Query 015292
Match_columns 409
No_of_seqs 366 out of 2983
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 10:03:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015292.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015292hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 4.3E-46 1.5E-50 337.5 26.9 252 94-355 34-291 (292)
2 3smz_A Protein raver-1, ribonu 100.0 3.7E-46 1.3E-50 336.5 25.6 247 99-358 20-267 (284)
3 4f02_A Polyadenylate-binding p 100.0 3.2E-37 1.1E-41 265.4 15.3 171 100-358 14-184 (213)
4 1l3k_A Heterogeneous nuclear r 100.0 3.7E-35 1.3E-39 249.8 19.8 180 97-360 9-188 (196)
5 3md3_A Nuclear and cytoplasmic 100.0 9.5E-35 3.3E-39 240.5 20.5 166 102-354 1-166 (166)
6 1fxl_A Paraneoplastic encephal 100.0 3.2E-34 1.1E-38 237.5 20.8 164 101-352 2-167 (167)
7 2qfj_A FBP-interacting repress 100.0 4.6E-34 1.6E-38 246.9 22.5 180 101-357 28-207 (216)
8 1b7f_A Protein (SXL-lethal pro 100.0 1.6E-34 5.4E-39 239.7 18.6 165 100-352 2-168 (168)
9 2cjk_A Nuclear polyadenylated 100.0 1.2E-34 4.2E-39 240.0 15.7 165 100-355 2-166 (167)
10 3nmr_A Cugbp ELAV-like family 100.0 4.2E-33 1.4E-37 232.7 19.7 166 100-353 2-175 (175)
11 2yh0_A Splicing factor U2AF 65 100.0 3.8E-32 1.3E-36 231.6 19.8 183 100-357 3-196 (198)
12 1fje_B Nucleolin RBD12, protei 100.0 7.1E-33 2.4E-37 231.2 13.5 167 96-355 8-174 (175)
13 3tyt_A Heterogeneous nuclear r 100.0 1.8E-31 6.2E-36 226.8 21.6 195 100-352 3-204 (205)
14 2g4b_A Splicing factor U2AF 65 100.0 3.9E-32 1.4E-36 226.0 16.9 159 100-353 3-172 (172)
15 3pgw_A U1-A; protein-RNA compl 100.0 5E-31 1.7E-35 237.3 24.9 246 98-353 6-281 (282)
16 2adc_A Polypyrimidine tract-bi 100.0 5.2E-31 1.8E-35 229.2 21.4 194 98-355 31-228 (229)
17 1qm9_A Polypyrimidine tract-bi 100.0 5.4E-31 1.8E-35 224.3 17.6 192 100-355 2-197 (198)
18 3sde_A Paraspeckle component 1 100.0 2.2E-30 7.6E-35 229.7 17.2 161 98-359 19-183 (261)
19 3smz_A Protein raver-1, ribonu 99.9 8.4E-27 2.9E-31 209.9 18.6 164 98-266 92-265 (284)
20 2ghp_A U4/U6 snRNA-associated 99.9 3.2E-26 1.1E-30 206.9 14.6 162 99-265 115-291 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 1E-23 3.5E-28 172.2 19.1 85 274-358 69-153 (158)
22 4f25_A Polyadenylate-binding p 99.9 9.4E-23 3.2E-27 156.5 10.2 98 98-197 2-113 (115)
23 4fxv_A ELAV-like protein 1; RN 99.9 1.9E-22 6.5E-27 150.0 10.1 81 275-355 19-99 (99)
24 2i2y_A Fusion protein consists 99.9 1.3E-21 4.3E-26 158.1 15.1 139 140-356 10-149 (150)
25 4fxv_A ELAV-like protein 1; RN 99.9 9.2E-22 3.1E-26 146.3 11.5 83 98-180 16-98 (99)
26 2lxi_A RNA-binding protein 10; 99.9 1E-21 3.5E-26 143.8 9.4 82 276-357 2-85 (91)
27 1h2v_Z 20 kDa nuclear CAP bind 99.8 5.8E-21 2E-25 155.3 11.4 86 273-358 37-122 (156)
28 2lkz_A RNA-binding protein 5; 99.8 3.9E-21 1.3E-25 141.1 8.8 79 276-354 10-94 (95)
29 3s8s_A Histone-lysine N-methyl 99.8 1.1E-20 3.9E-25 143.1 10.6 84 274-357 5-88 (110)
30 1whw_A Hypothetical protein ri 99.8 4.9E-20 1.7E-24 137.6 14.0 86 273-358 6-91 (99)
31 3s8s_A Histone-lysine N-methyl 99.8 2.2E-20 7.4E-25 141.5 11.7 84 98-181 3-86 (110)
32 2dnz_A Probable RNA-binding pr 99.8 2.9E-20 9.9E-25 137.8 11.9 84 274-357 4-87 (95)
33 1x5t_A Splicing factor 3B subu 99.8 2.8E-20 9.5E-25 138.2 11.7 86 274-359 4-90 (96)
34 2dgs_A DAZ-associated protein 99.8 6E-20 2.1E-24 137.1 12.7 86 273-359 8-93 (99)
35 2dgo_A Cytotoxic granule-assoc 99.8 1.4E-19 4.7E-24 139.1 14.7 88 272-359 12-99 (115)
36 2cqb_A Peptidyl-prolyl CIS-tra 99.8 5.5E-20 1.9E-24 138.2 12.1 87 273-359 10-96 (102)
37 1x5u_A Splicing factor 3B subu 99.8 7E-20 2.4E-24 138.4 12.7 88 272-359 12-99 (105)
38 2lea_A Serine/arginine-rich sp 99.8 1.5E-20 5E-25 148.3 9.1 125 227-358 6-130 (135)
39 2lxi_A RNA-binding protein 10; 99.8 4.8E-21 1.7E-25 140.2 5.9 83 101-183 1-85 (91)
40 2cq0_A Eukaryotic translation 99.8 4.9E-20 1.7E-24 138.7 11.4 88 272-359 12-99 (103)
41 1x5s_A Cold-inducible RNA-bind 99.8 4.8E-20 1.6E-24 138.5 11.4 87 273-359 10-96 (102)
42 2dnm_A SRP46 splicing factor; 99.8 5.4E-20 1.8E-24 138.4 11.5 87 272-358 10-96 (103)
43 2cpz_A CUG triplet repeat RNA- 99.8 7.8E-20 2.7E-24 140.5 12.6 88 272-359 22-109 (115)
44 3md1_A Nuclear and cytoplasmic 99.8 5.3E-20 1.8E-24 132.7 10.6 81 276-356 2-82 (83)
45 3pgw_S U1-70K; protein-RNA com 99.8 2E-20 6.7E-25 176.3 10.6 86 272-357 99-184 (437)
46 2x1f_A MRNA 3'-END-processing 99.8 8.5E-20 2.9E-24 135.4 11.6 84 275-358 2-85 (96)
47 2cph_A RNA binding motif prote 99.8 1.4E-19 4.9E-24 137.2 13.0 87 272-358 12-100 (107)
48 3bs9_A Nucleolysin TIA-1 isofo 99.8 5.3E-20 1.8E-24 134.0 10.1 82 274-355 5-86 (87)
49 3mdf_A Peptidyl-prolyl CIS-tra 99.8 5.5E-20 1.9E-24 133.2 10.2 81 273-353 5-85 (85)
50 1x4h_A RNA-binding protein 28; 99.8 1.9E-19 6.6E-24 137.5 13.7 88 272-359 12-105 (111)
51 2lkz_A RNA-binding protein 5; 99.8 1.3E-20 4.6E-25 138.2 6.9 81 100-180 8-94 (95)
52 1u6f_A Tcubp1, RNA-binding pro 99.8 1.8E-19 6.2E-24 143.5 13.8 88 271-358 38-125 (139)
53 2cqd_A RNA-binding region cont 99.8 3.8E-19 1.3E-23 136.9 14.8 85 272-357 14-98 (116)
54 2dgx_A KIAA0430 protein; RRM d 99.8 2.1E-19 7.3E-24 133.1 12.8 82 273-357 7-92 (96)
55 2e5h_A Zinc finger CCHC-type a 99.8 1.6E-19 5.3E-24 133.5 12.0 82 272-353 13-94 (94)
56 4f25_A Polyadenylate-binding p 99.8 4.4E-20 1.5E-24 141.6 9.3 82 275-358 5-86 (115)
57 2dgp_A Bruno-like 4, RNA bindi 99.8 1.7E-19 5.8E-24 136.5 12.5 87 272-358 10-99 (106)
58 3lqv_A PRE-mRNA branch site pr 99.8 6.9E-20 2.3E-24 140.9 10.3 105 98-207 5-109 (115)
59 2cqc_A Arginine/serine-rich sp 99.8 1.3E-19 4.4E-24 134.3 11.4 84 271-354 11-94 (95)
60 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.8E-19 1.3E-23 133.8 14.1 85 273-359 13-97 (103)
61 1rk8_A CG8781-PA, CG8781-PA pr 99.8 6.6E-20 2.2E-24 150.3 10.5 130 230-359 11-156 (165)
62 2fy1_A RNA-binding motif prote 99.8 2.2E-19 7.6E-24 137.7 12.7 84 274-358 6-89 (116)
63 2do4_A Squamous cell carcinoma 99.8 1.6E-19 5.5E-24 135.0 11.6 85 272-357 14-98 (100)
64 2cpf_A RNA binding motif prote 99.8 7E-20 2.4E-24 136.5 9.4 86 274-359 4-92 (98)
65 2cq3_A RNA-binding protein 9; 99.8 4.8E-19 1.7E-23 133.2 14.0 86 272-359 12-97 (103)
66 1wi8_A EIF-4B, eukaryotic tran 99.8 3.9E-19 1.3E-23 133.9 13.4 84 273-358 13-97 (104)
67 1oo0_B CG8781-PA, drosophila Y 99.8 2.3E-19 7.7E-24 136.8 12.2 86 272-357 23-108 (110)
68 2d9p_A Polyadenylate-binding p 99.8 1.3E-19 4.4E-24 136.4 10.6 86 272-359 12-97 (103)
69 2dng_A Eukaryotic translation 99.8 2.7E-19 9.1E-24 134.6 12.3 85 272-358 12-96 (103)
70 2cpe_A RNA-binding protein EWS 99.8 3.1E-19 1.1E-23 136.7 12.9 87 272-358 12-106 (113)
71 3q2s_C Cleavage and polyadenyl 99.8 5.6E-21 1.9E-25 164.6 3.4 81 275-355 68-150 (229)
72 3r27_A HnRNP L, heterogeneous 99.8 1.4E-19 4.8E-24 132.4 10.3 79 272-356 18-98 (100)
73 2dnh_A Bruno-like 5, RNA bindi 99.8 2.2E-19 7.7E-24 135.6 11.3 87 273-360 13-102 (105)
74 1sjq_A Polypyrimidine tract-bi 99.8 1.6E-19 5.4E-24 133.6 10.1 80 273-358 14-95 (105)
75 3ns6_A Eukaryotic translation 99.8 3.7E-20 1.3E-24 138.2 6.7 82 275-356 6-94 (100)
76 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.5E-19 8.4E-24 130.4 10.9 83 99-181 4-86 (87)
77 3p5t_L Cleavage and polyadenyl 99.8 2.2E-20 7.5E-25 136.7 5.1 82 276-357 2-85 (90)
78 2dnz_A Probable RNA-binding pr 99.8 3.1E-19 1.1E-23 132.2 11.4 85 98-182 2-86 (95)
79 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.9E-19 6.5E-24 130.4 10.0 82 98-179 4-85 (85)
80 2jrs_A RNA-binding protein 39; 99.8 1.6E-19 5.5E-24 136.6 9.9 85 272-356 23-107 (108)
81 3md1_A Nuclear and cytoplasmic 99.8 3.2E-19 1.1E-23 128.5 11.1 81 101-181 1-81 (83)
82 2m2b_A RNA-binding protein 10; 99.8 2E-19 6.9E-24 141.4 10.7 86 272-358 20-111 (131)
83 1x4a_A Splicing factor, argini 99.8 9.9E-19 3.4E-23 132.9 14.2 83 272-357 19-101 (109)
84 2dhg_A TRNA selenocysteine ass 99.8 1.6E-19 5.6E-24 136.1 9.7 86 273-359 7-94 (104)
85 2x1f_A MRNA 3'-END-processing 99.8 1.3E-19 4.6E-24 134.3 9.0 84 101-184 2-85 (96)
86 1p27_B RNA-binding protein 8A; 99.8 2E-19 6.8E-24 136.1 10.1 85 272-356 20-104 (106)
87 4a8x_A RNA-binding protein wit 99.8 1.9E-19 6.5E-24 131.3 9.4 82 275-356 4-86 (88)
88 2la6_A RNA-binding protein FUS 99.8 2.1E-19 7.2E-24 134.1 9.8 83 271-353 9-99 (99)
89 3p5t_L Cleavage and polyadenyl 99.8 9.2E-20 3.1E-24 133.4 7.6 80 102-181 2-83 (90)
90 3ex7_B RNA-binding protein 8A; 99.8 3E-19 1E-23 139.7 11.0 87 272-358 19-105 (126)
91 2cqc_A Arginine/serine-rich sp 99.8 3.5E-19 1.2E-23 131.9 10.9 84 97-180 11-94 (95)
92 1whw_A Hypothetical protein ri 99.8 3.8E-19 1.3E-23 132.7 11.1 86 98-183 5-90 (99)
93 2dh8_A DAZ-associated protein 99.8 2.5E-19 8.7E-24 135.3 9.8 87 272-359 13-99 (105)
94 2wbr_A GW182, gawky, LD47780P; 99.8 3.5E-19 1.2E-23 125.2 9.7 73 275-353 7-79 (89)
95 2kt5_A RNA and export factor-b 99.8 2.1E-18 7.3E-23 134.3 15.3 87 270-357 30-116 (124)
96 2la6_A RNA-binding protein FUS 99.8 4.7E-19 1.6E-23 132.2 11.1 84 96-179 8-99 (99)
97 2div_A TRNA selenocysteine ass 99.8 2.1E-19 7.2E-24 134.2 9.1 85 273-357 7-96 (99)
98 1x4d_A Matrin 3; structural ge 99.8 3.1E-19 1.1E-23 132.2 9.9 79 273-357 13-94 (102)
99 2e5h_A Zinc finger CCHC-type a 99.8 4E-19 1.4E-23 131.3 10.5 83 97-179 12-94 (94)
100 2do0_A HnRNP M, heterogeneous 99.8 1.5E-18 5.2E-23 133.1 13.9 84 273-357 13-96 (114)
101 3ucg_A Polyadenylate-binding p 99.8 3.9E-19 1.3E-23 129.9 10.0 80 275-355 6-85 (89)
102 1x4b_A Heterogeneous nuclear r 99.8 4E-19 1.4E-23 136.7 10.5 86 272-358 24-109 (116)
103 2dgs_A DAZ-associated protein 99.8 6.2E-19 2.1E-23 131.6 11.3 84 98-182 7-90 (99)
104 2do4_A Squamous cell carcinoma 99.8 8.6E-19 3E-23 131.0 11.9 83 98-181 14-96 (100)
105 2jrs_A RNA-binding protein 39; 99.8 4.5E-19 1.5E-23 134.2 10.4 85 97-181 22-106 (108)
106 2kxn_B Transformer-2 protein h 99.8 2.9E-19 9.8E-24 139.6 9.5 85 272-356 43-127 (129)
107 3ns6_A Eukaryotic translation 99.8 8.6E-20 2.9E-24 136.2 6.2 82 100-181 5-93 (100)
108 2khc_A Testis-specific RNP-typ 99.8 6E-19 2.1E-23 136.2 11.1 82 272-353 37-118 (118)
109 2cq1_A PTB-like protein L; RRM 99.8 1.5E-18 5.1E-23 128.7 12.7 82 272-359 12-95 (101)
110 2dis_A Unnamed protein product 99.8 1.2E-18 4E-23 132.6 12.4 85 274-358 7-95 (109)
111 2cqp_A RNA-binding protein 12; 99.8 3.3E-19 1.1E-23 132.8 9.2 84 272-355 12-95 (98)
112 2cq0_A Eukaryotic translation 99.8 4.5E-19 1.6E-23 133.4 10.0 84 98-181 12-95 (103)
113 2cpi_A CCR4-NOT transcription 99.8 6.2E-19 2.1E-23 134.3 10.9 83 274-356 14-102 (111)
114 1s79_A Lupus LA protein; RRM, 99.8 2.5E-19 8.6E-24 133.8 8.4 79 274-354 10-88 (103)
115 1x5u_A Splicing factor 3B subu 99.8 6.4E-19 2.2E-23 133.1 10.7 86 97-182 11-96 (105)
116 2ywk_A Putative RNA-binding pr 99.8 4.9E-19 1.7E-23 131.1 9.9 82 272-354 13-94 (95)
117 1p27_B RNA-binding protein 8A; 99.8 7.2E-19 2.5E-23 133.0 10.8 83 99-181 21-103 (106)
118 3q2s_C Cleavage and polyadenyl 99.8 2.1E-19 7.2E-24 154.7 8.8 81 100-180 67-149 (229)
119 1x5s_A Cold-inducible RNA-bind 99.8 5.2E-19 1.8E-23 132.8 9.8 84 98-181 9-92 (102)
120 2cpz_A CUG triplet repeat RNA- 99.8 6.9E-19 2.4E-23 135.2 10.6 85 98-182 22-106 (115)
121 2dgo_A Cytotoxic granule-assoc 99.8 1.1E-18 3.7E-23 134.1 11.7 85 98-182 12-96 (115)
122 1s79_A Lupus LA protein; RRM, 99.8 4.6E-19 1.6E-23 132.4 9.2 80 99-180 9-88 (103)
123 2dgu_A Heterogeneous nuclear r 99.8 2.9E-18 1E-22 128.8 13.8 79 273-359 9-87 (103)
124 2dnq_A RNA-binding protein 4B; 99.8 1.3E-18 4.4E-23 127.3 11.5 78 273-358 6-83 (90)
125 2cq4_A RNA binding motif prote 99.8 3.5E-19 1.2E-23 136.6 8.8 85 273-358 23-107 (114)
126 2dgv_A HnRNP M, heterogeneous 99.8 5.4E-19 1.8E-23 130.1 9.4 83 273-357 6-88 (92)
127 1x4h_A RNA-binding protein 28; 99.8 9.7E-19 3.3E-23 133.5 11.1 85 97-181 11-101 (111)
128 1wex_A Hypothetical protein (r 99.8 1.2E-18 4.2E-23 130.0 11.4 81 273-359 13-95 (104)
129 1x4c_A Splicing factor, argini 99.8 3.6E-18 1.2E-22 129.4 14.2 78 274-358 14-96 (108)
130 2dnm_A SRP46 splicing factor; 99.8 5.1E-19 1.8E-23 133.1 9.3 84 98-181 10-93 (103)
131 1x5t_A Splicing factor 3B subu 99.8 4.3E-19 1.5E-23 131.7 8.7 83 99-181 3-86 (96)
132 2rs2_A Musashi-1, RNA-binding 99.8 1.2E-18 4E-23 132.2 11.2 85 273-358 23-107 (109)
133 3s7r_A Heterogeneous nuclear r 99.8 1.3E-18 4.4E-23 126.5 11.0 80 98-178 8-87 (87)
134 2cpf_A RNA binding motif prote 99.8 7E-19 2.4E-23 131.0 9.6 84 99-182 3-89 (98)
135 2cqb_A Peptidyl-prolyl CIS-tra 99.8 5.1E-19 1.7E-23 132.9 8.9 84 98-181 9-92 (102)
136 2mss_A Protein (musashi1); RNA 99.8 3.4E-19 1.2E-23 125.7 7.4 75 277-352 1-75 (75)
137 2err_A Ataxin-2-binding protei 99.8 9.2E-19 3.1E-23 132.8 10.2 83 271-355 25-107 (109)
138 2kxn_B Transformer-2 protein h 99.8 8.5E-19 2.9E-23 136.9 10.2 86 96-181 41-126 (129)
139 2cqg_A TDP-43, TAR DNA-binding 99.8 2.8E-18 9.6E-23 129.0 12.8 85 272-358 12-96 (103)
140 1sjq_A Polypyrimidine tract-bi 99.8 6.5E-19 2.2E-23 130.3 8.9 79 97-181 12-92 (105)
141 2j76_E EIF-4B, EIF4B, eukaryot 99.8 3.5E-19 1.2E-23 133.0 7.6 83 272-356 16-99 (100)
142 3ulh_A THO complex subunit 4; 99.8 1.1E-18 3.8E-23 132.2 10.4 81 272-353 26-106 (107)
143 3s7r_A Heterogeneous nuclear r 99.8 1.1E-18 3.6E-23 127.0 9.8 79 273-352 9-87 (87)
144 2dgt_A RNA-binding protein 30; 99.8 4.6E-18 1.6E-22 124.9 13.3 79 272-358 7-85 (92)
145 2cph_A RNA binding motif prote 99.8 1.4E-18 4.9E-23 131.7 10.8 86 98-183 12-99 (107)
146 2ek1_A RNA-binding protein 12; 99.8 3.7E-19 1.3E-23 131.8 7.2 81 274-354 14-94 (95)
147 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.3E-18 4.6E-23 142.5 11.3 84 98-181 69-152 (165)
148 2ywk_A Putative RNA-binding pr 99.8 1.4E-18 4.8E-23 128.6 10.3 82 98-180 13-94 (95)
149 2fc9_A NCL protein; structure 99.8 3.5E-18 1.2E-22 128.0 12.6 82 272-357 12-93 (101)
150 3n9u_C Cleavage and polyadenyl 99.8 7.4E-19 2.5E-23 141.8 9.4 82 275-356 55-138 (156)
151 2ad9_A Polypyrimidine tract-bi 99.8 1.3E-18 4.5E-23 132.1 10.1 82 272-359 28-111 (119)
152 3n9u_C Cleavage and polyadenyl 99.8 1.2E-18 4.1E-23 140.5 10.5 82 100-181 54-137 (156)
153 3r27_A HnRNP L, heterogeneous 99.8 1.6E-18 5.5E-23 126.8 10.1 78 98-181 18-97 (100)
154 2div_A TRNA selenocysteine ass 99.8 1.2E-18 4E-23 130.1 9.5 84 98-181 6-94 (99)
155 2dnh_A Bruno-like 5, RNA bindi 99.8 2.7E-18 9.2E-23 129.6 11.6 83 98-181 12-97 (105)
156 1p1t_A Cleavage stimulation fa 99.8 3.3E-19 1.1E-23 134.4 6.5 85 274-358 7-91 (104)
157 1wg5_A Heterogeneous nuclear r 99.8 3E-18 1E-22 128.8 11.8 83 273-357 13-96 (104)
158 3ucg_A Polyadenylate-binding p 99.8 1.5E-18 5.1E-23 126.8 9.8 80 101-181 6-85 (89)
159 2d9p_A Polyadenylate-binding p 99.8 2E-18 7E-23 129.8 10.8 82 98-181 12-93 (103)
160 1oo0_B CG8781-PA, drosophila Y 99.8 1.4E-18 4.9E-23 132.3 10.0 84 98-181 23-106 (110)
161 2dgp_A Bruno-like 4, RNA bindi 99.8 1.2E-18 4.2E-23 131.7 9.6 85 98-182 10-97 (106)
162 1x4e_A RNA binding motif, sing 99.8 1.7E-19 6E-24 130.5 4.6 80 274-353 4-83 (85)
163 3ulh_A THO complex subunit 4; 99.8 2.8E-18 9.5E-23 130.0 11.4 82 97-179 25-106 (107)
164 2fy1_A RNA-binding motif prote 99.8 1.9E-18 6.6E-23 132.5 10.6 83 98-181 4-86 (116)
165 1x4e_A RNA binding motif, sing 99.8 3.1E-19 1.1E-23 129.2 5.9 82 98-179 2-83 (85)
166 2jvr_A Nucleolar protein 3; RN 99.8 2.5E-18 8.5E-23 129.6 10.7 77 275-355 28-105 (111)
167 2cpy_A RNA-binding protein 12; 99.8 7.6E-19 2.6E-23 134.5 7.9 84 273-358 13-97 (114)
168 1x4g_A Nucleolysin TIAR; struc 99.8 4E-18 1.4E-22 129.5 11.8 79 274-358 24-102 (109)
169 1wez_A HnRNP H', FTP-3, hetero 99.8 6.9E-19 2.4E-23 131.5 7.4 81 273-356 13-93 (102)
170 2hvz_A Splicing factor, argini 99.8 2.4E-18 8.2E-23 128.9 10.3 77 276-357 1-77 (101)
171 2ek1_A RNA-binding protein 12; 99.8 7E-19 2.4E-23 130.3 7.3 82 99-180 13-94 (95)
172 2dhg_A TRNA selenocysteine ass 99.8 2.2E-18 7.4E-23 129.9 10.1 83 98-181 6-90 (104)
173 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 4.3E-18 1.5E-22 135.8 12.4 82 271-352 59-140 (140)
174 2jwn_A Embryonic polyadenylate 99.8 1.7E-18 5.7E-23 135.0 9.8 83 274-357 35-117 (124)
175 2nlw_A Eukaryotic translation 99.8 2.2E-18 7.5E-23 129.8 10.0 81 274-356 14-101 (105)
176 2khc_A Testis-specific RNP-typ 99.8 1.3E-18 4.3E-23 134.4 8.9 81 98-178 37-117 (118)
177 2wbr_A GW182, gawky, LD47780P; 99.8 2.5E-18 8.5E-23 120.8 9.5 75 99-179 5-79 (89)
178 2mss_A Protein (musashi1); RNA 99.8 8.1E-19 2.8E-23 123.7 7.2 75 103-178 1-75 (75)
179 2dgw_A Probable RNA-binding pr 99.8 3.3E-18 1.1E-22 125.5 10.7 81 273-356 8-88 (91)
180 4a8x_A RNA-binding protein wit 99.8 1.6E-18 5.3E-23 126.5 8.9 81 100-180 3-84 (88)
181 2dng_A Eukaryotic translation 99.8 2.5E-18 8.5E-23 129.2 10.2 82 98-181 12-93 (103)
182 2dnn_A RNA-binding protein 12; 99.8 3.2E-18 1.1E-22 128.8 10.6 82 273-357 14-95 (109)
183 1x4f_A Matrin 3; structural ge 99.8 1.8E-18 6.3E-23 129.8 9.2 82 272-359 22-106 (112)
184 2ki2_A SS-DNA binding protein 99.8 3.6E-19 1.2E-23 130.4 5.2 81 276-357 2-82 (90)
185 2cpe_A RNA-binding protein EWS 99.8 2E-18 6.8E-23 132.2 9.6 85 98-182 12-104 (113)
186 2a3j_A U1 small nuclear ribonu 99.8 2.8E-18 9.6E-23 132.8 10.4 83 273-358 27-113 (127)
187 2cpd_A Apobec-1 stimulating pr 99.8 1.3E-17 4.5E-22 124.3 13.7 79 271-357 11-91 (99)
188 2dnp_A RNA-binding protein 14; 99.8 6E-18 2.1E-22 123.7 11.7 77 273-357 7-83 (90)
189 1uaw_A Mouse-musashi-1; RNP-ty 99.8 6.5E-19 2.2E-23 124.9 6.3 76 276-352 1-76 (77)
190 1wf1_A RNA-binding protein RAL 99.8 6E-18 2.1E-22 128.7 12.0 77 273-357 25-102 (110)
191 2dh8_A DAZ-associated protein 99.8 1.5E-18 5.2E-23 131.0 8.6 84 98-182 13-96 (105)
192 2rs2_A Musashi-1, RNA-binding 99.8 2.1E-18 7.2E-23 130.7 9.3 85 96-181 20-104 (109)
193 1p1t_A Cleavage stimulation fa 99.8 1.9E-18 6.5E-23 130.2 9.0 81 101-181 8-88 (104)
194 2cpj_A Non-POU domain-containi 99.8 4.4E-18 1.5E-22 126.9 10.9 80 272-357 12-91 (99)
195 2dgv_A HnRNP M, heterogeneous 99.8 4.1E-18 1.4E-22 125.3 10.6 82 98-181 5-86 (92)
196 2fc8_A NCL protein; structure 99.8 3.9E-18 1.3E-22 128.0 10.6 84 271-357 11-94 (102)
197 2cpx_A Hypothetical protein FL 99.8 1.1E-18 3.7E-23 134.2 7.7 88 272-359 22-109 (115)
198 2hvz_A Splicing factor, argini 99.8 1.7E-18 5.7E-23 129.7 8.5 84 102-190 1-100 (101)
199 1x4d_A Matrin 3; structural ge 99.8 1.3E-18 4.5E-23 128.8 7.5 81 99-185 13-96 (102)
200 2cqp_A RNA-binding protein 12; 99.8 1.4E-18 4.8E-23 129.4 7.7 83 98-180 12-94 (98)
201 2cqd_A RNA-binding region cont 99.8 3.2E-18 1.1E-22 131.6 9.9 82 98-180 14-95 (116)
202 3ex7_B RNA-binding protein 8A; 99.8 3.6E-18 1.2E-22 133.5 10.2 84 98-181 19-102 (126)
203 1u6f_A Tcubp1, RNA-binding pro 99.8 4.1E-18 1.4E-22 135.6 10.7 84 98-181 39-122 (139)
204 1why_A Hypothetical protein ri 99.8 6.8E-18 2.3E-22 125.3 11.1 79 273-357 15-95 (97)
205 1wi8_A EIF-4B, eukaryotic tran 99.8 2.9E-18 9.9E-23 129.1 9.2 81 99-181 13-94 (104)
206 1uaw_A Mouse-musashi-1; RNP-ty 99.8 9.4E-19 3.2E-23 124.1 6.2 76 102-178 1-76 (77)
207 2cq3_A RNA-binding protein 9; 99.8 7.9E-18 2.7E-22 126.5 11.6 83 97-181 11-93 (103)
208 1fj7_A Nucleolin RBD1, protein 99.8 8.8E-19 3E-23 131.3 6.2 84 273-358 15-98 (101)
209 2kt5_A RNA and export factor-b 99.8 7.9E-18 2.7E-22 131.0 11.6 84 98-182 32-115 (124)
210 1h2v_Z 20 kDa nuclear CAP bind 99.7 7.3E-18 2.5E-22 136.9 11.8 85 97-181 35-119 (156)
211 2cqi_A Nucleolysin TIAR; RNA r 99.7 8.3E-18 2.8E-22 126.4 11.3 82 98-181 12-93 (103)
212 2dgw_A Probable RNA-binding pr 99.7 6.7E-18 2.3E-22 123.8 10.4 81 98-181 7-87 (91)
213 2xnq_A Nuclear polyadenylated 99.7 9.2E-18 3.1E-22 124.3 11.2 77 271-355 18-95 (97)
214 2hgn_A Heterogeneous nuclear r 99.7 5.6E-19 1.9E-23 138.8 4.8 81 273-356 44-124 (139)
215 2dgx_A KIAA0430 protein; RRM d 99.7 6.8E-18 2.3E-22 124.9 10.4 80 99-181 7-90 (96)
216 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.7E-18 5.7E-23 129.3 7.0 82 98-181 16-98 (100)
217 2jvo_A Nucleolar protein 3; nu 99.7 5E-18 1.7E-22 128.3 9.7 80 270-357 26-105 (108)
218 2do0_A HnRNP M, heterogeneous 99.7 1.1E-17 3.9E-22 128.2 11.7 82 98-180 12-93 (114)
219 2kvi_A Nuclear polyadenylated 99.7 2.7E-18 9.3E-23 127.1 7.9 78 273-358 8-86 (96)
220 2hgl_A HNRPF protein, heteroge 99.7 2.4E-18 8.3E-23 134.7 8.0 82 98-181 41-125 (136)
221 1wez_A HnRNP H', FTP-3, hetero 99.7 2.9E-18 9.9E-23 128.1 8.0 81 97-180 11-91 (102)
222 2cqg_A TDP-43, TAR DNA-binding 99.7 1.3E-17 4.5E-22 125.3 11.6 83 98-182 12-94 (103)
223 2cpj_A Non-POU domain-containi 99.7 5.3E-18 1.8E-22 126.5 9.3 85 98-188 12-96 (99)
224 2cq4_A RNA binding motif prote 99.7 3E-18 1E-22 131.4 8.2 80 101-181 25-104 (114)
225 2cqh_A IGF-II mRNA-binding pro 99.7 5.7E-18 1.9E-22 124.7 9.3 78 273-357 6-85 (93)
226 1wg5_A Heterogeneous nuclear r 99.7 5.5E-18 1.9E-22 127.4 9.4 82 98-181 12-94 (104)
227 2krb_A Eukaryotic translation 99.7 1.6E-18 5.6E-23 124.0 6.1 73 276-350 2-81 (81)
228 2db1_A Heterogeneous nuclear r 99.7 1.1E-18 3.9E-23 134.2 5.6 81 274-356 16-99 (118)
