=14 Score=36.82 Aligned_cols=31 Identities=29% Similarity=0.322 Sum_probs=25.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+||+|+|.|.+|..+...|..+. .+|+.++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G---~~V~v~d~ 33 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAG---HEVRLWDA 33 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCC---CeeEEEeC
Confidence 48999999999999999988764 57776754
No 260
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=57.79 E-value=13 Score=36.79 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=25.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
.||+|.|.|.+|..+.+.|.+.. .+|...|.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G---~~V~v~d~ 32 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG---HQLQVFDV 32 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC---CeEEEEcC
Confidence 38999999999999999998654 57766654
No 261
>PLN02740 Alcohol dehydrogenase-like
Probab=57.64 E-value=21 Score=36.22 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=23.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEe
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~-~vVaIn 119 (409)
+|.|+|.|.||..+++++..+. . +|+++.
T Consensus 201 ~VlV~G~G~vG~~a~q~ak~~G---~~~Vi~~~ 230 (381)
T PLN02740 201 SVAIFGLGAVGLAVAEGARARG---ASKIIGVD 230 (381)
T ss_pred EEEEECCCHHHHHHHHHHHHCC---CCcEEEEc
Confidence 7999999999999999887653 4 466664
No 262
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=57.27 E-value=9.5 Score=37.08 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=20.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGR 108 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~ 108 (409)
|||+|.|+|.+|..+++.|.+.
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~ 25 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS 25 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC
Confidence 5899999999999999999865
No 263
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.06 E-value=51 Score=34.16 Aligned_cols=88 Identities=30% Similarity=0.456 Sum_probs=51.5
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCC--h-hhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEec
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGG--V-KNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~--~-~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~ 164 (409)
+|.|.|.|++|+.+++.|.++. .+|+. .|... . .....|-+ .+ +.+...
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G---~~V~~-~d~~~~~~~~~~~~l~~---------------~g---------~~~~~~ 58 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLG---ANVTV-NDGKPFSENPEAQELLE---------------EG---------IKVICG 58 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCC---CEEEE-EcCCCccchhHHHHHHh---------------cC---------CEEEeC
Confidence 6899999999999999998764 46554 44311 1 11111110 01 111111
Q ss_pred CCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEe
Q 015291 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (409)
Q Consensus 165 ~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVIS 207 (409)
.++.++. +.+.|+|+-+.|...+........+.|. .|++
T Consensus 59 ~~~~~~~--~~~~d~vV~s~gi~~~~~~~~~a~~~~i--~v~~ 97 (447)
T PRK02472 59 SHPLELL--DEDFDLMVKNPGIPYTNPMVEKALEKGI--PIIT 97 (447)
T ss_pred CCCHHHh--cCcCCEEEECCCCCCCCHHHHHHHHCCC--cEEe
Confidence 2222211 1147999999998877777777777877 4554
No 264
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=56.77 E-value=37 Score=33.44 Aligned_cols=93 Identities=14% Similarity=0.142 Sum_probs=50.8
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCCC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~p 167 (409)
+|.|.|.|.+|+.+++++..+. .+++++... .+.+..+-++.. +. .++.++-.+. +..
T Consensus 166 ~vlV~g~g~iG~~~~~~a~~~G---~~vi~~~~~--~~~~~~~~~~g~--------------~~-~i~~~~~~~~--~~~ 223 (333)
T cd08296 166 LVAVQGIGGLGHLAVQYAAKMG---FRTVAISRG--SDKADLARKLGA--------------HH-YIDTSKEDVA--EAL 223 (333)
T ss_pred EEEEECCcHHHHHHHHHHHHCC---CeEEEEeCC--hHHHHHHHHcCC--------------cE-EecCCCccHH--HHH
Confidence 6899999999999999888764 467666542 222222222110 01 1221110110 001
Q ss_pred CCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEE
Q 015291 168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (409)
Q Consensus 168 ~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVI 206 (409)
. .|. ++|++|+++|.-...+.+..++..+..-|.+
T Consensus 224 ~--~~~--~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 224 Q--ELG--GAKLILATAPNAKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred H--hcC--CCCEEEECCCchHHHHHHHHHcccCCEEEEE
Confidence 1 122 6899999987544555666777666543334
No 265
>PRK06545 prephenate dehydrogenase; Validated
Probab=56.52 E-value=14 Score=37.67 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=23.2
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaI 118 (409)
||+|+|+|.||..+.+.|.... .++.+...
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G-~~v~i~~~ 31 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAG-PDVFIIGY 31 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcC-CCeEEEEe
Confidence 6999999999999999998654 23444443
No 266
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=56.49 E-value=16 Score=35.92 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=24.8
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
||+|+|.|.+|+.+...+..+. ++|+.++.
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G---~~V~l~d~ 34 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTG---YDVTIVDV 34 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcC---CeEEEEeC
Confidence 6999999999999999988764 57776653
No 267
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=56.47 E-value=15 Score=37.21 Aligned_cols=31 Identities=29% Similarity=0.308 Sum_probs=24.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
.||||+|+|.+|+.+++.|.... ++++...+
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG---~~Viv~~~ 34 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSG---LNVIVGLR 34 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCC---CeEEEEEC
Confidence 47999999999999999998653 56654444
No 268
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=56.25 E-value=6.5 Score=38.19 Aligned_cols=101 Identities=15% Similarity=0.177 Sum_probs=50.3
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC-CCChhhhhhhhccc-ccccccCceEEEecCCeEEEC-CeEEEEEec
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND-SGGVKNASHLLKYD-SLLGTFKADVKIVDNETISVD-GKLIKVVSN 164 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd-~~~~~~~a~Ll~yD-S~~G~f~~~v~~~~~~~l~v~-gk~I~v~~~ 164 (409)
||.|+|.|-+|-.+++.|.....+.+.| |.+ ..+...+-.-+-|+ ...|+.+.++-.+ .--.+| +-+|....+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~i--vD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~--~l~~~np~v~i~~~~~ 76 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHV--IDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAE--AVNDRNPNCKVVPYQN 76 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEE--EeCCEEcchhhccccCCChhhCChHHHHHHHH--HHHHHCCCCEEEEEec
Confidence 6899999999999999998665443443 332 12333333322222 2235544333210 000011 111222111
Q ss_pred C--CCCCCC---ccccCccEEEeCCCCCCChhhHH
Q 015291 165 R--DPLQLP---WAELGIDIVIEGTGVFVDGPGAG 194 (409)
Q Consensus 165 ~--~p~~l~---W~~~gvDiVle~TG~f~s~e~a~ 194 (409)
+ +...++ |+ +.|+|++|+..+..+.+.-
T Consensus 77 ~i~~~~~~~~~f~~--~~DvVi~a~Dn~~aR~~ln 109 (234)
T cd01484 77 KVGPEQDFNDTFFE--QFHIIVNALDNIIARRYVN 109 (234)
T ss_pred cCChhhhchHHHHh--CCCEEEECCCCHHHHHHHH
Confidence 1 001111 33 7899999998876655443
No 269
>PRK06988 putative formyltransferase; Provisional
Probab=56.02 E-value=15 Score=37.09 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=25.4
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 015291 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (409)
Q Consensus 85 m~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaI 118 (409)
|+|||.+.|++.+|...|+.|.++. ++|++|
T Consensus 1 ~~mkIvf~Gs~~~a~~~L~~L~~~~---~~i~~V 31 (312)
T PRK06988 1 MKPRAVVFAYHNVGVRCLQVLLARG---VDVALV 31 (312)
T ss_pred CCcEEEEEeCcHHHHHHHHHHHhCC---CCEEEE
Confidence 4579999999999999999998753 566555
No 270
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=55.89 E-value=16 Score=35.88 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=24.0
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
||+|+|.|.+|+.+...|.... .+|+.++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G---~~V~~~d 31 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSG---FQTTLVD 31 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCC---CcEEEEe
Confidence 7999999999999999988654 4666564
No 271
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=55.81 E-value=16 Score=36.49 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=20.0
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhC
Q 015291 85 AKLKVAINGFGRIGRNFLRCWHGR 108 (409)
Q Consensus 85 m~ikVaInGfGrIGr~vlr~l~~~ 108 (409)
|.|||+|+|.|.||-.+.-.|.+.
T Consensus 1 ~~m~I~IiGaGaiG~~~a~~L~~~ 24 (305)
T PRK05708 1 MSMTWHILGAGSLGSLWACRLARA 24 (305)
T ss_pred CCceEEEECCCHHHHHHHHHHHhC
Confidence 457999999999999888777654
No 272
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=55.76 E-value=16 Score=36.26 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=26.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC-CCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~-~~~~~vVaInd 120 (409)
+|||+.|+|.+|+.+++-|.+.. -+..+|...|.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~ 36 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR 36 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC
Confidence 58999999999999999998764 22346655554
No 273
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=55.74 E-value=15 Score=39.26 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=25.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+||||+|.|.+|..+...+.... ++|...+-
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G---~~V~v~D~ 35 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAG---IDVAVFDP 35 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC---CeEEEEeC
Confidence 58999999999999999888654 57765553
No 274
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=55.51 E-value=6.1 Score=40.09 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.5
Q ss_pred eEEEEcCChhHHHHHHHHHhCC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~ 109 (409)
||.|+|.|-+|-.+++.|....
T Consensus 1 kVLIvGaGGLGs~vA~~La~aG 22 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWG 22 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcC
Confidence 6899999999999999998654
No 275
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=55.09 E-value=53 Score=31.95 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=23.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
-+|.|.|.|-+|+.+++++..+. ++|+++..
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~G---~~v~~~~~ 194 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAMG---FETVAITR 194 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 36899998889999988887654 57766654
No 276
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=54.95 E-value=20 Score=32.39 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=25.9
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+.||.|.|.|++|+..++++.... .+++.+.+
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lG---a~v~~~d~ 51 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLG---AEVVVPDE 51 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT----EEEEEES
T ss_pred CeEEEEECCCHHHHHHHHHHhHCC---CEEEeccC
Confidence 579999999999999999998875 67776755
No 277
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=54.27 E-value=17 Score=35.43 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=24.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
.||+|+|.|.+|..+...+..+. .+|+.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g---~~V~~~d 33 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAG---YDVVMVD 33 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCC---CceEEEe
Confidence 37999999999999999988764 5776664
No 278
>PRK08818 prephenate dehydrogenase; Provisional
Probab=54.11 E-value=17 Score=37.79 Aligned_cols=31 Identities=32% Similarity=0.372 Sum_probs=24.4
Q ss_pred eeeEEEEcC-ChhHHHHHHHHHhCCCCCceEEEE
Q 015291 86 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVV 118 (409)
Q Consensus 86 ~ikVaInGf-GrIGr~vlr~l~~~~~~~~~vVaI 118 (409)
+.||+|+|. |.||+.+.++|.++. ..+|.++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~--~~~V~g~ 35 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM--QLEVIGH 35 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC--CCEEEEE
Confidence 468999998 999999999998642 3566554
No 279
>PLN02427 UDP-apiose/xylose synthase
Probab=53.76 E-value=18 Score=36.67 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=26.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|||.|-| +|.||+.+++.|.++. ..+|+++..
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~--g~~V~~l~r 47 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTET--PHKVLALDV 47 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcC--CCEEEEEec
Confidence 5899999 9999999999998762 258888864
No 280
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=53.66 E-value=43 Score=33.38 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=21.2
Q ss_pred eEEEEcCChhHHHHHHHHHh-CCCCCceEEEEe
Q 015291 88 KVAINGFGRIGRNFLRCWHG-RKDSPLDVVVVN 119 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~-~~~~~~~vVaIn 119 (409)
+|.|.|.|.||...+.++.. .. ...|+++.
T Consensus 166 ~VlV~G~G~vGl~~~~~a~~~~g--~~~vi~~~ 196 (341)
T cd08237 166 VIGVWGDGNLGYITALLLKQIYP--ESKLVVFG 196 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhcC--CCcEEEEe
Confidence 68999999999988876653 21 13566554
No 281
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=53.34 E-value=1e+02 Score=30.12 Aligned_cols=29 Identities=24% Similarity=0.224 Sum_probs=22.3
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCce-EEEEe
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN 119 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~-vVaIn 119 (409)
+|.|+|-|.+|+.+++++..+. .+ ++++.
T Consensus 168 ~VlV~g~g~vg~~~~~la~~~g---~~~v~~~~ 197 (343)
T cd08235 168 TVLVIGAGPIGLLHAMLAKASG---ARKVIVSD 197 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CcEEEEEC
Confidence 7899999999999998776653 45 55553
No 282
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=53.14 E-value=80 Score=31.07 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=46.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~ 166 (409)
-+|.|.|.|.+|+.+++++.... .+++++... .+...++.++ | . +. .++.+....
T Consensus 171 ~~vlV~g~g~vG~~~~~~a~~~G---~~v~~~~~~--~~~~~~~~~~----g---~-------~~-vi~~~~~~~----- 225 (337)
T cd05283 171 KRVGVVGIGGLGHLAVKFAKALG---AEVTAFSRS--PSKKEDALKL----G---A-------DE-FIATKDPEA----- 225 (337)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CeEEEEcCC--HHHHHHHHHc----C---C-------cE-EecCcchhh-----
Confidence 36888899999999888776543 466655432 1222222111 1 0 00 111110000
Q ss_pred CCCCCccccCccEEEeCCCCCCChhhHHHHHHcCC
Q 015291 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (409)
Q Consensus 167 p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGa 201 (409)
...+ + .++|+||+|+|.-...+.+..+++.+.
T Consensus 226 ~~~~-~--~~~d~v~~~~g~~~~~~~~~~~l~~~G 257 (337)
T cd05283 226 MKKA-A--GSLDLIIDTVSASHDLDPYLSLLKPGG 257 (337)
T ss_pred hhhc-c--CCceEEEECCCCcchHHHHHHHhcCCC
Confidence 0111 1 379999999997544556667776555
No 283
>PRK08655 prephenate dehydrogenase; Provisional
Probab=53.04 E-value=18 Score=38.17 Aligned_cols=30 Identities=30% Similarity=0.615 Sum_probs=24.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
|||+|+| +|.+|+.+.+.|.+.. .+|.+++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G---~~V~v~~ 31 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG---FEVIVTG 31 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC---CEEEEEE
Confidence 4899998 9999999999998754 4666554
No 284
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=52.91 E-value=7.4 Score=37.80 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=20.8
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~ 109 (409)
.-||.|.|.|-+|-.+++.|....
T Consensus 32 ~~~VliiG~GglGs~va~~La~~G 55 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAG 55 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC
Confidence 358999999999999999998654
No 285
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=52.60 E-value=20 Score=35.64 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=26.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+||.|-| +|.||+.+++.|.++. ..+|++++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~--~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETT--DWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCC--CCeEEEEeC
Confidence 4899999 8999999999998642 268888864
No 286
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.45 E-value=70 Score=33.17 Aligned_cols=110 Identities=22% Similarity=0.300 Sum_probs=60.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~ 166 (409)
.+|.|.|-|++|+.+.+.|.++. .+|+++ |....+.+...++ +.+. .+ +.++....
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G---~~V~~~-d~~~~~~~~~~~~----------~l~~-~~---------~~~~~~~~ 61 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLG---AKVILT-DEKEEDQLKEALE----------ELGE-LG---------IELVLGEY 61 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEE-eCCchHHHHHHHH----------HHHh-cC---------CEEEeCCc
Confidence 47999999999999999999875 466544 4322111111110 0000 01 11111111
Q ss_pred CCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCC-eEEecCCcc
Q 015291 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIP-TYVVGVNEK 225 (409)
Q Consensus 167 p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps---~~~dvP-~vV~gVN~~ 225 (409)
++++ ..+.|+||-++|...+.+......+.|. .|++.+. .....| .-|-|-|..
T Consensus 62 ~~~~---~~~~d~vv~~~g~~~~~~~~~~a~~~~i--~~~~~~~~~~~~~~~~vI~ITGS~GK 119 (450)
T PRK14106 62 PEEF---LEGVDLVVVSPGVPLDSPPVVQAHKKGI--EVIGEVELAYRFSKAPIVAITGTNGK 119 (450)
T ss_pred chhH---hhcCCEEEECCCCCCCCHHHHHHHHCCC--cEEeHHHHHHhhcCCCEEEEeCCCch
Confidence 1111 1268999999998888777777777776 4554331 100133 355677754
No 287
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=52.44 E-value=20 Score=35.36 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=24.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
.||+|+|.|.+|..+...|.... .+|+.++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g---~~V~~~d 34 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKG---LQVVLID 34 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCC---CeEEEEE
Confidence 37999999999999999987653 5777665
No 288
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=51.92 E-value=23 Score=36.11 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=26.9
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 86 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
++||.|-| +|-||+.+++.|.++. .+|+++..
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G---~~V~~v~r 53 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEG---HYIIASDW 53 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCC---CEEEEEEe
Confidence 46899999 9999999999998764 57877753
No 289
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=51.90 E-value=52 Score=33.02 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=23.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEe
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~-~vVaIn 119 (409)
-+|.|.|.|.||..+++++..+. . .|+++.
