Query 015292
Match_columns 409
No_of_seqs 366 out of 2983
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 04:56:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015292.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015292hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0117 Heterogeneous nuclear 100.0 6.2E-52 1.3E-56 362.7 30.7 257 97-361 79-337 (506)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.1E-47 2.5E-52 358.0 31.9 255 101-357 3-351 (352)
3 TIGR01648 hnRNP-R-Q heterogene 100.0 9.7E-46 2.1E-50 350.9 32.6 251 98-357 55-309 (578)
4 KOG0145 RNA-binding protein EL 100.0 4.2E-44 9.1E-49 292.2 23.3 254 100-355 40-358 (360)
5 TIGR01628 PABP-1234 polyadenyl 100.0 1.7E-42 3.6E-47 341.3 33.7 252 102-357 1-366 (562)
6 KOG0148 Apoptosis-promoting RN 100.0 4E-40 8.7E-45 270.7 21.5 226 100-359 5-242 (321)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.6E-38 3.4E-43 305.0 32.1 240 101-357 2-353 (481)
8 KOG0127 Nucleolar protein fibr 100.0 4.1E-38 8.9E-43 282.3 23.0 250 101-355 5-378 (678)
9 TIGR01622 SF-CC1 splicing fact 100.0 5.9E-37 1.3E-41 295.4 30.1 250 98-356 86-449 (457)
10 TIGR01659 sex-lethal sex-letha 100.0 2.8E-36 6E-41 273.3 25.8 174 98-359 104-279 (346)
11 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.3E-35 2.7E-40 290.2 28.1 245 100-355 174-502 (509)
12 KOG0144 RNA-binding protein CU 100.0 1.4E-36 2.9E-41 265.3 18.4 255 100-357 33-506 (510)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.5E-35 7.5E-40 282.0 29.2 240 101-355 96-480 (481)
14 TIGR01645 half-pint poly-U bin 100.0 8.7E-35 1.9E-39 276.5 29.1 148 99-248 105-269 (612)
15 KOG0123 Polyadenylate-binding 100.0 1.2E-31 2.7E-36 244.1 20.5 250 101-359 76-353 (369)
16 KOG0123 Polyadenylate-binding 100.0 1.1E-30 2.4E-35 237.9 22.3 240 102-355 2-246 (369)
17 KOG0127 Nucleolar protein fibr 100.0 2.3E-29 4.9E-34 226.3 15.8 234 101-337 117-516 (678)
18 KOG0124 Polypyrimidine tract-b 100.0 1.9E-28 4.1E-33 210.0 18.8 249 101-353 113-533 (544)
19 TIGR01645 half-pint poly-U bin 100.0 4.1E-28 8.9E-33 231.1 20.9 173 181-357 107-286 (612)
20 KOG0110 RNA-binding protein (R 100.0 2.3E-28 4.9E-33 227.0 17.9 249 100-357 384-695 (725)
21 KOG0131 Splicing factor 3b, su 99.9 3.3E-27 7.1E-32 183.6 13.2 173 100-359 8-181 (203)
22 KOG0147 Transcriptional coacti 99.9 1.7E-27 3.8E-32 215.4 12.8 247 99-355 177-528 (549)
23 KOG4212 RNA-binding protein hn 99.9 1E-25 2.2E-30 197.5 23.0 143 101-247 44-278 (608)
24 KOG0144 RNA-binding protein CU 99.9 1.2E-26 2.6E-31 203.3 16.4 172 182-359 35-210 (510)
25 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 6.9E-26 1.5E-30 211.4 22.2 169 180-356 2-172 (352)
26 TIGR01622 SF-CC1 splicing fact 99.9 3E-25 6.5E-30 214.1 21.2 170 180-354 88-265 (457)
27 KOG0148 Apoptosis-promoting RN 99.9 7.5E-26 1.6E-30 186.7 13.1 152 103-264 64-237 (321)
28 KOG0145 RNA-binding protein EL 99.9 8.7E-26 1.9E-30 185.2 13.4 171 179-357 39-211 (360)
29 KOG4211 Splicing factor hnRNP- 99.9 5.5E-24 1.2E-28 190.3 22.6 246 98-353 7-356 (510)
30 KOG0109 RNA-binding protein LA 99.9 2.5E-25 5.5E-30 185.5 12.9 150 102-357 3-152 (346)
31 KOG0146 RNA-binding protein ET 99.9 3.6E-25 7.9E-30 182.2 12.8 264 95-359 13-369 (371)
32 TIGR01628 PABP-1234 polyadenyl 99.9 2.5E-24 5.3E-29 212.5 18.4 169 183-358 2-170 (562)
33 TIGR01648 hnRNP-R-Q heterogene 99.9 1.1E-23 2.3E-28 200.9 20.5 190 153-356 19-223 (578)
34 KOG4205 RNA-binding protein mu 99.9 5.4E-24 1.2E-28 186.9 14.9 178 100-361 5-182 (311)
35 KOG0117 Heterogeneous nuclear 99.9 8.6E-23 1.9E-27 180.1 17.5 163 182-357 84-250 (506)
36 TIGR01642 U2AF_lg U2 snRNP aux 99.9 9.9E-23 2.1E-27 199.4 19.0 167 180-356 174-376 (509)
37 KOG0110 RNA-binding protein (R 99.9 2.3E-22 5.1E-27 187.3 15.0 222 99-353 225-596 (725)
38 KOG1190 Polypyrimidine tract-b 99.9 3.8E-21 8.2E-26 167.8 17.5 244 99-360 26-378 (492)
39 KOG4206 Spliceosomal protein s 99.9 8.6E-20 1.9E-24 148.5 18.6 206 102-353 10-220 (221)
40 KOG0124 Polypyrimidine tract-b 99.8 7.2E-21 1.6E-25 163.7 11.0 169 182-354 114-289 (544)
41 PLN03134 glycine-rich RNA-bind 99.8 5.2E-20 1.1E-24 146.3 14.7 85 273-357 32-116 (144)
42 KOG0105 Alternative splicing f 99.8 4.9E-18 1.1E-22 132.7 19.4 173 99-343 4-176 (241)
43 KOG1548 Transcription elongati 99.8 9.6E-18 2.1E-22 143.9 19.8 205 98-357 131-354 (382)
44 KOG0147 Transcriptional coacti 99.8 1.9E-19 4.1E-24 163.6 8.3 171 182-357 180-360 (549)
45 KOG0120 Splicing factor U2AF, 99.8 3.8E-18 8.2E-23 157.4 16.0 244 100-354 174-491 (500)
46 PLN03134 glycine-rich RNA-bind 99.8 7.5E-18 1.6E-22 133.9 11.1 82 100-181 33-114 (144)
47 KOG1456 Heterogeneous nuclear 99.7 2.8E-16 6E-21 136.1 19.8 245 96-358 26-366 (494)
48 KOG1365 RNA-binding protein Fu 99.7 1.1E-16 2.4E-21 138.9 16.8 253 99-356 58-363 (508)
49 KOG1190 Polypyrimidine tract-b 99.7 5.1E-16 1.1E-20 136.1 19.5 234 103-354 152-490 (492)
50 KOG1457 RNA binding protein (c 99.7 5.2E-16 1.1E-20 125.2 14.9 230 98-343 31-274 (284)
51 KOG4211 Splicing factor hnRNP- 99.7 8.8E-16 1.9E-20 138.2 15.8 163 182-355 11-182 (510)
52 KOG0149 Predicted RNA-binding 99.7 5E-16 1.1E-20 126.9 11.2 81 275-356 12-92 (247)
53 KOG4207 Predicted splicing fac 99.7 3.5E-16 7.6E-21 124.7 9.8 84 274-357 12-95 (256)
54 PF00076 RRM_1: RNA recognitio 99.7 3.6E-16 7.9E-21 109.4 8.2 70 278-348 1-70 (70)
55 PF00076 RRM_1: RNA recognitio 99.7 6.3E-16 1.4E-20 108.2 9.1 70 104-174 1-70 (70)
56 KOG0122 Translation initiation 99.7 3.4E-16 7.4E-21 128.2 8.6 82 274-355 188-269 (270)
57 TIGR01659 sex-lethal sex-letha 99.6 9.3E-16 2E-20 139.7 10.3 83 273-355 105-187 (346)
58 KOG0106 Alternative splicing f 99.6 6.7E-16 1.4E-20 127.5 8.4 171 102-356 2-172 (216)
59 KOG0125 Ataxin 2-binding prote 99.6 9.6E-16 2.1E-20 130.8 9.2 87 269-357 90-176 (376)
60 KOG0149 Predicted RNA-binding 99.6 7.2E-16 1.6E-20 126.0 7.5 78 101-179 12-89 (247)
61 KOG0122 Translation initiation 99.6 1.5E-15 3.2E-20 124.5 9.3 82 100-181 188-269 (270)
62 KOG0121 Nuclear cap-binding pr 99.6 1.3E-15 2.9E-20 111.8 8.0 82 275-356 36-117 (153)
63 PF14259 RRM_6: RNA recognitio 99.6 3.5E-15 7.5E-20 104.3 9.2 70 104-174 1-70 (70)
64 PF14259 RRM_6: RNA recognitio 99.6 2.6E-15 5.5E-20 104.9 8.4 70 278-348 1-70 (70)
65 KOG0114 Predicted RNA-binding 99.6 8.2E-15 1.8E-19 103.5 9.9 81 274-357 17-97 (124)
66 PLN03120 nucleic acid binding 99.6 4.8E-15 1E-19 125.8 10.2 76 276-355 5-80 (260)
67 COG0724 RNA-binding proteins ( 99.6 1.8E-14 3.8E-19 130.7 13.8 169 101-335 115-285 (306)
68 KOG0107 Alternative splicing f 99.6 1.3E-14 2.7E-19 113.0 10.4 77 276-357 11-87 (195)
69 KOG0105 Alternative splicing f 99.6 1.2E-14 2.7E-19 113.8 10.0 80 274-356 5-84 (241)
70 KOG0121 Nuclear cap-binding pr 99.6 4.2E-15 9.2E-20 109.2 6.9 82 98-179 33-114 (153)
71 KOG0113 U1 small nuclear ribon 99.6 4.1E-14 8.9E-19 119.4 13.3 95 264-358 90-184 (335)
72 KOG1456 Heterogeneous nuclear 99.6 1.4E-13 3E-18 119.6 16.7 163 182-357 32-201 (494)
73 PLN03120 nucleic acid binding 99.6 1.4E-14 3.1E-19 123.0 10.4 76 101-180 4-79 (260)
74 KOG0126 Predicted RNA-binding 99.5 6.5E-16 1.4E-20 120.7 0.1 80 100-179 34-113 (219)
75 KOG0114 Predicted RNA-binding 99.5 3.6E-14 7.7E-19 100.3 8.8 81 98-181 15-95 (124)
76 KOG0126 Predicted RNA-binding 99.5 1.3E-15 2.8E-20 119.0 1.5 105 240-352 8-112 (219)
77 PLN03213 repressor of silencin 99.5 2.9E-14 6.3E-19 128.0 9.4 77 275-355 10-88 (759)
78 PLN03121 nucleic acid binding 99.5 5.3E-14 1.1E-18 117.4 10.3 78 99-180 3-80 (243)
79 PLN03213 repressor of silencin 99.5 3.9E-14 8.5E-19 127.2 9.4 77 101-181 10-88 (759)
80 KOG0125 Ataxin 2-binding prote 99.5 3E-14 6.4E-19 121.8 8.0 82 98-181 93-174 (376)
81 KOG0107 Alternative splicing f 99.5 3.6E-14 7.8E-19 110.5 7.7 75 101-180 10-84 (195)
82 KOG0111 Cyclophilin-type pepti 99.5 1.3E-14 2.8E-19 116.8 5.2 84 275-358 10-93 (298)
83 KOG0113 U1 small nuclear ribon 99.5 5.9E-14 1.3E-18 118.5 9.0 80 100-179 100-179 (335)
84 PLN03121 nucleic acid binding 99.5 1.2E-13 2.5E-18 115.3 10.3 77 275-355 5-81 (243)
85 KOG4207 Predicted splicing fac 99.5 3.8E-14 8.3E-19 113.2 6.2 80 100-179 12-91 (256)
86 smart00362 RRM_2 RNA recogniti 99.5 2.3E-13 4.9E-18 95.5 9.4 72 277-350 1-72 (72)
87 KOG0130 RNA-binding protein RB 99.5 1.5E-13 3.2E-18 102.1 7.9 86 272-357 69-154 (170)
88 smart00362 RRM_2 RNA recogniti 99.5 3.5E-13 7.5E-18 94.5 9.6 72 103-176 1-72 (72)
89 smart00360 RRM RNA recognition 99.5 4E-13 8.8E-18 93.8 8.4 71 280-350 1-71 (71)
90 KOG0111 Cyclophilin-type pepti 99.4 1.1E-13 2.5E-18 111.4 5.6 84 99-182 8-91 (298)
91 KOG4212 RNA-binding protein hn 99.4 2.7E-12 5.8E-17 113.9 14.5 168 181-353 44-292 (608)
92 PF13893 RRM_5: RNA recognitio 99.4 7.3E-13 1.6E-17 87.7 8.3 56 292-352 1-56 (56)
93 smart00360 RRM RNA recognition 99.4 8.6E-13 1.9E-17 92.1 8.9 71 106-176 1-71 (71)
94 KOG0130 RNA-binding protein RB 99.4 3.6E-13 7.7E-18 100.0 6.5 80 100-179 71-150 (170)
95 cd00590 RRM RRM (RNA recogniti 99.4 1.9E-12 4.1E-17 91.2 9.7 74 277-351 1-74 (74)
96 KOG0108 mRNA cleavage and poly 99.4 8.9E-13 1.9E-17 121.7 8.9 82 276-357 19-100 (435)
97 KOG0128 RNA-binding protein SA 99.4 9.8E-14 2.1E-18 132.8 1.8 235 98-359 568-819 (881)
98 cd00590 RRM RRM (RNA recogniti 99.4 4.9E-12 1.1E-16 89.1 10.1 74 103-177 1-74 (74)
99 KOG0108 mRNA cleavage and poly 99.4 1.3E-12 2.9E-17 120.5 8.6 80 102-181 19-98 (435)
100 smart00361 RRM_1 RNA recogniti 99.4 2.3E-12 4.9E-17 89.4 7.7 62 289-350 2-70 (70)
101 KOG0131 Splicing factor 3b, su 99.4 1E-12 2.2E-17 103.2 6.1 79 275-353 9-87 (203)
102 KOG0116 RasGAP SH3 binding pro 99.4 5.6E-12 1.2E-16 115.7 11.5 83 276-359 289-371 (419)
103 COG0724 RNA-binding proteins ( 99.3 5.4E-12 1.2E-16 114.3 10.1 80 275-354 115-194 (306)
104 smart00361 RRM_1 RNA recogniti 99.3 1.2E-11 2.6E-16 85.8 8.3 61 115-175 2-69 (70)
105 KOG4660 Protein Mei2, essentia 99.3 1.9E-11 4.1E-16 112.3 10.2 73 98-175 72-144 (549)
106 PF13893 RRM_5: RNA recognitio 99.3 1.9E-11 4.1E-16 80.8 7.6 56 118-178 1-56 (56)
107 KOG0146 RNA-binding protein ET 99.3 5.5E-12 1.2E-16 104.9 5.3 84 98-181 282-365 (371)
108 KOG0109 RNA-binding protein LA 99.3 1.2E-11 2.7E-16 104.2 7.2 73 276-356 3-75 (346)
109 KOG4210 Nuclear localization s 99.2 1.8E-11 4E-16 108.1 7.9 180 100-357 87-266 (285)
110 KOG4206 Spliceosomal protein s 99.2 3.8E-11 8.3E-16 98.4 7.9 80 276-358 10-93 (221)
111 KOG0415 Predicted peptidyl pro 99.2 9.7E-12 2.1E-16 107.5 4.6 83 98-180 236-318 (479)
112 KOG4307 RNA binding protein RB 99.2 2.2E-10 4.9E-15 107.5 13.3 166 184-353 314-512 (944)
113 KOG0129 Predicted RNA-binding 99.2 3.1E-10 6.7E-15 103.6 13.5 171 98-336 256-432 (520)
114 KOG4208 Nucleolar RNA-binding 99.2 9.9E-11 2.1E-15 94.3 7.6 80 276-355 50-130 (214)
115 KOG0415 Predicted peptidyl pro 99.2 5.6E-11 1.2E-15 102.9 6.4 85 273-357 237-321 (479)
116 KOG4307 RNA binding protein RB 99.1 4.2E-10 9E-15 105.7 12.1 75 276-351 868-943 (944)
117 KOG0120 Splicing factor U2AF, 99.1 3.2E-10 6.9E-15 105.5 11.2 161 98-261 286-488 (500)
118 KOG4454 RNA binding protein (R 99.1 1.3E-11 2.8E-16 99.8 1.6 142 97-342 5-150 (267)
119 KOG1365 RNA-binding protein Fu 99.1 9.7E-11 2.1E-15 102.4 6.3 143 102-248 162-347 (508)
120 KOG0112 Large RNA-binding prot 99.1 1.1E-10 2.4E-15 112.8 6.9 166 96-358 367-534 (975)
121 KOG4208 Nucleolar RNA-binding 99.1 2.6E-10 5.7E-15 91.9 7.7 82 100-181 48-130 (214)
122 KOG0153 Predicted RNA-binding 99.1 6E-10 1.3E-14 96.6 9.2 77 272-354 225-302 (377)
123 KOG4661 Hsp27-ERE-TATA-binding 99.1 3.1E-10 6.6E-15 104.2 7.7 81 99-179 403-483 (940)
124 KOG0132 RNA polymerase II C-te 99.1 4.8E-10 1E-14 106.8 8.4 77 275-357 421-497 (894)
125 KOG4661 Hsp27-ERE-TATA-binding 99.0 4.1E-10 8.9E-15 103.4 7.1 82 273-354 403-484 (940)
126 KOG1457 RNA binding protein (c 99.0 3.2E-09 6.9E-14 86.4 10.3 87 275-361 34-124 (284)
127 KOG0132 RNA polymerase II C-te 99.0 8.9E-10 1.9E-14 105.0 8.0 75 100-180 420-494 (894)
128 KOG4205 RNA-binding protein mu 99.0 1.8E-09 3.9E-14 95.7 8.3 81 101-182 97-177 (311)
129 KOG0153 Predicted RNA-binding 98.9 3.3E-09 7.2E-14 92.1 7.9 76 99-180 226-302 (377)
130 KOG0533 RRM motif-containing p 98.9 2.5E-08 5.4E-13 84.9 12.6 83 275-358 83-165 (243)
131 KOG0226 RNA-binding proteins [ 98.9 3.2E-09 6.9E-14 88.2 5.8 133 220-356 135-271 (290)
132 KOG0128 RNA-binding protein SA 98.9 3E-10 6.5E-15 109.4 -0.6 135 100-248 666-800 (881)
133 PF04059 RRM_2: RNA recognitio 98.8 3.8E-08 8.2E-13 71.4 8.8 81 276-356 2-88 (97)
134 KOG0106 Alternative splicing f 98.8 1.1E-08 2.4E-13 85.0 6.0 74 276-357 2-75 (216)
135 KOG0533 RRM motif-containing p 98.8 3.3E-08 7.1E-13 84.2 8.9 80 100-180 82-161 (243)
136 KOG4660 Protein Mei2, essentia 98.7 1.4E-08 3E-13 93.8 6.1 72 272-348 72-143 (549)
137 KOG1548 Transcription elongati 98.7 3.3E-08 7.2E-13 85.9 7.6 82 275-357 134-223 (382)
138 KOG4676 Splicing factor, argin 98.7 3.2E-09 6.9E-14 93.4 1.0 212 102-355 8-226 (479)
139 KOG4209 Splicing factor RNPS1, 98.7 6.7E-08 1.5E-12 82.7 9.1 81 274-355 100-180 (231)
140 KOG0116 RasGAP SH3 binding pro 98.7 3.7E-08 8.1E-13 90.8 6.9 78 101-179 288-365 (419)
141 PF04059 RRM_2: RNA recognitio 98.7 2.4E-07 5.2E-12 67.3 9.6 78 102-179 2-85 (97)
142 PF11608 Limkain-b1: Limkain b 98.6 1.3E-07 2.8E-12 65.0 6.9 69 102-180 3-76 (90)
143 KOG4209 Splicing factor RNPS1, 98.6 4.4E-08 9.6E-13 83.8 5.8 80 99-179 99-178 (231)
144 KOG3152 TBP-binding protein, a 98.6 2.4E-08 5.2E-13 83.2 3.7 73 100-172 73-157 (278)
145 PF11608 Limkain-b1: Limkain b 98.6 3E-07 6.6E-12 63.2 8.0 72 276-357 3-79 (90)
146 KOG0151 Predicted splicing reg 98.6 1.4E-07 3.1E-12 89.4 8.5 86 272-357 171-259 (877)
147 KOG2193 IGF-II mRNA-binding pr 98.6 1.6E-08 3.5E-13 89.9 0.6 160 182-359 2-161 (584)
148 KOG0226 RNA-binding proteins [ 98.5 8.5E-08 1.8E-12 79.9 4.5 81 98-178 187-267 (290)
149 KOG4454 RNA binding protein (R 98.5 6.3E-08 1.4E-12 78.8 2.8 79 274-354 8-86 (267)
150 KOG0151 Predicted splicing reg 98.5 3.2E-07 7E-12 87.0 7.5 82 98-179 171-255 (877)
151 KOG1995 Conserved Zn-finger pr 98.4 8.1E-07 1.8E-11 78.2 8.4 85 273-357 64-156 (351)
152 PF08777 RRM_3: RNA binding mo 98.4 9.9E-07 2.1E-11 65.8 5.8 71 276-352 2-77 (105)
153 KOG1995 Conserved Zn-finger pr 98.2 1.4E-06 3.1E-11 76.7 4.6 84 99-182 64-155 (351)
154 PF08777 RRM_3: RNA binding mo 98.2 5.5E-06 1.2E-10 61.8 6.0 69 102-176 2-75 (105)
155 KOG4849 mRNA cleavage factor I 98.1 1.5E-05 3.2E-10 69.7 8.1 78 276-353 81-161 (498)
156 COG5175 MOT2 Transcriptional r 98.0 1.3E-05 2.9E-10 69.6 6.6 90 100-189 113-212 (480)
157 COG5175 MOT2 Transcriptional r 98.0 1.6E-05 3.5E-10 69.2 6.9 79 276-354 115-202 (480)
158 KOG2193 IGF-II mRNA-binding pr 98.0 2.6E-06 5.5E-11 76.2 1.1 138 102-250 2-144 (584)
159 KOG1855 Predicted RNA-binding 97.9 5.2E-05 1.1E-09 68.4 7.4 83 257-339 213-308 (484)
160 KOG2314 Translation initiation 97.8 7.2E-05 1.6E-09 69.7 8.4 76 276-352 59-141 (698)
161 KOG4210 Nuclear localization s 97.8 1.2E-05 2.7E-10 71.3 2.9 79 102-181 185-264 (285)
162 KOG3152 TBP-binding protein, a 97.8 1.7E-05 3.7E-10 66.5 2.9 71 276-346 75-157 (278)
163 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00012 2.5E-09 47.1 5.5 52 276-334 2-53 (53)
164 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00011 2.3E-09 47.3 5.3 52 102-160 2-53 (53)
165 KOG2416 Acinus (induces apopto 97.6 0.0002 4.3E-09 67.3 7.8 82 270-357 439-524 (718)
166 KOG0115 RNA-binding protein p5 97.6 0.00065 1.4E-08 57.4 9.7 77 276-353 32-112 (275)
167 KOG4849 mRNA cleavage factor I 97.6 5.8E-05 1.3E-09 66.1 3.7 78 102-179 81-160 (498)
168 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00058 1.3E-08 50.1 7.7 77 276-354 7-91 (100)
169 KOG2314 Translation initiation 97.5 0.00042 9E-09 64.8 7.5 77 99-176 56-139 (698)
170 KOG2202 U2 snRNP splicing fact 97.4 0.0001 2.3E-09 62.2 2.3 64 290-354 83-147 (260)
171 KOG1855 Predicted RNA-binding 97.3 0.00022 4.9E-09 64.4 4.0 68 100-167 230-310 (484)
172 PF08952 DUF1866: Domain of un 97.3 0.0011 2.5E-08 51.6 7.2 73 99-180 25-106 (146)
173 KOG1996 mRNA splicing factor [ 97.3 0.00073 1.6E-08 58.0 6.5 65 289-353 300-365 (378)
174 KOG0129 Predicted RNA-binding 97.3 0.0012 2.5E-08 61.5 8.2 64 99-162 368-432 (520)
175 PF08952 DUF1866: Domain of un 97.3 0.0016 3.5E-08 50.7 7.6 57 290-355 51-107 (146)
176 KOG4676 Splicing factor, argin 97.2 0.00071 1.5E-08 60.5 5.9 77 276-353 8-87 (479)
177 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0017 3.7E-08 47.7 6.6 77 101-179 6-90 (100)
178 KOG2416 Acinus (induces apopto 97.1 0.00086 1.9E-08 63.2 5.7 77 99-181 442-522 (718)
179 KOG2202 U2 snRNP splicing fact 97.0 0.00033 7.2E-09 59.2 2.1 63 116-179 83-146 (260)
180 KOG1996 mRNA splicing factor [ 96.8 0.004 8.7E-08 53.6 6.6 63 115-177 300-363 (378)
181 PF08675 RNA_bind: RNA binding 96.7 0.0087 1.9E-07 41.6 6.7 54 276-338 10-63 (87)
182 PF08675 RNA_bind: RNA binding 96.5 0.012 2.7E-07 40.9 6.3 56 101-165 9-64 (87)
183 PF03467 Smg4_UPF3: Smg-4/UPF3 96.4 0.0077 1.7E-07 49.7 6.0 81 276-356 8-99 (176)
184 PF10309 DUF2414: Protein of u 96.4 0.023 4.9E-07 37.5 6.6 53 276-337 6-62 (62)
185 PF15023 DUF4523: Protein of u 96.3 0.022 4.9E-07 43.8 7.3 72 274-353 85-160 (166)
186 PF04847 Calcipressin: Calcipr 96.1 0.018 3.9E-07 47.6 6.6 63 288-356 8-72 (184)
187 PF03467 Smg4_UPF3: Smg-4/UPF3 96.1 0.0059 1.3E-07 50.4 3.4 73 100-172 6-84 (176)
188 PF15023 DUF4523: Protein of u 96.0 0.042 9E-07 42.4 7.3 73 99-179 84-160 (166)
189 KOG0112 Large RNA-binding prot 95.9 0.0028 6E-08 62.9 1.0 79 274-353 371-449 (975)
190 KOG0115 RNA-binding protein p5 95.8 0.012 2.6E-07 49.9 4.1 76 102-178 32-111 (275)
191 KOG2068 MOT2 transcription fac 95.7 0.0029 6.3E-08 56.0 0.1 82 100-181 76-163 (327)
192 KOG2318 Uncharacterized conser 95.7 0.057 1.2E-06 51.3 8.3 78 99-176 172-303 (650)
193 PF10309 DUF2414: Protein of u 95.7 0.077 1.7E-06 35.0 6.6 54 102-163 6-62 (62)
194 PF11767 SET_assoc: Histone ly 95.5 0.063 1.4E-06 36.0 5.9 55 286-349 11-65 (66)
195 KOG4574 RNA-binding protein (c 95.4 0.035 7.7E-07 55.0 6.1 78 278-361 301-380 (1007)
196 KOG2068 MOT2 transcription fac 95.4 0.0063 1.4E-07 53.9 1.0 80 276-355 78-163 (327)
197 PF07576 BRAP2: BRCA1-associat 95.3 0.2 4.4E-06 37.6 8.8 67 276-344 14-81 (110)
198 KOG2135 Proteins containing th 94.9 0.021 4.5E-07 52.8 2.8 75 275-356 372-447 (526)
199 KOG0804 Cytoplasmic Zn-finger 94.7 0.14 3E-06 47.3 7.5 68 275-344 74-142 (493)
200 PF07576 BRAP2: BRCA1-associat 94.7 0.35 7.7E-06 36.3 8.5 68 101-170 12-81 (110)
201 KOG2253 U1 snRNP complex, subu 94.6 0.04 8.6E-07 53.3 4.1 74 270-352 35-108 (668)
202 KOG4285 Mitotic phosphoprotein 94.6 0.17 3.7E-06 44.2 7.4 70 276-353 198-268 (350)
203 PF03880 DbpA: DbpA RNA bindin 94.0 0.38 8.3E-06 33.3 7.1 59 285-352 11-74 (74)
204 KOG2591 c-Mpl binding protein, 93.5 0.17 3.7E-06 48.0 5.8 69 100-175 174-246 (684)
205 PF04847 Calcipressin: Calcipr 93.5 0.17 3.7E-06 41.9 5.3 60 114-179 8-69 (184)
206 KOG0804 Cytoplasmic Zn-finger 93.0 0.34 7.3E-06 44.9 6.8 70 99-170 72-142 (493)
207 KOG2135 Proteins containing th 92.8 0.086 1.9E-06 48.9 2.8 76 100-182 371-447 (526)
208 KOG2253 U1 snRNP complex, subu 91.9 0.11 2.4E-06 50.4 2.4 70 99-177 38-107 (668)
209 KOG2591 c-Mpl binding protein, 91.7 0.4 8.6E-06 45.6 5.7 68 276-350 176-247 (684)
210 PF04147 Nop14: Nop14-like fam 91.6 0.21 4.5E-06 52.0 4.2 20 105-126 420-439 (840)
211 KOG4285 Mitotic phosphoprotein 91.5 0.82 1.8E-05 40.1 7.0 71 101-179 197-268 (350)
212 PRK11634 ATP-dependent RNA hel 91.0 2.3 5E-05 43.0 10.9 63 284-355 496-563 (629)
213 PF04931 DNA_pol_phi: DNA poly 90.7 0.12 2.5E-06 53.8 1.4 7 118-124 741-747 (784)
214 KOG4483 Uncharacterized conser 90.2 0.49 1.1E-05 43.0 4.7 54 101-161 391-445 (528)
215 PF03880 DbpA: DbpA RNA bindin 90.0 1.8 3.9E-05 29.9 6.6 58 112-178 12-74 (74)
216 KOG4574 RNA-binding protein (c 89.9 0.24 5.2E-06 49.5 2.7 70 104-179 301-372 (1007)
217 KOG4019 Calcineurin-mediated s 89.2 0.57 1.2E-05 37.9 3.9 77 276-358 11-93 (193)
218 KOG1999 RNA polymerase II tran 89.2 2.8 6.1E-05 43.0 9.5 28 142-169 209-236 (1024)
219 PF11767 SET_assoc: Histone ly 88.0 3.4 7.3E-05 27.8 6.4 55 112-175 11-65 (66)
220 PF10567 Nab6_mRNP_bdg: RNA-re 86.8 22 0.00048 31.5 15.1 61 100-160 14-81 (309)
221 KOG0921 Dosage compensation co 86.6 2.5 5.4E-05 43.3 7.3 7 222-228 899-905 (1282)
222 KOG2318 Uncharacterized conser 85.4 3.8 8.3E-05 39.5 7.6 82 273-354 172-307 (650)
223 PF07292 NID: Nmi/IFP 35 domai 84.5 1.3 2.8E-05 31.6 3.2 56 146-202 1-73 (88)
224 PF07292 NID: Nmi/IFP 35 domai 79.6 1.3 2.7E-05 31.7 1.7 68 228-296 1-73 (88)
225 KOG3973 Uncharacterized conser 77.5 3.4 7.3E-05 37.1 4.0 14 394-407 378-391 (465)
226 PF03468 XS: XS domain; Inter 74.4 2.1 4.6E-05 32.5 1.8 51 276-329 9-68 (116)
227 KOG2295 C2H2 Zn-finger protein 74.3 0.51 1.1E-05 44.9 -1.9 70 101-170 231-300 (648)
228 PF10567 Nab6_mRNP_bdg: RNA-re 73.8 7 0.00015 34.5 4.9 81 274-354 14-107 (309)
229 COG5406 Nucleosome binding fac 73.5 3 6.4E-05 40.7 2.9 8 83-90 981-988 (1001)
230 KOG2141 Protein involved in hi 72.7 1.8 4E-05 42.9 1.3 16 321-336 625-640 (822)
231 KOG4019 Calcineurin-mediated s 71.8 3.7 8E-05 33.4 2.6 74 102-181 11-90 (193)
232 KOG2891 Surface glycoprotein [ 71.4 2.9 6.3E-05 36.3 2.1 35 276-310 150-196 (445)
233 KOG4410 5-formyltetrahydrofola 69.4 17 0.00037 31.9 6.2 48 275-328 330-378 (396)
234 KOG4410 5-formyltetrahydrofola 67.3 7 0.00015 34.2 3.5 48 101-154 330-378 (396)
235 KOG4213 RNA-binding protein La 66.3 8.1 0.00018 31.4 3.4 57 102-162 112-169 (205)
236 smart00596 PRE_C2HC PRE_C2HC d 66.1 12 0.00026 25.2 3.7 62 116-180 2-64 (69)
237 KOG2295 C2H2 Zn-finger protein 65.0 0.89 1.9E-05 43.4 -2.4 73 275-347 231-303 (648)
238 KOG2038 CAATT-binding transcri 64.9 4 8.7E-05 40.9 1.8 19 104-122 958-976 (988)
239 KOG4365 Uncharacterized conser 63.7 1.2 2.5E-05 41.3 -1.8 81 276-357 4-84 (572)
240 PF07530 PRE_C2HC: Associated 62.8 17 0.00037 24.6 4.1 62 116-180 2-64 (68)
241 PRK14548 50S ribosomal protein 62.1 35 0.00076 24.2 5.7 57 103-162 22-80 (84)
242 KOG2891 Surface glycoprotein [ 61.9 2.4 5.3E-05 36.7 -0.2 68 101-168 149-247 (445)
243 PF03468 XS: XS domain; Inter 59.3 14 0.0003 28.1 3.6 55 103-160 10-74 (116)
244 PF02714 DUF221: Domain of unk 58.7 19 0.00042 33.0 5.2 57 146-204 1-57 (325)
245 TIGR03636 L23_arch archaeal ri 57.9 49 0.0011 23.1 5.7 57 103-162 15-73 (77)
246 PF14111 DUF4283: Domain of un 57.0 10 0.00022 30.3 2.7 84 225-311 55-141 (153)
247 PF14111 DUF4283: Domain of un 56.2 13 0.00028 29.7 3.2 96 112-214 28-137 (153)
248 PF15513 DUF4651: Domain of un 55.2 28 0.00061 23.0 3.9 20 290-309 9-28 (62)
249 PF11081 DUF2890: Protein of u 54.4 6.1 0.00013 32.6 0.9 7 293-299 177-183 (187)
250 PF02724 CDC45: CDC45-like pro 53.6 6.9 0.00015 39.5 1.4 7 345-351 544-550 (622)
251 KOG4483 Uncharacterized conser 52.5 36 0.00077 31.6 5.5 55 275-336 391-446 (528)
252 PF02724 CDC45: CDC45-like pro 52.4 8.9 0.00019 38.8 1.9 9 198-206 339-347 (622)
253 smart00596 PRE_C2HC PRE_C2HC d 50.5 39 0.00085 22.9 4.1 62 290-354 2-64 (69)
254 KOG3064 RNA-binding nuclear pr 50.5 10 0.00022 32.7 1.7 7 146-152 284-290 (303)
255 PRK14548 50S ribosomal protein 50.2 61 0.0013 23.0 5.3 56 278-336 23-80 (84)
256 COG4907 Predicted membrane pro 47.6 40 0.00087 32.0 5.1 13 327-339 525-537 (595)
257 COG4371 Predicted membrane pro 46.6 30 0.00064 29.9 3.8 13 392-404 80-92 (334)
258 KOG4008 rRNA processing protei 45.3 19 0.00041 30.8 2.5 37 96-132 35-71 (261)
259 KOG2236 Uncharacterized conser 45.2 1.8E+02 0.0039 27.9 8.9 11 197-207 246-256 (483)
260 PF07530 PRE_C2HC: Associated 44.9 69 0.0015 21.6 4.8 63 290-355 2-65 (68)
261 COG4907 Predicted membrane pro 44.8 22 0.00048 33.6 3.1 12 329-340 524-535 (595)
262 KOG1295 Nonsense-mediated deca 44.2 32 0.00069 31.8 3.9 67 276-342 8-77 (376)
263 PF02714 DUF221: Domain of unk 41.8 30 0.00065 31.7 3.6 36 320-357 1-36 (325)
264 COG5193 LHP1 La protein, small 40.8 13 0.00028 34.4 1.0 61 101-161 174-244 (438)
265 KOG1295 Nonsense-mediated deca 40.7 29 0.00062 32.1 3.1 69 100-168 6-77 (376)
266 PTZ00415 transmission-blocking 40.4 10 0.00023 41.8 0.4 8 128-135 286-293 (2849)
267 COG4547 CobT Cobalamin biosynt 39.3 20 0.00043 33.9 1.9 10 167-176 425-434 (620)
268 COG5638 Uncharacterized conser 38.6 43 0.00093 31.1 3.8 37 100-136 145-186 (622)
269 COG5193 LHP1 La protein, small 38.4 15 0.00033 34.0 1.0 60 276-335 175-244 (438)
270 KOG4213 RNA-binding protein La 38.3 45 0.00098 27.3 3.5 71 276-351 112-183 (205)
271 KOG4008 rRNA processing protei 37.3 31 0.00066 29.6 2.5 32 275-306 40-71 (261)
272 TIGR02542 B_forsyth_147 Bacter 37.1 1.2E+02 0.0026 22.8 5.3 106 109-235 11-129 (145)
273 TIGR00927 2A1904 K+-dependent 36.0 18 0.00039 37.9 1.2 10 102-111 905-914 (1096)
274 TIGR00927 2A1904 K+-dependent 35.4 15 0.00033 38.4 0.6 9 144-152 932-940 (1096)
275 PF11823 DUF3343: Protein of u 35.2 1.4E+02 0.0031 20.2 5.4 60 144-207 2-64 (73)
276 PF07423 DUF1510: Protein of u 34.4 42 0.00091 28.7 3.0 13 112-124 149-161 (217)
277 KOG4365 Uncharacterized conser 34.0 8.5 0.00018 35.9 -1.3 77 102-179 4-80 (572)
278 KOG2187 tRNA uracil-5-methyltr 31.9 81 0.0018 30.7 4.7 43 317-359 63-105 (534)
279 PF04026 SpoVG: SpoVG; InterP 29.4 1.1E+02 0.0024 21.7 4.0 26 127-152 2-27 (84)
280 TIGR03636 L23_arch archaeal ri 29.0 2E+02 0.0044 20.0 5.3 56 278-336 16-73 (77)
281 PF11823 DUF3343: Protein of u 28.7 78 0.0017 21.6 3.1 26 318-343 2-27 (73)
282 PF08206 OB_RNB: Ribonuclease 27.1 17 0.00038 23.6 -0.4 36 317-353 8-44 (58)
283 COG5638 Uncharacterized conser 26.7 2.3E+02 0.005 26.6 6.4 82 272-353 143-296 (622)
284 COG0445 GidA Flavin-dependent 26.1 2.5E+02 0.0055 27.9 6.9 91 226-324 237-342 (621)
285 PF03439 Spt5-NGN: Early trans 25.6 2E+02 0.0044 20.2 4.9 35 301-340 33-67 (84)
286 KOG4434 Molecular chaperone SE 25.5 15 0.00033 33.5 -1.2 11 100-110 397-407 (520)
287 KOG2147 Nucleolar protein invo 24.7 1E+02 0.0022 31.4 4.1 14 113-126 396-409 (823)
288 PRK13259 regulatory protein Sp 24.4 1.4E+02 0.0031 21.7 3.8 26 127-152 2-27 (94)
289 PRK12280 rplW 50S ribosomal pr 24.3 2.3E+02 0.0049 22.9 5.3 34 103-136 23-58 (158)
290 COG0018 ArgS Arginyl-tRNA synt 24.2 6.6E+02 0.014 25.4 9.7 97 114-217 59-165 (577)
291 KOG3875 Peroxisomal biogenesis 24.2 1.1E+02 0.0025 27.5 3.9 6 390-395 80-85 (362)
292 PTZ00110 helicase; Provisional 24.0 1.2E+02 0.0026 30.2 4.7 11 388-398 52-62 (545)
293 KOG0156 Cytochrome P450 CYP2 s 23.8 1.6E+02 0.0035 28.9 5.4 62 102-173 33-97 (489)
294 PF14893 PNMA: PNMA 23.2 68 0.0015 29.5 2.5 75 276-356 19-98 (331)
295 PF07423 DUF1510: Protein of u 23.2 65 0.0014 27.6 2.2 12 154-165 153-164 (217)
296 PF00403 HMA: Heavy-metal-asso 22.6 2.2E+02 0.0047 18.2 6.3 54 277-336 1-58 (62)
297 PF03896 TRAP_alpha: Transloco 21.6 49 0.0011 29.7 1.2 8 101-108 84-91 (285)
298 PF14026 DUF4242: Protein of u 21.5 2.9E+02 0.0062 19.1 7.0 60 278-340 3-69 (77)
299 KOG4264 Nucleo-cytoplasmic pro 20.7 45 0.00097 32.2 0.8 13 148-160 214-226 (694)
300 KOG1999 RNA polymerase II tran 20.6 61 0.0013 34.0 1.8 17 282-298 446-462 (1024)
301 PRK07772 single-stranded DNA-b 20.3 2.5E+02 0.0055 23.4 5.1 59 345-403 97-155 (186)
302 COG5593 Nucleic-acid-binding p 20.3 76 0.0016 30.9 2.2 21 102-122 799-819 (821)
303 KOG0020 Endoplasmic reticulum 20.3 1.9E+02 0.0041 28.1 4.7 24 101-125 336-359 (785)
304 cd04889 ACT_PDH-BS-like C-term 20.1 2.3E+02 0.0051 17.6 5.0 43 289-334 12-55 (56)
No 1
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.2e-52 Score=362.73 Aligned_cols=257 Identities=42% Similarity=0.685 Sum_probs=244.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCcc-CCceEEE
Q 015292 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF-KGKKIRC 175 (409)
Q Consensus 97 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~-~g~~l~v 175 (409)
.++..+.|||+.||.++.+++|.-+|.+.|+|-.++|++++.+|.+||||||.|++.+.|+.|++.||+..| .|+.|.|
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred CCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE
Confidence 457899999999999999999999999999999999999999999999999999999999999999999998 5999999
Q ss_pred eecccccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCC
Q 015292 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN 255 (409)
Q Consensus 176 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~ 255 (409)
..+..+++|||+|+|+.+++++|++.+++.+++|..|.+...+....+++|||||+|.++..|..+...|-...+++.++
T Consensus 159 c~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn 238 (506)
T KOG0117|consen 159 CVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGN 238 (506)
T ss_pred EEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCC
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred CcceecCCCCCCCC-CCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHH
Q 015292 256 APTVSWADPRNVDS-SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (409)
Q Consensus 256 ~~~~~~~~~~~~~~-~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~ 334 (409)
.+.|.|+.+..... ......+.|||+||+.++|++.|+.+|++||.|.+|+.++| ||||+|.+.++|.+|+
T Consensus 239 ~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm 310 (506)
T KOG0117|consen 239 AITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAM 310 (506)
T ss_pred cceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHH
Confidence 99999999987665 45567799999999999999999999999999999999854 9999999999999999
Q ss_pred HHhCCceecCeEEEEEecCCCCccCCC
Q 015292 335 KNTEKYELDGQALECSLAKPQADQKSA 361 (409)
Q Consensus 335 ~~l~~~~~~g~~l~v~~a~~~~~~~~~ 361 (409)
..|||..|+|..|.|.+|+|....+..