229 1x5o_A RNA binding motif, sing 99.7 8.5E-18 2.9E-22 128.9 10.5 82 273-355 23-112 (114)
230 1iqt_A AUF1, heterogeneous nuc 99.7 2E-18 6.9E-23 121.7 6.3 75 277-352 1-75 (75)
231 2cpi_A CCR4-NOT transcription 99.7 5.5E-18 1.9E-22 129.0 9.2 86 98-183 12-103 (111)
232 2m2b_A RNA-binding protein 10; 99.7 2.7E-18 9.2E-23 134.9 7.6 83 99-182 21-109 (131)
233 1x4a_A Splicing factor, argini 99.7 1.2E-17 4E-22 126.9 10.9 81 98-181 19-99 (109)
234 2ytc_A PRE-mRNA-splicing facto 99.7 8.2E-18 2.8E-22 121.7 9.5 75 273-353 10-85 (85)
235 2dis_A Unnamed protein product 99.7 6.1E-18 2.1E-22 128.6 9.2 85 98-182 5-93 (109)
236 2hgl_A HNRPF protein, heteroge 99.7 2.1E-18 7.3E-23 135.1 6.8 81 274-356 43-126 (136)
237 2lcw_A RNA-binding protein FUS 99.6 1.4E-19 4.7E-24 139.3 0.0 84 274-357 6-97 (116)
238 2cpy_A RNA-binding protein 12; 99.7 2.5E-18 8.6E-23 131.6 7.0 82 98-181 12-94 (114)
239 2ad9_A Polypyrimidine tract-bi 99.7 6.6E-18 2.3E-22 128.2 9.2 79 97-181 27-107 (119)
240 2cq2_A Hypothetical protein LO 99.7 1.3E-17 4.3E-22 125.2 10.5 81 273-359 23-110 (114)
241 2db1_A Heterogeneous nuclear r 99.7 3.9E-18 1.3E-22 131.2 7.9 81 98-180 14-97 (118)
242 2krb_A Eukaryotic translation 99.7 2.3E-18 7.9E-23 123.2 6.2 73 101-175 1-80 (81)
243 2e5j_A Methenyltetrahydrofolat 99.7 8.9E-18 3E-22 124.7 9.4 79 273-356 17-95 (97)
244 2ki2_A SS-DNA binding protein 99.7 1E-18 3.5E-23 127.9 4.2 80 102-182 2-81 (90)
245 1whx_A Hypothetical protein ri 99.7 1.1E-17 3.8E-22 127.1 10.0 77 274-356 9-85 (111)
246 2lmi_A GRSF-1, G-rich sequence 99.7 9.2E-19 3.1E-23 132.4 4.0 82 273-356 9-93 (107)
247 2nlw_A Eukaryotic translation 99.7 5.3E-18 1.8E-22 127.7 8.0 79 100-180 14-99 (105)
248 1sjr_A Polypyrimidine tract-bi 99.7 1.9E-17 6.6E-22 132.0 11.6 81 273-357 44-126 (164)
249 3zzy_A Polypyrimidine tract-bi 99.7 1.8E-17 6E-22 127.4 10.9 81 273-358 26-109 (130)
250 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.1E-17 3.6E-22 133.5 10.1 81 98-178 60-140 (140)
251 1x4f_A Matrin 3; structural ge 99.7 4.4E-18 1.5E-22 127.7 7.2 84 98-187 22-108 (112)
252 2la4_A Nuclear and cytoplasmic 99.7 7.9E-18 2.7E-22 126.0 8.6 76 274-355 26-101 (101)
253 2err_A Ataxin-2-binding protei 99.7 7.7E-18 2.6E-22 127.7 8.5 83 97-181 25-107 (109)
254 1nu4_A U1A RNA binding domain; 99.7 6.8E-18 2.3E-22 125.4 8.1 82 273-357 6-91 (97)
255 1x4b_A Heterogeneous nuclear r 99.7 8.3E-18 2.8E-22 129.3 8.8 81 101-182 27-107 (116)
256 2cq1_A PTB-like protein L; RRM 99.7 1.6E-17 5.6E-22 123.1 10.0 77 99-181 13-91 (101)
257 2a3j_A U1 small nuclear ribonu 99.7 1.5E-17 5.2E-22 128.7 10.2 81 99-182 27-111 (127)
258 1fjc_A Nucleolin RBD2, protein 99.7 1.3E-17 4.3E-22 123.7 9.3 81 272-357 13-93 (96)
259 1wel_A RNA-binding protein 12; 99.7 2.8E-18 9.6E-23 133.5 6.0 84 272-356 22-105 (124)
260 2dnn_A RNA-binding protein 12; 99.7 7.5E-18 2.6E-22 126.8 8.1 78 101-181 16-93 (109)
261 2diu_A KIAA0430 protein; struc 99.7 3.1E-17 1.1E-21 116.3 10.6 74 276-359 10-88 (96)
262 1x5o_A RNA binding motif, sing 99.7 2.4E-17 8.2E-22 126.3 10.9 81 99-180 23-111 (114)
263 2kn4_A Immunoglobulin G-bindin 99.7 1.4E-17 4.9E-22 135.6 10.2 84 98-181 67-150 (158)
264 3lqv_A PRE-mRNA branch site pr 99.7 1.4E-17 4.6E-22 127.9 9.5 81 274-357 7-87 (115)
265 2jwn_A Embryonic polyadenylate 99.7 1.2E-17 4.2E-22 130.1 9.3 80 101-181 36-115 (124)
266 1wex_A Hypothetical protein (r 99.7 1.6E-17 5.6E-22 123.9 9.6 79 98-182 12-92 (104)
267 2jvr_A Nucleolar protein 3; RN 99.7 1E-17 3.6E-22 126.2 8.5 81 96-180 23-104 (111)
268 1iqt_A AUF1, heterogeneous nuc 99.7 3.5E-18 1.2E-22 120.4 5.3 75 103-178 1-75 (75)
269 2lea_A Serine/arginine-rich sp 99.7 3.8E-18 1.3E-22 134.5 5.9 83 99-181 45-127 (135)
270 1wel_A RNA-binding protein 12; 99.7 3.2E-18 1.1E-22 133.2 5.4 83 98-181 22-104 (124)
271 2lmi_A GRSF-1, G-rich sequence 99.7 4.2E-18 1.4E-22 128.8 5.5 81 98-180 8-91 (107)
272 1why_A Hypothetical protein ri 99.7 4.6E-17 1.6E-21 120.8 10.7 78 98-181 14-93 (97)
273 2dnq_A RNA-binding protein 4B; 99.7 4.3E-17 1.5E-21 119.2 10.3 77 98-182 5-81 (90)
274 1x5p_A Negative elongation fac 99.7 1.4E-16 4.8E-21 118.1 13.2 78 273-358 13-90 (97)
275 2la4_A Nuclear and cytoplasmic 99.7 3.5E-17 1.2E-21 122.5 9.5 79 96-180 22-100 (101)
276 2dha_A FLJ20171 protein; RRM d 99.7 1E-17 3.5E-22 128.7 6.7 81 98-180 20-104 (123)
277 2fc9_A NCL protein; structure 99.7 3.1E-17 1.1E-21 122.8 9.1 80 98-181 12-91 (101)
278 1wg1_A KIAA1579 protein, homol 99.7 3E-17 1E-21 119.3 8.7 83 99-188 3-85 (88)
279 2j8a_A Histone-lysine N-methyl 99.7 1.8E-17 6.2E-22 124.3 7.5 79 102-180 3-95 (136)
280 2j8a_A Histone-lysine N-methyl 99.7 1.9E-17 6.5E-22 124.2 7.5 80 276-355 3-96 (136)
281 2ytc_A PRE-mRNA-splicing facto 99.7 4.2E-17 1.4E-21 117.9 9.2 76 98-179 9-85 (85)
282 2e5i_A Heterogeneous nuclear r 99.7 8E-17 2.7E-21 123.3 11.1 79 273-357 23-104 (124)
283 2f3j_A RNA and export factor b 99.7 4.9E-17 1.7E-21 134.1 10.6 86 271-357 84-169 (177)
284 2xnq_A Nuclear polyadenylated 99.7 8.3E-17 2.8E-21 119.1 10.7 78 96-181 17-95 (97)
285 1wg1_A KIAA1579 protein, homol 99.7 6E-17 2E-21 117.8 9.6 75 275-356 5-79 (88)
286 2hgm_A HNRPF protein, heteroge 99.7 1.4E-17 4.6E-22 128.3 6.5 81 273-356 40-122 (126)
287 2e44_A Insulin-like growth fac 99.7 6.6E-17 2.3E-21 119.8 10.0 79 274-356 14-93 (96)
288 1fj7_A Nucleolin RBD1, protein 99.7 3.1E-18 1.1E-22 128.3 2.7 82 98-181 14-95 (101)
289 2xs2_A Deleted in azoospermia- 99.7 1.5E-17 5.3E-22 124.7 6.6 82 273-357 7-88 (102)
290 1nu4_A U1A RNA binding domain; 99.7 2.1E-17 7.1E-22 122.8 7.2 82 98-182 5-90 (97)
291 2diu_A KIAA0430 protein; struc 99.7 9.7E-17 3.3E-21 113.7 10.1 79 98-186 6-89 (96)
292 1x4c_A Splicing factor, argini 99.7 7.9E-17 2.7E-21 122.0 10.5 78 98-182 12-94 (108)
293 2fc8_A NCL protein; structure 99.7 5.9E-17 2E-21 121.5 9.7 83 97-182 11-93 (102)
294 1x4g_A Nucleolysin TIAR; struc 99.7 6.9E-17 2.3E-21 122.6 9.9 80 97-182 21-100 (109)
295 3beg_B Splicing factor, argini 99.7 4.9E-17 1.7E-21 124.4 9.1 74 275-355 16-94 (115)
296 2e5j_A Methenyltetrahydrofolat 99.7 5.1E-17 1.8E-21 120.5 8.7 79 98-181 16-94 (97)
297 2e5g_A U6 snRNA-specific termi 99.7 9.2E-17 3.2E-21 118.4 10.0 78 274-357 7-84 (94)
298 2hgm_A HNRPF protein, heteroge 99.7 1.9E-17 6.6E-22 127.4 6.5 80 98-180 39-120 (126)
299 3egn_A RNA-binding protein 40; 99.7 1.3E-17 4.3E-22 133.4 5.7 86 273-358 43-133 (143)
300 2f3j_A RNA and export factor b 99.7 6.8E-17 2.3E-21 133.2 10.2 85 98-183 85-169 (177)
301 2dha_A FLJ20171 protein; RRM d 99.7 1.6E-17 5.3E-22 127.7 5.6 81 275-357 23-107 (123)
302 3d2w_A TAR DNA-binding protein 99.7 1.3E-16 4.6E-21 115.8 10.3 76 273-357 9-86 (89)
303 1whx_A Hypothetical protein ri 99.7 4.3E-17 1.5E-21 123.8 7.8 75 100-180 9-83 (111)
304 2hgn_A Heterogeneous nuclear r 99.7 1.1E-17 3.9E-22 131.3 4.7 80 98-180 43-122 (139)
305 4f02_A Polyadenylate-binding p 99.7 8E-17 2.7E-21 137.9 10.4 85 273-357 13-97 (213)
306 2xs2_A Deleted in azoospermia- 99.7 1.8E-17 6.3E-22 124.3 5.6 80 100-182 8-87 (102)
307 2cpx_A Hypothetical protein FL 99.7 1.3E-17 4.4E-22 128.1 4.7 80 98-181 22-105 (115)
308 2pe8_A Splicing factor 45; RRM 99.7 1.2E-16 4.1E-21 119.4 9.8 83 273-355 6-94 (105)
309 2dgt_A RNA-binding protein 30; 99.7 1.5E-16 5E-21 116.8 10.2 78 97-182 6-83 (92)
310 2lcw_A RNA-binding protein FUS 99.5 2E-18 6.9E-23 132.7 0.0 83 99-181 5-95 (116)
311 2jvo_A Nucleolar protein 3; nu 99.7 1.1E-16 3.8E-21 120.9 9.5 78 96-181 26-103 (108)
312 2dnp_A RNA-binding protein 14; 99.7 1.4E-16 4.7E-21 116.4 9.8 77 97-181 5-81 (90)
313 1wf0_A TDP-43, TAR DNA-binding 99.7 7.7E-17 2.6E-21 117.3 8.2 78 274-358 4-81 (88)
314 2kvi_A Nuclear polyadenylated 99.7 1E-16 3.5E-21 118.6 8.3 76 98-181 7-83 (96)
315 1b7f_A Protein (SXL-lethal pro 99.7 1.8E-16 6.1E-21 130.6 10.6 83 275-357 3-85 (168)
316 2dgu_A Heterogeneous nuclear r 99.7 2.1E-16 7.3E-21 118.6 10.0 76 98-181 8-83 (103)
317 3tyt_A Heterogeneous nuclear r 99.7 2.1E-16 7.3E-21 133.8 10.8 77 275-356 4-81 (205)
318 1fxl_A Paraneoplastic encephal 99.7 2.4E-16 8.3E-21 129.6 10.7 83 275-357 2-84 (167)
319 1fjc_A Nucleolin RBD2, protein 99.7 6E-17 2.1E-21 120.0 6.2 78 99-181 14-91 (96)
320 2i2y_A Fusion protein consists 99.7 2E-16 6.9E-21 127.4 9.7 79 98-181 70-148 (150)
321 2cpd_A Apobec-1 stimulating pr 99.7 4.1E-16 1.4E-20 116.1 10.6 77 98-182 12-90 (99)
322 2e44_A Insulin-like growth fac 99.7 1.8E-16 6.2E-21 117.4 8.6 79 99-181 13-92 (96)
323 2dnl_A Cytoplasmic polyadenyla 99.7 2.9E-16 1E-20 120.0 9.4 78 99-179 6-86 (114)
324 2voo_A Lupus LA protein; RNA-b 99.7 4.4E-16 1.5E-20 130.4 11.3 120 235-356 64-188 (193)
325 2dnl_A Cytoplasmic polyadenyla 99.7 6.3E-16 2.2E-20 118.2 11.3 80 274-356 7-89 (114)
326 2hzc_A Splicing factor U2AF 65 99.7 5E-16 1.7E-20 112.7 9.9 72 273-351 4-86 (87)
327 2cq2_A Hypothetical protein LO 99.7 2.3E-16 7.7E-21 118.4 8.1 76 98-179 22-104 (114)
328 2e5g_A U6 snRNA-specific termi 99.7 3.9E-16 1.3E-20 115.0 9.2 78 98-181 5-82 (94)
329 3md3_A Nuclear and cytoplasmic 99.7 7.3E-16 2.5E-20 126.6 11.6 82 98-179 84-165 (166)
330 2cqh_A IGF-II mRNA-binding pro 99.6 2.6E-16 8.9E-21 115.7 7.8 77 98-181 5-83 (93)
331 1wf1_A RNA-binding protein RAL 99.6 3.8E-16 1.3E-20 118.7 8.4 74 99-180 25-99 (110)
332 2pe8_A Splicing factor 45; RRM 99.6 1.2E-15 4E-20 114.0 10.8 83 98-180 5-93 (105)
333 2g4b_A Splicing factor U2AF 65 99.6 8.1E-16 2.8E-20 127.1 10.7 80 99-178 92-171 (172)
334 3v4m_A Splicing factor U2AF 65 99.6 1.1E-15 3.6E-20 114.3 10.1 83 273-355 3-97 (105)
335 3egn_A RNA-binding protein 40; 99.6 4.5E-16 1.5E-20 124.3 8.7 80 98-180 42-129 (143)
336 3d2w_A TAR DNA-binding protein 99.6 7.4E-16 2.5E-20 111.9 9.0 76 97-181 7-84 (89)
337 1l3k_A Heterogeneous nuclear r 99.6 8.7E-16 3E-20 129.8 10.4 85 272-357 10-94 (196)
338 3pgw_S U1-70K; protein-RNA com 99.6 6.9E-16 2.4E-20 145.3 10.7 82 100-181 101-182 (437)
339 2hzc_A Splicing factor U2AF 65 99.6 5.5E-16 1.9E-20 112.5 7.8 71 100-177 5-86 (87)
340 3zzy_A Polypyrimidine tract-bi 99.6 1.4E-15 4.7E-20 116.8 10.2 76 101-181 28-106 (130)
341 2qfj_A FBP-interacting repress 99.6 1.6E-15 5.6E-20 130.2 11.6 83 99-181 123-205 (216)
342 3beg_B Splicing factor, argini 99.6 6.9E-16 2.4E-20 118.0 8.3 73 100-179 15-92 (115)
343 2bz2_A Negative elongation fac 99.6 8.8E-16 3E-20 118.2 8.9 77 273-357 37-113 (121)
344 1sjr_A Polypyrimidine tract-bi 99.6 1.6E-15 5.4E-20 121.0 10.5 77 101-181 46-124 (164)
345 2dit_A HIV TAT specific factor 99.6 3.7E-15 1.3E-19 113.4 12.3 83 273-359 13-106 (112)
346 1x5p_A Negative elongation fac 99.6 2.1E-15 7.2E-20 111.7 10.4 77 98-182 12-88 (97)
347 3u1l_A PRE-mRNA-splicing facto 99.6 1.4E-15 4.8E-20 129.9 10.1 81 271-357 130-231 (240)
348 2yh0_A Splicing factor U2AF 65 99.6 1.8E-15 6.2E-20 128.1 10.7 84 98-181 111-194 (198)
349 2cjk_A Nuclear polyadenylated 99.6 6.7E-16 2.3E-20 126.9 7.7 80 101-181 87-166 (167)
350 3pgw_A U1-A; protein-RNA compl 99.6 1.3E-14 4.4E-19 129.9 16.3 81 273-356 7-91 (282)
351 2e5i_A Heterogeneous nuclear r 99.6 4E-15 1.4E-19 113.9 10.7 74 103-182 27-103 (124)
352 2adc_A Polypyrimidine tract-bi 99.6 7.8E-15 2.7E-19 127.0 11.5 81 272-357 31-112 (229)
353 2voo_A Lupus LA protein; RNA-b 99.6 6.2E-15 2.1E-19 123.4 10.2 78 101-180 109-186 (193)
354 3sde_A Paraspeckle component 1 99.6 8.8E-15 3E-19 129.3 11.4 82 268-355 15-96 (261)
355 2bz2_A Negative elongation fac 99.6 6.3E-15 2.2E-19 113.4 9.0 77 97-181 35-111 (121)
356 3nmr_A Cugbp ELAV-like family 99.6 1.1E-14 3.7E-19 120.6 11.1 78 100-178 94-174 (175)
357 1wf0_A TDP-43, TAR DNA-binding 99.6 1.5E-15 5.2E-20 110.3 4.9 77 99-182 3-79 (88)
358 1qm9_A Polypyrimidine tract-bi 99.6 1.4E-14 4.8E-19 122.6 10.5 77 276-357 4-81 (198)
359 3ue2_A Poly(U)-binding-splicin 99.6 6.7E-15 2.3E-19 112.0 7.2 81 274-354 19-108 (118)
360 2dit_A HIV TAT specific factor 99.5 3.1E-14 1.1E-18 108.2 10.2 85 96-184 10-105 (112)
361 1jmt_A Splicing factor U2AF 35 99.5 4.3E-15 1.5E-19 110.9 5.1 73 280-353 20-104 (104)
362 3u1l_A PRE-mRNA-splicing facto 99.5 1.4E-14 4.8E-19 123.7 8.5 79 98-182 131-230 (240)
363 1fje_B Nucleolin RBD12, protei 99.5 1.7E-14 5.9E-19 119.4 8.3 77 100-181 98-174 (175)
364 3v4m_A Splicing factor U2AF 65 99.5 3.5E-14 1.2E-18 106.1 8.4 81 100-180 4-96 (105)
365 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.5E-13 5.2E-18 101.1 11.3 66 285-357 27-92 (100)
366 3s6e_A RNA-binding protein 39; 99.5 1.3E-13 4.5E-18 104.1 10.0 79 273-355 5-93 (114)
367 3ue2_A Poly(U)-binding-splicin 99.5 8.7E-14 3E-18 105.8 8.5 81 100-180 19-108 (118)
368 1jmt_A Splicing factor U2AF 35 99.5 1.9E-14 6.5E-19 107.4 4.2 72 106-178 20-103 (104)
369 3tht_A Alkylated DNA repair pr 99.4 5.4E-13 1.8E-17 120.2 10.0 76 272-353 15-97 (345)
370 3s6e_A RNA-binding protein 39; 99.3 6.3E-12 2.2E-16 94.8 9.3 78 98-179 4-91 (114)
371 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.4E-11 4.8E-16 90.5 10.4 74 101-181 10-90 (100)
372 2dnr_A Synaptojanin-1; RRM dom 99.3 1.2E-11 4E-16 86.9 9.4 74 273-355 5-86 (91)
373 3tht_A Alkylated DNA repair pr 99.3 4.5E-12 1.5E-16 114.2 9.0 76 98-179 15-97 (345)
374 1owx_A Lupus LA protein, SS-B, 99.3 2E-11 6.9E-16 91.9 9.4 77 272-354 15-95 (121)
375 2dnr_A Synaptojanin-1; RRM dom 99.2 7.9E-11 2.7E-15 82.7 7.9 73 99-180 5-85 (91)
376 1owx_A Lupus LA protein, SS-B, 99.2 1.1E-10 3.8E-15 87.9 8.9 75 99-179 16-94 (121)
377 1ufw_A Synaptojanin 2; RNP dom 99.1 1.3E-10 4.5E-15 81.9 6.7 74 272-354 12-94 (95)
378 1ufw_A Synaptojanin 2; RNP dom 99.0 6.6E-10 2.3E-14 78.4 6.4 74 97-179 11-93 (95)
379 3dxb_A Thioredoxin N-terminall 98.9 1.2E-09 3.9E-14 93.8 7.4 68 287-354 141-212 (222)
380 3dxb_A Thioredoxin N-terminall 98.9 6.4E-09 2.2E-13 89.2 9.1 81 100-180 123-212 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.8 2.3E-08 7.8E-13 71.8 8.8 71 276-352 22-97 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.6 2.5E-07 8.6E-12 66.4 8.3 72 100-177 20-96 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.4 6.9E-06 2.4E-10 58.6 10.9 86 100-194 7-99 (104)
384 1wey_A Calcipressin 1; structu 98.3 4.6E-06 1.6E-10 59.9 8.8 74 276-355 6-84 (104)
385 2dhx_A Poly (ADP-ribose) polym 97.8 0.00051 1.7E-08 49.1 11.8 77 274-359 7-88 (104)
386 1uw4_A UPF3X; nonsense mediate 97.8 0.00015 5.3E-09 51.2 8.7 79 276-354 2-87 (91)
387 1wey_A Calcipressin 1; structu 97.8 3.9E-05 1.3E-09 55.1 5.6 74 101-180 5-83 (104)
388 1uw4_A UPF3X; nonsense mediate 97.7 0.00011 3.8E-09 51.9 7.5 69 102-170 2-72 (91)
389 1wwh_A Nucleoporin 35, nucleop 97.4 0.0012 4E-08 48.9 8.7 71 275-353 24-95 (119)
390 1whv_A Poly(A)-specific ribonu 97.3 0.00064 2.2E-08 47.9 6.7 54 276-338 17-70 (100)
391 2l08_A Regulator of nonsense t 97.3 0.00077 2.6E-08 47.8 7.2 78 276-353 10-94 (97)
392 1whv_A Poly(A)-specific ribonu 97.3 0.00078 2.7E-08 47.5 7.1 58 98-164 13-70 (100)
393 3ctr_A Poly(A)-specific ribonu 97.2 0.00061 2.1E-08 48.2 5.0 54 276-338 7-60 (101)
394 1wwh_A Nucleoporin 35, nucleop 97.1 0.0018 6E-08 48.0 7.3 71 100-178 23-94 (119)
395 2l08_A Regulator of nonsense t 96.9 0.001 3.5E-08 47.2 4.3 71 100-170 8-80 (97)
396 3ctr_A Poly(A)-specific ribonu 96.8 0.0019 6.4E-08 45.7 4.9 53 104-164 8-60 (101)
397 3p3d_A Nucleoporin 53; structu 96.5 0.0054 1.8E-07 46.0 5.8 78 276-355 8-99 (132)
398 3pq1_A Poly(A) RNA polymerase; 95.8 0.0049 1.7E-07 57.5 3.2 55 276-336 54-108 (464)
399 3pq1_A Poly(A) RNA polymerase; 95.7 0.0058 2E-07 57.0 3.5 55 101-161 53-107 (464)
400 3p3d_A Nucleoporin 53; structu 95.2 0.021 7.1E-07 42.8 4.3 78 100-179 6-97 (132)
401 3d45_A Poly(A)-specific ribonu 89.7 1.2 4E-05 42.4 8.7 56 274-338 439-494 (507)
402 3d45_A Poly(A)-specific ribonu 87.6 1.4 5E-05 41.8 7.8 55 102-165 441-495 (507)
403 2g0c_A ATP-dependent RNA helic 73.5 8.4 0.00029 25.6 5.6 60 285-353 11-75 (76)
404 2pk2_A Cyclin-T1, protein TAT; 70.9 0.86 2.9E-05 41.3 0.0 14 286-299 228-241 (358)
405 4eyt_A Telomerase associated p 63.0 33 0.0011 23.3 8.6 59 99-165 10-68 (129)
406 4eyt_A Telomerase associated p 62.4 34 0.0012 23.3 8.1 54 276-337 13-66 (129)
407 4e8u_A Putative uncharacterize 56.5 12 0.00041 29.4 4.1 51 276-329 13-74 (172)
408 2g0c_A ATP-dependent RNA helic 49.4 52 0.0018 21.5 6.6 67 103-178 2-74 (76)
409 4e8u_A Putative uncharacterize 41.8 60 0.0021 25.5 5.9 55 103-160 14-80 (172)
410 2i9x_A Putative septation prot 28.9 79 0.0027 21.6 4.1 25 127-151 5-29 (87)
411 3fry_A Probable copper-exporti 25.8 1.3E+02 0.0044 18.9 6.0 54 276-336 7-60 (73)
412 2ia9_A Putative septation prot 25.2 96 0.0033 21.8 4.1 25 127-151 5-29 (100)
413 2i9z_A Putative septation prot 24.9 1E+02 0.0034 22.0 4.2 25 127-151 5-29 (105)
414 3j21_T 50S ribosomal protein L 23.5 1.8E+02 0.0061 19.8 5.9 56 103-161 24-81 (86)
415 3ts2_A Protein LIN-28 homolog 22.5 19 0.00065 27.7 0.1 28 290-325 2-29 (148)
416 3lpe_A Putative transcription 21.5 2E+02 0.0069 19.6 6.3 33 302-339 40-72 (92)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=4.3e-46 Score=337.49 Aligned_cols=252 Identities=19% Similarity=0.331 Sum_probs=214.6
Q ss_pred hhcCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceE
Q 015292 94 LLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (409)
Q Consensus 94 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l 173 (409)
....++..++|||+|||+++|+++|+++|+.||+|..|+|+++..+ ++|||||+|.+.++|.+|++ +++..+.|+.|
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i 110 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEI 110 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEEC
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEE
Confidence 3445667899999999999999999999999999999999998643 58999999999999999995 99999999999
Q ss_pred EEeecccccccccCCCCCCCChHHHHHHHHhhC-CceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccC
Q 015292 174 RCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKL 252 (409)
Q Consensus 174 ~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~ 252 (409)
.|.++. ..+|||+|||+.+++++|..+|+.+| . |..+.++.+ ..+.++|||||.|.+.+.|..|+..|++. .+
T Consensus 111 ~v~~~~-~~~l~v~nlp~~~t~~~l~~~f~~~G~~-i~~v~i~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~ 184 (292)
T 2ghp_A 111 IVSHLT-ECTLWMTNFPPSYTQRNIRDLLQDINVV-ALSIRLPSL--RFNTSRRFAYIDVTSKEDARYCVEKLNGL--KI 184 (292)
T ss_dssp EEEECC-SCEEEEECCCTTCCHHHHHHHHHHTTCC-CCEEECC---------CCEEEEECSSHHHHHHHHHHHTTC--EE
T ss_pred EEEECC-CCEEEEECCCCCCCHHHHHHHHHHhCCC-eEEEEEEeC--CCCCcceEEEEEECCHHHHHHHHHHhCCC--Ee
Confidence 999874 67899999999999999999999999 7 999999887 33788999999999999999999999986 45
Q ss_pred CCCCcceecCCCCCCCC---CCCccceEEEEcCCCCC-CCHHHHHHHHhhcCceeEEeeCCCCC-CCCCCcEEEEEeCCH
Q 015292 253 GTNAPTVSWADPRNVDS---SGASQVKAVYVKNLPRN-VTQDQLKKLFEHHGRITKVVVPPAKP-GQEKNRIGFVHFAER 327 (409)
Q Consensus 253 ~~~~~~~~~~~~~~~~~---~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~~~g~afV~F~~~ 327 (409)
.++.+.+.++.+..... ......++|||+|||+. +++++|+++|++||.|..|+|+++.. ++.++|||||+|.+.
T Consensus 185 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 185 EGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp TTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred CCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 78999999988765432 23456789999999999 99999999999999999999999887 355689999999999
Q ss_pred HHHHHHHHHhCCceecCeEEEEEecCCC
Q 015292 328 SSAMKALKNTEKYELDGQALECSLAKPQ 355 (409)
Q Consensus 328 e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (409)
++|.+|+ .|||..|.|++|.|.|+.++
T Consensus 265 ~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 265 DSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred HHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999999 99999999999999999875
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=3.7e-46 Score=336.53 Aligned_cols=247 Identities=19% Similarity=0.358 Sum_probs=226.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
..+++|||+|||+++|+++|+++|+.|| |..|++ +.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 3568999999999999999999999999 999988 456899999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcc
Q 015292 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (409)
Q Consensus 179 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (409)
....+|||+|||+.+++++|+.+|+.+|. |..+.++.+ ..++.++|||||.|.+.+.|..|+..+++. .+.++.+.
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~i~ 168 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGS-LERCFLVYS-ERTGQSKGYGFAEYMKKDSAARAKSDLLGK--PLGPRTLY 168 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCC-eeEEEEEee-CCCCccceEEEEEECCHHHHHHHHHHhCCC--EeCCcEEE
Confidence 99999999999999999999999999999 999999988 678899999999999999999999999986 55789999
Q ss_pred eecCCCCCCCCCCCccceEEEEcCCCCCC-CHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHh