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~G---~~~Vi~~~ 216 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIAG---ASRIIGVD 216 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEe
Confidence 37899999999999988777653 4 466664
No 290
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=51.81 E-value=17 Score=40.78 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=23.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
-||+|+|.|.+|+.+...+..+. .++|+.+.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~--G~~V~l~d 340 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKA--GLPVRIKD 340 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHc--CCeEEEEe
Confidence 37999999999999998876231 26776554
No 291
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.54 E-value=1.1e+02 Score=31.90 Aligned_cols=105 Identities=21% Similarity=0.303 Sum_probs=60.2
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCC-hhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEec-C
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGG-VKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN-R 165 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~-~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~-~ 165 (409)
||.|.|.|..|+..++.|..+. ...+|. +.|... +... +.|.- | +.++.. .
T Consensus 9 ~v~viG~G~sG~s~~~~l~~~~-~~~~v~-~~D~~~~~~~~----------------------~~l~~-g--~~~~~g~~ 61 (438)
T PRK04663 9 NVVVVGLGITGLSVVKHLRKYQ-PQLTVK-VIDTRETPPGQ----------------------EQLPE-D--VELHSGGW 61 (438)
T ss_pred eEEEEeccHHHHHHHHHHHhcC-CCCeEE-EEeCCCCchhH----------------------HHhhc-C--CEEEeCCC
Confidence 7999999999999999998652 124554 444311 0000 01110 1 222222 2
Q ss_pred CCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCC-eEEecCCcc
Q 015291 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIP-TYVVGVNEK 225 (409)
Q Consensus 166 ~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps---~~~dvP-~vV~gVN~~ 225 (409)
+++.++ +.|+|+-+.|.-.+.+......+.|. -|++-.- .--+.| .-|-|-|.+
T Consensus 62 ~~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~gi--~i~~~~el~~~~~~~~~I~VTGTnGK 119 (438)
T PRK04663 62 NLEWLL----EADLVVTNPGIALATPEIQQVLAAGI--PVVGDIELFAWAVDKPVIAITGSNGK 119 (438)
T ss_pred ChHHhc----cCCEEEECCCCCCCCHHHHHHHHCCC--cEEEHHHHHHhhcCCCEEEEeCCCCH
Confidence 445443 57999999999877777777777887 3454221 000123 356677765
No 292
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=51.49 E-value=21 Score=39.22 Aligned_cols=40 Identities=18% Similarity=0.106 Sum_probs=28.6
Q ss_pred cceeeEEEEc-CChhHHHHHHHHHhCCCCCceE-EEEeCCCChhh
Q 015291 84 VAKLKVAING-FGRIGRNFLRCWHGRKDSPLDV-VVVNDSGGVKN 126 (409)
Q Consensus 84 ~m~ikVaInG-fGrIGr~vlr~l~~~~~~~~~v-VaInd~~~~~~ 126 (409)
++.|||-|-| .|.||+.+.+.|.++. .++ ++..++.+.+.
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g---~~v~~~~~~l~d~~~ 419 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQG---IAYEYGKGRLEDRSS 419 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCC---CeEEeeccccccHHH
Confidence 4457999999 9999999999998754 465 34444444433
No 293
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=51.25 E-value=31 Score=34.87 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=22.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEe
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~-~vVaIn 119 (409)
+|.|+|.|.||...++++..+. . +|+++.
T Consensus 188 ~VlV~G~G~iG~~a~q~Ak~~G---~~~Vi~~~ 217 (368)
T TIGR02818 188 TVAVFGLGGIGLSVIQGARMAK---ASRIIAID 217 (368)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCeEEEEc
Confidence 7999999999999998877653 4 566664
No 294
>PF12338 RbcS: Ribulose-1,5-bisphosphate carboxylase small subunit; InterPro: IPR024680 This domain is found in the N-terminal region of the small subunit of ribulose-1,5-bisphosphate in plants. It contains a conserved APF sequence motif. There are also two completely conserved residues (L and P) that may be functionally important.
Probab=51.08 E-value=8 Score=28.39 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=17.4
Q ss_pred ccccccccccccccccccccc
Q 015291 35 LDVAEFAGLRANAGATYATGA 55 (409)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~ 55 (409)
.-.+-|+|||+.+.+|..++.
T Consensus 22 ~mVAPFtGLKS~a~fPvtrK~ 42 (45)
T PF12338_consen 22 SMVAPFTGLKSTAAFPVTRKS 42 (45)
T ss_pred ceeeccccccccccCcccccc
Confidence 356789999999999887665
No 295
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=50.86 E-value=19 Score=37.47 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=24.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|||+|.|.|.+|..+..++.. . .+|++++-
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G---~~VigvD~ 30 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-N---HEVVALDI 30 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-C---CcEEEEEC
Confidence 489999999999999977653 3 68888864
No 296
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.82 E-value=1e+02 Score=32.01 Aligned_cols=91 Identities=19% Similarity=0.250 Sum_probs=53.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~ 166 (409)
.+|.|.|.|.+|+.++|.|.++. .+|++.......+....|-+ . ..| +.+.....
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g---~~v~~~d~~~~~~~~~~l~~-----------------~---~~g--i~~~~g~~ 60 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNG---AEVAAYDAELKPERVAQIGK-----------------M---FDG--LVFYTGRL 60 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEeCCCCchhHHHHhh-----------------c---cCC--cEEEeCCC
Confidence 37999999999999999998775 56654432111111111100 0 011 22222221
Q ss_pred CCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEe
Q 015291 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (409)
Q Consensus 167 p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVIS 207 (409)
++.+ + .+.|+|+-+.|.--+.+......+.|. -|++
T Consensus 61 ~~~~-~--~~~d~vv~spgi~~~~p~~~~a~~~~i--~v~~ 96 (445)
T PRK04308 61 KDAL-D--NGFDILALSPGISERQPDIEAFKQNGG--RVLG 96 (445)
T ss_pred CHHH-H--hCCCEEEECCCCCCCCHHHHHHHHcCC--cEEE
Confidence 2111 1 267999999999887777777777777 4554
No 297
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=50.51 E-value=27 Score=36.75 Aligned_cols=32 Identities=25% Similarity=0.612 Sum_probs=27.5
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 86 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
.|||-|-| +|-||+.+++.|.++. .+|+++..
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G---~~V~~ldr 152 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRG---DEVIVIDN 152 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC---CEEEEEeC
Confidence 47899999 9999999999998874 58888854
No 298
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=50.42 E-value=29 Score=32.85 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=25.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+||.|.| .|.||+.+++.|..+. .+|+++..
T Consensus 18 ~~ilItGasG~iG~~l~~~L~~~g---~~V~~~~R 49 (251)
T PLN00141 18 KTVFVAGATGRTGKRIVEQLLAKG---FAVKAGVR 49 (251)
T ss_pred CeEEEECCCcHHHHHHHHHHHhCC---CEEEEEec
Confidence 5899999 8999999999988753 57766643
No 299
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=50.02 E-value=21 Score=36.86 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=26.5
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+.+|-|.|+|++|+.+++.|.++. .+++.|..
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~---~~v~vid~ 262 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEG---YSVKLIER 262 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CeEEEEEC
Confidence 358999999999999999998754 57777754
No 300
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=49.96 E-value=31 Score=34.18 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=22.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEe
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~-~vVaIn 119 (409)
+|.|+|.|.+|+..++++..+. . .|+++.
T Consensus 175 ~vlI~g~g~vG~~a~q~a~~~G---~~~v~~~~ 204 (351)
T cd08233 175 TALVLGAGPIGLLTILALKAAG---ASKIIVSE 204 (351)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCEEEEEC
Confidence 6899999999999999887653 5 555553
No 301
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=49.65 E-value=46 Score=32.36 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=22.3
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCce-EEEEe
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN 119 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~-vVaIn 119 (409)
+|.|+|.|.+|+.+++++..+. +. ++++.
T Consensus 162 ~vlI~g~g~vg~~~~~la~~~G---~~~v~~~~ 191 (334)
T cd08234 162 SVLVFGAGPIGLLLAQLLKLNG---ASRVTVAE 191 (334)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CcEEEEEC
Confidence 6899999999999998887653 45 55453
No 302
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=49.28 E-value=51 Score=33.67 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=23.2
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
+|.|.|.|.||...++++..+. .+++++.
T Consensus 181 ~VlV~G~G~vG~~avq~Ak~~G---a~Vi~~~ 209 (375)
T PLN02178 181 RLGVNGLGGLGHIAVKIGKAFG---LRVTVIS 209 (375)
T ss_pred EEEEEcccHHHHHHHHHHHHcC---CeEEEEe
Confidence 6899999999999998887664 4666664
No 303
>PRK05442 malate dehydrogenase; Provisional
Probab=48.75 E-value=28 Score=35.44 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=19.1
Q ss_pred eeeEEEEcC-ChhHHHHHHHHHhC
Q 015291 86 KLKVAINGF-GRIGRNFLRCWHGR 108 (409)
Q Consensus 86 ~ikVaInGf-GrIGr~vlr~l~~~ 108 (409)
+.||+|.|. |.||..++-.|..+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~ 27 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASG 27 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhh
Confidence 469999996 99999998777653
No 304
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=48.53 E-value=34 Score=38.69 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=23.5
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
||||+|.|.+|..+...+.... ++|+-+.
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~G---~~V~l~d 365 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDKG---LKTVLKD 365 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhCC---CcEEEec
Confidence 6999999999999998887653 6776553
No 305
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=48.53 E-value=26 Score=34.34 Aligned_cols=30 Identities=23% Similarity=0.353 Sum_probs=24.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
.||+|+|.|.+|..+...+.... ++|+..+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G---~~V~l~d 34 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAG---YDVLLND 34 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC---CeEEEEe
Confidence 47999999999999999888654 5766564
No 306
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=48.51 E-value=35 Score=34.71 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.1
Q ss_pred eeeEEEEcC-ChhHHHHHHHHHhC
Q 015291 86 KLKVAINGF-GRIGRNFLRCWHGR 108 (409)
Q Consensus 86 ~ikVaInGf-GrIGr~vlr~l~~~ 108 (409)
++||+|.|. |.||..++-.|..+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~ 26 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASG 26 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhC
Confidence 689999996 99999998887755
No 307
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=48.49 E-value=25 Score=34.50 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=25.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|||.|.| +|-||+.+++.|.++. .+|+++..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~~ 32 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG---HDVVILDN 32 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC---CeEEEEec
Confidence 4899999 9999999999998764 57877753
No 308
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=48.40 E-value=61 Score=30.62 Aligned_cols=29 Identities=17% Similarity=0.130 Sum_probs=22.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
||.|+|-|.+|..-++.|.+.. -.|+.|.
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~g---a~VtVvs 39 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAG---AQLRVIA 39 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCC---CEEEEEc
Confidence 7999999999999999988764 2444454
No 309
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=48.07 E-value=32 Score=33.36 Aligned_cols=30 Identities=20% Similarity=0.218 Sum_probs=24.0
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+|-|+| .|.+|+.+++++.... .+|+++..
T Consensus 146 ~vlI~ga~g~vG~~aiqlA~~~G---~~vi~~~~ 176 (329)
T cd08294 146 TVVVNGAAGAVGSLVGQIAKIKG---CKVIGCAG 176 (329)
T ss_pred EEEEecCccHHHHHHHHHHHHcC---CEEEEEeC
Confidence 689999 8999999999887654 57766654
No 310
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=48.03 E-value=90 Score=30.97 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=23.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEe
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~-~vVaIn 119 (409)
+|.|+|.|.||+.+++++.... . .|+++.
T Consensus 180 ~vlI~g~g~vG~~~~~lak~~G---~~~v~~~~ 209 (361)
T cd08231 180 TVVVQGAGPLGLYAVAAAKLAG---ARRVIVID 209 (361)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCeEEEEc
Confidence 6899999999999998887653 5 666664
No 311
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=47.91 E-value=35 Score=33.01 Aligned_cols=95 Identities=16% Similarity=0.216 Sum_probs=50.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCCC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~p 167 (409)
+|-|+|.|.+|+.+++++..+. ..|+++... .+...++-++ |. +.+ ++.+.... .+. .
T Consensus 168 ~vli~g~g~vG~~~~~la~~~G---~~V~~~~~s--~~~~~~~~~~----g~----------~~~-~~~~~~~~-~~~-~ 225 (338)
T cd08254 168 TVLVIGLGGLGLNAVQIAKAMG---AAVIAVDIK--EEKLELAKEL----GA----------DEV-LNSLDDSP-KDK-K 225 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHcC---CEEEEEcCC--HHHHHHHHHh----CC----------CEE-EcCCCcCH-HHH-H
Confidence 6888899999999998887654 567666432 2222222111 10 000 11100000 000 0
Q ss_pred CCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEE
Q 015291 168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (409)
Q Consensus 168 ~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVI 206 (409)
...+ ..++|+||+|.|.-...+.+..+++.|.+-+.+
T Consensus 226 ~~~~--~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 226 AAGL--GGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred HHhc--CCCceEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 0111 137999999998644455667788777643333
No 312
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=47.86 E-value=25 Score=39.53 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=23.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
||+|+|.|.+|+-+...+.... ++|+-+.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G---~~V~l~d 343 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKG---VPVIMKD 343 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCC---CeEEEEe
Confidence 7999999999999998877553 6766554
No 313
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=47.83 E-value=53 Score=35.75 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~ 109 (409)
-||.|.|.|++|+..++.+....
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lG 187 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLG 187 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC
Confidence 58999999999999999988764
No 314
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=47.78 E-value=10 Score=36.75 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~ 109 (409)
-||.|.|.|-+|-.++..|....
T Consensus 25 ~~VlvvG~GglGs~va~~La~~G 47 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAG 47 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcC
Confidence 48999999999999999998654
No 315
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=47.75 E-value=91 Score=29.43 Aligned_cols=29 Identities=28% Similarity=0.309 Sum_probs=23.0
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCce-EEEEe
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN 119 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~-vVaIn 119 (409)
+|.|+|.|.+|+.+++.+..+. .. |+++.
T Consensus 100 ~vlI~g~g~vg~~~i~~a~~~g---~~~vi~~~ 129 (277)
T cd08255 100 RVAVVGLGLVGLLAAQLAKAAG---AREVVGVD 129 (277)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCcEEEEC
Confidence 6899999999999998887654 45 66664
No 316
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=47.30 E-value=1.1e+02 Score=29.30 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=25.0
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCC-CCCceEEEEeC
Q 015291 86 KLKVAING-FGRIGRNFLRCWHGRK-DSPLDVVVVND 120 (409)
Q Consensus 86 ~ikVaInG-fGrIGr~vlr~l~~~~-~~~~~vVaInd 120 (409)
.+..-|.| +|..|+.+++.+.|.+ + -.|++|-.
T Consensus 18 ~~s~fvlGAtG~~G~~llk~~~E~~~F--SKV~~i~R 52 (238)
T KOG4039|consen 18 NMSGFVLGATGLCGGGLLKHAQEAPQF--SKVYAILR 52 (238)
T ss_pred ccceEEEeccccccHHHHHHHHhcccc--eeEEEEEe
Confidence 35688999 9999999999998873 3 25555543
No 317
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=47.30 E-value=28 Score=27.88 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=19.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGR 108 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~ 108 (409)
.|++|.|+|.+|+.+++.|.+.
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~ 45 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADE 45 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4799999999999999998865
No 318
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=47.25 E-value=38 Score=32.36 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=23.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCce-EEEEeC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVND 120 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~-vVaInd 120 (409)
+|.|+|.|.+|+.+++++.... ++ ++++..
T Consensus 132 ~vlI~g~g~vg~~~~~la~~~g---~~~v~~~~~ 162 (312)
T cd08269 132 TVAVIGAGFIGLLFLQLAAAAG---ARRVIAIDR 162 (312)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CcEEEEECC
Confidence 6899999999999999887664 56 666654
No 319
>PRK10083 putative oxidoreductase; Provisional
Probab=46.72 E-value=76 Score=31.02 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=17.5
Q ss_pred eEEEEcCChhHHHHHHHHHh
Q 015291 88 KVAINGFGRIGRNFLRCWHG 107 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~ 107 (409)
+|.|+|-|.+|+.+++++..