T Consensus 311 ~~~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 311 KETNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred HHhcCceecCceEEEEecCChhhhccc
Confidence 999999999999999999998776543
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.1e-47 Score=357.96 Aligned_cols=255 Identities=20% Similarity=0.380 Sum_probs=227.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeeccc
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 180 (409)
.++|||+|||+++|+++|+++|+.||+|.+|+|++++.+|+++|||||+|.+.++|.+||+.|++..|.|++|.|.++.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred ------ccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 015292 181 ------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGT 254 (409)
Q Consensus 181 ------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~ 254 (409)
..+|||+|||..+++++|..+|+.+|. |..+.++.+ ..++.++|||||+|.+.++|..|+..|++..+....
T Consensus 83 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~-i~~~~~~~~-~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~ 160 (352)
T TIGR01661 83 SSDSIKGANLYVSGLPKTMTQHELESIFSPFGQ-IITSRILSD-NVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCT 160 (352)
T ss_pred cccccccceEEECCccccCCHHHHHHHHhccCC-EEEEEEEec-CCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCc
Confidence 357999999999999999999999999 888888887 567789999999999999999999999987665555
Q ss_pred CCcceecCCCCCCCC-----------------------------------------------------------------
Q 015292 255 NAPTVSWADPRNVDS----------------------------------------------------------------- 269 (409)
Q Consensus 255 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 269 (409)
..+.+.|+.......
T Consensus 161 ~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (352)
T TIGR01661 161 EPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHA 240 (352)
T ss_pred eeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccc
Confidence 556666653222000
Q ss_pred -----------------------CCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCC
Q 015292 270 -----------------------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326 (409)
Q Consensus 270 -----------------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~ 326 (409)
.....+++|||+|||+.+++++|+++|++||.|.+++|+++..++.+||||||+|.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~ 320 (352)
T TIGR01661 241 AQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTN 320 (352)
T ss_pred cccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECC
Confidence 001113479999999999999999999999999999999999888889999999999
Q ss_pred HHHHHHHHHHhCCceecCeEEEEEecCCCCc
Q 015292 327 RSSAMKALKNTEKYELDGQALECSLAKPQAD 357 (409)
Q Consensus 327 ~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 357 (409)
.++|.+||..|||..|+||.|+|.|+..+..
T Consensus 321 ~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 321 YDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999999999999987653
No 3
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=9.7e-46 Score=350.86 Aligned_cols=251 Identities=35% Similarity=0.605 Sum_probs=226.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccC-CceEEEe
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK-GKKIRCS 176 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~-g~~l~v~ 176 (409)
|...++|||+|||+++++++|+++|++||.|.+|+|+++ .+|+++|||||+|.+.++|.+||+.||+..+. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 445689999999999999999999999999999999999 78999999999999999999999999999885 8999999
Q ss_pred ecccccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCC
Q 015292 177 TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA 256 (409)
Q Consensus 177 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 256 (409)
.+...++|||+|||+.+++++|.+.|+.++..+..+.+.......+.+++||||+|.+..+|..|+..|....+.+.++.
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 99899999999999999999999999999876766666554455678899999999999999999999988778889999
Q ss_pred cceecCCCCCCCC-CCCccceEEEEcCCCCCCCHHHHHHHHhhc--CceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHH
Q 015292 257 PTVSWADPRNVDS-SGASQVKAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333 (409)
Q Consensus 257 ~~~~~~~~~~~~~-~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A 333 (409)
+.+.|+.+..... ......++|||+||+..+++++|+++|++| |.|.+|.++ ++||||+|.+.++|.+|
T Consensus 214 I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 214 IAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKA 285 (578)
T ss_pred EEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHH
Confidence 9999998765433 233456899999999999999999999999 999999876 37999999999999999
Q ss_pred HHHhCCceecCeEEEEEecCCCCc
Q 015292 334 LKNTEKYELDGQALECSLAKPQAD 357 (409)
Q Consensus 334 ~~~l~~~~~~g~~l~v~~a~~~~~ 357 (409)
+..||+..|.|+.|+|.|+++...
T Consensus 286 i~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 286 MDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHHhCCCEECCEEEEEEEccCCCc
Confidence 999999999999999999988644
No 4
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.2e-44 Score=292.23 Aligned_cols=254 Identities=22% Similarity=0.393 Sum_probs=230.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
..++|.|.-||..+|+++|+.+|...|+|++|++++|+.+|.+.||+||.|-++++|.+|+..|||..|..++|+|+++.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc------cccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCC
Q 015292 180 AK------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLG 253 (409)
Q Consensus 180 ~~------~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~ 253 (409)
+. ..|||++||+.+|..+|..+|++||. |...++..+ ..++.++|.+||.|.....|..|+..+|+......
T Consensus 120 PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGr-IItSRiL~d-qvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~ 197 (360)
T KOG0145|consen 120 PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGR-IITSRILVD-QVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGC 197 (360)
T ss_pred CChhhhcccceEEecCCccchHHHHHHHHHHhhh-hhhhhhhhh-cccceecceeEEEecchhHHHHHHHhccCCCCCCC
Confidence 75 57999999999999999999999999 666677777 67899999999999999999999999999877777
Q ss_pred CCCcceecCCCCCCCC-----------------------------------------------------------CCCcc
Q 015292 254 TNAPTVSWADPRNVDS-----------------------------------------------------------SGASQ 274 (409)
Q Consensus 254 ~~~~~~~~~~~~~~~~-----------------------------------------------------------~~~~~ 274 (409)
...+.|.++..+.... .....
T Consensus 198 tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~ 277 (360)
T KOG0145|consen 198 TEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGG 277 (360)
T ss_pred CCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCC
Confidence 7777777765432111 01112
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCC
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (409)
+++|||.||.+++++.-|+++|.+||.|.+|+|++|..+++++|||||.+.+-++|..||..|||..+++|.|.|+|...
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred C
Q 015292 355 Q 355 (409)
Q Consensus 355 ~ 355 (409)
+
T Consensus 358 k 358 (360)
T KOG0145|consen 358 K 358 (360)
T ss_pred C
Confidence 4
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.7e-42 Score=341.27 Aligned_cols=252 Identities=27% Similarity=0.454 Sum_probs=220.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecccc
Q 015292 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (409)
Q Consensus 102 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 181 (409)
.+|||+|||+++|+++|+++|++||.|.+|+|+++..+++++|||||+|.+.++|.+|++.+++..|.|+.|+|.++...
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999765210
Q ss_pred --------------------------------------------------------------------------------
Q 015292 182 -------------------------------------------------------------------------------- 181 (409)
Q Consensus 182 -------------------------------------------------------------------------------- 181 (409)
T Consensus 81 ~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~ 160 (562)
T TIGR01628 81 PSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVY 160 (562)
T ss_pred ccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEE
Confidence
Q ss_pred ------------------cccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHH
Q 015292 182 ------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243 (409)
Q Consensus 182 ------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 243 (409)
.+|||+|||..+++++|+++|+.||. |.++.++.+ ..+.++|||||.|.+.++|.+|+.
T Consensus 161 v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~-i~~~~i~~~--~~g~~~G~afV~F~~~e~A~~Av~ 237 (562)
T TIGR01628 161 VGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGE-ITSAAVMKD--GSGRSRGFAFVNFEKHEDAAKAVE 237 (562)
T ss_pred EeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCC-EEEEEEEEC--CCCCcccEEEEEECCHHHHHHHHH
Confidence 13788999999999999999999998 888888887 568899999999999999999999
Q ss_pred HhcCCCccCC--CCCcceecCCCCCCCC--------------CCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEee
Q 015292 244 KMTNPNFKLG--TNAPTVSWADPRNVDS--------------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307 (409)
Q Consensus 244 ~~~~~~~~~~--~~~~~~~~~~~~~~~~--------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i 307 (409)
.+++..+... +..+.+.++..+.... .....+.+|||+||+..+++++|+++|++||.|.+|+|
T Consensus 238 ~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i 317 (562)
T TIGR01628 238 EMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKV 317 (562)
T ss_pred HhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEE
Confidence 9998765422 6677777765554331 11334678999999999999999999999999999999
Q ss_pred CCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCCCc
Q 015292 308 PPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQAD 357 (409)
Q Consensus 308 ~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 357 (409)
+.+. ++.++|||||+|.+.++|.+|+..|||..|+|++|.|.+|..+..
T Consensus 318 ~~d~-~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~ 366 (562)
T TIGR01628 318 MLDE-KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQ 366 (562)
T ss_pred EECC-CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHH
Confidence 9994 455599999999999999999999999999999999999987643
No 6
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-40 Score=270.66 Aligned_cols=226 Identities=23% Similarity=0.460 Sum_probs=191.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
..+||||+||..++|++-|..||++.|.|..++|+.+.. + |. .|. -.|..-+.. ..
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~-~-------v~--------wa~-------~p~nQsk~t-~~ 60 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL-K-------VN--------WAT-------APGNQSKPT-SN 60 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh-c-------cc--------ccc-------CcccCCCCc-cc
Confidence 468999999999999999999999999999999998621 0 00 000 001000000 01
Q ss_pred cccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcce
Q 015292 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (409)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (409)
....+||+.|...++.+.|++.|.+||. |..+++++| ..+++++||+||.|-+..+|+.|+..|++.+ +++|.++.
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGe-vS~akvirD-~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqW--lG~R~IRT 136 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGE-VSDAKVIRD-MNTGKSKGYGFVSFPNKEDAENAIQQMNGQW--LGRRTIRT 136 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccc-cccceEeec-ccCCcccceeEEeccchHHHHHHHHHhCCee--eccceeec
Confidence 1346899999999999999999999999 999999999 8899999999999999999999999999984 57899999
Q ss_pred ecCCCCCCCC------------CCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCH
Q 015292 260 SWADPRNVDS------------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER 327 (409)
Q Consensus 260 ~~~~~~~~~~------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~ 327 (409)
.|+..+.... ......++|||+||+..+|++.||+.|++||.|..|+|++++ |||||+|.+.
T Consensus 137 NWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tk 210 (321)
T KOG0148|consen 137 NWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETK 210 (321)
T ss_pred cccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecch
Confidence 9998876432 334457999999999999999999999999999999999996 9999999999
Q ss_pred HHHHHHHHHhCCceecCeEEEEEecCCCCccC
Q 015292 328 SSAMKALKNTEKYELDGQALECSLAKPQADQK 359 (409)
Q Consensus 328 e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 359 (409)
|+|.+||..|||..|.|..++|+|.+......
T Consensus 211 EaAahAIv~mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 211 EAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred hhHHHHHHHhcCceeCceEEEEeccccCCCCC
Confidence 99999999999999999999999998765543
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.6e-38 Score=305.02 Aligned_cols=240 Identities=21% Similarity=0.283 Sum_probs=204.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHh--CCCccCCceEEEeec
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL--NNTEFKGKKIRCSTS 178 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l--~~~~~~g~~l~v~~~ 178 (409)
+++|||+|||+++|+++|+++|++||.|.+|+|+++ ++||||+|.+.++|.+|+..+ ++..|.|+.|.|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 689999999999999999999999999999999864 689999999999999999864 678899999999887
Q ss_pred ccc------------------cccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHH
Q 015292 179 QAK------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY 240 (409)
Q Consensus 179 ~~~------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 240 (409)
... ..|+|.||++.++++.|.++|+.||. |..+.++++ . .+++|||+|.+.++|.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~-V~~v~i~~~-~----~~~~afVef~~~~~A~~ 149 (481)
T TIGR01649 76 TSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGK-VLRIVTFTK-N----NVFQALVEFESVNSAQH 149 (481)
T ss_pred CCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCC-EEEEEEEec-C----CceEEEEEECCHHHHHH
Confidence 421 25899999999999999999999999 999988765 1 24689999999999999
Q ss_pred HHHHhcCCCccCCCCCcceecCCCCCCC----------------------------------------------------
Q 015292 241 SRQKMTNPNFKLGTNAPTVSWADPRNVD---------------------------------------------------- 268 (409)
Q Consensus 241 a~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 268 (409)
|+..|++..+..+...+.+.|+.+....
T Consensus 150 A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 229 (481)
T TIGR01649 150 AKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHG 229 (481)
T ss_pred HHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCC
Confidence 9999999877554444444443321000
Q ss_pred ---------------------------------------CCCCccceEEEEcCCCC-CCCHHHHHHHHhhcCceeEEeeC
Q 015292 269 ---------------------------------------SSGASQVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVP 308 (409)
Q Consensus 269 ---------------------------------------~~~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~ 308 (409)
.....++++|||+||++ .+|+++|+++|+.||.|.+|+|+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~ 309 (481)
T TIGR01649 230 GPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFM 309 (481)
T ss_pred CCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 00012567999999997 69999999999999999999999
Q ss_pred CCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCCCc
Q 015292 309 PAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQAD 357 (409)
Q Consensus 309 ~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 357 (409)
+++ +|||||+|.+.++|..|+..|||..|.|++|+|.+++....
T Consensus 310 ~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~ 353 (481)
T TIGR01649 310 KNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNV 353 (481)
T ss_pred eCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccc
Confidence 874 69999999999999999999999999999999999876543
No 8
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.1e-38 Score=282.31 Aligned_cols=250 Identities=26% Similarity=0.497 Sum_probs=222.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeeccc
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 180 (409)
+.||||++||++++.++|.++|+.+|+|..+.++.++.++.++||+||.|.-.+++++|+..+++..|.||.|+|..+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999987742
Q ss_pred --------------------------------ccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEE
Q 015292 181 --------------------------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFA 228 (409)
Q Consensus 181 --------------------------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~ 228 (409)
+.+|.|+||||.+...+|..+|+.||. |..|.|.+. ..++-.|||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~-V~Ei~IP~k--~dgklcGFa 161 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGK-VVEIVIPRK--KDGKLCGFA 161 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcce-EEEEEcccC--CCCCccceE
Confidence 246999999999999999999999999 999998865 444444999
Q ss_pred EEEeCCHHHHHHHHHHhcCCCccCCCCCcceecCCCCCCCCC--------------------------------------
Q 015292 229 FIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS-------------------------------------- 270 (409)
Q Consensus 229 fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 270 (409)
||.|....+|..|+..+|+. .+.|+++.|.|+.++..-..
T Consensus 162 FV~fk~~~dA~~Al~~~N~~--~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~ 239 (678)
T KOG0127|consen 162 FVQFKEKKDAEKALEFFNGN--KIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDS 239 (678)
T ss_pred EEEEeeHHHHHHHHHhccCc--eecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccc
Confidence 99999999999999999986 67899999999976531000
Q ss_pred ------C------------------------------------------CccceEEEEcCCCCCCCHHHHHHHHhhcCce
Q 015292 271 ------G------------------------------------------ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI 302 (409)
Q Consensus 271 ------~------------------------------------------~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v 302 (409)
. ..-..+|||+|||+++|++.|.+.|++||.|
T Consensus 240 edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v 319 (678)
T KOG0127|consen 240 EDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEV 319 (678)
T ss_pred cccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccc
Confidence 0 0003899999999999999999999999999
Q ss_pred eEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhC-----C-ceecCeEEEEEecCCC
Q 015292 303 TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE-----K-YELDGQALECSLAKPQ 355 (409)
Q Consensus 303 ~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~-----~-~~~~g~~l~v~~a~~~ 355 (409)
.++.|+.++.++.++|.|||.|.+..+|..||.... | ..|.||.|.|..|-+.
T Consensus 320 ~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 320 KYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred eeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccch
Confidence 999999999999999999999999999999999762 3 6789999999998664
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=5.9e-37 Score=295.42 Aligned_cols=250 Identities=23% Similarity=0.410 Sum_probs=214.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
....++|||+|||+.+++++|+++|++||.|..|+|+.++.+|.++|||||+|.+.++|.+||. |++..|.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3457899999999999999999999999999999999999999999999999999999999995 999999999999987
Q ss_pred ccc------------------ccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHH
Q 015292 178 SQA------------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239 (409)
Q Consensus 178 ~~~------------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 239 (409)
+.. ..+|||+|||..+++++|..+|+.||. |..+.++.+ ..++.++|||||+|.+.+.|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~-i~~v~~~~d-~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGD-IEDVQLHRD-PETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC-eEEEEEEEc-CCCCccceEEEEEECCHHHHH
Confidence 532 257999999999999999999999999 999999988 567889999999999999999
Q ss_pred HHHHHhcCCCccCCCCCcceecCCCCCC----------------------------------------------------
Q 015292 240 YSRQKMTNPNFKLGTNAPTVSWADPRNV---------------------------------------------------- 267 (409)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 267 (409)
.|+..|++ +.+.++.+.|.|+.....
T Consensus 243 ~A~~~l~g--~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T TIGR01622 243 EALEVMNG--FELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIA 320 (457)
T ss_pred HHHHhcCC--cEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhh
Confidence 99999998 455677777777321000
Q ss_pred ---------------C------------------C-CCCccceEEEEcCCCCCCC----------HHHHHHHHhhcCcee
Q 015292 268 ---------------D------------------S-SGASQVKAVYVKNLPRNVT----------QDQLKKLFEHHGRIT 303 (409)
Q Consensus 268 ---------------~------------------~-~~~~~~~~l~V~nLp~~~t----------~~~L~~~F~~~G~v~ 303 (409)
. . .....+++|+|.||....+ .++|++.|++||.|.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~ 400 (457)
T TIGR01622 321 LMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVV 400 (457)
T ss_pred hhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCee
Confidence 0 0 0113468899999954443 368999999999999
Q ss_pred EEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCCC
Q 015292 304 KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (409)
Q Consensus 304 ~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 356 (409)
.|.|.... +.|++||+|.++++|.+|+..|||..|+|+.|.|.|.....
T Consensus 401 ~v~v~~~~----~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~ 449 (457)
T TIGR01622 401 HIYVDTKN----SAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDV 449 (457)
T ss_pred EEEEeCCC----CceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHH
Confidence 99997432 36999999999999999999999999999999999987543
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=2.8e-36 Score=273.33 Aligned_cols=174 Identities=26% Similarity=0.463 Sum_probs=156.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
....++|||+|||+++|+++|+++|+.||+|.+|+|+++..+++++|||||+|.+.++|.+|++.|++..|.+++|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cccccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCc
Q 015292 178 SQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257 (409)
Q Consensus 178 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 257 (409)
+.+...
T Consensus 184 a~p~~~-------------------------------------------------------------------------- 189 (346)
T TIGR01659 184 ARPGGE-------------------------------------------------------------------------- 189 (346)
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 542100
Q ss_pred ceecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHh
Q 015292 258 TVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (409)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l 337 (409)
....++|||+|||..+|+++|+++|++||.|..++|++++.++.++|||||+|.+.++|.+||..|
T Consensus 190 --------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 190 --------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISAL 255 (346)
T ss_pred --------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 000157999999999999999999999999999999999988888999999999999999999999
Q ss_pred CCceecC--eEEEEEecCCCCccC
Q 015292 338 EKYELDG--QALECSLAKPQADQK 359 (409)
Q Consensus 338 ~~~~~~g--~~l~v~~a~~~~~~~ 359 (409)
|+..|.+ ++|+|.++......+
T Consensus 256 ng~~~~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 256 NNVIPEGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred CCCccCCCceeEEEEECCcccccc
Confidence 9998866 799999998765543
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.3e-35 Score=290.21 Aligned_cols=245 Identities=24% Similarity=0.438 Sum_probs=202.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc------------CCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSI------------GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~------------G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~ 167 (409)
..++|||+|||+++|+++|+++|..+ +.|..+.+ +..+|||||+|.+.++|..|| .|++..
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l~g~~ 246 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-ALDSII 246 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cCCCeE
Confidence 46799999999999999999999975 34555554 345899999999999999999 599999
Q ss_pred cCCceEEEeecc-----------------------------------cccccccCCCCCCCChHHHHHHHHhhCCceeEE
Q 015292 168 FKGKKIRCSTSQ-----------------------------------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGV 212 (409)
Q Consensus 168 ~~g~~l~v~~~~-----------------------------------~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~ 212 (409)
|.|+.|.|.... ...+|||+|||..+++++|.++|+.||. |..+
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~~ 325 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGD-LKAF 325 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eeEE
Confidence 999999996421 1257999999999999999999999999 9999
Q ss_pred EEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcceecCCCCCCCC-----------------------
Q 015292 213 ELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS----------------------- 269 (409)
Q Consensus 213 ~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 269 (409)
.++.+ ..++.++|||||+|.+...|..|+..|++.. +.++.+.|.++.......
T Consensus 326 ~~~~~-~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~--~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (509)
T TIGR01642 326 NLIKD-IATGLSKGYAFCEYKDPSVTDVAIAALNGKD--TGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSIL 402 (509)
T ss_pred EEEec-CCCCCcCeEEEEEECCHHHHHHHHHHcCCCE--ECCeEEEEEECccCCCCCCccccccccccccccccchhhhc
Confidence 99988 6788999999999999999999999999864 567777777764321110
Q ss_pred -CCCccceEEEEcCCCCCC----------CHHHHHHHHhhcCceeEEeeCCCC---CCCCCCcEEEEEeCCHHHHHHHHH
Q 015292 270 -SGASQVKAVYVKNLPRNV----------TQDQLKKLFEHHGRITKVVVPPAK---PGQEKNRIGFVHFAERSSAMKALK 335 (409)
Q Consensus 270 -~~~~~~~~l~V~nLp~~~----------t~~~L~~~F~~~G~v~~v~i~~~~---~~~~~~g~afV~F~~~e~A~~A~~ 335 (409)
....++.+|+|.||...- ..++|+++|++||.|..|.|++.. ....+.|+|||+|.+.++|.+|+.
T Consensus 403 ~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~ 482 (509)
T TIGR01642 403 QIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAME 482 (509)
T ss_pred cccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHH
Confidence 012356889999996421 236899999999999999998753 223346899999999999999999
Q ss_pred HhCCceecCeEEEEEecCCC
Q 015292 336 NTEKYELDGQALECSLAKPQ 355 (409)
Q Consensus 336 ~l~~~~~~g~~l~v~~a~~~ 355 (409)
.|||..|+|+.|.|.|....
T Consensus 483 ~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 483 GMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred HcCCCEECCeEEEEEEeCHH
Confidence 99999999999999997653
No 12
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.4e-36 Score=265.31 Aligned_cols=255 Identities=21% Similarity=0.423 Sum_probs=226.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCc-cCC--ceEEEe
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE-FKG--KKIRCS 176 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~-~~g--~~l~v~ 176 (409)
+.-.|||+-||..++|.+|+.+|++||.|.+|.|++|+.++.++|||||.|.+.++|.+|+.+||+.. |.| ..|.|+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 34569999999999999999999999999999999999999999999999999999999999999875 444 678888
Q ss_pred eccc-------ccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCC
Q 015292 177 TSQA-------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPN 249 (409)
Q Consensus 177 ~~~~-------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 249 (409)
++.. +++|||+.|++.+++.+++++|++||. |..|.|+++ ..+.++|++||.|.+.+.|..|++.||+..
T Consensus 113 ~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~-Ied~~ilrd--~~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 113 YADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGH-IEDCYILRD--PDGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred ccchhhhccccchhhhhhhccccccHHHHHHHHHhhCc-cchhhheec--ccccccceeEEEEehHHHHHHHHHhhccce
Confidence 8764 467899999999999999999999999 999999998 789999999999999999999999999864
Q ss_pred c-cCCCCCcceecCCCCCCCCCCCc------------------c------------------------------------
Q 015292 250 F-KLGTNAPTVSWADPRNVDSSGAS------------------Q------------------------------------ 274 (409)
Q Consensus 250 ~-~~~~~~~~~~~~~~~~~~~~~~~------------------~------------------------------------ 274 (409)
. ......+.|.|++++..+..... .
T Consensus 190 tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l 269 (510)
T KOG0144|consen 190 TMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPL 269 (510)
T ss_pred eeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCc
Confidence 3 34556677788776542210000 0
Q ss_pred --------------------------------------------------------------------------------
Q 015292 275 -------------------------------------------------------------------------------- 274 (409)
Q Consensus 275 -------------------------------------------------------------------------------- 274 (409)
T Consensus 270 ~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~ 349 (510)
T KOG0144|consen 270 NATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAG 349 (510)
T ss_pred chhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccccc
Confidence
Q ss_pred --------------------------------------------------------------------------ceEEEE
Q 015292 275 --------------------------------------------------------------------------VKAVYV 280 (409)
Q Consensus 275 --------------------------------------------------------------------------~~~l~V 280 (409)
+..|||
T Consensus 350 ~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfi 429 (510)
T KOG0144|consen 350 GMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFI 429 (510)
T ss_pred ccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceee
Confidence 588999
Q ss_pred cCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCCCc
Q 015292 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQAD 357 (409)
Q Consensus 281 ~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 357 (409)
.+||.+.-+.+|-..|.+||.|.+.++..|+.++.+++|+||.|++..+|..||..|||+.|++++|+|.+.+.+..
T Consensus 430 yhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 430 YHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred eeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876544
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=3.5e-35 Score=281.96 Aligned_cols=240 Identities=18% Similarity=0.258 Sum_probs=201.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCC--ceEEEeec
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG--KKIRCSTS 178 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g--~~l~v~~~ 178 (409)
-.+|||+||++.+|+++|+++|+.||.|.+|.|+++.. .++|||+|.+.++|.+|++.|||..|.| +.|+|.++
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYA 171 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEe
Confidence 35799999999999999999999999999999987642 4789999999999999999999999864 35655443
Q ss_pred c-------------------------------------------------------------------------------
Q 015292 179 Q------------------------------------------------------------------------------- 179 (409)
Q Consensus 179 ~------------------------------------------------------------------------------- 179 (409)
.
T Consensus 172 k~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
T TIGR01649 172 KPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRY 251 (481)
T ss_pred cCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCC
Confidence 2
Q ss_pred ----------------------cccccccCCCCC-CCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHH
Q 015292 180 ----------------------AKYRLFIGNIPR-NWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHK 236 (409)
Q Consensus 180 ----------------------~~~~l~v~~l~~-~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~ 236 (409)
+...|||+||++ .+++++|.++|+.||. |..++++.+ .+|+|||+|.+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~-V~~vki~~~------~~g~afV~f~~~~ 324 (481)
T TIGR01649 252 RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGN-VERVKFMKN------KKETALIEMADPY 324 (481)
T ss_pred cccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCC-eEEEEEEeC------CCCEEEEEECCHH
Confidence 113689999998 6999999999999999 999999876 3699999999999
Q ss_pred HHHHHHHHhcCCCccCCCCCcceecCCCCCCCC---------------------------------CCCccceEEEEcCC
Q 015292 237 CAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---------------------------------SGASQVKAVYVKNL 283 (409)
Q Consensus 237 ~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~l~V~nL 283 (409)
.|..|+..|++.. +.++.+.+.++....... ....++.+|||+||
T Consensus 325 ~A~~Ai~~lng~~--l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NL 402 (481)
T TIGR01649 325 QAQLALTHLNGVK--LFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNI 402 (481)
T ss_pred HHHHHHHHhCCCE--ECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecC
Confidence 9999999999864 467788777654321100 00134679999999
Q ss_pred CCCCCHHHHHHHHhhcCc--eeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeE------EEEEecCCC
Q 015292 284 PRNVTQDQLKKLFEHHGR--ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA------LECSLAKPQ 355 (409)
Q Consensus 284 p~~~t~~~L~~~F~~~G~--v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~------l~v~~a~~~ 355 (409)
|..+++++|+++|+.||. |..|++.....+ ++|+|||+|.+.++|.+||..||++.|.++. |+|+|+++.
T Consensus 403 p~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~--~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 403 PLSVSEEDLKELFAENGVHKVKKFKFFPKDNE--RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCCCHHHHHHHHHhcCCccceEEEEecCCCC--cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 999999999999999998 888988765533 3699999999999999999999999999884 999999864
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=8.7e-35 Score=276.50 Aligned_cols=148 Identities=21% Similarity=0.441 Sum_probs=138.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
...++|||+|||+++++++|+++|.+||+|.+|+|+.++.+|+++|||||+|.+.++|.+|++.|||..|.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred cc-----------------ccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHH
Q 015292 179 QA-----------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYS 241 (409)
Q Consensus 179 ~~-----------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 241 (409)
.. .++|||+|||+.+++++|+.+|+.||. |.++++.++ ..++.++|||||+|.+.++|..|
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~-I~svrl~~D-~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARA-PTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCC-eeEEEEEec-CCCCCcCCeEEEEECCHHHHHHH
Confidence 31 257999999999999999999999999 999999998 56788999999999999999999
Q ss_pred HHHhcCC
Q 015292 242 RQKMTNP 248 (409)
Q Consensus 242 ~~~~~~~ 248 (409)
+..||+.
T Consensus 263 I~amNg~ 269 (612)
T TIGR01645 263 IASMNLF 269 (612)
T ss_pred HHHhCCC
Confidence 9999854
No 15
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-31 Score=244.12 Aligned_cols=250 Identities=26% Similarity=0.450 Sum_probs=218.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeeccc
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 180 (409)
.+.|||.||+++++...|.++|+.||.|++|++..+.. | ++|| ||+|.+.++|.+|++.+||..+.|++|.|.....
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 34499999999999999999999999999999999975 5 9999 9999999999999999999999999999976543
Q ss_pred --------------ccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 015292 181 --------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMT 246 (409)
Q Consensus 181 --------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 246 (409)
...+++.+++...+...|..+|+.+|. +.++.++.+ ..+.+++|+||.|.+.+.|..|+..|+
T Consensus 153 ~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~-i~s~~v~~~--~~g~~~~~gfv~f~~~e~a~~av~~l~ 229 (369)
T KOG0123|consen 153 KEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGS-ITSVAVMRD--SIGKSKGFGFVNFENPEDAKKAVETLN 229 (369)
T ss_pred hhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCc-ceEEEEeec--CCCCCCCccceeecChhHHHHHHHhcc
Confidence 246899999999999999999999999 999999998 667799999999999999999999999
Q ss_pred CCCccCCCCCcceecCCCCCCC--------------CCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCC
Q 015292 247 NPNFKLGTNAPTVSWADPRNVD--------------SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP 312 (409)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~ 312 (409)
+..+. +..+.+..+..+... .........|||.||+..++.+.|+..|+.||.|..++|+.+..
T Consensus 230 ~~~~~--~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~ 307 (369)
T KOG0123|consen 230 GKIFG--DKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDEN 307 (369)
T ss_pred CCcCC--ccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccC
Confidence 87654 444444444432211 12234568999999999999999999999999999999999887
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCCCccC
Q 015292 313 GQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359 (409)
Q Consensus 313 ~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 359 (409)
+.+ +||+||.|.+.++|.+|+..+|+..+.+++|.|.++.....+.
T Consensus 308 g~s-kG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~ 353 (369)
T KOG0123|consen 308 GKS-KGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRR 353 (369)
T ss_pred CCc-cceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccch
Confidence 776 8999999999999999999999999999999999998655543
No 16
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.1e-30 Score=237.86 Aligned_cols=240 Identities=27% Similarity=0.428 Sum_probs=214.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecccc
Q 015292 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (409)
Q Consensus 102 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 181 (409)
..|||+ +++|+..|.++|+++|+|.+++++++. | +-|||||.|.++.+|.+|++.+|...+.|++|+|.++...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 999999999999999999999999998 6 9999999999999999999999999999999999998754
Q ss_pred -cccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCccee
Q 015292 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (409)
Q Consensus 182 -~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 260 (409)
..+||.||++.++...|.++|+.||. |.+|++..+ ..| ++|| ||+|.+...|.+|+..+|+. .+.++.+.+.
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~-ilS~kv~~~--~~g-~kg~-FV~f~~e~~a~~ai~~~ng~--ll~~kki~vg 148 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGN-ILSCKVATD--ENG-SKGY-FVQFESEESAKKAIEKLNGM--LLNGKKIYVG 148 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcC-eeEEEEEEc--CCC-ceee-EEEeCCHHHHHHHHHHhcCc--ccCCCeeEEe
Confidence 34899999999999999999999999 999999998 333 9999 99999999999999999986 5567777776
Q ss_pred cCCCCCCCCC----CCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 015292 261 WADPRNVDSS----GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (409)
Q Consensus 261 ~~~~~~~~~~----~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~ 336 (409)
....+..+.. ....-+.++|.|++.+++...|..+|+.||.|..+.++.+..+. ++||+||.|.++++|..|+..
T Consensus 149 ~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~-~~~~gfv~f~~~e~a~~av~~ 227 (369)
T KOG0123|consen 149 LFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGK-SKGFGFVNFENPEDAKKAVET 227 (369)
T ss_pred eccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCC-CCCccceeecChhHHHHHHHh
Confidence 6655543321 22335789999999999999999999999999999999998887 489999999999999999999
Q ss_pred hCCceecCeEEEEEecCCC
Q 015292 337 TEKYELDGQALECSLAKPQ 355 (409)
Q Consensus 337 l~~~~~~g~~l~v~~a~~~ 355 (409)
||+..+.+..+.|..+..+
T Consensus 228 l~~~~~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 228 LNGKIFGDKELYVGRAQKK 246 (369)
T ss_pred ccCCcCCccceeecccccc
Confidence 9999999999999888763
No 17
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=2.3e-29 Score=226.34 Aligned_cols=234 Identities=25% Similarity=0.386 Sum_probs=193.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeeccc
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 180 (409)
...|.|+||||.+...+|+.+|+.||.|..|.|.+.+.+ +..|||||+|....+|..|++.+|+..|.||+|.|.|+.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dg-klcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDG-KLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCC-CccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 678999999999999999999999999999999988774 4459999999999999999999999999999999999832
Q ss_pred c-------------------------------------------------------------------------------
Q 015292 181 K------------------------------------------------------------------------------- 181 (409)
Q Consensus 181 ~------------------------------------------------------------------------------- 181 (409)
+
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 2
Q ss_pred -----------------cccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHH
Q 015292 182 -----------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQK 244 (409)
Q Consensus 182 -----------------~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 244 (409)
.+|||+|||+++|++.|.+.|+.||+ |.++.++.+ +.+++++|.|||.|.+...+..|+.+
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~-v~ya~iV~~-k~T~~skGtAFv~Fkt~~~~~~ci~~ 353 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGE-VKYAIIVKD-KDTGHSKGTAFVKFKTQIAAQNCIEA 353 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhcc-ceeEEEEec-cCCCCcccceEEEeccHHHHHHHHHh
Confidence 47999999999999999999999999 999999999 88999999999999999999999998
Q ss_pred hc----CCCccCCCCCcceecCCCCCCCC---------------------------------------------------
Q 015292 245 MT----NPNFKLGTNAPTVSWADPRNVDS--------------------------------------------------- 269 (409)
Q Consensus 245 ~~----~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------- 269 (409)
.. ...+.+.|+.+.+..+..+..-.