Q 015292 259 VSWADPRNVDSSGASQVKAVYVKNLPRNV-TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (409)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~-t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l 337 (409)
+.++.+..... .....++|||+|||+.+ ++++|+++|+.||.|..++|+++..+ .++|+|||+|.+.++|.+|+..|
T Consensus 169 v~~a~~~~~~~-~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g-~~~g~afV~f~~~~~A~~A~~~l 246 (284)
T 3smz_A 169 VHWTDAGQLTP-ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDG-QLKGFAVLEYETAEMAEEAQQQA 246 (284)
T ss_dssp EEECCGGGCCT-TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSC-CEEEEEEEECSSHHHHHHHHHHH
T ss_pred EEECCCCCCCc-ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCC-CcccEEEEEeCCHHHHHHHHHHh
Confidence 99988765432 33456899999999995 99999999999999999999998754 45899999999999999999999
Q ss_pred CCceecCeEEEEEecCCCCcc
Q 015292 338 EKYELDGQALECSLAKPQADQ 358 (409)
Q Consensus 338 ~~~~~~g~~l~v~~a~~~~~~ 358 (409)
||..|+|++|+|.|+.++..+
T Consensus 247 ~g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 247 DGLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp TTCEETTEECEEEECCSSSCH
T ss_pred CCCccCCeEEEEEEecCCCcc
Confidence 999999999999999987653
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=3.2e-37 Score=265.41 Aligned_cols=171 Identities=25% Similarity=0.403 Sum_probs=152.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
+.+||||+|||+++|+++|+++|++||+|.+|+|++++.+|+++|||||+|.+.++|.+|++.+++..+.|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999987664
Q ss_pred cccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcce
Q 015292 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (409)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (409)
..... .
T Consensus 94 ~~~~~----------------------------------------------------------~---------------- 99 (213)
T 4f02_A 94 RDPSL----------------------------------------------------------R---------------- 99 (213)
T ss_dssp CCTHH----------------------------------------------------------H----------------
T ss_pred ccccc----------------------------------------------------------c----------------
Confidence 21100 0
Q ss_pred ecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCC
Q 015292 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (409)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~ 339 (409)
....++|||+|||+.+|+++|+++|++||.|..|+|+++..+ ++|||||+|.+.++|.+|+..|||
T Consensus 100 ------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~--~~g~~fV~f~~~~~a~~Ai~~lng 165 (213)
T 4f02_A 100 ------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNG 165 (213)
T ss_dssp ------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE--EEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCC--CceEEEEEeCCHHHHHHHHHHhCC
Confidence 001157999999999999999999999999999999987643 479999999999999999999999
Q ss_pred ceecCeEEEEEecCCCCcc
Q 015292 340 YELDGQALECSLAKPQADQ 358 (409)
Q Consensus 340 ~~~~g~~l~v~~a~~~~~~ 358 (409)
..|+|++|.|.+|.++..+
T Consensus 166 ~~~~g~~i~V~~a~~~~~~ 184 (213)
T 4f02_A 166 MLLNDRKVFVGRFKSRKER 184 (213)
T ss_dssp CEETTEECEEEECCCHHHH
T ss_pred CEECCEEEEEEEcCCCccc
Confidence 9999999999999886543
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=3.7e-35 Score=249.83 Aligned_cols=180 Identities=20% Similarity=0.409 Sum_probs=151.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe
Q 015292 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (409)
Q Consensus 97 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 176 (409)
.+...++|||+|||+++|+++|+++|+.||.|.+|+|++++.+|.++|||||+|.+.++|.+|++ +++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeee
Confidence 34567899999999999999999999999999999999999999999999999999999999996 58999999999998
Q ss_pred ecccccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCC
Q 015292 177 TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA 256 (409)
Q Consensus 177 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 256 (409)
++.+.... ..
T Consensus 88 ~~~~~~~~-------------------------------------~~--------------------------------- 97 (196)
T 1l3k_A 88 RAVSREDS-------------------------------------QR--------------------------------- 97 (196)
T ss_dssp ECCC----------------------------------------------------------------------------
T ss_pred cccCcccc-------------------------------------cc---------------------------------
Confidence 76532110 00
Q ss_pred cceecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 015292 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (409)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~ 336 (409)
.......++|||+|||+.+++++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+|+..
T Consensus 98 ------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 98 ------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp -----------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred ------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 00011226899999999999999999999999999999999988888899999999999999999986
Q ss_pred hCCceecCeEEEEEecCCCCccCC
Q 015292 337 TEKYELDGQALECSLAKPQADQKS 360 (409)
Q Consensus 337 l~~~~~~g~~l~v~~a~~~~~~~~ 360 (409)
++..|+|+.|.|.++.++.....
T Consensus 166 -~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 166 -KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp -SCCEETTEECEEEECC-------
T ss_pred -CCcEECCEEEEEEecCChhHhcc
Confidence 89999999999999998876543
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-35 Score=240.45 Aligned_cols=166 Identities=21% Similarity=0.361 Sum_probs=150.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecccc
Q 015292 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (409)
Q Consensus 102 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 181 (409)
++|||+|||+++|+++|+++|++||.|.+|+++.++. +.++|||||+|.+.++|.+|+..+++..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999875 789999999999999999999999999999999999876531
Q ss_pred cccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcceec
Q 015292 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (409)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (409)
..
T Consensus 80 ~~------------------------------------------------------------------------------ 81 (166)
T 3md3_A 80 QQ------------------------------------------------------------------------------ 81 (166)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 10
Q ss_pred CCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCce
Q 015292 262 ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~ 341 (409)
....+.++|||+|||..+++++|+++|++||.|..+.|+++..++.++|||||+|.+.++|.+|+..|||..
T Consensus 82 --------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 82 --------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp --------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred --------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 011123789999999999999999999999999999999998888889999999999999999999999999
Q ss_pred ecCeEEEEEecCC
Q 015292 342 LDGQALECSLAKP 354 (409)
Q Consensus 342 ~~g~~l~v~~a~~ 354 (409)
|+|++|+|.||++
T Consensus 154 ~~g~~i~v~~a~~ 166 (166)
T 3md3_A 154 LNGRPLRINWAAK 166 (166)
T ss_dssp ETTEECEEEESCC
T ss_pred cCCcEEEEEecCC
Confidence 9999999999974
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=3.2e-34 Score=237.49 Aligned_cols=164 Identities=24% Similarity=0.464 Sum_probs=150.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeeccc
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 180 (409)
+++|||+|||+++|+++|+++|+.||.|.+|++++++.+|.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999987653
Q ss_pred ccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCccee
Q 015292 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (409)
Q Consensus 181 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 260 (409)
...
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (167)
T 1fxl_A 82 SSA----------------------------------------------------------------------------- 84 (167)
T ss_dssp CCG-----------------------------------------------------------------------------
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 210
Q ss_pred cCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCc
Q 015292 261 WADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340 (409)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~ 340 (409)
....++|||+|||..+++++|+++|++||.|..++|+++..++.++|||||+|.+.++|.+|+..|||.
T Consensus 85 -----------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 153 (167)
T 1fxl_A 85 -----------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 153 (167)
T ss_dssp -----------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred -----------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Confidence 011268999999999999999999999999999999999877777999999999999999999999999
Q ss_pred eecCeE--EEEEec
Q 015292 341 ELDGQA--LECSLA 352 (409)
Q Consensus 341 ~~~g~~--l~v~~a 352 (409)
.|.|+. |+|.||
T Consensus 154 ~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 154 KPSGATEPITVKFA 167 (167)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCccceEEEeC
Confidence 999965 888886
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=4.6e-34 Score=246.89 Aligned_cols=180 Identities=21% Similarity=0.395 Sum_probs=153.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeeccc
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 180 (409)
.++|||+|||+++|+++|+++|+.||.|..|+|+++..+|.++|||||+|.+.++|.+|++.|++..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 58999999999999999999999999999999999988899999999999999999999999999999999999976653
Q ss_pred ccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCccee
Q 015292 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (409)
Q Consensus 181 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 260 (409)
.... .... ......
T Consensus 108 ~~~~----------~~~~----------------------------------------~~~~~~---------------- 121 (216)
T 2qfj_A 108 IGQA----------QPII----------------------------------------DQLAEE---------------- 121 (216)
T ss_dssp CGGG----------HHHH----------------------------------------HHHHHH----------------
T ss_pred cccc----------chhh----------------------------------------hhhhcc----------------
Confidence 2110 0000 000000
Q ss_pred cCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCc
Q 015292 261 WADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340 (409)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~ 340 (409)
....++|||+|||..+++++|+++|++||.|..|+|+++..++.++|||||+|.+.++|.+|+..|||.
T Consensus 122 -----------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~ 190 (216)
T 2qfj_A 122 -----------ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLF 190 (216)
T ss_dssp -----------HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred -----------cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCC
Confidence 011268999999999999999999999999999999999888888999999999999999999999999
Q ss_pred eecCeEEEEEecCCCCc
Q 015292 341 ELDGQALECSLAKPQAD 357 (409)
Q Consensus 341 ~~~g~~l~v~~a~~~~~ 357 (409)
.|+|+.|+|.|+.+...
T Consensus 191 ~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 191 DLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp BCSSSBCEEEECSSCSS
T ss_pred EeCCcEEEEEEecCCCC
Confidence 99999999999988644
No 8
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.6e-34 Score=239.65 Aligned_cols=165 Identities=26% Similarity=0.456 Sum_probs=151.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
+.++|||+|||+++|+++|+++|++||+|.+|++++++.+|.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998889999999999999999999999999999999999998765
Q ss_pred cccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcce
Q 015292 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (409)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (409)
+...
T Consensus 82 ~~~~---------------------------------------------------------------------------- 85 (168)
T 1b7f_A 82 PGGE---------------------------------------------------------------------------- 85 (168)
T ss_dssp CCSS----------------------------------------------------------------------------
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 3210
Q ss_pred ecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCC
Q 015292 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (409)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~ 339 (409)
....++|||+|||..+++++|+++|++||.|..+.|+++..++.++|||||+|.+.++|.+|+..|||
T Consensus 86 ------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 86 ------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp ------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 01126899999999999999999999999999999999987777799999999999999999999999
Q ss_pred ceecC--eEEEEEec
Q 015292 340 YELDG--QALECSLA 352 (409)
Q Consensus 340 ~~~~g--~~l~v~~a 352 (409)
..|.| ++|+|.||
T Consensus 154 ~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 154 VIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CEecCCCeEEEEEeC
Confidence 99988 99999986
No 9
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.2e-34 Score=240.03 Aligned_cols=165 Identities=19% Similarity=0.441 Sum_probs=148.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
++++|||+|||+++|+++|+++|++||.|.+|+|++++.+|.++|||||+|.+.++|.+|+. ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46899999999999999999999999999999999999899999999999999999999997 4678899998877654
Q ss_pred cccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcce
Q 015292 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (409)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (409)
+...
T Consensus 80 ~~~~---------------------------------------------------------------------------- 83 (167)
T 2cjk_A 80 PRDE---------------------------------------------------------------------------- 83 (167)
T ss_dssp CHHH----------------------------------------------------------------------------
T ss_pred chhh----------------------------------------------------------------------------
Confidence 2110
Q ss_pred ecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCC
Q 015292 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (409)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~ 339 (409)
....++|||+|||+.+++++|+++|++||.|..+.|+.++.++.++|||||+|.+.++|.+|+. +++
T Consensus 84 ------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~ 150 (167)
T 2cjk_A 84 ------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKF 150 (167)
T ss_dssp ------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSE
T ss_pred ------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCC
Confidence 0012689999999999999999999999999999999998888889999999999999999998 899
Q ss_pred ceecCeEEEEEecCCC
Q 015292 340 YELDGQALECSLAKPQ 355 (409)
Q Consensus 340 ~~~~g~~l~v~~a~~~ 355 (409)
..|+|++|.|.||.++
T Consensus 151 ~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 151 IDFKDRKIEIKRAEPR 166 (167)
T ss_dssp ECSSSSCEEEEECCCC
T ss_pred EEeCCeEEEEeecCCC
Confidence 9999999999999875
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=4.2e-33 Score=232.67 Aligned_cols=166 Identities=20% Similarity=0.402 Sum_probs=144.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCC--CceeeEEEEecCHHHHHHHHHHhCCCccC---CceEE
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS--ENKGFAFVTFRNVELASKAIDKLNNTEFK---GKKIR 174 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g--~~~g~afV~F~~~~~A~~a~~~l~~~~~~---g~~l~ 174 (409)
+.++|||+|||+++|+++|+++|++||+|.+|+|++++.++ +++|||||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999998876 89999999999999999999999998765 45555
Q ss_pred EeecccccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCC
Q 015292 175 CSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGT 254 (409)
Q Consensus 175 v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~ 254 (409)
+.++.....
T Consensus 82 ~~~~~~~~~----------------------------------------------------------------------- 90 (175)
T 3nmr_A 82 MKPADSEKN----------------------------------------------------------------------- 90 (175)
T ss_dssp EEECGGGCC-----------------------------------------------------------------------
T ss_pred Ecccccccc-----------------------------------------------------------------------
Confidence 554432110
Q ss_pred CCcceecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHH
Q 015292 255 NAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (409)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~ 334 (409)
.....++|||+|||+.+|+++|+++|++||.|..|+|+++.. +.++|||||+|.+.++|.+|+
T Consensus 91 ----------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~afV~f~~~~~A~~A~ 153 (175)
T 3nmr_A 91 ----------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAI 153 (175)
T ss_dssp ----------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSHHHHHHHH
T ss_pred ----------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEEEEECCHHHHHHHH
Confidence 011237899999999999999999999999999999999876 455899999999999999999
Q ss_pred HHhCCceec---CeEEEEEecC
Q 015292 335 KNTEKYELD---GQALECSLAK 353 (409)
Q Consensus 335 ~~l~~~~~~---g~~l~v~~a~ 353 (409)
..|||..+. |++|+|.||.
T Consensus 154 ~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 154 KAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHTTSCCCTTCSSCCEEEECC
T ss_pred HHhcCCcccCCCCCCeEEEecC
Confidence 999998776 4999999984
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=3.8e-32 Score=231.58 Aligned_cols=183 Identities=21% Similarity=0.361 Sum_probs=148.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc----C-------CeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCcc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSI----G-------EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~ 168 (409)
..++|||+|||+++|+++|+++|++| | .|..+++ ++++|||||+|.+.++|.+|+ .|++..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 6777766 446899999999999999999 8999999
Q ss_pred CCceEEEeecccccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 015292 169 KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248 (409)
Q Consensus 169 ~g~~l~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 248 (409)
.|+.|.|.++.......-. ....
T Consensus 76 ~g~~i~v~~~~~~~~~~~~---------------------------------~~~~------------------------ 98 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGM---------------------------------SENP------------------------ 98 (198)
T ss_dssp TTEEEEEECCCCCCCCCCS---------------------------------SSCS------------------------
T ss_pred cCceEEEeCCCCCCCCCCC---------------------------------cCCC------------------------
Confidence 9999999887643210000 0000
Q ss_pred CccCCCCCcceecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHH
Q 015292 249 NFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328 (409)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e 328 (409)
. ...+...........++|||+|||+.+++++|+++|++||.|..|+|++++.++.++|||||+|.+.+
T Consensus 99 ~-----------~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~ 167 (198)
T 2yh0_A 99 S-----------VYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDIN 167 (198)
T ss_dssp S-----------CCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSS
T ss_pred c-----------CCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHH
Confidence 0 00000011112234589999999999999999999999999999999999877778999999999999
Q ss_pred HHHHHHHHhCCceecCeEEEEEecCCCCc
Q 015292 329 SAMKALKNTEKYELDGQALECSLAKPQAD 357 (409)
Q Consensus 329 ~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 357 (409)
+|.+|+..|||..|+|+.|+|.+++++..
T Consensus 168 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 168 VTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp HHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred HHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999988654
No 12
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=7.1e-33 Score=231.22 Aligned_cols=167 Identities=20% Similarity=0.342 Sum_probs=142.5
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 015292 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (409)
Q Consensus 96 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 175 (409)
..+...++|||+|||+++|+++|+++|..||.|.. .++.+..+|.++|||||+|.+.++|.+|+ .|++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEE
Confidence 34567899999999999999999999999998766 33444456889999999999999999999 59999999999999
Q ss_pred eecccccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCC
Q 015292 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN 255 (409)
Q Consensus 176 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~ 255 (409)
.++.+...