T Consensus 163 ~vlI~g~g~vG~~~~~~a~~ 182 (339)
T PRK10083 163 VALIYGAGPVGLTIVQVLKG 182 (339)
T ss_pred EEEEECCCHHHHHHHHHHHH
Confidence 79999999999999887764
No 320
>PRK07877 hypothetical protein; Provisional
Probab=46.65 E-value=9.4 Score=43.07 Aligned_cols=116 Identities=15% Similarity=0.105 Sum_probs=55.4
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC-CCCceEEEEeC-CCChhhhhhhhcccccccccCceEEEecCCeEEEC-CeEEEEE
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVND-SGGVKNASHLLKYDSLLGTFKADVKIVDNETISVD-GKLIKVV 162 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~-~~~~~vVaInd-~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~-gk~I~v~ 162 (409)
.-||+|+|.| +|-.++..|.... .+.+.| |.. ..+...+-..+-..+..|+.+.++- ...-..+| .-+|..+
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~l--vD~D~ve~sNLnRq~~~~~diG~~Kv~~a--~~~l~~inp~i~v~~~ 181 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRL--ADFDTLELSNLNRVPAGVFDLGVNKAVVA--ARRIAELDPYLPVEVF 181 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEE--EcCCEEcccccccccCChhhcccHHHHHH--HHHHHHHCCCCEEEEE
Confidence 4589999999 9999999887543 132322 211 1222222222211122355443222 11111122 1233443
Q ss_pred ecC-CCCCCCccccCccEEEeCCCCCCChhhHH-HHHHcCCCEEEEeC
Q 015291 163 SNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAG-KHIQAGAKKVIITA 208 (409)
Q Consensus 163 ~~~-~p~~l~W~~~gvDiVle~TG~f~s~e~a~-~hl~aGakkVVISa 208 (409)
.+. ++++++=--.++|+||||+-.|.++-..- ...+.|. -+|++
T Consensus 182 ~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~i--P~i~~ 227 (722)
T PRK07877 182 TDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRI--PVLMA 227 (722)
T ss_pred eccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCC--CEEEE
Confidence 322 23332200127899999999987664443 2334444 34444
No 321
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=46.51 E-value=27 Score=36.00 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=25.7
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
.-||.|.|+|++|+.+++.+.... .+|++++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lG---a~V~v~d~ 198 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLG---ATVTILDI 198 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCC---CeEEEEEC
Confidence 357999999999999999998664 46766653
No 322
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=46.36 E-value=22 Score=38.04 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=26.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
.+|||+|.|..|..+.+.|.++. ++|.+.|.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G---~~V~v~dr 32 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRG---FKISVYNR 32 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCC---CeEEEEeC
Confidence 48999999999999999998765 57777764
No 323
>PLN02702 L-idonate 5-dehydrogenase
Probab=46.21 E-value=43 Score=33.43 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=18.8
Q ss_pred eEEEEcCChhHHHHHHHHHhCC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~ 109 (409)
+|.|+|-|.+|..+++++....
T Consensus 184 ~vlI~g~g~vG~~~~~~a~~~G 205 (364)
T PLN02702 184 NVLVMGAGPIGLVTMLAARAFG 205 (364)
T ss_pred EEEEECCCHHHHHHHHHHHHcC
Confidence 7899999999999988887653
No 324
>PLN02206 UDP-glucuronate decarboxylase
Probab=45.94 E-value=33 Score=36.17 Aligned_cols=32 Identities=28% Similarity=0.508 Sum_probs=27.1
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 86 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
.+||-|.| +|-||+.+++.|.++. .+|+++..
T Consensus 119 ~~kILVTGatGfIGs~Lv~~Ll~~G---~~V~~ld~ 151 (442)
T PLN02206 119 GLRVVVTGGAGFVGSHLVDRLMARG---DSVIVVDN 151 (442)
T ss_pred CCEEEEECcccHHHHHHHHHHHHCc---CEEEEEeC
Confidence 36899999 9999999999998874 58887754
No 325
>PLN02240 UDP-glucose 4-epimerase
Probab=45.78 E-value=31 Score=34.08 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=26.5
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 86 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
..||.|.| +|.||+.+++.|.++. .+|+++..
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g---~~V~~~~~ 37 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAG---YKVVVIDN 37 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeC
Confidence 45899999 9999999999998764 58887753
No 326
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=45.76 E-value=33 Score=33.58 Aligned_cols=29 Identities=14% Similarity=0.428 Sum_probs=23.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
|||-|-| .|.||+.+++.|.++. +|+++.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g----~V~~~~ 30 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG----NLIALD 30 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC----CEEEec
Confidence 4899999 8999999999988653 455554
No 327
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=45.63 E-value=23 Score=39.83 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=23.7
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
||||+|.|.+|.-+..++.... ++|+-+.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G---~~V~l~d 343 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKG---TPIVMKD 343 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCC---CeEEEEe
Confidence 6999999999999999887653 6776553
No 328
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=45.49 E-value=30 Score=34.60 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=20.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~ 109 (409)
|||+|+|.|.||..++..|..+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g 23 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRG 23 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC
Confidence 48999999999999999888653
No 329
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=45.46 E-value=2.4e+02 Score=28.50 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=22.7
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
+|.|.| .|.||..++.++.... ++++++-
T Consensus 196 ~vlV~ga~g~iG~a~~~lak~~G---~~vv~~~ 225 (393)
T cd08246 196 NVLIWGASGGLGSMAIQLARAAG---ANPVAVV 225 (393)
T ss_pred EEEEECCCcHHHHHHHHHHHHcC---CeEEEEe
Confidence 799999 6999999988877654 5666653
No 330
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=45.40 E-value=85 Score=28.90 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=22.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+|.|+|.|.+|+.+++++.... .+|+++..
T Consensus 137 ~vli~g~~~~G~~~~~~a~~~g---~~v~~~~~ 166 (271)
T cd05188 137 TVLVLGAGGVGLLAAQLAKAAG---ARVIVTDR 166 (271)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CeEEEEcC
Confidence 7999997669999998887653 56666643
No 331
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=45.22 E-value=61 Score=31.77 Aligned_cols=30 Identities=23% Similarity=0.233 Sum_probs=23.3
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCce-EEEEeC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVND 120 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~-vVaInd 120 (409)
+|.|+|.|.+|+.+++++..+. .+ ++++..
T Consensus 162 ~vlI~g~g~~g~~~~~lA~~~G---~~~v~~~~~ 192 (343)
T cd08236 162 TVVVIGAGTIGLLAIQWLKILG---AKRVIAVDI 192 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCEEEEEcC
Confidence 7999999999999998877653 45 666654
No 332
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=45.09 E-value=37 Score=29.44 Aligned_cols=31 Identities=29% Similarity=0.289 Sum_probs=23.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
.||+|.|.|.+|+.+++.|.... .-+|..++
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g--~~~v~v~~ 50 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELG--AAKIVIVN 50 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC--CCEEEEEc
Confidence 48999999999999999998653 12454454
No 333
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=44.64 E-value=26 Score=36.18 Aligned_cols=31 Identities=29% Similarity=0.478 Sum_probs=23.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
|||.+.|.|.|||.++..+..+. ..+|+.|.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~--g~~V~~vd 31 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN--GFEVTFVD 31 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC--CCeEEEEE
Confidence 58999999999997766555543 26777775
No 334
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=44.46 E-value=30 Score=36.20 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=25.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~ 121 (409)
-+|+|.|+|.||+.+++.|..+.. -+|+.+|..
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~--~~V~v~~rs 213 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGV--GKILIANRT 213 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCC--CEEEEEeCC
Confidence 479999999999999999987531 356666653
No 335
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=44.43 E-value=36 Score=33.47 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=24.3
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+|.|+|.|.+|+.+++++.... ++|+++..
T Consensus 168 ~vlV~g~g~vg~~~~~~a~~~G---~~vi~~~~ 197 (345)
T cd08260 168 WVAVHGCGGVGLSAVMIASALG---ARVIAVDI 197 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CeEEEEeC
Confidence 7999999999999998887653 67776644
No 336
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=44.31 E-value=32 Score=35.01 Aligned_cols=29 Identities=31% Similarity=0.352 Sum_probs=24.0
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
||||+|.|.+|+.+...+.... ++|+..+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG---~~V~l~D 37 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHG---LDVVAWD 37 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCC---CeEEEEe
Confidence 7999999999999999887654 6876554
No 337
>smart00833 CobW_C Cobalamin synthesis protein cobW C-terminal domain. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis PUBMED:12869542. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression PUBMED:7765511.
Probab=44.19 E-value=35 Score=27.06 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=38.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHcccC--CCCccccccCCC--eEEecCCCCCcc
Q 015291 331 DLVVNVEKKGITAEDVNAAFRKAAEG--PLKGILAVCDVP--LVSVDFRCSDVS 380 (409)
Q Consensus 331 dltv~lek~~vs~eeI~~al~~aa~~--~lkgil~~~e~p--~VS~Df~~~~~S 380 (409)
.++++...+ .+.+++.+.|++-..+ .+||++...+++ .+..++.++.+.
T Consensus 3 s~~~~~~~~-~~~~~l~~~l~~l~~~i~R~KG~v~~~~~~~~~~~~q~v~~~~~ 55 (92)
T smart00833 3 SFVYRARRP-FHPQRLLAALDELPEGVLRAKGFFWLASRPDLPGVLSGAGGRLR 55 (92)
T ss_pred EEEEecCCC-CCHHHHHHHHHhccCCeEEEEEEEEeCCCCCeEEEEEccCCeeE
Confidence 567778888 9999999999877644 689999998775 566777777654
No 338
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=44.09 E-value=67 Score=31.03 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=23.8
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+|.|+| .|.+|..+++++..+. ++|+++..
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g---~~v~~~~~ 179 (326)
T cd08289 149 PVLVTGATGGVGSLAVSILAKLG---YEVVASTG 179 (326)
T ss_pred EEEEEcCCchHHHHHHHHHHHCC---CeEEEEec
Confidence 689999 5999999999887764 57766654
No 339
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=43.29 E-value=28 Score=34.25 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=21.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEE
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaI 118 (409)
|||-|.| +|- ||.+++.|.++. .+|++-
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g---~~v~~s 29 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG---IEILVT 29 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC---CeEEEE
Confidence 4788999 898 999999888653 566544
No 340
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=43.05 E-value=1.4e+02 Score=29.90 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=23.2
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCce-EEEEeC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVND 120 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~-vVaInd 120 (409)
+|.|+|.|.+|+.+++++..+. .. ++++..
T Consensus 190 ~VlI~g~g~vG~~~~~lak~~G---~~~vi~~~~ 220 (367)
T cd08263 190 TVAVIGVGGVGSSAIQLAKAFG---ASPIIAVDV 220 (367)
T ss_pred EEEEECCcHHHHHHHHHHHHcC---CCeEEEEeC
Confidence 6889999999999999887654 45 655543
No 341
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=42.96 E-value=45 Score=32.99 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=22.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCce-EEEEe
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN 119 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~-vVaIn 119 (409)
+|.|+|.|.||...++++..+. .+ |+++.
T Consensus 163 ~vlV~G~g~vG~~~~~~a~~~G---~~~v~~~~ 192 (347)
T PRK10309 163 NVIIIGAGTIGLLAIQCAVALG---AKSVTAID 192 (347)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCeEEEEC
Confidence 7999999999999998887654 45 44553
No 342
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=42.94 E-value=28 Score=34.47 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=20.8
Q ss_pred EEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 015291 89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (409)
Q Consensus 89 VaInGfGrIGr~vlr~l~~~~~~~~~vVaI 118 (409)
|+|.|.|.+|..+..++..+.. .+|+-+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l--~eV~L~ 28 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKEL--GDVVLL 28 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCC--cEEEEE
Confidence 6899999999999888775431 165544
No 343
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=42.86 E-value=99 Score=31.06 Aligned_cols=30 Identities=17% Similarity=0.340 Sum_probs=23.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEe
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~-~vVaIn 119 (409)
-+|.|+|.|.||...++++..+. . .|+++.
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~G---~~~vi~~~ 218 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAAG---ASRIIGID 218 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEe
Confidence 36999999999999998887653 4 466553
No 344
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=42.83 E-value=36 Score=33.42 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=23.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
.||+|.|.|.+|..+...+.... .+|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G---~~V~l~d 33 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG---FDVTIYD 33 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC---CeEEEEe
Confidence 47999999999999999887653 4665554
No 345
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=42.58 E-value=66 Score=30.95 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=25.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~ 121 (409)
-+|.|+| .|.||+.+++++..+. .+++++.+.
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a~~~G---~~v~~~~~~ 173 (324)
T cd08292 141 QWLIQNAAGGAVGKLVAMLAAARG---INVINLVRR 173 (324)
T ss_pred CEEEEcccccHHHHHHHHHHHHCC---CeEEEEecC
Confidence 3699998 7999999999887764 577666554
No 346
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=42.50 E-value=14 Score=37.84 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=21.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKD 110 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~ 110 (409)
..||.|.|.|-+|-.++..|.....
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gv 52 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGV 52 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC
Confidence 3589999999999999999986543
No 347
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=42.49 E-value=1.3e+02 Score=29.40 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=18.8
Q ss_pred eEEEEcCChhHHHHHHHHHhCC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~ 109 (409)
+|.|+|.|.+|..+++++....
T Consensus 164 ~VlI~g~g~vg~~~~~la~~~G 185 (341)
T cd08262 164 VALVIGCGPIGLAVIAALKARG 185 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHcC
Confidence 6899999999999988877654
No 348
>PRK08219 short chain dehydrogenase; Provisional
Probab=42.41 E-value=35 Score=31.04 Aligned_cols=31 Identities=16% Similarity=0.152 Sum_probs=24.6
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 86 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+.++-|.| .|.||+.+++.|.++ .+|+++..
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~----~~V~~~~r 34 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT----HTLLLGGR 34 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh----CCEEEEeC
Confidence 34799999 999999999998865 36666654
No 349
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=42.23 E-value=1.1e+02 Score=29.96 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=23.3
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCc-eEEEE
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPL-DVVVV 118 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~-~vVaI 118 (409)
+|.|+|.|.+|+.+++++..+. + .|+++
T Consensus 170 ~vlI~g~g~vg~~~~~~a~~~g---~~~v~~~ 198 (344)
T cd08284 170 TVAVIGCGPVGLCAVLSAQVLG---AARVFAV 198 (344)
T ss_pred EEEEECCcHHHHHHHHHHHHcC---CceEEEE
Confidence 6899999999999999888764 4 57777
No 350
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=42.15 E-value=51 Score=33.10 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=22.6
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEeC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVND 120 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~-~vVaInd 120 (409)
+|.|+|.|.+|..+++++..+. . .++++..
T Consensus 189 ~vlI~g~g~vG~~~~~la~~~G---~~~v~~~~~ 219 (365)
T cd08278 189 SIAVFGAGAVGLAAVMAAKIAG---CTTIIAVDI 219 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCeEEEEeC
Confidence 6899999999999988877654 4 3555543
No 351
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=42.02 E-value=33 Score=33.09 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=25.5
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+||.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g---~~V~~~~r 32 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG---EEVRVLVR 32 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC---CEEEEEEe
Confidence 3799999 8999999999998764 57777764
No 352
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=41.98 E-value=37 Score=29.61 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=26.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~ 121 (409)
-||.|.|.|-+||.++..|..+... +|.-+|..
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~--~i~i~nRt 45 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAK--EITIVNRT 45 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSS--EEEEEESS
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCC--EEEEEECC
Confidence 3899999999999999999987532 36667763
No 353
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=41.95 E-value=34 Score=34.28 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=26.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+||-|-| +|-||+.+++.|.++. .+|+++..
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~~~g---~~V~~~d~ 47 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELLFLN---QTVIGLDN 47 (348)
T ss_pred CEEEEECCccHHHHHHHHHHHHCC---CEEEEEeC
Confidence 5899999 9999999999999874 58888854
No 354
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=41.90 E-value=33 Score=32.77 Aligned_cols=31 Identities=29% Similarity=0.602 Sum_probs=24.7
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
||.|.| +|.||+.+++.|.++. +..+|++++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~-~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEH-PDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhC-CCCEEEEec
Confidence 588999 9999999999887653 236787775
No 355
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=41.61 E-value=26 Score=34.92 Aligned_cols=30 Identities=30% Similarity=0.544 Sum_probs=25.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
|+||.+|.||.|.++.+-|..+. -++|+-.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g---hdvV~yD 30 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG---HDVVGYD 30 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC---CeEEEEc
Confidence 47999999999999999888764 5777663
No 356
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.57 E-value=61 Score=33.78 Aligned_cols=108 Identities=21% Similarity=0.231 Sum_probs=57.6
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCC-Chhh--h-hhhhcccccccccCceEEEecCCeEEECCeEEEEEe
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKN--A-SHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~-~~~~--~-a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~ 163 (409)
||.|.|.|..|+..++.|..+. .+|.. .|.. ..++ + .+|.+ .|-.+..+. .
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G---~~V~~-~D~~~~~~~~~~~~~l~~---------------~gi~~~~g~-~----- 56 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG---WEVVV-SDRNDSPELLERQQELEQ---------------EGITVKLGK-P----- 56 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC---CEEEE-ECCCCchhhHHHHHHHHH---------------cCCEEEECC-c-----
Confidence 7999999999999999988764 46544 4431 1111 0 11111 011111110 0
Q ss_pred cCCCCC--CCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCC----CCCCCC-eEEecCCcc
Q 015291 164 NRDPLQ--LPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA----KGADIP-TYVVGVNEK 225 (409)
Q Consensus 164 ~~~p~~--l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps----~~~dvP-~vV~gVN~~ 225 (409)
.+++. ..|. +.|+|+=+.|.-.+........+.|.+ |++-.. ...+.| .-|-|-|..