T Consensus 354 Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~ 433 (678)
T KOG0127|consen 354 ASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKR 433 (678)
T ss_pred cCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHH
Confidence 72 33467788888887776543110
Q ss_pred ------CCCccceEEEEcCCCCCCCHHHHHHHHhh----c-Cce-eEEeeCCCCC---CCCCCcEEEEEeCCHHHHHHHH
Q 015292 270 ------SGASQVKAVYVKNLPRNVTQDQLKKLFEH----H-GRI-TKVVVPPAKP---GQEKNRIGFVHFAERSSAMKAL 334 (409)
Q Consensus 270 ------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~----~-G~v-~~v~i~~~~~---~~~~~g~afV~F~~~e~A~~A~ 334 (409)
.....-++|.|+|||..++...|..+... | +.+ ..++.++... -+.+.||+|+.|..++.|.+|+
T Consensus 434 k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkal 513 (678)
T KOG0127|consen 434 KKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKAL 513 (678)
T ss_pred HhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhh
Confidence 00011378899999999999999988753 2 222 2344443332 2345799999999999999999
Q ss_pred HHh
Q 015292 335 KNT 337 (409)
Q Consensus 335 ~~l 337 (409)
..+
T Consensus 514 k~~ 516 (678)
T KOG0127|consen 514 KVL 516 (678)
T ss_pred hcc
Confidence 865
No 18
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.9e-28 Score=209.99 Aligned_cols=249 Identities=19% Similarity=0.393 Sum_probs=204.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc-
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ- 179 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~- 179 (409)
-++|||+.|.+.+.++.|+..|.+||+|.+|.+.-|+.|++++|||||+|.-++.|+.|++.||+..++||.|+|.+..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred ----------------cccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHH
Q 015292 180 ----------------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243 (409)
Q Consensus 180 ----------------~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 243 (409)
..+++||..+.++.++.+|+..|..||+ |..|.+.+. +..+.++||+|++|.+......|+.
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~-I~~C~LAr~-pt~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARA-PTGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcc-eeeEEeecc-CCCCCccceeeEEeccccchHHHhh
Confidence 2368999999999999999999999999 999999999 6778899999999999999999998
Q ss_pred HhcCCCccCCCCCcceecCCCCCC-----------CC-------------------------------------------
Q 015292 244 KMTNPNFKLGTNAPTVSWADPRNV-----------DS------------------------------------------- 269 (409)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~------------------------------------------- 269 (409)
.||- |-++|..++|........ +.
T Consensus 271 sMNl--FDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p 348 (544)
T KOG0124|consen 271 SMNL--FDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQP 348 (544)
T ss_pred hcch--hhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCC
Confidence 8873 233333333322111000 00
Q ss_pred ----------------------------CC--------------------------------------------------
Q 015292 270 ----------------------------SG-------------------------------------------------- 271 (409)
Q Consensus 270 ----------------------------~~-------------------------------------------------- 271 (409)
..
T Consensus 349 ~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~ 428 (544)
T KOG0124|consen 349 LGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSIS 428 (544)
T ss_pred CCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCcccc
Confidence 00
Q ss_pred --------------CccceEEEEcCC--CCCCCH---HHHHHHHhhcCceeEEeeCCCCCCCCCC----cEEEEEeCCHH
Q 015292 272 --------------ASQVKAVYVKNL--PRNVTQ---DQLKKLFEHHGRITKVVVPPAKPGQEKN----RIGFVHFAERS 328 (409)
Q Consensus 272 --------------~~~~~~l~V~nL--p~~~t~---~~L~~~F~~~G~v~~v~i~~~~~~~~~~----g~afV~F~~~e 328 (409)
...++.|.++|+ |.++++ .+|++.+++||.|.+|.|...+.+..-- ---||+|....
T Consensus 429 G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~ 508 (544)
T KOG0124|consen 429 GSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIAS 508 (544)
T ss_pred CccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhh
Confidence 000578889998 555543 6889999999999999998776554100 13699999999
Q ss_pred HHHHHHHHhCCceecCeEEEEEecC
Q 015292 329 SAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 329 ~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
++.+|+..|+|+.|+||++....-.
T Consensus 509 e~~rak~ALdGRfFgGr~VvAE~YD 533 (544)
T KOG0124|consen 509 ETHRAKQALDGRFFGGRKVVAEVYD 533 (544)
T ss_pred HHHHHHHhhccceecCceeehhhhh
Confidence 9999999999999999999876543
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=4.1e-28 Score=231.11 Aligned_cols=173 Identities=21% Similarity=0.446 Sum_probs=151.9
Q ss_pred ccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCccee
Q 015292 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (409)
Q Consensus 181 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 260 (409)
.++|||+|||+.+++++|+.+|+.||+ |.+++++.+ +.+++++|||||+|.+.+.|..|+..|++. .+.++.+.+.
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~-I~sV~I~~D-~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~--~i~GR~IkV~ 182 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNGQ--MLGGRNIKVG 182 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCC-EEEEEEeec-CCCCCcCCeEEEEeCcHHHHHHHHHhcCCe--EEecceeeec
Confidence 357999999999999999999999999 999999998 678899999999999999999999999875 5568888777
Q ss_pred cCCCCCCCC-------CCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHH
Q 015292 261 WADPRNVDS-------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333 (409)
Q Consensus 261 ~~~~~~~~~-------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A 333 (409)
+........ ......++|||+|||+++++++|+++|+.||.|.+++|.++..++.+||||||+|.+.++|.+|
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHH
Confidence 544322111 1122357999999999999999999999999999999999998888899999999999999999
Q ss_pred HHHhCCceecCeEEEEEecCCCCc
Q 015292 334 LKNTEKYELDGQALECSLAKPQAD 357 (409)
Q Consensus 334 ~~~l~~~~~~g~~l~v~~a~~~~~ 357 (409)
|..||+..|+|+.|+|.++.+...
T Consensus 263 I~amNg~elgGr~LrV~kAi~pP~ 286 (612)
T TIGR01645 263 IASMNLFDLGGQYLRVGKCVTPPD 286 (612)
T ss_pred HHHhCCCeeCCeEEEEEecCCCcc
Confidence 999999999999999999986443
No 20
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.96 E-value=2.3e-28 Score=227.04 Aligned_cols=249 Identities=22% Similarity=0.337 Sum_probs=208.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
..+.|+|+|||..+..++|..+|..||+|..|.|... --.|+|.|.++.+|+.|+..|....+...++.+.++.
T Consensus 384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~------G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP 457 (725)
T KOG0110|consen 384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG------GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAP 457 (725)
T ss_pred hcceeeeccCccccccHHHHHHhhcccccceeecCcc------cceeeeeecCccchHHHHHHhchhhhccCccccccCh
Confidence 4578999999999999999999999999999955421 1249999999999999999999877766665554331
Q ss_pred c--------------------------------------------------------ccccccCCCCCCCChHHHHHHHH
Q 015292 180 A--------------------------------------------------------KYRLFIGNIPRNWGSEDLQKVVS 203 (409)
Q Consensus 180 ~--------------------------------------------------------~~~l~v~~l~~~~~~~~l~~~f~ 203 (409)
. ...||+.||++.++.+.|..+|.
T Consensus 458 ~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~ 537 (725)
T KOG0110|consen 458 EDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFS 537 (725)
T ss_pred hhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHH
Confidence 0 02399999999999999999999
Q ss_pred hhCCceeEEEEeecCCC--CCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcceecCCCCCCC-----CCCCccce
Q 015292 204 EVGPGVTGVELVKDMKN--SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD-----SSGASQVK 276 (409)
Q Consensus 204 ~~g~~v~~~~~~~~~~~--~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 276 (409)
..|. |.++.|...... ...|.|||||+|.+.+.|..|++.|+++ .+.|+.+.+.++...... .+....++
T Consensus 538 k~G~-VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgt--vldGH~l~lk~S~~k~~~~~gK~~~~kk~~t 614 (725)
T KOG0110|consen 538 KQGT-VLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGT--VLDGHKLELKISENKPASTVGKKKSKKKKGT 614 (725)
T ss_pred hcCe-EEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCc--eecCceEEEEeccCccccccccccccccccc
Confidence 9998 888877765333 4467899999999999999999999976 677888888888722211 12223368
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCCC
Q 015292 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (409)
Q Consensus 277 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 356 (409)
+|.|+|||+..+..+|+.+|..||.|.+|+|+.......+||||||.|-++.+|.+|+.+|..+.|.||+|.+.||+...
T Consensus 615 KIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 615 KILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred eeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 99999999999999999999999999999999986666669999999999999999999999999999999999998754
Q ss_pred c
Q 015292 357 D 357 (409)
Q Consensus 357 ~ 357 (409)
.
T Consensus 695 ~ 695 (725)
T KOG0110|consen 695 T 695 (725)
T ss_pred H
Confidence 4
No 21
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=3.3e-27 Score=183.61 Aligned_cols=173 Identities=21% Similarity=0.330 Sum_probs=153.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
...||||+||+..++++-|.++|-+.|+|+.++|.+++.+...+|||||+|.+.++|.=|++.||...|.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred cccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcce
Q 015292 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (409)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (409)
....
T Consensus 88 ~~~~---------------------------------------------------------------------------- 91 (203)
T KOG0131|consen 88 AHQK---------------------------------------------------------------------------- 91 (203)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 1100
Q ss_pred ecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeE-EeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 015292 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (409)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~ 338 (409)
....+.+|||+||.+.+++..|.+.|+.||.|.. =.|+++..++.++|||||.|.+.+.+.+|+..||
T Consensus 92 -----------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~n 160 (203)
T KOG0131|consen 92 -----------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMN 160 (203)
T ss_pred -----------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhc
Confidence 0001157999999999999999999999998765 5788999988889999999999999999999999
Q ss_pred CceecCeEEEEEecCCCCccC
Q 015292 339 KYELDGQALECSLAKPQADQK 359 (409)
Q Consensus 339 ~~~~~g~~l~v~~a~~~~~~~ 359 (409)
|..++.+++.|+++..+....
T Consensus 161 gq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 161 GQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred cchhcCCceEEEEEEecCCCc
Confidence 999999999999998765543
No 22
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.95 E-value=1.7e-27 Score=215.42 Aligned_cols=247 Identities=22% Similarity=0.376 Sum_probs=207.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
...+|||+--|+..++.-+|.+||+.+|+|..|+|+.++.+++++|.|||+|.+.++...|| .|.|..+.|.+|.|...
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEeccc
Confidence 35689999999999999999999999999999999999999999999999999999999999 79999999999999876
Q ss_pred ccc--------------------cccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHH
Q 015292 179 QAK--------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCA 238 (409)
Q Consensus 179 ~~~--------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a 238 (409)
... ..|+|+||.+++++.+|+.+|.+||. |..|.++.+ ..+|.++||+||+|.+.++|
T Consensus 256 Eaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~-Ie~v~l~~d-~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 256 EAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGK-IENVQLTKD-SETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred HHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCccc-ceeeeeccc-cccccccCcceEEEecHHHH
Confidence 421 34899999999999999999999999 999999998 56999999999999999999
Q ss_pred HHHHHHhcCCCccCCCCCcceecCCCCCCCC-------------------------------------------------
Q 015292 239 EYSRQKMTNPNFKLGTNAPTVSWADPRNVDS------------------------------------------------- 269 (409)
Q Consensus 239 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 269 (409)
.+|+..||+ |.+.|+.+.|..-..+....
T Consensus 334 r~a~e~lng--felAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~ 411 (549)
T KOG0147|consen 334 RKALEQLNG--FELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLL 411 (549)
T ss_pred HHHHHHhcc--ceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHh
Confidence 999999998 77777666554322111000
Q ss_pred -------------------CCC-------ccceEEEEcCC--CCCCC--------HHHHHHHHhhcCceeEEeeCCCCCC
Q 015292 270 -------------------SGA-------SQVKAVYVKNL--PRNVT--------QDQLKKLFEHHGRITKVVVPPAKPG 313 (409)
Q Consensus 270 -------------------~~~-------~~~~~l~V~nL--p~~~t--------~~~L~~~F~~~G~v~~v~i~~~~~~ 313 (409)
... .++.||.++|+ |...| .++|.+-+.+||.|..|.+-++.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns-- 489 (549)
T KOG0147|consen 412 LAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNS-- 489 (549)
T ss_pred ccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCC--
Confidence 000 22456666666 22222 26778888999999999986654
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCC
Q 015292 314 QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (409)
Q Consensus 314 ~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (409)
-|+.||.|.+.+.|..|+..|||.+|.|+.|.+.|-...
T Consensus 490 ---~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 490 ---AGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLE 528 (549)
T ss_pred ---CceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehh
Confidence 589999999999999999999999999999999987654
No 23
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.95 E-value=1e-25 Score=197.54 Aligned_cols=143 Identities=29% Similarity=0.512 Sum_probs=128.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHh-ccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQ-SIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
.+.+||.|||+++.|.+|++||. +.|.|..|.|..|.. |+++|+|.|+|++++.+++|++.||...+.||+|.|+...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 45699999999999999999997 589999999999954 9999999999999999999999999999999999997543
Q ss_pred cc------------------------------------------------------------------------------
Q 015292 180 AK------------------------------------------------------------------------------ 181 (409)
Q Consensus 180 ~~------------------------------------------------------------------------------ 181 (409)
..
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 21
Q ss_pred -------------cccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 015292 182 -------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN 247 (409)
Q Consensus 182 -------------~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 247 (409)
..+||.||...+....|.+.|.-.|. +.++.+-.+ ..+.+++++.++|...-.|-.++..+..
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGk-v~~vdf~id--KeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGK-VQSVDFSID--KEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhcccee-eeeeceeec--cccccCCeeEEEecchHHHHHHHHhhcc
Confidence 35789999999999999999999998 999988887 6678999999999999889888887774
No 24
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.2e-26 Score=203.31 Aligned_cols=172 Identities=24% Similarity=0.461 Sum_probs=152.0
Q ss_pred cccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCC-ccCCCCCccee
Q 015292 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPN-FKLGTNAPTVS 260 (409)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~-~~~~~~~~~~~ 260 (409)
-+|||+.+|+.|++.+|+.+|.+||. |..|.+++| +.++.++|+|||.|.+.++|..|+.++++.. +......+.|.
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~-V~einl~kD-k~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGN-VYEINLIKD-KSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCc-eeEEEeecc-cccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 46999999999999999999999999 999999999 8899999999999999999999999998753 34455677788
Q ss_pred cCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCc
Q 015292 261 WADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340 (409)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~ 340 (409)
+++....+. ...++|||+-|+..+|+.+|+++|++||.|++|+|+++.++.+ ||||||+|.+.+.|..||+.|||.
T Consensus 113 ~Ad~E~er~---~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~s-RGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 113 YADGERERI---VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLS-RGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred ccchhhhcc---ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccc-cceeEEEEehHHHHHHHHHhhccc
Confidence 877655432 3357999999999999999999999999999999999988877 999999999999999999999985
Q ss_pred e-ecC--eEEEEEecCCCCccC
Q 015292 341 E-LDG--QALECSLAKPQADQK 359 (409)
Q Consensus 341 ~-~~g--~~l~v~~a~~~~~~~ 359 (409)
. +.| .+|.|.||.++..+.
T Consensus 189 ~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 189 QTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred eeeccCCCceEEEecccCCCch
Confidence 4 555 689999999887654
No 25
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=6.9e-26 Score=211.35 Aligned_cols=169 Identities=22% Similarity=0.448 Sum_probs=152.0
Q ss_pred cccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcce
Q 015292 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (409)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (409)
++.+|||+|||..+++++|+++|+.+|+ |..|+++.+ ..++.++|||||+|.+.++|..|+..|++. .+.++.+.+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~-i~~v~i~~d-~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~--~l~g~~i~v 77 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGE-IESCKLVRD-KVTGQSLGYGFVNYVRPEDAEKAVNSLNGL--RLQNKTIKV 77 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCC-EEEEEEEEc-CCCCccceEEEEEECcHHHHHHHHhhcccE--EECCeeEEE
Confidence 3578999999999999999999999999 999999998 678899999999999999999999999985 567889999
Q ss_pred ecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCC
Q 015292 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (409)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~ 339 (409)
.|+.+... ....++|||+|||..+++++|+.+|++||.|..++|+.+...+.++|||||+|.+.++|.+|+..|||
T Consensus 78 ~~a~~~~~----~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 78 SYARPSSD----SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred Eeeccccc----ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 98866542 22347899999999999999999999999999999999887777799999999999999999999999
Q ss_pred ceecC--eEEEEEecCCCC
Q 015292 340 YELDG--QALECSLAKPQA 356 (409)
Q Consensus 340 ~~~~g--~~l~v~~a~~~~ 356 (409)
..+.| ++|.|.++....
T Consensus 154 ~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 154 TTPSGCTEPITVKFANNPS 172 (352)
T ss_pred CccCCCceeEEEEECCCCC
Confidence 99877 678999987655
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=3e-25 Score=214.10 Aligned_cols=170 Identities=24% Similarity=0.387 Sum_probs=147.2
Q ss_pred cccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcce
Q 015292 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (409)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (409)
..++|||+|||..+++.+|.++|+.+|. |..|.++.+ ..++.++|||||+|.+.++|.+|+. |++. .+.++.+.+
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~-v~~v~i~~d-~~~~~skg~afVeF~~~e~A~~Al~-l~g~--~~~g~~i~v 162 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGK-VRDVQCIKD-RNSRRSKGVAYVEFYDVESVIKALA-LTGQ--MLLGRPIIV 162 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEeec-CCCCCcceEEEEEECCHHHHHHHHH-hCCC--EECCeeeEE
Confidence 4568999999999999999999999998 999999998 6788999999999999999999996 5654 445666766
Q ss_pred ecCCCCCCC--------CCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHH
Q 015292 260 SWADPRNVD--------SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331 (409)
Q Consensus 260 ~~~~~~~~~--------~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~ 331 (409)
.+....... .......++|||+|||..+++++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 163 QSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred eecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 654332111 111233689999999999999999999999999999999999988788999999999999999
Q ss_pred HHHHHhCCceecCeEEEEEecCC
Q 015292 332 KALKNTEKYELDGQALECSLAKP 354 (409)
Q Consensus 332 ~A~~~l~~~~~~g~~l~v~~a~~ 354 (409)
+|+..|||..|.|++|.|.|+..
T Consensus 243 ~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 243 EALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHhcCCcEECCEEEEEEEccC
Confidence 99999999999999999999874
No 27
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=7.5e-26 Score=186.75 Aligned_cols=152 Identities=25% Similarity=0.552 Sum_probs=142.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeeccc--
Q 015292 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA-- 180 (409)
Q Consensus 103 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~-- 180 (409)
-|||+.|...++-++|++.|.+||+|.+++|++|..|+++|||+||.|.+.++|++||..|||.-|.+|.|+..++..
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999988753
Q ss_pred --------------------ccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHH
Q 015292 181 --------------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY 240 (409)
Q Consensus 181 --------------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 240 (409)
++++|++|++.-++++.++..|+.||+ |..|++..+ +||+||.|.+.+.|..
T Consensus 144 ~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~-I~EVRvFk~-------qGYaFVrF~tkEaAah 215 (321)
T KOG0148|consen 144 SEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP-IQEVRVFKD-------QGYAFVRFETKEAAAH 215 (321)
T ss_pred cccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc-ceEEEEecc-------cceEEEEecchhhHHH
Confidence 368999999999999999999999999 999999998 9999999999999999
Q ss_pred HHHHhcCCCccCCCCCcceecCCC
Q 015292 241 SRQKMTNPNFKLGTNAPTVSWADP 264 (409)
Q Consensus 241 a~~~~~~~~~~~~~~~~~~~~~~~ 264 (409)
|+-.||+. .+.++.+++.|...
T Consensus 216 AIv~mNnt--ei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 216 AIVQMNNT--EIGGQLVRCSWGKE 237 (321)
T ss_pred HHHHhcCc--eeCceEEEEecccc
Confidence 99999987 55677777777654
No 28
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=8.7e-26 Score=185.15 Aligned_cols=171 Identities=24% Similarity=0.467 Sum_probs=156.7
Q ss_pred ccccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcc
Q 015292 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (409)
Q Consensus 179 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (409)
.++..|.|..||..+|+++++.+|...|+ |.+|++++| ..+|.+-||+||.|.+..+|.+|+..+|+ +++..+.++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGe-iEScKLvRD-KitGqSLGYGFVNYv~p~DAe~AintlNG--LrLQ~KTIK 114 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYVRPKDAEKAINTLNG--LRLQNKTIK 114 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccc-eeeeeeeec-cccccccccceeeecChHHHHHHHhhhcc--eeeccceEE
Confidence 35678999999999999999999999999 999999999 89999999999999999999999999997 578899999
Q ss_pred eecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 015292 259 VSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (409)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~ 338 (409)
|+++.|... ......|||.+||..+|..+|.++|++||.|..-+|+.|..++.+||.|||+|+...+|..||..||
T Consensus 115 VSyARPSs~----~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lN 190 (360)
T KOG0145|consen 115 VSYARPSSD----SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLN 190 (360)
T ss_pred EEeccCChh----hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhcc
Confidence 999987653 3445789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceecC--eEEEEEecCCCCc
Q 015292 339 KYELDG--QALECSLAKPQAD 357 (409)
Q Consensus 339 ~~~~~g--~~l~v~~a~~~~~ 357 (409)
|..-.| -+|.|.||.....
T Consensus 191 G~~P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 191 GQKPSGCTEPITVKFANNPSQ 211 (360)
T ss_pred CCCCCCCCCCeEEEecCCccc
Confidence 988776 5799999986544
No 29
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.93 E-value=5.5e-24 Score=190.30 Aligned_cols=246 Identities=20% Similarity=0.295 Sum_probs=186.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
......|.+++|||++|+++|.+||+.++ |..+.+.+. +|+..|-|||+|.+.+++.+|++ .+...+..|.|.|-.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEc
Confidence 44567899999999999999999999995 777666654 59999999999999999999995 688889999999977
Q ss_pred ccc-----------------ccccccCCCCCCCChHHHHHHHHhhCCceeE-EEEeecCCCCCCCccEEEEEeCCHHHHH
Q 015292 178 SQA-----------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTG-VELVKDMKNSSNNRGFAFIEYHNHKCAE 239 (409)
Q Consensus 178 ~~~-----------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 239 (409)
+.. ...|.+++||+.||+++|.++|+.+-. +.. +.++.+ ..+++.+-|||.|.+.+.++
T Consensus 83 ~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~I-v~~gi~l~~d--~rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEI-VPDGILLPMD--QRGRPTGEAFVQFESQESAE 159 (510)
T ss_pred cCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcc-cccceeeecc--CCCCcccceEEEecCHHHHH
Confidence 632 246889999999999999999998876 333 445555 66779999999999999999
Q ss_pred HHHHHhcCC----Ccc------------------CCCC--------Ccce--ecCCCCC---------------------
Q 015292 240 YSRQKMTNP----NFK------------------LGTN--------APTV--SWADPRN--------------------- 266 (409)
Q Consensus 240 ~a~~~~~~~----~~~------------------~~~~--------~~~~--~~~~~~~--------------------- 266 (409)
.|+...+.. -+. ..++ ..+. .+...+.
T Consensus 160 ~Al~rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~ 239 (510)
T KOG4211|consen 160 IALGRHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRY 239 (510)
T ss_pred HHHHHHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccC
Confidence 998764421 000 0000 0000 0000000
Q ss_pred --------------------CC---C----------CCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCC
Q 015292 267 --------------------VD---S----------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG 313 (409)
Q Consensus 267 --------------------~~---~----------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~ 313 (409)
.. . .....+..++.++||+..+..+|..+|+..-.+ .|.|-...++
T Consensus 240 ~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dG 318 (510)
T KOG4211|consen 240 PSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDG 318 (510)
T ss_pred ccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCC
Confidence 00 0 000113778889999999999999999987554 7777777777
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 314 QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 314 ~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
+. .|-|+|+|.|.++|..|+.. ++..+..+-|.+....
T Consensus 319 r~-TGEAdveF~t~edav~Amsk-d~anm~hrYVElFln~ 356 (510)
T KOG4211|consen 319 RA-TGEADVEFATGEDAVGAMGK-DGANMGHRYVELFLNG 356 (510)
T ss_pred cc-CCcceeecccchhhHhhhcc-CCcccCcceeeecccC
Confidence 76 69999999999999999985 7888888888887663
No 30
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.93 E-value=2.5e-25 Score=185.47 Aligned_cols=150 Identities=25% Similarity=0.495 Sum_probs=137.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecccc
Q 015292 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (409)
Q Consensus 102 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 181 (409)
..|||+|||..+++.+|+.+|.+||+|..|.|+++ |+||..++...|..||..||+-.|+|..|.|+.++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 36999999999999999999999999999999976 9999999999999999999999999999999876643
Q ss_pred cccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcceec
Q 015292 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (409)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (409)
.+
T Consensus 75 sk------------------------------------------------------------------------------ 76 (346)
T KOG0109|consen 75 SK------------------------------------------------------------------------------ 76 (346)
T ss_pred CC------------------------------------------------------------------------------
Confidence 21
Q ss_pred CCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCce
Q 015292 262 ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~ 341 (409)
.+++|+|+||.+.++.++|+..|.+||.|..+.|++ +|+||+|.-.++|..|++.|+|+.
T Consensus 77 ------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 77 ------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred ------------CccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccc
Confidence 126899999999999999999999999999999985 799999999999999999999999
Q ss_pred ecCeEEEEEecCCCCc
Q 015292 342 LDGQALECSLAKPQAD 357 (409)
Q Consensus 342 ~~g~~l~v~~a~~~~~ 357 (409)
|.|++++|.++...-.
T Consensus 137 ~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 137 FQGKRMHVQLSTSRLR 152 (346)
T ss_pred cccceeeeeeeccccc
Confidence 9999999999876544
No 31
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=3.6e-25 Score=182.22 Aligned_cols=264 Identities=18% Similarity=0.284 Sum_probs=170.9
Q ss_pred hcCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCc-cCC--c
Q 015292 95 LALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE-FKG--K 171 (409)
Q Consensus 95 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~-~~g--~ 171 (409)
++.+.+.+.|||+-|...-.+++++.+|..||.|.+|.+.+... |.+||+|||.|.+..+|..||..||+.. +.| .
T Consensus 13 esrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASS 91 (371)
T KOG0146|consen 13 ESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASS 91 (371)
T ss_pred ccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCcc
Confidence 34455678999999999999999999999999999999999865 9999999999999999999999999876 444 6
Q ss_pred eEEEeecccccc---------------------------------------cc----cCCCCCCCChH----HHHHHHHh
Q 015292 172 KIRCSTSQAKYR---------------------------------------LF----IGNIPRNWGSE----DLQKVVSE 204 (409)
Q Consensus 172 ~l~v~~~~~~~~---------------------------------------l~----v~~l~~~~~~~----~l~~~f~~ 204 (409)
.|.|+++...+. +. ...|.+-++.. .+...++-
T Consensus 92 SLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~a 171 (371)
T KOG0146|consen 92 SLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNA 171 (371)
T ss_pred ceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhh
Confidence 788888864310 00 01122211111 11112222
Q ss_pred hCCc---eeEEEEeecCCC------CCCC-----ccE-EEEEeCCHHHHHHHHHHhcCCCccCCCC--------------
Q 015292 205 VGPG---VTGVELVKDMKN------SSNN-----RGF-AFIEYHNHKCAEYSRQKMTNPNFKLGTN-------------- 255 (409)
Q Consensus 205 ~g~~---v~~~~~~~~~~~------~~~~-----~g~-~fv~f~~~~~a~~a~~~~~~~~~~~~~~-------------- 255 (409)
.|-. |....-...++. .+.+ .+| +...+.+...+..++-...-..+.....
T Consensus 172 ngl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~ 251 (371)
T KOG0146|consen 172 NGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQ 251 (371)
T ss_pred cccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHH
Confidence 1210 111000000000 0000 111 1111222222222211111000000000
Q ss_pred -----------CcceecCCCCC---CCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEE
Q 015292 256 -----------APTVSWADPRN---VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGF 321 (409)
Q Consensus 256 -----------~~~~~~~~~~~---~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~af 321 (409)
.+...+..+.. ......+.+++|||..||....+.+|.+.|-+||.|.+.+++.|+.++.||+|+|
T Consensus 252 ~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGF 331 (371)
T KOG0146|consen 252 QYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGF 331 (371)
T ss_pred HHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceee
Confidence 00000000000 0012345579999999999999999999999999999999999999999999999
Q ss_pred EEeCCHHHHHHHHHHhCCceecCeEEEEEecCCCCccC
Q 015292 322 VHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359 (409)
Q Consensus 322 V~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 359 (409)
|.|+|+.+|+.||..|||+.|+-++|+|.+.+|+...+
T Consensus 332 VSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 332 VSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred EecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 99999999999999999999999999999999987644
No 32
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.92 E-value=2.5e-24 Score=212.48 Aligned_cols=169 Identities=22% Similarity=0.413 Sum_probs=147.9
Q ss_pred ccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcceecC
Q 015292 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA 262 (409)
Q Consensus 183 ~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~ 262 (409)
+|||+|||.++|+++|.++|+.+|+ |.+|+++++ ..+++++|||||.|.+.++|.+|+..++... +.++.+++.|+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~-v~~v~v~~d-~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~--i~gk~i~i~~s 77 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGP-VLSVRVCRD-SVTRRSLGYGYVNFQNPADAERALETMNFKR--LGGKPIRIMWS 77 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHhCCCE--ECCeeEEeecc
Confidence 6899999999999999999999999 999999999 6778999999999999999999999998753 56888889887
Q ss_pred CCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCcee
Q 015292 263 DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342 (409)
Q Consensus 263 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~ 342 (409)
..... .......+|||+|||.++++++|+++|+.||.|..|+|+.+..+. ++|||||+|.+.++|.+|+..|||..+
T Consensus 78 ~~~~~--~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~-skg~afV~F~~~e~A~~Ai~~lng~~~ 154 (562)
T TIGR01628 78 QRDPS--LRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGK-SRGYGFVHFEKEESAKAAIQKVNGMLL 154 (562)
T ss_pred ccccc--ccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCC-cccEEEEEECCHHHHHHHHHHhcccEe
Confidence 54322 122234689999999999999999999999999999999887554 489999999999999999999999999
Q ss_pred cCeEEEEEecCCCCcc
Q 015292 343 DGQALECSLAKPQADQ 358 (409)
Q Consensus 343 ~g~~l~v~~a~~~~~~ 358 (409)
.|+.|.|........+
T Consensus 155 ~~~~i~v~~~~~~~~~ 170 (562)
T TIGR01628 155 NDKEVYVGRFIKKHER 170 (562)
T ss_pred cCceEEEecccccccc
Confidence 9999999776654443
No 33
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.92 E-value=1.1e-23 Score=200.86 Aligned_cols=190 Identities=20% Similarity=0.333 Sum_probs=150.9
Q ss_pred HHHHHHHHHHhCCCccCCceEEEeec-----------ccccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCC
Q 015292 153 VELASKAIDKLNNTEFKGKKIRCSTS-----------QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221 (409)
Q Consensus 153 ~~~A~~a~~~l~~~~~~g~~l~v~~~-----------~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~ 221 (409)
.++|.+||..+++..+........+. ...++|||+|||+++++++|..+|+.+|. |..++++++ .+
T Consensus 19 ~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~-I~~vrl~~D--~s 95 (578)
T TIGR01648 19 DEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGP-IYELRLMMD--FS 95 (578)
T ss_pred cHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCC-EEEEEEEEC--CC
Confidence 57788888877877655433333332 12368999999999999999999999999 999999998 78
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcceecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCc
Q 015292 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGR 301 (409)
Q Consensus 222 ~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~ 301 (409)
+.++|||||+|.+.++|..|+..|++..+. .++.+.+.++. ..++|||+|||..+++++|.++|++++.
T Consensus 96 G~sRGfaFV~F~~~e~A~~Ai~~lng~~i~-~Gr~l~V~~S~----------~~~rLFVgNLP~~~TeeeL~eeFskv~e 164 (578)
T TIGR01648 96 GQNRGYAFVTFCGKEEAKEAVKLLNNYEIR-PGRLLGVCISV----------DNCRLFVGGIPKNKKREEILEEFSKVTE 164 (578)
T ss_pred CCccceEEEEeCCHHHHHHHHHHcCCCeec-CCccccccccc----------cCceeEeecCCcchhhHHHHHHhhcccC
Confidence 999999999999999999999999986543 24444444432 2378999999999999999999999864
Q ss_pred -eeEEee-CCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCC--ceecCeEEEEEecCCCC
Q 015292 302 -ITKVVV-PPAKPGQEKNRIGFVHFAERSSAMKALKNTEK--YELDGQALECSLAKPQA 356 (409)
Q Consensus 302 -v~~v~i-~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~--~~~~g~~l~v~~a~~~~ 356 (409)
+..+.+ ........++|||||+|.++++|..|++.|+. ..+.|+.|.|.|+.+..
T Consensus 165 gvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 165 GVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred CceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccc
Confidence 444433 33334455689999999999999999998864 45789999999998743
No 34
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.91 E-value=5.4e-24 Score=186.91 Aligned_cols=178 Identities=24% Similarity=0.474 Sum_probs=154.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
+.++|||++|+|+++++.|+.+|.+||+|..|.+++++.+++++||+||+|.+++...++|. ...+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 57899999999999999999999999999999999999999999999999999999999984 56778999999888776
Q ss_pred cccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcce
Q 015292 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (409)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (409)
++..- ...
T Consensus 84 ~r~~~------------------------------------~~~------------------------------------ 91 (311)
T KOG4205|consen 84 SREDQ------------------------------------TKV------------------------------------ 91 (311)
T ss_pred Ccccc------------------------------------ccc------------------------------------
Confidence 43210 000
Q ss_pred ecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCC
Q 015292 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (409)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~ 339 (409)
.....+++|||++||.++++.+|+++|.+||.|..+.++.+.....+|||+||.|.+.+++.+++. .+-
T Consensus 92 ----------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f 160 (311)
T KOG4205|consen 92 ----------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKF 160 (311)
T ss_pred ----------ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cce
Confidence 000123789999999999999999999999999999999999999999999999999999988887 578
Q ss_pred ceecCeEEEEEecCCCCccCCC
Q 015292 340 YELDGQALECSLAKPQADQKSA 361 (409)
Q Consensus 340 ~~~~g~~l~v~~a~~~~~~~~~ 361 (409)
+.|+|+.+.|..|.++......
T Consensus 161 ~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 161 HDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred eeecCceeeEeeccchhhcccc
Confidence 8999999999999998775543
No 35
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=8.6e-23 Score=180.12 Aligned_cols=163 Identities=20% Similarity=0.401 Sum_probs=142.2
Q ss_pred cccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcceec
Q 015292 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (409)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (409)
+.|||+.||.++.+++|.-+|...|+ |..++++++ +.+|.++|||||+|.+.+.|+.|++.||+..++ .|+.+.|..
T Consensus 84 ~EVfvGkIPrD~~EdeLvplfEkiG~-I~elRLMmD-~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc~ 160 (506)
T KOG0117|consen 84 CEVFVGKIPRDVFEDELVPLFEKIGK-IYELRLMMD-PFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVCV 160 (506)
T ss_pred ceEEecCCCccccchhhHHHHHhccc-eeeEEEeec-ccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEEE
Confidence 57999999999999999999999999 999999999 889999999999999999999999999998776 566666654
Q ss_pred CCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCc-eeEEeeCCCCC-CCCCCcEEEEEeCCHHHHHHHHHHhC-
Q 015292 262 ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGR-ITKVVVPPAKP-GQEKNRIGFVHFAERSSAMKALKNTE- 338 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~~~~~-~~~~~g~afV~F~~~e~A~~A~~~l~- 338 (409)
+.. .++|||+|||...++++|.+.|++.+. |.+|.|....+ ..++||||||+|.++..|..|.+.|-
T Consensus 161 Sva----------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 161 SVA----------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred eee----------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 433 379999999999999999999999986 77777766553 44578999999999999999999875
Q ss_pred -CceecCeEEEEEecCCCCc
Q 015292 339 -KYELDGQALECSLAKPQAD 357 (409)
Q Consensus 339 -~~~~~g~~l~v~~a~~~~~ 357 (409)
...+-|+.+.|.||.+...
T Consensus 231 g~~klwgn~~tVdWAep~~e 250 (506)
T KOG0117|consen 231 GKIKLWGNAITVDWAEPEEE 250 (506)
T ss_pred CceeecCCcceeeccCcccC
Confidence 3556799999999998654
No 36
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.90 E-value=9.9e-23 Score=199.41 Aligned_cols=167 Identities=17% Similarity=0.277 Sum_probs=133.3
Q ss_pred cccccccCCCCCCCChHHHHHHHHhhC-----------CceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 015292 180 AKYRLFIGNIPRNWGSEDLQKVVSEVG-----------PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248 (409)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g-----------~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 248 (409)
..++|||+|||+.+++++|..+|..++ ..|..+.+ ...++||||+|.+.+.|..|+ .|++.
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-------~~~kg~afVeF~~~e~A~~Al-~l~g~ 245 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-------NKEKNFAFLEFRTVEEATFAM-ALDSI 245 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-------CCCCCEEEEEeCCHHHHhhhh-cCCCe
Confidence 457899999999999999999999862 22333333 345899999999999999999 47764
Q ss_pred CccCCCCCcceecCCCCCC-------------------------CCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCcee
Q 015292 249 NFKLGTNAPTVSWADPRNV-------------------------DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT 303 (409)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~ 303 (409)
.+.+..+.+.+...... ........++|||+|||+.+++++|+++|+.||.|.
T Consensus 246 --~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~ 323 (509)
T TIGR01642 246 --IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLK 323 (509)
T ss_pred --EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee
Confidence 34455555543211100 000122357999999999999999999999999999
Q ss_pred EEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCCC
Q 015292 304 KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (409)
Q Consensus 304 ~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 356 (409)
.+.|+++..++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++....
T Consensus 324 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 324 AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 99999998888889999999999999999999999999999999999997543
No 37
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.89 E-value=2.3e-22 Score=187.32 Aligned_cols=222 Identities=27% Similarity=0.396 Sum_probs=176.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
....+|||+|||+.+++++|+.+| |||.|..++.|.+|...+++..+.||-|+|...
T Consensus 225 ~etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~ 281 (725)
T KOG0110|consen 225 SETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPS 281 (725)
T ss_pred HhhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeeecCc
Confidence 356789999999999999999998 899999999999999999999999999998554
Q ss_pred ccc-----------------------------------------------------------------------------
Q 015292 179 QAK----------------------------------------------------------------------------- 181 (409)
Q Consensus 179 ~~~----------------------------------------------------------------------------- 181 (409)
...
T Consensus 282 ~~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~ 361 (725)
T KOG0110|consen 282 KEKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVV 361 (725)
T ss_pred chhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhc
Confidence 211
Q ss_pred ------------------------cccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHH
Q 015292 182 ------------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKC 237 (409)
Q Consensus 182 ------------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~ 237 (409)
..++++|||..+..+.|..+|..||+ |..+.+. . ...-++|.|.+..+
T Consensus 362 ~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~-i~rvllp-~------~G~~aiv~fl~p~e 433 (725)
T KOG0110|consen 362 QEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGE-IGRVLLP-P------GGTGAIVEFLNPLE 433 (725)
T ss_pred hhhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccc-cceeecC-c------ccceeeeeecCccc
Confidence 34789999999999999999999999 7766322 1 12348999999999
Q ss_pred HHHHHHHhcCCCccCCCCCcceecCCCCCCC---------------------------C------CC-------------
Q 015292 238 AEYSRQKMTNPNFKLGTNAPTVSWADPRNVD---------------------------S------SG------------- 271 (409)
Q Consensus 238 a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~------~~------------- 271 (409)
|..|+..|....+. ...+.+.|+...... . ..
T Consensus 434 Ar~Afrklaysr~k--~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~ 511 (725)
T KOG0110|consen 434 ARKAFRKLAYSRFK--SAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAED 511 (725)
T ss_pred hHHHHHHhchhhhc--cCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhc
Confidence 99999988764332 111112221110000 0 00
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCC---CCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQ---EKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~---~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~ 348 (409)
....++|||.||+++++.++|..+|.+.|.|..+.|...++.. .|.|||||+|.+.++|++|++.|+|+.|+|+.|.