T Consensus 86 ~~~~~~~~------------------------------------------------------------------------ 93 (175)
T 1fje_B 86 EKPKGRDS------------------------------------------------------------------------ 93 (175)
T ss_dssp ECCCCSSC------------------------------------------------------------------------
T ss_pred ecCCCccc------------------------------------------------------------------------
Confidence 87753210
Q ss_pred CcceecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 015292 256 APTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (409)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~ 335 (409)
......++|||+|||+.+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+.
T Consensus 94 --------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 1fje_B 94 --------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLE 154 (175)
T ss_dssp --------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHH
T ss_pred --------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHH
Confidence 001123799999999999999999999999988766 3444568999999999999999999
Q ss_pred HhCCceecCeEEEEEecCCC
Q 015292 336 NTEKYELDGQALECSLAKPQ 355 (409)
Q Consensus 336 ~l~~~~~~g~~l~v~~a~~~ 355 (409)
.|||..|+|+.|+|.|+.++
T Consensus 155 ~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 155 EKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHTEEEETTEEEEEEECSSC
T ss_pred HhCCCEECCeEEEEEecCCC
Confidence 99999999999999999875
No 13
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=1.8e-31 Score=226.76 Aligned_cols=195 Identities=19% Similarity=0.292 Sum_probs=143.3
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 100 HGSEVYIGGIP-HDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 100 ~~~~l~v~nLp-~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
.+++|||+||| +.+|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46899999999 89999999999999999999999875 3799999999999999999999999999999999988
Q ss_pred ccccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcc
Q 015292 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (409)
Q Consensus 179 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (409)
..... .|.... +. ..+. ..+-.|... ....+. .
T Consensus 78 ~~~~~-----~p~~~~-----------~~------------~~~~---~~~~~~~~~----------~~~r~~------~ 110 (205)
T 3tyt_A 78 KQPAI-----MPGQSY-----------GL------------EDGS---CSYKDFSES----------RNNRFS------T 110 (205)
T ss_dssp SCSCC-----CCCSCC-----------BC------------TTSC---BSEEECTTC----------TTCSCS------S
T ss_pred cCCcc-----CCCccc-----------cc------------ccCC---ccccccCCC----------cccccc------C
Confidence 64321 111000 00 0000 000000000 000000 0
Q ss_pred eecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCce--eEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 015292 259 VSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI--TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (409)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v--~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~ 336 (409)
.... .......++++|||+|||+.+|+++|+++|++||.| ..++|+.+. +. ++|||||+|.+.++|.+||..
T Consensus 111 ~~~~----~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~-~~g~gfV~f~~~~~A~~Ai~~ 184 (205)
T 3tyt_A 111 PEQA----AKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SE-RSSSGLLEWDSKSDALETLGF 184 (205)
T ss_dssp HHHH----TTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SS-SSEEEEEECSSHHHHHHHHHH
T ss_pred cccc----cccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CC-CceEEEEEeCCHHHHHHHHHH
Confidence 0000 000012345799999999999999999999999999 899999876 33 359999999999999999999
Q ss_pred hCCceecCe----EEEEEec
Q 015292 337 TEKYELDGQ----ALECSLA 352 (409)
Q Consensus 337 l~~~~~~g~----~l~v~~a 352 (409)
|||..|.|+ ++.|.|+
T Consensus 185 lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 185 LNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HTTCEECCSSSSSCEECEEE
T ss_pred hCCCCccCCCCCcceEEEec
Confidence 999999876 6777665
No 14
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=3.9e-32 Score=226.05 Aligned_cols=159 Identities=21% Similarity=0.412 Sum_probs=142.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc----C-------CeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCcc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSI----G-------EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~ 168 (409)
+.++|||+|||+++|+++|+++|++| | .|.++++.+ ++|||||+|.+.++|.+|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 7 788887754 4899999999999999999 8999999
Q ss_pred CCceEEEeecccccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 015292 169 KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248 (409)
Q Consensus 169 ~g~~l~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 248 (409)
.|+.|.|.++.....
T Consensus 76 ~g~~i~v~~~~~~~~----------------------------------------------------------------- 90 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP----------------------------------------------------------------- 90 (172)
T ss_dssp TTEECEEECCSSCCC-----------------------------------------------------------------
T ss_pred cCceeeecCCcccCC-----------------------------------------------------------------
Confidence 999999976542110
Q ss_pred CccCCCCCcceecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHH
Q 015292 249 NFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328 (409)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e 328 (409)
....++|||+|||+.+++++|+++|++||.|..+.|++++.++.++|||||+|.+.+
T Consensus 91 -----------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~ 147 (172)
T 2g4b_A 91 -----------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDIN 147 (172)
T ss_dssp -----------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTT
T ss_pred -----------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHH
Confidence 000268999999999999999999999999999999999877778999999999999
Q ss_pred HHHHHHHHhCCceecCeEEEEEecC
Q 015292 329 SAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 329 ~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
+|.+|+..|||..|+|++|.|.||.
T Consensus 148 ~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 148 VTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999999999999984
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=5e-31 Score=237.27 Aligned_cols=246 Identities=16% Similarity=0.243 Sum_probs=152.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceE
Q 015292 98 PPHGSEVYIGGIPHDASEHDLR----DFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l 173 (409)
....++|||+|||+++|+++|+ ++|++||.|.+|+|++ +|+++|||||+|.+.++|.+|++.|++..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3457999999999999999977 8999999999999987 48899999999999999999999999999999999
Q ss_pred EEeecccccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEE----eCCHHH-HHHHHHHhcCC
Q 015292 174 RCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIE----YHNHKC-AEYSRQKMTNP 248 (409)
Q Consensus 174 ~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~----f~~~~~-a~~a~~~~~~~ 248 (409)
+|.++............... +......-..... ...................+-+. -..... +......+.+.
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFV-ERDRKREKRKPKS-QETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEeccCcchhhhhcCCcc-cchhhhhhhhccc-cchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 99998755432211111100 0000000000000 00000000000000000000000 000000 00000000000
Q ss_pred -Ccc-----CCCCCc-ceecC-------------CCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeC
Q 015292 249 -NFK-----LGTNAP-TVSWA-------------DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVP 308 (409)
Q Consensus 249 -~~~-----~~~~~~-~~~~~-------------~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 308 (409)
.+. ...... ...+. .+.........+.++|||+|||..+++++|+++|++||.|..|+|+
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 000 000000 00000 0000011223456899999999999999999999999999999999
Q ss_pred CCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceec-CeEEEEEecC
Q 015292 309 PAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD-GQALECSLAK 353 (409)
Q Consensus 309 ~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~-g~~l~v~~a~ 353 (409)
.++ +|||||+|.+.++|.+|+..|||..|. |+.|+|.|++
T Consensus 241 ~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 241 PGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 765 699999999999999999999999999 9999999986
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.98 E-value=5.2e-31 Score=229.19 Aligned_cols=194 Identities=20% Similarity=0.306 Sum_probs=148.7
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe
Q 015292 98 PPHGSEVYIGGIPH-DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (409)
Q Consensus 98 ~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 176 (409)
.+.+++|||+|||+ ++++++|+++|++||.|.+|+|++++ +|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45679999999999 99999999999999999999999874 7899999999999999999999999999999999
Q ss_pred ecccccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCC
Q 015292 177 TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA 256 (409)
Q Consensus 177 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 256 (409)
++....... +..... .... .-.|.. ....
T Consensus 106 ~a~~~~~~~----~~~~~~------------------------~~~~-----~~~~~~-------------~~~~----- 134 (229)
T 2adc_A 106 LSKHQNVQL----PREGQE------------------------DQGL-----TKDYGN-------------SPLH----- 134 (229)
T ss_dssp CCSCCCCCC----CCSSSS------------------------TTTT-----EEECTT-------------CSSC-----
T ss_pred EecCccccC----cccccc------------------------cccc-----cccccc-------------Cccc-----
Confidence 887532210 000000 0000 000000 0000
Q ss_pred cceecCCCCC-CCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcC-ceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHH
Q 015292 257 PTVSWADPRN-VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (409)
Q Consensus 257 ~~~~~~~~~~-~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~ 334 (409)
....+.. .......++++|||+|||..+++++|+++|++|| .|..|+|+.+. +|||||+|.+.++|.+|+
T Consensus 135 ---~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-----~g~afV~f~~~~~A~~Ai 206 (229)
T 2adc_A 135 ---RFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQAL 206 (229)
T ss_dssp ---CCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS-----TTCEEEEESSHHHHHHHH
T ss_pred ---ccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC-----CcEEEEEECCHHHHHHHH
Confidence 0000000 0001123458999999999999999999999999 99999997643 699999999999999999
Q ss_pred HHhCCceec-CeEEEEEecCCC
Q 015292 335 KNTEKYELD-GQALECSLAKPQ 355 (409)
Q Consensus 335 ~~l~~~~~~-g~~l~v~~a~~~ 355 (409)
..|||..|. |+.|+|.|++++
T Consensus 207 ~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 207 IDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHCCCccCCCCeEEEEEecCC
Confidence 999999999 999999999874
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=5.4e-31 Score=224.29 Aligned_cols=192 Identities=20% Similarity=0.319 Sum_probs=147.9
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 100 HGSEVYIGGIPH-DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 100 ~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
.+++|||+|||+ ++++++|+++|++||.|..|++++++ +|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 368999999999 99999999999999999999998874 789999999999999999999999999999999988
Q ss_pred ccccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcc
Q 015292 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (409)
Q Consensus 179 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (409)
...... ++..... ..+..+. |... .. .+
T Consensus 77 ~~~~~~----~~~~~~~------------------------~~~~~~~-----~~~~-------------~~---~r--- 104 (198)
T 1qm9_A 77 KHQNVQ----LPREGQE------------------------DQGLTKD-----YGNS-------------PL---HR--- 104 (198)
T ss_dssp CCCSCC----CSSSSSS------------------------SSSCEEE-----SSCC-------------CT---TS---
T ss_pred cCCCcC----CCCcCCc------------------------ccccccc-----ccCC-------------ch---hh---
Confidence 754311 0100000 0000000 0000 00 00
Q ss_pred eecCCCC-CCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcC-ceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 015292 259 VSWADPR-NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (409)
Q Consensus 259 ~~~~~~~-~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~ 336 (409)
+..+. ........++++|||+|||..+++++|+++|++|| .|..|+|+++. +|+|||+|.+.++|.+|+..
T Consensus 105 --~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~ 177 (198)
T 1qm9_A 105 --FKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALID 177 (198)
T ss_dssp --SSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHH
T ss_pred --ccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHH
Confidence 00000 00011223468999999999999999999999999 99999997754 69999999999999999999
Q ss_pred hCCceec-CeEEEEEecCCC
Q 015292 337 TEKYELD-GQALECSLAKPQ 355 (409)
Q Consensus 337 l~~~~~~-g~~l~v~~a~~~ 355 (409)
|||..|+ |++|+|.|++++
T Consensus 178 l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 178 LHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HTSSCCSSCCSCCEEEECCC
T ss_pred hcCCccCCCCeEEEEeeccc
Confidence 9999999 999999999874
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=2.2e-30 Score=229.73 Aligned_cols=161 Identities=27% Similarity=0.404 Sum_probs=143.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
....++|||+|||+++|+++|+++|++||.|..|+|.+ ++|||||+|.+.++|.+|+..+++..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 34568999999999999999999999999999999965 379999999999999999999999999999999976
Q ss_pred cccccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCc
Q 015292 178 SQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257 (409)
Q Consensus 178 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 257 (409)
+.+
T Consensus 93 a~~----------------------------------------------------------------------------- 95 (261)
T 3sde_A 93 ATH----------------------------------------------------------------------------- 95 (261)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 531
Q ss_pred ceecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHh
Q 015292 258 TVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (409)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l 337 (409)
.++|||+|||+.+|+++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|
T Consensus 96 -----------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 96 -----------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp -----------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred -----------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 1579999999999999999999999999999999995 5556899999999999999999999
Q ss_pred C-Cceec---CeEEEEEecCCCCccC
Q 015292 338 E-KYELD---GQALECSLAKPQADQK 359 (409)
Q Consensus 338 ~-~~~~~---g~~l~v~~a~~~~~~~ 359 (409)
| +..+. +++|.|.++.+.....
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~~~~~~~ 183 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPMEQFDDED 183 (261)
T ss_dssp HHSCEESSSSCCBCEEEECCCEESSS
T ss_pred cCCeEEecCCCceEEEeeccccCccC
Confidence 5 44444 9999999998765443
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=8.4e-27 Score=209.86 Aligned_cols=164 Identities=18% Similarity=0.355 Sum_probs=151.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
.+..++|||+|||+++|+++|+++|++||.|..++++.+..+|.++|||||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccc---------cccccCCCCCCC-ChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 015292 178 SQAK---------YRLFIGNIPRNW-GSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN 247 (409)
Q Consensus 178 ~~~~---------~~l~v~~l~~~~-~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 247 (409)
+.+. .+|||+|||+.+ ++++|+.+|+.||. |..+.++.+ .++.++|+|||.|.+.++|..|+..|++
T Consensus 172 a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~-i~~v~i~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~g 248 (284)
T 3smz_A 172 TDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHS-PTFCQLACG--QDGQLKGFAVLEYETAEMAEEAQQQADG 248 (284)
T ss_dssp CCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSC-CSEEEEEEC--SSCCEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCC-eEEEEEEEC--CCCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 8654 479999999995 99999999999999 999999988 4788999999999999999999999998
Q ss_pred CCccCCCCCcceecCCCCC
Q 015292 248 PNFKLGTNAPTVSWADPRN 266 (409)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~ 266 (409)
..+ .++.+.+.|+.++.
T Consensus 249 ~~~--~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 249 LSL--GGSHLRVSFCAPGP 265 (284)
T ss_dssp CEE--TTEECEEEECCSSS
T ss_pred Ccc--CCeEEEEEEecCCC
Confidence 754 78899999987765
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=3.2e-26 Score=206.89 Aligned_cols=162 Identities=21% Similarity=0.346 Sum_probs=140.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccC-CeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
...++|||+|||+++++++|+++|+.|| .|..|+++.+.. |.++|||||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3578999999999999999999999999 999999998876 88999999999999999999999999999999999998
Q ss_pred ccc-------------ccccccCCCCCC-CChHHHHHHHHhhCCceeEEEEeecCCCCCCCccEEEEEeCCHHHHHHHHH
Q 015292 178 SQA-------------KYRLFIGNIPRN-WGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243 (409)
Q Consensus 178 ~~~-------------~~~l~v~~l~~~-~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 243 (409)
+.+ ..+|||+|||+. +++++|+.+|+.||. |..+.++.+...++.++|||||.|.+.+.|..|+
T Consensus 194 a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~-v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 194 SNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGS-IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp CCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC-EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred CCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCC-eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 753 257999999999 999999999999999 9999999873325899999999999999999999
Q ss_pred HhcCCCccCCCCCcceecCCCC
Q 015292 244 KMTNPNFKLGTNAPTVSWADPR 265 (409)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~ 265 (409)
.|++. .+.++.+.+.|+.++
T Consensus 272 ~l~g~--~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 QMNRS--LLGNREISVSLADKK 291 (292)
T ss_dssp GGTTE--EETTEEEEEEECCCC
T ss_pred HhcCC--EECCcEEEEEEecCC
Confidence 99986 467899999998765
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.92 E-value=1e-23 Score=172.20 Aligned_cols=85 Identities=26% Similarity=0.463 Sum_probs=79.8
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
..++|||+|||+.+++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.+++
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 34799999999999999999999999999999999998888889999999999999999999999999999999999999
Q ss_pred CCCcc
Q 015292 354 PQADQ 358 (409)
Q Consensus 354 ~~~~~ 358 (409)
+....
T Consensus 149 ~~~~~ 153 (158)
T 2kn4_A 149 YGRPP 153 (158)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 86543
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=9.4e-23 Score=156.54 Aligned_cols=98 Identities=19% Similarity=0.398 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
|...++|||+|||+++|+++|+++|++||.|.+|+|+++. +.++|||||+|.+.++|.+|++.|++..|.|+.|.|.+
T Consensus 2 P~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~ 79 (115)
T 4f25_A 2 PLGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 79 (115)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4457899999999999999999999999999999999985 45899999999999999999999999999999999998
Q ss_pred cccc--------------cccccCCCCCCCChHH
Q 015292 178 SQAK--------------YRLFIGNIPRNWGSED 197 (409)
Q Consensus 178 ~~~~--------------~~l~v~~l~~~~~~~~ 197 (409)
+.++ .+|||+|||+.+|++.
T Consensus 80 a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 80 FKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SSCCCC----------------------------
T ss_pred CCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 7543 4699999999998763
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=1.9e-22 Score=150.02 Aligned_cols=81 Identities=26% Similarity=0.444 Sum_probs=77.7
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCC
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (409)
+++|||+|||+++|+++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.||+|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 47899999999999999999999999999999999998888899999999999999999999999999999999999986
Q ss_pred C
Q 015292 355 Q 355 (409)
Q Consensus 355 ~ 355 (409)
.
T Consensus 99 S 99 (99)
T 4fxv_A 99 S 99 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 24
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.87 E-value=1.3e-21 Score=158.10 Aligned_cols=139 Identities=19% Similarity=0.267 Sum_probs=112.2
Q ss_pred CCceeeEEEEecCHHHHHHHHHHh-CCCccCCceEEEeecccccccccCCCCCCCChHHHHHHHHhhCCceeEEEEeecC
Q 015292 140 SENKGFAFVTFRNVELASKAIDKL-NNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218 (409)
Q Consensus 140 g~~~g~afV~F~~~~~A~~a~~~l-~~~~~~g~~l~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~ 218 (409)
...+|+++|+|.+.++|.+|++.+ ++..+.| .|.+.++......... .
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~-----------------------------~- 58 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEG-----------------------------S- 58 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECS-----------------------------S-
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccc-----------------------------c-
Confidence 467999999999999999999999 9999999 9999876532210000 0
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHhcCCCccCCCCCcceecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhh
Q 015292 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEH 298 (409)
Q Consensus 219 ~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~ 298 (409)
.. .............++|||+|||+.+++++|+++|++
T Consensus 59 -~~-----------------------------------------~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~ 96 (150)
T 2i2y_A 59 -HH-----------------------------------------HHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGY 96 (150)
T ss_dssp -SS-----------------------------------------CCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHH
T ss_pred -cc-----------------------------------------ccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 00 000001112234489999999999999999999999
Q ss_pred cCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCCC
Q 015292 299 HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (409)
Q Consensus 299 ~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 356 (409)
||.|..|+|+++ ++|||||+|.+.++|.+|+..|||..|.|++|+|.|++++.
T Consensus 97 ~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 97 YGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred hCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999987 37999999999999999999999999999999999998753
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=9.2e-22 Score=146.30 Aligned_cols=83 Identities=25% Similarity=0.515 Sum_probs=79.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
-..+++|||+|||+++|+++|+++|++||+|.+|+|++++.+|.++|||||+|.+.++|.+|++.||+..|.|++|+|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 015292 178 SQA 180 (409)
Q Consensus 178 ~~~ 180 (409)
+.|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 875
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=1e-21 Score=143.82 Aligned_cols=82 Identities=20% Similarity=0.406 Sum_probs=76.5
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcC-ceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhC-CceecCeEEEEEecC
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE-KYELDGQALECSLAK 353 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~-~~~~~g~~l~v~~a~ 353 (409)
++|||+|||+++|+++|+++|++|| .|.+|+|++++.++.+||||||+|.+.++|.+|+..|+ +..|+|++|+|.||.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 79999999999988889999999999999999999874 567999999999998
Q ss_pred CCCc
Q 015292 354 PQAD 357 (409)
Q Consensus 354 ~~~~ 357 (409)
++..
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8654
No 27
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.85 E-value=5.8e-21 Score=155.27 Aligned_cols=86 Identities=22% Similarity=0.331 Sum_probs=80.6
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45589999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred CCCCcc
Q 015292 353 KPQADQ 358 (409)
Q Consensus 353 ~~~~~~ 358 (409)
++....
T Consensus 117 ~~~~~~ 122 (156)
T 1h2v_Z 117 AGFKEG 122 (156)
T ss_dssp SCCCTT
T ss_pred CCCCCc
Confidence 876543
No 28
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=3.9e-21 Score=141.07 Aligned_cols=79 Identities=15% Similarity=0.320 Sum_probs=74.7
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCc--eeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCc----eecCeEEEE
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGR--ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY----ELDGQALEC 349 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~--v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~----~~~g~~l~v 349 (409)
.+|||+|||+.+|+++|+++|++||. |.+|+|++++.++.+||||||+|.+.++|.+|+..|||. .|+||+|.|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 78999999999999999999999995 679999999999999999999999999999999999986 589999999
Q ss_pred EecCC
Q 015292 350 SLAKP 354 (409)
Q Consensus 350 ~~a~~ 354 (409)
+||+.
T Consensus 90 ~~Aks 94 (95)
T 2lkz_A 90 DFAKS 94 (95)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99985
No 29
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=143.11 Aligned_cols=84 Identities=19% Similarity=0.228 Sum_probs=79.6
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
+.++|||+|||+.+++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45899999999999999999999999999999999999988889999999999999999999999999999999999998
Q ss_pred CCCc
Q 015292 354 PQAD 357 (409)
Q Consensus 354 ~~~~ 357 (409)
....
T Consensus 85 ~~~~ 88 (110)
T 3s8s_A 85 KGQQ 88 (110)
T ss_dssp TTHH
T ss_pred CCcH
Confidence 6654
No 30
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=4.9e-20 Score=137.63 Aligned_cols=86 Identities=21% Similarity=0.341 Sum_probs=80.8
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
.+.++|||+|||+.+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 44589999999999999999999999999999999999978888999999999999999999999999999999999999
Q ss_pred CCCCcc
Q 015292 353 KPQADQ 358 (409)
Q Consensus 353 ~~~~~~ 358 (409)
+++...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987654
No 31
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=141.55 Aligned_cols=84 Identities=25% Similarity=0.332 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+++.++|||+|||+++++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8643
No 32
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.9e-20 Score=137.80 Aligned_cols=84 Identities=26% Similarity=0.495 Sum_probs=79.6
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
+.++|||+|||..+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 45899999999999999999999999999999999998888889999999999999999999999999999999999998
Q ss_pred CCCc
Q 015292 354 PQAD 357 (409)
Q Consensus 354 ~~~~ 357 (409)
++..
T Consensus 84 ~~~~ 87 (95)
T 2dnz_A 84 ERLD 87 (95)
T ss_dssp CCCC
T ss_pred cccC
Confidence 8654
No 33
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.8e-20 Score=138.18 Aligned_cols=86 Identities=15% Similarity=0.223 Sum_probs=80.3
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEE-eeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
+.++|||+|||+.+++++|+++|++||.|..+ +|++++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45899999999999999999999999999999 99999888888999999999999999999999999999999999999
Q ss_pred CCCCccC
Q 015292 353 KPQADQK 359 (409)
Q Consensus 353 ~~~~~~~ 359 (409)
.++....
T Consensus 84 ~~~~~~~ 90 (96)
T 1x5t_A 84 FKKDSKG 90 (96)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 8876543
No 34
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=6e-20 Score=137.12 Aligned_cols=86 Identities=23% Similarity=0.455 Sum_probs=80.2
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
.+.++|||+|||..+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|+. ||+..|.|+.|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 455899999999999999999999999999999999998888889999999999999999999 9999999999999999
Q ss_pred CCCCccC
Q 015292 353 KPQADQK 359 (409)
Q Consensus 353 ~~~~~~~ 359 (409)
.++....
T Consensus 87 ~~~~~~~ 93 (99)
T 2dgs_A 87 EPRDSKS 93 (99)
T ss_dssp CCCCCCC
T ss_pred CCCcccC
Confidence 9876543
No 35
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.83 E-value=1.4e-19 Score=139.14 Aligned_cols=88 Identities=23% Similarity=0.330 Sum_probs=81.7
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
....++|||+|||+.+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999987888899999999999999999999999999999999999
Q ss_pred cCCCCccC
Q 015292 352 AKPQADQK 359 (409)
Q Consensus 352 a~~~~~~~ 359 (409)
++++....
T Consensus 92 a~~~~~~~ 99 (115)
T 2dgo_A 92 ATRKPPAP 99 (115)
T ss_dssp SSCCCCCS
T ss_pred ccCCCCCC
Confidence 99876543
No 36
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.5e-20 Score=138.18 Aligned_cols=87 Identities=26% Similarity=0.420 Sum_probs=81.1
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
.+.++|||+|||+.+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 44589999999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred CCCCccC
Q 015292 353 KPQADQK 359 (409)
Q Consensus 353 ~~~~~~~ 359 (409)
+++....
T Consensus 90 ~~~~~~~ 96 (102)
T 2cqb_A 90 KPMRIKE 96 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 37
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7e-20 Score=138.40 Aligned_cols=88 Identities=24% Similarity=0.351 Sum_probs=81.7
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34568999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred cCCCCccC
Q 015292 352 AKPQADQK 359 (409)
Q Consensus 352 a~~~~~~~ 359 (409)
+.+.....
T Consensus 92 a~~~~~~~ 99 (105)
T 1x5u_A 92 ASAHNKNL 99 (105)
T ss_dssp TTTTSCCC
T ss_pred CCCCCcCC
Confidence 99876543
No 38
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.83 E-value=1.5e-20 Score=148.31 Aligned_cols=125 Identities=21% Similarity=0.310 Sum_probs=83.3
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCCccCCCCCcceecCCCCCCCCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEe
Q 015292 227 FAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVV 306 (409)
Q Consensus 227 ~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~ 306 (409)
+.|+.|.+...+..|+..+++......+ ...+..+ .......++|||+|||+.+++++|+++|++||.|..|.
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~---~~~~~~~----~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~ 78 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG---SMSYGRP----PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVY 78 (135)
T ss_dssp --------------------------------CCSCCS----CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEE
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC---CCCcCCC----CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE
Confidence 5677777777788888888765332221 1122222 23344568999999999999999999999999999999
Q ss_pred eCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCCCcc
Q 015292 307 VPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQ 358 (409)
Q Consensus 307 i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 358 (409)
|+.++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.|+++....