T Consensus 57 -~~~~~~~~~~~--~~d~vv~s~gi~~~~~~~~~a~~~~i~--v~~~~~~~~~~~~~~~~I~VTGT~GK 120 (459)
T PRK02705 57 -LELESFQPWLD--QPDLVVVSPGIPWDHPTLVELRERGIE--VIGEIELAWRALKHIPWVGITGTNGK 120 (459)
T ss_pred -cchhhhhHHhh--cCCEEEECCCCCCCCHHHHHHHHcCCc--EEEhHHHHHHhhcCCCEEEEeCCCch
Confidence 01111 1232 578899899987777667777778873 555321 111233 345577754
No 357
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=41.53 E-value=30 Score=36.42 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=25.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|||||.|.|.+|.-+...|.+. ++|++++-
T Consensus 7 mkI~vIGlGyvGlpmA~~la~~----~~V~g~D~ 36 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGKS----RQVVGFDV 36 (425)
T ss_pred CeEEEECcCcchHHHHHHHhcC----CEEEEEeC
Confidence 6899999999999999987652 68888864
No 358
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=41.40 E-value=2.2e+02 Score=26.96 Aligned_cols=87 Identities=24% Similarity=0.294 Sum_probs=49.1
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~ 165 (409)
-+|.|.| .|.+|+.+++.+.... .++.++... .+....+.+ +|. + ...+..+
T Consensus 134 ~~vli~g~~~~~g~~~~~~a~~~g---~~v~~~~~~--~~~~~~~~~----~g~---~-------~~~~~~~-------- 186 (305)
T cd08270 134 RRVLVTGASGGVGRFAVQLAALAG---AHVVAVVGS--PARAEGLRE----LGA---A-------EVVVGGS-------- 186 (305)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC---CEEEEEeCC--HHHHHHHHH----cCC---c-------EEEeccc--------
Confidence 3689999 5999999988887654 466655432 222222221 110 0 1111110
Q ss_pred CCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEE
Q 015291 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (409)
Q Consensus 166 ~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVI 206 (409)
+ +...++|++++|+|.- ..+.+-.++..+..-|.+
T Consensus 187 ~-----~~~~~~d~vl~~~g~~-~~~~~~~~l~~~G~~v~~ 221 (305)
T cd08270 187 E-----LSGAPVDLVVDSVGGP-QLARALELLAPGGTVVSV 221 (305)
T ss_pred c-----ccCCCceEEEECCCcH-HHHHHHHHhcCCCEEEEE
Confidence 0 1123799999999864 455566777777644434
No 359
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=41.30 E-value=53 Score=26.76 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=28.6
Q ss_pred EEEEEccCCCCHHHHHH-HHHHcccCCCCccccccCCCeEEe
Q 015291 332 LVVNVEKKGITAEDVNA-AFRKAAEGPLKGILAVCDVPLVSV 372 (409)
Q Consensus 332 ltv~lek~~vs~eeI~~-al~~aa~~~lkgil~~~e~p~VS~ 372 (409)
++++..+. .|..+|++ +|++|..-||-+.|.=.++.+.++
T Consensus 2 i~l~~~~~-~Tl~~iK~~lw~~A~~~PL~~~L~~~~~Y~F~~ 42 (78)
T PF02192_consen 2 IPLRVSRD-ATLSEIKEELWEEAKKYPLFSLLKDPSSYIFSC 42 (78)
T ss_dssp EEEEEETT--BHHHHHHHHHHHGGGSTTCCCS--GGGEEEEE
T ss_pred eEEEccCc-CcHHHHHHHHHHHHHhCChHHHhCCCCcEEEEE
Confidence 46677788 99999987 788888889999988666655433
No 360
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=41.25 E-value=88 Score=31.81 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=36.2
Q ss_pred CccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEecCCccccCcCCCcEEecCCcch
Q 015291 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTT 242 (409)
Q Consensus 176 gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~~~dvP~vV~gVN~~~~~~~~~~IISnaSCTT 242 (409)
+-|++|..+..-..-+-.+.|++-|| +|+++-..- |+-+.|--+|.=.+-+ ..+|+.++-.|
T Consensus 230 ~e~i~v~vAs~~~g~~I~pq~lkpg~--~ivD~g~P~-dvd~~vk~~~~V~Ii~--GGlV~~s~~it 291 (351)
T COG5322 230 QEDILVWVASMPKGVEIFPQHLKPGC--LIVDGGYPK-DVDTSVKNVGGVRIIP--GGLVEHSLDIT 291 (351)
T ss_pred ccceEEEEeecCCCceechhhccCCe--EEEcCCcCc-ccccccccCCCeEEec--CccccCccccc
Confidence 34555555544445566789999999 899875321 4556666666332211 34665555443
No 361
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=41.15 E-value=45 Score=33.87 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=19.2
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhC
Q 015291 87 LKVAINGF-GRIGRNFLRCWHGR 108 (409)
Q Consensus 87 ikVaInGf-GrIGr~vlr~l~~~ 108 (409)
+||+|.|. |.||..++..|..+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~ 23 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASG 23 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhC
Confidence 48999996 99999999888764
No 362
>PRK09291 short chain dehydrogenase; Provisional
Probab=41.10 E-value=40 Score=31.40 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=25.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
.+|-|.| .|.||+.+++.|.++. .+|+++..
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G---~~v~~~~r 34 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKG---HNVIAGVQ 34 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 3689999 9999999999998764 57776654
No 363
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=40.44 E-value=45 Score=33.25 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=26.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+||-|.| .|.||+.+++.|.++. .+|+++.+
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~G---~~V~~~~r 42 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQRG---YTVHATLR 42 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 5899999 9999999999998764 57877654
No 364
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=40.29 E-value=1.2e+02 Score=29.84 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=16.5
Q ss_pred EEc-CChhHHHHHHHHHhCC
Q 015291 91 ING-FGRIGRNFLRCWHGRK 109 (409)
Q Consensus 91 InG-fGrIGr~vlr~l~~~~ 109 (409)
|-| .|.||+.+++.|.++.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g 21 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERG 21 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCC
Confidence 557 9999999999999874
No 365
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=40.25 E-value=56 Score=34.24 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.8
Q ss_pred eeeEEEEcC-ChhHHHHHHHHHhCC
Q 015291 86 KLKVAINGF-GRIGRNFLRCWHGRK 109 (409)
Q Consensus 86 ~ikVaInGf-GrIGr~vlr~l~~~~ 109 (409)
++||+|.|. |+||-.++-.|..+.
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~ 68 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGE 68 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcc
Confidence 589999997 999999998887653
No 366
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=39.69 E-value=67 Score=31.36 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=25.0
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCC
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~ 121 (409)
+|.|+| .|.||+.+++++.... .+++++.+.
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g---~~v~~~~~~ 180 (341)
T cd08290 149 WVIQNGANSAVGQAVIQLAKLLG---IKTINVVRD 180 (341)
T ss_pred EEEEccchhHHHHHHHHHHHHcC---CeEEEEEcC
Confidence 689999 7999999999887664 677777654
No 367
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=39.67 E-value=31 Score=36.96 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=25.5
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+|||+|+|++|+.+.+.|.++. ++|++.|.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G---~~V~v~dr 30 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG---FTVSVYNR 30 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC---CeEEEEeC
Confidence 4899999999999999998764 68877765
No 368
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=39.57 E-value=39 Score=32.24 Aligned_cols=30 Identities=23% Similarity=0.446 Sum_probs=24.2
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
||.|.| +|.||+.+++.|.++. .+|+++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g---~~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG---RVVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC---CEEEEeCC
Confidence 588999 8999999999998764 47766643
No 369
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=39.53 E-value=1.8e+02 Score=28.39 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=22.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEe
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~-~vVaIn 119 (409)
-+|.|+|.|.+|+.+++++..+. + .++++.
T Consensus 167 ~~VLI~g~g~vG~~~~~lak~~G---~~~v~~~~ 197 (339)
T cd08232 167 KRVLVTGAGPIGALVVAAARRAG---AAEIVATD 197 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEEC
Confidence 36889999999999998887653 4 455553
No 370
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=39.28 E-value=82 Score=30.50 Aligned_cols=127 Identities=18% Similarity=0.190 Sum_probs=63.6
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~ 166 (409)
+|.|+| .|.||+.+++++..+. .+++++... +.+ -+ +|- +. .++.+.. .+.
T Consensus 165 ~vlI~g~~g~vg~~~~~~a~~~G---~~v~~~~~~---~~~---~~----~g~----------~~-~~~~~~~----~~~ 216 (325)
T cd08264 165 TVVVFGASGNTGIFAVQLAKMMG---AEVIAVSRK---DWL---KE----FGA----------DE-VVDYDEV----EEK 216 (325)
T ss_pred EEEEECCCchHHHHHHHHHHHcC---CeEEEEeHH---HHH---HH----hCC----------Ce-eecchHH----HHH
Confidence 689999 5999999999887664 566665421 111 11 110 00 1111110 011
Q ss_pred CCCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEecCCccccCcCCCcEEecCCcchhhhH
Q 015291 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLA 246 (409)
Q Consensus 167 p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~~~dvP~vV~gVN~~~~~~~~~~IISnaSCTTn~La 246 (409)
...+ . .++|+|++|+|. ...+.+-.+++.+.+-+.+..+. +.. ..+|...+......++.+..++-..+.
T Consensus 217 l~~~--~-~~~d~vl~~~g~-~~~~~~~~~l~~~g~~v~~g~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (325)
T cd08264 217 VKEI--T-KMADVVINSLGS-SFWDLSLSVLGRGGRLVTFGTLT-GGE-----VKLDLSDLYSKQISIIGSTGGTRKELL 286 (325)
T ss_pred HHHH--h-CCCCEEEECCCH-HHHHHHHHhhccCCEEEEEecCC-CCC-----CccCHHHHhhcCcEEEEccCCCHHHHH
Confidence 1111 1 378999999996 35556667777766444443321 111 233333221111345554444444555
Q ss_pred HHHHHH
Q 015291 247 PFVKVM 252 (409)
Q Consensus 247 pvlk~L 252 (409)
.+++.+
T Consensus 287 ~~~~l~ 292 (325)
T cd08264 287 ELVKIA 292 (325)
T ss_pred HHHHHH
Confidence 555555
No 371
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=39.15 E-value=41 Score=35.63 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=26.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~ 121 (409)
-||-|+|.|-+|+.+++.|.++.. -.|.-+|..
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~--~~i~IaNRT 211 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGV--KKITIANRT 211 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCC--CEEEEEcCC
Confidence 469999999999999999998753 355556654
No 372
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=38.76 E-value=44 Score=35.88 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=25.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
|||+|.|.|.||-.+.-+|.++. ..++|+++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g-~g~~V~gvD 33 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKC-PDIEVVVVD 33 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCCeEEEEE
Confidence 68999999999999888887653 236887774
No 373
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=38.55 E-value=95 Score=29.83 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=23.4
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
+|.|+| .|.+|+.+++.+.... ..++++.
T Consensus 165 ~vlI~ga~g~vG~~~~~~a~~~g---~~v~~~~ 194 (332)
T cd08259 165 TVLVTGAGGGVGIHAIQLAKALG---ARVIAVT 194 (332)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---CeEEEEe
Confidence 699999 7999999999987664 5666554
No 374
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=38.29 E-value=65 Score=29.33 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=24.4
Q ss_pred EEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCC
Q 015291 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 89 VaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~ 121 (409)
|-|.| +|-||+.+++.|.++. .+|+++...
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g---~~v~~~~~~ 31 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG---HEVIVLSRS 31 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---TEEEEEESC
T ss_pred EEEEccCCHHHHHHHHHHHHcC---Ccccccccc
Confidence 67899 9999999999999875 466666654
No 375
>PRK07326 short chain dehydrogenase; Provisional
Probab=38.15 E-value=47 Score=30.51 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=25.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
.+|-|.| .|.||+.+++.|.++. .+|+++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g---~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEG---YKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCC---CEEEEeeC
Confidence 4799999 9999999999998764 57777753
No 376
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=37.84 E-value=13 Score=41.41 Aligned_cols=24 Identities=42% Similarity=0.674 Sum_probs=21.3
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~ 109 (409)
..||.|+|.|-+|-.+++.|..-.
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~G 361 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWG 361 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcC
Confidence 468999999999999999998654
No 377
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=37.62 E-value=26 Score=35.07 Aligned_cols=36 Identities=36% Similarity=0.527 Sum_probs=27.3
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCC------CCceEEEEeCC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKD------SPLDVVVVNDS 121 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~------~~~~vVaInd~ 121 (409)
+++|+|+|+|-|||.+|+.+..... -.+.||+|.+.
T Consensus 3 ~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~ 44 (364)
T KOG0455|consen 3 KVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDS 44 (364)
T ss_pred cccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecc
Confidence 5789999999999999987754211 13788888774
No 378
>PRK05086 malate dehydrogenase; Provisional
Probab=37.52 E-value=49 Score=33.32 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=18.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHh
Q 015291 87 LKVAING-FGRIGRNFLRCWHG 107 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~ 107 (409)
|||+|.| .|+||+.++..|..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~ 22 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKT 22 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHc
Confidence 5899999 59999999987754
No 379
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=37.27 E-value=33 Score=31.77 Aligned_cols=22 Identities=27% Similarity=0.735 Sum_probs=18.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~ 109 (409)
++.|.|||.+||-+.+.|....
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~G 46 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGLG 46 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT
T ss_pred EEEEeCCCcccHHHHHHHhhCC
Confidence 7999999999999999998764
No 380
>PRK14851 hypothetical protein; Provisional
Probab=37.18 E-value=15 Score=41.29 Aligned_cols=97 Identities=20% Similarity=0.184 Sum_probs=48.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC-CCChhhhhhhhcc-cccccccCceEEEecCCeEEEC-CeEEEEEe
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND-SGGVKNASHLLKY-DSLLGTFKADVKIVDNETISVD-GKLIKVVS 163 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd-~~~~~~~a~Ll~y-DS~~G~f~~~v~~~~~~~l~v~-gk~I~v~~ 163 (409)
-||+|+|.|-+|-.++..|....-..+.| |.. ..+...+-.-+-| .+..|+.+.++-. ..-..+| +-+|.++.
T Consensus 44 ~~VlIvG~GGlGs~va~~Lar~GVG~l~L--vD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~--~~l~~inP~~~I~~~~ 119 (679)
T PRK14851 44 AKVAIPGMGGVGGVHLITMVRTGIGRFHI--ADFDQFEPVNVNRQFGARVPSFGRPKLAVMK--EQALSINPFLEITPFP 119 (679)
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCeEEE--EcCCEecccccccCcCcChhhCCCHHHHHHH--HHHHHhCCCCeEEEEe
Confidence 58999999999999999887543332332 221 1223233221211 2333554433321 1111133 22344443
Q ss_pred cC-CCCCCCccccCccEEEeCCCCC
Q 015291 164 NR-DPLQLPWAELGIDIVIEGTGVF 187 (409)
Q Consensus 164 ~~-~p~~l~W~~~gvDiVle~TG~f 187 (409)
+. ++++++.--.++|+||+|+-.|
T Consensus 120 ~~i~~~n~~~~l~~~DvVid~~D~~ 144 (679)
T PRK14851 120 AGINADNMDAFLDGVDVVLDGLDFF 144 (679)
T ss_pred cCCChHHHHHHHhCCCEEEECCCCC
Confidence 32 2333321112799999999865
No 381
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=37.14 E-value=33 Score=34.09 Aligned_cols=99 Identities=15% Similarity=0.222 Sum_probs=50.2
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC--CCh-hhhhhhhcccccccccCceEEEecCCeEEECC-eEEE---
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGV-KNASHLLKYDSLLGTFKADVKIVDNETISVDG-KLIK--- 160 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~--~~~-~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~g-k~I~--- 160 (409)
+|.|.|-|-||--++++|....-..+.++=-.+. .+. .++ |.+. ++.|+-+-++- .+.-..||= -++.
T Consensus 32 ~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi-~A~~--~~iGk~Kv~vm--~eri~~InP~c~V~~~~ 106 (263)
T COG1179 32 HVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQI-HALL--GDIGKPKVEVM--KERIKQINPECEVTAIN 106 (263)
T ss_pred cEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhh-Hhhh--hhcccHHHHHH--HHHHHhhCCCceEeehH
Confidence 7999999999999999998654333443222221 111 222 2221 33455432222 111111221 0111
Q ss_pred -EEecCCCCCCCccccCccEEEeCCCCCCChhhH
Q 015291 161 -VVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGA 193 (409)
Q Consensus 161 -v~~~~~p~~l~W~~~gvDiVle~TG~f~s~e~a 193 (409)
.+.+.+.+++-.. +.||||||.-....+...