T Consensus 512 ~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~ 591 (725)
T KOG0110|consen 512 EETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLE 591 (725)
T ss_pred cccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEE
Confidence 0012349999999999999999999999999999998776553 3459999999999999999999999999999999
Q ss_pred EEecC
Q 015292 349 CSLAK 353 (409)
Q Consensus 349 v~~a~ 353 (409)
|.++.
T Consensus 592 lk~S~ 596 (725)
T KOG0110|consen 592 LKISE 596 (725)
T ss_pred EEecc
Confidence 99998
No 38
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.87 E-value=3.8e-21 Score=167.83 Aligned_cols=244 Identities=23% Similarity=0.315 Sum_probs=191.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCC--ccCCceEEEe
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT--EFKGKKIRCS 176 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~--~~~g~~l~v~ 176 (409)
..++.|.++|||+++++.+|..++.+||.|..+.+.+. +..||++|.+.++|...+...... .+.|+.|-|.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG------knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG------KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeecc------chhhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 36789999999999999999999999999999988775 338999999999998855433332 3667777776
Q ss_pred ecccc----------------------------------------------cccccCCCCCCCChHHHHHHHHhhCCcee
Q 015292 177 TSQAK----------------------------------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210 (409)
Q Consensus 177 ~~~~~----------------------------------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~v~ 210 (409)
++.-. -+++|.++-..++-+-|..+|+.||. |.
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~-Vl 178 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF-VL 178 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce-eE
Confidence 65210 14677888999999999999999999 54
Q ss_pred EEEEeecCCCCCCCccE-EEEEeCCHHHHHHHHHHhcCCCccCCCCCcceecCCCCC-----------------CCCC--
Q 015292 211 GVELVKDMKNSSNNRGF-AFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN-----------------VDSS-- 270 (409)
Q Consensus 211 ~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~-- 270 (409)
.|.... ++.+| |.|.|.+...|..|..+|.+..+..+...+++.++.-.. .+..
T Consensus 179 KIiTF~------Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~ 252 (492)
T KOG1190|consen 179 KIITFT------KNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDG 252 (492)
T ss_pred EEEEEe------cccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCcc
Confidence 443322 12344 889999999999999999998887777666666543110 0000
Q ss_pred --------------------------------------CCc--cceEEEEcCCC-CCCCHHHHHHHHhhcCceeEEeeCC
Q 015292 271 --------------------------------------GAS--QVKAVYVKNLP-RNVTQDQLKKLFEHHGRITKVVVPP 309 (409)
Q Consensus 271 --------------------------------------~~~--~~~~l~V~nLp-~~~t~~~L~~~F~~~G~v~~v~i~~ 309 (409)
... ....|.|.||- ..+|.+.|..+|+-||.|.+|+|+.
T Consensus 253 ~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~ 332 (492)
T KOG1190|consen 253 QPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILY 332 (492)
T ss_pred ccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeee
Confidence 000 13678888885 6789999999999999999999999
Q ss_pred CCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCCCccCC
Q 015292 310 AKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360 (409)
Q Consensus 310 ~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~ 360 (409)
++ +--|+|+|.+...|.-|+..|+|..|.|++|+|.+++...-.-+
T Consensus 333 nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp 378 (492)
T KOG1190|consen 333 NK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLP 378 (492)
T ss_pred cC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCC
Confidence 87 45799999999999999999999999999999999987654433
No 39
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.85 E-value=8.6e-20 Score=148.53 Aligned_cols=206 Identities=19% Similarity=0.349 Sum_probs=151.0
Q ss_pred CeEEEcCCCCCCCHHHHHH----HHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 102 SEVYIGGIPHDASEHDLRD----FCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 102 ~~l~v~nLp~~~t~~~l~~----~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
.||||.||+..+..++|+. +|++||.|..|...+. .+.+|-|||.|.+.+.|..|+..|+|..+.|+.++|.|
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 4999999999999999988 9999999999988765 67899999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCc
Q 015292 178 SQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257 (409)
Q Consensus 178 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 257 (409)
+..+..++..--+..+ ..+......++... ... ...++..+. ..
T Consensus 87 A~s~sdii~~~~~~~v----------~~~~k~~~~~~~~~-~~~---------------------~~~ng~~~~----~~ 130 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFV----------EKEKKINGEILARI-KQP---------------------LDTNGHFYN----MN 130 (221)
T ss_pred ccCccchhhccCceec----------cccCcccccccccc-CCc---------------------ccccccccc----cc
Confidence 9987665443211000 00000000000000 000 000000000 00
Q ss_pred ceecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHh
Q 015292 258 TVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (409)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l 337 (409)
......+. ......+...||+.|||..++.+.|..+|..|.....|+++... ++.|||+|.+...|..|...|
T Consensus 131 ~~~~p~p~--~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~l 203 (221)
T KOG4206|consen 131 RMNLPPPF--LAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQAL 203 (221)
T ss_pred cccCCCCc--cccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhh
Confidence 00000011 12335566899999999999999999999999999999999876 689999999999999999999
Q ss_pred CCceec-CeEEEEEecC
Q 015292 338 EKYELD-GQALECSLAK 353 (409)
Q Consensus 338 ~~~~~~-g~~l~v~~a~ 353 (409)
++..|. ...+.|.+++
T Consensus 204 q~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 204 QGFKITKKNTMQITFAK 220 (221)
T ss_pred ccceeccCceEEecccC
Confidence 999987 8888888875
No 40
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=7.2e-21 Score=163.68 Aligned_cols=169 Identities=21% Similarity=0.450 Sum_probs=149.0
Q ss_pred cccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcceec
Q 015292 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (409)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (409)
+++||+.+.+...++.|+..|..||+ |.+|.+..| +.+++++||+||+|.-.+.|+.|+..||+. .++|+.++|..
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGP-IKSInMSWD-p~T~kHKgFAFVEYEvPEaAqLAlEqMNg~--mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNGQ--MLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCC-cceeecccc-cccccccceEEEEEeCcHHHHHHHHHhccc--cccCccccccC
Confidence 57999999999999999999999999 999999999 889999999999999999999999999986 66788888874
Q ss_pred CCCCCCCC-------CCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHH
Q 015292 262 ADPRNVDS-------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (409)
Q Consensus 262 ~~~~~~~~-------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~ 334 (409)
...-..-. .....-++|||..+.+++++.+|+.+|+.||+|..|.+-++..++..|||+||+|.+..+-..||
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 33222111 01122478999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceecCeEEEEEecCC
Q 015292 335 KNTEKYELDGQALECSLAKP 354 (409)
Q Consensus 335 ~~l~~~~~~g~~l~v~~a~~ 354 (409)
..||-+.++|..|+|-.+-.
T Consensus 270 asMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 270 ASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hhcchhhcccceEecccccC
Confidence 99999999999999976643
No 41
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.84 E-value=5.2e-20 Score=146.28 Aligned_cols=85 Identities=19% Similarity=0.375 Sum_probs=79.4
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
..+++|||+|||+.+++++|+++|++||.|.+|+|+.+..+..++|||||+|.+.++|.+|+..||+..|+|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 34578999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred CCCCc
Q 015292 353 KPQAD 357 (409)
Q Consensus 353 ~~~~~ 357 (409)
.++..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 86543
No 42
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=4.9e-18 Score=132.69 Aligned_cols=173 Identities=19% Similarity=0.340 Sum_probs=131.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
..+++|||+|||.++.+.+|.++|.+||.|..|.|... -....||||+|.++.+|..||..-++-.+.|++|+|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45789999999999999999999999999999988654 335789999999999999999999999999999999987
Q ss_pred ccccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcc
Q 015292 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (409)
Q Consensus 179 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (409)
.....- ....| .+..+++.
T Consensus 81 rggr~s-------------------------------------~~~~G----------------------~y~gggrg-- 99 (241)
T KOG0105|consen 81 RGGRSS-------------------------------------SDRRG----------------------SYSGGGRG-- 99 (241)
T ss_pred cCCCcc-------------------------------------ccccc----------------------ccCCCCCC--
Confidence 642210 00000 00000000
Q ss_pred eecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 015292 259 VSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (409)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~ 338 (409)
.+..-...-.........|.|.+||++.+|++|++...+-|.|....+.++ |++.|+|...++.+-|+..|.
T Consensus 100 -Ggg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 100 -GGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred -CCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhc
Confidence 000000000011122368999999999999999999999999999999886 689999999999999999998
Q ss_pred Cceec
Q 015292 339 KYELD 343 (409)
Q Consensus 339 ~~~~~ 343 (409)
...+.
T Consensus 172 ~~~~~ 176 (241)
T KOG0105|consen 172 DQKFR 176 (241)
T ss_pred ccccc
Confidence 76664
No 43
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.80 E-value=9.6e-18 Score=143.90 Aligned_cols=205 Identities=23% Similarity=0.381 Sum_probs=145.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCee--------EEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccC
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT--------EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~ 169 (409)
+.-.+.|||.|||.++|.+++.++|++||.|. .|+|.++.. |..+|-|.+.|.-.+++..|+..|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 44567799999999999999999999999875 489999876 999999999999999999999999999999
Q ss_pred CceEEEeecccccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCC
Q 015292 170 GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPN 249 (409)
Q Consensus 170 g~~l~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 249 (409)
|+.|+|..++ |..-|. ...++..++-+ ..... +..+....
T Consensus 210 g~~~rVerAk----------------------fq~Kge----------~~~~~k~k~k~----~~~kk----~~k~q~k~ 249 (382)
T KOG1548|consen 210 GKKLRVERAK----------------------FQMKGE----------YDASKKEKGKC----KDKKK----LKKQQQKL 249 (382)
T ss_pred CcEEEEehhh----------------------hhhccC----------cCccccccccc----ccHHH----HHHHHHhh
Confidence 9999999775 222221 00000000000 00000 11111110
Q ss_pred ccCCCCCcceecCCCCCCCCCCCccceEEEEcCCCC----CCC-------HHHHHHHHhhcCceeEEeeCCCCCCCCCCc
Q 015292 250 FKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPR----NVT-------QDQLKKLFEHHGRITKVVVPPAKPGQEKNR 318 (409)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~----~~t-------~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g 318 (409)
..|.... ...+.....++|.++||=. ..+ .++|++-+++||.|.+|.|.-.. +.|
T Consensus 250 ---------~dw~pd~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h----PdG 315 (382)
T KOG1548|consen 250 ---------LDWRPDR-DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH----PDG 315 (382)
T ss_pred ---------cccCCCc-cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC----CCc
Confidence 0111111 1122233347899999832 223 36677889999999999997544 358
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCCCc
Q 015292 319 IGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQAD 357 (409)
Q Consensus 319 ~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 357 (409)
.+.|.|.+.++|..||+.|+|+.|+||.|..++......
T Consensus 316 vvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~ 354 (382)
T KOG1548|consen 316 VVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTK 354 (382)
T ss_pred eeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcce
Confidence 999999999999999999999999999999988765543
No 44
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.79 E-value=1.9e-19 Score=163.64 Aligned_cols=171 Identities=25% Similarity=0.442 Sum_probs=141.4
Q ss_pred cccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcceec
Q 015292 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (409)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (409)
+++|+-.|+...+..+|.++|+.+|. |..++++.+ +.++.++|.+||+|.+......|+ .|.+. .+.+..+.++.
T Consensus 180 Rtvf~~qla~r~~pRdL~efFs~~gk-VrdVriI~D-r~s~rskgi~Yvef~D~~sVp~ai-aLsGq--rllg~pv~vq~ 254 (549)
T KOG0147|consen 180 RTVFCMQLARRNPPRDLEEFFSIVGK-VRDVRIIGD-RNSRRSKGIAYVEFCDEQSVPLAI-ALSGQ--RLLGVPVIVQL 254 (549)
T ss_pred HHHHHHHHhhcCCchhHHHHHHhhcC-cceeEeecc-ccchhhcceeEEEEecccchhhHh-hhcCC--cccCceeEecc
Confidence 57888888889999999999999999 999999999 889999999999999988888777 45554 34455555544
Q ss_pred CCCCCCC----------CCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHH
Q 015292 262 ADPRNVD----------SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331 (409)
Q Consensus 262 ~~~~~~~----------~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~ 331 (409)
....... .....+-..|||+||.+++++.+|+.+|++||.|..|.+.++..++.++|||||+|.+.++|.
T Consensus 255 sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar 334 (549)
T KOG0147|consen 255 SEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDAR 334 (549)
T ss_pred cHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHH
Confidence 3321111 011122234999999999999999999999999999999999988888999999999999999
Q ss_pred HHHHHhCCceecCeEEEEEecCCCCc
Q 015292 332 KALKNTEKYELDGQALECSLAKPQAD 357 (409)
Q Consensus 332 ~A~~~l~~~~~~g~~l~v~~a~~~~~ 357 (409)
+|+..|||+.|.|+.|+|........
T Consensus 335 ~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 335 KALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred HHHHHhccceecCceEEEEEeeeecc
Confidence 99999999999999999988765443
No 45
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=3.8e-18 Score=157.44 Aligned_cols=244 Identities=20% Similarity=0.422 Sum_probs=190.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc-----------C-CeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSI-----------G-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~-----------G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~ 167 (409)
..+.++|+++|+.++++.+..+|..- | .+..+.|... +.|||++|.+.+.|..|+ .+++..
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~------~nfa~ie~~s~~~at~~~-~~~~~~ 246 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE------KNFAFIEFRSISEATEAM-ALDGII 246 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc------ccceeEEecCCCchhhhh-cccchh
Confidence 45679999999999999999999764 3 3777777444 779999999999999999 588888
Q ss_pred cCCceEEEeeccc-----------------------------ccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecC
Q 015292 168 FKGKKIRCSTSQA-----------------------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218 (409)
Q Consensus 168 ~~g~~l~v~~~~~-----------------------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~ 218 (409)
+.|+.+++..... ...+++++||...++..+.++...||+ +....++.+
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~-lk~f~lv~d- 324 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGP-LKAFRLVKD- 324 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhccc-chhheeecc-
Confidence 8998887754321 256899999999999999999999999 999999999
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcceecCCCCCC--------------------CCCCCccceEE
Q 015292 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNV--------------------DSSGASQVKAV 278 (409)
Q Consensus 219 ~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~l 278 (409)
..++.+++|+|.+|.+......|+..+++. .+++..+.+..+-.... ......++..|
T Consensus 325 ~~~g~skg~af~ey~dpsvtd~A~agLnGm--~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl 402 (500)
T KOG0120|consen 325 SATGNSKGFAFCEYCDPSVTDQAIAGLNGM--QLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVL 402 (500)
T ss_pred cccccccceeeeeeeCCcchhhhhcccchh--hhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhh
Confidence 667999999999999999999999999875 33444444443322211 12333445666
Q ss_pred EEcCCCC--CC-CH-------HHHHHHHhhcCceeEEeeCCC-CCC--CCCCcEEEEEeCCHHHHHHHHHHhCCceecCe
Q 015292 279 YVKNLPR--NV-TQ-------DQLKKLFEHHGRITKVVVPPA-KPG--QEKNRIGFVHFAERSSAMKALKNTEKYELDGQ 345 (409)
Q Consensus 279 ~V~nLp~--~~-t~-------~~L~~~F~~~G~v~~v~i~~~-~~~--~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~ 345 (409)
.+.|+-. .+ .+ ++++.-|++||.|..|.|++. ... ....|..||+|.+.+++++|+..|+|+.|.+|
T Consensus 403 ~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nR 482 (500)
T KOG0120|consen 403 CLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANR 482 (500)
T ss_pred hhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCc
Confidence 6666621 11 11 555677889999999999988 322 22357889999999999999999999999999
Q ss_pred EEEEEecCC
Q 015292 346 ALECSLAKP 354 (409)
Q Consensus 346 ~l~v~~a~~ 354 (409)
.|...|-..
T Consensus 483 tVvtsYyde 491 (500)
T KOG0120|consen 483 TVVASYYDE 491 (500)
T ss_pred EEEEEecCH
Confidence 999988654
No 46
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.75 E-value=7.5e-18 Score=133.95 Aligned_cols=82 Identities=24% Similarity=0.627 Sum_probs=78.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
.+++|||+|||+++|+++|+++|++||.|.+|+|+.+..+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred cc
Q 015292 180 AK 181 (409)
Q Consensus 180 ~~ 181 (409)
.+
T Consensus 113 ~~ 114 (144)
T PLN03134 113 DR 114 (144)
T ss_pred cC
Confidence 53
No 47
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.74 E-value=2.8e-16 Score=136.08 Aligned_cols=245 Identities=19% Similarity=0.254 Sum_probs=198.7
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHh--CCCccCCceE
Q 015292 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL--NNTEFKGKKI 173 (409)
Q Consensus 96 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l--~~~~~~g~~l 173 (409)
..+..+-.|.|++|-..+++.+|.+.++.||+|..|..+.. +..|.|+|.+.+.|..|+... +...+.|+..
T Consensus 26 hk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~A 99 (494)
T KOG1456|consen 26 HKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQA 99 (494)
T ss_pred CCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchh
Confidence 34566778999999999999999999999999999988765 668999999999999998532 3344677776
Q ss_pred EEeecccc-------------cc--cccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHH
Q 015292 174 RCSTSQAK-------------YR--LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCA 238 (409)
Q Consensus 174 ~v~~~~~~-------------~~--l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a 238 (409)
.+.++.+. .. +-|-|--..+|.+-|..++...|. |..|.|++. ..-.|.|+|.+.+.|
T Consensus 100 l~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~Gk-VlRIvIfkk------ngVQAmVEFdsv~~A 172 (494)
T KOG1456|consen 100 LFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGK-VLRIVIFKK------NGVQAMVEFDSVEVA 172 (494)
T ss_pred hcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCc-eEEEEEEec------cceeeEEeechhHHH
Confidence 66666322 12 235566678899999999999999 888887764 345799999999999
Q ss_pred HHHHHHhcCCCccCCCCCcceecCCCCCCCC-------------------------------------------------
Q 015292 239 EYSRQKMTNPNFKLGTNAPTVSWADPRNVDS------------------------------------------------- 269 (409)
Q Consensus 239 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 269 (409)
++|.++||+..+..+..++++.++.|.....
T Consensus 173 qrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y 252 (494)
T KOG1456|consen 173 QRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGY 252 (494)
T ss_pred HHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCC
Confidence 9999999998888777777777776532000
Q ss_pred -----------------------------CCCccceEEEEcCCCC-CCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcE
Q 015292 270 -----------------------------SGASQVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRI 319 (409)
Q Consensus 270 -----------------------------~~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~ 319 (409)
....++..+.|.+|.. .++.+.|..+|..||.|.+|++++.+ .|.
T Consensus 253 ~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gt 327 (494)
T KOG1456|consen 253 YSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGT 327 (494)
T ss_pred cccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cce
Confidence 0111258899999985 45889999999999999999999877 689
Q ss_pred EEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCCCcc
Q 015292 320 GFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQ 358 (409)
Q Consensus 320 afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 358 (409)
|.|++.+..+.++|+..||+..+.|.+|.|.+++...-.
T Consensus 328 amVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~ 366 (494)
T KOG1456|consen 328 AMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVS 366 (494)
T ss_pred eEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccc
Confidence 999999999999999999999999999999998876543
No 48
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.74 E-value=1.1e-16 Score=138.94 Aligned_cols=253 Identities=15% Similarity=0.210 Sum_probs=185.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
.....|..++|||..+..+|..+|+-.-...-.+.++...-|+..|.+.|.|.+++.-..|++ -+.+.+.++.|.|..+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 345678999999999999999999875433333333433448889999999999999999996 5888899999999766
Q ss_pred ccc----------------------cccccCCCCCCCChHHHHHHHHhhCC---ceeEEEEeecCCCCCCCccEEEEEeC
Q 015292 179 QAK----------------------YRLFIGNIPRNWGSEDLQKVVSEVGP---GVTGVELVKDMKNSSNNRGFAFIEYH 233 (409)
Q Consensus 179 ~~~----------------------~~l~v~~l~~~~~~~~l~~~f~~~g~---~v~~~~~~~~~~~~~~~~g~~fv~f~ 233 (409)
... --+.+++||++++..++..+|...-+ ....+-++.. ..++..|-|||.|.
T Consensus 137 ~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r--pdgrpTGdAFvlfa 214 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR--PDGRPTGDAFVLFA 214 (508)
T ss_pred CchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC--CCCCcccceEEEec
Confidence 432 23667899999999999999974322 2455555554 78899999999999
Q ss_pred CHHHHHHHHHHhcCC---Cc----------------------cCCCCCcceecCCCCCCCCCCCccceEEEEcCCCCCCC
Q 015292 234 NHKCAEYSRQKMTNP---NF----------------------KLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVT 288 (409)
Q Consensus 234 ~~~~a~~a~~~~~~~---~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t 288 (409)
..+.|+.|+...... .+ .+.+...-.-...+.. -........+|.+++||+..+
T Consensus 215 ~ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~-~~p~~~~kdcvRLRGLPy~At 293 (508)
T KOG1365|consen 215 CEEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPAR-LVPPTRSKDCVRLRGLPYEAT 293 (508)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccc-cCCCCCCCCeeEecCCChhhh
Confidence 999999988754421 00 0000000000000000 001112257999999999999
Q ss_pred HHHHHHHHhhcCc-eeE--EeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCCC
Q 015292 289 QDQLKKLFEHHGR-ITK--VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (409)
Q Consensus 289 ~~~L~~~F~~~G~-v~~--v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 356 (409)
.++|..||..|-. |.. |.++.+..++. .|-|||+|.+.++|.+|....|+....+|.|.|.-+....
T Consensus 294 vEdIL~FlgdFa~~i~f~gVHmv~N~qGrP-SGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ee 363 (508)
T KOG1365|consen 294 VEDILDFLGDFATDIRFQGVHMVLNGQGRP-SGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEE 363 (508)
T ss_pred HHHHHHHHHHHhhhcccceeEEEEcCCCCc-ChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHH
Confidence 9999999999875 333 78888887776 5999999999999999999999888889999998876543
No 49
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.73 E-value=5.1e-16 Score=136.07 Aligned_cols=234 Identities=18% Similarity=0.211 Sum_probs=182.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccC--CceEEEeeccc
Q 015292 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK--GKKIRCSTSQA 180 (409)
Q Consensus 103 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~--g~~l~v~~~~~ 180 (409)
+++|.|+-+-+|-+-|..+|++||.|..|.-.... ..-.|.|+|.+...|..|...|+|..|. -+.|+|.++.-
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Kn----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKN----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEEecc----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 57899999999999999999999999877654432 1224899999999999999999998763 36778766520
Q ss_pred ---------------------------------------------------------------------ccccccCCC-C
Q 015292 181 ---------------------------------------------------------------------KYRLFIGNI-P 190 (409)
Q Consensus 181 ---------------------------------------------------------------------~~~l~v~~l-~ 190 (409)
...|.|.|| +
T Consensus 228 t~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~ 307 (492)
T KOG1190|consen 228 TDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNE 307 (492)
T ss_pred ccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCch
Confidence 012444555 3
Q ss_pred CCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcceecCCCCCCCC-
Q 015292 191 RNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS- 269 (409)
Q Consensus 191 ~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 269 (409)
..+|.+.|..+|.-||. |..|++..+ .+..|.|.|.+...|..|+..|.+.. +.++.+++.++......-
T Consensus 308 ~~VT~d~LftlFgvYGd-VqRVkil~n------kkd~ALIQmsd~~qAqLA~~hL~g~~--l~gk~lrvt~SKH~~vqlp 378 (492)
T KOG1190|consen 308 EAVTPDVLFTLFGVYGD-VQRVKILYN------KKDNALIQMSDGQQAQLAMEHLEGHK--LYGKKLRVTLSKHTNVQLP 378 (492)
T ss_pred hccchhHHHHHHhhhcc-eEEEEeeec------CCcceeeeecchhHHHHHHHHhhcce--ecCceEEEeeccCccccCC
Confidence 46789999999999999 999999887 23569999999999999999999863 445666665553221100
Q ss_pred ------------------------------CCCccceEEEEcCCCCCCCHHHHHHHHhhcCce-eEEeeCCCCCCCCCCc
Q 015292 270 ------------------------------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI-TKVVVPPAKPGQEKNR 318 (409)
Q Consensus 270 ------------------------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v-~~v~i~~~~~~~~~~g 318 (409)
...+++.+|+..|||.++++++|+..|..-|-. .-.++.... +.
T Consensus 379 ~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd-----~k 453 (492)
T KOG1190|consen 379 REGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKD-----RK 453 (492)
T ss_pred CCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCC-----cc
Confidence 123557899999999999999999999988765 444444322 57
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceecCe-EEEEEecCC
Q 015292 319 IGFVHFAERSSAMKALKNTEKYELDGQ-ALECSLAKP 354 (409)
Q Consensus 319 ~afV~F~~~e~A~~A~~~l~~~~~~g~-~l~v~~a~~ 354 (409)
+|++.+.+.++|..|+..||++.+++. .|+|+|++.
T Consensus 454 mal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 454 MALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred eeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 999999999999999999999999865 899999875
No 50
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.70 E-value=5.2e-16 Score=125.18 Aligned_cols=230 Identities=18% Similarity=0.223 Sum_probs=132.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeC-CCCCCceeeEEEEecCHHHHHHHHHHhCCCccC---CceE
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG-KDSSENKGFAFVTFRNVELASKAIDKLNNTEFK---GKKI 173 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~---g~~l 173 (409)
+..-+||||.+||.++...+|..+|..|---..+.|... +...-.+.+|||.|.+...|..|+..|||..|+ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 344689999999999999999999999866666655443 222235589999999999999999999999985 7899
Q ss_pred EEeecccccccccCCCCC--CCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCcc
Q 015292 174 RCSTSQAKYRLFIGNIPR--NWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK 251 (409)
Q Consensus 174 ~v~~~~~~~~l~v~~l~~--~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~ 251 (409)
+|.+++++.+.--..... .-.. -+. ..+..........+....+....+-.-.-. .| .++....+.
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~-al~----~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~---~a----~al~~~~~t 178 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSP-ALV----IDNRNKEQRKSADDQHDEGLSDPDELQEPG---NA----DALKENDTT 178 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCc-ccc----ccccChhhcccchhhccccccCccccCCcc---cc----ccCCCcccc
Confidence 999988765432211111 0000 000 000000000000000000000000000000 00 000000000
Q ss_pred C-CCCCcceecCCCCC-------CCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEE
Q 015292 252 L-GTNAPTVSWADPRN-------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVH 323 (409)
Q Consensus 252 ~-~~~~~~~~~~~~~~-------~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~ 323 (409)
- ..-....+|+.+.. .-.+....+.+|||-||..++|+++|+.+|+.|......+|... ++. ..|||+
T Consensus 179 ~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g~--~vaf~~ 254 (284)
T KOG1457|consen 179 KSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GGM--PVAFAD 254 (284)
T ss_pred chhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CCc--ceEeec
Confidence 0 00000011111110 01123344679999999999999999999999987766666432 222 589999
Q ss_pred eCCHHHHHHHHHHhCCceec
Q 015292 324 FAERSSAMKALKNTEKYELD 343 (409)
Q Consensus 324 F~~~e~A~~A~~~l~~~~~~ 343 (409)
|.+.+.|..|+..|+|..|.
T Consensus 255 ~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 255 FEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred HHHHHHHHHHHHHhhcceec
Confidence 99999999999999987763
No 51
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.69 E-value=8.8e-16 Score=138.15 Aligned_cols=163 Identities=17% Similarity=0.327 Sum_probs=127.0
Q ss_pred cccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcce--
Q 015292 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV-- 259 (409)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~-- 259 (409)
..|.+++|||++|+++|.++|+.++ |.++.+.+ .+++..|-|||+|.+.+++.+|++.-.. .++.+-+.|
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~--I~~~~~~r---~~Gr~sGeA~Ve~~seedv~~AlkkdR~---~mg~RYIEVf~ 82 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG--IENLEIPR---RNGRPSGEAYVEFTSEEDVEKALKKDRE---SMGHRYIEVFT 82 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc--eeEEEEec---cCCCcCcceEEEeechHHHHHHHHhhHH---HhCCceEEEEc
Confidence 3466789999999999999999988 77765554 4799999999999999999999876432 233333333
Q ss_pred ------ecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeE-EeeCCCCCCCCCCcEEEEEeCCHHHHHH
Q 015292 260 ------SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVVPPAKPGQEKNRIGFVHFAERSSAMK 332 (409)
Q Consensus 260 ------~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~~~~~~~~g~afV~F~~~e~A~~ 332 (409)
.|.-.+....+. .+...|.+++||+.||+++|.+||+..-.|.. |-++.+..++ +.|-|||+|++.+.|++
T Consensus 83 ~~~~e~d~~~~~~g~~s~-~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR-~tGEAfVqF~sqe~ae~ 160 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSS-ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGR-PTGEAFVQFESQESAEI 160 (510)
T ss_pred cCCccccccccCCCCCCC-CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCC-cccceEEEecCHHHHHH
Confidence 333222222221 35578999999999999999999998876666 6677777777 47999999999999999
Q ss_pred HHHHhCCceecCeEEEEEecCCC
Q 015292 333 ALKNTEKYELDGQALECSLAKPQ 355 (409)
Q Consensus 333 A~~~l~~~~~~g~~l~v~~a~~~ 355 (409)
|+.. |...|+.|.|.|..+...
T Consensus 161 Al~r-hre~iGhRYIEvF~Ss~~ 182 (510)
T KOG4211|consen 161 ALGR-HRENIGHRYIEVFRSSRA 182 (510)
T ss_pred HHHH-HHHhhccceEEeehhHHH
Confidence 9995 788899999999887643
No 52
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.67 E-value=5e-16 Score=126.86 Aligned_cols=81 Identities=27% Similarity=0.490 Sum_probs=75.3
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCC
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (409)
-++|||+||++.+..+.|+++|++||.|..+.|+.|+.+++|||||||+|.+.++|.+|+...| -.|+||+..|.+|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhhh
Confidence 3799999999999999999999999999999999999999999999999999999999999755 489999999999876
Q ss_pred CC
Q 015292 355 QA 356 (409)
Q Consensus 355 ~~ 356 (409)
..
T Consensus 91 g~ 92 (247)
T KOG0149|consen 91 GG 92 (247)
T ss_pred cC
Confidence 33
No 53
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.67 E-value=3.5e-16 Score=124.68 Aligned_cols=84 Identities=26% Similarity=0.470 Sum_probs=79.5
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
....|.|-||.+.++.++|+.+|++||.|-+|.|++++-+..++|||||.|....+|+.|+.+|+|..|+|+.|+|++|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCc
Q 015292 354 PQAD 357 (409)
Q Consensus 354 ~~~~ 357 (409)
-...
T Consensus 92 ygr~ 95 (256)
T KOG4207|consen 92 YGRP 95 (256)
T ss_pred cCCC
Confidence 6544
No 54
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.66 E-value=3.6e-16 Score=109.42 Aligned_cols=70 Identities=29% Similarity=0.563 Sum_probs=65.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015292 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (409)
Q Consensus 278 l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~ 348 (409)
|||+|||.++|+++|+++|++||.|..+.+..+ ..+.++|+|||+|.+.++|.+|+..|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 4455589999999999999999999999999999986
No 55
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.66 E-value=6.3e-16 Score=108.20 Aligned_cols=70 Identities=40% Similarity=0.840 Sum_probs=67.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 015292 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (409)
Q Consensus 104 l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 174 (409)
|||+|||+++|+++|+++|++||.|..+.+..+ .++.++++|||+|.+.++|.+|++.+++..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999997 5689999999999999999999999999999999985
No 56
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=3.4e-16 Score=128.24 Aligned_cols=82 Identities=29% Similarity=0.474 Sum_probs=79.4
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
...+|.|.||+.++++.+|+++|.+||.|.+|.|.+++.++.+||||||.|.+.++|.+||..|||+-++.-.|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 015292 354 PQ 355 (409)
Q Consensus 354 ~~ 355 (409)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 57
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.64 E-value=9.3e-16 Score=139.68 Aligned_cols=83 Identities=23% Similarity=0.342 Sum_probs=78.4
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
...++|||+|||+++|+++|+++|+.||.|..|+|+++..++.++|||||+|.+.++|.+||..||+..|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 44689999999999999999999999999999999999888888999999999999999999999999999999999998
Q ss_pred CCC
Q 015292 353 KPQ 355 (409)
Q Consensus 353 ~~~ 355 (409)
++.
T Consensus 185 ~p~ 187 (346)
T TIGR01659 185 RPG 187 (346)
T ss_pred ccc
Confidence 763
No 58
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=6.7e-16 Score=127.49 Aligned_cols=171 Identities=25% Similarity=0.409 Sum_probs=131.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecccc
Q 015292 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (409)
Q Consensus 102 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 181 (409)
..|||++||+.+.+.+|..||..||.|..|.+. .||+||+|.+.-+|..|+..+++..|.|-.+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 469999999999999999999999999999885 568999999999999999999999999988888776532
Q ss_pred cccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcceec
Q 015292 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (409)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (409)
..-. |. ...+ .+.. |
T Consensus 74 ~~~~--------------------g~-----------~~~g-------------------------------~r~~---~ 88 (216)
T KOG0106|consen 74 RRGR--------------------GR-----------PRGG-------------------------------DRRS---D 88 (216)
T ss_pred cccc--------------------CC-----------CCCC-------------------------------Cccc---h
Confidence 1100 00 0000 0000 0
Q ss_pred CCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCce
Q 015292 262 ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~ 341 (409)
... ........+.|+|.|++..+.+++|.+.|.++|.+....+. ++++||+|.+.++|.+|+..|++..
T Consensus 89 ~~~---~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~da~ra~~~l~~~~ 157 (216)
T KOG0106|consen 89 SRR---YRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQEDAKRALEKLDGKK 157 (216)
T ss_pred hhc---cCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeehhhhhhhhcchhccchh
Confidence 000 00111223789999999999999999999999999655551 5899999999999999999999999
Q ss_pred ecCeEEEEEecCCCC
Q 015292 342 LDGQALECSLAKPQA 356 (409)
Q Consensus 342 ~~g~~l~v~~a~~~~ 356 (409)
+.+++|.+.......
T Consensus 158 ~~~~~l~~~~~~~d~ 172 (216)
T KOG0106|consen 158 LNGRRISVEKNSRDR 172 (216)
T ss_pred hcCceeeecccCcch
Confidence 999999995554433
No 59
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=9.6e-16 Score=130.76 Aligned_cols=87 Identities=23% Similarity=0.373 Sum_probs=78.3
Q ss_pred CCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015292 269 SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (409)
Q Consensus 269 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~ 348 (409)
.+.....++|+|.|||+...+-||+.+|.+||+|.+|.|+.+..|. ||||||+|.+.++|.+|...|||..|.||+|.
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGS--KGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGS--KGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCC--CccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 3444556899999999999999999999999999999999987664 69999999999999999999999999999999
Q ss_pred EEecCCCCc
Q 015292 349 CSLAKPQAD 357 (409)
Q Consensus 349 v~~a~~~~~ 357 (409)
|..|...-.
T Consensus 168 Vn~ATarV~ 176 (376)
T KOG0125|consen 168 VNNATARVH 176 (376)
T ss_pred Eeccchhhc
Confidence 999976543
No 60
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=7.2e-16 Score=125.96 Aligned_cols=78 Identities=28% Similarity=0.658 Sum_probs=72.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
-+.|||++|+|.+..+.|+++|++||+|+.+.++.|+.+|++|||+||+|++.++|.+|++. .+-.|+||+..|.++.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 36799999999999999999999999999999999999999999999999999999999964 5667999999887664
No 61
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.5e-15 Score=124.51 Aligned_cols=82 Identities=29% Similarity=0.496 Sum_probs=78.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
+.++|.|.|||.++++.+|++||.+||.|.+|.|.+++.||.++|||||.|.+.++|.+||..|||.-+..-.|+|.++.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 015292 180 AK 181 (409)
Q Consensus 180 ~~ 181 (409)
+.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 64
No 62
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=1.3e-15 Score=111.84 Aligned_cols=82 Identities=23% Similarity=0.327 Sum_probs=77.3
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCC
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (409)
+++|||+||++.+++++|.++|+++|.|..|.+-.++....+-|||||+|.+.++|..|++-++|+.++.++|+|.|...
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~G 115 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAG 115 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecccc
Confidence 37999999999999999999999999999999999998888889999999999999999999999999999999999765
Q ss_pred CC
Q 015292 355 QA 356 (409)
Q Consensus 355 ~~ 356 (409)
=.
T Consensus 116 F~ 117 (153)
T KOG0121|consen 116 FV 117 (153)
T ss_pred ch
Confidence 33
No 63
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.62 E-value=3.5e-15 Score=104.27 Aligned_cols=70 Identities=44% Similarity=0.819 Sum_probs=65.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 015292 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (409)
Q Consensus 104 l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 174 (409)
|||+|||+++++++|+++|+.||.|..+++..++. +.++++|||+|.+.++|.+|+..+++..|.|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999977 89999999999999999999999998999999884
No 64
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.62 E-value=2.6e-15 Score=104.94 Aligned_cols=70 Identities=31% Similarity=0.565 Sum_probs=64.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015292 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (409)
Q Consensus 278 l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~ 348 (409)
|||+|||+++++++|+++|+.||.|..+.+..++. +.++|+|||+|.+.++|.+|+..+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999887 66689999999999999999999999999999985
No 65
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=8.2e-15 Score=103.49 Aligned_cols=81 Identities=23% Similarity=0.414 Sum_probs=74.3
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
-++.|||+|||+++|.+++.++|.+||.|..|+|-..+.+ +|.|||.|++..+|.+|+..|+|..+.++.|.|-+-.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 3578999999999999999999999999999999877665 6899999999999999999999999999999999887
Q ss_pred CCCc
Q 015292 354 PQAD 357 (409)
Q Consensus 354 ~~~~ 357 (409)
+...
T Consensus 94 ~~~~ 97 (124)
T KOG0114|consen 94 PEDA 97 (124)
T ss_pred HHHH
Confidence 6543
No 66
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.60 E-value=4.8e-15 Score=125.76 Aligned_cols=76 Identities=22% Similarity=0.340 Sum_probs=70.8
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCC
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (409)
++|||+|||+.+|+++|+++|+.||.|.+|+|++++. ++|||||+|.+.++|..||. |||..|.|+.|.|.++..-
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 7999999999999999999999999999999998864 26899999999999999996 9999999999999998653
No 67
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.59 E-value=1.8e-14 Score=130.71 Aligned_cols=169 Identities=28% Similarity=0.532 Sum_probs=123.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeeccc
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 180 (409)
.++|||+|||+++|+++|.++|..||.|..+.+..++.+|.++|||||.|.+.++|..|+..+++..|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999988999999999999999999999999999999999999988653
Q ss_pred --ccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcc
Q 015292 181 --KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (409)
Q Consensus 181 --~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (409)
........+ ... .....
T Consensus 195 ~~~~~~~~~~~-----------~~~----------------------------------------~~~~~---------- 213 (306)
T COG0724 195 ASQPRSELSNN-----------LDA----------------------------------------SFAKK---------- 213 (306)
T ss_pred ccccccccccc-----------cch----------------------------------------hhhcc----------
Confidence 000000000 000 00000
Q ss_pred eecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 015292 259 VSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (409)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~ 335 (409)
..............+++.|++..++...+...|..+|.+..+.+...........+.++.+.....+.....
T Consensus 214 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 214 -----LSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred -----ccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 000001122233789999999999999999999999999888887776555434444444444444444443
No 68
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=1.3e-14 Score=113.03 Aligned_cols=77 Identities=23% Similarity=0.389 Sum_probs=72.4
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCC
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (409)
++|||+||+..+++.+|..+|..||.|..|.|-+.+ .|||||+|.++.+|..|+..|+|..|.|..|+|.++...