T Consensus 79 i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 79 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp CCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 9999888888999999999999999999999999999999999999986543
No 39
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=4.8e-21 Score=140.18 Aligned_cols=83 Identities=31% Similarity=0.515 Sum_probs=76.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccC-CeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhC-CCccCCceEEEeec
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN-NTEFKGKKIRCSTS 178 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~-~~~~~g~~l~v~~~ 178 (409)
+++|||+|||+++|+++|+++|++|| .|.+|+|++++.+|.++|||||+|.+.++|.+|++.++ +..+.|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 89999999999999999999999999999999998774 56799999999999
Q ss_pred ccccc
Q 015292 179 QAKYR 183 (409)
Q Consensus 179 ~~~~~ 183 (409)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 86543
No 40
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.9e-20 Score=138.70 Aligned_cols=88 Identities=23% Similarity=0.434 Sum_probs=81.7
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
..+.++|||+|||+.+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34568999999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred cCCCCccC
Q 015292 352 AKPQADQK 359 (409)
Q Consensus 352 a~~~~~~~ 359 (409)
++++....
T Consensus 92 a~~~~~~~ 99 (103)
T 2cq0_A 92 AKPSTNSG 99 (103)
T ss_dssp SSCCCCSC
T ss_pred CCCCCCCC
Confidence 99876543
No 41
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.8e-20 Score=138.50 Aligned_cols=87 Identities=24% Similarity=0.419 Sum_probs=81.2
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
.+.++|||+|||+++++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 44589999999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred CCCCccC
Q 015292 353 KPQADQK 359 (409)
Q Consensus 353 ~~~~~~~ 359 (409)
++....+
T Consensus 90 ~~~~~~~ 96 (102)
T 1x5s_A 90 GKSSDNR 96 (102)
T ss_dssp ECCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 42
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5.4e-20 Score=138.45 Aligned_cols=87 Identities=26% Similarity=0.435 Sum_probs=81.0
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34458999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred cCCCCcc
Q 015292 352 AKPQADQ 358 (409)
Q Consensus 352 a~~~~~~ 358 (409)
+++....
T Consensus 90 a~~~~~~ 96 (103)
T 2dnm_A 90 ARYGRRD 96 (103)
T ss_dssp CSSCCSC
T ss_pred CCcCCCC
Confidence 9976543
No 43
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.82 E-value=7.8e-20 Score=140.49 Aligned_cols=88 Identities=19% Similarity=0.369 Sum_probs=81.7
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
....++|||+|||+++++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred cCCCCccC
Q 015292 352 AKPQADQK 359 (409)
Q Consensus 352 a~~~~~~~ 359 (409)
++++....
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpz_A 102 KRSKNDSK 109 (115)
T ss_dssp CCCSCCCC
T ss_pred cCCCCcCC
Confidence 99876543
No 44
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=5.3e-20 Score=132.69 Aligned_cols=81 Identities=21% Similarity=0.295 Sum_probs=77.6
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCC
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (409)
.+|||+|||+.+++++|+++|++||.|..+.|+++..++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999888888999999999999999999999999999999999999876
Q ss_pred C
Q 015292 356 A 356 (409)
Q Consensus 356 ~ 356 (409)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 45
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.82 E-value=2e-20 Score=176.25 Aligned_cols=86 Identities=16% Similarity=0.341 Sum_probs=80.4
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
..+.++|||+|||+.+|+++|+.+|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34558999999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred cCCCCc
Q 015292 352 AKPQAD 357 (409)
Q Consensus 352 a~~~~~ 357 (409)
+.+...
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 997654
No 46
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.82 E-value=8.5e-20 Score=135.42 Aligned_cols=84 Identities=19% Similarity=0.379 Sum_probs=79.5
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCC
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (409)
+++|||+|||..+++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|||..|+|+.|+|.++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 47999999999999999999999999999999999988888899999999999999999999999999999999999998
Q ss_pred CCcc
Q 015292 355 QADQ 358 (409)
Q Consensus 355 ~~~~ 358 (409)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 7643
No 47
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=137.20 Aligned_cols=87 Identities=23% Similarity=0.407 Sum_probs=80.6
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCC-CCCCCCCcEEEEEeCCHHHHHHHHHHh-CCceecCeEEEE
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPA-KPGQEKNRIGFVHFAERSSAMKALKNT-EKYELDGQALEC 349 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~~~g~afV~F~~~e~A~~A~~~l-~~~~~~g~~l~v 349 (409)
....++|||+|||+.+++++|+++|++||.|..|+|+++ +.++.++|||||+|.+.++|.+|+..| |+..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 345689999999999999999999999999999999999 677777999999999999999999999 999999999999
Q ss_pred EecCCCCcc
Q 015292 350 SLAKPQADQ 358 (409)
Q Consensus 350 ~~a~~~~~~ 358 (409)
.|+++....
T Consensus 92 ~~a~~~~~~ 100 (107)
T 2cph_A 92 EWADSEVTV 100 (107)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999987554
No 48
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=5.3e-20 Score=134.00 Aligned_cols=82 Identities=22% Similarity=0.314 Sum_probs=76.3
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
+.++|||+|||..+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 34899999999999999999999999999999999998788889999999999999999999999999999999999998
Q ss_pred CC
Q 015292 354 PQ 355 (409)
Q Consensus 354 ~~ 355 (409)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 74
No 49
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=5.5e-20 Score=133.25 Aligned_cols=81 Identities=27% Similarity=0.431 Sum_probs=76.7
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
.+.++|||+|||+.+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.||
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34589999999999999999999999999999999999888888999999999999999999999999999999999998
Q ss_pred C
Q 015292 353 K 353 (409)
Q Consensus 353 ~ 353 (409)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 50
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.9e-19 Score=137.48 Aligned_cols=88 Identities=22% Similarity=0.388 Sum_probs=81.5
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhC------CceecCe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE------KYELDGQ 345 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~------~~~~~g~ 345 (409)
..+.++|||+|||+.+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..|| +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3456899999999999999999999999999999999999888889999999999999999999999 9999999
Q ss_pred EEEEEecCCCCccC
Q 015292 346 ALECSLAKPQADQK 359 (409)
Q Consensus 346 ~l~v~~a~~~~~~~ 359 (409)
.|+|.++.++....
T Consensus 92 ~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 92 QLKVDLAVTRDEAA 105 (111)
T ss_dssp EEEEECCCCCCCCC
T ss_pred EEEEEECCCCccCC
Confidence 99999999875543
No 51
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-20 Score=138.18 Aligned_cols=81 Identities=22% Similarity=0.390 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCC--eeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCC----ccCCceE
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGE--VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT----EFKGKKI 173 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~--v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~----~~~g~~l 173 (409)
.-.||||+|||+++|+++|+++|++||. |.+|+|++++.+|+++|||||+|.+.++|.+|++.||+. .+.||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4578999999999999999999999995 679999999999999999999999999999999999997 4899999
Q ss_pred EEeeccc
Q 015292 174 RCSTSQA 180 (409)
Q Consensus 174 ~v~~~~~ 180 (409)
.|.++.+
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999864
No 52
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-19 Score=143.49 Aligned_cols=88 Identities=25% Similarity=0.419 Sum_probs=81.6
Q ss_pred CCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015292 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (409)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~ 350 (409)
.....++|||+|||.++++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34556899999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred ecCCCCcc
Q 015292 351 LAKPQADQ 358 (409)
Q Consensus 351 ~a~~~~~~ 358 (409)
++++...+
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99986543
No 53
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.8e-19 Score=136.85 Aligned_cols=85 Identities=29% Similarity=0.464 Sum_probs=79.1
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
....++|||+|||+.+++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..|++ .|.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 34558999999999999999999999999999999999998888899999999999999999999998 89999999999
Q ss_pred cCCCCc
Q 015292 352 AKPQAD 357 (409)
Q Consensus 352 a~~~~~ 357 (409)
+.+...
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 987644
No 54
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-19 Score=133.07 Aligned_cols=82 Identities=20% Similarity=0.355 Sum_probs=76.5
Q ss_pred ccceEEEEcCCCCCCCHHHHH----HHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015292 273 SQVKAVYVKNLPRNVTQDQLK----KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~ 348 (409)
...++|||+|||+.+++++|+ ++|++||.|..|+|+.++.+ +|||||+|.+.++|.+|+..|||..|.|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 345899999999999999999 99999999999999998877 68999999999999999999999999999999
Q ss_pred EEecCCCCc
Q 015292 349 CSLAKPQAD 357 (409)
Q Consensus 349 v~~a~~~~~ 357 (409)
|.++++...
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999987654
No 55
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=133.53 Aligned_cols=82 Identities=27% Similarity=0.494 Sum_probs=77.5
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
..+.++|||+|||+.+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34458999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred cC
Q 015292 352 AK 353 (409)
Q Consensus 352 a~ 353 (409)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 56
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=4.4e-20 Score=141.60 Aligned_cols=82 Identities=22% Similarity=0.391 Sum_probs=75.2
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCC
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (409)
.++|||+|||+++++++|+++|++||.|.+|+|+++..+ +||||||+|.+.++|.+||..|||..|.|+.|+|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~--~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE--EEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCC--CCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 368999999999999999999999999999999988643 589999999999999999999999999999999999987
Q ss_pred CCcc
Q 015292 355 QADQ 358 (409)
Q Consensus 355 ~~~~ 358 (409)
+..+
T Consensus 83 ~~~~ 86 (115)
T 4f25_A 83 RKER 86 (115)
T ss_dssp CCC-
T ss_pred cccc
Confidence 6543
No 57
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.81 E-value=1.7e-19 Score=136.53 Aligned_cols=87 Identities=22% Similarity=0.387 Sum_probs=80.7
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCcee---cCeEEE
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL---DGQALE 348 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~---~g~~l~ 348 (409)
....++|||+|||..+++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..||+..+ .|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34558999999999999999999999999999999999998888899999999999999999999999988 899999
Q ss_pred EEecCCCCcc
Q 015292 349 CSLAKPQADQ 358 (409)
Q Consensus 349 v~~a~~~~~~ 358 (409)
|.++.+....
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999986553
No 58
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.81 E-value=6.9e-20 Score=140.86 Aligned_cols=105 Identities=18% Similarity=0.330 Sum_probs=96.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++|+++|+++|++||.|..|+|+.+ +.++|||||+|.+.++|.+|+..||+..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 556799999999999999999999999999999999976 55699999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCChHHHHHHHHhhCC
Q 015292 178 SQAKYRLFIGNIPRNWGSEDLQKVVSEVGP 207 (409)
Q Consensus 178 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 207 (409)
+.+.... .+++...++++|..+|+.+|-
T Consensus 82 a~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF--QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT--TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh--hhhhHhHhHHHHHHHHHHhCC
Confidence 9876543 778888899999999999985
No 59
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=134.31 Aligned_cols=84 Identities=21% Similarity=0.288 Sum_probs=79.1
Q ss_pred CCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015292 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (409)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~ 350 (409)
...+.++|||+|||+.+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556899999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred ecCC
Q 015292 351 LAKP 354 (409)
Q Consensus 351 ~a~~ 354 (409)
|+++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9975
No 60
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.8e-19 Score=133.75 Aligned_cols=85 Identities=26% Similarity=0.376 Sum_probs=78.0
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
...++|||+|||+.+++++|+++|++||.|..|+|+++..+ ++|||||+|.+.++|.+|+..||+..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 44589999999999999999999999999999999998655 4799999999999999999999999999999999999
Q ss_pred CCCCccC
Q 015292 353 KPQADQK 359 (409)
Q Consensus 353 ~~~~~~~ 359 (409)
++.....
T Consensus 91 ~~~~~~~ 97 (103)
T 2cqi_A 91 TTPSSQK 97 (103)
T ss_dssp CCTTCCC
T ss_pred CCCcccc
Confidence 9866543
No 61
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=6.6e-20 Score=150.30 Aligned_cols=130 Identities=9% Similarity=0.126 Sum_probs=80.5
Q ss_pred EEeCCHHHHHHHHHHhcCCCccCCCCCcceecCCC----------------CCCCCCCCccceEEEEcCCCCCCCHHHHH
Q 015292 230 IEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP----------------RNVDSSGASQVKAVYVKNLPRNVTQDQLK 293 (409)
Q Consensus 230 v~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 293 (409)
..|....++..++..+.+......++.....+... ...........++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 45666667777777776655544444443333111 01111233456899999999999999999
Q ss_pred HHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCCCccC
Q 015292 294 KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359 (409)
Q Consensus 294 ~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 359 (409)
.+|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+.++....
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 999999999999999998888889999999999999999999999999999999999998765543
No 62
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.81 E-value=2.2e-19 Score=137.73 Aligned_cols=84 Identities=24% Similarity=0.416 Sum_probs=78.0
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
..++|||+|||+++++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 34799999999999999999999999999999999998 66669999999999999999999999999999999999998
Q ss_pred CCCcc
Q 015292 354 PQADQ 358 (409)
Q Consensus 354 ~~~~~ 358 (409)
+....
T Consensus 85 ~~~~~ 89 (116)
T 2fy1_A 85 KPSFQ 89 (116)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 76543
No 63
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=135.04 Aligned_cols=85 Identities=12% Similarity=0.373 Sum_probs=78.5
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
....++|||+|||+.+++++|+++|++||.|..|+|+.++ ++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3445899999999999999999999999999999999998 566689999999999999999999999999999999999
Q ss_pred cCCCCc
Q 015292 352 AKPQAD 357 (409)
Q Consensus 352 a~~~~~ 357 (409)
++++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 988654
No 64
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=7e-20 Score=136.52 Aligned_cols=86 Identities=26% Similarity=0.399 Sum_probs=78.5
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCC---CCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP---GQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~ 350 (409)
+.++|||+|||+++++++|+++|++||.|..|.|++++. ++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 347999999999999999999999999999999998776 44668999999999999999999999999999999999
Q ss_pred ecCCCCccC
Q 015292 351 LAKPQADQK 359 (409)
Q Consensus 351 ~a~~~~~~~ 359 (409)
++++.....
T Consensus 84 ~a~~~~~~~ 92 (98)
T 2cpf_A 84 ISERATKPA 92 (98)
T ss_dssp CSSCSSCCC
T ss_pred EccCCCCCC
Confidence 998876543
No 65
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.8e-19 Score=133.21 Aligned_cols=86 Identities=23% Similarity=0.380 Sum_probs=78.6
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
....++|||+|||+.+++++|+++|++||.|..|+|+++..+ ++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999999998754 589999999999999999999999999999999999
Q ss_pred cCCCCccC
Q 015292 352 AKPQADQK 359 (409)
Q Consensus 352 a~~~~~~~ 359 (409)
+.++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cq3_A 90 ATARVMTN 97 (103)
T ss_dssp CCSSCCCC
T ss_pred cccCCCCC
Confidence 99875543
No 66
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.9e-19 Score=133.94 Aligned_cols=84 Identities=23% Similarity=0.436 Sum_probs=78.0
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCC-CCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~-~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
.+.++|||+|||+.+++++|+++|+.|| |..|.|++++.+ +.++|||||+|.+.++|.+|+ .||+..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4458999999999999999999999999 999999999886 777999999999999999999 8999999999999999
Q ss_pred cCCCCcc
Q 015292 352 AKPQADQ 358 (409)
Q Consensus 352 a~~~~~~ 358 (409)
+.++...
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9986553
No 67
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=2.3e-19 Score=136.77 Aligned_cols=86 Identities=13% Similarity=0.224 Sum_probs=80.6
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
....++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred cCCCCc
Q 015292 352 AKPQAD 357 (409)
Q Consensus 352 a~~~~~ 357 (409)
+.++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987654
No 68
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=136.36 Aligned_cols=86 Identities=29% Similarity=0.435 Sum_probs=78.9
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 345689999999999999999999999999999999988 555689999999999999999999999999999999999
Q ss_pred cCCCCccC
Q 015292 352 AKPQADQK 359 (409)
Q Consensus 352 a~~~~~~~ 359 (409)
++++..+.
T Consensus 90 a~~~~~~~ 97 (103)
T 2d9p_A 90 AQRKEERQ 97 (103)
T ss_dssp CSSCCCCC
T ss_pred ecccccCC
Confidence 99876544
No 69
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=2.7e-19 Score=134.59 Aligned_cols=85 Identities=24% Similarity=0.325 Sum_probs=78.6
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
..+.++|||+|||+.+++++|+++|++|| |..|+|++++.++.++|||||+|.+.++|.+|+ .||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34468999999999999999999999997 999999999988888999999999999999999 8999999999999999
Q ss_pred cCCCCcc
Q 015292 352 AKPQADQ 358 (409)
Q Consensus 352 a~~~~~~ 358 (409)
+.+....
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9886543
No 70
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.1e-19 Score=136.73 Aligned_cols=87 Identities=23% Similarity=0.335 Sum_probs=80.5
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCcee--------EEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceec
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT--------KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD 343 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--------~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~ 343 (409)
....++|||+|||+.+++++|+++|++||.|. .|+|+.++.++.++|||||+|.+.++|.+|+..|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34558999999999999999999999999999 6999999888888999999999999999999999999999
Q ss_pred CeEEEEEecCCCCcc
Q 015292 344 GQALECSLAKPQADQ 358 (409)
Q Consensus 344 g~~l~v~~a~~~~~~ 358 (409)
|+.|+|.+++++...
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999986553
No 71
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.81 E-value=5.6e-21 Score=164.61 Aligned_cols=81 Identities=21% Similarity=0.248 Sum_probs=77.0
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcC--ceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHG--RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
.++|||+|||+.+|+++|+++|++|| .|..|+|++++.++.+||||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 37899999999999999999999999 9999999999988888999999999999999999999999999999999999
Q ss_pred CCC
Q 015292 353 KPQ 355 (409)
Q Consensus 353 ~~~ 355 (409)
++.
T Consensus 148 ~~~ 150 (229)
T 3q2s_C 148 NKQ 150 (229)
T ss_dssp CHH
T ss_pred CCC
Confidence 764
No 72
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=132.42 Aligned_cols=79 Identities=22% Similarity=0.330 Sum_probs=72.1
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCce--ecCeEEEE
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE--LDGQALEC 349 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~--~~g~~l~v 349 (409)
..++++|||+|||+++|+++|+++|++||.|.+|.|++. ||||||+|.+.++|.+|+..|++.. |.|++|+|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 345689999999999999999999999999999999864 6999999999999999999999765 78999999
Q ss_pred EecCCCC
Q 015292 350 SLAKPQA 356 (409)
Q Consensus 350 ~~a~~~~ 356 (409)
.|++++.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998764
No 73
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=2.2e-19 Score=135.59 Aligned_cols=87 Identities=16% Similarity=0.284 Sum_probs=79.4
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecC---eEEEE
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG---QALEC 349 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g---~~l~v 349 (409)
...++|||+|||+.+++++|+++|++||.|..|.|+++. ++.++|||||+|.+.++|.+|+..|||..|.| +.|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 446899999999999999999999999999999999988 45568999999999999999999999999988 99999
Q ss_pred EecCCCCccCC
Q 015292 350 SLAKPQADQKS 360 (409)
Q Consensus 350 ~~a~~~~~~~~ 360 (409)
.++.+...+..
T Consensus 92 ~~a~~~~~~~~ 102 (105)
T 2dnh_A 92 KFADTDKESGP 102 (105)
T ss_dssp EESCSSCCCSC
T ss_pred EECccCcccCC
Confidence 99998766543
No 74
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-19 Score=133.57 Aligned_cols=80 Identities=15% Similarity=0.265 Sum_probs=72.8
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhC--CceecCeEEEEE
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGQALECS 350 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~--~~~~~g~~l~v~ 350 (409)
.+.++|||+|||+++|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|+..|+ +..|.|++|+|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34589999999999999999999999999999999986 5999999999999999999886 478999999999
Q ss_pred ecCCCCcc
Q 015292 351 LAKPQADQ 358 (409)
Q Consensus 351 ~a~~~~~~ 358 (409)
|++++...
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99876554
No 75
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=3.7e-20 Score=138.21 Aligned_cols=82 Identities=21% Similarity=0.234 Sum_probs=78.0
Q ss_pred ceEEEEcCCCC------CCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecC-eEE
Q 015292 275 VKAVYVKNLPR------NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG-QAL 347 (409)
Q Consensus 275 ~~~l~V~nLp~------~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g-~~l 347 (409)
.++|||+|||+ ++++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|.+|+..|||..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 47999999999 99999999999999999999999999988889999999999999999999999999999 999
Q ss_pred EEEecCCCC
Q 015292 348 ECSLAKPQA 356 (409)
Q Consensus 348 ~v~~a~~~~ 356 (409)
+|.++.+..
T Consensus 86 ~V~~a~~~~ 94 (100)
T 3ns6_A 86 FLYTMKDVE 94 (100)
T ss_dssp EEEESHHHH
T ss_pred EEEECchhh
Confidence 999998643
No 76
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=130.41 Aligned_cols=83 Identities=22% Similarity=0.418 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
...++|||+|||+++++++|+++|++||.|.+|+++.++.+|.++|||||+|.+.++|.+|++.|++..+.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred ccc
Q 015292 179 QAK 181 (409)
Q Consensus 179 ~~~ 181 (409)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 753
No 77
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=2.2e-20 Score=136.71 Aligned_cols=82 Identities=20% Similarity=0.241 Sum_probs=72.4
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcC--ceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHG--RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
.+|||+|||+++++++|+++|++|| .|..++|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999888889999999999999999999999999999999999998
Q ss_pred CCCc
Q 015292 354 PQAD 357 (409)
Q Consensus 354 ~~~~ 357 (409)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 8654
No 78
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.1e-19 Score=132.18 Aligned_cols=85 Identities=27% Similarity=0.593 Sum_probs=80.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 015292 178 SQAKY 182 (409)
Q Consensus 178 ~~~~~ 182 (409)
+.++.
T Consensus 82 a~~~~ 86 (95)
T 2dnz_A 82 VTERL 86 (95)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 87643
No 79
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.80 E-value=1.9e-19 Score=130.41 Aligned_cols=82 Identities=28% Similarity=0.557 Sum_probs=78.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++++++|+++|++||.|..|++++++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45679999999999999999999999999999999999988999999999999999999999999999999999999988
Q ss_pred cc
Q 015292 178 SQ 179 (409)
Q Consensus 178 ~~ 179 (409)
+.
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 80
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=136.63 Aligned_cols=85 Identities=26% Similarity=0.458 Sum_probs=80.0
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
....++|||+|||+.+++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44568999999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred cCCCC
Q 015292 352 AKPQA 356 (409)
Q Consensus 352 a~~~~ 356 (409)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98764
No 81
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.80 E-value=3.2e-19 Score=128.53 Aligned_cols=81 Identities=16% Similarity=0.395 Sum_probs=77.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeeccc
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 180 (409)
+.+|||+|||+++++++|+++|++||.|.+|++++++.+|.++|||||+|.+.++|.+|+..|++..+.|+.|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999875
Q ss_pred c
Q 015292 181 K 181 (409)
Q Consensus 181 ~ 181 (409)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 82
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=141.40 Aligned_cols=86 Identities=17% Similarity=0.261 Sum_probs=79.5
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeE--EeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCc----eecCe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK--VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY----ELDGQ 345 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~----~~~g~ 345 (409)
....++|||+|||+.+|+++|+++|++||.|.. |+|++++.++.+||||||+|.+. +|.+|+..|||. .|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345689999999999999999999999999976 99999998888899999999999 999999999999 99999
Q ss_pred EEEEEecCCCCcc
Q 015292 346 ALECSLAKPQADQ 358 (409)
Q Consensus 346 ~l~v~~a~~~~~~ 358 (409)
.|+|.++++....
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999886543
No 83
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=9.9e-19 Score=132.92 Aligned_cols=83 Identities=20% Similarity=0.412 Sum_probs=75.3
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
....++|||+|||+.+++++|+++|++||.|..|.|..+. .++|||||+|.+.++|.+|+..||+..|.|+.|+|.|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR---GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS---SSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3455899999999999999999999999999999997653 3589999999999999999999999999999999999
Q ss_pred cCCCCc
Q 015292 352 AKPQAD 357 (409)
Q Consensus 352 a~~~~~ 357 (409)
+++...
T Consensus 96 a~~~~~ 101 (109)
T 1x4a_A 96 PRSGRG 101 (109)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 988644
No 84
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=136.08 Aligned_cols=86 Identities=20% Similarity=0.260 Sum_probs=79.0
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhh-cCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCce-ecCeEEEEE
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEH-HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE-LDGQALECS 350 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~-~~g~~l~v~ 350 (409)
.+.++|||+|||+.+++++|+++|++ ||.|..|+|+++. ++.++|||||+|.+.++|.+|+..||+.. |.|+.|+|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 34589999999999999999999999 9999999999998 66679999999999999999999999999 999999999
Q ss_pred ecCCCCccC
Q 015292 351 LAKPQADQK 359 (409)
Q Consensus 351 ~a~~~~~~~ 359 (409)
++.++....
T Consensus 86 ~a~~~~~~~ 94 (104)
T 2dhg_A 86 VAIPKASRV 94 (104)
T ss_dssp BCCCCCSCC
T ss_pred EccCCCcCC
Confidence 998765543
No 85
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=1.3e-19 Score=134.32 Aligned_cols=84 Identities=29% Similarity=0.619 Sum_probs=80.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeeccc
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 180 (409)
+++|||+|||.++++++|+++|++||.|.+|+|+.++.+|.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 58999999999999999999999999999999999998999999999999999999999999999999999999999987
Q ss_pred cccc
Q 015292 181 KYRL 184 (409)
Q Consensus 181 ~~~l 184 (409)
....
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 6543
No 86
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2e-19 Score=136.12 Aligned_cols=85 Identities=13% Similarity=0.212 Sum_probs=79.9
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34568999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred cCCCC
Q 015292 352 AKPQA 356 (409)
Q Consensus 352 a~~~~ 356 (409)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98754
No 87
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=131.34 Aligned_cols=82 Identities=26% Similarity=0.409 Sum_probs=76.5
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCC-CCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE-KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~-~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
.++|||+|||+++++++|+++|++||.|..|.|+.+..++. ++|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 37999999999999999999999999999999999886554 68999999999999999999999999999999999998
Q ss_pred CCC
Q 015292 354 PQA 356 (409)
Q Consensus 354 ~~~ 356 (409)
+..