T Consensus 107 ~f~t~en~~~~~~~--~~DyvIDaiD~v~~Kv~L 138 (263)
T COG1179 107 DFITEENLEDLLSK--GFDYVIDAIDSVRAKVAL 138 (263)
T ss_pred hhhCHhHHHHHhcC--CCCEEEEchhhhHHHHHH
Confidence 1122334444333 789999999877666433
No 382
>PRK08017 oxidoreductase; Provisional
Probab=36.89 E-value=52 Score=30.64 Aligned_cols=30 Identities=23% Similarity=0.181 Sum_probs=24.3
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+|-|.| .|.||+.+++.|.++. .+|+++..
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g---~~v~~~~r 34 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRG---YRVLAACR 34 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCC---CEEEEEeC
Confidence 699999 7999999999998764 46766643
No 383
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=36.82 E-value=64 Score=32.38 Aligned_cols=29 Identities=17% Similarity=0.040 Sum_probs=22.9
Q ss_pred eEEEEcC-ChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 88 KVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 88 kVaInGf-GrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
+|.|+|. |.||...++++..+. .+|+++.
T Consensus 161 ~VlV~GaaG~vG~~aiqlAk~~G---~~Vi~~~ 190 (348)
T PLN03154 161 SVFVSAASGAVGQLVGQLAKLHG---CYVVGSA 190 (348)
T ss_pred EEEEecCccHHHHHHHHHHHHcC---CEEEEEc
Confidence 6999995 999999998887654 5776654
No 384
>PLN02827 Alcohol dehydrogenase-like
Probab=36.71 E-value=72 Score=32.45 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=21.8
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCc-eEEEE
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPL-DVVVV 118 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~-~vVaI 118 (409)
+|.|.|.|.||..+++++..+. . .|+++
T Consensus 196 ~VlV~G~G~vG~~~iqlak~~G---~~~vi~~ 224 (378)
T PLN02827 196 SVVIFGLGTVGLSVAQGAKLRG---ASQIIGV 224 (378)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCeEEEE
Confidence 6899999999999998877653 4 35555
No 385
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=36.57 E-value=74 Score=24.74 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=20.0
Q ss_pred eEEEEcCChhHHHHHHHHHhCC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~ 109 (409)
||.|+|-|.||-.+...|.++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g 22 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG 22 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhC
Confidence 6899999999999999998764
No 386
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=36.49 E-value=36 Score=33.92 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=18.0
Q ss_pred EEEEcCChhHHHHHHHHHhCC
Q 015291 89 VAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 89 VaInGfGrIGr~vlr~l~~~~ 109 (409)
|+|+|.|.||..++-.|....
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~ 21 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKG 21 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcC
Confidence 689999999999998887653
No 387
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=36.49 E-value=52 Score=33.34 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.3
Q ss_pred eeeEEEEcC-ChhHHHHHHHHHhC
Q 015291 86 KLKVAINGF-GRIGRNFLRCWHGR 108 (409)
Q Consensus 86 ~ikVaInGf-GrIGr~vlr~l~~~ 108 (409)
++||+|.|. |.||..++..|..+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~ 25 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKG 25 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC
Confidence 579999995 99999999988764
No 388
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.46 E-value=65 Score=33.34 Aligned_cols=102 Identities=19% Similarity=0.094 Sum_probs=51.6
Q ss_pred cccccceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChh-hhhhhhcccccccccCceEEEecCCeEEECCeE
Q 015291 80 KKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVK-NASHLLKYDSLLGTFKADVKIVDNETISVDGKL 158 (409)
Q Consensus 80 ~~~~~m~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~-~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~ 158 (409)
++...+.-||.|.|.|.||-..+..+.... --+|| |-|+.+.+ .+|.-| ..++-. ....+.
T Consensus 164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G--A~~VV-i~d~~~~Rle~Ak~~---------Ga~~~~------~~~~~~ 225 (354)
T KOG0024|consen 164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMG--ASDVV-ITDLVANRLELAKKF---------GATVTD------PSSHKS 225 (354)
T ss_pred hcCcccCCeEEEECCcHHHHHHHHHHHHcC--CCcEE-EeecCHHHHHHHHHh---------CCeEEe------eccccc
Confidence 344444568999999999977666655442 23544 44543211 122222 222110 000000
Q ss_pred -EEEEecCCCCCCCccccCccEEEeCCCCCCChhhHHHHHHcCC
Q 015291 159 -IKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (409)
Q Consensus 159 -I~v~~~~~p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGa 201 (409)
+..+.+ -.+.. .++...|++|||||...+.+.|-..++.|=
T Consensus 226 ~~~~~~~-~v~~~-~g~~~~d~~~dCsG~~~~~~aai~a~r~gG 267 (354)
T KOG0024|consen 226 SPQELAE-LVEKA-LGKKQPDVTFDCSGAEVTIRAAIKATRSGG 267 (354)
T ss_pred cHHHHHH-HHHhh-ccccCCCeEEEccCchHHHHHHHHHhccCC
Confidence 000000 01111 112248999999999998887776666554
No 389
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=36.35 E-value=98 Score=29.71 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=22.2
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
+|.|+| .|.+|..+++++..+. .+|+++.
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g---~~v~~~~ 178 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKLG---YTVVALT 178 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHcC---CEEEEEe
Confidence 689999 6999999998877654 4655443
No 390
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=36.24 E-value=37 Score=29.31 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=26.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC-CCChhhhhh
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND-SGGVKNASH 129 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd-~~~~~~~a~ 129 (409)
.||.|.|.|.+|-.+++.|....-. ++.-+.+ ..+.+.+.+
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~--~i~lvD~d~v~~~nl~r 44 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVG--KITLVDDDIVEPSNLNR 44 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTS--EEEEEESSBB-GGGCCT
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCC--ceeecCCcceeeccccc
Confidence 4899999999999999998754322 3333433 234444444
No 391
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=36.22 E-value=68 Score=31.45 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=22.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCce-EEEEeC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVND 120 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~-vVaInd 120 (409)
+|.|.|-|.+|+.+++++..+. .+ ++++..
T Consensus 171 ~vlI~g~g~vg~~~~~lak~~G---~~~v~~~~~ 201 (345)
T cd08287 171 TVVVVGDGAVGLCAVLAAKRLG---AERIIAMSR 201 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCEEEEECC
Confidence 6888999999999988877653 44 555543
No 392
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=36.10 E-value=18 Score=38.58 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.6
Q ss_pred eeeEEEEcC-ChhHHHHHHHHHhC
Q 015291 86 KLKVAINGF-GRIGRNFLRCWHGR 108 (409)
Q Consensus 86 ~ikVaInGf-GrIGr~vlr~l~~~ 108 (409)
++||+|.|. |.||-.++-.|..+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 689999997 99999999888765
No 393
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=35.97 E-value=15 Score=37.94 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=20.9
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~ 109 (409)
.-||.|.|.|-+|-.++..|....
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~G 64 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAG 64 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC
Confidence 458999999999999999998654
No 394
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=35.89 E-value=1.4e+02 Score=28.76 Aligned_cols=29 Identities=17% Similarity=0.109 Sum_probs=23.2
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
+|.|+| .|.+|+.+++++.... .+++++.
T Consensus 148 ~vlI~g~~g~ig~~~~~~a~~~G---~~vi~~~ 177 (329)
T cd05288 148 TVVVSAAAGAVGSVVGQIAKLLG---ARVVGIA 177 (329)
T ss_pred EEEEecCcchHHHHHHHHHHHcC---CEEEEEe
Confidence 689999 7999999988887654 5766664
No 395
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=35.88 E-value=73 Score=31.10 Aligned_cols=30 Identities=20% Similarity=0.156 Sum_probs=23.4
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+|.|+| .|.||+.+++++..+. .+++++..
T Consensus 141 ~VLI~ga~g~vG~~aiqlAk~~G---~~Vi~~~~ 171 (325)
T TIGR02825 141 TVMVNAAAGAVGSVVGQIAKLKG---CKVVGAAG 171 (325)
T ss_pred EEEEeCCccHHHHHHHHHHHHcC---CEEEEEeC
Confidence 699999 7999999998877653 56766643
No 396
>PF07683 CobW_C: Cobalamin synthesis protein cobW C-terminal domain; InterPro: IPR011629 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [].; PDB: 1NIJ_A.
Probab=35.83 E-value=41 Score=26.92 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=34.6
Q ss_pred EEEEEEEccCCCCHHHHHHHHHHcccC--CCCccccccCC-CeEEecCCCCCcc
Q 015291 330 VDLVVNVEKKGITAEDVNAAFRKAAEG--PLKGILAVCDV-PLVSVDFRCSDVS 380 (409)
Q Consensus 330 vdltv~lek~~vs~eeI~~al~~aa~~--~lkgil~~~e~-p~VS~Df~~~~~S 380 (409)
..++++.+++ ++.+.+.+.|.+...+ ..||++.+.++ ...-.+..+..+.
T Consensus 2 ~s~~~~~~~p-~~~~~l~~~l~~~~~~vlR~KG~v~~~~~~~~~~~q~v~~~~~ 54 (94)
T PF07683_consen 2 SSVTFEFDRP-FDPERLEAWLQELPGDVLRAKGIVWVADGPRRLVFQGVGGRYD 54 (94)
T ss_dssp EEEEEEESS--B-HHHHHHHHHHTTTTEEEEEEEE-BTT-SEEEEEEEETTEEE
T ss_pred EEEEEEeCCC-CCHHHHHHHHHhCCCCEEEEEEEEEeCCcCeEEEEEeeCCEEE
Confidence 3678899999 9999999999995544 57999999887 3455566665544
No 397
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=35.74 E-value=52 Score=33.64 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=25.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
.+|+|.|-|..||.+.+++..+. ++++++..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG---~~v~~~d~ 33 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLG---YKVIVLDP 33 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CEEEEEeC
Confidence 47999999999999999888764 78777754
No 398
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=35.69 E-value=1.9e+02 Score=29.62 Aligned_cols=34 Identities=15% Similarity=-0.077 Sum_probs=23.0
Q ss_pred cCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeC
Q 015291 175 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (409)
Q Consensus 175 ~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISa 208 (409)
.++|+|||++|.-...+.+-..++.+.+.+++..
T Consensus 256 ~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g 289 (410)
T cd08238 256 QGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAG 289 (410)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEc
Confidence 3799999999865555566667765555555544
No 399
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.64 E-value=1.4e+02 Score=29.81 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=18.5
Q ss_pred CccEEEeCCCCCCChhhHHHHHHcCCCEEEEe
Q 015291 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (409)
Q Consensus 176 gvDiVle~TG~f~s~e~a~~hl~aGakkVVIS 207 (409)
+.|+||-|||.-. ---..+++.|+ +||+
T Consensus 202 ~aDIvI~AtG~~~--~v~~~~lk~ga--vViD 229 (283)
T PRK14192 202 QADIIVGAVGKPE--LIKKDWIKQGA--VVVD 229 (283)
T ss_pred cCCEEEEccCCCC--cCCHHHcCCCC--EEEE
Confidence 6799999997432 22235677787 7774
No 400
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=35.32 E-value=2e+02 Score=29.64 Aligned_cols=31 Identities=29% Similarity=0.248 Sum_probs=22.6
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~ 121 (409)
+|.|.|.|.||..+++++..+. ..++.+.+.
T Consensus 188 ~VlV~G~G~iG~~aiqlAk~~G---a~~vi~~d~ 218 (393)
T TIGR02819 188 TVYIAGAGPVGLAAAASAQLLG---AAVVIVGDL 218 (393)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CceEEEeCC
Confidence 6888999999999998887653 454444443
No 401
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=35.29 E-value=1.5e+02 Score=28.77 Aligned_cols=138 Identities=17% Similarity=0.180 Sum_probs=68.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCCC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~p 167 (409)
+|.|+|.|.+|+.+++++.... ++|+++....+.+....+.++ |. +.+ +.+.-.. .+..
T Consensus 167 ~vlI~g~g~~g~~~~~la~~~G---~~v~~~~~~~~~~~~~~~~~~----g~----------~~~--~~~~~~~--~~~l 225 (306)
T cd08258 167 TVVVFGPGPIGLLAAQVAKLQG---ATVVVVGTEKDEVRLDVAKEL----GA----------DAV--NGGEEDL--AELV 225 (306)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CEEEEECCCCCHHHHHHHHHh----CC----------ccc--CCCcCCH--HHHH
Confidence 6788899999999999887764 566665321122222221111 10 000 0000000 0000
Q ss_pred CCCCccccCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEecCCcc-ccCcCCCcEEecCCcchhhhH
Q 015291 168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEK-DYDHEVANIVSNASCTTNCLA 246 (409)
Q Consensus 168 ~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps~~~dvP~vV~gVN~~-~~~~~~~~IISnaSCTTn~La 246 (409)
..+ ....++|++|+|.|.-...+.+..+++.+.+-+.++... + .+ +.+|.. .+... .+|..+-.++...+.
T Consensus 226 ~~~-~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~--~~---~~~~~~~~~~~~-~~i~g~~~~~~~~~~ 297 (306)
T cd08258 226 NEI-TDGDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFG-P--LA---ASIDVERIIQKE-LSVIGSRSSTPASWE 297 (306)
T ss_pred HHH-cCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccC-C--CC---cccCHHHHhhcC-cEEEEEecCchHhHH
Confidence 000 112368999999875333445567777665444344432 1 11 122222 22222 456666666677777
Q ss_pred HHHHHHHh
Q 015291 247 PFVKVMDE 254 (409)
Q Consensus 247 pvlk~L~~ 254 (409)
-+++.+++
T Consensus 298 ~~~~~~~~ 305 (306)
T cd08258 298 TALRLLAS 305 (306)
T ss_pred HHHHHHhc
Confidence 77776654
No 402
>PRK07023 short chain dehydrogenase; Provisional
Probab=35.18 E-value=52 Score=30.54 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=24.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
++|-|.| .|.||+.+.+.|.++. .+|+.+.
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G---~~v~~~~ 32 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPG---IAVLGVA 32 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCC---CEEEEEe
Confidence 4899999 9999999999998764 4665553
No 403
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=34.89 E-value=56 Score=30.56 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=24.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|+|-|.| .|.||+.+++.|.++. .+|+.+..
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G---~~V~~~~r 32 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG---HKVIATGR 32 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC---CEEEEEEC
Confidence 4789999 9999999999998764 46666643
No 404
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=34.67 E-value=62 Score=31.86 Aligned_cols=29 Identities=17% Similarity=0.059 Sum_probs=23.0
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
+|.|+| .|.||+.+++++..+. .+++++.
T Consensus 154 ~VlI~Ga~G~vG~~aiqlAk~~G---~~Vi~~~ 183 (338)
T cd08295 154 TVFVSAASGAVGQLVGQLAKLKG---CYVVGSA 183 (338)
T ss_pred EEEEecCccHHHHHHHHHHHHcC---CEEEEEe
Confidence 699999 6999999999887654 5666554
No 405
>PRK12320 hypothetical protein; Provisional
Probab=34.46 E-value=52 Score=37.14 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=25.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|||.|.| +|.||+.+++.|.++. .+|+++..
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G---~~Vi~ldr 32 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG---HTVSGIAQ 32 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEEEeC
Confidence 4899999 9999999999998764 58777764
No 406
>PRK06046 alanine dehydrogenase; Validated
Probab=33.64 E-value=62 Score=32.64 Aligned_cols=33 Identities=30% Similarity=0.219 Sum_probs=27.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~ 121 (409)
-+|||.|+|.+|+..++++... +.++.+.|-+.
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~--~~i~~v~v~~r 162 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEV--FDLEEVRVYDR 162 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhh--CCceEEEEECC
Confidence 5899999999999999998754 34788888776
No 407
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=33.19 E-value=40 Score=36.39 Aligned_cols=132 Identities=11% Similarity=0.192 Sum_probs=67.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhc-ccccccc--cCceEEEecCCeEE-ECCeEEEEE
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK-YDSLLGT--FKADVKIVDNETIS-VDGKLIKVV 162 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~-yDS~~G~--f~~~v~~~~~~~l~-v~gk~I~v~ 162 (409)
.+||++|+|..|+.+.+-|.++. ++|++-|.. .+...-+.+ ... .|- +...-+. .+.+. +.+-++-++
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G---~~V~V~NRt--~~k~~~l~~~~~~-~Ga~~~~~a~s~--~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKG---FPISVYNRT--TSKVDETVERAKK-EGNLPLYGFKDP--EDFVLSIQKPRSVII 78 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCC---CeEEEECCC--HHHHHHHHHhhhh-cCCcccccCCCH--HHHHhcCCCCCEEEE
Confidence 48999999999999999998765 688877753 222212221 000 010 0000000 00000 000111111
Q ss_pred ecCCCCC--------CCccccCccEEEeCCCCC--CChhhHHHHHHcCCCEEEEeCCCC-C----CCCCeEEecCCcccc
Q 015291 163 SNRDPLQ--------LPWAELGIDIVIEGTGVF--VDGPGAGKHIQAGAKKVIITAPAK-G----ADIPTYVVGVNEKDY 227 (409)
Q Consensus 163 ~~~~p~~--------l~W~~~gvDiVle~TG~f--~s~e~a~~hl~aGakkVVISaps~-~----~dvP~vV~gVN~~~~ 227 (409)
-..+.+. ++--+ .-|++||++-.. .+++.+....+.|+ -.|.+|-. + ..-|++.+|=+.+.|
T Consensus 79 ~v~~~~aV~~Vi~gl~~~l~-~G~iiID~sT~~~~~t~~~~~~l~~~Gi--~fldapVSGG~~gA~~G~~im~GG~~~a~ 155 (493)
T PLN02350 79 LVKAGAPVDQTIKALSEYME-PGDCIIDGGNEWYENTERRIKEAAEKGL--LYLGMGVSGGEEGARNGPSLMPGGSFEAY 155 (493)
T ss_pred ECCCcHHHHHHHHHHHhhcC-CCCEEEECCCCCHHHHHHHHHHHHHcCC--eEEeCCCcCCHHHhcCCCeEEecCCHHHH
Confidence 1111111 12111 238999998654 44455566667788 46777731 1 123689999998877
Q ss_pred Cc
Q 015291 228 DH 229 (409)
Q Consensus 228 ~~ 229 (409)
+.