T Consensus 11 ~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 11 TKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred ceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 789999999999999999999999999999998765 699999999999999999999999999999999999865
Q ss_pred Cc
Q 015292 356 AD 357 (409)
Q Consensus 356 ~~ 357 (409)
..
T Consensus 86 ~r 87 (195)
T KOG0107|consen 86 PR 87 (195)
T ss_pred cc
Confidence 44
No 69
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=1.2e-14 Score=113.82 Aligned_cols=80 Identities=25% Similarity=0.514 Sum_probs=71.1
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
..++|||+|||.++.+.+|.++|.+||.|..|.|.... +. ..||||+|.++.+|..||..-+|..++|+.|+|.|+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~-g~--ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP-GP--PPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC-CC--CCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 34799999999999999999999999999999885433 22 3799999999999999999999999999999999998
Q ss_pred CCC
Q 015292 354 PQA 356 (409)
Q Consensus 354 ~~~ 356 (409)
...
T Consensus 82 ggr 84 (241)
T KOG0105|consen 82 GGR 84 (241)
T ss_pred CCC
Confidence 654
No 70
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=4.2e-15 Score=109.23 Aligned_cols=82 Identities=17% Similarity=0.340 Sum_probs=77.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
...++||||+||++.+++++|.++|+++|+|..|.+-.++.+..+-|||||+|.+.++|..|+..+++..|..+.|+|.+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 015292 178 SQ 179 (409)
Q Consensus 178 ~~ 179 (409)
..
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 54
No 71
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=4.1e-14 Score=119.41 Aligned_cols=95 Identities=17% Similarity=0.352 Sum_probs=85.1
Q ss_pred CCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceec
Q 015292 264 PRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD 343 (409)
Q Consensus 264 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~ 343 (409)
|...+.....+-++|||.-|++++++..|+..|+.||.|..|+|+++..++.++|||||+|...-+..+|....+|..|+
T Consensus 90 P~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id 169 (335)
T KOG0113|consen 90 PNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID 169 (335)
T ss_pred CCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec
Confidence 33333444466699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCcc
Q 015292 344 GQALECSLAKPQADQ 358 (409)
Q Consensus 344 g~~l~v~~a~~~~~~ 358 (409)
|+.|.|.+-......
T Consensus 170 grri~VDvERgRTvk 184 (335)
T KOG0113|consen 170 GRRILVDVERGRTVK 184 (335)
T ss_pred CcEEEEEeccccccc
Confidence 999999998766553
No 72
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.57 E-value=1.4e-13 Score=119.55 Aligned_cols=163 Identities=16% Similarity=0.248 Sum_probs=135.2
Q ss_pred cccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcceec
Q 015292 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (409)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (409)
..+.|++|-..+++.+|.+.++.||+ |..+..+.. +..+.|+|.+.+.|..++.-.....+.+.+....+.+
T Consensus 32 pvvhvr~l~~~v~eadl~eal~~fG~-i~yvt~~P~-------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 32 PVVHVRGLHQGVVEADLVEALSNFGP-IAYVTCMPH-------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred ceEEEeccccccchhHHHHHHhcCCc-eEEEEeccc-------cceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 45789999999999999999999999 888887765 6679999999999999998888888888898888888
Q ss_pred CCCCCCCC---CCCccceEEE--EcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 015292 262 ADPRNVDS---SGASQVKAVY--VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (409)
Q Consensus 262 ~~~~~~~~---~~~~~~~~l~--V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~ 336 (409)
+....... ....+.+.|. |-|--+.+|.+.|..++.+.|.|.+|.|++.. + --|.|+|++.+.|++|.+.
T Consensus 104 Stsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn-g----VQAmVEFdsv~~AqrAk~a 178 (494)
T KOG1456|consen 104 STSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN-G----VQAMVEFDSVEVAQRAKAA 178 (494)
T ss_pred chhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc-c----eeeEEeechhHHHHHHHhh
Confidence 86554332 2223334444 45666889999999999999999999999863 2 2599999999999999999
Q ss_pred hCCcee--cCeEEEEEecCCCCc
Q 015292 337 TEKYEL--DGQALECSLAKPQAD 357 (409)
Q Consensus 337 l~~~~~--~g~~l~v~~a~~~~~ 357 (409)
|||..| +.++|+|.||+|.+-
T Consensus 179 lNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 179 LNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred cccccccccceeEEEEecCccee
Confidence 999887 458999999998643
No 73
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.57 E-value=1.4e-14 Score=122.96 Aligned_cols=76 Identities=18% Similarity=0.369 Sum_probs=70.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeeccc
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 180 (409)
.++|||+|||+.+|+++|+++|+.||.|.+|.|++++. ++|||||+|.++++|..|| .|++..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999998853 5799999999999999999 5999999999999998764
No 74
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=6.5e-16 Score=120.66 Aligned_cols=80 Identities=28% Similarity=0.592 Sum_probs=76.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
++.-|||+|||+.+|+.+|.-.|++||.|+.|.|++|+.||.++||||+.|.+..+...|+..|||..|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999997643
No 75
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=3.6e-14 Score=100.29 Aligned_cols=81 Identities=23% Similarity=0.418 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
|...+.|||+|||+++|.+++.++|.+||.|..|+|-..+. .+|.|||.|++..+|++|++.|+|..+.++.|.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 44578899999999999999999999999999999977654 599999999999999999999999999999999998
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
.++.
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 8754
No 76
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.3e-15 Score=119.03 Aligned_cols=105 Identities=18% Similarity=0.370 Sum_probs=86.6
Q ss_pred HHHHHhcCCCccCCCCCcceecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcE
Q 015292 240 YSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRI 319 (409)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~ 319 (409)
+.++.||...+.++... ..+|... ...+.-|||+|||+.+|+.+|..+|++||.|.+|.|++|+.++.|+||
T Consensus 8 k~i~~lne~Elq~g~~~-~~SWH~~-------YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGF 79 (219)
T KOG0126|consen 8 KNIQKLNERELQLGIAD-KKSWHQE-------YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGF 79 (219)
T ss_pred HHHHHhhHHhhcccccc-ccchhhh-------cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccce
Confidence 34555665555444333 4444332 223468999999999999999999999999999999999999999999
Q ss_pred EEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 320 GFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 320 afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
||+.|.+..+..-|+..|||..|.||.|+|.-.
T Consensus 80 aFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 80 AFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred EEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 999999999999999999999999999999643
No 77
>PLN03213 repressor of silencing 3; Provisional
Probab=99.53 E-value=2.9e-14 Score=128.03 Aligned_cols=77 Identities=21% Similarity=0.262 Sum_probs=70.8
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCH--HHHHHHHHHhCCceecCeEEEEEec
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER--SSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~--e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
+.+|||+||++.+++++|+.+|+.||.|.+|.|++. ++ ||||||+|.+. .++.+||..|||..+.|+.|+|..|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 478999999999999999999999999999999943 33 79999999987 6899999999999999999999999
Q ss_pred CCC
Q 015292 353 KPQ 355 (409)
Q Consensus 353 ~~~ 355 (409)
++.
T Consensus 86 KP~ 88 (759)
T PLN03213 86 KEH 88 (759)
T ss_pred cHH
Confidence 873
No 78
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.53 E-value=5.3e-14 Score=117.37 Aligned_cols=78 Identities=22% Similarity=0.374 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
+...+|||+||++.+|+++|++||+.||+|.+|+|+++ +..+++|||+|.++++|..|+ .|+|..|.++.|.|.++
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 35689999999999999999999999999999999998 455789999999999999999 69999999999999886
Q ss_pred cc
Q 015292 179 QA 180 (409)
Q Consensus 179 ~~ 180 (409)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 53
No 79
>PLN03213 repressor of silencing 3; Provisional
Probab=99.52 E-value=3.9e-14 Score=127.24 Aligned_cols=77 Identities=21% Similarity=0.476 Sum_probs=71.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCH--HHHHHHHHHhCCCccCCceEEEeec
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNV--ELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~--~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
..+||||||++++++++|+.+|..||.|.+|.|++ .+| ||||||+|.+. .++.+||..|||..|.|+.|+|..+
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 57899999999999999999999999999999994 467 99999999987 7899999999999999999999998
Q ss_pred ccc
Q 015292 179 QAK 181 (409)
Q Consensus 179 ~~~ 181 (409)
.+.
T Consensus 86 KP~ 88 (759)
T PLN03213 86 KEH 88 (759)
T ss_pred cHH
Confidence 765
No 80
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=3e-14 Score=121.78 Aligned_cols=82 Identities=29% Similarity=0.479 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|+|.|||+...+.||+.+|.+||+|.+|.|+.+. ..+|||+||+|.+.++|.+|.++|||..+.||+|.|..
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 3456889999999999999999999999999999999874 45899999999999999999999999999999999998
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+..+
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 8754
No 81
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=3.6e-14 Score=110.53 Aligned_cols=75 Identities=27% Similarity=0.498 Sum_probs=71.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeeccc
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 180 (409)
.+.|||+||+..+++.+|...|..||+|.+|+|-+. ..|||||+|.++.+|..|+..|+|..|.|..|+|+++..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 689999999999999999999999999999999886 489999999999999999999999999999999998864
No 82
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.3e-14 Score=116.82 Aligned_cols=84 Identities=31% Similarity=0.498 Sum_probs=80.3
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCC
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (409)
.++|||++|...+++..|...|-+||.|..|.|+.|..+++.||||||+|.-.++|.+||..||+..|.||.|+|.+|+|
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP 89 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcc
Q 015292 355 QADQ 358 (409)
Q Consensus 355 ~~~~ 358 (409)
..-.
T Consensus 90 ~kik 93 (298)
T KOG0111|consen 90 EKIK 93 (298)
T ss_pred cccc
Confidence 6543
No 83
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=5.9e-14 Score=118.49 Aligned_cols=80 Identities=19% Similarity=0.414 Sum_probs=76.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
+=+||||.-|++++++..|+..|..||+|..|+|+++..||+++|||||+|.+..+...|.+..+|..|.|+.|.|.+-.
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999998654
No 84
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.51 E-value=1.2e-13 Score=115.32 Aligned_cols=77 Identities=17% Similarity=0.139 Sum_probs=70.3
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCC
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (409)
+++|||+||++.+|+++|++||+.||.|.+|+|+++... +|||||+|.+.++|..|+. |+|..|.+++|.|..+..
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et---~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEY---ACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCc---ceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 489999999999999999999999999999999998533 4799999999999999996 999999999999988764
Q ss_pred C
Q 015292 355 Q 355 (409)
Q Consensus 355 ~ 355 (409)
-
T Consensus 81 y 81 (243)
T PLN03121 81 Y 81 (243)
T ss_pred c
Confidence 3
No 85
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.49 E-value=3.8e-14 Score=113.17 Aligned_cols=80 Identities=24% Similarity=0.465 Sum_probs=77.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
.-.+|.|-||.+.++.++|+.+|++||.|.+|.|..++.|+.++|||||.|....+|+.|+++|+|.+|.|+.|.|+.+.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998775
No 86
>smart00362 RRM_2 RNA recognition motif.
Probab=99.49 E-value=2.3e-13 Score=95.45 Aligned_cols=72 Identities=32% Similarity=0.577 Sum_probs=66.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015292 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (409)
Q Consensus 277 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~ 350 (409)
+|+|+|||..++.++|+++|.+||.|..+.+..+. +.++|+|||+|.+.++|.+|+..+++..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999999877 4457999999999999999999999999999999874
No 87
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=1.5e-13 Score=102.07 Aligned_cols=86 Identities=14% Similarity=0.204 Sum_probs=80.4
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
...+..|||.++...+++++|.+.|..||.|.+|.|-.++.++-.+|||+|+|.+..+|++|+..|||..|.|..|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 34568999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred cCCCCc
Q 015292 352 AKPQAD 357 (409)
Q Consensus 352 a~~~~~ 357 (409)
+-.+..
T Consensus 149 ~Fv~gp 154 (170)
T KOG0130|consen 149 CFVKGP 154 (170)
T ss_pred EEecCC
Confidence 876544
No 88
>smart00362 RRM_2 RNA recognition motif.
Probab=99.48 E-value=3.5e-13 Score=94.51 Aligned_cols=72 Identities=38% Similarity=0.719 Sum_probs=67.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe
Q 015292 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (409)
Q Consensus 103 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 176 (409)
+|||+|||..++.++|+++|.+||.|..+.+..+. +.++|+|||+|.+.++|.+|+..+++..+.|++|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 7789999999999999999999999999999998873
No 89
>smart00360 RRM RNA recognition motif.
Probab=99.45 E-value=4e-13 Score=93.83 Aligned_cols=71 Identities=35% Similarity=0.562 Sum_probs=66.4
Q ss_pred EcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015292 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (409)
Q Consensus 280 V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~ 350 (409)
|+|||..+++++|+.+|+.||.|..+.+..++.+..++|+|||+|.+.++|.+|+..|++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999888767778999999999999999999999999999999874
No 90
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.1e-13 Score=111.44 Aligned_cols=84 Identities=27% Similarity=0.558 Sum_probs=80.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
...+||||++|...+++.-|...|-+||.|..|.+..+..+++.||||||+|.-.++|..||..||+..|.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 015292 179 QAKY 182 (409)
Q Consensus 179 ~~~~ 182 (409)
.+.+
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 8754
No 91
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.44 E-value=2.7e-12 Score=113.86 Aligned_cols=168 Identities=23% Similarity=0.339 Sum_probs=136.8
Q ss_pred ccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCccee
Q 015292 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (409)
Q Consensus 181 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 260 (409)
.+.+||.|+|+++.|++|+++|....-.|..|.+..| ..+++++++.|+|+.++.+++|+..|+.. .+.++.+.+.
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D--~~GK~rGcavVEFk~~E~~qKa~E~lnk~--~~~GR~l~vK 119 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD--ESGKARGCAVVEFKDPENVQKALEKLNKY--EVNGRELVVK 119 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc--cCCCcCCceEEEeeCHHHHHHHHHHhhhc--cccCceEEEe
Confidence 4569999999999999999999987655999999998 89999999999999999999999999853 3344444433
Q ss_pred cCCCCC---------------------------------------------CCC--------------------------
Q 015292 261 WADPRN---------------------------------------------VDS-------------------------- 269 (409)
Q Consensus 261 ~~~~~~---------------------------------------------~~~-------------------------- 269 (409)
-..... ...
T Consensus 120 Ed~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl 199 (608)
T KOG4212|consen 120 EDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGL 199 (608)
T ss_pred ccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccc
Confidence 221100 000
Q ss_pred ----------CCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCC
Q 015292 270 ----------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (409)
Q Consensus 270 ----------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~ 339 (409)
-..+...++||.||.+.+....|++.|.-.|.|..|.+-.++.+.+ +||+.++|..+-+|..||..|++
T Consensus 200 ~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s-~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 200 SASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNS-RGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecccccc-CCeeEEEecchHHHHHHHHhhcc
Confidence 0011146899999999999999999999999999999999999955 89999999999999999999998
Q ss_pred ceecCeEEEEEecC
Q 015292 340 YELDGQALECSLAK 353 (409)
Q Consensus 340 ~~~~g~~l~v~~a~ 353 (409)
.-+..++..+.+.+
T Consensus 279 ~g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 279 QGLFDRRMTVRLDR 292 (608)
T ss_pred CCCccccceeeccc
Confidence 77778888887754
No 92
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.44 E-value=7.3e-13 Score=87.70 Aligned_cols=56 Identities=32% Similarity=0.510 Sum_probs=51.9
Q ss_pred HHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 292 LKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 292 L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
|+++|++||.|.++.+.... +++|||+|.+.++|..|+..|||..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998876 489999999999999999999999999999999986
No 93
>smart00360 RRM RNA recognition motif.
Probab=99.43 E-value=8.6e-13 Score=92.12 Aligned_cols=71 Identities=37% Similarity=0.761 Sum_probs=67.1
Q ss_pred EcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe
Q 015292 106 IGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (409)
Q Consensus 106 v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 176 (409)
|+|||..+++++|+.+|++||.|..+.+..++.++.++|+|||+|.+.++|.+|+..+++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988788999999999999999999999999999999998873
No 94
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=3.6e-13 Score=100.05 Aligned_cols=80 Identities=25% Similarity=0.482 Sum_probs=76.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
.+-.|||.++...+|+++|.+.|..||+|..+.|..++.||..+|||.|+|.+.+.|++|+..+|+..|.|..|.|.++.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999874
No 95
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.41 E-value=1.9e-12 Score=91.21 Aligned_cols=74 Identities=31% Similarity=0.572 Sum_probs=68.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 277 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
+|+|+|||..+++++|+++|+.||.|..+.+..+..+ .++|+|||+|.+.++|..|+..+++..+.|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987766 4479999999999999999999999999999999874
No 96
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.40 E-value=8.9e-13 Score=121.67 Aligned_cols=82 Identities=22% Similarity=0.433 Sum_probs=78.8
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCC
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (409)
+.+||+|||+++++++|..+|+..|.|.+++++.|+.+++++||||++|.+.++|.+|++.|||..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred Cc
Q 015292 356 AD 357 (409)
Q Consensus 356 ~~ 357 (409)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 97
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=9.8e-14 Score=132.83 Aligned_cols=235 Identities=18% Similarity=0.205 Sum_probs=192.3
Q ss_pred CCCCCeEEEcCCCCCCCHH-HHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe
Q 015292 98 PPHGSEVYIGGIPHDASEH-DLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~-~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 176 (409)
+...+...+.|+.+..... ..+..|..+|.|..|++......-....+.++.+....++..|.. ..+..+.++.+.|.
T Consensus 568 ~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~ 646 (881)
T KOG0128|consen 568 PLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVG 646 (881)
T ss_pred hhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCC
Confidence 3445667888887776665 567889999999999987743323334489999999999999984 68888899998887
Q ss_pred ecccc----------------cccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHH
Q 015292 177 TSQAK----------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY 240 (409)
Q Consensus 177 ~~~~~----------------~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 240 (409)
.+.+. .++|+++|+..+.+.+|...|..+|. +..+++... ...+.-+|+||+.|.....+.+
T Consensus 647 ~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~-~e~vqi~~h-~n~~~~rG~~Y~~F~~~~~~~a 724 (881)
T KOG0128|consen 647 LADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGT-IEVVQIVIH-KNEKRFRGKAYVEFLKPEHAGA 724 (881)
T ss_pred CCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccch-hhhHHHHHH-hhccccccceeeEeecCCchhh
Confidence 77543 35899999999999999999999987 666666533 5678889999999999999998
Q ss_pred HHHHhcCCCccCCCCCcceecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEE
Q 015292 241 SRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIG 320 (409)
Q Consensus 241 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~a 320 (409)
++......-+. ...|+|+|+|+..|.+.|+.+|+.+|.+.+++++..+.+.. +|.|
T Consensus 725 aV~f~d~~~~g-----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkp-kg~a 780 (881)
T KOG0128|consen 725 AVAFRDSCFFG-----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKP-KGKA 780 (881)
T ss_pred hhhhhhhhhhh-----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhcccc-ccce
Confidence 88765543211 15799999999999999999999999999999888877665 8999
Q ss_pred EEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCCCccC
Q 015292 321 FVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359 (409)
Q Consensus 321 fV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 359 (409)
||.|.+..+|.+++..+....+.-+.+.|..+.|.....
T Consensus 781 ~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~K~ 819 (881)
T KOG0128|consen 781 RVDYNTEADASRKVASVDVAGKRENNGEVQVSNPERDKK 819 (881)
T ss_pred eccCCCcchhhhhcccchhhhhhhcCccccccCCccccc
Confidence 999999999999999999888888899999888855444
No 98
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.38 E-value=4.9e-12 Score=89.06 Aligned_cols=74 Identities=41% Similarity=0.772 Sum_probs=68.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 103 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+|+|+|||+.+++++|+++|..||.|..+.+..+..+ .++++|||+|.+.++|..|+..+++..+.|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999987654 6789999999999999999999999999999998863
No 99
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.37 E-value=1.3e-12 Score=120.50 Aligned_cols=80 Identities=34% Similarity=0.662 Sum_probs=77.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecccc
Q 015292 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (409)
Q Consensus 102 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 181 (409)
+.|||||||+++++++|..+|+..|.|.+++++.|+.||+++||||++|.+.+.|..|++.||+..+.||+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998643
No 100
>smart00361 RRM_1 RNA recognition motif.
Probab=99.37 E-value=2.3e-12 Score=89.43 Aligned_cols=62 Identities=16% Similarity=0.350 Sum_probs=54.5
Q ss_pred HHHHHHHHh----hcCceeEEe-eCCCCCC--CCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015292 289 QDQLKKLFE----HHGRITKVV-VPPAKPG--QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (409)
Q Consensus 289 ~~~L~~~F~----~~G~v~~v~-i~~~~~~--~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~ 350 (409)
+++|+++|+ .||.|.+|. |+.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578899998 999999985 6666555 6679999999999999999999999999999999873
No 101
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.37 E-value=1e-12 Score=103.22 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=76.3
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
..+|||+||+..++++.|+++|-+.|+|.+++|++++-+...+|||||+|.+.++|.=|+.-||...+-||+|+|..+.
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 3799999999999999999999999999999999999999889999999999999999999999999999999999998
No 102
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.36 E-value=5.6e-12 Score=115.68 Aligned_cols=83 Identities=25% Similarity=0.500 Sum_probs=70.7
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCC
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (409)
..|||+|||.+++...|+++|..||.|....|.....+....+||||+|.+..++..||.+ +-..|++++|.|.-.++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 4599999999999999999999999999888876553333349999999999999999996 678899999999988775
Q ss_pred CccC
Q 015292 356 ADQK 359 (409)
Q Consensus 356 ~~~~ 359 (409)
....
T Consensus 368 ~~g~ 371 (419)
T KOG0116|consen 368 FRGN 371 (419)
T ss_pred cccc
Confidence 5543
No 103
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.33 E-value=5.4e-12 Score=114.33 Aligned_cols=80 Identities=30% Similarity=0.546 Sum_probs=76.3
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCC
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (409)
.++|||+|||+.+++++|+++|..||.|..|.|..++..+.++|||||.|.+.++|..|+..|++..|.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 48999999999999999999999999999999999987788899999999999999999999999999999999999654
No 104
>smart00361 RRM_1 RNA recognition motif.
Probab=99.31 E-value=1.2e-11 Score=85.82 Aligned_cols=61 Identities=26% Similarity=0.470 Sum_probs=55.6
Q ss_pred HHHHHHHHh----ccCCeeEEE-EeeCCCC--CCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 015292 115 EHDLRDFCQ----SIGEVTEVR-IMKGKDS--SENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (409)
Q Consensus 115 ~~~l~~~f~----~~G~v~~v~-i~~~~~~--g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 175 (409)
+++|+++|+ +||.|.+|. ++.++.+ +.++|||||.|.+.++|.+|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 568888998 999999996 7777666 899999999999999999999999999999999986
No 105
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=1.9e-11 Score=112.34 Aligned_cols=73 Identities=27% Similarity=0.467 Sum_probs=66.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 175 (409)
....++|+|-|||.+++.++|..+|+.||+|..|+..+. .+|.+||+|.+..+|++|++.|++..+.|+.|..
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 446789999999999999999999999999999776554 4889999999999999999999999999998883
No 106
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.28 E-value=1.9e-11 Score=80.85 Aligned_cols=56 Identities=43% Similarity=0.748 Sum_probs=50.9
Q ss_pred HHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 118 LRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 118 l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
|.++|++||.|..+.+..+. +++|||+|.+.++|.+|+..||+..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999998763 589999999999999999999999999999999875
No 107
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=5.5e-12 Score=104.88 Aligned_cols=84 Identities=21% Similarity=0.468 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
-+++|+|||..||......+|...|-+||.|++.++..|+.|..+|.|+||.|.++.+|+.||..|||..|+-++|+|.+
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
..++
T Consensus 362 KRPk 365 (371)
T KOG0146|consen 362 KRPK 365 (371)
T ss_pred cCcc
Confidence 6653
No 108
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.26 E-value=1.2e-11 Score=104.20 Aligned_cols=73 Identities=29% Similarity=0.614 Sum_probs=69.4
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCC
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (409)
.+|||+|||..+++.+|+.+|++||+|..+.|++ .||||+.++...|..||+.|||..|+|..|.|.-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK--------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec--------ccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 4799999999999999999999999999999996 69999999999999999999999999999999999887
Q ss_pred C
Q 015292 356 A 356 (409)
Q Consensus 356 ~ 356 (409)
.
T Consensus 75 s 75 (346)
T KOG0109|consen 75 S 75 (346)
T ss_pred C
Confidence 3
No 109
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.24 E-value=1.8e-11 Score=108.06 Aligned_cols=180 Identities=21% Similarity=0.302 Sum_probs=140.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
..+++|++++.+.+.+..+..++..+|.+..+.+........++|+++|.|...+.+..|+.......+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 47899999999999999999999999988888888877778999999999999999999996433334555444332221
Q ss_pred cccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcce
Q 015292 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (409)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (409)
... +. +.+
T Consensus 167 ~~~-~~-----------------------------~~n------------------------------------------ 174 (285)
T KOG4210|consen 167 RRG-LR-----------------------------PKN------------------------------------------ 174 (285)
T ss_pred ccc-cc-----------------------------ccc------------------------------------------
Confidence 100 00 000
Q ss_pred ecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCC
Q 015292 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (409)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~ 339 (409)
...........+.++|.||+++++.++|+..|..+|.|..++++.++.++.++|||||.|.+...+..++.. +.
T Consensus 175 -----~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~ 248 (285)
T KOG4210|consen 175 -----KLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QT 248 (285)
T ss_pred -----hhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-cc
Confidence 000000111113455999999999999999999999999999999999999999999999999999999987 88
Q ss_pred ceecCeEEEEEecCCCCc
Q 015292 340 YELDGQALECSLAKPQAD 357 (409)
Q Consensus 340 ~~~~g~~l~v~~a~~~~~ 357 (409)
..+.++++.|.+..+...
T Consensus 249 ~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 249 RSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred CcccCcccccccCCCCcc
Confidence 899999999999887644
No 110
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.22 E-value=3.8e-11 Score=98.39 Aligned_cols=80 Identities=26% Similarity=0.485 Sum_probs=72.5
Q ss_pred eEEEEcCCCCCCCHHHHHH----HHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 276 KAVYVKNLPRNVTQDQLKK----LFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~----~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
.+|||.||...+..++|+. +|++||.|.+|...+.. ..||-|||.|.+.+.|..|+.+|+|+.|-|++++|.|
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~---KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP---KMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC---CccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 4999999999999999988 99999999999987644 3479999999999999999999999999999999999
Q ss_pred cCCCCcc
Q 015292 352 AKPQADQ 358 (409)
Q Consensus 352 a~~~~~~ 358 (409)
|+.+..-
T Consensus 87 A~s~sdi 93 (221)
T KOG4206|consen 87 AKSDSDI 93 (221)
T ss_pred ccCccch
Confidence 9987653
No 111
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=9.7e-12 Score=107.50 Aligned_cols=83 Identities=18% Similarity=0.399 Sum_probs=79.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
.++...|||.-|.+-+|.++|.-+|+.||+|.+|.++++..||.+..||||+|.+.+++.+|.=+|++..|..++|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 015292 178 SQA 180 (409)
Q Consensus 178 ~~~ 180 (409)
+++
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 875
No 112
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.21 E-value=2.2e-10 Score=107.47 Aligned_cols=166 Identities=12% Similarity=0.072 Sum_probs=113.7
Q ss_pred cccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcC----CCccCC------
Q 015292 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN----PNFKLG------ 253 (409)
Q Consensus 184 l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~----~~~~~~------ 253 (409)
+.+.+++++....+++++|...- +....+..+ .......|-++|.|.....+.+|++.-+. +.+.+.
T Consensus 314 ~~~~gm~fn~~~nd~rkfF~g~~--~~~~~l~~~-~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~~~ 390 (944)
T KOG4307|consen 314 NNYKGMEFNNDFNDGRKFFPGRN--AQSTDLSEN-RVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGNLG 390 (944)
T ss_pred eeecccccccccchhhhhcCccc--ccccchhhh-hcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCccc
Confidence 44567788888888999887543 455555554 34455588999999999999999775331 111100
Q ss_pred -----CC---------------CcceecCCCCCCC--CCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeE-EeeCCC
Q 015292 254 -----TN---------------APTVSWADPRNVD--SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVVPPA 310 (409)
Q Consensus 254 -----~~---------------~~~~~~~~~~~~~--~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~ 310 (409)
++ ......+...... ......+.+|||..||..++...+.++|...-.|++ |.|.+.
T Consensus 391 ~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~ 470 (944)
T KOG4307|consen 391 RNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL 470 (944)
T ss_pred cccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC
Confidence 00 0000000000000 012233689999999999999999999998777776 777777
Q ss_pred CCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 311 KPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 311 ~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
..+.. ++.|||.|...+++..|...-+.+.++.|.|+|.-..
T Consensus 471 P~~~~-~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 471 PTDLL-RPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred Ccccc-cchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 66655 7999999999999988888778888888999997543
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=3.1e-10 Score=103.65 Aligned_cols=171 Identities=19% Similarity=0.310 Sum_probs=114.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCC--CCCcee---eEEEEecCHHHHHHHHHHhCCCccCCce
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKD--SSENKG---FAFVTFRNVELASKAIDKLNNTEFKGKK 172 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~g~~~g---~afV~F~~~~~A~~a~~~l~~~~~~g~~ 172 (409)
+.-++.|||++||++++++.|...|..||.+.-=.-.+... .-..+| |+|+-|.++.++..-+.++.. .-..-.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~~y 334 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGNYY 334 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccceE
Confidence 44567899999999999999999999999874222111111 113455 999999999998887766543 111122
Q ss_pred EEEeecccccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 015292 173 IRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKL 252 (409)
Q Consensus 173 l~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~ 252 (409)
|.|....-+.+ .|. |..+.+... -||..
T Consensus 335 f~vss~~~k~k-~VQ---------------------IrPW~laDs----------~fv~d-------------------- 362 (520)
T KOG0129|consen 335 FKVSSPTIKDK-EVQ---------------------IRPWVLADS----------DFVLD-------------------- 362 (520)
T ss_pred EEEecCccccc-cee---------------------EEeeEeccc----------hhhhc--------------------
Confidence 22221111100 010 111111110 01100
Q ss_pred CCCCcceecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHh-hcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHH
Q 015292 253 GTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFE-HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331 (409)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~ 331 (409)
......+.+||||++||.-++.++|-.+|. -||.|..+-|-.|..-.-++|-|-|+|.+..+=.
T Consensus 363 ---------------~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi 427 (520)
T KOG0129|consen 363 ---------------HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYI 427 (520)
T ss_pred ---------------cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHH
Confidence 011223348999999999999999999998 7999999999999777778999999999999999
Q ss_pred HHHHH
Q 015292 332 KALKN 336 (409)
Q Consensus 332 ~A~~~ 336 (409)
+||.+
T Consensus 428 ~AIsa 432 (520)
T KOG0129|consen 428 KAISA 432 (520)
T ss_pred HHHhh
Confidence 99985
No 114
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.16 E-value=9.9e-11 Score=94.28 Aligned_cols=80 Identities=24% Similarity=0.447 Sum_probs=76.1
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhc-CceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCC
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHH-GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~-G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (409)
..++|..||..+.+..|..+|.+| |.|..+++-+++.++.|+|||||+|.+.+.|.-|-+.||+.-|.++.|.|.+-.+
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence 579999999999999999999998 7888999989999999999999999999999999999999999999999999988
Q ss_pred C
Q 015292 355 Q 355 (409)
Q Consensus 355 ~ 355 (409)
.
T Consensus 130 e 130 (214)
T KOG4208|consen 130 E 130 (214)
T ss_pred h
Confidence 7
No 115
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=5.6e-11 Score=102.87 Aligned_cols=85 Identities=15% Similarity=0.315 Sum_probs=79.9
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
++.++|||.-|.+-++.++|.-+|+.||.|.++.|+++..++-+-.||||+|.+.++.++|.=.|++..|+.++|.|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 44589999999999999999999999999999999999999988899999999999999999999999999999999998
Q ss_pred CCCCc
Q 015292 353 KPQAD 357 (409)
Q Consensus 353 ~~~~~ 357 (409)
.+...
T Consensus 317 QSVsk 321 (479)
T KOG0415|consen 317 QSVSK 321 (479)
T ss_pred hhhhh
Confidence 76555
No 116
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.15 E-value=4.2e-10 Score=105.70 Aligned_cols=75 Identities=12% Similarity=0.213 Sum_probs=65.5
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeE-EeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
++|-+.|+|++++-++|.+||..|-.+-. |.|.++ +.+...|-|.|-|.+.++|.+|...|++..|..|.|.|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 68999999999999999999999977664 555554 4445589999999999999999999999999999998865
No 117
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=3.2e-10 Score=105.48 Aligned_cols=161 Identities=22% Similarity=0.438 Sum_probs=125.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+.....+||++||..+++.++++++..||++....++.+..+|.++||||.+|.++-....|+..|||..+.++.|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 33456799999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccccc----------cccCCCCC-----------------CCCh-------------HHHHHHHHhhCCceeEEEEeec
Q 015292 178 SQAKYR----------LFIGNIPR-----------------NWGS-------------EDLQKVVSEVGPGVTGVELVKD 217 (409)
Q Consensus 178 ~~~~~~----------l~v~~l~~-----------------~~~~-------------~~l~~~f~~~g~~v~~~~~~~~ 217 (409)
+-.... .-+.+|+. -++. ++++.-++.||. |.+|.+.+.
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~-v~~v~ipr~ 444 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGA-VRSVEIPRP 444 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCc-eeEEecCCC
Confidence 743210 01111211 1122 244556778888 888888776
Q ss_pred C--CCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcceec
Q 015292 218 M--KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (409)
Q Consensus 218 ~--~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (409)
. .......|-.||+|.+.++++.|+++|++..|. ++.+...+
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~--nRtVvtsY 488 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFA--NRTVVASY 488 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCceeC--CcEEEEEe
Confidence 2 233455677899999999999999999998553 44444333
No 118
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=1.3e-11 Score=99.80 Aligned_cols=142 Identities=25% Similarity=0.345 Sum_probs=117.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe
Q 015292 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (409)
Q Consensus 97 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 176 (409)
.++..+||||.|+...++++-|.++|-+-|+|..|.|...+. +..+ ||||.|.++-+..-|++.+||..+.++.|.|.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 355679999999999999999999999999999999988765 5556 99999999999999999999999888887764
Q ss_pred ecccccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCC
Q 015292 177 TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA 256 (409)
Q Consensus 177 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 256 (409)
+
T Consensus 83 ~------------------------------------------------------------------------------- 83 (267)
T KOG4454|consen 83 L------------------------------------------------------------------------------- 83 (267)
T ss_pred c-------------------------------------------------------------------------------
Confidence 2
Q ss_pred cceecCCCCCCCCCCCccceEEEEcC----CCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHH
Q 015292 257 PTVSWADPRNVDSSGASQVKAVYVKN----LPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332 (409)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~ 332 (409)
+.+| |...++.+.+...|+.-|.+..+++.++.+++. +.++|+.+--.-+.-.
T Consensus 84 ----------------------r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rn-rn~~~~~~qr~~~~P~ 140 (267)
T KOG4454|consen 84 ----------------------RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRN-RNFGFVTYQRLCAVPF 140 (267)
T ss_pred ----------------------ccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCc-cCccchhhhhhhcCcH
Confidence 2222 445678889999999999999999999988555 7889998877666666
Q ss_pred HHHHhCCcee
Q 015292 333 ALKNTEKYEL 342 (409)
Q Consensus 333 A~~~l~~~~~ 342 (409)
++....+...
T Consensus 141 ~~~~y~~l~~ 150 (267)
T KOG4454|consen 141 ALDLYQGLEL 150 (267)
T ss_pred HhhhhcccCc
Confidence 7776555443
No 119
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.12 E-value=9.7e-11 Score=102.43 Aligned_cols=143 Identities=24% Similarity=0.298 Sum_probs=111.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcc----CCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe-
Q 015292 102 SEVYIGGIPHDASEHDLRDFCQSI----GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS- 176 (409)
Q Consensus 102 ~~l~v~nLp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~- 176 (409)
-.|.+++||++++..++..||.+- |.+..|.++...+ |+..|-|||.|..+++|+.||.+ |...|+-|.|.+.
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 358899999999999999999642 2455666666544 99999999999999999999964 4433443333332
Q ss_pred ------------------------------------ecccccccccCCCCCCCChHHHHHHHHhhCCceeE--EEEeecC
Q 015292 177 ------------------------------------TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTG--VELVKDM 218 (409)
Q Consensus 177 ------------------------------------~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~--~~~~~~~ 218 (409)
...++.+|.+++||...+.++|..+|..|...|.- +.++.+
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N- 318 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN- 318 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-
Confidence 22345689999999999999999999999775555 555554
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 015292 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248 (409)
Q Consensus 219 ~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 248 (409)
..|+..|-|||+|.+.+.|..|....+++
T Consensus 319 -~qGrPSGeAFIqm~nae~a~aaaqk~hk~ 347 (508)
T KOG1365|consen 319 -GQGRPSGEAFIQMRNAERARAAAQKCHKK 347 (508)
T ss_pred -CCCCcChhhhhhhhhhHHHHHHHHHHHHh
Confidence 88999999999999999988887765543
No 120
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=1.1e-10 Score=112.83 Aligned_cols=166 Identities=17% Similarity=0.251 Sum_probs=132.8
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 015292 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (409)
Q Consensus 96 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 175 (409)
.+...++|||++||+..+++.+|+..|..+|.|..|.|-.... +.-..|+||.|.+...+-+|.-.+.+..|..-.+++
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 4455788999999999999999999999999999999876633 556779999999999888887666665543222222
Q ss_pred eecccccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCC
Q 015292 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN 255 (409)
Q Consensus 176 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~ 255 (409)
.+...
T Consensus 446 glG~~--------------------------------------------------------------------------- 450 (975)
T KOG0112|consen 446 GLGQP--------------------------------------------------------------------------- 450 (975)
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 11100
Q ss_pred CcceecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 015292 256 APTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (409)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~ 335 (409)
.....+.|++++|+..+....|...|..||.|..|.+-... -||+|.|.+...|+.|+.
T Consensus 451 ---------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq------~yayi~yes~~~aq~a~~ 509 (975)
T KOG0112|consen 451 ---------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ------PYAYIQYESPPAAQAATH 509 (975)
T ss_pred ---------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC------cceeeecccCccchhhHH
Confidence 01123789999999999999999999999999998886543 599999999999999999
Q ss_pred HhCCceecC--eEEEEEecCCCCcc
Q 015292 336 NTEKYELDG--QALECSLAKPQADQ 358 (409)
Q Consensus 336 ~l~~~~~~g--~~l~v~~a~~~~~~ 358 (409)
.|.|..|+| +.|+|.|+.+....
T Consensus 510 ~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 510 DMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred HHhcCcCCCCCcccccccccCCCCC
Confidence 999999986 78999999876543
No 121
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.11 E-value=2.6e-10 Score=91.88 Aligned_cols=82 Identities=28% Similarity=0.522 Sum_probs=75.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc-CCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSI-GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
....++|..+|.-+-+..|..+|.+| |.|..+++.+++.||.++|||||+|.+++.|.-|.+.||+..|.|+.|.|..-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45679999999999999999999998 78999999999999999999999999999999999999999999999999876
Q ss_pred ccc
Q 015292 179 QAK 181 (409)
Q Consensus 179 ~~~ 181 (409)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 544
No 122
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=6e-10 Score=96.57 Aligned_cols=77 Identities=26% Similarity=0.484 Sum_probs=69.7
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHH-hCCceecCeEEEEE
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN-TEKYELDGQALECS 350 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~-l~~~~~~g~~l~v~ 350 (409)
....++|||+||-..+++.+|++.|-+||.|.+|++...+ ++|||+|.+.++|+.|... +|...|+|++|.|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 3446899999999999999999999999999999998874 8999999999999987776 56777899999999
Q ss_pred ecCC
Q 015292 351 LAKP 354 (409)
Q Consensus 351 ~a~~ 354 (409)
|+++
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9999
No 123
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.07 E-value=3.1e-10 Score=104.23 Aligned_cols=81 Identities=22% Similarity=0.491 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
..+++|||.+|...+...+|+++|++||+|+..+++.+..+-..+.|+||++.+.++|.+||+.||.+.|+|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34678999999999999999999999999999999999777778999999999999999999999999999999999887
Q ss_pred c
Q 015292 179 Q 179 (409)
Q Consensus 179 ~ 179 (409)
.