T Consensus 84 ~~~ 86 (88)
T 4a8x_A 84 APW 86 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 88
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=134.10 Aligned_cols=83 Identities=22% Similarity=0.319 Sum_probs=77.7
Q ss_pred CCccceEEEEcCCCCCCCHHHHHHHHhhcCceeE--------EeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCcee
Q 015292 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK--------VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342 (409)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--------v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~ 342 (409)
...+.++|||+|||+++++++|+++|++||.|.. |+|+.++.++.++|||||+|.+.++|.+|+..|||..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3345589999999999999999999999999999 99999988888899999999999999999999999999
Q ss_pred cCeEEEEEecC
Q 015292 343 DGQALECSLAK 353 (409)
Q Consensus 343 ~g~~l~v~~a~ 353 (409)
.|+.|+|.+|+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999985
No 89
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=9.2e-20 Score=133.38 Aligned_cols=80 Identities=24% Similarity=0.464 Sum_probs=72.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccC--CeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 102 SEVYIGGIPHDASEHDLRDFCQSIG--EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 102 ~~l~v~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
.+|||+|||+++|+++|+++|++|| .|.+|+|+.++.+|+++|||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999887
Q ss_pred cc
Q 015292 180 AK 181 (409)
Q Consensus 180 ~~ 181 (409)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 90
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=3e-19 Score=139.68 Aligned_cols=87 Identities=13% Similarity=0.203 Sum_probs=80.8
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
....++|||+|||+.+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34468999999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred cCCCCcc
Q 015292 352 AKPQADQ 358 (409)
Q Consensus 352 a~~~~~~ 358 (409)
+.+....
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9876543
No 91
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.5e-19 Score=131.92 Aligned_cols=84 Identities=31% Similarity=0.514 Sum_probs=79.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe
Q 015292 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (409)
Q Consensus 97 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 176 (409)
.+...++|||+|||+++++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccc
Q 015292 177 TSQA 180 (409)
Q Consensus 177 ~~~~ 180 (409)
++.+
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 8764
No 92
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.8e-19 Score=132.74 Aligned_cols=86 Identities=26% Similarity=0.399 Sum_probs=80.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccccc
Q 015292 178 SQAKYR 183 (409)
Q Consensus 178 ~~~~~~ 183 (409)
+.++..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 886543
No 93
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.5e-19 Score=135.26 Aligned_cols=87 Identities=23% Similarity=0.422 Sum_probs=80.4
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
....++|||+|||+.+++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+.. |+..|.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 34558999999999999999999999999999999999988888899999999999999999998 99999999999999
Q ss_pred cCCCCccC
Q 015292 352 AKPQADQK 359 (409)
Q Consensus 352 a~~~~~~~ 359 (409)
+.++....
T Consensus 92 a~~~~~~~ 99 (105)
T 2dh8_A 92 CTPRGMQP 99 (105)
T ss_dssp SCCSSCCT
T ss_pred ccCCCCCC
Confidence 99876543
No 94
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.79 E-value=3.5e-19 Score=125.17 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=69.4
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
+..|||+||++.+|+++|+++|.+||+|.+++|.. +||||||+|.+.++|.+|+..||+..+.|++|+|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 36899999999999999999999999999999977 37999999999999999999999999999999999995
No 95
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.79 E-value=2.1e-18 Score=134.29 Aligned_cols=87 Identities=28% Similarity=0.428 Sum_probs=80.2
Q ss_pred CCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015292 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (409)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v 349 (409)
.....+++|||+|||+.+++++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345567999999999999999999999999999999999998 6666999999999999999999999999999999999
Q ss_pred EecCCCCc
Q 015292 350 SLAKPQAD 357 (409)
Q Consensus 350 ~~a~~~~~ 357 (409)
.+|.+...
T Consensus 109 ~~a~~~~~ 116 (124)
T 2kt5_A 109 QLVASQID 116 (124)
T ss_dssp EEECCTTC
T ss_pred EEeCCCCC
Confidence 99987644
No 96
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=4.7e-19 Score=132.18 Aligned_cols=84 Identities=21% Similarity=0.431 Sum_probs=79.5
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeE--------EEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCc
Q 015292 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTE--------VRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167 (409)
Q Consensus 96 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~ 167 (409)
..+...++|||+|||+++|+++|+++|++||.|.. |+|+.++.+|+++|||||+|.+.++|.+|++.|++..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 45667899999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cCCceEEEeecc
Q 015292 168 FKGKKIRCSTSQ 179 (409)
Q Consensus 168 ~~g~~l~v~~~~ 179 (409)
|.|+.|+|.++.
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999998863
No 97
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.1e-19 Score=134.18 Aligned_cols=85 Identities=16% Similarity=0.248 Sum_probs=79.4
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCcee-EEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeE----E
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT-KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA----L 347 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~-~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~----l 347 (409)
...++|||+|||+.+++++|+++|++||.|. .|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3458999999999999999999999999999 9999999988888999999999999999999999999999999 9
Q ss_pred EEEecCCCCc
Q 015292 348 ECSLAKPQAD 357 (409)
Q Consensus 348 ~v~~a~~~~~ 357 (409)
+|.|+++...
T Consensus 87 ~v~~a~~~~~ 96 (99)
T 2div_A 87 KLNYATYSGP 96 (99)
T ss_dssp CEEETTCCSS
T ss_pred EEeecCCCCC
Confidence 9999987643
No 98
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.1e-19 Score=132.16 Aligned_cols=79 Identities=18% Similarity=0.214 Sum_probs=71.7
Q ss_pred ccceEEEEcCCCC-CCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCC--ceecCeEEEE
Q 015292 273 SQVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK--YELDGQALEC 349 (409)
Q Consensus 273 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~--~~~~g~~l~v 349 (409)
.++++|||+|||+ .+++++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|+..||+ ..|.|++|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3568999999999 9999999999999999999999976 48999999999999999999885 4599999999
Q ss_pred EecCCCCc
Q 015292 350 SLAKPQAD 357 (409)
Q Consensus 350 ~~a~~~~~ 357 (409)
.||+....
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x4d_A 87 HLSQKYKR 94 (102)
T ss_dssp EEECCCTT
T ss_pred EECCCCCC
Confidence 99986544
No 99
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4e-19 Score=131.33 Aligned_cols=83 Identities=33% Similarity=0.571 Sum_probs=78.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe
Q 015292 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (409)
Q Consensus 97 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 176 (409)
.++..++|||+|||+++++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 35567999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecc
Q 015292 177 TSQ 179 (409)
Q Consensus 177 ~~~ 179 (409)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 863
No 100
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.5e-18 Score=133.12 Aligned_cols=84 Identities=20% Similarity=0.261 Sum_probs=77.4
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
...++|||+|||+.+++++|+++|++||.|..|+|+.++. +.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 3458999999999999999999999999999999999885 556899999999999999999999999999999999999
Q ss_pred CCCCc
Q 015292 353 KPQAD 357 (409)
Q Consensus 353 ~~~~~ 357 (409)
+....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 87544
No 101
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.79 E-value=3.9e-19 Score=129.94 Aligned_cols=80 Identities=16% Similarity=0.363 Sum_probs=76.3
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCC
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (409)
.++|||+|||+.+++++|+++|++||.|..+.|++++.++.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 479999999999999999999999999999999999888888999999999999999999 8999999999999999987
Q ss_pred C
Q 015292 355 Q 355 (409)
Q Consensus 355 ~ 355 (409)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 5
No 102
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4e-19 Score=136.74 Aligned_cols=86 Identities=21% Similarity=0.410 Sum_probs=80.0
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
....++|||+|||+.+++++|+++|+.||.|..|.|++++.++.++|||||+|.+.++|.+||.. ++..|.|+.|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34468999999999999999999999999999999999988888899999999999999999997 99999999999999
Q ss_pred cCCCCcc
Q 015292 352 AKPQADQ 358 (409)
Q Consensus 352 a~~~~~~ 358 (409)
+.++...
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9987553
No 103
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.2e-19 Score=131.56 Aligned_cols=84 Identities=26% Similarity=0.639 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
....++|||+|||+++++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|++ |++..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4567999999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred ccccc
Q 015292 178 SQAKY 182 (409)
Q Consensus 178 ~~~~~ 182 (409)
+.++.
T Consensus 86 a~~~~ 90 (99)
T 2dgs_A 86 AEPRD 90 (99)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 87643
No 104
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=8.6e-19 Score=131.04 Aligned_cols=83 Identities=24% Similarity=0.560 Sum_probs=78.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++|+++|+++|++||.|..|+|+.++ +|.++|||||+|.+.++|.+|++.|++..|.|+.|.|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.+.
T Consensus 93 a~~~ 96 (100)
T 2do4_A 93 SNSG 96 (100)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 105
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=4.5e-19 Score=134.16 Aligned_cols=85 Identities=24% Similarity=0.535 Sum_probs=80.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe
Q 015292 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (409)
Q Consensus 97 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 176 (409)
.+...++|||+|||+++|+++|+++|++||.|..|+|++++.+|.++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecccc
Q 015292 177 TSQAK 181 (409)
Q Consensus 177 ~~~~~ 181 (409)
++.++
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 98754
No 106
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=2.9e-19 Score=139.62 Aligned_cols=85 Identities=20% Similarity=0.298 Sum_probs=80.1
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
..+.++|||+|||+.+++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred cCCCC
Q 015292 352 AKPQA 356 (409)
Q Consensus 352 a~~~~ 356 (409)
+.++.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 98864
No 107
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=8.6e-20 Score=136.19 Aligned_cols=82 Identities=17% Similarity=0.280 Sum_probs=78.3
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCC-ce
Q 015292 100 HGSEVYIGGIPH------DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG-KK 172 (409)
Q Consensus 100 ~~~~l~v~nLp~------~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g-~~ 172 (409)
.+++|||+|||+ ++++++|+++|++||.|.+|+|++++.||+++|||||+|.+.++|.+|++.||+..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 358999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEeecccc
Q 015292 173 IRCSTSQAK 181 (409)
Q Consensus 173 l~v~~~~~~ 181 (409)
|.|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998754
No 108
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.79 E-value=6e-19 Score=136.22 Aligned_cols=82 Identities=23% Similarity=0.353 Sum_probs=77.2
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
....++|||+|||+++++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44568999999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred cC
Q 015292 352 AK 353 (409)
Q Consensus 352 a~ 353 (409)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 85
No 109
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-18 Score=128.68 Aligned_cols=82 Identities=15% Similarity=0.263 Sum_probs=73.6
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHh--CCceecCeEEEE
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT--EKYELDGQALEC 349 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l--~~~~~~g~~l~v 349 (409)
..++++|||+|||+.+++++|+++|++||.|.+|.|+++ ||||||+|.+.++|.+|+..| ++..|.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345689999999999999999999999999999999875 599999999999999999976 577899999999
Q ss_pred EecCCCCccC
Q 015292 350 SLAKPQADQK 359 (409)
Q Consensus 350 ~~a~~~~~~~ 359 (409)
.|++++....
T Consensus 86 ~~a~~~~~~~ 95 (101)
T 2cq1_A 86 QYSNHKELKT 95 (101)
T ss_dssp EECSCSSCCC
T ss_pred EEcCcccCcC
Confidence 9999766543
No 110
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=132.62 Aligned_cols=85 Identities=15% Similarity=0.291 Sum_probs=78.1
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCc-eeEEeeC-CCCCCCCCCcEEEEEeCCHHHHHHHHHHhC--CceecCeEEEE
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGR-ITKVVVP-PAKPGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGQALEC 349 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~-~~~~~~~~~g~afV~F~~~e~A~~A~~~l~--~~~~~g~~l~v 349 (409)
+.++|||+|||+.+++++|+++|+.||. |..|.|+ .++.++.++|||||+|.+.++|.+|+..|| +..|.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4589999999999999999999999998 9999998 777777789999999999999999999996 58999999999
Q ss_pred EecCCCCcc
Q 015292 350 SLAKPQADQ 358 (409)
Q Consensus 350 ~~a~~~~~~ 358 (409)
.|+++....
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999987653
No 111
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.3e-19 Score=132.84 Aligned_cols=84 Identities=17% Similarity=0.182 Sum_probs=78.0
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
....++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34458999999999999999999999999999998888888888899999999999999999999999999999999999
Q ss_pred cCCC
Q 015292 352 AKPQ 355 (409)
Q Consensus 352 a~~~ 355 (409)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8864
No 112
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.5e-19 Score=133.36 Aligned_cols=84 Identities=20% Similarity=0.440 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
....++|||+|||+++++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 44579999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.+.
T Consensus 92 a~~~ 95 (103)
T 2cq0_A 92 AKPS 95 (103)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8764
No 113
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=6.2e-19 Score=134.29 Aligned_cols=83 Identities=22% Similarity=0.405 Sum_probs=76.3
Q ss_pred cceEEEEcCCCCCCCHHHHH---HHHhhcCceeEEeeCCCCCCC---CCCcEEEEEeCCHHHHHHHHHHhCCceecCeEE
Q 015292 274 QVKAVYVKNLPRNVTQDQLK---KLFEHHGRITKVVVPPAKPGQ---EKNRIGFVHFAERSSAMKALKNTEKYELDGQAL 347 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~---~~F~~~G~v~~v~i~~~~~~~---~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l 347 (409)
..++|||+|||+.+++++|+ ++|++||.|..|.|+++..++ .++|||||+|.+.++|.+|+..|||..|.|++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 34789999999999999999 999999999999999887643 446999999999999999999999999999999
Q ss_pred EEEecCCCC
Q 015292 348 ECSLAKPQA 356 (409)
Q Consensus 348 ~v~~a~~~~ 356 (409)
+|.+|.++.
T Consensus 94 ~V~~a~~k~ 102 (111)
T 2cpi_A 94 KASLGTTKY 102 (111)
T ss_dssp EEESCCCCS
T ss_pred EEEeccccc
Confidence 999998865
No 114
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.5e-19 Score=133.82 Aligned_cols=79 Identities=22% Similarity=0.309 Sum_probs=74.5
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
..++|||+|||+++|+++|+++|++||.|.+|+|++++. +.++|||||+|.+.++|.+|+. +++..|+|+.|.|.++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 348999999999999999999999999999999999988 6679999999999999999999 89999999999999886
Q ss_pred C
Q 015292 354 P 354 (409)
Q Consensus 354 ~ 354 (409)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 115
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.4e-19 Score=133.08 Aligned_cols=86 Identities=27% Similarity=0.428 Sum_probs=80.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe
Q 015292 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (409)
Q Consensus 97 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 176 (409)
.+...++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eccccc
Q 015292 177 TSQAKY 182 (409)
Q Consensus 177 ~~~~~~ 182 (409)
++.+..
T Consensus 91 ~a~~~~ 96 (105)
T 1x5u_A 91 KASAHN 96 (105)
T ss_dssp ETTTTS
T ss_pred ECCCCC
Confidence 987654
No 116
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.79 E-value=4.9e-19 Score=131.12 Aligned_cols=82 Identities=26% Similarity=0.361 Sum_probs=76.4
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
....++|||+|||+.+++++|+++|++||.|..|+|++++. +.++|||||+|.+.++|.+|+..||+..|.|++|+|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34558999999999999999999999999999999999887 55689999999999999999999999999999999999
Q ss_pred cCC
Q 015292 352 AKP 354 (409)
Q Consensus 352 a~~ 354 (409)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 874
No 117
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.2e-19 Score=133.02 Aligned_cols=83 Identities=20% Similarity=0.418 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
...++|||+|||+++++++|+++|++||.|..|+|+.++.+|.++|||||+|.+.++|.+|+..|++..|.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 015292 179 QAK 181 (409)
Q Consensus 179 ~~~ 181 (409)
.++
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 754
No 118
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=2.1e-19 Score=154.74 Aligned_cols=81 Identities=22% Similarity=0.452 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccC--CeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIG--EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
..++|||+|||+++|+++|+++|++|| .|.+|+|++++.+|+++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 015292 178 SQA 180 (409)
Q Consensus 178 ~~~ 180 (409)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 874
No 119
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.2e-19 Score=132.80 Aligned_cols=84 Identities=26% Similarity=0.608 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.+.
T Consensus 89 a~~~ 92 (102)
T 1x5s_A 89 AGKS 92 (102)
T ss_dssp EECC
T ss_pred CCCC
Confidence 8754
No 120
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.78 E-value=6.9e-19 Score=135.18 Aligned_cols=85 Identities=24% Similarity=0.461 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
.+..++|||+|||+++++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccccc
Q 015292 178 SQAKY 182 (409)
Q Consensus 178 ~~~~~ 182 (409)
+.++.
T Consensus 102 a~~~~ 106 (115)
T 2cpz_A 102 KRSKN 106 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 87643
No 121
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.78 E-value=1.1e-18 Score=134.13 Aligned_cols=85 Identities=22% Similarity=0.447 Sum_probs=80.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccccc
Q 015292 178 SQAKY 182 (409)
Q Consensus 178 ~~~~~ 182 (409)
+.+..
T Consensus 92 a~~~~ 96 (115)
T 2dgo_A 92 ATRKP 96 (115)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 87643
No 122
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.6e-19 Score=132.42 Aligned_cols=80 Identities=24% Similarity=0.437 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
...++|||+|||+++|+++|+++|++||+|.+|+|++++. |.++|||||+|.+.++|.+|+. +++..|.|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3468999999999999999999999999999999999987 9999999999999999999998 8999999999999876
Q ss_pred cc
Q 015292 179 QA 180 (409)
Q Consensus 179 ~~ 180 (409)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 53
No 123
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.78 E-value=2.9e-18 Score=128.79 Aligned_cols=79 Identities=33% Similarity=0.646 Sum_probs=73.1
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
.+.++|||+|||+++++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 445899999999999999999999999999999997 479999999999999999999999999999999999
Q ss_pred CCCCccC
Q 015292 353 KPQADQK 359 (409)
Q Consensus 353 ~~~~~~~ 359 (409)
++.....
T Consensus 81 ~~~~~~~ 87 (103)
T 2dgu_A 81 KPPDQKR 87 (103)
T ss_dssp CCCCCCC
T ss_pred CCCcccc
Confidence 9876544
No 124
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=127.31 Aligned_cols=78 Identities=27% Similarity=0.592 Sum_probs=72.8
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
.+.++|||+|||.++++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 455899999999999999999999999999999997 489999999999999999999999999999999999
Q ss_pred CCCCcc
Q 015292 353 KPQADQ 358 (409)
Q Consensus 353 ~~~~~~ 358 (409)
+++...
T Consensus 78 ~~~~~~ 83 (90)
T 2dnq_A 78 KNKSKA 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 986553
No 125
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.5e-19 Score=136.60 Aligned_cols=85 Identities=16% Similarity=0.332 Sum_probs=79.4
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
...++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34689999999999999999999999999999999999988888999999999999999999 89999999999999999
Q ss_pred CCCCcc
Q 015292 353 KPQADQ 358 (409)
Q Consensus 353 ~~~~~~ 358 (409)
++...+
T Consensus 102 ~~~~~~ 107 (114)
T 2cq4_A 102 QAEKNR 107 (114)
T ss_dssp HHHHHH
T ss_pred CCCccC
Confidence 876543
No 126
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.78 E-value=5.4e-19 Score=130.05 Aligned_cols=83 Identities=20% Similarity=0.350 Sum_probs=76.3
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
.+.++|||+|||+.+++++|+++|++||.|..|.|+++ ++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 44589999999999999999999999999999999873 4556899999999999999999999999999999999999
Q ss_pred CCCCc
Q 015292 353 KPQAD 357 (409)
Q Consensus 353 ~~~~~ 357 (409)
++...
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 88654
No 127
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=9.7e-19 Score=133.54 Aligned_cols=85 Identities=24% Similarity=0.447 Sum_probs=80.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhC------CCccCC
Q 015292 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN------NTEFKG 170 (409)
Q Consensus 97 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~------~~~~~g 170 (409)
.+...++|||+|||+++|+++|+++|++||.|..|+|++++.+|.++|||||+|.+.++|.+|+..|+ +..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred ceEEEeecccc
Q 015292 171 KKIRCSTSQAK 181 (409)
Q Consensus 171 ~~l~v~~~~~~ 181 (409)
+.|.|.++.++
T Consensus 91 ~~l~v~~a~~~ 101 (111)
T 1x4h_A 91 RQLKVDLAVTR 101 (111)
T ss_dssp CEEEEECCCCC
T ss_pred EEEEEEECCCC
Confidence 99999998764
No 128
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=130.02 Aligned_cols=81 Identities=22% Similarity=0.271 Sum_probs=72.6
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCC--ceecCeEEEEE
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK--YELDGQALECS 350 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~--~~~~g~~l~v~ 350 (409)
.++++|||+|||+.+++++|+++|++||.|..|.|+++ ||||||+|.+.++|.+|+..|++ ..|.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45589999999999999999999999999999999875 59999999999999999998865 45999999999
Q ss_pred ecCCCCccC
Q 015292 351 LAKPQADQK 359 (409)
Q Consensus 351 ~a~~~~~~~ 359 (409)
|++++....
T Consensus 87 ~a~~~~~~~ 95 (104)
T 1wex_A 87 YSTSKRITR 95 (104)
T ss_dssp ECSSSSCCC
T ss_pred EccCccccC
Confidence 999866543
No 129
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.6e-18 Score=129.42 Aligned_cols=78 Identities=17% Similarity=0.270 Sum_probs=73.0
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecC-----eEEE
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG-----QALE 348 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g-----~~l~ 348 (409)
..++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..||+..|.| +.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 4589999999999999999999999999999999886 899999999999999999999999999 9999
Q ss_pred EEecCCCCcc
Q 015292 349 CSLAKPQADQ 358 (409)
Q Consensus 349 v~~a~~~~~~ 358 (409)
|.++.+....
T Consensus 87 V~~a~~~~~~ 96 (108)
T 1x4c_A 87 VKVDGPRSPS 96 (108)
T ss_dssp EEESSCCSCC
T ss_pred EEeCCCCCCC
Confidence 9999986543
No 130
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=5.1e-19 Score=133.06 Aligned_cols=84 Identities=21% Similarity=0.354 Sum_probs=79.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
....++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.+.
T Consensus 90 a~~~ 93 (103)
T 2dnm_A 90 ARYG 93 (103)
T ss_dssp CSSC
T ss_pred CCcC
Confidence 8754
No 131
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.3e-19 Score=131.68 Aligned_cols=83 Identities=25% Similarity=0.474 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEE-EEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEV-RIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v-~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
...++|||+|||+++|+++|+++|++||.|..| +|++++.+|.++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.+.
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 8754
No 132
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.78 E-value=1.2e-18 Score=132.17 Aligned_cols=85 Identities=24% Similarity=0.418 Sum_probs=76.9
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
...++|||+|||+.+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..+ +..|+|+.|+|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 44589999999999999999999999999999999999988888999999999999999999976 58999999999999
Q ss_pred CCCCcc
Q 015292 353 KPQADQ 358 (409)
Q Consensus 353 ~~~~~~ 358 (409)
.++..+
T Consensus 102 ~~~~~~ 107 (109)
T 2rs2_A 102 FPRRAQ 107 (109)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 876543
No 133
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1.3e-18 Score=126.51 Aligned_cols=80 Identities=24% Similarity=0.579 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++|+++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|++ +++..|.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999995 688899999999986
Q ss_pred c
Q 015292 178 S 178 (409)
Q Consensus 178 ~ 178 (409)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 134
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7e-19 Score=131.04 Aligned_cols=84 Identities=24% Similarity=0.428 Sum_probs=78.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCC---CCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKD---SSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 175 (409)
.+.++|||+|||+++|+++|+++|++||.|..|+|+.++. ++.++|||||+|.+.++|.+|+..|++..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4578999999999999999999999999999999999876 6689999999999999999999999999999999999
Q ss_pred eeccccc
Q 015292 176 STSQAKY 182 (409)
Q Consensus 176 ~~~~~~~ 182 (409)
.++.+..
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9987643
No 135
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.1e-19 Score=132.85 Aligned_cols=84 Identities=27% Similarity=0.540 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45679999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.+.
T Consensus 89 a~~~ 92 (102)
T 2cqb_A 89 AKPM 92 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 136
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.78 E-value=3.4e-19 Score=125.68 Aligned_cols=75 Identities=24% Similarity=0.437 Sum_probs=71.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 277 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
+|||+|||+++++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|+. ||+..|+|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999999888889999999999999999998 9999999999999886
No 137
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.2e-19 Score=132.80 Aligned_cols=83 Identities=25% Similarity=0.414 Sum_probs=76.6
Q ss_pred CCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015292 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (409)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~ 350 (409)
.....++|||+|||..+++++|+++|++||.|..|+|+++..+ ++|||||+|.+.++|.+|+..|||..|+|+.|+|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~--~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTB--CTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCC--CceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3445689999999999999999999999999999999988643 58999999999999999999999999999999999
Q ss_pred ecCCC
Q 015292 351 LAKPQ 355 (409)
Q Consensus 351 ~a~~~ 355 (409)
+++++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99875
No 138
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=8.5e-19 Score=136.93 Aligned_cols=86 Identities=33% Similarity=0.510 Sum_probs=81.0
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 015292 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (409)
Q Consensus 96 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 175 (409)
..+...++|||+|||+++|+++|+++|++||.|..|+|++++.+|.++|||||+|.+.++|.+|+..|++..|.|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccc
Q 015292 176 STSQAK 181 (409)
Q Consensus 176 ~~~~~~ 181 (409)
.++.++
T Consensus 121 ~~a~~~ 126 (129)
T 2kxn_B 121 DFSITK 126 (129)
T ss_dssp SCCSSS
T ss_pred EEecCC
Confidence 998754
No 139
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.8e-18 Score=129.00 Aligned_cols=85 Identities=25% Similarity=0.454 Sum_probs=77.7
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
..+.++|||+|||+.+++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+. ++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3445899999999999999999999999999999999998888889999999999999999999 46799999999999
Q ss_pred cCCCCcc
Q 015292 352 AKPQADQ 358 (409)
Q Consensus 352 a~~~~~~ 358 (409)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9987553
No 140
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.5e-19 Score=130.26 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=72.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCC--CccCCceEE
Q 015292 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN--TEFKGKKIR 174 (409)
Q Consensus 97 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~--~~~~g~~l~ 174 (409)
.+...++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.|++ ..|.|++|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4667899999999999999999999999999999999875 79999999999999999998864 789999999
Q ss_pred Eeecccc
Q 015292 175 CSTSQAK 181 (409)
Q Consensus 175 v~~~~~~ 181 (409)
|.++.++
T Consensus 86 V~~A~~~ 92 (105)
T 1sjq_A 86 IQFSNHK 92 (105)
T ss_dssp BCCCSSS
T ss_pred EEEcCCC
Confidence 9998754
No 141
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.78 E-value=3.5e-19 Score=133.00 Aligned_cols=83 Identities=22% Similarity=0.402 Sum_probs=74.9
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCC-CCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAK-PGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~ 350 (409)
....++|||+|||+++++++|+++|+.|| |..|+|++++ .++.++|||||+|.+.++|.+|+ .|||..|+|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34468999999999999999999999999 9999999998 57777999999999999999999 899999999999999
Q ss_pred ecCCCC
Q 015292 351 LAKPQA 356 (409)
Q Consensus 351 ~a~~~~ 356 (409)
++++..