T Consensus 156 ~~ 157 (493)
T PLN02350 156 KN 157 (493)
T ss_pred HH
Confidence 54
No 408
>PLN00198 anthocyanidin reductase; Provisional
Probab=33.05 E-value=58 Score=32.13 Aligned_cols=31 Identities=13% Similarity=0.139 Sum_probs=24.9
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 86 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
+.+|.|-| +|-||+.+++.|.++. .+|+++.
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g---~~V~~~~ 40 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKG---YAVNTTV 40 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCC---CEEEEEE
Confidence 35799999 9999999999998764 4765553
No 409
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=32.97 E-value=2.1e+02 Score=27.81 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=24.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
-++.|.|.|.+||.+++.|.+.. .+|..+|.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g---~~v~v~~R 148 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKAD---CNVIIANR 148 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 37999999999999999998753 46665664
No 410
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=32.70 E-value=1.6e+02 Score=28.87 Aligned_cols=29 Identities=28% Similarity=0.139 Sum_probs=22.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCce-EEEE
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVV 118 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~-vVaI 118 (409)
-+|.|+|.|.+|..+++++..+. .. |+++
T Consensus 164 ~~vlI~g~g~vG~~a~~lak~~G---~~~v~~~ 193 (343)
T cd05285 164 DTVLVFGAGPIGLLTAAVAKAFG---ATKVVVT 193 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEE
Confidence 37899999999999998887653 45 5555
No 411
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=32.66 E-value=80 Score=30.63 Aligned_cols=30 Identities=7% Similarity=0.011 Sum_probs=23.5
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+|.|.| .|.+|+.+++++..+. .+++++..
T Consensus 143 ~vlI~g~~g~ig~~~~~lak~~G---~~v~~~~~ 173 (327)
T PRK10754 143 QFLFHAAAGGVGLIACQWAKALG---AKLIGTVG 173 (327)
T ss_pred EEEEEeCCcHHHHHHHHHHHHcC---CEEEEEeC
Confidence 689997 9999999988877654 57766654
No 412
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=32.47 E-value=2.4e+02 Score=27.68 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=22.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCc-eEEEE
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPL-DVVVV 118 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~-~vVaI 118 (409)
+|.|+|.|.+|+.+++++.... . .++++
T Consensus 166 ~vlV~g~g~vg~~~~~la~~~G---~~~v~~~ 194 (341)
T cd05281 166 SVLITGCGPIGLMAIAVAKAAG---ASLVIAS 194 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CcEEEEE
Confidence 6899999999999998887653 4 46666
No 413
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=32.42 E-value=63 Score=32.40 Aligned_cols=144 Identities=17% Similarity=0.187 Sum_probs=71.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~ 166 (409)
+||+|.|.|.+|..++.++..+.. .+|+.+.-..+... +..+ |-.|.. ... . .. ..|+. ..+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~--~~VvlvDi~~~l~~-g~a~--d~~~~~---~~~---~----~~-~~i~~--t~d 63 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKEL--ADLVLLDVVEGIPQ-GKAL--DMYEAS---PVG---G----FD-TKVTG--TNN 63 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCC--CeEEEEeCCCChhH-HHHH--hhhhhh---hcc---C----CC-cEEEe--cCC
Confidence 489999999999999998887532 25554433212211 1111 211110 000 0 11 12332 123
Q ss_pred CCCCCccccCccEEEeCCCCCCCh------------hhHHH----HHHc--CCCEEEEeCCCCCCCCCe-EEecCCcccc
Q 015291 167 PLQLPWAELGIDIVIEGTGVFVDG------------PGAGK----HIQA--GAKKVIITAPAKGADIPT-YVVGVNEKDY 227 (409)
Q Consensus 167 p~~l~W~~~gvDiVle~TG~f~s~------------e~a~~----hl~a--GakkVVISaps~~~dvP~-vV~gVN~~~~ 227 (409)
.+++ .+.|+||-|.|.-... +.... -.+. .++-+++|+|. |+-+ ++... ..+
T Consensus 64 ~~~~----~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~---di~t~~~~~~--sg~ 134 (305)
T TIGR01763 64 YADT----ANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL---DAMTYVAWQK--SGF 134 (305)
T ss_pred HHHh----CCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHH--HCc
Confidence 3333 2789999999953321 11111 1112 23334446764 2211 11111 112
Q ss_pred CcCCCcEEecCCcchhhhHHHHHHHHhhcCccEE
Q 015291 228 DHEVANIVSNASCTTNCLAPFVKVMDEELGIVKG 261 (409)
Q Consensus 228 ~~~~~~IISnaSCTTn~Lapvlk~L~~~fGI~~~ 261 (409)
. +++|| +.||.---+.+-+.|.+.+|+..-
T Consensus 135 ~--~~rvi--G~g~~lds~R~~~~la~~l~v~~~ 164 (305)
T TIGR01763 135 P--KERVI--GQAGVLDSARFRTFIAMELGVSVQ 164 (305)
T ss_pred C--HHHEE--EeccchHHHHHHHHHHHHhCcCHH
Confidence 2 26787 356666667888889999988743
No 414
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=32.41 E-value=63 Score=32.13 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~ 109 (409)
|||+|.|.|.+|..+...|.+..
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g 23 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKK 23 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC
Confidence 48999999999999999887653
No 415
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=32.26 E-value=72 Score=29.12 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=25.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
.+|.|.| .|.||+.+++.|.++. .+|+.+..
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g---~~v~~~~r 37 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADG---AKVVIYDS 37 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 4799999 9999999999998764 46666654
No 416
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=31.96 E-value=1.2e+02 Score=29.97 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=19.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~ 109 (409)
=+|.|+|.|.||..+++++..+.
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~G 190 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLRG 190 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC
Confidence 36999999999999998876553
No 417
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=31.51 E-value=1.5e+02 Score=29.14 Aligned_cols=28 Identities=29% Similarity=0.248 Sum_probs=21.5
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCc-eEEEE
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPL-DVVVV 118 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~-~vVaI 118 (409)
+|.|+|-|.+|+.+++++.... . .|+++
T Consensus 166 ~vlV~~~g~vg~~~~~la~~~G---~~~v~~~ 194 (341)
T PRK05396 166 DVLITGAGPIGIMAAAVAKHVG---ARHVVIT 194 (341)
T ss_pred eEEEECCCHHHHHHHHHHHHcC---CCEEEEE
Confidence 7899999999999988876553 4 45555
No 418
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=31.09 E-value=80 Score=27.29 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=22.5
Q ss_pred EEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 89 VaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|+|.|.|.||..+.-.|.+.. .+|..+-.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g---~~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG---HDVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT---CEEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCC---CceEEEEc
Confidence 789999999999998887643 46655654
No 419
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=30.82 E-value=2.1e+02 Score=29.95 Aligned_cols=82 Identities=21% Similarity=0.265 Sum_probs=46.2
Q ss_pred eEEEEcCChhHHH-HHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 015291 88 KVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (409)
Q Consensus 88 kVaInGfGrIGr~-vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~ 166 (409)
+|-++|.|.+|.. ++|.|..+. .+|. +.|....+...+|-+ . | +.++...+
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G---~~v~-~~D~~~~~~~~~l~~-----------------~-----g--i~~~~g~~ 52 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRG---YQVS-GSDIAENATTKRLEA-----------------L-----G--IPIYIGHS 52 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCC---CeEE-EECCCcchHHHHHHH-----------------C-----c--CEEeCCCC
Confidence 4778999999998 899998764 4654 445311111111110 0 1 12221123
Q ss_pred CCCCCccccCccEEEeCCCCCCChhhHHHHHHcCC
Q 015291 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (409)
Q Consensus 167 p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~aGa 201 (409)
++.++ +.|+|+-+.|.-.+.+......+.|.
T Consensus 53 ~~~~~----~~d~vV~spgi~~~~p~~~~a~~~~i 83 (448)
T TIGR01082 53 AENLD----DADVVVVSAAIKDDNPEIVEAKERGI 83 (448)
T ss_pred HHHCC----CCCEEEECCCCCCCCHHHHHHHHcCC
Confidence 33343 47888888888766655555555555
No 420
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=30.51 E-value=63 Score=32.00 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRK 109 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~ 109 (409)
.||-|.| +|-||+.+++.|.++.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g 25 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINET 25 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcC
Confidence 3899999 9999999999998764
No 421
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.42 E-value=77 Score=29.46 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=25.1
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 86 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
...|-|.| .|.||+.+++.|.++. .+|+.+..
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g---~~vi~~~r 34 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAG---FDLAINDR 34 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCC---CEEEEEec
Confidence 33588889 9999999999998764 47776653
No 422
>PLN02583 cinnamoyl-CoA reductase
Probab=30.41 E-value=73 Score=31.11 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=25.0
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+|.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 8 ~vlVTGatG~IG~~lv~~Ll~~G---~~V~~~~R 38 (297)
T PLN02583 8 SVCVMDASGYVGFWLVKRLLSRG---YTVHAAVQ 38 (297)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC---CEEEEEEc
Confidence 689999 9999999999998764 57777653
No 423
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=30.29 E-value=70 Score=29.43 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=25.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
.+|.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g---~~V~~~~r 38 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADG---AEVIVVDI 38 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCC---CEEEEEeC
Confidence 4799999 9999999999998764 47776654
No 424
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=30.22 E-value=63 Score=33.16 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=25.7
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhC----CCCCceEEEEeCC
Q 015291 85 AKLKVAINGFGRIGRNFLRCWHGR----KDSPLDVVVVNDS 121 (409)
Q Consensus 85 m~ikVaInGfGrIGr~vlr~l~~~----~~~~~~vVaInd~ 121 (409)
+++||||+|-|.||-.-+-++.++ ..|..+|-.|.|.
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 457999999999998777666552 2344556556663
No 425
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=30.19 E-value=63 Score=32.54 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=19.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~ 109 (409)
|||+|.|.|.||-.+.-.|....
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g 23 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG 23 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC
Confidence 58999999999999988887654
No 426
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=30.17 E-value=65 Score=35.60 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=26.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+||.|-| +|-||+.+++.|.++. ..+|+++..
T Consensus 316 ~~VLVTGatGFIGs~Lv~~Ll~~~--g~~V~~l~r 348 (660)
T PRK08125 316 TRVLILGVNGFIGNHLTERLLRDD--NYEVYGLDI 348 (660)
T ss_pred CEEEEECCCchHHHHHHHHHHhCC--CcEEEEEeC
Confidence 5899999 9999999999998642 268888864
No 427
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=30.02 E-value=84 Score=28.39 Aligned_cols=30 Identities=27% Similarity=0.135 Sum_probs=24.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
-||-|+|-|.+|...++.|.+.. -+|+.|+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~g---a~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTG---AFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEc
Confidence 47999999999999999988754 3555564
No 428
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=29.94 E-value=17 Score=30.41 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=25.4
Q ss_pred cCccEEEeCCCCCCChhhHHHHHHcCCCEEEEeCCC
Q 015291 175 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (409)
Q Consensus 175 ~gvDiVle~TG~f~s~e~a~~hl~aGakkVVISaps 210 (409)
.++|+||||+|.-...+.+-..++.|.+-|++..+.
T Consensus 57 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 57 RGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccC
Confidence 379999999996555566667777776555555543
No 429
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=29.72 E-value=69 Score=31.39 Aligned_cols=30 Identities=17% Similarity=0.048 Sum_probs=23.3
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCc-eEEEEeC
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPL-DVVVVND 120 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~-~vVaInd 120 (409)
+|.|+| .|.||...++++..+. . +|+++..
T Consensus 157 ~VlI~ga~g~vG~~aiqlAk~~G---~~~Vi~~~~ 188 (345)
T cd08293 157 TMVVSGAAGACGSLAGQIGRLLG---CSRVVGICG 188 (345)
T ss_pred EEEEECCCcHHHHHHHHHHHHcC---CCEEEEEcC
Confidence 799999 5999999998877653 4 6776643
No 430
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=29.71 E-value=1.7e+02 Score=28.38 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=23.7
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+|.|+| .|.+|+.+++++..... .+++++..
T Consensus 152 ~vlV~g~~g~vg~~~~~~a~~~G~--~~v~~~~~ 183 (336)
T cd08252 152 TLLIIGGAGGVGSIAIQLAKQLTG--LTVIATAS 183 (336)
T ss_pred EEEEEcCCchHHHHHHHHHHHcCC--cEEEEEcC
Confidence 689999 79999999988876531 56666644
No 431
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=29.64 E-value=2.6e+02 Score=28.37 Aligned_cols=28 Identities=25% Similarity=0.190 Sum_probs=21.8
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEE
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaI 118 (409)
+|.|+| .|.||+.+++++..+. ..++.+
T Consensus 192 ~vlV~Ga~g~vG~~ai~~ak~~G---~~vi~~ 220 (398)
T TIGR01751 192 NVLIWGAAGGLGSYATQLARAGG---GNPVAV 220 (398)
T ss_pred EEEEEcCCcHHHHHHHHHHHHcC---CeEEEE
Confidence 789999 5999999988877653 455555
No 432
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=29.21 E-value=60 Score=30.71 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=23.6
Q ss_pred EEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 89 VaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|-|-| +|.||+.+++.|.++. .+|++++.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r 30 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG---HEVTILTR 30 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC---CEEEEEeC
Confidence 35788 9999999999998764 68887775
No 433
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=29.19 E-value=1.2e+02 Score=29.56 Aligned_cols=30 Identities=30% Similarity=0.420 Sum_probs=24.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+|.|+|.|.+|+.+++++..+. ++++++..
T Consensus 162 ~vLI~g~g~vG~~a~~lA~~~g---~~v~~~~~ 191 (337)
T cd08261 162 TVLVVGAGPIGLGVIQVAKARG---ARVIVVDI 191 (337)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CeEEEECC
Confidence 6899999999999999887764 67776643
No 434
>PRK08223 hypothetical protein; Validated
Probab=29.18 E-value=38 Score=34.07 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~ 109 (409)
-||.|+|.|-+|-.++..|....
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aG 50 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLG 50 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhC
Confidence 48999999999999999887543
No 435
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=29.17 E-value=1.2e+02 Score=29.91 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=18.8
Q ss_pred eEEEEcCChhHHHHHHHHHhCC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~ 109 (409)
+|.|+|.|.+|..+++++....
T Consensus 178 ~vlI~g~g~vg~~~~~~a~~~G 199 (350)
T cd08240 178 PVVIIGAGGLGLMALALLKALG 199 (350)
T ss_pred EEEEECCcHHHHHHHHHHHHcC
Confidence 6899999999999988887653
No 436
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=28.81 E-value=81 Score=29.23 Aligned_cols=31 Identities=26% Similarity=0.167 Sum_probs=24.3
Q ss_pred ceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEE
Q 015291 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (409)
Q Consensus 85 m~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaI 118 (409)
|+.+|.|.| .|.||+.+++.|.++. .+|+.+
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g---~~v~~~ 32 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARG---WSVGIN 32 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCC---CEEEEE
Confidence 445799999 8999999999998764 465543
No 437
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=28.66 E-value=74 Score=34.36 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=25.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
.||||+|.|..|+-+...+.... ++|+.++-
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG---~~V~l~d~ 36 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAG---HQVLLYDI 36 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCC---CeEEEEeC
Confidence 37999999999999999988654 68776654
No 438
>PRK12827 short chain dehydrogenase; Provisional
Probab=28.62 E-value=84 Score=28.86 Aligned_cols=30 Identities=30% Similarity=0.457 Sum_probs=24.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
++|-|.| .|.||+.+++.|.++. .+|+.+.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g---~~v~~~~ 37 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADG---ADVIVLD 37 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CeEEEEc
Confidence 5799999 9999999999998764 4666654
No 439
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=28.53 E-value=75 Score=34.30 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=24.8
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
||||+|.|.+|+-+.+.+.... ++|+..+-
T Consensus 9 ~V~VIGaG~MG~gIA~~la~aG---~~V~l~D~ 38 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQAG---HTVLLYDA 38 (507)
T ss_pred EEEEECCCHHHHHHHHHHHhCC---CeEEEEeC
Confidence 6999999999999999887653 68776653
No 440
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=28.49 E-value=47 Score=34.74 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=20.8
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~ 109 (409)
+.+|||.|||-.||.+.+-+....