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 5
No 124
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.06 E-value=4.8e-10 Score=106.75 Aligned_cols=77 Identities=25% Similarity=0.509 Sum_probs=72.6
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCC
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (409)
++||||++|+..+++.+|..+|+.||.|.+|.++.. ||||||.+....+|.+|+.+|++..+.++.|+|.||..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 699999999999999999999999999999999876 59999999999999999999999999999999999976
Q ss_pred CCc
Q 015292 355 QAD 357 (409)
Q Consensus 355 ~~~ 357 (409)
...
T Consensus 495 ~G~ 497 (894)
T KOG0132|consen 495 KGP 497 (894)
T ss_pred CCc
Confidence 544
No 125
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.04 E-value=4.1e-10 Score=103.42 Aligned_cols=82 Identities=22% Similarity=0.367 Sum_probs=75.7
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
.-+++|||.+|...+...+|+.+|++||+|+-.+++.+..+..-|+|+||++.+.++|.+||..||.+.|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34689999999999999999999999999999999988776666899999999999999999999999999999999988
Q ss_pred CC
Q 015292 353 KP 354 (409)
Q Consensus 353 ~~ 354 (409)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 75
No 126
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.01 E-value=3.2e-09 Score=86.41 Aligned_cols=87 Identities=23% Similarity=0.395 Sum_probs=72.3
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCC-CCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceec---CeEEEEE
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPP-AKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD---GQALECS 350 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~-~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~---g~~l~v~ 350 (409)
.++|||.+||.++...+|..+|..|-.-+...|.. ++.+..++-+|||.|.+...|.+|+..|||.+|+ +..|+|.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 58999999999999999999999987666555533 3333444579999999999999999999999996 8999999
Q ss_pred ecCCCCccCCC
Q 015292 351 LAKPQADQKSA 361 (409)
Q Consensus 351 ~a~~~~~~~~~ 361 (409)
+|+.+.....+
T Consensus 114 lAKSNtK~kr~ 124 (284)
T KOG1457|consen 114 LAKSNTKRKRR 124 (284)
T ss_pred ehhcCcccccC
Confidence 99987665443
No 127
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.00 E-value=8.9e-10 Score=104.97 Aligned_cols=75 Identities=27% Similarity=0.541 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
.++||||++|+..+++.+|+++|+.||.|.+|.++.. +|+|||.+.+..+|.+|+.+|++..+.++.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 5799999999999999999999999999999999764 8999999999999999999999999999999999986
Q ss_pred c
Q 015292 180 A 180 (409)
Q Consensus 180 ~ 180 (409)
.
T Consensus 494 g 494 (894)
T KOG0132|consen 494 G 494 (894)
T ss_pred c
Confidence 4
No 128
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.98 E-value=1.8e-09 Score=95.71 Aligned_cols=81 Identities=32% Similarity=0.629 Sum_probs=75.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeeccc
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 180 (409)
...|||++||.++++.+++++|.+||.|..+.++.+..+.+++||+||.|.+.+++.+++. ..-+.|.|+.+.|..+.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 5689999999999999999999999999999999999999999999999999999999994 688899999999998876
Q ss_pred cc
Q 015292 181 KY 182 (409)
Q Consensus 181 ~~ 182 (409)
+.
T Consensus 176 k~ 177 (311)
T KOG4205|consen 176 KE 177 (311)
T ss_pred hh
Confidence 53
No 129
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=3.3e-09 Score=92.05 Aligned_cols=76 Identities=34% Similarity=0.552 Sum_probs=67.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHh-CCCccCCceEEEee
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL-NNTEFKGKKIRCST 177 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l-~~~~~~g~~l~v~~ 177 (409)
...++|||++|-..+++.+|+++|.+||+|.++.+... +++|||+|.+..+|..|.+.+ +...+.|++|.|.|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 34679999999999999999999999999999999875 679999999999999987654 44557999999998
Q ss_pred ccc
Q 015292 178 SQA 180 (409)
Q Consensus 178 ~~~ 180 (409)
..+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 876
No 130
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.91 E-value=2.5e-08 Score=84.90 Aligned_cols=83 Identities=28% Similarity=0.438 Sum_probs=76.4
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCC
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (409)
..+|+|.|||+.++.++|+++|..||.+..+-|-.++.+.+ .|.|-|.|...++|.+|+..+||..++|+.|.+....+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s-~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRS-LGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCC-CccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 37899999999999999999999999999999999988877 79999999999999999999999999999999988876
Q ss_pred CCcc
Q 015292 355 QADQ 358 (409)
Q Consensus 355 ~~~~ 358 (409)
....
T Consensus 162 ~~~~ 165 (243)
T KOG0533|consen 162 PSQS 165 (243)
T ss_pred cccc
Confidence 5543
No 131
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.88 E-value=3.2e-09 Score=88.22 Aligned_cols=133 Identities=16% Similarity=0.261 Sum_probs=98.6
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcce----ecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHH
Q 015292 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV----SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295 (409)
Q Consensus 220 ~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~ 295 (409)
..+.-.+++|+.|.....-.++-..-+.+. ++...++. .|.++.... -.....+||++.|...++.+.|-..
T Consensus 135 ~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kk--i~~~~VR~a~gtswedPsl~e--w~~~DfRIfcgdlgNevnd~vl~ra 210 (290)
T KOG0226|consen 135 RPQPIRPEAFESFKASDALLKAETEKEKKK--IGKPPVRLAAGTSWEDPSLAE--WDEDDFRIFCGDLGNEVNDDVLARA 210 (290)
T ss_pred CCCccCcccccCcchhhhhhhhcccccccc--ccCcceeeccccccCCccccc--CccccceeecccccccccHHHHHHH
Confidence 455667788888877665555444333321 22222222 222222111 1223479999999999999999999
Q ss_pred HhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCCC
Q 015292 296 FEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (409)
Q Consensus 296 F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 356 (409)
|.+|-.....++++++.+++++||+||.|.++.++.+|+..|+|..++.|+|++.-+..+.
T Consensus 211 f~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 211 FKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred HHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 9999999999999999999999999999999999999999999999999999887665443
No 132
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.87 E-value=3e-10 Score=109.42 Aligned_cols=135 Identities=24% Similarity=0.328 Sum_probs=116.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
...++||+||+..+.+.+|...|..+|.+..+.+.-..+.++.+|+|||.|..++++.+|+.... ..+.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d-~~~~g--------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD-SCFFG--------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhh-hhhhh---------
Confidence 34679999999999999999999999998888877666779999999999999999999996544 44444
Q ss_pred cccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 015292 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248 (409)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 248 (409)
+..++|.|+|+..|.+.++.+++.+|. +.+.+++.. ..|.++|.+||.|.+...+.++...+...
T Consensus 736 -K~~v~i~g~pf~gt~e~~k~l~~~~gn-~~~~~~vt~--r~gkpkg~a~v~y~~ea~~s~~~~s~d~~ 800 (881)
T KOG0128|consen 736 -KISVAISGPPFQGTKEELKSLASKTGN-VTSLRLVTV--RAGKPKGKARVDYNTEADASRKVASVDVA 800 (881)
T ss_pred -hhhhheeCCCCCCchHHHHhhccccCC-ccccchhhh--hccccccceeccCCCcchhhhhcccchhh
Confidence 557899999999999999999999998 888886665 78899999999999999998887665543
No 133
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.81 E-value=3.8e-08 Score=71.44 Aligned_cols=81 Identities=21% Similarity=0.322 Sum_probs=71.3
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhh--cCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceec----CeEEEE
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEH--HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD----GQALEC 349 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~--~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~----g~~l~v 349 (409)
++|.|+|||...|.++|.+++.. .|....+.++.|-.+..+.|||||.|.+++.|.+-...++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998865 366778999999988888999999999999999999999998885 577789
Q ss_pred EecCCCC
Q 015292 350 SLAKPQA 356 (409)
Q Consensus 350 ~~a~~~~ 356 (409)
.||+-+.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 9887653
No 134
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=1.1e-08 Score=84.97 Aligned_cols=74 Identities=26% Similarity=0.456 Sum_probs=68.1
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCC
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (409)
..+||++||+.+.+.+|..||..||.|..|.+. .||+||+|.+..+|..|+..||+..|.|-.+.|.+++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 369999999999999999999999999998885 389999999999999999999999999988999999876
Q ss_pred Cc
Q 015292 356 AD 357 (409)
Q Consensus 356 ~~ 357 (409)
+.
T Consensus 74 ~~ 75 (216)
T KOG0106|consen 74 RR 75 (216)
T ss_pred cc
Confidence 44
No 135
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.78 E-value=3.3e-08 Score=84.20 Aligned_cols=80 Identities=20% Similarity=0.402 Sum_probs=73.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
...+|+|.|||+.++.++|+++|..||.+..+-+-.++. |++.|+|-|.|...++|..|++.+++..+.|+.+.+....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 347899999999999999999999999999988888865 9999999999999999999999999999999999887655
Q ss_pred c
Q 015292 180 A 180 (409)
Q Consensus 180 ~ 180 (409)
+
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 3
No 136
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=1.4e-08 Score=93.82 Aligned_cols=72 Identities=32% Similarity=0.504 Sum_probs=66.7
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~ 348 (409)
..+..+|+|-|||..++.++|+.+|+.||.|..|+..+.+ +|..||+|.+..+|++|++.|++..|.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-----RGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-----CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4456899999999999999999999999999998877665 79999999999999999999999999999998
No 137
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.73 E-value=3.3e-08 Score=85.91 Aligned_cols=82 Identities=27% Similarity=0.368 Sum_probs=74.5
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeE--------EeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeE
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITK--------VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA 346 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--------v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~ 346 (409)
.+.|||.|||.++|.+++.++|++||.|.. |+|.++..|.. +|=|++.|-..++..-|+..|++..|.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~l-KGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKL-KGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCc-cCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 467999999999999999999999998873 88999888666 899999999999999999999999999999
Q ss_pred EEEEecCCCCc
Q 015292 347 LECSLAKPQAD 357 (409)
Q Consensus 347 l~v~~a~~~~~ 357 (409)
|+|..|+-+..
T Consensus 213 ~rVerAkfq~K 223 (382)
T KOG1548|consen 213 LRVERAKFQMK 223 (382)
T ss_pred EEEehhhhhhc
Confidence 99999976443
No 138
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.72 E-value=3.2e-09 Score=93.38 Aligned_cols=212 Identities=14% Similarity=0.175 Sum_probs=131.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCC---CCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS---SENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 102 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
..|.|.||.+++|.+++..||...|+|..++|+.+... ......|||.|.+...+..|- .|.+..|-++.|.|.+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 47999999999999999999999999999999874322 234568999999999988887 68888888888877654
Q ss_pred ccccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcc
Q 015292 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (409)
Q Consensus 179 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (409)
... +-... .+|..++..-.-..++ +..| |.|... ++..-++...
T Consensus 87 ~~~-----------~~p~r--~af~~l~~~navprll---~pdg-------~Lp~~~-------------~lt~~nh~p~ 130 (479)
T KOG4676|consen 87 GDE-----------VIPDR--FAFVELADQNAVPRLL---PPDG-------VLPGDR-------------PLTKINHSPN 130 (479)
T ss_pred CCC-----------CCccH--HHHHhcCccccccccc---CCCC-------ccCCCC-------------ccccccCCcc
Confidence 311 11111 1444443311000000 0000 000000 0000000000
Q ss_pred eecCCCCCCCCC----CCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHH
Q 015292 259 VSWADPRNVDSS----GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (409)
Q Consensus 259 ~~~~~~~~~~~~----~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~ 334 (409)
.-.-.|...+.. ...-.++|+|.+|+..+...++.+.|..+|.|....+.-... .-+|.|.|....+...|+
T Consensus 131 ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~----s~~c~~sf~~qts~~hal 206 (479)
T KOG4676|consen 131 AILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSR----SSSCSHSFRKQTSSKHAL 206 (479)
T ss_pred ceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCC----CcchhhhHhhhhhHHHHH
Confidence 000001111100 001127899999999999999999999999998877754432 246779999888888898
Q ss_pred HHhCCceecCeEEEEEecCCC
Q 015292 335 KNTEKYELDGQALECSLAKPQ 355 (409)
Q Consensus 335 ~~l~~~~~~g~~l~v~~a~~~ 355 (409)
. ++|+.+.-...++...+|.
T Consensus 207 r-~~gre~k~qhsr~ai~kP~ 226 (479)
T KOG4676|consen 207 R-SHGRERKRQHSRRAIIKPH 226 (479)
T ss_pred H-hcchhhhhhhhhhhhcCcc
Confidence 8 5787777555555555554
No 139
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.72 E-value=6.7e-08 Score=82.66 Aligned_cols=81 Identities=27% Similarity=0.396 Sum_probs=76.5
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
..+.+||+|+.+.+|.+.+...|+.||.|..|.|+.++..+.++|||||+|.+.+.+..|+. |++..|.|+.+.|.+.+
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 34789999999999999999999999999999999999998889999999999999999999 99999999999999887
Q ss_pred CC
Q 015292 354 PQ 355 (409)
Q Consensus 354 ~~ 355 (409)
-.
T Consensus 179 ~~ 180 (231)
T KOG4209|consen 179 TN 180 (231)
T ss_pred ee
Confidence 66
No 140
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.68 E-value=3.7e-08 Score=90.82 Aligned_cols=78 Identities=24% Similarity=0.477 Sum_probs=67.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
..+|||+|||.+++..+|+++|+.||.|....|......+...+||||+|.+...+..||.+ +...+++++|.|..-.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 35699999999999999999999999999988877653355559999999999999999975 6888999999997543
No 141
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.68 E-value=2.4e-07 Score=67.27 Aligned_cols=78 Identities=21% Similarity=0.262 Sum_probs=66.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhc--cCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccC----CceEEE
Q 015292 102 SEVYIGGIPHDASEHDLRDFCQS--IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK----GKKIRC 175 (409)
Q Consensus 102 ~~l~v~nLp~~~t~~~l~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~----g~~l~v 175 (409)
+||.|+|||...|.+.|.+++.. .|...-+.+..|..++.+.|||||.|.+++.|.+-.+..+|..|. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 79999999999999999998876 367778888889888999999999999999999999999999885 344455
Q ss_pred eecc
Q 015292 176 STSQ 179 (409)
Q Consensus 176 ~~~~ 179 (409)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 5553
No 142
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.65 E-value=1.3e-07 Score=64.97 Aligned_cols=69 Identities=26% Similarity=0.483 Sum_probs=48.2
Q ss_pred CeEEEcCCCCCCCHHHHHH----HHhccC-CeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe
Q 015292 102 SEVYIGGIPHDASEHDLRD----FCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (409)
Q Consensus 102 ~~l~v~nLp~~~t~~~l~~----~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 176 (409)
+.|+|.|||.+.+...|+. ++..|| .|..|. .+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 5799999999999887665 445665 676662 4689999999999999999999999999999999
Q ss_pred eccc
Q 015292 177 TSQA 180 (409)
Q Consensus 177 ~~~~ 180 (409)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8753
No 143
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.64 E-value=4.4e-08 Score=83.76 Aligned_cols=80 Identities=25% Similarity=0.420 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
.+.+.+||+|+.+.+|.+++..+|+.||.|..+.|.+++.+|.++|||||+|.+.+.+..++. |++..|.|+.|.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 356789999999999999999999999999999999999999999999999999999999996 9999999999999765
Q ss_pred c
Q 015292 179 Q 179 (409)
Q Consensus 179 ~ 179 (409)
.
T Consensus 178 r 178 (231)
T KOG4209|consen 178 R 178 (231)
T ss_pred e
Confidence 4
No 144
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.63 E-value=2.4e-08 Score=83.24 Aligned_cols=73 Identities=32% Similarity=0.416 Sum_probs=63.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCC--------CCcee----eEEEEecCHHHHHHHHHHhCCCc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS--------SENKG----FAFVTFRNVELASKAIDKLNNTE 167 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--------g~~~g----~afV~F~~~~~A~~a~~~l~~~~ 167 (409)
....||+++||+.+...-|+++|+.||.|-+|.|.....+ |.++. -+||+|.+...|.++.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999999876555 33333 38899999999999999999999
Q ss_pred cCCce
Q 015292 168 FKGKK 172 (409)
Q Consensus 168 ~~g~~ 172 (409)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99976
No 145
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.61 E-value=3e-07 Score=63.15 Aligned_cols=72 Identities=22% Similarity=0.406 Sum_probs=48.9
Q ss_pred eEEEEcCCCCCCCHHHH----HHHHhhcC-ceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015292 276 KAVYVKNLPRNVTQDQL----KKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L----~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~ 350 (409)
..|+|.|||.+.+...| ++++..|| .|..|. .+.|+|.|.+.+.|.+|...|+|..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 57999999999887655 56667787 465552 2689999999999999999999999999999999
Q ss_pred ecCCCCc
Q 015292 351 LAKPQAD 357 (409)
Q Consensus 351 ~a~~~~~ 357 (409)
|......
T Consensus 73 ~~~~~r~ 79 (90)
T PF11608_consen 73 FSPKNRE 79 (90)
T ss_dssp SS--S--
T ss_pred EcCCccc
Confidence 9865443
No 146
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.61 E-value=1.4e-07 Score=89.39 Aligned_cols=86 Identities=23% Similarity=0.325 Sum_probs=76.1
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCC---CCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAK---PGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~---~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~ 348 (409)
.+.+++|||+||++.+++..|...|..||+|..|+|+..+ .....+.||||-|.+..+|.+|+..|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4557899999999999999999999999999999998655 2334467999999999999999999999999999999
Q ss_pred EEecCCCCc
Q 015292 349 CSLAKPQAD 357 (409)
Q Consensus 349 v~~a~~~~~ 357 (409)
+-|++...-
T Consensus 251 ~gWgk~V~i 259 (877)
T KOG0151|consen 251 LGWGKAVPI 259 (877)
T ss_pred ecccccccc
Confidence 999976543
No 147
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.55 E-value=1.6e-08 Score=89.91 Aligned_cols=160 Identities=17% Similarity=0.332 Sum_probs=124.2
Q ss_pred cccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcceec
Q 015292 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (409)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (409)
+.+++++|.+.++..+|..+|...-.....-.++ ..+|+||.+.+...+.+++..+++. ..+.|....+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~--------k~gyafvd~pdq~wa~kaie~~sgk-~elqGkr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV--------KSGYAFVDCPDQQWANKAIETLSGK-VELQGKRQEVEH 72 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee--------ecceeeccCCchhhhhhhHHhhchh-hhhcCceeeccc
Confidence 3689999999999999999998753312222222 3589999999999999999998874 455666666666
Q ss_pred CCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCce
Q 015292 262 ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~ 341 (409)
+-++.. .++.+-|+|+|+...++.|-.++..||.|.++..+...... -..-|+|.+.+.++.||..|+|..
T Consensus 73 sv~kkq------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et---avvnvty~~~~~~~~ai~kl~g~Q 143 (584)
T KOG2193|consen 73 SVPKKQ------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET---AVVNVTYSAQQQHRQAIHKLNGPQ 143 (584)
T ss_pred hhhHHH------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH---HHHHHHHHHHHHHHHHHHhhcchH
Confidence 555432 23679999999999999999999999999988775433211 234478899999999999999999
Q ss_pred ecCeEEEEEecCCCCccC
Q 015292 342 LDGQALECSLAKPQADQK 359 (409)
Q Consensus 342 ~~g~~l~v~~a~~~~~~~ 359 (409)
+....++|.|-.......
T Consensus 144 ~en~~~k~~YiPdeq~~q 161 (584)
T KOG2193|consen 144 LENQHLKVGYIPDEQNAQ 161 (584)
T ss_pred hhhhhhhcccCchhhhhc
Confidence 999999999987655443
No 148
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.54 E-value=8.5e-08 Score=79.90 Aligned_cols=81 Identities=16% Similarity=0.378 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+....+||.+.|...++.+-|...|++|-.....++++++.||+++||+||.|.++.++..|+..++|.+++.+.|....
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred c
Q 015292 178 S 178 (409)
Q Consensus 178 ~ 178 (409)
+
T Consensus 267 S 267 (290)
T KOG0226|consen 267 S 267 (290)
T ss_pred h
Confidence 4
No 149
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.50 E-value=6.3e-08 Score=78.80 Aligned_cols=79 Identities=20% Similarity=0.322 Sum_probs=72.7
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
..++|||.|+...++++-|.++|-+-|+|..|.|+.++++.. + ||||.|.+.-+..-|+..|||..+.++.+.|.+-.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~-k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQ-K-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCC-c-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 347999999999999999999999999999999999998887 4 99999999999999999999999999988887754
Q ss_pred C
Q 015292 354 P 354 (409)
Q Consensus 354 ~ 354 (409)
.
T Consensus 86 G 86 (267)
T KOG4454|consen 86 G 86 (267)
T ss_pred C
Confidence 4
No 150
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.49 E-value=3.2e-07 Score=87.02 Aligned_cols=82 Identities=20% Similarity=0.334 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCC---CCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKD---SSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 174 (409)
.+..++|||+||++.+++..|...|..||+|.+|+|+-.+. ..+.+-++||-|.+..+|.+|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 56678999999999999999999999999999999976432 345677999999999999999999999999999999
Q ss_pred Eeecc
Q 015292 175 CSTSQ 179 (409)
Q Consensus 175 v~~~~ 179 (409)
+.++.
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 98873
No 151
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.45 E-value=8.1e-07 Score=78.20 Aligned_cols=85 Identities=19% Similarity=0.282 Sum_probs=77.8
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCcee--------EEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecC
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT--------KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--------~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g 344 (409)
....+|||-+||..++..+|.++|.++|.|. .|.|.+++.+..+||-|.|.|.+...|+.|+.-+++..|.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3447899999999999999999999999876 37888899999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCc
Q 015292 345 QALECSLAKPQAD 357 (409)
Q Consensus 345 ~~l~v~~a~~~~~ 357 (409)
.+|+|.+|.....
T Consensus 144 n~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 144 NTIKVSLAERRTG 156 (351)
T ss_pred CCchhhhhhhccC
Confidence 9999999987764
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.35 E-value=9.9e-07 Score=65.82 Aligned_cols=71 Identities=18% Similarity=0.361 Sum_probs=46.0
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCC-----ceecCeEEEEE
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK-----YELDGQALECS 350 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~-----~~~~g~~l~v~ 350 (409)
..|+|.+++..++.++|+.+|+.||.|..|.+.+.. ..|||.|.+.+.|++|+..+.- ..|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 579999999999999999999999999999998764 5899999999999999997653 35666666665
Q ss_pred ec
Q 015292 351 LA 352 (409)
Q Consensus 351 ~a 352 (409)
.-
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 53
No 153
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.22 E-value=1.4e-06 Score=76.70 Aligned_cols=84 Identities=24% Similarity=0.449 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCee--------EEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCC
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVT--------EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g 170 (409)
....+|||.+||..++..+|.++|.++|.|. .|+|.+++.|++.|+-|.|.|.+...|+.|+.-+++..+.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3457899999999999999999999999874 47889999999999999999999999999999999999999
Q ss_pred ceEEEeeccccc
Q 015292 171 KKIRCSTSQAKY 182 (409)
Q Consensus 171 ~~l~v~~~~~~~ 182 (409)
.+|+|..+....
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999998876543
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.15 E-value=5.5e-06 Score=61.81 Aligned_cols=69 Identities=28% Similarity=0.487 Sum_probs=44.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCC-----ccCCceEEEe
Q 015292 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT-----EFKGKKIRCS 176 (409)
Q Consensus 102 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~-----~~~g~~l~v~ 176 (409)
+.|+|.+++..++.++|+++|+.||.|..|.+.+. ...|||.|.+++.|+.|++.+... .+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 57899999999999999999999999999998764 447999999999999999877654 3445444443
No 155
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.09 E-value=1.5e-05 Score=69.72 Aligned_cols=78 Identities=15% Similarity=0.191 Sum_probs=67.3
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCc--eeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEE-EEEec
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGR--ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQAL-ECSLA 352 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~--v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l-~v~~a 352 (409)
.++||+||-+.+|+++|.+.+...|. |..++++.++.+++++|||+|-..+..+.++.+..|-.+.|.|..- .+.+.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 68999999999999999999988774 6789999999999999999999999888899999898889988554 44444
Q ss_pred C
Q 015292 353 K 353 (409)
Q Consensus 353 ~ 353 (409)
+
T Consensus 161 K 161 (498)
T KOG4849|consen 161 K 161 (498)
T ss_pred h
Confidence 3
No 156
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.02 E-value=1.3e-05 Score=69.61 Aligned_cols=90 Identities=18% Similarity=0.454 Sum_probs=68.5
Q ss_pred CCCeEEEcCCCCCCCHHHH------HHHHhccCCeeEEEEeeCCCCC-Cceee--EEEEecCHHHHHHHHHHhCCCccCC
Q 015292 100 HGSEVYIGGIPHDASEHDL------RDFCQSIGEVTEVRIMKGKDSS-ENKGF--AFVTFRNVELASKAIDKLNNTEFKG 170 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l------~~~f~~~G~v~~v~i~~~~~~g-~~~g~--afV~F~~~~~A~~a~~~l~~~~~~g 170 (409)
...-+||-+||+.+..+++ .++|.+||.|..|.+-+...+- ...+. .||+|.+.++|.+||...+|..+.|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 3456899999999877763 4799999999888776543211 11222 4999999999999999999999999
Q ss_pred ceEEEeeccccc-ccccCCC
Q 015292 171 KKIRCSTSQAKY-RLFIGNI 189 (409)
Q Consensus 171 ~~l~v~~~~~~~-~l~v~~l 189 (409)
|.|+..+...+. +.|++|+
T Consensus 193 r~lkatYGTTKYCtsYLRn~ 212 (480)
T COG5175 193 RVLKATYGTTKYCTSYLRNA 212 (480)
T ss_pred ceEeeecCchHHHHHHHcCC
Confidence 999999876553 3445554
No 157
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.01 E-value=1.6e-05 Score=69.17 Aligned_cols=79 Identities=20% Similarity=0.466 Sum_probs=63.8
Q ss_pred eEEEEcCCCCCCCHHHH------HHHHhhcCceeEEeeCCCCCCC-CCCcEE--EEEeCCHHHHHHHHHHhCCceecCeE
Q 015292 276 KAVYVKNLPRNVTQDQL------KKLFEHHGRITKVVVPPAKPGQ-EKNRIG--FVHFAERSSAMKALKNTEKYELDGQA 346 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L------~~~F~~~G~v~~v~i~~~~~~~-~~~g~a--fV~F~~~e~A~~A~~~l~~~~~~g~~ 346 (409)
.-+||-+||+.+..+++ .++|.+||.|..|.|-+..... +-.+.+ ||+|.+.++|.+||...+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 56899999988866552 5799999999999887654211 111323 99999999999999999999999999
Q ss_pred EEEEecCC
Q 015292 347 LECSLAKP 354 (409)
Q Consensus 347 l~v~~a~~ 354 (409)
|+..|...
T Consensus 195 lkatYGTT 202 (480)
T COG5175 195 LKATYGTT 202 (480)
T ss_pred EeeecCch
Confidence 99999864
No 158
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.95 E-value=2.6e-06 Score=76.24 Aligned_cols=138 Identities=22% Similarity=0.384 Sum_probs=106.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCc-cCCceEEEeeccc
Q 015292 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE-FKGKKIRCSTSQA 180 (409)
Q Consensus 102 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~-~~g~~l~v~~~~~ 180 (409)
+.+||+||.+.++..+|..+|...---.+-.++. -.||+||...+..-|.+|++.+++.. +.|+++.|..+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999997641111111111 26799999999999999999999875 8999999988765
Q ss_pred c----cccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCc
Q 015292 181 K----YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF 250 (409)
Q Consensus 181 ~----~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~ 250 (409)
+ +.+.|.|+|+...++.|..++..+|. +.+|..+.. ..-.-..-|+|.+.+.+..++..+++..+
T Consensus 76 kkqrsrk~Qirnippql~wevld~Ll~qyg~-ve~~eqvnt----~~etavvnvty~~~~~~~~ai~kl~g~Q~ 144 (584)
T KOG2193|consen 76 KKQRSRKIQIRNIPPQLQWEVLDSLLAQYGT-VENCEQVNT----DSETAVVNVTYSAQQQHRQAIHKLNGPQL 144 (584)
T ss_pred HHHHhhhhhHhcCCHHHHHHHHHHHHhccCC-HhHhhhhcc----chHHHHHHHHHHHHHHHHHHHHhhcchHh
Confidence 4 56899999999999999999999998 777655322 11112233677888888889988887644
No 159
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.85 E-value=5.2e-05 Score=68.37 Aligned_cols=83 Identities=19% Similarity=0.238 Sum_probs=62.7
Q ss_pred cceecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCC---CCC---CCC-------CcEEEEE
Q 015292 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPA---KPG---QEK-------NRIGFVH 323 (409)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~---~~~---~~~-------~g~afV~ 323 (409)
-+|....+-........++++|.+.|||.+-.-+.|.++|+.+|.|..|+|... ... ..+ +-+|||+
T Consensus 213 kKVrRisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvE 292 (484)
T KOG1855|consen 213 KKVRRISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVE 292 (484)
T ss_pred ceeeecCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhh
Confidence 334433333333333456799999999999999999999999999999999876 211 111 3479999
Q ss_pred eCCHHHHHHHHHHhCC
Q 015292 324 FAERSSAMKALKNTEK 339 (409)
Q Consensus 324 F~~~e~A~~A~~~l~~ 339 (409)
|...+.|.+|.+.|+.
T Consensus 293 ye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 293 YEEVEAARKARELLNP 308 (484)
T ss_pred hhhhHHHHHHHHhhch
Confidence 9999999999998863
No 160
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=7.2e-05 Score=69.72 Aligned_cols=76 Identities=26% Similarity=0.344 Sum_probs=63.7
Q ss_pred eEEEEcCCCCCC--C----HHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceec-CeEEE
Q 015292 276 KAVYVKNLPRNV--T----QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD-GQALE 348 (409)
Q Consensus 276 ~~l~V~nLp~~~--t----~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~-g~~l~ 348 (409)
.+|+|-|+|--- . ...|..+|+++|+|..+.++.+..++. +||.|++|.+..+|..|+..|||..|+ .+++.
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggt-kG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGT-KGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCe-eeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 789999998422 2 234578899999999999999998885 899999999999999999999999986 56667
Q ss_pred EEec
Q 015292 349 CSLA 352 (409)
Q Consensus 349 v~~a 352 (409)
|..-
T Consensus 138 v~~f 141 (698)
T KOG2314|consen 138 VRLF 141 (698)
T ss_pred eehh
Confidence 6543
No 161
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.81 E-value=1.2e-05 Score=71.33 Aligned_cols=79 Identities=24% Similarity=0.525 Sum_probs=72.3
Q ss_pred CeEE-EcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeeccc
Q 015292 102 SEVY-IGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (409)
Q Consensus 102 ~~l~-v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 180 (409)
.++| |+||+..++.++|+.+|..+|.|..+++..+..++.++|+|||.|.+...+..++.. ....+.++++.+....+
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEP 263 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCC
Confidence 4455 999999999999999999999999999999999999999999999999999999976 78889999999988765
Q ss_pred c
Q 015292 181 K 181 (409)
Q Consensus 181 ~ 181 (409)
.
T Consensus 264 ~ 264 (285)
T KOG4210|consen 264 R 264 (285)
T ss_pred C
Confidence 4
No 162
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.76 E-value=1.7e-05 Score=66.54 Aligned_cols=71 Identities=18% Similarity=0.411 Sum_probs=60.7
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCC--------CCCCc----EEEEEeCCHHHHHHHHHHhCCceec
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG--------QEKNR----IGFVHFAERSSAMKALKNTEKYELD 343 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~--------~~~~g----~afV~F~~~e~A~~A~~~l~~~~~~ 343 (409)
-.||++|||+.+....|+++|+.||.|-+|.|-+.... +.+++ -|+|+|.+...|.++...|||..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 48999999999999999999999999999999776543 11122 3789999999999999999999999
Q ss_pred CeE
Q 015292 344 GQA 346 (409)
Q Consensus 344 g~~ 346 (409)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 864
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.71 E-value=0.00012 Score=47.09 Aligned_cols=52 Identities=23% Similarity=0.464 Sum_probs=42.3
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHH
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~ 334 (409)
+.|-|.+.+.+..+ .|...|..||.|..+.+... ..+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 56889999877654 45558889999999999732 368999999999999985
No 164
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.70 E-value=0.00011 Score=47.28 Aligned_cols=52 Identities=19% Similarity=0.478 Sum_probs=43.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHH
Q 015292 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160 (409)
Q Consensus 102 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~ 160 (409)
+.|-|.+.|++..+. |..+|..||+|..+.+.. .....||.|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 678899999887654 555999999999988852 3558999999999999985
No 165
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.62 E-value=0.0002 Score=67.29 Aligned_cols=82 Identities=16% Similarity=0.217 Sum_probs=67.2
Q ss_pred CCCccceEEEEcCCCCCCCHHHHHHHHh-hcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCcee---cCe
Q 015292 270 SGASQVKAVYVKNLPRNVTQDQLKKLFE-HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL---DGQ 345 (409)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~---~g~ 345 (409)
+....++.|+|.||-..+|.-+|+.++. ..|.|....|-+- +..|||.|.+.++|.+.+.+|||..+ +++
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 4455678999999999999999999998 5666766633222 36799999999999999999999887 579
Q ss_pred EEEEEecCCCCc
Q 015292 346 ALECSLAKPQAD 357 (409)
Q Consensus 346 ~l~v~~a~~~~~ 357 (409)
.|.+.|+.....
T Consensus 513 ~L~adf~~~del 524 (718)
T KOG2416|consen 513 HLIADFVRADEL 524 (718)
T ss_pred eeEeeecchhHH
Confidence 999999876544
No 166
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.59 E-value=0.00065 Score=57.38 Aligned_cols=77 Identities=26% Similarity=0.424 Sum_probs=61.8
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCC----ceecCeEEEEEe
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK----YELDGQALECSL 351 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~----~~~~g~~l~v~~ 351 (409)
..|+|.||...++.+.|.+.|+.||.|....+..|..+.. .+-++|.|...-.|.+|+..++- ....+++.-|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~-t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKP-TREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccc-cccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 4699999999999999999999999999877777766655 57899999999999999998752 233456666654
Q ss_pred cC
Q 015292 352 AK 353 (409)
Q Consensus 352 a~ 353 (409)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 43
No 167
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.59 E-value=5.8e-05 Score=66.06 Aligned_cols=78 Identities=15% Similarity=0.354 Sum_probs=70.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccC--CeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 102 SEVYIGGIPHDASEHDLRDFCQSIG--EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 102 ~~l~v~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
-.+||+||-|.+|.++|.+.+...| .+..++++.++..|.+||||.|...+..+.++.++.|-...|+|+.-.|....
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 4689999999999999999998877 57888999999999999999999999999999999999999999887775443
No 168
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.53 E-value=0.00058 Score=50.10 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=51.5
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEe-eCCCCC------CCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeE-E
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVV-VPPAKP------GQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA-L 347 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-i~~~~~------~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~-l 347 (409)
+-|.|-+.|+. ....|.+.|++||.|.... +.++.. ......+..|+|.++.+|.+||.. ||..|.|.. +
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEE
Confidence 56888899888 5567788999999988764 222110 011136899999999999999994 999998854 4
Q ss_pred EEEecCC
Q 015292 348 ECSLAKP 354 (409)
Q Consensus 348 ~v~~a~~ 354 (409)
-|.+.++
T Consensus 85 GV~~~~~ 91 (100)
T PF05172_consen 85 GVKPCDP 91 (100)
T ss_dssp EEEE-HH
T ss_pred EEEEcHH
Confidence 5777643
No 169
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00042 Score=64.84 Aligned_cols=77 Identities=21% Similarity=0.314 Sum_probs=62.1
Q ss_pred CCCCeEEEcCCCCC--CCHH----HHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccC-Cc
Q 015292 99 PHGSEVYIGGIPHD--ASEH----DLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK-GK 171 (409)
Q Consensus 99 ~~~~~l~v~nLp~~--~t~~----~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~-g~ 171 (409)
.-.+.|+|-|+|-= ...+ -|..+|+++|+|+.+.+..+.. |.++||.|++|.+..+|..|++.|||..|. .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 34578999999953 2233 3567899999999999888866 459999999999999999999999999875 45
Q ss_pred eEEEe
Q 015292 172 KIRCS 176 (409)
Q Consensus 172 ~l~v~ 176 (409)
++.|.
T Consensus 135 tf~v~ 139 (698)
T KOG2314|consen 135 TFFVR 139 (698)
T ss_pred eEEee
Confidence 55654
No 170
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.37 E-value=0.0001 Score=62.16 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=52.8
Q ss_pred HHHHHHHh-hcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCC
Q 015292 290 DQLKKLFE-HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (409)
Q Consensus 290 ~~L~~~F~-~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (409)
++|...|+ +||.|..+.|-.+-.... +|-++|.|...++|++|+..|||..|.|++|...+..-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl-~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHL-VGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhh-hhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 45555555 899999997766544433 68899999999999999999999999999999988754
No 171
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.32 E-value=0.00022 Score=64.38 Aligned_cols=68 Identities=26% Similarity=0.390 Sum_probs=57.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeC---CCC--CCc--------eeeEEEEecCHHHHHHHHHHhCCC
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG---KDS--SEN--------KGFAFVTFRNVELASKAIDKLNNT 166 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~---~~~--g~~--------~g~afV~F~~~~~A~~a~~~l~~~ 166 (409)
.+++|.+.|||.+-.-+-|.++|..+|.|..|+|+.. ... +.. +-+|+|+|...+.|.+|.+.++..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6799999999999999999999999999999999876 222 222 346999999999999999887654
Q ss_pred c
Q 015292 167 E 167 (409)
Q Consensus 167 ~ 167 (409)
.