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998754
No 142
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=1.1e-18 Score=132.24 Aligned_cols=81 Identities=25% Similarity=0.384 Sum_probs=76.0
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456899999999999999999999999999999999998 666689999999999999999999999999999999999
Q ss_pred cC
Q 015292 352 AK 353 (409)
Q Consensus 352 a~ 353 (409)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 143
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1.1e-18 Score=126.97 Aligned_cols=79 Identities=20% Similarity=0.399 Sum_probs=73.8
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
.+.++|||+|||+.+++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+. +++..|+|+.|.|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 345899999999999999999999999999999999998888889999999999999999997 5888999999999986
No 144
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=4.6e-18 Score=124.91 Aligned_cols=79 Identities=19% Similarity=0.374 Sum_probs=72.7
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
....++|||+|||+.+++++|+++|++||.|..|.|++ +||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 34458999999999999999999999999999999973 6999999999999999999999999999999999
Q ss_pred cCCCCcc
Q 015292 352 AKPQADQ 358 (409)
Q Consensus 352 a~~~~~~ 358 (409)
++++...
T Consensus 79 a~~~~~~ 85 (92)
T 2dgt_A 79 STSRLRT 85 (92)
T ss_dssp SSCCCSC
T ss_pred ccCCCCC
Confidence 9886543
No 145
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=131.68 Aligned_cols=86 Identities=24% Similarity=0.492 Sum_probs=80.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeC-CCCCCceeeEEEEecCHHHHHHHHHHh-CCCccCCceEEE
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG-KDSSENKGFAFVTFRNVELASKAIDKL-NNTEFKGKKIRC 175 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~a~~~l-~~~~~~g~~l~v 175 (409)
....++|||+|||+++|+++|+++|++||.|..|+|+.+ +.++.++|||||+|.+.++|.+|+..| ++..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 446799999999999999999999999999999999998 788999999999999999999999999 999999999999
Q ss_pred eecccccc
Q 015292 176 STSQAKYR 183 (409)
Q Consensus 176 ~~~~~~~~ 183 (409)
.++.+...
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99986543
No 146
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.77 E-value=3.7e-19 Score=131.77 Aligned_cols=81 Identities=17% Similarity=0.179 Sum_probs=75.6
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
+.++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 34899999999999999999999999999999999888888889999999999999999999999999999999999987
Q ss_pred C
Q 015292 354 P 354 (409)
Q Consensus 354 ~ 354 (409)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 147
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=1.3e-18 Score=142.47 Aligned_cols=84 Identities=21% Similarity=0.377 Sum_probs=78.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
....++|||+|||+++|+++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.+.
T Consensus 149 a~~~ 152 (165)
T 1rk8_A 149 CFVK 152 (165)
T ss_dssp SEEC
T ss_pred ecCC
Confidence 8753
No 148
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=128.62 Aligned_cols=82 Identities=28% Similarity=0.442 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++++++|+++|++||+|..|+|+.++. |.++|||||+|.+.++|.+|++.|++..|.|+.|.|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34568999999999999999999999999999999999976 99999999999999999999999999999999999998
Q ss_pred ccc
Q 015292 178 SQA 180 (409)
Q Consensus 178 ~~~ 180 (409)
+..
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 753
No 149
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.5e-18 Score=127.99 Aligned_cols=82 Identities=27% Similarity=0.466 Sum_probs=72.8
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
..+.++|||+|||+.+++++|+++|++||.| +|+.+ .++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3456899999999999999999999999987 56666 4455689999999999999999999999999999999999
Q ss_pred cCCCCc
Q 015292 352 AKPQAD 357 (409)
Q Consensus 352 a~~~~~ 357 (409)
++++..
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 988644
No 150
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=7.4e-19 Score=141.76 Aligned_cols=82 Identities=21% Similarity=0.233 Sum_probs=77.7
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcC--ceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHG--RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
.++|||+|||+++++++|+++|+.|| .|..|+|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|+|.++
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 47999999999999999999999999 9999999999988888999999999999999999999999999999999999
Q ss_pred CCCC
Q 015292 353 KPQA 356 (409)
Q Consensus 353 ~~~~ 356 (409)
.++.
T Consensus 135 ~~~~ 138 (156)
T 3n9u_C 135 TRQN 138 (156)
T ss_dssp CHHH
T ss_pred CCCc
Confidence 8643
No 151
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=132.08 Aligned_cols=82 Identities=15% Similarity=0.261 Sum_probs=73.9
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhC--CceecCeEEEE
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGQALEC 349 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~--~~~~~g~~l~v 349 (409)
..++++|||+|||+++++++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|+..|+ +..|.|++|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 345689999999999999999999999999999999975 5999999999999999999887 46899999999
Q ss_pred EecCCCCccC
Q 015292 350 SLAKPQADQK 359 (409)
Q Consensus 350 ~~a~~~~~~~ 359 (409)
.|++++....
T Consensus 102 ~~a~~k~~~~ 111 (119)
T 2ad9_A 102 QFSNHKELKT 111 (119)
T ss_dssp EECSSSSCCC
T ss_pred EEccCCCCCc
Confidence 9998766543
No 152
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=140.54 Aligned_cols=82 Identities=21% Similarity=0.416 Sum_probs=77.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccC--CeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIG--EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
..++|||+|||+++|+++|+++|++|| .|.+|+|+.++.+|+++|||||+|.+.++|.+||..|++..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8753
No 153
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=126.77 Aligned_cols=78 Identities=26% Similarity=0.325 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCc--cCCceEEE
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE--FKGKKIRC 175 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~--~~g~~l~v 175 (409)
.+++++|||+|||+++|+++|+++|++||.|.+|++++. ||||||+|.+.++|.+|++.|++.. +.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 456789999999999999999999999999999999863 7899999999999999999999875 78999999
Q ss_pred eecccc
Q 015292 176 STSQAK 181 (409)
Q Consensus 176 ~~~~~~ 181 (409)
.++.++
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 998754
No 154
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=130.12 Aligned_cols=84 Identities=18% Similarity=0.388 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCee-EEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCce----
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT-EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKK---- 172 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~---- 172 (409)
....++|||+|||+++++++|+++|++||.|. .|+|++++.+|.++|||||+|.+.++|.+|++.||+..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 44679999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEeecccc
Q 015292 173 IRCSTSQAK 181 (409)
Q Consensus 173 l~v~~~~~~ 181 (409)
|+|.++.+.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999988753
No 155
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=2.7e-18 Score=129.61 Aligned_cols=83 Identities=22% Similarity=0.391 Sum_probs=77.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCC---ceEE
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG---KKIR 174 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g---~~l~ 174 (409)
....++|||+|||+++++++|+++|++||.|..|+|+.++ +|.++|||||+|.+.++|.+|++.|++..+.| +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457999999999999999999999999999999999997 69999999999999999999999999999998 9999
Q ss_pred Eeecccc
Q 015292 175 CSTSQAK 181 (409)
Q Consensus 175 v~~~~~~ 181 (409)
|.++.+.
T Consensus 91 V~~a~~~ 97 (105)
T 2dnh_A 91 VKFADTD 97 (105)
T ss_dssp EEESCSS
T ss_pred EEECccC
Confidence 9998754
No 156
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.3e-19 Score=134.44 Aligned_cols=85 Identities=24% Similarity=0.485 Sum_probs=80.0
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
..++|||+|||+.+++++|+++|+.||.|..|.|++++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45899999999999999999999999999999999998888889999999999999999999999999999999999999
Q ss_pred CCCcc
Q 015292 354 PQADQ 358 (409)
Q Consensus 354 ~~~~~ 358 (409)
+....
T Consensus 87 ~~~~~ 91 (104)
T 1p1t_A 87 SEKNK 91 (104)
T ss_dssp CTTHH
T ss_pred Cccch
Confidence 87654
No 157
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3e-18 Score=128.83 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=75.2
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeE-EeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
...++|||+|||+.+++++|+++|++||.|.. |.|+.+ .++.++|||||+|.+.++|.+||.. |+..|+||.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 34589999999999999999999999999997 999988 5556699999999999999999997 99999999999999
Q ss_pred cCCCCc
Q 015292 352 AKPQAD 357 (409)
Q Consensus 352 a~~~~~ 357 (409)
+.+...
T Consensus 91 ~~~~~~ 96 (104)
T 1wg5_A 91 SSRAEV 96 (104)
T ss_dssp ECTTTS
T ss_pred CCHHHH
Confidence 987554
No 158
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=1.5e-18 Score=126.81 Aligned_cols=80 Identities=25% Similarity=0.524 Sum_probs=76.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeeccc
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 180 (409)
.++|||+|||+++|+++|+++|++||.|..|+++.++.+|.++|||||+|.+.++|.+|+ .+++..|.|+.|+|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 489999999999999999999999999999999999889999999999999999999999 8999999999999999875
Q ss_pred c
Q 015292 181 K 181 (409)
Q Consensus 181 ~ 181 (409)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 159
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=129.75 Aligned_cols=82 Identities=24% Similarity=0.413 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++|+++|+++|++||.|..|+|+.+ +|.++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 446799999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.++
T Consensus 90 a~~~ 93 (103)
T 2d9p_A 90 AQRK 93 (103)
T ss_dssp CSSC
T ss_pred eccc
Confidence 8764
No 160
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.77 E-value=1.4e-18 Score=132.30 Aligned_cols=84 Identities=21% Similarity=0.377 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
....++|||+|||+++|+++|+.+|++||.|..|+|+.++.+|.++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.++
T Consensus 103 a~~~ 106 (110)
T 1oo0_B 103 CFVK 106 (110)
T ss_dssp SEES
T ss_pred cccC
Confidence 8753
No 161
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=1.2e-18 Score=131.75 Aligned_cols=85 Identities=25% Similarity=0.451 Sum_probs=79.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCcc---CCceEE
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF---KGKKIR 174 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~---~g~~l~ 174 (409)
+...++|||+|||+++|+++|+++|++||.|..|+|+.++.+|.++|||||+|.+.++|.+|++.|++..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999987 899999
Q ss_pred Eeeccccc
Q 015292 175 CSTSQAKY 182 (409)
Q Consensus 175 v~~~~~~~ 182 (409)
|.++.+..
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99987643
No 162
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-19 Score=130.54 Aligned_cols=80 Identities=24% Similarity=0.294 Sum_probs=75.4
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
+.++|||+|||+.+++++|+++|++||.|..+.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 45899999999999999999999999999999999998888889999999999999999999999999999999887765
No 163
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=2.8e-18 Score=130.03 Aligned_cols=82 Identities=17% Similarity=0.297 Sum_probs=77.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe
Q 015292 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (409)
Q Consensus 97 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 176 (409)
.....++|||+|||+.+|+++|+++|++||.|..|+|+.+. +|.++|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecc
Q 015292 177 TSQ 179 (409)
Q Consensus 177 ~~~ 179 (409)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 874
No 164
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=132.48 Aligned_cols=83 Identities=29% Similarity=0.576 Sum_probs=78.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++|+++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++|.+|++.|++..|.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.+.
T Consensus 83 a~~~ 86 (116)
T 2fy1_A 83 AKKP 86 (116)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8754
No 165
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.1e-19 Score=129.17 Aligned_cols=82 Identities=24% Similarity=0.487 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++++++|+++|++||.|..|+|+.++.+|.++|||||+|.+.++|.+|++.||+..|.|+.|++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35679999999999999999999999999999999999998999999999999999999999999999999999998876
Q ss_pred cc
Q 015292 178 SQ 179 (409)
Q Consensus 178 ~~ 179 (409)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 166
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.77 E-value=2.5e-18 Score=129.63 Aligned_cols=77 Identities=19% Similarity=0.264 Sum_probs=70.7
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcC-ceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
.++|||+|||+++++++|+++|++|| .|..+.|..++ ++|||||+|.+.++|.+||..|||..|.|+.|+|.+++
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~----~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD----FDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS----SSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC----CCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 48999999999999999999999999 89999997532 58999999999999999999999999999999999987
Q ss_pred CC
Q 015292 354 PQ 355 (409)
Q Consensus 354 ~~ 355 (409)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 167
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.6e-19 Score=134.49 Aligned_cols=84 Identities=15% Similarity=0.157 Sum_probs=77.0
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCce-eEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v-~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
...++|||+|||+++++++|+++|+.||.| ..|+|++++ ++.++|||||+|.+.++|.+||.. |+..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 345899999999999999999999999999 899999998 666799999999999999999997 99999999999999
Q ss_pred cCCCCcc
Q 015292 352 AKPQADQ 358 (409)
Q Consensus 352 a~~~~~~ 358 (409)
+.++...
T Consensus 91 a~~~~~~ 97 (114)
T 2cpy_A 91 VTLEDMR 97 (114)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
Confidence 9876543
No 168
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4e-18 Score=129.48 Aligned_cols=79 Identities=23% Similarity=0.452 Sum_probs=74.1
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
..++|||+|||..+++++|+.+|++||.|..|+|+++ +|||||+|.+.++|.+|+..|||..|.|+.|+|.|++
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 3589999999999999999999999999999999987 5999999999999999999999999999999999999
Q ss_pred CCCcc
Q 015292 354 PQADQ 358 (409)
Q Consensus 354 ~~~~~ 358 (409)
+....
T Consensus 98 ~~~~~ 102 (109)
T 1x4g_A 98 ESPDM 102 (109)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87553
No 169
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.9e-19 Score=131.47 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=73.2
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
...++|||+|||+++|+++|+++|++||. ..|+|++++ ++.++|||||+|.+.++|.+||. +|+..|.||.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 34589999999999999999999999995 599999998 56669999999999999999995 7999999999999998
Q ss_pred CCCC
Q 015292 353 KPQA 356 (409)
Q Consensus 353 ~~~~ 356 (409)
.+..
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 170
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=128.86 Aligned_cols=77 Identities=21% Similarity=0.328 Sum_probs=72.8
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCC
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (409)
++|||+|||+++++++|+++|++||.|..|.|+++ ++|||||+|.+.++|.+|+..|||..|.|+.|+|.++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999987 4799999999999999999999999999999999999987
Q ss_pred Cc
Q 015292 356 AD 357 (409)
Q Consensus 356 ~~ 357 (409)
..
T Consensus 76 ~~ 77 (101)
T 2hvz_A 76 PR 77 (101)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 171
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=7e-19 Score=130.28 Aligned_cols=82 Identities=20% Similarity=0.301 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
+..++|||+|||+++|+++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34689999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred cc
Q 015292 179 QA 180 (409)
Q Consensus 179 ~~ 180 (409)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 172
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=129.91 Aligned_cols=83 Identities=17% Similarity=0.316 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhc-cCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCc-cCCceEEE
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQS-IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE-FKGKKIRC 175 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~-~~g~~l~v 175 (409)
+...++|||+|||+++|+++|+++|++ ||.|..|+|+.+. +|.++|||||+|.+.++|.+|++.|++.. |.|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456789999999999999999999999 9999999999998 89999999999999999999999999999 99999999
Q ss_pred eecccc
Q 015292 176 STSQAK 181 (409)
Q Consensus 176 ~~~~~~ 181 (409)
.++.++
T Consensus 85 ~~a~~~ 90 (104)
T 2dhg_A 85 SVAIPK 90 (104)
T ss_dssp CBCCCC
T ss_pred EEccCC
Confidence 998754
No 173
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.76 E-value=4.3e-18 Score=135.79 Aligned_cols=82 Identities=27% Similarity=0.424 Sum_probs=76.7
Q ss_pred CCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015292 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (409)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~ 350 (409)
...+.++|||+|||+.+++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556899999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred ec
Q 015292 351 LA 352 (409)
Q Consensus 351 ~a 352 (409)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 174
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.76 E-value=1.7e-18 Score=134.97 Aligned_cols=83 Identities=20% Similarity=0.344 Sum_probs=77.5
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
..++|||+|||+.+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999999999999999888888999999999999999999 799999999999999998
Q ss_pred CCCc
Q 015292 354 PQAD 357 (409)
Q Consensus 354 ~~~~ 357 (409)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 175
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=129.83 Aligned_cols=81 Identities=25% Similarity=0.416 Sum_probs=73.6
Q ss_pred cceEEEEcCCCCCC------CHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCe-E
Q 015292 274 QVKAVYVKNLPRNV------TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ-A 346 (409)
Q Consensus 274 ~~~~l~V~nLp~~~------t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~-~ 346 (409)
..++|||+|||+.+ ++++|+.+|++||.|..|.|+ +.++.++|||||+|.+.++|.+|+..|||..|.|+ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 35799999999999 789999999999999999998 34556799999999999999999999999999998 9
Q ss_pred EEEEecCCCC
Q 015292 347 LECSLAKPQA 356 (409)
Q Consensus 347 l~v~~a~~~~ 356 (409)
|+|.++....
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999998653
No 176
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=1.3e-18 Score=134.41 Aligned_cols=81 Identities=26% Similarity=0.473 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
....++|||+|||+++++++|+++|++||.|..|+|++++.+|.++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44578999999999999999999999999999999999988999999999999999999999999999999999999987
Q ss_pred c
Q 015292 178 S 178 (409)
Q Consensus 178 ~ 178 (409)
+
T Consensus 117 a 117 (118)
T 2khc_A 117 K 117 (118)
T ss_dssp C
T ss_pred c
Confidence 6
No 177
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=2.5e-18 Score=120.84 Aligned_cols=75 Identities=21% Similarity=0.268 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
..+..|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.|++|+|..+
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3568899999999999999999999999999999975 5999999999999999999999999999999999887
Q ss_pred c
Q 015292 179 Q 179 (409)
Q Consensus 179 ~ 179 (409)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 3
No 178
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.76 E-value=8.1e-19 Score=123.69 Aligned_cols=75 Identities=23% Similarity=0.628 Sum_probs=72.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 103 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
+|||+|||+++++++|+++|++||+|..|+++.++.+|.++|||||+|.+.++|.+|++ +++..|.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998899999999999999999999997 9999999999999864
No 179
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=125.47 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=74.7
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
...++|||+|||+++++++|+++|+.| .|..|+|+++ .++.++|||||+|.+.++|.+|+. ||+..|.|+.|.|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 345899999999999999999999999 9999999999 555668999999999999999999 9999999999999999
Q ss_pred CCCC
Q 015292 353 KPQA 356 (409)
Q Consensus 353 ~~~~ 356 (409)
+++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8763
No 180
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=126.46 Aligned_cols=81 Identities=20% Similarity=0.443 Sum_probs=76.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCC-ceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE-NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~-~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
..++|||+|||+++|+++|+++|++||.|..|+|+.+..++. ++|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999877665 8999999999999999999999999999999999988
Q ss_pred cc
Q 015292 179 QA 180 (409)
Q Consensus 179 ~~ 180 (409)
.+
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 181
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=2.5e-18 Score=129.23 Aligned_cols=82 Identities=20% Similarity=0.506 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++++++|+++|++|| |..|+|++++.+|+++|||||+|.+.++|.+|+ .|++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 44578999999999999999999999997 999999999999999999999999999999999 8999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.+.
T Consensus 90 a~~~ 93 (103)
T 2dng_A 90 AEGR 93 (103)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 8754
No 182
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.2e-18 Score=128.82 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=74.5
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
....+|||+|||+++++++|+++|+.| .|..|+|++++. +.++|||||+|.+.++|.+|| .||+..|+||.|.|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 345799999999999999999999999 899999999987 556999999999999999999 59999999999999998
Q ss_pred CCCCc
Q 015292 353 KPQAD 357 (409)
Q Consensus 353 ~~~~~ 357 (409)
.+...
T Consensus 91 ~~~~~ 95 (109)
T 2dnn_A 91 TERQW 95 (109)
T ss_dssp CHHHH
T ss_pred Cccch
Confidence 76543
No 183
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=129.76 Aligned_cols=82 Identities=17% Similarity=0.293 Sum_probs=72.9
Q ss_pred CccceEEEEcCCCCC-CCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhC--CceecCeEEE
Q 015292 272 ASQVKAVYVKNLPRN-VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGQALE 348 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~--~~~~~g~~l~ 348 (409)
..++++|||+|||++ +++++|+++|++||.|.+|.|++. ||||||+|.+.++|.+|+..|| +..|.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345689999999998 999999999999999999999864 6999999999999999999886 4569999999
Q ss_pred EEecCCCCccC
Q 015292 349 CSLAKPQADQK 359 (409)
Q Consensus 349 v~~a~~~~~~~ 359 (409)
|.|++......
T Consensus 96 V~~a~~~~~~~ 106 (112)
T 1x4f_A 96 VDLSEKYKKLV 106 (112)
T ss_dssp EEEECSCSSSS
T ss_pred EEECccccccc
Confidence 99998766543
No 184
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.76 E-value=3.6e-19 Score=130.38 Aligned_cols=81 Identities=25% Similarity=0.476 Sum_probs=73.9
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCC
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 355 (409)
++|||+|||..+++++|+++|++||.|..|.|++++.++.++|||||+|.+.+ |.+|+..|||..|.|+.|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999988888999999999999 99999999999999999999999886
Q ss_pred Cc
Q 015292 356 AD 357 (409)
Q Consensus 356 ~~ 357 (409)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 185
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=132.19 Aligned_cols=85 Identities=26% Similarity=0.470 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCee--------EEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccC
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT--------EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~ 169 (409)
....++|||+|||+++|+++|+++|++||.|. .|+|+.++.+|+++|||||+|.+.++|.+|++.|++..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34578999999999999999999999999999 6999999889999999999999999999999999999999
Q ss_pred CceEEEeeccccc
Q 015292 170 GKKIRCSTSQAKY 182 (409)
Q Consensus 170 g~~l~v~~~~~~~ 182 (409)
|+.|+|.++.+..
T Consensus 92 g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 GSKLKVSLARKKP 104 (113)
T ss_dssp TEECEEECSSCCC
T ss_pred CCEEEEEECCCCC
Confidence 9999999987643
No 186
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=132.82 Aligned_cols=83 Identities=20% Similarity=0.388 Sum_probs=73.8
Q ss_pred ccceEEEEcCCCCCCCHHHHH----HHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015292 273 SQVKAVYVKNLPRNVTQDQLK----KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~ 348 (409)
.+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. ++.+||||||+|.+.++|.+|+..|||..|.|++|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 445899999999999999876 6999999999998865 334589999999999999999999999999999999
Q ss_pred EEecCCCCcc
Q 015292 349 CSLAKPQADQ 358 (409)
Q Consensus 349 v~~a~~~~~~ 358 (409)
|.||+++...
T Consensus 104 V~~a~~~~~~ 113 (127)
T 2a3j_A 104 ITFSETPQSQ 113 (127)
T ss_dssp EEECCCCCHH
T ss_pred EEEccCcchh
Confidence 9999986553
No 187
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-17 Score=124.29 Aligned_cols=79 Identities=34% Similarity=0.547 Sum_probs=72.6
Q ss_pred CCccceEEEEcCCCCCCCHHHHHHHHhhc--CceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015292 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (409)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~ 348 (409)
...+.++|||+|||+.+++++|+++|++| |.|..|.+. +|||||+|.+.++|.+|+..|||..|.|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34456899999999999999999999999 999999885 58999999999999999999999999999999
Q ss_pred EEecCCCCc
Q 015292 349 CSLAKPQAD 357 (409)
Q Consensus 349 v~~a~~~~~ 357 (409)
|.+++++..
T Consensus 83 v~~a~~~~~ 91 (99)
T 2cpd_A 83 VTLAKPVDK 91 (99)
T ss_dssp EECCCCCCC
T ss_pred EEECCCCCC
Confidence 999988654
No 188
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=6e-18 Score=123.73 Aligned_cols=77 Identities=23% Similarity=0.426 Sum_probs=71.7
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
.+.++|||+|||+.+++++|+++|++||.|..|.|++ +||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 3458999999999999999999999999999999983 69999999999999999999999999999999999
Q ss_pred CCCCc
Q 015292 353 KPQAD 357 (409)
Q Consensus 353 ~~~~~ 357 (409)
++...
T Consensus 79 ~~~~~ 83 (90)
T 2dnp_A 79 TKGQK 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88644
No 189
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=6.5e-19 Score=124.94 Aligned_cols=76 Identities=22% Similarity=0.428 Sum_probs=72.7
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
++|||+|||+++++++|+++|++||.|..+.|++++.++.++|||||+|.+.++|.+|+..++ ..|+|++|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 369999999999999999999999999999999998888889999999999999999999999 9999999999987
No 190
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.76 E-value=6e-18 Score=128.73 Aligned_cols=77 Identities=23% Similarity=0.386 Sum_probs=71.3
Q ss_pred ccceEEEEcCCCCC-CCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 273 SQVKAVYVKNLPRN-VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 273 ~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
...++|||+|||+. +++++|+++|++||.|..|.| ++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34589999999999 999999999999999999999 369999999999999999999999999999999999
Q ss_pred cCCCCc
Q 015292 352 AKPQAD 357 (409)
Q Consensus 352 a~~~~~ 357 (409)
+++...
T Consensus 97 a~~~~~ 102 (110)
T 1wf1_A 97 AGEPKP 102 (110)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 986544
No 191
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=130.97 Aligned_cols=84 Identities=21% Similarity=0.498 Sum_probs=78.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+.. ++..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999987 99999999999999
Q ss_pred ccccc
Q 015292 178 SQAKY 182 (409)
Q Consensus 178 ~~~~~ 182 (409)
+.++.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 87543
No 192
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=2.1e-18 Score=130.75 Aligned_cols=85 Identities=25% Similarity=0.505 Sum_probs=74.9
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 015292 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (409)
Q Consensus 96 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 175 (409)
..+...++|||+|||+++|+++|+++|+.||.|..|+|++++.+|.++|||||+|.+.++|.+|+..+ +..|.|+.|.|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 44556799999999999999999999999999999999999999999999999999999999999865 58999999999
Q ss_pred eecccc
Q 015292 176 STSQAK 181 (409)
Q Consensus 176 ~~~~~~ 181 (409)
.++.++
T Consensus 99 ~~a~~~ 104 (109)
T 2rs2_A 99 KVAFPR 104 (109)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 988754
No 193
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-18 Score=130.24 Aligned_cols=81 Identities=28% Similarity=0.625 Sum_probs=77.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeeccc
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 180 (409)
.++|||+|||+++++++|+++|++||.|..|+|+.++.+|.++|||||+|.+.++|.+|++.|++..|.|+.|.|.++.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999999875
Q ss_pred c
Q 015292 181 K 181 (409)
Q Consensus 181 ~ 181 (409)
.