T Consensus 52 tl~IaIIGfGnmGqflAetli~aG 75 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAG 75 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcC
Confidence 579999999999999998887653
No 441
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=28.48 E-value=75 Score=30.41 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=23.4
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
||-|.| .|-||+.+++.|.++. .+|+++.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g---~~V~~~~ 30 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG---HEVVVLD 30 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC---CeEEEEe
Confidence 578999 9999999999998764 4666654
No 442
>PRK08267 short chain dehydrogenase; Provisional
Probab=28.46 E-value=88 Score=29.34 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=24.0
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
++-|.| .|.||+.+.+.|.++. .+|+.+.
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G---~~V~~~~ 32 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEG---WRVGAYD 32 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCC---CeEEEEe
Confidence 589999 9999999999998764 4676665
No 443
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=28.39 E-value=30 Score=33.57 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=17.4
Q ss_pred EEEEcC-ChhHHHHHHHHHhC
Q 015291 89 VAINGF-GRIGRNFLRCWHGR 108 (409)
Q Consensus 89 VaInGf-GrIGr~vlr~l~~~ 108 (409)
|+|.|. |.+|..++..|...
T Consensus 1 I~IIGagG~vG~~ia~~l~~~ 21 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG 21 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC
Confidence 689998 99999999988755
No 444
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=28.38 E-value=74 Score=35.54 Aligned_cols=33 Identities=30% Similarity=0.469 Sum_probs=25.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
.||+|+|+|.+|+.+++.|..... ..+|++++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~-~~~V~~~d~ 36 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGL-AREVVAVDR 36 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCC-CCEEEEEEC
Confidence 479999999999999999986531 135666653
No 445
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=28.27 E-value=70 Score=33.35 Aligned_cols=27 Identities=15% Similarity=0.407 Sum_probs=22.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEE
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVV 117 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVa 117 (409)
|||.|.|+|+.|+.++|.|. +. .+|++
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G---~~V~~ 27 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KF---GGVDI 27 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CC---CeEEE
Confidence 47999999999999999998 64 45543
No 446
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=28.26 E-value=55 Score=33.13 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=19.7
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhCC
Q 015291 87 LKVAINGF-GRIGRNFLRCWHGRK 109 (409)
Q Consensus 87 ikVaInGf-GrIGr~vlr~l~~~~ 109 (409)
|||+|.|. |.||..++-.|..+.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~ 24 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNP 24 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC
Confidence 58999997 999999998887553
No 447
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=28.23 E-value=1.2e+02 Score=29.82 Aligned_cols=95 Identities=17% Similarity=0.093 Sum_probs=51.0
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhhcccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd~~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk~I~v~~~~~ 166 (409)
+|.|+| .|.+|+.+++++..+. +.|+++... +...++-+ +|. ... ++.+.... . +.
T Consensus 157 ~vlI~ga~g~vg~~~~~~a~~~G---~~v~~~~~~---~~~~~~~~----~g~-~~v----------~~~~~~~~-~-~~ 213 (339)
T cd08249 157 PVLIWGGSSSVGTLAIQLAKLAG---YKVITTASP---KNFDLVKS----LGA-DAV----------FDYHDPDV-V-ED 213 (339)
T ss_pred EEEEEcChhHHHHHHHHHHHHcC---CeEEEEECc---ccHHHHHh----cCC-CEE----------EECCCchH-H-HH
Confidence 689999 6999999999888764 566665432 22222211 121 001 11100000 0 00
Q ss_pred CCCCCccccCccEEEeCCCCCCChhhHHHHHHc--CCCEEEEe
Q 015291 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQA--GAKKVIIT 207 (409)
Q Consensus 167 p~~l~W~~~gvDiVle~TG~f~s~e~a~~hl~a--GakkVVIS 207 (409)
..++. ..++|+||+++|.-.....+..++.. |.+-|.+.
T Consensus 214 l~~~~--~~~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~g 254 (339)
T cd08249 214 IRAAT--GGKLRYALDCISTPESAQLCAEALGRSGGGKLVSLL 254 (339)
T ss_pred HHHhc--CCCeeEEEEeeccchHHHHHHHHHhccCCCEEEEec
Confidence 11111 13689999999863455666778877 66444443
No 448
>PRK05884 short chain dehydrogenase; Provisional
Probab=28.03 E-value=85 Score=29.16 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=23.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
||+-|.| .|.||+.+++.|.++. .+|+.+.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g---~~v~~~~ 31 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDG---HKVTLVG 31 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCC---CEEEEEe
Confidence 3789999 8999999999998764 4666554
No 449
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=27.89 E-value=1.1e+02 Score=30.61 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=18.8
Q ss_pred eEEEEcCChhHHHHHHHHHhCC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~ 109 (409)
+|.|+|-|.+|..+++++..+.
T Consensus 186 ~vlI~g~g~vG~~a~~~a~~~G 207 (365)
T cd05279 186 TCAVFGLGGVGLSVIMGCKAAG 207 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcC
Confidence 7899999999999988877653
No 450
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=27.76 E-value=90 Score=30.62 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=25.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
-+|.|.|.|.+||.++++|..+.. -+|..+|.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~--~~V~v~~R 155 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGV--AEITIVNR 155 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCC--CEEEEEeC
Confidence 379999999999999999987642 35655665
No 451
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=27.70 E-value=81 Score=31.25 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=25.2
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+|-|-| +|-||+.+++.|.++. .+|+++..
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~r 32 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKG---YEVHGLIR 32 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCC---CEEEEEec
Confidence 688999 9999999999998764 58887754
No 452
>PRK06924 short chain dehydrogenase; Provisional
Probab=27.70 E-value=89 Score=29.00 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=24.2
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+|-|.| .|.||+.+++.|.++. .+|+.+..
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g---~~V~~~~r 33 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKG---THVISISR 33 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcC---CEEEEEeC
Confidence 689999 9999999999998764 46665543
No 453
>PRK07236 hypothetical protein; Provisional
Probab=27.69 E-value=81 Score=31.93 Aligned_cols=34 Identities=15% Similarity=-0.022 Sum_probs=26.2
Q ss_pred cceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 84 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 84 ~m~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+|+++|.|+|-|..|-.+...|..+. ++++.+..
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G---~~v~v~E~ 37 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAG---WDVDVFER 37 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCC---CCEEEEec
Confidence 44679999999999999888887653 56655553
No 454
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=27.63 E-value=3.2e+02 Score=27.59 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=22.7
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEe
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~-~vVaIn 119 (409)
+|.|+|.|.||..+++++..+. . .|+++.
T Consensus 206 ~VlV~g~g~vG~~ai~lA~~~G---~~~vi~~~ 235 (384)
T cd08265 206 YVVVYGAGPIGLAAIALAKAAG---ASKVIAFE 235 (384)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCEEEEEc
Confidence 6899999999999998887664 4 455553
No 455
>PRK10537 voltage-gated potassium channel; Provisional
Probab=27.54 E-value=81 Score=33.03 Aligned_cols=30 Identities=20% Similarity=0.121 Sum_probs=24.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
=.|-|.|+|++|+.+++.|.++. .+++.|.
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g---~~vvVId 270 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRG---QAVTVIV 270 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCC---CCEEEEE
Confidence 35999999999999999987653 4666665
No 456
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=26.90 E-value=46 Score=33.03 Aligned_cols=22 Identities=45% Similarity=0.708 Sum_probs=18.1
Q ss_pred eeeEEEEcCChhHHH-HHHHHHh
Q 015291 86 KLKVAINGFGRIGRN-FLRCWHG 107 (409)
Q Consensus 86 ~ikVaInGfGrIGr~-vlr~l~~ 107 (409)
.|.|+++|+||.||. ++|+...
T Consensus 10 ~v~~~~vgtgrl~ra~~~ra~h~ 32 (289)
T COG5495 10 RVVVGIVGTGRLGRAALLRADHV 32 (289)
T ss_pred eeEEEEeecchHHHHHHHHhcch
Confidence 478999999999999 6677553
No 457
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=26.78 E-value=1.2e+02 Score=33.45 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=26.7
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
..||||.|-|..||.+++++.+.. ++++++..
T Consensus 22 ~k~IgIIGgGqlg~mla~aA~~lG---~~Vi~ld~ 53 (577)
T PLN02948 22 ETVVGVLGGGQLGRMLCQAASQMG---IKVKVLDP 53 (577)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 568999999999999999988764 78877743
No 458
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=26.64 E-value=56 Score=31.62 Aligned_cols=30 Identities=27% Similarity=0.298 Sum_probs=26.4
Q ss_pred CccEEEeCCCCCCChhhHHHHHHcCCCEEE
Q 015291 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205 (409)
Q Consensus 176 gvDiVle~TG~f~s~e~a~~hl~aGakkVV 205 (409)
++|+|++||+...-.+.+.+.+++|..-++
T Consensus 37 ~vDaVviatp~~~H~e~a~~aL~aGkhVl~ 66 (229)
T TIGR03855 37 DVDIVVEAASQEAVKEYAEKILKNGKDLLI 66 (229)
T ss_pred CCCEEEECCChHHHHHHHHHHHHCCCCEEE
Confidence 689999999999999999999999975433
No 459
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=26.50 E-value=1.6e+02 Score=28.67 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=23.3
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+|.|.|-|.+|+.+++++.... ..+|+++..
T Consensus 170 ~vlI~g~~~vg~~~~~~a~~~g--~~~v~~~~~ 200 (340)
T cd05284 170 TVVVIGVGGLGHIAVQILRALT--PATVIAVDR 200 (340)
T ss_pred EEEEEcCcHHHHHHHHHHHHhC--CCcEEEEeC
Confidence 6999997779999998887653 256766654
No 460
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=26.00 E-value=1.1e+02 Score=27.42 Aligned_cols=30 Identities=27% Similarity=0.254 Sum_probs=24.6
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
++.|.|.|..|+.+++.|..+ .++++++=|
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~---g~~vvgfid 30 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS---GWEIVGFLD 30 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC---CCEEEEEEc
Confidence 478999999999999998754 378887765
No 461
>PRK07411 hypothetical protein; Validated
Probab=25.97 E-value=28 Score=36.18 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=20.6
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~ 109 (409)
.-||.|+|.|-+|-.++..|....
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~G 61 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAG 61 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcC
Confidence 458999999999999999987654
No 462
>PRK15076 alpha-galactosidase; Provisional
Probab=25.95 E-value=57 Score=34.52 Aligned_cols=12 Identities=25% Similarity=0.268 Sum_probs=11.2
Q ss_pred eeEEEEcCChhH
Q 015291 87 LKVAINGFGRIG 98 (409)
Q Consensus 87 ikVaInGfGrIG 98 (409)
+||+|+|-|.+|
T Consensus 2 ~KIaIIGaGsvg 13 (431)
T PRK15076 2 PKITFIGAGSTV 13 (431)
T ss_pred cEEEEECCCHHH
Confidence 699999999998
No 463
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=25.93 E-value=84 Score=31.60 Aligned_cols=41 Identities=17% Similarity=0.400 Sum_probs=30.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC----CCChhhhhhhh
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND----SGGVKNASHLL 131 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd----~~~~~~~a~Ll 131 (409)
|||.|.| .|.+|+.+.+.|. +.++|+++.. +.+.+.+..++
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~----~~~~v~a~~~~~~Ditd~~~v~~~i 46 (281)
T COG1091 1 MKILITGANGQLGTELRRALP----GEFEVIATDRAELDITDPDAVLEVI 46 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC----CCceEEeccCccccccChHHHHHHH
Confidence 4699999 9999999999876 2368888753 34556565555
No 464
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=25.92 E-value=2.3e+02 Score=27.63 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=24.1
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
-+|.|+| .|.+|+.+++++.... .+|+++.+
T Consensus 164 ~~vlI~g~~g~ig~~~~~~a~~~G---~~v~~~~~ 195 (350)
T cd08248 164 KRVLILGGSGGVGTFAIQLLKAWG---AHVTTTCS 195 (350)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CeEEEEeC
Confidence 3689999 7999999998877654 57766654
No 465
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=25.83 E-value=2.9e+02 Score=30.16 Aligned_cols=102 Identities=24% Similarity=0.303 Sum_probs=58.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC---------CChhhhhhhhcccccccccCceEEEecCCeEEECCe
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGK 157 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~---------~~~~~~a~Ll~yDS~~G~f~~~v~~~~~~~l~v~gk 157 (409)
.|+.|=|||-+|.-..+.|.+.. =.+|+|.|. .+++.+. .+-..++++.+- ++....-.+
T Consensus 252 kr~~i~G~Gnv~~~aa~~l~~~G---~kvvavsD~~G~l~np~Gid~~eL~---~~~~~k~~i~~f----~~~~~~~~~- 320 (514)
T KOG2250|consen 252 KRVVIQGFGNVGGHAAKKLSEKG---AKVVAVSDSKGVLINPDGIDIEELL---DLADEKKTIKSF----DGAKLSYEG- 320 (514)
T ss_pred eEEEEeCCCchHHHHHHHHHhcC---CEEEEEEcCceeEECCCCCCHHHHH---HHHHhhcccccc----ccccccCcc-
Confidence 58999999999999988888654 367778774 2344333 222333332211 011111111
Q ss_pred EEEEEecCCCCCCCccccCccEEEeCC-CCCCChhhHHHHHHcCCCEEEE
Q 015291 158 LIKVVSNRDPLQLPWAELGIDIVIEGT-GVFVDGPGAGKHIQAGAKKVII 206 (409)
Q Consensus 158 ~I~v~~~~~p~~l~W~~~gvDiVle~T-G~f~s~e~a~~hl~aGakkVVI 206 (409)
... ..| -..|- ..+||.+=|+ ...++.+.|..-.+.|+| .|+
T Consensus 321 -~~~---~~~-~~~~v-~~~DI~vPCA~qn~I~~~nA~~lvak~~~-~Iv 363 (514)
T KOG2250|consen 321 -YIA---GLP-PWTLV-EKCDILVPCATQNEITGENAKALVAKGCK-YIV 363 (514)
T ss_pred -ccc---cCc-chhhH-hhCcEEeecCccCcccHhhHHHHHhcCCc-EEE
Confidence 111 111 11233 3689999887 567788899888888884 455
No 466
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.69 E-value=1e+02 Score=28.39 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=24.8
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+|-|.| .|.||+.+++.|.++. .+|+++..
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G---~~V~~~~r 37 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEG---ARVVVTDR 37 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCC---CEEEEEeC
Confidence 799999 9999999999998774 46766654
No 467
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=25.61 E-value=1.1e+02 Score=27.98 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=24.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
.++.|.| .|.||+.+++.|..+. .+|+.++.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g---~~V~l~~R 60 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREG---ARVVLVGR 60 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC---CEEEEEcC
Confidence 4799999 7999999999988653 36665654
No 468
>PLN00203 glutamyl-tRNA reductase
Probab=25.52 E-value=80 Score=34.36 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=25.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~ 121 (409)
.||+|+|.|.+|+.+++.|..+.. -+|+.+|..
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~--~~V~V~nRs 299 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGC--TKMVVVNRS 299 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCC--CeEEEEeCC
Confidence 579999999999999999987642 256667653
No 469
>PRK14852 hypothetical protein; Provisional
Probab=25.41 E-value=83 Score=36.97 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=20.4
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC
Q 015291 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 86 ~ikVaInGfGrIGr~vlr~l~~~~ 109 (409)
.-||+|+|.|-+|-.++..|....
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAraG 355 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLARTG 355 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHcC
Confidence 458999999999999999887543
No 470
>PRK05586 biotin carboxylase; Validated
Probab=25.38 E-value=88 Score=32.78 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=26.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
-||+|.|-|.+|+.+++++.+.. +++|++-
T Consensus 3 kkvli~g~G~~~~~~~~aa~~lG---~~~v~v~ 32 (447)
T PRK05586 3 KKILIANRGEIAVRIIRACREMG---IETVAVY 32 (447)
T ss_pred ceEEEECCcHHHHHHHHHHHHcC---CcEEEEc
Confidence 48999999999999999998764 7888884
No 471
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.30 E-value=74 Score=33.98 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=21.7
Q ss_pred cceeeEEEEcCChhHHHHHHHHHhC
Q 015291 84 VAKLKVAINGFGRIGRNFLRCWHGR 108 (409)
Q Consensus 84 ~m~ikVaInGfGrIGr~vlr~l~~~ 108 (409)
.|+.+|+|+|.|..|-..+|.|.++
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~ 28 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLRE 28 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHC
Confidence 3467899999999999999999865
No 472
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=25.22 E-value=98 Score=28.83 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=21.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+|+|.|||.-|+.....|.+.. ++|+.-..