T Consensus 310 ~ 310 (484)
T KOG1855|consen 310 Q 310 (484)
T ss_pred h
Confidence 4
No 172
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.31 E-value=0.0011 Score=51.58 Aligned_cols=73 Identities=22% Similarity=0.330 Sum_probs=52.5
Q ss_pred CCCCeEEEcCCCCC-----CCHH----HHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccC
Q 015292 99 PHGSEVYIGGIPHD-----ASEH----DLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (409)
Q Consensus 99 ~~~~~l~v~nLp~~-----~t~~----~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~ 169 (409)
|...||.|.=+.++ .-.+ +|.+.|..||.|.-||++.+ .-||+|.+-.+|.+|+ .++|..+.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEEC
Confidence 34566666655521 2222 57788999999998888754 6999999999999999 58999999
Q ss_pred CceEEEeeccc
Q 015292 170 GKKIRCSTSQA 180 (409)
Q Consensus 170 g~~l~v~~~~~ 180 (409)
|+.|+|....+
T Consensus 96 g~~l~i~LKtp 106 (146)
T PF08952_consen 96 GRTLKIRLKTP 106 (146)
T ss_dssp TEEEEEEE---
T ss_pred CEEEEEEeCCc
Confidence 99999987654
No 173
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.29 E-value=0.00073 Score=58.01 Aligned_cols=65 Identities=22% Similarity=0.308 Sum_probs=52.0
Q ss_pred HHHHHHHHhhcCceeEEeeCCCCCCCCCC-cEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 289 QDQLKKLFEHHGRITKVVVPPAKPGQEKN-RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 289 ~~~L~~~F~~~G~v~~v~i~~~~~~~~~~-g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
+.+++.-+.+||.|.+|.|.......... ---||+|...++|.+|+-.|||+.|+||.+...|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 35678899999999998887664221111 237999999999999999999999999999887754
No 174
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.0012 Score=61.50 Aligned_cols=64 Identities=28% Similarity=0.343 Sum_probs=59.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh-ccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHH
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQ-SIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~ 162 (409)
...+|||||+||--++..+|..+|. -||.|..+-|=.|+.-+.++|.|-|.|.+..+-.+||.+
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 3578999999999999999999999 699999999999977789999999999999999999964
No 175
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.26 E-value=0.0016 Score=50.72 Aligned_cols=57 Identities=26% Similarity=0.434 Sum_probs=46.4
Q ss_pred HHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCC
Q 015292 290 DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (409)
Q Consensus 290 ~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (409)
..|.+.|..||.|.-|++.- +.-+|+|.+-.+|.+|+. |+|..++|+.|+|++..+.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 36778889999999888875 458999999999999998 8999999999999998774
No 176
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.22 E-value=0.00071 Score=60.46 Aligned_cols=77 Identities=22% Similarity=0.302 Sum_probs=63.5
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCC---CCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE---KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~---~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
..|.|.||.+.++.++++.+|.-.|.|..+.|+...+... ....|||.|.+...+..|.. |.++.|-++.|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 4799999999999999999999999999999987553321 23589999999999988877 7777888888777654
Q ss_pred C
Q 015292 353 K 353 (409)
Q Consensus 353 ~ 353 (409)
-
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 177
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.17 E-value=0.0017 Score=47.70 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=51.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCC-------CCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceE
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGK-------DSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~-------~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l 173 (409)
.+.|.|-+.|+. ....|..+|++||.|.+..-.... ..-.......|+|.++.+|.+||. .||..|.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 577999999998 556788999999999877511000 001124578899999999999995 79999988655
Q ss_pred -EEeecc
Q 015292 174 -RCSTSQ 179 (409)
Q Consensus 174 -~v~~~~ 179 (409)
-|.++.
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 455553
No 178
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.11 E-value=0.00086 Score=63.20 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=64.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh-ccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCcc---CCceEE
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQ-SIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF---KGKKIR 174 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~---~g~~l~ 174 (409)
+.+..|+|.||-.-.|..+|+.++. .+|.|...+| |+ -+..|||.|.+.++|.....+|||..| +++.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 3567899999999999999999999 5677777743 33 377899999999999999999999998 578898
Q ss_pred Eeecccc
Q 015292 175 CSTSQAK 181 (409)
Q Consensus 175 v~~~~~~ 181 (409)
+.|....
T Consensus 516 adf~~~d 522 (718)
T KOG2416|consen 516 ADFVRAD 522 (718)
T ss_pred eeecchh
Confidence 8887643
No 179
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.04 E-value=0.00033 Score=59.21 Aligned_cols=63 Identities=27% Similarity=0.405 Sum_probs=52.6
Q ss_pred HHHHHHHh-ccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 116 HDLRDFCQ-SIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 116 ~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
++|...|. +||+|..+++..+.. -.-.|-+||.|...++|.+|++.||+..+.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34555555 899999998766543 4568899999999999999999999999999999987764
No 180
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.80 E-value=0.004 Score=53.64 Aligned_cols=63 Identities=30% Similarity=0.430 Sum_probs=50.5
Q ss_pred HHHHHHHHhccCCeeEEEEeeCCCCCC-ceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 115 EHDLRDFCQSIGEVTEVRIMKGKDSSE-NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 115 ~~~l~~~f~~~G~v~~v~i~~~~~~g~-~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+++++.-+.+||.|..|.|...+.--. ..--.||+|...++|.+|+-.|||.+|+||.+...+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 346788899999999999887643211 122489999999999999999999999999987654
No 181
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.74 E-value=0.0087 Score=41.56 Aligned_cols=54 Identities=19% Similarity=0.309 Sum_probs=42.3
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~ 338 (409)
..++|. .|..+-..+|.++|++||.| .|..+.+ ..|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 566676 99999999999999999996 4666654 479999999999999998876
No 182
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.53 E-value=0.012 Score=40.85 Aligned_cols=56 Identities=18% Similarity=0.335 Sum_probs=41.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCC
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN 165 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~ 165 (409)
....+|. .|..+...+|.++|+.||.|. |..+. ...|||...+.+.|..++..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~-------dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIN-------DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEEC-------TTEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEc-------CCcEEEEeecHHHHHHHHHHhcc
Confidence 3445555 999999999999999999985 44433 33799999999999999987753
No 183
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.45 E-value=0.0077 Score=49.69 Aligned_cols=81 Identities=10% Similarity=0.067 Sum_probs=52.0
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhh-cCce---eEEe--eCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecC-----
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEH-HGRI---TKVV--VPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG----- 344 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~-~G~v---~~v~--i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g----- 344 (409)
.+|.||+||+.+|++++...++. ++.. ..+. ..........-.-|||.|.+.+++..-+..++|+.|-+
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~ 87 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNE 87 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-E
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCC
Confidence 68999999999999999997776 5554 2333 22111111112469999999999999999999988742
Q ss_pred eEEEEEecCCCC
Q 015292 345 QALECSLAKPQA 356 (409)
Q Consensus 345 ~~l~v~~a~~~~ 356 (409)
.+..|.+|.-+.
T Consensus 88 ~~~~VE~Apyqk 99 (176)
T PF03467_consen 88 YPAVVEFAPYQK 99 (176)
T ss_dssp EEEEEEE-SS--
T ss_pred cceeEEEcchhc
Confidence 456778876533
No 184
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.38 E-value=0.023 Score=37.45 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=44.7
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhc----CceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHh
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHH----GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~----G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l 337 (409)
..|+|+|+. .++.++|+.+|..| + ...|..+-|. .|=|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 579999994 68999999999999 4 4578888764 5789999999999999865
No 185
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.34 E-value=0.022 Score=43.80 Aligned_cols=72 Identities=21% Similarity=0.325 Sum_probs=56.0
Q ss_pred cceEEEEcCCCCCC----CHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015292 274 QVKAVYVKNLPRNV----TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (409)
Q Consensus 274 ~~~~l~V~nLp~~~----t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v 349 (409)
+-.+|.|+=|..++ +-..|...++.||+|.+|.+.- |-.|.|.|.+..+|-+|+.+++. ...|..+.+
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 34688887666555 3344556678999999998853 35799999999999999999876 677899999
Q ss_pred EecC
Q 015292 350 SLAK 353 (409)
Q Consensus 350 ~~a~ 353 (409)
+|-.
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 8864
No 186
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.14 E-value=0.018 Score=47.62 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=47.4
Q ss_pred CHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhC--CceecCeEEEEEecCCCC
Q 015292 288 TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGQALECSLAKPQA 356 (409)
Q Consensus 288 t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~--~~~~~g~~l~v~~a~~~~ 356 (409)
....|+.+|..|+.+..+.+++.- +-..|.|.+.++|.+|...|+ +..+.|..|+|.|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 457899999999998887777653 568999999999999999999 999999999999996544
No 187
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.07 E-value=0.0059 Score=50.36 Aligned_cols=73 Identities=21% Similarity=0.301 Sum_probs=47.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhc-cCCe---eEEEEeeCCCC--CCceeeEEEEecCHHHHHHHHHHhCCCccCCce
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQS-IGEV---TEVRIMKGKDS--SENKGFAFVTFRNVELASKAIDKLNNTEFKGKK 172 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~-~G~v---~~v~i~~~~~~--g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~ 172 (409)
....|.|++||+++|++++.+.++. ++.- ..+.-.....+ -....-|||.|.+.+++......++|..|...+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 4568999999999999999997777 6654 33432222111 122345999999999999999999998875433
No 188
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.00 E-value=0.042 Score=42.36 Aligned_cols=73 Identities=19% Similarity=0.314 Sum_probs=54.8
Q ss_pred CCCCeEEEcCCCCCC----CHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 015292 99 PHGSEVYIGGIPHDA----SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~----t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 174 (409)
+.-.||.|+=|..++ +...|...++.||+|.+|.+.- +..|.|.|.+..+|-+|+.+... ...|..+.
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 345678887666554 3344667788999999998863 45799999999999999987665 56677777
Q ss_pred Eeecc
Q 015292 175 CSTSQ 179 (409)
Q Consensus 175 v~~~~ 179 (409)
+.+-+
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 76543
No 189
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.93 E-value=0.0028 Score=62.90 Aligned_cols=79 Identities=14% Similarity=0.270 Sum_probs=66.7
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
.+++||++||+..+++.+|+..|..+|.|..|.|-..+-+.-+ -||||.|-+...+-.|...+.+..|....+++.+..
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~es-a~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTES-AYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCccc-chhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 3689999999999999999999999999999998766544332 599999999999999999999888876666666664
No 190
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.80 E-value=0.012 Score=49.94 Aligned_cols=76 Identities=17% Similarity=0.231 Sum_probs=62.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCcc----CCceEEEee
Q 015292 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF----KGKKIRCST 177 (409)
Q Consensus 102 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~----~g~~l~v~~ 177 (409)
..|+|.||+.-++.+.|...|+.||+|....++.|. .++..+-++|.|...-.|.+|+..+...-| .++..-|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 679999999999999999999999999988887774 488889999999999999999988754433 345555544
Q ss_pred c
Q 015292 178 S 178 (409)
Q Consensus 178 ~ 178 (409)
.
T Consensus 111 ~ 111 (275)
T KOG0115|consen 111 M 111 (275)
T ss_pred h
Confidence 3
No 191
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.70 E-value=0.0029 Score=55.97 Aligned_cols=82 Identities=21% Similarity=0.391 Sum_probs=64.1
Q ss_pred CCCeEEEcCCCCCCCHHHHH---HHHhccCCeeEEEEeeCCC--CC-CceeeEEEEecCHHHHHHHHHHhCCCccCCceE
Q 015292 100 HGSEVYIGGIPHDASEHDLR---DFCQSIGEVTEVRIMKGKD--SS-ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~--~g-~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l 173 (409)
...-+||-+|+..+..+.+. .+|.+||.|..|.+.++.. .+ ..-..+||+|...++|..||...+|..+.|+.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 44668999999887655543 5899999999999888652 11 112249999999999999999999999999998
Q ss_pred EEeecccc
Q 015292 174 RCSTSQAK 181 (409)
Q Consensus 174 ~v~~~~~~ 181 (409)
+..+...+
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 88776544
No 192
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=0.057 Score=51.33 Aligned_cols=78 Identities=18% Similarity=0.267 Sum_probs=60.5
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHhcc----CCeeEEEEeeCCC----------CCC----------------------
Q 015292 99 PHGSEVYIGGIPHD-ASEHDLRDFCQSI----GEVTEVRIMKGKD----------SSE---------------------- 141 (409)
Q Consensus 99 ~~~~~l~v~nLp~~-~t~~~l~~~f~~~----G~v~~v~i~~~~~----------~g~---------------------- 141 (409)
..+++|-|.|+.|+ +...+|.-+|+.| |.|.+|.|+.... .|.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 45689999999998 8999999999887 5899998865322 111
Q ss_pred ---------------ceeeEEEEecCHHHHHHHHHHhCCCccC--CceEEEe
Q 015292 142 ---------------NKGFAFVTFRNVELASKAIDKLNNTEFK--GKKIRCS 176 (409)
Q Consensus 142 ---------------~~g~afV~F~~~~~A~~a~~~l~~~~~~--g~~l~v~ 176 (409)
..-||.|+|.+.+.|....+.++|..|. +..|.+.
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLR 303 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLR 303 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeee
Confidence 1237899999999999999999999886 3444443
No 193
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.65 E-value=0.077 Score=34.99 Aligned_cols=54 Identities=20% Similarity=0.331 Sum_probs=43.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcc---CCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHh
Q 015292 102 SEVYIGGIPHDASEHDLRDFCQSI---GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163 (409)
Q Consensus 102 ~~l~v~nLp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l 163 (409)
..|+|+++. +++.++|+.+|..| .....|..+-|. .|=|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 469999984 58889999999998 134577777653 5999999999999999754
No 194
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.52 E-value=0.063 Score=36.00 Aligned_cols=55 Identities=11% Similarity=0.187 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015292 286 NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (409)
Q Consensus 286 ~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v 349 (409)
.++-++|+..+..|+- .+|+.++ .|| ||.|.+..+|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5688999999999953 4455554 455 89999999999999999999888877764
No 195
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.36 E-value=0.035 Score=55.02 Aligned_cols=78 Identities=22% Similarity=0.237 Sum_probs=65.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCcee--cCeEEEEEecCCC
Q 015292 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL--DGQALECSLAKPQ 355 (409)
Q Consensus 278 l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~--~g~~l~v~~a~~~ 355 (409)
.++.|.+-..+-.-|-.+|+.||.|.+++.+++- ..|.|.|.+.+.|..|+.+|+|..+ -|-+.+|.+|+.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3444555567778899999999999999998875 6899999999999999999999876 5889999999987
Q ss_pred CccCCC
Q 015292 356 ADQKSA 361 (409)
Q Consensus 356 ~~~~~~ 361 (409)
....+.
T Consensus 375 ~~~ep~ 380 (1007)
T KOG4574|consen 375 PMYEPP 380 (1007)
T ss_pred ccccCC
Confidence 665443
No 196
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.35 E-value=0.0063 Score=53.87 Aligned_cols=80 Identities=23% Similarity=0.449 Sum_probs=62.1
Q ss_pred eEEEEcCCCCCCCHHHH---HHHHhhcCceeEEeeCCCCC--CCC-CCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015292 276 KAVYVKNLPRNVTQDQL---KKLFEHHGRITKVVVPPAKP--GQE-KNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L---~~~F~~~G~v~~v~i~~~~~--~~~-~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v 349 (409)
+-+||-+|+..+-.+.+ ...|.+||.|..|.+..+.. ... ...-++|+|...++|..||...+|..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 45778888877755444 36899999999999988762 111 1134899999999999999999999999999888
Q ss_pred EecCCC
Q 015292 350 SLAKPQ 355 (409)
Q Consensus 350 ~~a~~~ 355 (409)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 877653
No 197
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.34 E-value=0.2 Score=37.58 Aligned_cols=67 Identities=10% Similarity=0.070 Sum_probs=51.1
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcC-ceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecC
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g 344 (409)
..+.+-..|+-++..+|..+.+.+- .|..++|+++... ++-.+.++|.+..+|..-...+||..|+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p--nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP--NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC--ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4455555566667777877777665 4678999887644 35689999999999999999999999864
No 198
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.88 E-value=0.021 Score=52.83 Aligned_cols=75 Identities=19% Similarity=0.248 Sum_probs=62.3
Q ss_pred ceEEEEcCCCCCC-CHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 275 VKAVYVKNLPRNV-TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 275 ~~~l~V~nLp~~~-t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
.+.|-+.-+|+.+ +..+|...|.+||.|..|.|-... -.|.|+|.+..+|-.|.. .++..|++|.|+|.|-+
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 3566677777766 668999999999999999886541 368999999999988877 68999999999999998
Q ss_pred CCC
Q 015292 354 PQA 356 (409)
Q Consensus 354 ~~~ 356 (409)
+..
T Consensus 445 ps~ 447 (526)
T KOG2135|consen 445 PSP 447 (526)
T ss_pred CCc
Confidence 843
No 199
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.68 E-value=0.14 Score=47.35 Aligned_cols=68 Identities=9% Similarity=0.175 Sum_probs=59.4
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcC-ceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecC
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g 344 (409)
++.|+|-.+|..++..||..|+..|- .|.+|+|+++.... +-.++|+|.+.++|..-...+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn--rymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN--RYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc--eEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 68899999999999999999998775 47899999965444 4678999999999999999999999864
No 200
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.66 E-value=0.35 Score=36.30 Aligned_cols=68 Identities=19% Similarity=0.334 Sum_probs=49.3
Q ss_pred CCeEEEcCCC-CCCCHHHHHHHHhccC-CeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCC
Q 015292 101 GSEVYIGGIP-HDASEHDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (409)
Q Consensus 101 ~~~l~v~nLp-~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g 170 (409)
.++|.|--.| ..++.+.|..+.+.+- .|..++|+++. ..++-.+.++|.+...|......+||..+..
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3445444444 4556666766666653 57789999874 2366678999999999999999999988753
No 201
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.60 E-value=0.04 Score=53.27 Aligned_cols=74 Identities=19% Similarity=0.281 Sum_probs=64.6
Q ss_pred CCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015292 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (409)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v 349 (409)
...++..++||+||...+..+-++.+...+|.|.++.... |||..|..+..+.+|+..++-..++|..+.+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 3445568999999999999999999999999988777653 9999999999999999999999999988877
Q ss_pred Eec
Q 015292 350 SLA 352 (409)
Q Consensus 350 ~~a 352 (409)
...
T Consensus 106 ~~d 108 (668)
T KOG2253|consen 106 NVD 108 (668)
T ss_pred cch
Confidence 654
No 202
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.55 E-value=0.17 Score=44.19 Aligned_cols=70 Identities=23% Similarity=0.345 Sum_probs=53.0
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeE-EEEEecC
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA-LECSLAK 353 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~-l~v~~a~ 353 (409)
.=|.|-+.|+. .-..|..+|++||.|.+.....+ -.+-.|.|.+.-+|.+||.. ||+.|+|.. |-|....
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCT 268 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecC
Confidence 45667777765 34677889999999988776532 25899999999999999995 998888754 4555533
No 203
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.98 E-value=0.38 Score=33.30 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHhhcCc-----eeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 285 RNVTQDQLKKLFEHHGR-----ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 285 ~~~t~~~L~~~F~~~G~-----v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
..++..+|..++...+. |-.|.|.. .|+||+-.. +.|..++..|++..+.|++|+|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 46788888888877644 55677764 489999854 6888999999999999999999875
No 204
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.52 E-value=0.17 Score=47.99 Aligned_cols=69 Identities=19% Similarity=0.265 Sum_probs=56.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhc--cCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCC--ccCCceEEE
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQS--IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT--EFKGKKIRC 175 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~--~~~g~~l~v 175 (409)
..+.|.|+-||.++-.++|+.||+. |-++++|.+-.+. -=||+|.+..+|+.|.+.|... .|.|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 3567889999999999999999986 7789999886653 3799999999999999877643 477776643
No 205
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.50 E-value=0.17 Score=41.91 Aligned_cols=60 Identities=23% Similarity=0.288 Sum_probs=46.1
Q ss_pred CHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhC--CCccCCceEEEeecc
Q 015292 114 SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN--NTEFKGKKIRCSTSQ 179 (409)
Q Consensus 114 t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~--~~~~~g~~l~v~~~~ 179 (409)
....|+.+|..|+.+..+...+. -+-..|.|.+.+.|.+|...|+ +..+.|..++|.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 45789999999999988888765 4458999999999999999999 899999999998774
No 206
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.02 E-value=0.34 Score=44.92 Aligned_cols=70 Identities=23% Similarity=0.472 Sum_probs=59.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccC-CeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCC
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g 170 (409)
..++.|.|-.+|..+|..||..|+..+- .|..++|+++. -.++-.+.|.|.+..+|....+.+||..|..
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3378999999999999999999998764 68999999964 2345568899999999999999999998764
No 207
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.80 E-value=0.086 Score=48.90 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=61.2
Q ss_pred CCCeEEEcCCCCCC-CHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 100 HGSEVYIGGIPHDA-SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 100 ~~~~l~v~nLp~~~-t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
+.+.|-+.-.|+.. |-.+|..+|.+||.|..|.+-.. .-.|.|+|.+..+|-.|. ..++..|.+|.|+|.+-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEe
Confidence 34556666667663 66789999999999999988443 446999999999998888 57999999999999887
Q ss_pred cccc
Q 015292 179 QAKY 182 (409)
Q Consensus 179 ~~~~ 182 (409)
.+..
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 7643
No 208
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.86 E-value=0.11 Score=50.37 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=62.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...+|||+|+...+..+-++.++..+|-|.+++... |+|..|.....+..|+..++...+.|..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4568999999999999999999999999998877643 899999999999999999999999888877754
No 209
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.67 E-value=0.4 Score=45.62 Aligned_cols=68 Identities=15% Similarity=0.287 Sum_probs=53.8
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhh--cCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCC--ceecCeEEEEE
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEH--HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK--YELDGQALECS 350 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~--~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~--~~~~g~~l~v~ 350 (409)
+.|.++-||..+..++|+.||+. |.+++++.+-.+. -=||+|.+..+|+.|...|.. ..|.|++|...
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 67788999999999999999964 7788888876543 248999999999999987753 34667666443
No 210
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=91.55 E-value=0.21 Score=52.03 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=13.1
Q ss_pred EEcCCCCCCCHHHHHHHHhccC
Q 015292 105 YIGGIPHDASEHDLRDFCQSIG 126 (409)
Q Consensus 105 ~v~nLp~~~t~~~l~~~f~~~G 126 (409)
|+-..|. |-++|..++..+-
T Consensus 420 ftf~~P~--s~eel~~lL~~~~ 439 (840)
T PF04147_consen 420 FTFPCPS--SHEELLELLDGYS 439 (840)
T ss_pred ceecCCC--CHHHHHHHHhcCC
Confidence 4444444 6678888888764
No 211
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.51 E-value=0.82 Score=40.13 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=54.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceE-EEeecc
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI-RCSTSQ 179 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l-~v~~~~ 179 (409)
..-|-|-++|+... .-|-.+|.+||.|+..... ..-.+-+|.|.+.-+|.+||. .+|..|.|..+ =|..+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 46788889988744 3577899999999776553 234589999999999999995 69999988654 444443
No 212
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=91.01 E-value=2.3 Score=43.01 Aligned_cols=63 Identities=8% Similarity=0.148 Sum_probs=48.1
Q ss_pred CCCCCHHHHHHHHhhcCcee-----EEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCC
Q 015292 284 PRNVTQDQLKKLFEHHGRIT-----KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (409)
Q Consensus 284 p~~~t~~~L~~~F~~~G~v~-----~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (409)
-..++..+|-.++..-+.|. .|+|.. .|.||+-. ...|...+..|++..+.|++|.|..+...
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQLLGDA 563 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcC-hhhHHHHHHHhccccccCCceEEEECCCC
Confidence 35678888888776655443 566654 58999984 46688899999999999999999998643
No 213
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=90.71 E-value=0.12 Score=53.75 Aligned_cols=7 Identities=14% Similarity=0.240 Sum_probs=3.2
Q ss_pred HHHHHhc
Q 015292 118 LRDFCQS 124 (409)
Q Consensus 118 l~~~f~~ 124 (409)
|.++|+.
T Consensus 741 La~~Fk~ 747 (784)
T PF04931_consen 741 LAAIFKE 747 (784)
T ss_pred HHHHHHH
Confidence 3445544
No 214
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.18 E-value=0.49 Score=43.05 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=44.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCC-eeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHH
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGE-VTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~-v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~ 161 (409)
...|-|.++|.....++|...|+.|+. =..|+.+.+ -.||-.|.+...|..||-
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhh
Confidence 457999999999999999999999974 345555554 369999999999999994
No 215
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.00 E-value=1.8 Score=29.89 Aligned_cols=58 Identities=24% Similarity=0.452 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHhccC-----CeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 112 DASEHDLRDFCQSIG-----EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 112 ~~t~~~l~~~f~~~G-----~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
.++..+|..++...+ .|-.|.|..+ |+||+-... .|..++..|++..+.|++|.|..+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 477888888887764 3667777544 888887664 788899999999999999999764
No 216
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.85 E-value=0.24 Score=49.47 Aligned_cols=70 Identities=24% Similarity=0.377 Sum_probs=58.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCcc--CCceEEEeecc
Q 015292 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF--KGKKIRCSTSQ 179 (409)
Q Consensus 104 l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~--~g~~l~v~~~~ 179 (409)
..+.|.+-..+-..|..+|.+||.|.+++..++. ..|.|.|.+.+.|..|+++|+|..+ -|-+.+|.++.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 3455555667778899999999999999998874 3799999999999999999999875 57778887765
No 217
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=89.21 E-value=0.57 Score=37.92 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=59.0
Q ss_pred eEEEEcCCCCCCC-----HHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCe-EEEE
Q 015292 276 KAVYVKNLPRNVT-----QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ-ALEC 349 (409)
Q Consensus 276 ~~l~V~nLp~~~t-----~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~-~l~v 349 (409)
..+.+.+|+..+- ......+|..|-...-..+++.. ++.-|-|.+++.|..|...++.+.|.|. .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf------rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF------RRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh------ceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4577777776552 23445677777777767776643 5677999999999999999999999988 9999
Q ss_pred EecCCCCcc
Q 015292 350 SLAKPQADQ 358 (409)
Q Consensus 350 ~~a~~~~~~ 358 (409)
.|+.+....
T Consensus 85 yfaQ~~~~~ 93 (193)
T KOG4019|consen 85 YFAQPGHPE 93 (193)
T ss_pred EEccCCCcc
Confidence 999876553
No 218
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=89.19 E-value=2.8 Score=43.05 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=23.8
Q ss_pred ceeeEEEEecCHHHHHHHHHHhCCCccC
Q 015292 142 NKGFAFVTFRNVELASKAIDKLNNTEFK 169 (409)
Q Consensus 142 ~~g~afV~F~~~~~A~~a~~~l~~~~~~ 169 (409)
-+||-||+=.-..++..||+-+-+....
T Consensus 209 lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 209 LKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred cceeEEEEechhHHHHHHHhhhhhheec
Confidence 4999999999999999999887776655
No 219
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.96 E-value=3.4 Score=27.79 Aligned_cols=55 Identities=15% Similarity=0.243 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 015292 112 DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (409)
Q Consensus 112 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 175 (409)
.++-++|+..|+.|+-. +|..++ .| -||.|.+..+|.+|....++..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 47889999999999743 333442 22 589999999999999999999887776654
No 220
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=86.78 E-value=22 Score=31.54 Aligned_cols=61 Identities=11% Similarity=0.237 Sum_probs=48.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCC-------CCCceeeEEEEecCHHHHHHHH
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKD-------SSENKGFAFVTFRNVELASKAI 160 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-------~g~~~g~afV~F~~~~~A~~a~ 160 (409)
..|.|...|+..+++-..+...|-+||+|++|.++.+.. .-.......+.|-+.+.+....
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFY 81 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFY 81 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHH
Confidence 357799999999999999999999999999999998751 1233467889999988765443
No 221
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=86.61 E-value=2.5 Score=43.28 Aligned_cols=7 Identities=43% Similarity=0.695 Sum_probs=2.6
Q ss_pred CCCccEE
Q 015292 222 SNNRGFA 228 (409)
Q Consensus 222 ~~~~g~~ 228 (409)
++.++|+
T Consensus 899 g~q~~~~ 905 (1282)
T KOG0921|consen 899 GTQRKFA 905 (1282)
T ss_pred cchhhcc
Confidence 3333333
No 222
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.43 E-value=3.8 Score=39.54 Aligned_cols=82 Identities=21% Similarity=0.283 Sum_probs=63.7
Q ss_pred ccceEEEEcCCCCC-CCHHHHHHHHhhc----CceeEEeeCCCCCC----------------------------------
Q 015292 273 SQVKAVYVKNLPRN-VTQDQLKKLFEHH----GRITKVVVPPAKPG---------------------------------- 313 (409)
Q Consensus 273 ~~~~~l~V~nLp~~-~t~~~L~~~F~~~----G~v~~v~i~~~~~~---------------------------------- 313 (409)
..+++|-|.|+.|+ +...+|.-+|+.| |.|.+|.|.+...|
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 34589999999975 5889999999876 57999998775422
Q ss_pred -------------CCCCcEEEEEeCCHHHHHHHHHHhCCceec--CeEEEEEecCC
Q 015292 314 -------------QEKNRIGFVHFAERSSAMKALKNTEKYELD--GQALECSLAKP 354 (409)
Q Consensus 314 -------------~~~~g~afV~F~~~e~A~~A~~~l~~~~~~--g~~l~v~~a~~ 354 (409)
+..--||.|+|.+++.|.+.....+|..|. +..|-+.|...
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPD 307 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPD 307 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCC
Confidence 011137999999999999999999999986 56677777654
No 223
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=84.52 E-value=1.3 Score=31.64 Aligned_cols=56 Identities=20% Similarity=0.379 Sum_probs=40.9
Q ss_pred EEEEecCHHHHHHHHHHhCCC--ccCCceEEE---------------eecccccccccCCCCCCCChHHHHHHH
Q 015292 146 AFVTFRNVELASKAIDKLNNT--EFKGKKIRC---------------STSQAKYRLFIGNIPRNWGSEDLQKVV 202 (409)
Q Consensus 146 afV~F~~~~~A~~a~~~l~~~--~~~g~~l~v---------------~~~~~~~~l~v~~l~~~~~~~~l~~~f 202 (409)
|.|+|....-|++.++. ... .+.++.+.| ....+++++.+.|||...+++.|++.+
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 68999999999999853 322 244444444 333467889999999999999888753
No 224
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=79.55 E-value=1.3 Score=31.74 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=41.4
Q ss_pred EEEEeCCHHHHHHHHHHhcCCCccCCCCCcceecCCCCCCC-----CCCCccceEEEEcCCCCCCCHHHHHHHH
Q 015292 228 AFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD-----SSGASQVKAVYVKNLPRNVTQDQLKKLF 296 (409)
Q Consensus 228 ~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~V~nLp~~~t~~~L~~~F 296 (409)
|.|+|.....|+..++.-. ..+.+....+.+......... -......++|.|.|||..++++.|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~-~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKK-HPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCE-EEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 5789999888887776432 233334433333322211111 1222334789999999999999998765
No 225
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=77.53 E-value=3.4 Score=37.13 Aligned_cols=14 Identities=14% Similarity=0.164 Sum_probs=9.7
Q ss_pred CCCCCccCCccccc
Q 015292 394 GFGAAAFAQVRRCV 407 (409)
Q Consensus 394 g~g~~~~~~p~~~~ 407 (409)
+.|+++|+||..++
T Consensus 378 ~GGGggyqqp~~~~ 391 (465)
T KOG3973|consen 378 RGGGGGYQQPQQQQ 391 (465)
T ss_pred CCCCCCCcCchhhh
Confidence 33456899998765
No 226
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=74.39 E-value=2.1 Score=32.55 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=28.7
Q ss_pred eEEEEcCCCCC---------CCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHH
Q 015292 276 KAVYVKNLPRN---------VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329 (409)
Q Consensus 276 ~~l~V~nLp~~---------~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~ 329 (409)
.++.|.|++.. ++.+.|++.|+.|..+. ++.+.+..+. +|+++|.|.+.-.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh--~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGH--TGFAIVEFNKDWS 68 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEE--EEEEEEE--SSHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCC--cEEEEEEECCChH
Confidence 36777888653 35689999999998864 6666666543 4899999977544
No 227
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=74.26 E-value=0.51 Score=44.93 Aligned_cols=70 Identities=14% Similarity=0.206 Sum_probs=53.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCC
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g 170 (409)
.++||++|++++++-.+|..+++.+--+..+-+.....-.....+.||.|+---...-|+.+||+..+.-
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 5789999999999999999999998777777665544334567789999987666666666667665543
No 228
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=73.76 E-value=7 Score=34.49 Aligned_cols=81 Identities=15% Similarity=0.287 Sum_probs=60.9
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCC-------CCCCCcEEEEEeCCHHHHHH----HHHHhC--Cc
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP-------GQEKNRIGFVHFAERSSAMK----ALKNTE--KY 340 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-------~~~~~g~afV~F~~~e~A~~----A~~~l~--~~ 340 (409)
.++.|.+.|+..+++--.+...|-+||+|++|+++.+.+ .........+-|-+.+.+.. .++.|. ..
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999998771 11123567899988887643 333343 23
Q ss_pred eecCeEEEEEecCC
Q 015292 341 ELDGQALECSLAKP 354 (409)
Q Consensus 341 ~~~g~~l~v~~a~~ 354 (409)
.+....|.|.|..-
T Consensus 94 ~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 94 KLKSESLTLSFVSL 107 (309)
T ss_pred hcCCcceeEEEEEE
Confidence 56788898888764
No 229
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=73.55 E-value=3 Score=40.75 Aligned_cols=8 Identities=50% Similarity=0.481 Sum_probs=2.9
Q ss_pred chhhHHhh
Q 015292 83 EDEDEKKK 90 (409)
Q Consensus 83 ~~~~~~~~ 90 (409)
++.++..+
T Consensus 981 EDwdele~ 988 (1001)
T COG5406 981 EDWDELES 988 (1001)
T ss_pred cchhhHhh
Confidence 33333333
No 230
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=72.67 E-value=1.8 Score=42.86 Aligned_cols=16 Identities=13% Similarity=0.306 Sum_probs=6.4
Q ss_pred EEEeCCHHHHHHHHHH
Q 015292 321 FVHFAERSSAMKALKN 336 (409)
Q Consensus 321 fV~F~~~e~A~~A~~~ 336 (409)
||...+.++-..|.+.
T Consensus 625 FcsImsaeDyiDAFEk 640 (822)
T KOG2141|consen 625 FCSIMSAEDYIDAFEK 640 (822)
T ss_pred eeeeecchHHHHHHHH
Confidence 3333344444444443
No 231
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=71.75 E-value=3.7 Score=33.41 Aligned_cols=74 Identities=20% Similarity=0.269 Sum_probs=55.5
Q ss_pred CeEEEcCCCCCCCH-----HHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCc-eEEE
Q 015292 102 SEVYIGGIPHDASE-----HDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGK-KIRC 175 (409)
Q Consensus 102 ~~l~v~nLp~~~t~-----~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~-~l~v 175 (409)
+++.+.+++..+-. .....+|.+|-+..-..+++. .+..-|.|.+++.|..|.-.++...|.|. .+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 56788888766322 234567787777666666553 56788999999999999999999999988 7777
Q ss_pred eecccc
Q 015292 176 STSQAK 181 (409)
Q Consensus 176 ~~~~~~ 181 (409)
.++++.
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 777654
No 232
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=71.43 E-value=2.9 Score=36.25 Aligned_cols=35 Identities=29% Similarity=0.567 Sum_probs=27.1
Q ss_pred eEEEEcCCCCC------------CCHHHHHHHHhhcCceeEEeeCCC
Q 015292 276 KAVYVKNLPRN------------VTQDQLKKLFEHHGRITKVVVPPA 310 (409)
Q Consensus 276 ~~l~V~nLp~~------------~t~~~L~~~F~~~G~v~~v~i~~~ 310 (409)
.+|++-+||-. .++..|+..|..||.|..|.|+.-
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipic 196 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPIC 196 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCccc
Confidence 46777766632 367889999999999999998753
No 233
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=69.40 E-value=17 Score=31.87 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=36.5
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCcee-EEeeCCCCCCCCCCcEEEEEeCCHH
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRIT-KVVVPPAKPGQEKNRIGFVHFAERS 328 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~-~v~i~~~~~~~~~~g~afV~F~~~e 328 (409)
..-|+++||+.++...+|+..+.+.+.+- ++..-- .+|-||++|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCcc
Confidence 36799999999999999999999887532 333321 1478999998754
No 234
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=67.27 E-value=7 Score=34.18 Aligned_cols=48 Identities=15% Similarity=0.224 Sum_probs=36.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCe-eEEEEeeCCCCCCceeeEEEEecCHH
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEV-TEVRIMKGKDSSENKGFAFVTFRNVE 154 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v-~~v~i~~~~~~g~~~g~afV~F~~~~ 154 (409)
.+-|+|+|||.++...+|+..+.+-|.+ .++... ...|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCcc
Confidence 3559999999999999999999987743 344332 24778999997753
No 235
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=66.26 E-value=8.1 Score=31.39 Aligned_cols=57 Identities=26% Similarity=0.299 Sum_probs=40.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCC-CCceeeEEEEecCHHHHHHHHHH
Q 015292 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS-SENKGFAFVTFRNVELASKAIDK 162 (409)
Q Consensus 102 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-g~~~g~afV~F~~~~~A~~a~~~ 162 (409)
+++|.. |.+...++|..+-+ |.+..|.+.+..+. ...+|..||.|.+.+.|..+++.
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 566666 33444444555544 78888888766431 26789999999999999998864
No 236
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=66.13 E-value=12 Score=25.25 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=45.8
Q ss_pred HHHHHHHhccC-CeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeeccc
Q 015292 116 HDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (409)
Q Consensus 116 ~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 180 (409)
.+|.+-|..+| ++..+.-+..+.++.....-+|+.....+-.. .++=..|+|+++.|.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46888899988 78888888887777777788888876543333 2455568899999987654
No 237
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=64.97 E-value=0.89 Score=43.36 Aligned_cols=73 Identities=14% Similarity=0.172 Sum_probs=56.1
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEE
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQAL 347 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l 347 (409)
.+.||++|++++++-++|..+++.+.-+..+-+........-..+++|+|.---...-|+-+||+..+....+
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 4789999999999999999999998777777665554333334578899988777777888888766655443
No 238
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=64.90 E-value=4 Score=40.95 Aligned_cols=19 Identities=16% Similarity=0.088 Sum_probs=8.9
Q ss_pred EEEcCCCCCCCHHHHHHHH
Q 015292 104 VYIGGIPHDASEHDLRDFC 122 (409)
Q Consensus 104 l~v~nLp~~~t~~~l~~~f 122 (409)
.-++.+|--++.++-..++
T Consensus 958 k~~~d~pvFAsaeey~hll 976 (988)
T KOG2038|consen 958 KGLNDSPVFASAEEYAHLL 976 (988)
T ss_pred hccccchhhhhHHHHHHHh
Confidence 4445555444444444333
No 239
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.66 E-value=1.2 Score=41.29 Aligned_cols=81 Identities=11% Similarity=0.034 Sum_probs=65.6
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCC
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (409)
.+.|+..||...++.++.-+|..||.|..+.+.+...++...-.+||+-.+ .+|..+|..+.-..+.|..+++.++...
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 456788899999999999999999999999988777776656688888754 5677788777777788999999888754
Q ss_pred Cc
Q 015292 356 AD 357 (409)
Q Consensus 356 ~~ 357 (409)
..
T Consensus 83 ~~ 84 (572)
T KOG4365|consen 83 SE 84 (572)
T ss_pred hh
Confidence 43
No 240
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=62.81 E-value=17 Score=24.60 Aligned_cols=62 Identities=10% Similarity=0.265 Sum_probs=45.8
Q ss_pred HHHHHHHhccC-CeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeeccc
Q 015292 116 HDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (409)
Q Consensus 116 ~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 180 (409)
++|.+-|...| +|..|.-+..+.++.....-||++....+...+ ++=..+.+..|.|.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCC
Confidence 46888888888 688888777776677778889998776553333 344567888999987654
No 241
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=62.14 E-value=35 Score=24.23 Aligned_cols=57 Identities=12% Similarity=0.134 Sum_probs=43.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-cC-CeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHH
Q 015292 103 EVYIGGIPHDASEHDLRDFCQS-IG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162 (409)
Q Consensus 103 ~l~v~nLp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~ 162 (409)
.-|.--.+..++..+|+..++. || .|.+|+...-+ ....-|||.+.....|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHh
Confidence 4566667889999999999988 66 67888776653 2345699999998888876544
No 242
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=61.93 E-value=2.4 Score=36.69 Aligned_cols=68 Identities=28% Similarity=0.455 Sum_probs=44.7
Q ss_pred CCeEEEcCCCCC------------CCHHHHHHHHhccCCeeEEEEee-CC----CCCCcee-----e---------EEEE
Q 015292 101 GSEVYIGGIPHD------------ASEHDLRDFCQSIGEVTEVRIMK-GK----DSSENKG-----F---------AFVT 149 (409)
Q Consensus 101 ~~~l~v~nLp~~------------~t~~~l~~~f~~~G~v~~v~i~~-~~----~~g~~~g-----~---------afV~ 149 (409)
..||++.+||-. -+++-|+..|..||.|..|.|.. ++ -+|+..| | |||.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 468999999943 36677999999999998877632 21 1243333 3 4566
Q ss_pred ecCHHHHHHHHHHhCCCcc
Q 015292 150 FRNVELASKAIDKLNNTEF 168 (409)
Q Consensus 150 F~~~~~A~~a~~~l~~~~~ 168 (409)
|..-..-..|+..|.|..|
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 6655556667777776654
No 243
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=59.33 E-value=14 Score=28.11 Aligned_cols=55 Identities=27% Similarity=0.360 Sum_probs=29.3
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHH-HHHH
Q 015292 103 EVYIGGIPHD---------ASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA-SKAI 160 (409)
Q Consensus 103 ~l~v~nLp~~---------~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A-~~a~ 160 (409)
++.|-|+|.. ++-+.|++.|+.|.++. ++...+. ..+.|++.|.|.+.-.. ..|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHH
Confidence 4566677543 35678999999998875 5554543 35689999999865443 3444
No 244
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=58.65 E-value=19 Score=33.00 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=44.3
Q ss_pred EEEEecCHHHHHHHHHHhCCCccCCceEEEeecccccccccCCCCCCCChHHHHHHHHh
Q 015292 146 AFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSE 204 (409)
Q Consensus 146 afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~ 204 (409)
|||.|.+..+|..|++.+.... ++.+.+..+.+...+.=.||........++..+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccccccccCCChHHHHHHHHHHH
Confidence 7999999999999998655443 46668888988888888888777777777665443
No 245
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=57.93 E-value=49 Score=23.06 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=42.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-cC-CeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHH
Q 015292 103 EVYIGGIPHDASEHDLRDFCQS-IG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162 (409)
Q Consensus 103 ~l~v~nLp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~ 162 (409)
.-|+-.++..++..+|+..++. || .|..|+...-+ ...--|||.+..-..|......
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHh
Confidence 4677778899999999999988 66 67777765543 2345699999988888776543
No 246
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=56.98 E-value=10 Score=30.26 Aligned_cols=84 Identities=12% Similarity=0.061 Sum_probs=54.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcceecCCCCCCCCCCCc--cceEEEEcCCCCC-CCHHHHHHHHhhcCc
Q 015292 225 RGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS--QVKAVYVKNLPRN-VTQDQLKKLFEHHGR 301 (409)
Q Consensus 225 ~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~V~nLp~~-~t~~~L~~~F~~~G~ 301 (409)
.++..+.|.+..++..++. ..+..+.+..+.+..-.+......... ..-=|.|.|||.. .+++-|+.+.+.+|.
T Consensus 55 ~~~fl~~F~~~~d~~~vl~---~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~ 131 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLK---GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGE 131 (153)
T ss_pred CCeEEEEEEeccceeEEEe---cccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCC
Confidence 4678889998888776654 344445555555544443322211111 1123667899976 588999999999999
Q ss_pred eeEEeeCCCC
Q 015292 302 ITKVVVPPAK 311 (409)
Q Consensus 302 v~~v~i~~~~ 311 (409)
+..+......
T Consensus 132 ~i~vD~~t~~ 141 (153)
T PF14111_consen 132 PIEVDENTLK 141 (153)
T ss_pred eEEEEcCCCC
Confidence 9988876554
No 247
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=56.23 E-value=13 Score=29.67 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHhc-cCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecccc---------
Q 015292 112 DASEHDLRDFCQS-IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK--------- 181 (409)
Q Consensus 112 ~~t~~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~--------- 181 (409)
..+...|...+.. .+....+.+..- ..++..+.|.+.+++.+++. .....+.|..|.+....+.
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~ 101 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFE 101 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccccccccee
Confidence 4567777776655 333323333332 25789999999999999995 4556677877777665532
Q ss_pred ---cccccCCCCCC-CChHHHHHHHHhhCCceeEEEE
Q 015292 182 ---YRLFIGNIPRN-WGSEDLQKVVSEVGPGVTGVEL 214 (409)
Q Consensus 182 ---~~l~v~~l~~~-~~~~~l~~~f~~~g~~v~~~~~ 214 (409)
.-+.+.+||.. ++++-+..+.+.+|. +..+..
T Consensus 102 ~~~vWVri~glP~~~~~~~~~~~i~~~iG~-~i~vD~ 137 (153)
T PF14111_consen 102 HIPVWVRIYGLPLHLWSEEILKAIGSKIGE-PIEVDE 137 (153)
T ss_pred ccchhhhhccCCHHHhhhHHHHHHHHhcCC-eEEEEc
Confidence 12567899976 677889999999998 555443
No 248
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=55.18 E-value=28 Score=22.95 Aligned_cols=20 Identities=25% Similarity=0.627 Sum_probs=16.3
Q ss_pred HHHHHHHhhcCceeEEeeCC
Q 015292 290 DQLKKLFEHHGRITKVVVPP 309 (409)
Q Consensus 290 ~~L~~~F~~~G~v~~v~i~~ 309 (409)
++||++|+..|.|.-+.+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 68999999999988666643
No 249
>PF11081 DUF2890: Protein of unknown function (DUF2890); InterPro: IPR021304 This entry contains the 33kDa and 22kDa phosphoproteins from vertebrate adenoviruses.
Probab=54.36 E-value=6.1 Score=32.55 Aligned_cols=7 Identities=14% Similarity=0.439 Sum_probs=2.7
Q ss_pred HHHHhhc
Q 015292 293 KKLFEHH 299 (409)
Q Consensus 293 ~~~F~~~ 299 (409)
..+|++|
T Consensus 177 e~L~~ky 183 (187)
T PF11081_consen 177 EALYNKY 183 (187)
T ss_pred HHHHHHH
Confidence 3344443
No 250
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=53.55 E-value=6.9 Score=39.51 Aligned_cols=7 Identities=14% Similarity=-0.036 Sum_probs=3.8
Q ss_pred eEEEEEe
Q 015292 345 QALECSL 351 (409)
Q Consensus 345 ~~l~v~~ 351 (409)
++|.|..
T Consensus 544 ~PlVla~ 550 (622)
T PF02724_consen 544 LPLVLAA 550 (622)
T ss_pred cceeEEe
Confidence 4565544
No 251
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.52 E-value=36 Score=31.58 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=45.3
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCce-eEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v-~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~ 336 (409)
..+|-|.++|...-.++|...|+.|+.- -+|.++.+ -.||-.|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 4789999999999999999999999752 24555554 4899999999999999874
No 252
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=52.45 E-value=8.9 Score=38.75 Aligned_cols=9 Identities=33% Similarity=0.833 Sum_probs=3.7
Q ss_pred HHHHHHhhC
Q 015292 198 LQKVVSEVG 206 (409)
Q Consensus 198 l~~~f~~~g 206 (409)
|..+|...|
T Consensus 339 L~~lLAkMG 347 (622)
T PF02724_consen 339 LHKLLAKMG 347 (622)
T ss_pred HHHHHHHhC
Confidence 334444444
No 253
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=50.52 E-value=39 Score=22.86 Aligned_cols=62 Identities=10% Similarity=0.089 Sum_probs=44.0
Q ss_pred HHHHHHHhhcC-ceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCC
Q 015292 290 DQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (409)
Q Consensus 290 ~~L~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (409)
++|.+-|...| .+..|.-+..++++.+-..-||+.....+-.. -|+=..|+|++|.|.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46788888888 57788888888777666677888866543333 2444568899988876554
No 254
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=50.49 E-value=10 Score=32.73 Aligned_cols=7 Identities=14% Similarity=0.159 Sum_probs=2.9
Q ss_pred EEEEecC
Q 015292 146 AFVTFRN 152 (409)
Q Consensus 146 afV~F~~ 152 (409)
+.|++.-
T Consensus 284 ~~ve~E~ 290 (303)
T KOG3064|consen 284 VHVEIEY 290 (303)
T ss_pred ceEEeeh
Confidence 4444433
No 255
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=50.18 E-value=61 Score=23.02 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=40.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-ceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 015292 278 VYVKNLPRNVTQDQLKKLFEH-HG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (409)
Q Consensus 278 l~V~nLp~~~t~~~L~~~F~~-~G-~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~ 336 (409)
-|+--++..++..+|+..++. || .|..|..+.-..+. --|||++.....|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~---KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE---KKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc---EEEEEEeCCCCcHHHHHHh
Confidence 344445678899999999987 56 46777766555332 3699999998888876554
No 256
>COG4907 Predicted membrane protein [Function unknown]
Probab=47.59 E-value=40 Score=31.99 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhCC
Q 015292 327 RSSAMKALKNTEK 339 (409)
Q Consensus 327 ~e~A~~A~~~l~~ 339 (409)
.+...+|++.++-
T Consensus 525 ~dkVvkam~~~~~ 537 (595)
T COG4907 525 SDKVVKAMRKALD 537 (595)
T ss_pred HHHHHHHHHHhCc
Confidence 3556666666553
No 257
>COG4371 Predicted membrane protein [Function unknown]
Probab=46.62 E-value=30 Score=29.87 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=6.3
Q ss_pred CCCCCCCccCCcc
Q 015292 392 GAGFGAAAFAQVR 404 (409)
Q Consensus 392 g~g~g~~~~~~p~ 404 (409)
+++|++++|.-|.
T Consensus 80 gg~Y~GGGfgfPf 92 (334)
T COG4371 80 GGGYSGGGFGFPF 92 (334)
T ss_pred CCCCCCCCcCcCe
Confidence 3445555555443
No 258
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=45.30 E-value=19 Score=30.75 Aligned_cols=37 Identities=19% Similarity=0.390 Sum_probs=30.7
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEE
Q 015292 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVR 132 (409)
Q Consensus 96 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~ 132 (409)
.......+||+-|+|..+|++-|..+.+++|-+..+.
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 3445678999999999999999999999998665443
No 259
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.17 E-value=1.8e+02 Score=27.87 Aligned_cols=11 Identities=27% Similarity=0.582 Sum_probs=7.9
Q ss_pred HHHHHHHhhCC
Q 015292 197 DLQKVVSEVGP 207 (409)
Q Consensus 197 ~l~~~f~~~g~ 207 (409)
-|-.+|.-||+
T Consensus 246 ~lG~I~EiFGp 256 (483)
T KOG2236|consen 246 ALGQIFEIFGP 256 (483)
T ss_pred cchhhhhhhcc
Confidence 46677777887
No 260
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=44.87 E-value=69 Score=21.64 Aligned_cols=63 Identities=11% Similarity=0.220 Sum_probs=43.7
Q ss_pred HHHHHHHhhcC-ceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCC
Q 015292 290 DQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (409)
Q Consensus 290 ~~L~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (409)
++|++-|...| .|..|.-+..+.+..+-..-||+.....+...+ ++=..+++..|.|...+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 56788888888 477777777765555556788888776553333 3334688999999877654
No 261
>COG4907 Predicted membrane protein [Function unknown]
Probab=44.76 E-value=22 Score=33.59 Aligned_cols=12 Identities=25% Similarity=0.166 Sum_probs=6.3
Q ss_pred HHHHHHHHhCCc
Q 015292 329 SAMKALKNTEKY 340 (409)
Q Consensus 329 ~A~~A~~~l~~~ 340 (409)
-+.+.+++|...
T Consensus 524 V~dkVvkam~~~ 535 (595)
T COG4907 524 VSDKVVKAMRKA 535 (595)
T ss_pred cHHHHHHHHHHh
Confidence 345556655543
No 262
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=44.22 E-value=32 Score=31.81 Aligned_cols=67 Identities=16% Similarity=0.255 Sum_probs=45.5
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCc-eeEEeeCCCCCCC--CCCcEEEEEeCCHHHHHHHHHHhCCcee
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGR-ITKVVVPPAKPGQ--EKNRIGFVHFAERSSAMKALKNTEKYEL 342 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~~~~~~~--~~~g~afV~F~~~e~A~~A~~~l~~~~~ 342 (409)
..+.|.+||+.++.++|.+-..+|-. |....+.....+. .-.+.|+|.|.+.++...-...++|+.|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 67999999999999999888877653 3333333222111 1136789999999986666666666554
No 263
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=41.83 E-value=30 Score=31.74 Aligned_cols=36 Identities=28% Similarity=0.228 Sum_probs=27.6
Q ss_pred EEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCCCc
Q 015292 320 GFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQAD 357 (409)
Q Consensus 320 afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 357 (409)
|||+|.+..+|..|++.+... ..+.+.+..|....+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCCCccc
Confidence 799999999999999976543 346668877776654
No 264
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=40.78 E-value=13 Score=34.40 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=50.4
Q ss_pred CCeEEEcCCCCCCCHH--------HHHHHHhc--cCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHH
Q 015292 101 GSEVYIGGIPHDASEH--------DLRDFCQS--IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~--------~l~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~ 161 (409)
.+.+|+.+.....+.. ++...|.. .+++..++..++.....++|..|++|.....|++.+.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4668888887665544 89999998 7888899988887667889999999999999998873
No 265
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=40.72 E-value=29 Score=32.09 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=47.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCC-eeEEEEeeCCCC--CCceeeEEEEecCHHHHHHHHHHhCCCcc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGE-VTEVRIMKGKDS--SENKGFAFVTFRNVELASKAIDKLNNTEF 168 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~-v~~v~i~~~~~~--g~~~g~afV~F~~~~~A~~a~~~l~~~~~ 168 (409)
.-..|.|++||+..++.+|.+-..+|-. |....+.....+ ..-.+.|||.|.++++...-....+|..|
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 3467999999999999999888877642 333333321110 12356799999999997777777777654
No 266
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=40.45 E-value=10 Score=41.81 Aligned_cols=8 Identities=25% Similarity=0.509 Sum_probs=3.8
Q ss_pred eeEEEEee
Q 015292 128 VTEVRIMK 135 (409)
Q Consensus 128 v~~v~i~~ 135 (409)
+..|+|++
T Consensus 286 ~~~v~iic 293 (2849)
T PTZ00415 286 LIKVKIIC 293 (2849)
T ss_pred cceeEEEc
Confidence 44455544
No 267
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=39.30 E-value=20 Score=33.94 Aligned_cols=10 Identities=20% Similarity=0.604 Sum_probs=5.8
Q ss_pred ccCCceEEEe
Q 015292 167 EFKGKKIRCS 176 (409)
Q Consensus 167 ~~~g~~l~v~ 176 (409)
.+.||+|.|.
T Consensus 425 SMrGRpItvA 434 (620)
T COG4547 425 SMRGRPITVA 434 (620)
T ss_pred CcCCcceehh
Confidence 3556666664
No 268
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=38.64 E-value=43 Score=31.12 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=31.0
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHHhcc----CCeeEEEEeeC
Q 015292 100 HGSEVYIGGIPHD-ASEHDLRDFCQSI----GEVTEVRIMKG 136 (409)
Q Consensus 100 ~~~~l~v~nLp~~-~t~~~l~~~f~~~----G~v~~v~i~~~ 136 (409)
...+|-|-|+.|+ +...+|...|+.| |++..|.|+..
T Consensus 145 ~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 145 PTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred cccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 4678999999998 8888999999876 67888888765
No 269
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=38.37 E-value=15 Score=33.98 Aligned_cols=60 Identities=17% Similarity=0.165 Sum_probs=46.6
Q ss_pred eEEEEcCCCCCCC--------HHHHHHHHhh--cCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 015292 276 KAVYVKNLPRNVT--------QDQLKKLFEH--HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (409)
Q Consensus 276 ~~l~V~nLp~~~t--------~~~L~~~F~~--~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~ 335 (409)
+.+|+.+.+...+ .+++...|.+ .+.+..|+..++.....++|..|++|.....|++...
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4566666654443 3589999999 6777888888887666668999999999999998874
No 270
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=38.34 E-value=45 Score=27.28 Aligned_cols=71 Identities=17% Similarity=0.098 Sum_probs=44.4
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCC-CCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~-~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
+++|.. +.+...++|.++-+ |.+.+|...+.... ...+|-.||.|.+.+.|.+.+.. +.....-+.|...+
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELKRSG 183 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHHHHH
Confidence 455555 33334445555555 78888887665544 23368899999999999987774 44444444444443
No 271
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=37.30 E-value=31 Score=29.58 Aligned_cols=32 Identities=19% Similarity=0.501 Sum_probs=27.7
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeEEe
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVV 306 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~ 306 (409)
..+||+-|||..+|++-|..+.+.+|.+..+.
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 47999999999999999999999999655443
No 272
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=37.10 E-value=1.2e+02 Score=22.77 Aligned_cols=106 Identities=19% Similarity=0.288 Sum_probs=59.7
Q ss_pred CCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCc--cCCceEEEeeccccccccc
Q 015292 109 IPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE--FKGKKIRCSTSQAKYRLFI 186 (409)
Q Consensus 109 Lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~--~~g~~l~v~~~~~~~~l~v 186 (409)
||+-+. .|.++|..-|+|.+|..+..-. . ..|+-.++|.. ++|. |.|........++|
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvtqyp----d-------------ndal~~~~G~lE~vDg~-i~IGs~q~~~sV~i 70 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVTQYP----D-------------NDALLYVHGTLEQVDGN-IRIGSGQTPASVRI 70 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEeccC----C-------------chhhheeeeehhhccCc-EEEccCCCcccEEE
Confidence 666554 5889999999999887654311 1 12333344443 3454 66666665555665
Q ss_pred CCC---------CCCCChHHHHHHHHhhCC--ceeEEEEeecCCCCCCCccEEEEEeCCH
Q 015292 187 GNI---------PRNWGSEDLQKVVSEVGP--GVTGVELVKDMKNSSNNRGFAFIEYHNH 235 (409)
Q Consensus 187 ~~l---------~~~~~~~~l~~~f~~~g~--~v~~~~~~~~~~~~~~~~g~~fv~f~~~ 235 (409)
.+- |..+|-.+++++|+.--. +|+.-.+.++ .....+...||..|...
T Consensus 71 ~gTPsgnnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rd-GLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 71 QGTPSGNNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRD-GLPEGSYRICFRLFNAT 129 (145)
T ss_pred ecCCCCCceecCceeeeHHHHHHHHhhhhhhccccHHHHhhc-CCCCCceEEEEEEeccc
Confidence 543 446788899999986310 1222223333 22233444566665543
No 273
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=36.01 E-value=18 Score=37.88 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=5.5
Q ss_pred CeEEEcCCCC
Q 015292 102 SEVYIGGIPH 111 (409)
Q Consensus 102 ~~l~v~nLp~ 111 (409)
+-+||-.+|.
T Consensus 905 ~~~wvl~~Pi 914 (1096)
T TIGR00927 905 QAIYLFLLPI 914 (1096)
T ss_pred eeEeEEecch
Confidence 4456655554
No 274
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=35.38 E-value=15 Score=38.38 Aligned_cols=9 Identities=33% Similarity=0.538 Sum_probs=4.3
Q ss_pred eeEEEEecC
Q 015292 144 GFAFVTFRN 152 (409)
Q Consensus 144 g~afV~F~~ 152 (409)
.+-.+.|--
T Consensus 932 k~y~ltFi~ 940 (1096)
T TIGR00927 932 KFFVITFLG 940 (1096)
T ss_pred ceeeehHHH
Confidence 344455543
No 275
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=35.22 E-value=1.4e+02 Score=20.21 Aligned_cols=60 Identities=17% Similarity=0.165 Sum_probs=36.0
Q ss_pred eeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecccccccccCCCCCC---CChHHHHHHHHhhCC
Q 015292 144 GFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRN---WGSEDLQKVVSEVGP 207 (409)
Q Consensus 144 g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~l~v~~l~~~---~~~~~l~~~f~~~g~ 207 (409)
.+.+|.|.|..+|.+|-+.|...-+..+.+-+-..-... -++... -..+.+..+++..+-
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~----CG~al~~~~~d~~~i~~~l~~~~i 64 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPREISAG----CGLALRFEPEDLEKIKEILEENGI 64 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEeCCChhccCC----CCEEEEEChhhHHHHHHHHHHCCC
Confidence 368999999999999998888776655444332211111 112111 345566677776664
No 276
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=34.40 E-value=42 Score=28.73 Aligned_cols=13 Identities=0% Similarity=-0.082 Sum_probs=6.6
Q ss_pred CCCHHHHHHHHhc
Q 015292 112 DASEHDLRDFCQS 124 (409)
Q Consensus 112 ~~t~~~l~~~f~~ 124 (409)
++++.++...|+.
T Consensus 149 S~DW~Em~~Ais~ 161 (217)
T PF07423_consen 149 SVDWNEMLKAISY 161 (217)
T ss_pred CcCHHHHHHHHHH
Confidence 3455555555543
No 277
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.00 E-value=8.5 Score=35.92 Aligned_cols=77 Identities=6% Similarity=-0.112 Sum_probs=61.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 102 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
...|+..||...++.++.-+|..||.|..+.+.+.-..|...-.+||.-.+ +.|..||.-+.-..++|..+++..+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 456888999999999999999999999888887766667777788887654 45677777777777778777776654
No 278
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=31.89 E-value=81 Score=30.73 Aligned_cols=43 Identities=21% Similarity=0.272 Sum_probs=37.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCCCccC
Q 015292 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359 (409)
Q Consensus 317 ~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 359 (409)
..++++.|.+...+.+|+..++|....+..+++..+.......
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~~~~ 105 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEVGSL 105 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccccccc
Confidence 3799999999999999999999999999999988887765543
No 279
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=29.44 E-value=1.1e+02 Score=21.68 Aligned_cols=26 Identities=42% Similarity=0.552 Sum_probs=20.9
Q ss_pred CeeEEEEeeCCCCCCceeeEEEEecC
Q 015292 127 EVTEVRIMKGKDSSENKGFAFVTFRN 152 (409)
Q Consensus 127 ~v~~v~i~~~~~~g~~~g~afV~F~~ 152 (409)
+|.+|+|..-...|+-+++|-|.|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 36788888876669999999999865
No 280
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=29.01 E-value=2e+02 Score=20.00 Aligned_cols=56 Identities=20% Similarity=0.276 Sum_probs=39.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-ceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 015292 278 VYVKNLPRNVTQDQLKKLFEH-HG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (409)
Q Consensus 278 l~V~nLp~~~t~~~L~~~F~~-~G-~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~ 336 (409)
-|+-.++..++..+|+..++. || .|..|..+.-+.+. --|||++..-..|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~---KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGE---KKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc---eEEEEEECCCCcHHHHHHh
Confidence 455566788999999999987 55 46666665554332 3699999888888765543
No 281
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=28.66 E-value=78 Score=21.57 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=21.0
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceec
Q 015292 318 RIGFVHFAERSSAMKALKNTEKYELD 343 (409)
Q Consensus 318 g~afV~F~~~e~A~~A~~~l~~~~~~ 343 (409)
.+.+|.|.|..+|.+|-..|....+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 36899999999999999888755443
No 282
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=27.12 E-value=17 Score=23.55 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=18.7
Q ss_pred CcEEEEEeCC-HHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 317 NRIGFVHFAE-RSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 317 ~g~afV~F~~-~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
+|||||...+ ..+.--.-..|++ -++|-.+.|.+..
T Consensus 8 ~GfGFv~~~~~~~DifIp~~~l~~-A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 8 KGFGFVIPDDGGEDIFIPPRNLNG-AMDGDKVLVRITP 44 (58)
T ss_dssp SS-EEEEECT-TEEEEE-HHHHTT-S-TT-EEEEEEEE
T ss_pred CCCEEEEECCCCCCEEECHHHHCC-CCCCCEEEEEEec
Confidence 6999999987 2221112223443 4567777777666
No 283
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=26.71 E-value=2.3e+02 Score=26.60 Aligned_cols=82 Identities=18% Similarity=0.317 Sum_probs=57.9
Q ss_pred CccceEEEEcCCCCC-CCHHHHHHHHhhc----CceeEEeeCCCCCCC--------------------------------
Q 015292 272 ASQVKAVYVKNLPRN-VTQDQLKKLFEHH----GRITKVVVPPAKPGQ-------------------------------- 314 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~~----G~v~~v~i~~~~~~~-------------------------------- 314 (409)
..++++|-|-||.++ +...+|..+|+.| |.|..|.|.+...|.
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 345688999999975 5778999988865 567778876533110
Q ss_pred ---------------------------------CCCcEEEEEeCCHHHHHHHHHHhCCceec--CeEEEEEecC
Q 015292 315 ---------------------------------EKNRIGFVHFAERSSAMKALKNTEKYELD--GQALECSLAK 353 (409)
Q Consensus 315 ---------------------------------~~~g~afV~F~~~e~A~~A~~~l~~~~~~--g~~l~v~~a~ 353 (409)
..--||.|+|.+...+.......+|..+. +..+.+.|..
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvP 296 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVP 296 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecC
Confidence 00126899999999999999888887775 4555666554
No 284
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=26.10 E-value=2.5e+02 Score=27.93 Aligned_cols=91 Identities=16% Similarity=0.287 Sum_probs=60.1
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCCCccCCCC---Cc---------ceecCCCCCCC---CCCCccceEEEEcCCCCCCCHH
Q 015292 226 GFAFIEYHNHKCAEYSRQKMTNPNFKLGTN---AP---------TVSWADPRNVD---SSGASQVKAVYVKNLPRNVTQD 290 (409)
Q Consensus 226 g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~---~~---------~~~~~~~~~~~---~~~~~~~~~l~V~nLp~~~t~~ 290 (409)
--||+++.+.....--...++..++..+.. .+ .+.+++..... .........+|+.+|+.++.++
T Consensus 237 i~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~d 316 (621)
T COG0445 237 IPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPED 316 (621)
T ss_pred cceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHH
Confidence 458999999988887777777654432111 00 12222222111 1233446789999999999998
Q ss_pred HHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEe
Q 015292 291 QLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHF 324 (409)
Q Consensus 291 ~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F 324 (409)
.=.++.....-++++.|++. ||| |+|
T Consensus 317 VQ~~~irsipGlEna~i~rp-------gYA-IEY 342 (621)
T COG0445 317 VQEQIIRSIPGLENAEILRP-------GYA-IEY 342 (621)
T ss_pred HHHHHHHhCcccccceeecc-------cee-eee
Confidence 88888888888899999873 677 555
No 285
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=25.64 E-value=2e+02 Score=20.21 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=24.2
Q ss_pred ceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCc
Q 015292 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340 (409)
Q Consensus 301 ~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~ 340 (409)
.|.++-.+.+- +||-||+=.+..++..|+..+.+.
T Consensus 33 ~I~Si~~~~~l-----kGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPDSL-----KGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-TTS-----TSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCCC-----ceEEEEEeCCHHHHHHHHhcccce
Confidence 35566555442 799999999999999999887653
No 286
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=25.47 E-value=15 Score=33.54 Aligned_cols=11 Identities=18% Similarity=-0.034 Sum_probs=4.3
Q ss_pred CCCeEEEcCCC
Q 015292 100 HGSEVYIGGIP 110 (409)
Q Consensus 100 ~~~~l~v~nLp 110 (409)
-..+|+---+|
T Consensus 397 ~tHtVh~pyFP 407 (520)
T KOG4434|consen 397 ITHTVHSPYFP 407 (520)
T ss_pred cceeeccCCCc
Confidence 33444443333
No 287
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=24.72 E-value=1e+02 Score=31.36 Aligned_cols=14 Identities=0% Similarity=0.142 Sum_probs=10.2
Q ss_pred CCHHHHHHHHhccC
Q 015292 113 ASEHDLRDFCQSIG 126 (409)
Q Consensus 113 ~t~~~l~~~f~~~G 126 (409)
.+-+++..++..+-
T Consensus 396 k~yeef~~Ll~k~s 409 (823)
T KOG2147|consen 396 KNYEEFLALLEKLS 409 (823)
T ss_pred cCHHHHHHHHHccC
Confidence 46778888887764
No 288
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=24.45 E-value=1.4e+02 Score=21.69 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=20.0
Q ss_pred CeeEEEEeeCCCCCCceeeEEEEecC
Q 015292 127 EVTEVRIMKGKDSSENKGFAFVTFRN 152 (409)
Q Consensus 127 ~v~~v~i~~~~~~g~~~g~afV~F~~ 152 (409)
+|..|+|.+-...|+-+++|-|.|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 36777777765568899999999865
No 289
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=24.34 E-value=2.3e+02 Score=22.94 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=27.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-cC-CeeEEEEeeC
Q 015292 103 EVYIGGIPHDASEHDLRDFCQS-IG-EVTEVRIMKG 136 (409)
Q Consensus 103 ~l~v~nLp~~~t~~~l~~~f~~-~G-~v~~v~i~~~ 136 (409)
..|+-.++.+++..+|+..|.. || .|..|+.+.-
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~ 58 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNV 58 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEec
Confidence 5688889999999999999988 66 5777776553
No 290
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.22 E-value=6.6e+02 Score=25.41 Aligned_cols=97 Identities=23% Similarity=0.255 Sum_probs=64.2
Q ss_pred CHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhC--CCc------cCCceEEEeecccc--cc
Q 015292 114 SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN--NTE------FKGKKIRCSTSQAK--YR 183 (409)
Q Consensus 114 t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~--~~~------~~g~~l~v~~~~~~--~~ 183 (409)
-.++|.+.|..-+-|..|.+.. .||-.+.+....-+......+. +.. -.|++|.|.++.++ ..
T Consensus 59 iA~~i~~~l~~~~~~~~veiaG-------pgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNptkp 131 (577)
T COG0018 59 IAEEIAEKLDTDEIIEKVEIAG-------PGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPTGP 131 (577)
T ss_pred HHHHHHHhccccCcEeEEEEcC-------CCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCCCC
Confidence 4455666676666677777742 2344444443333443333333 222 25789999887765 56
Q ss_pred cccCCCCCCCChHHHHHHHHhhCCceeEEEEeec
Q 015292 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217 (409)
Q Consensus 184 l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~ 217 (409)
++||++-..+--+.|..++...|-.|.....+-|
T Consensus 132 lHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD 165 (577)
T COG0018 132 LHIGHLRNAIIGDSLARILEFLGYDVTRENYVND 165 (577)
T ss_pred cccchhhhhHHHHHHHHHHHHcCCCeeEEeeECc
Confidence 9999999999999999999999987777766665
No 291
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.21 E-value=1.1e+02 Score=27.50 Aligned_cols=6 Identities=33% Similarity=1.060 Sum_probs=2.2
Q ss_pred CCCCCC
Q 015292 390 ALGAGF 395 (409)
Q Consensus 390 ~~g~g~ 395 (409)
+||+||
T Consensus 80 ~YGgGy 85 (362)
T KOG3875|consen 80 PYGGGY 85 (362)
T ss_pred CcCCCc
Confidence 333333
No 292
>PTZ00110 helicase; Provisional
Probab=24.02 E-value=1.2e+02 Score=30.25 Aligned_cols=11 Identities=36% Similarity=0.954 Sum_probs=4.4
Q ss_pred CCCCCCCCCCC
Q 015292 388 YGALGAGFGAA 398 (409)
Q Consensus 388 ~g~~g~g~g~~ 398 (409)
+|++++||++.
T Consensus 52 ~~~~~~~~~~~ 62 (545)
T PTZ00110 52 YGNYSGGYGGF 62 (545)
T ss_pred CCCCCCcCCCC
Confidence 33344444433
No 293
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.84 E-value=1.6e+02 Score=28.91 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=46.1
Q ss_pred CeEEEcCCCCCCC---HHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceE
Q 015292 102 SEVYIGGIPHDAS---EHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (409)
Q Consensus 102 ~~l~v~nLp~~~t---~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l 173 (409)
.-=+||||+.=.. -..+.++-++||+|..+++-. .-.|--.+.+.|..|+. -++..+.+|..
T Consensus 33 ~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 33 PLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred CCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 4447888875433 345666777899999888722 25788889999999995 57888888886
No 294
>PF14893 PNMA: PNMA
Probab=23.18 E-value=68 Score=29.55 Aligned_cols=75 Identities=15% Similarity=0.242 Sum_probs=42.5
Q ss_pred eEEEEcCCCCCCCHHHHHHHHh----hcCceeE-EeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFE----HHGRITK-VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~----~~G~v~~-v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~ 350 (409)
+.|.|.+||.++++.+|.+.+. +.|...- -++++...+ .-.|+|+|...-+-...=..+- -.|..-+|-
T Consensus 19 r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~---~~aalve~~e~~n~~~iP~~i~---g~gg~W~Vv 92 (331)
T PF14893_consen 19 RALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN---AKAALVEFAEDVNYSLIPREIP---GKGGPWRVV 92 (331)
T ss_pred hhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc---cceeeeecccccchhhCchhcC---CCCCceEEE
Confidence 6799999999999998887764 4554221 112222222 2368999965443322222221 135666666
Q ss_pred ecCCCC
Q 015292 351 LAKPQA 356 (409)
Q Consensus 351 ~a~~~~ 356 (409)
|-.+..
T Consensus 93 ~~p~~~ 98 (331)
T PF14893_consen 93 FKPPAP 98 (331)
T ss_pred ecCCCC
Confidence 655443
No 295
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=23.17 E-value=65 Score=27.60 Aligned_cols=12 Identities=25% Similarity=0.086 Sum_probs=5.7
Q ss_pred HHHHHHHHHhCC
Q 015292 154 ELASKAIDKLNN 165 (409)
Q Consensus 154 ~~A~~a~~~l~~ 165 (409)
.+..+||....|
T Consensus 153 ~Em~~Ais~atg 164 (217)
T PF07423_consen 153 NEMLKAISYATG 164 (217)
T ss_pred HHHHHHHHHhhC
Confidence 445555544333
No 296
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=22.64 E-value=2.2e+02 Score=18.20 Aligned_cols=54 Identities=11% Similarity=0.152 Sum_probs=39.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCH----HHHHHHHHH
Q 015292 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER----SSAMKALKN 336 (409)
Q Consensus 277 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~----e~A~~A~~~ 336 (409)
+|.|.|+.-.--...|+..+...-.|.++.+-... +.+-|.|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHH
Confidence 46777776666678899999999888888886653 6788888754 455555554
No 297
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=21.57 E-value=49 Score=29.73 Aligned_cols=8 Identities=0% Similarity=-0.027 Sum_probs=4.7
Q ss_pred CCeEEEcC
Q 015292 101 GSEVYIGG 108 (409)
Q Consensus 101 ~~~l~v~n 108 (409)
...+|..+
T Consensus 84 t~~~F~~~ 91 (285)
T PF03896_consen 84 TTILFPKP 91 (285)
T ss_pred EEEEeccc
Confidence 34566666
No 298
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=21.46 E-value=2.9e+02 Score=19.14 Aligned_cols=60 Identities=5% Similarity=0.084 Sum_probs=39.0
Q ss_pred EEEcCCCCCCCHHHHHHHHh-------hcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCc
Q 015292 278 VYVKNLPRNVTQDQLKKLFE-------HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340 (409)
Q Consensus 278 l~V~nLp~~~t~~~L~~~F~-------~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~ 340 (409)
|..++||..+|.++|..... .+..|..++-....+.+ +-||+..=.|.+...++.+. .|.
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~--k~~Cly~Ap~~eaV~~~~~~-aG~ 69 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDG--KIFCLYEAPDEEAVREHARR-AGL 69 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCC--eEEEEEECCCHHHHHHHHHH-cCC
Confidence 66789999899999977664 34455555554443333 35777776777777666664 353
No 299
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=20.67 E-value=45 Score=32.17 Aligned_cols=13 Identities=31% Similarity=0.245 Sum_probs=6.6
Q ss_pred EEecCHHHHHHHH
Q 015292 148 VTFRNVELASKAI 160 (409)
Q Consensus 148 V~F~~~~~A~~a~ 160 (409)
=.|...+.|-+..
T Consensus 214 DrF~e~eQaPKSr 226 (694)
T KOG4264|consen 214 DRFDEKEQAPKSR 226 (694)
T ss_pred ccchhhhcCchHH
Confidence 4465555554433
No 300
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=20.58 E-value=61 Score=33.96 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=10.8
Q ss_pred CCCCCCCHHHHHHHHhh
Q 015292 282 NLPRNVTQDQLKKLFEH 298 (409)
Q Consensus 282 nLp~~~t~~~L~~~F~~ 298 (409)
+.|..+....|+.+|+.
T Consensus 446 ~~pl~~~~~eLrKyF~~ 462 (1024)
T KOG1999|consen 446 KGPLEVPASELRKYFEP 462 (1024)
T ss_pred CCccccchHhhhhhccC
Confidence 34566667777777754
No 301
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=20.33 E-value=2.5e+02 Score=23.41 Aligned_cols=59 Identities=19% Similarity=0.146 Sum_probs=0.0
Q ss_pred eEEEEEecCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCc
Q 015292 345 QALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGYGLAGGTYGALGAGFGAAAFAQV 403 (409)
Q Consensus 345 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~g~g~g~~~~~~p 403 (409)
..+.|....-..............+...++.+.+++++++++.+++.+++.+++.+.++
T Consensus 97 t~~eV~a~~Vg~~L~~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (186)
T PRK07772 97 TVVELEVDEIGPSLRYATAKVTRASRGGGGGGGGGGFGGGGGGSGGGGGGGGGGGAPGG 155 (186)
T ss_pred EEEEEEEEEcccceeeeeceeeeccCCCCCCCCCCCccCccCCCCCCcCCCCCcccCCC
No 302
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=20.32 E-value=76 Score=30.90 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=13.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHH
Q 015292 102 SEVYIGGIPHDASEHDLRDFC 122 (409)
Q Consensus 102 ~~l~v~nLp~~~t~~~l~~~f 122 (409)
+.-.|+.||--++.++-..++
T Consensus 799 rk~~lk~lpvfa~ad~ya~~l 819 (821)
T COG5593 799 RKNMLKSLPVFASADDYAQYL 819 (821)
T ss_pred HHHHHhcCCcccchHHHHHHh
Confidence 345677788777777665554
No 303
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=20.27 E-value=1.9e+02 Score=28.07 Aligned_cols=24 Identities=17% Similarity=0.511 Sum_probs=17.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcc
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSI 125 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~ 125 (409)
..-||.+. |..+++++-..|+..+
T Consensus 336 vKpIW~R~-p~eV~EdEYt~FYkSl 359 (785)
T KOG0020|consen 336 VKPIWLRK-PKEVTEDEYTKFYKSL 359 (785)
T ss_pred cchhhccC-chhcchHHHHHHHHhh
Confidence 34466654 7789999988888765
No 304
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=20.09 E-value=2.3e+02 Score=17.56 Aligned_cols=43 Identities=16% Similarity=0.332 Sum_probs=29.2
Q ss_pred HHHHHHHHhhcC-ceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHH
Q 015292 289 QDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (409)
Q Consensus 289 ~~~L~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~ 334 (409)
-..|...|...| .|.++.+.... +. ++...+.+.+.+.|.+++
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~-~~--~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETR-GE--FGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEcc-CC--cEEEEEEECCHHHHHHHh
Confidence 356667777776 47777766543 22 467788888888887765
Done!