T Consensus 6 ~IAViGyGsQG~a~AlNLrDSG---~~V~Vglr 35 (165)
T PF07991_consen 6 TIAVIGYGSQGHAHALNLRDSG---VNVIVGLR 35 (165)
T ss_dssp EEEEES-SHHHHHHHHHHHHCC----EEEEEE-
T ss_pred EEEEECCChHHHHHHHHHHhCC---CCEEEEec
Confidence 7999999999999888887653 67664443
No 473
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=24.51 E-value=63 Score=31.97 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.5
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRK 109 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~ 109 (409)
|||-|-| +|.||+.+++.|.++.
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g 24 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNT 24 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhC
Confidence 4899999 9999999999998763
No 474
>PRK07578 short chain dehydrogenase; Provisional
Probab=24.49 E-value=1.4e+02 Score=26.78 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=22.7
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
++-|.| .|.||+.+.+.|.++ .+|+.+.
T Consensus 2 ~vlItGas~giG~~la~~l~~~----~~vi~~~ 30 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSKR----HEVITAG 30 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHhc----CcEEEEe
Confidence 788999 899999999998865 3666554
No 475
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=24.49 E-value=1.1e+02 Score=28.02 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=23.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEE
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaI 118 (409)
|+|-|.| .|-||+.+++.|.++. ....++..
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~-~~~~v~~~ 32 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERY-PDATVHAT 32 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhC-CCCEEEEE
Confidence 3789999 9999999999998763 22454443
No 476
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=24.33 E-value=2.6e+02 Score=26.84 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=22.5
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
+|.|+| .|.+|..+++++.... ..|+++-
T Consensus 142 ~vlI~g~~g~ig~~~~~~a~~~g---~~v~~~~ 171 (331)
T cd08273 142 RVLIHGASGGVGQALLELALLAG---AEVYGTA 171 (331)
T ss_pred EEEEECCCcHHHHHHHHHHHHcC---CEEEEEe
Confidence 689999 6999999988876553 5666654
No 477
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=24.31 E-value=1e+02 Score=31.03 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=25.2
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+|||.|-|..|+.+.+++.++. ++++++..
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG---~~v~~~d~ 30 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLG---IKVHVLDP 30 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcC---CEEEEECC
Confidence 4899999999999999988764 78877754
No 478
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.21 E-value=1.1e+02 Score=27.93 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=23.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEE
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaI 118 (409)
.+|-|.| .|.||+.+++.+.++. .+++.+
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g---~~v~~~ 35 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEG---AKVVIA 35 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC---CEEEEE
Confidence 3799999 9999999999988653 577666
No 479
>PLN02650 dihydroflavonol-4-reductase
Probab=24.20 E-value=95 Score=30.86 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=24.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
.+|-|-| .|.||+.+++.|.++. .+|+++.
T Consensus 6 k~iLVTGatGfIGs~l~~~L~~~G---~~V~~~~ 36 (351)
T PLN02650 6 ETVCVTGASGFIGSWLVMRLLERG---YTVRATV 36 (351)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHCC---CEEEEEE
Confidence 4799999 9999999999998764 5776653
No 480
>PRK07577 short chain dehydrogenase; Provisional
Probab=24.17 E-value=1.1e+02 Score=27.87 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=23.9
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
+|-|.| +|.||+.+++.|.++. .+|+.+.
T Consensus 5 ~vlItG~s~~iG~~ia~~l~~~G---~~v~~~~ 34 (234)
T PRK07577 5 TVLVTGATKGIGLALSLRLANLG---HQVIGIA 34 (234)
T ss_pred EEEEECCCCcHHHHHHHHHHHCC---CEEEEEe
Confidence 689999 9999999999998764 5766654
No 481
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=24.10 E-value=1.2e+02 Score=27.84 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=22.6
Q ss_pred eeEEEEcCCh-hHHHHHHHHHhCCCCCceEEEEe
Q 015291 87 LKVAINGFGR-IGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 87 ikVaInGfGr-IGr~vlr~l~~~~~~~~~vVaIn 119 (409)
-||.|+|.|. +|+.+++.|.++. ..|..+|
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g---~~V~v~~ 75 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRN---ATVTVCH 75 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCC---CEEEEEE
Confidence 4899999997 5998999988764 3554444
No 482
>PRK07024 short chain dehydrogenase; Provisional
Probab=23.94 E-value=1.2e+02 Score=28.49 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=24.3
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 86 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
+.+|-|.| .|.||+.+.+.|.++. .+|+.+.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G---~~v~~~~ 33 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQG---ATLGLVA 33 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC---CEEEEEe
Confidence 35788999 9999999999998764 4666554
No 483
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.94 E-value=1.2e+02 Score=27.71 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=20.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCC
Q 015291 87 LKVAING-FGRIGRNFLRCWHGRK 109 (409)
Q Consensus 87 ikVaInG-fGrIGr~vlr~l~~~~ 109 (409)
.+|-|.| .|-||+.+++.|.++.
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g 30 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAG 30 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC
Confidence 4799999 9999999999998764
No 484
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=23.78 E-value=1e+02 Score=31.17 Aligned_cols=35 Identities=14% Similarity=0.296 Sum_probs=27.5
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 85 m~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|+.+|.|+|-|.-|-.+++.|.++ +++.+|+.|..
T Consensus 1 m~~~vvIiG~G~AG~~~a~~lr~~-~~~~~Itvi~~ 35 (377)
T PRK04965 1 MSNGIVIIGSGFAARQLVKNIRKQ-DAHIPITLITA 35 (377)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhh-CcCCCEEEEeC
Confidence 445899999999999999988765 35577777764
No 485
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=23.69 E-value=1.3e+02 Score=29.41 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=22.5
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
+|.|+|.|.+|+.+++++..+. ...++++.
T Consensus 169 ~vlI~g~g~~g~~~~~~a~~~G--~~~v~~~~ 198 (345)
T cd08286 169 TVAIVGAGPVGLAALLTAQLYS--PSKIIMVD 198 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcC--CCeEEEEc
Confidence 6889999999999988877653 24566653
No 486
>PRK08163 salicylate hydroxylase; Provisional
Probab=23.54 E-value=1.1e+02 Score=30.94 Aligned_cols=32 Identities=19% Similarity=0.079 Sum_probs=24.6
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 85 m~ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
|+++|.|+|-|..|-.+..+|.... ++|..+.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g---~~v~v~E 34 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQG---IKVKLLE 34 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCC---CcEEEEe
Confidence 4579999999999999888887543 5655554
No 487
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=23.42 E-value=1.1e+02 Score=29.73 Aligned_cols=29 Identities=24% Similarity=0.537 Sum_probs=22.5
Q ss_pred EEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 89 VaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
|-|.| +|-||+.+++.|.++. .+++++-+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g---~~~v~~~~ 31 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG---ITDILVVD 31 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC---CceEEEec
Confidence 57889 9999999999998763 45555544
No 488
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=23.28 E-value=94 Score=26.58 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=27.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~ 121 (409)
-||-|.|-|.|+.+++|.+.+.. ++.|+||..
T Consensus 3 kkvLIanrGeia~r~~ra~r~~G---i~tv~v~s~ 34 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELG---IETVAVNSN 34 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTT---SEEEEEEEG
T ss_pred CEEEEECCCHHHHHHHHHHHHhC---CcceeccCc
Confidence 37999999999999999999875 899999863
No 489
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=23.13 E-value=3.1e+02 Score=25.95 Aligned_cols=30 Identities=27% Similarity=0.268 Sum_probs=24.0
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+|.|+| .|.+|+.+++++.... .+++++..
T Consensus 146 ~vli~g~~g~~g~~~~~la~~~g---~~v~~~~~ 176 (319)
T cd08267 146 RVLINGASGGVGTFAVQIAKALG---AHVTGVCS 176 (319)
T ss_pred EEEEEcCCcHHHHHHHHHHHHcC---CEEEEEeC
Confidence 689999 6999999999887654 57777754
No 490
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.99 E-value=79 Score=33.76 Aligned_cols=66 Identities=15% Similarity=0.303 Sum_probs=45.1
Q ss_pred CCCCCh------hhHHHHHHcCCCEEEEeCCCCCCCCCeEEecCCccccCcCCCcEEecCCcchhhhHHHHHHHHhhcCc
Q 015291 185 GVFVDG------PGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGI 258 (409)
Q Consensus 185 G~f~s~------e~a~~hl~aGakkVVISaps~~~dvP~vV~gVN~~~~~~~~~~IISnaSCTTn~Lapvlk~L~~~fGI 258 (409)
|...|+ +.++...+.|+|-+++++ .|-..|..+... . ..-|+-+|+-|.+--||
T Consensus 168 G~~rSr~~e~Il~ev~~Lv~~G~kEI~L~g-------------qdv~aYG~D~~~-----~--~~~l~~Ll~~l~~I~G~ 227 (437)
T COG0621 168 GKERSRPPEDILKEVKRLVAQGVKEIVLTG-------------QDVNAYGKDLGG-----G--KPNLADLLRELSKIPGI 227 (437)
T ss_pred CCccCCCHHHHHHHHHHHHHCCCeEEEEEE-------------EehhhccccCCC-----C--ccCHHHHHHHHhcCCCc
Confidence 666665 356677789998877764 233344332111 1 34588999999997789
Q ss_pred cEEEeeeeeccc
Q 015291 259 VKGAMTTTHSYT 270 (409)
Q Consensus 259 ~~~~mTTiha~T 270 (409)
.++.++++|+.-
T Consensus 228 ~riR~~~~~P~~ 239 (437)
T COG0621 228 ERIRFGSSHPLE 239 (437)
T ss_pred eEEEEecCCchh
Confidence 999999999953
No 491
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=22.69 E-value=1.1e+02 Score=30.48 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=23.2
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCce-EEEEeC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVND 120 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~-vVaInd 120 (409)
+|.|+|.|.+|+.+++++.... .. |+++..
T Consensus 185 ~vLI~g~g~vG~a~i~lak~~G---~~~Vi~~~~ 215 (363)
T cd08279 185 TVAVIGCGGVGLNAIQGARIAG---ASRIIAVDP 215 (363)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCcEEEEcC
Confidence 7899999999999998887653 44 666543
No 492
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=22.47 E-value=1.6e+02 Score=28.12 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=23.6
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+|.|+| .|.||+.+++++..+. .+++++.+
T Consensus 141 ~vlI~g~~~~vg~~~~~~a~~~g---~~v~~~~~ 171 (323)
T cd05282 141 WVIQNAANSAVGRMLIQLAKLLG---FKTINVVR 171 (323)
T ss_pred EEEEcccccHHHHHHHHHHHHCC---CeEEEEec
Confidence 689999 6999999999888764 56666654
No 493
>PF01232 Mannitol_dh: Mannitol dehydrogenase Rossmann domain; InterPro: IPR013131 Mannitol-1-phosphate 5-dehydrogenase catalyses the NAD-dependent reduction of mannitol-1-phosphate to fructose-6-phosphate [] as part of the phosphoenolpyruvate-dependent phosphotransferase system (PTS). The PTS facilitates the vectorial translocation of metabolisable carbohydrates to form the corresponding sugar phosphates, which are then converted to glycolytic intermediates []. Mannitol 2-dehydrogenase catalyses the NAD-dependent reduction of mannitol to fructose []. Several dehydrogenases have been shown [] to be evolutionary related, including mannitol-1-phosphate 5-dehydrogenase (1.1.1.17 from EC) (gene mtlD), mannitol 2-dehydrogenase (1.1.1.67 from EC) (gene mtlK); mannonate oxidoreductase (1.1.1.57 from EC) (fructuronate reductase) (gene uxuB); Escherichia coli hypothetical proteins ydfI and yeiQ; and yeast hypothetical protein YEL070w. This domain has a Rossmann-type fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1M2W_A 1LJ8_A 3H2Z_A.
Probab=22.28 E-value=1.1e+02 Score=27.40 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=25.6
Q ss_pred eeEEEEcCChhHHH---HHHHHHhCCCCCceEEEEeCC
Q 015291 87 LKVAINGFGRIGRN---FLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 87 ikVaInGfGrIGr~---vlr~l~~~~~~~~~vVaInd~ 121 (409)
|||--.|.|+++|. ++.-|.++...+.-++.||..
T Consensus 1 m~ivhfG~Gnf~Rgh~a~i~~ll~~~~~~~gi~~V~~~ 38 (151)
T PF01232_consen 1 MKIVHFGAGNFHRGHQAFIDELLNQGGFDWGIVDVNPR 38 (151)
T ss_dssp -EEEEES-SHHHHHTHHCHHHHHCCTTTCEEEEECEHC
T ss_pred CcEEEECCcHHHHHHHHHHHHHHhccCCceEEEEEEec
Confidence 58899999999999 776666554456888888864
No 494
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=22.26 E-value=1.1e+02 Score=30.74 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=25.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
||+|.|-|..|+.+++++.++. ++++++..
T Consensus 1 kililG~g~~~~~l~~aa~~~G---~~v~~~d~ 30 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLG---VEVIAVDR 30 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcC---CEEEEEeC
Confidence 7999999999999999988764 68777754
No 495
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=22.24 E-value=1.1e+02 Score=28.75 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRK 109 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~ 109 (409)
-||.|.|.|.+|..+++.|....
T Consensus 22 ~~VlviG~GglGs~ia~~La~~G 44 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAG 44 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcC
Confidence 47999999999999999998764
No 496
>PRK08618 ornithine cyclodeaminase; Validated
Probab=22.23 E-value=1.2e+02 Score=30.66 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=24.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 015291 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (409)
Q Consensus 87 ikVaInGfGrIGr~vlr~l~~~~~~~~~vVaInd~ 121 (409)
-+|+|.|.|.+||..++++.... .++-|.|-+.
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~--~~~~v~v~~r 160 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVR--DIERVRVYSR 160 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcC--CccEEEEECC
Confidence 47999999999999998876432 2555555554
No 497
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=22.16 E-value=1.8e+02 Score=28.32 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=21.7
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 015291 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (409)
Q Consensus 88 kVaInGfGrIGr~vlr~l~~~~~~~~~vVaI 118 (409)
+|.|.|.|.+|..+++++..+.. -.++++
T Consensus 170 ~VlI~g~g~vg~~~iqlak~~g~--~~v~~~ 198 (347)
T cd05278 170 TVAVIGAGPVGLCAVAGARLLGA--ARIIAV 198 (347)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC--CEEEEE
Confidence 68888999999999988776531 155666
No 498
>PRK07074 short chain dehydrogenase; Provisional
Probab=22.15 E-value=1.3e+02 Score=28.05 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=23.5
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaIn 119 (409)
++-|.| .|.||+.+.+.|.++. .+|+.+.
T Consensus 4 ~ilItGat~~iG~~la~~L~~~g---~~v~~~~ 33 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFLAAG---DRVLALD 33 (257)
T ss_pred EEEEECCcchHHHHHHHHHHHCC---CEEEEEe
Confidence 688999 8999999999998764 4666654
No 499
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.14 E-value=3.1e+02 Score=19.72 Aligned_cols=58 Identities=16% Similarity=0.214 Sum_probs=32.7
Q ss_pred ecCCCchHHHHHHHccccCCCeeEEEEecCc----cceeEEEEEEEEccCCCCHHHHHHHHHH
Q 015291 294 VPTSTGAAKAVSLVMPQLKGKLNGIALRVPT----PNVSVVDLVVNVEKKGITAEDVNAAFRK 352 (409)
Q Consensus 294 IP~~tGaakav~kVlPeL~gkl~g~avRVPv----~~gs~vdltv~lek~~vs~eeI~~al~~ 352 (409)
+|...|.-..+..++-+.+..|.....+.+- .....+.+++++... -..+++.+.|++
T Consensus 5 ~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~-~~l~~l~~~l~~ 66 (73)
T cd04886 5 LPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGA-EHIEEIIAALRE 66 (73)
T ss_pred eCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCH-HHHHHHHHHHHH
Confidence 4556676667778888887788766655331 233445555555332 233455555543
No 500
>PRK12828 short chain dehydrogenase; Provisional
Probab=22.12 E-value=1.3e+02 Score=27.28 Aligned_cols=30 Identities=33% Similarity=0.514 Sum_probs=24.3
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 015291 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (409)
Q Consensus 88 kVaInG-fGrIGr~vlr~l~~~~~~~~~vVaInd 120 (409)
+|-|.| +|.||+.+++.|.++. .+|+.+..
T Consensus 9 ~vlItGatg~iG~~la~~l~~~G---~~v~~~~r 39 (239)
T PRK12828 9 VVAITGGFGGLGRATAAWLAARG---ARVALIGR 39 (239)
T ss_pred EEEEECCCCcHhHHHHHHHHHCC---CeEEEEeC
Confidence 699999 9999999999998764 46666653
Done!