T Consensus 88 ~ 88 (104)
T 1p1t_A 88 E 88 (104)
T ss_dssp T
T ss_pred c
Confidence 4
No 194
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.4e-18 Score=126.85 Aligned_cols=80 Identities=28% Similarity=0.479 Sum_probs=74.2
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
..+.++|||+|||+.+++++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|+..|||..|.|++|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 345589999999999999999999999999999999865 59999999999999999999999999999999999
Q ss_pred cCCCCc
Q 015292 352 AKPQAD 357 (409)
Q Consensus 352 a~~~~~ 357 (409)
++++..
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 988654
No 195
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=4.1e-18 Score=125.26 Aligned_cols=82 Identities=21% Similarity=0.372 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
....++|||+|||+++++++|+++|++||.|..|+|+++ +|.++|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346789999999999999999999999999999999984 689999999999999999999999999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.+.
T Consensus 83 a~~~ 86 (92)
T 2dgv_A 83 DRNA 86 (92)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8754
No 196
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.9e-18 Score=127.97 Aligned_cols=84 Identities=25% Similarity=0.428 Sum_probs=75.1
Q ss_pred CCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015292 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (409)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~ 350 (409)
...+.++|||+|||+.+++++|+++|+.|+ .|.++.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 344568999999999999999999999884 67777777777779999999999999999999999999999999999
Q ss_pred ecCCCCc
Q 015292 351 LAKPQAD 357 (409)
Q Consensus 351 ~a~~~~~ 357 (409)
|++++..
T Consensus 88 ~a~~~~~ 94 (102)
T 2fc8_A 88 WAKPKGE 94 (102)
T ss_dssp ECCCCCS
T ss_pred EecCCCC
Confidence 9998654
No 197
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-18 Score=134.17 Aligned_cols=88 Identities=23% Similarity=0.308 Sum_probs=74.1
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
..+.++|||+|||+.+++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34568999999999999999999999999994333322222555689999999999999999999999999999999999
Q ss_pred cCCCCccC
Q 015292 352 AKPQADQK 359 (409)
Q Consensus 352 a~~~~~~~ 359 (409)
++++....
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpx_A 102 GKNKKQRS 109 (115)
T ss_dssp CCCCSCCC
T ss_pred ccCCCCCC
Confidence 99876543
No 198
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=129.72 Aligned_cols=84 Identities=27% Similarity=0.437 Sum_probs=77.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecccc
Q 015292 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (409)
Q Consensus 102 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 181 (409)
++|||+|||+++|+++|+++|++||.|..|+++.+ ++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999886 6899999999999999999999999999999999998643
Q ss_pred ----------------cccccCCCC
Q 015292 182 ----------------YRLFIGNIP 190 (409)
Q Consensus 182 ----------------~~l~v~~l~ 190 (409)
..|||++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 467888775
No 199
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-18 Score=128.77 Aligned_cols=81 Identities=22% Similarity=0.218 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCC--ccCCceEEE
Q 015292 99 PHGSEVYIGGIPH-DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT--EFKGKKIRC 175 (409)
Q Consensus 99 ~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~--~~~g~~l~v 175 (409)
.++++|||+|||+ ++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.|++. .|.|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4578999999999 9999999999999999999999875 689999999999999999988864 599999999
Q ss_pred eecccccccc
Q 015292 176 STSQAKYRLF 185 (409)
Q Consensus 176 ~~~~~~~~l~ 185 (409)
.++.....+.
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 1x4d_A 87 HLSQKYKRIK 96 (102)
T ss_dssp EEECCCTTSS
T ss_pred EECCCCCCCC
Confidence 9998765543
No 200
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-18 Score=129.39 Aligned_cols=83 Identities=18% Similarity=0.276 Sum_probs=77.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
....++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999999998999888999999999999999999999999999999999999998
Q ss_pred ccc
Q 015292 178 SQA 180 (409)
Q Consensus 178 ~~~ 180 (409)
+..
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 764
No 201
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.2e-18 Score=131.61 Aligned_cols=82 Identities=20% Similarity=0.500 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
....++|||+|||+++|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..+++ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred ccc
Q 015292 178 SQA 180 (409)
Q Consensus 178 ~~~ 180 (409)
+..
T Consensus 93 a~~ 95 (116)
T 2cqd_A 93 AYL 95 (116)
T ss_dssp STT
T ss_pred ccc
Confidence 864
No 202
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.75 E-value=3.6e-18 Score=133.52 Aligned_cols=84 Identities=20% Similarity=0.415 Sum_probs=79.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.+.
T Consensus 99 a~~~ 102 (126)
T 3ex7_B 99 CFVR 102 (126)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8754
No 203
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.75 E-value=4.1e-18 Score=135.61 Aligned_cols=84 Identities=23% Similarity=0.449 Sum_probs=79.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++|+++|+++|+.||.|..|+|++++.+|.++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.+.
T Consensus 119 a~~~ 122 (139)
T 1u6f_A 119 AASG 122 (139)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8754
No 204
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.8e-18 Score=125.32 Aligned_cols=79 Identities=16% Similarity=0.317 Sum_probs=73.2
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceec--CeEEEEE
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD--GQALECS 350 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~--g~~l~v~ 350 (409)
.+.++|||+|||+.+++++|+++|++||.|..|.|..+ +|||||+|.+.++|.+|+..||+..|. |++|+|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 34589999999999999999999999999999999875 589999999999999999999999999 9999999
Q ss_pred ecCCCCc
Q 015292 351 LAKPQAD 357 (409)
Q Consensus 351 ~a~~~~~ 357 (409)
|++++..
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9998643
No 205
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.9e-18 Score=129.13 Aligned_cols=81 Identities=21% Similarity=0.518 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCC-CCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS-SENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
...++|||+|||+++|+++|+++|++|| |..|+|+.++.+ |+++|||||+|.+.++|.+|+ .|++..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 999999999887 999999999999999999999 8999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.++
T Consensus 91 a~~~ 94 (104)
T 1wi8_A 91 ADQA 94 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8764
No 206
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=9.4e-19 Score=124.11 Aligned_cols=76 Identities=26% Similarity=0.531 Sum_probs=73.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 102 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
++|||+|||+++++++|+++|++||+|..|++++++.+|.++|||||+|.+.++|.+|++.++ ..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 589999999999999999999999999999999999899999999999999999999999888 9999999999875
No 207
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.9e-18 Score=126.51 Aligned_cols=83 Identities=30% Similarity=0.507 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe
Q 015292 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (409)
Q Consensus 97 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 176 (409)
.+...++|||+|||+++|+++|+++|++||.|..|+|+.+.. .++|||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345679999999999999999999999999999999998864 389999999999999999999999999999999999
Q ss_pred ecccc
Q 015292 177 TSQAK 181 (409)
Q Consensus 177 ~~~~~ 181 (409)
++.++
T Consensus 89 ~a~~~ 93 (103)
T 2cq3_A 89 NATAR 93 (103)
T ss_dssp ECCSS
T ss_pred EcccC
Confidence 98764
No 208
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=8.8e-19 Score=131.27 Aligned_cols=84 Identities=15% Similarity=0.189 Sum_probs=76.1
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
...++|||+|||+++++++|+++|+.||.|.. .++.+..++.++|||||+|.+.++|.+|+. |||..|.|+.|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 34589999999999999999999999999988 777777667779999999999999999999 9999999999999999
Q ss_pred CCCCcc
Q 015292 353 KPQADQ 358 (409)
Q Consensus 353 ~~~~~~ 358 (409)
+++...
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 886543
No 209
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=7.9e-18 Score=131.05 Aligned_cols=84 Identities=15% Similarity=0.295 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++++++|+++|++||.|..|+|+.+. +|.++|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccccc
Q 015292 178 SQAKY 182 (409)
Q Consensus 178 ~~~~~ 182 (409)
+....
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 87643
No 210
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.75 E-value=7.3e-18 Score=136.88 Aligned_cols=85 Identities=19% Similarity=0.336 Sum_probs=80.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe
Q 015292 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (409)
Q Consensus 97 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 176 (409)
.....++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||..|++..|.|+.|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccc
Q 015292 177 TSQAK 181 (409)
Q Consensus 177 ~~~~~ 181 (409)
++.+.
T Consensus 115 ~a~~~ 119 (156)
T 1h2v_Z 115 WDAGF 119 (156)
T ss_dssp EESCC
T ss_pred ECCCC
Confidence 98753
No 211
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.3e-18 Score=126.39 Aligned_cols=82 Identities=18% Similarity=0.386 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
....++|||+|||+++++++|+++|++||.|..|+|+.+.. .++|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 34579999999999999999999999999999999999854 3689999999999999999999999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.+.
T Consensus 90 a~~~ 93 (103)
T 2cqi_A 90 ATTP 93 (103)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 8754
No 212
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6.7e-18 Score=123.80 Aligned_cols=81 Identities=21% Similarity=0.414 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++|+++|+++|+.| .|..|+|+++ .+|+++|||||+|.+.++|.+|+. +++..|.|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4567899999999999999999999999 9999999999 779999999999999999999998 999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.++
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 8754
No 213
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.75 E-value=9.2e-18 Score=124.30 Aligned_cols=77 Identities=23% Similarity=0.448 Sum_probs=71.1
Q ss_pred CCccceEEEEcCCCC-CCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015292 271 GASQVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (409)
Q Consensus 271 ~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v 349 (409)
...+.++|||+|||+ .+++++|+++|++||.|..|+|. +|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344568999999998 99999999999999999999994 699999999999999999999999999999999
Q ss_pred EecCCC
Q 015292 350 SLAKPQ 355 (409)
Q Consensus 350 ~~a~~~ 355 (409)
.+++++
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 999875
No 214
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=5.6e-19 Score=138.81 Aligned_cols=81 Identities=16% Similarity=0.243 Sum_probs=73.7
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
...++|||+|||+++|+++|+++|++|| |..|+|++++. +.++|||||+|.+.++|.+|| .+|+..|.||.|.|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 3457999999999999999999999999 77999999987 666999999999999999999 78999999999999998
Q ss_pred CCCC
Q 015292 353 KPQA 356 (409)
Q Consensus 353 ~~~~ 356 (409)
.+..
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8654
No 215
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.8e-18 Score=124.93 Aligned_cols=80 Identities=24% Similarity=0.289 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 015292 99 PHGSEVYIGGIPHDASEHDLR----DFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 174 (409)
.+.++|||+|||+++++++|+ ++|++||.|.+|+|+.++.+ +|||||+|.+.++|.+|++.||+..|.|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456899999999999999999 99999999999999998764 88999999999999999999999999999999
Q ss_pred Eeecccc
Q 015292 175 CSTSQAK 181 (409)
Q Consensus 175 v~~~~~~ 181 (409)
|.++.+.
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 9998754
No 216
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.75 E-value=1.7e-18 Score=129.31 Aligned_cols=82 Identities=20% Similarity=0.512 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCC-CCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGK-DSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 176 (409)
+...++|||+|||+++++++|+++|++|| |.+|+|+.++ .+|+++|||||+|.+.++|.+|+ .|++..|.|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45679999999999999999999999999 9999999998 58999999999999999999999 899999999999999
Q ss_pred ecccc
Q 015292 177 TSQAK 181 (409)
Q Consensus 177 ~~~~~ 181 (409)
++.++
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 88754
No 217
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.75 E-value=5e-18 Score=128.29 Aligned_cols=80 Identities=28% Similarity=0.461 Sum_probs=72.5
Q ss_pred CCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015292 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (409)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v 349 (409)
......++|||+|||+.+++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 344556899999999999999999999999999999998 499999999999999999999999999999999
Q ss_pred EecCCCCc
Q 015292 350 SLAKPQAD 357 (409)
Q Consensus 350 ~~a~~~~~ 357 (409)
.|+++...
T Consensus 98 ~~a~~~~~ 105 (108)
T 2jvo_A 98 VYSKLPAK 105 (108)
T ss_dssp ESCSCCC-
T ss_pred EEecCCCC
Confidence 99988654
No 218
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=128.18 Aligned_cols=82 Identities=20% Similarity=0.314 Sum_probs=77.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
....++|||+|||+++++++|+++|++||.|..|+|+.++ +|.++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3457899999999999999999999999999999999997 499999999999999999999999999999999999998
Q ss_pred ccc
Q 015292 178 SQA 180 (409)
Q Consensus 178 ~~~ 180 (409)
+..
T Consensus 91 a~~ 93 (114)
T 2do0_A 91 DER 93 (114)
T ss_dssp CSC
T ss_pred ccc
Confidence 864
No 219
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.7e-18 Score=127.14 Aligned_cols=78 Identities=23% Similarity=0.417 Sum_probs=71.4
Q ss_pred ccceEEEEcCCCC-CCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 273 SQVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 273 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
.+.++|||+|||+ .+++++|+++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..|.|++|+|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4458999999998 99999999999999999999994 59999999999999999999999999999999999
Q ss_pred cCCCCcc
Q 015292 352 AKPQADQ 358 (409)
Q Consensus 352 a~~~~~~ 358 (409)
+++....
T Consensus 80 a~~~~~~ 86 (96)
T 2kvi_A 80 SSSNARP 86 (96)
T ss_dssp EECCCC-
T ss_pred cCcCCCC
Confidence 9876543
No 220
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=2.4e-18 Score=134.74 Aligned_cols=82 Identities=18% Similarity=0.271 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCC---eeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGE---VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~---v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 174 (409)
+...++|||+|||+++|+++|+++|++||. |..|+|++++. |+++|||||+|.+.++|.+||+ +++..|.||.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 445789999999999999999999999999 89999999987 9999999999999999999998 999999999999
Q ss_pred Eeecccc
Q 015292 175 CSTSQAK 181 (409)
Q Consensus 175 v~~~~~~ 181 (409)
|.++...
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 9987643
No 221
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.9e-18 Score=128.07 Aligned_cols=81 Identities=22% Similarity=0.308 Sum_probs=74.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe
Q 015292 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (409)
Q Consensus 97 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 176 (409)
.+...++|||+|||+++|+++|+++|++||.| .|+|+.++ +|+++|||||+|.+.++|.+|| .+++..|.||.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 35567899999999999999999999999955 99999997 7999999999999999999999 479999999999998
Q ss_pred eccc
Q 015292 177 TSQA 180 (409)
Q Consensus 177 ~~~~ 180 (409)
.+..
T Consensus 88 ~~~~ 91 (102)
T 1wez_A 88 LNST 91 (102)
T ss_dssp EECC
T ss_pred ECCC
Confidence 8764
No 222
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=125.29 Aligned_cols=83 Identities=27% Similarity=0.518 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
....++|||+|||+++++++|+++|++||.|..|+|+.++.+|.++|||||+|.+.++|.+|+. ++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3457899999999999999999999999999999999999999999999999999999999997 57789999999999
Q ss_pred ccccc
Q 015292 178 SQAKY 182 (409)
Q Consensus 178 ~~~~~ 182 (409)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2cqg_A 90 PNSKQ 94 (103)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 87643
No 223
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.3e-18 Score=126.45 Aligned_cols=85 Identities=29% Similarity=0.498 Sum_probs=78.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
....++|||+|||+++|+++|+++|++||.|..|++.++ +|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 456789999999999999999999999999999999854 78999999999999999999999999999999999
Q ss_pred cccccccccCC
Q 015292 178 SQAKYRLFIGN 188 (409)
Q Consensus 178 ~~~~~~l~v~~ 188 (409)
+.+...+++++
T Consensus 86 a~~~~~~~~g~ 96 (99)
T 2cpj_A 86 ACHSASLTSGP 96 (99)
T ss_dssp SSCCSCCCCCC
T ss_pred cCCCCCCCCCC
Confidence 99888777764
No 224
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3e-18 Score=131.36 Aligned_cols=80 Identities=30% Similarity=0.498 Sum_probs=76.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeeccc
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 180 (409)
.++|||+|||+++++++|+++|++||.|..|+|+.++.+|.++|||||+|.+.++|.+|+ .|++..|.|+.|.|.++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 489999999999999999999999999999999999999999999999999999999999 9999999999999999865
Q ss_pred c
Q 015292 181 K 181 (409)
Q Consensus 181 ~ 181 (409)
.
T Consensus 104 ~ 104 (114)
T 2cq4_A 104 E 104 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 225
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.7e-18 Score=124.74 Aligned_cols=78 Identities=26% Similarity=0.446 Sum_probs=69.8
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCc-eeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCC-ceecCeEEEEE
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK-YELDGQALECS 350 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~-~~~~g~~l~v~ 350 (409)
...++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..||| ..|.|+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 34589999999999999999999999999 6666653 369999999999999999999999 99999999999
Q ss_pred ecCCCCc
Q 015292 351 LAKPQAD 357 (409)
Q Consensus 351 ~a~~~~~ 357 (409)
+++++..
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9988654
No 226
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.5e-18 Score=127.40 Aligned_cols=82 Identities=22% Similarity=0.332 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeE-EEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTE-VRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~-v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 176 (409)
+...++|||+|||+++|+++|+++|++||.|.. |+|+.+ .+|+++|||||+|.+.++|.+||.. ++..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345789999999999999999999999999987 888888 7799999999999999999999986 9999999999998
Q ss_pred ecccc
Q 015292 177 TSQAK 181 (409)
Q Consensus 177 ~~~~~ 181 (409)
++...
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 87654
No 227
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-18 Score=124.01 Aligned_cols=73 Identities=26% Similarity=0.491 Sum_probs=66.7
Q ss_pred eEEEEcCCCCCC------CHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCe-EEE
Q 015292 276 KAVYVKNLPRNV------TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ-ALE 348 (409)
Q Consensus 276 ~~l~V~nLp~~~------t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~-~l~ 348 (409)
++|||+|||+.+ ++++|+++|++||.|..|.|+ +.++.++|||||+|.+.++|.+|+..|||..|.|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 679999999999999999988 34556689999999999999999999999999999 887
Q ss_pred EE
Q 015292 349 CS 350 (409)
Q Consensus 349 v~ 350 (409)
|+
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 63
No 228
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.74 E-value=1.1e-18 Score=134.21 Aligned_cols=81 Identities=12% Similarity=0.196 Sum_probs=75.4
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCc---eeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGR---ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~---v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~ 350 (409)
..++|||+|||+++|+++|+++|+.||. |..|+|++++. +.++|||||+|.+.++|.+||. ||+..|+|+.|+|.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 4589999999999999999999999999 89999999988 5569999999999999999999 99999999999999
Q ss_pred ecCCCC
Q 015292 351 LAKPQA 356 (409)
Q Consensus 351 ~a~~~~ 356 (409)
++.+..
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997654
No 229
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.5e-18 Score=128.85 Aligned_cols=82 Identities=13% Similarity=0.357 Sum_probs=75.9
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCcee--------cC
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL--------DG 344 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~--------~g 344 (409)
...++|||+|||+.+++++|+++|+.||.|..|+|++++ ++.++|||||+|.+.++|.+|+..|||..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 345899999999999999999999999999999999998 666699999999999999999999999999 58
Q ss_pred eEEEEEecCCC
Q 015292 345 QALECSLAKPQ 355 (409)
Q Consensus 345 ~~l~v~~a~~~ 355 (409)
++|.|.|+.+.
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999865
No 230
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=2e-18 Score=121.68 Aligned_cols=75 Identities=15% Similarity=0.361 Sum_probs=71.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 277 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
+|||+|||+++++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|+.. ++..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999988888899999999999999999995 889999999999876
No 231
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.5e-18 Score=129.02 Aligned_cols=86 Identities=21% Similarity=0.363 Sum_probs=78.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH---HHHhccCCeeEEEEeeCCCCC---CceeeEEEEecCHHHHHHHHHHhCCCccCCc
Q 015292 98 PPHGSEVYIGGIPHDASEHDLR---DFCQSIGEVTEVRIMKGKDSS---ENKGFAFVTFRNVELASKAIDKLNNTEFKGK 171 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~g---~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~ 171 (409)
....++|||+|||+++++++|+ ++|++||.|..|+|+++..++ +++|||||+|.+.++|.+|++.||+..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3457899999999999999999 999999999999999887644 5669999999999999999999999999999
Q ss_pred eEEEeecccccc
Q 015292 172 KIRCSTSQAKYR 183 (409)
Q Consensus 172 ~l~v~~~~~~~~ 183 (409)
.|+|.++.++..
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999987654
No 232
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.74 E-value=2.7e-18 Score=134.92 Aligned_cols=83 Identities=17% Similarity=0.336 Sum_probs=78.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeE--EEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCC----ccCCce
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTE--VRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT----EFKGKK 172 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~--v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~----~~~g~~ 172 (409)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+|+++|||||+|.+. +|.+|+..|++. .|.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 34689999999999999999999999999977 99999999999999999999999 999999999999 999999
Q ss_pred EEEeeccccc
Q 015292 173 IRCSTSQAKY 182 (409)
Q Consensus 173 l~v~~~~~~~ 182 (409)
|.|.++.+..
T Consensus 100 l~V~~a~~~~ 109 (131)
T 2m2b_A 100 INVEFAKGSK 109 (131)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999987653
No 233
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=126.92 Aligned_cols=81 Identities=20% Similarity=0.441 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++|+++|+++|++||.|..|+|..+ +.++|||||+|.+.++|.+|++.|++..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 446789999999999999999999999999999999765 56899999999999999999999999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.+.
T Consensus 96 a~~~ 99 (109)
T 1x4a_A 96 PRSG 99 (109)
T ss_dssp CCCC
T ss_pred cccC
Confidence 8754
No 234
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.2e-18 Score=121.67 Aligned_cols=75 Identities=24% Similarity=0.467 Sum_probs=70.4
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHh-CCceecCeEEEEEe
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT-EKYELDGQALECSL 351 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l-~~~~~~g~~l~v~~ 351 (409)
...++|||+|||..+++++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|+..| ++..|.|++|+|.|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 44589999999999999999999999999999999974 699999999999999999998 99999999999999
Q ss_pred cC
Q 015292 352 AK 353 (409)
Q Consensus 352 a~ 353 (409)
|+
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 235
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.1e-18 Score=128.57 Aligned_cols=85 Identities=25% Similarity=0.432 Sum_probs=78.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCC-eeEEEEe-eCCCCCCceeeEEEEecCHHHHHHHHHHhC--CCccCCceE
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGE-VTEVRIM-KGKDSSENKGFAFVTFRNVELASKAIDKLN--NTEFKGKKI 173 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~-v~~v~i~-~~~~~g~~~g~afV~F~~~~~A~~a~~~l~--~~~~~g~~l 173 (409)
..+.++|||+|||+++|+++|+++|++||. |..|.++ .+..+|.++|||||+|.+.++|.+|+..|+ +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 446789999999999999999999999998 9999998 788889999999999999999999999996 589999999
Q ss_pred EEeeccccc
Q 015292 174 RCSTSQAKY 182 (409)
Q Consensus 174 ~v~~~~~~~ 182 (409)
.|.++.+..
T Consensus 85 ~V~~a~~~~ 93 (109)
T 2dis_A 85 AVDWAEPEI 93 (109)
T ss_dssp EEEESCSSC
T ss_pred EEEEcCCCC
Confidence 999998654
No 236
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=2.1e-18 Score=135.07 Aligned_cols=81 Identities=12% Similarity=0.181 Sum_probs=75.3
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCc---eeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGR---ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~---v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~ 350 (409)
..++|||+|||+++|+++|+++|++||. |..|+|++++. +.++|||||+|.+.++|.+||. ||+..|+||.|+|.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 4589999999999999999999999999 88999999988 6669999999999999999999 99999999999999
Q ss_pred ecCCCC
Q 015292 351 LAKPQA 356 (409)
Q Consensus 351 ~a~~~~ 356 (409)
++.+..
T Consensus 121 ~a~~~e 126 (136)
T 2hgl_A 121 KSHRTE 126 (136)
T ss_dssp ECCHHH
T ss_pred ECChHH
Confidence 997654
No 237
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=1.4e-19 Score=139.31 Aligned_cols=84 Identities=23% Similarity=0.339 Sum_probs=78.6
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeE--------EeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCe
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITK--------VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ 345 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--------v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~ 345 (409)
+.++|||+|||+.+++++|+++|++||.|.. |+|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4489999999999999999999999999998 99999988777899999999999999999999999999999
Q ss_pred EEEEEecCCCCc
Q 015292 346 ALECSLAKPQAD 357 (409)
Q Consensus 346 ~l~v~~a~~~~~ 357 (409)
+|+|.+++++..
T Consensus 86 ~l~V~~a~~~~~ 97 (116)
T 2lcw_A 86 PIKVSFATRRAD 97 (116)
Confidence 999999987644
No 238
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.5e-18 Score=131.60 Aligned_cols=82 Identities=18% Similarity=0.258 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCe-eEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEV-TEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v-~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 176 (409)
+...++|||+|||+++|+++|+++|+.||.| ..|+|+.++ +|+++|||||+|.+.++|.+||.. ++..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4567999999999999999999999999999 899999998 899999999999999999999975 9999999999999
Q ss_pred ecccc
Q 015292 177 TSQAK 181 (409)
Q Consensus 177 ~~~~~ 181 (409)
++.+.
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98754
No 239
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.6e-18 Score=128.21 Aligned_cols=79 Identities=23% Similarity=0.347 Sum_probs=72.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhC--CCccCCceEE
Q 015292 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN--NTEFKGKKIR 174 (409)
Q Consensus 97 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~--~~~~~g~~l~ 174 (409)
..+++++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.++ +..|.|++|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3456789999999999999999999999999999999875 7999999999999999999887 4689999999
Q ss_pred Eeecccc
Q 015292 175 CSTSQAK 181 (409)
Q Consensus 175 v~~~~~~ 181 (409)
|.++.++
T Consensus 101 V~~a~~k 107 (119)
T 2ad9_A 101 IQFSNHK 107 (119)
T ss_dssp EEECSSS
T ss_pred EEEccCC
Confidence 9998754
No 240
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=125.20 Aligned_cols=81 Identities=16% Similarity=0.269 Sum_probs=72.2
Q ss_pred ccceEEEE--cCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCcee-----cCe
Q 015292 273 SQVKAVYV--KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL-----DGQ 345 (409)
Q Consensus 273 ~~~~~l~V--~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~-----~g~ 345 (409)
.++++||| +||++++++++|+++|++||.|..|.|+.+ ||||||+|.+.++|.+|+..|||..| .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34578999 679999999999999999999999999764 69999999999999999999999988 689
Q ss_pred EEEEEecCCCCccC
Q 015292 346 ALECSLAKPQADQK 359 (409)
Q Consensus 346 ~l~v~~a~~~~~~~ 359 (409)
+|.|.|+.......
T Consensus 97 ~l~v~~a~~~p~~~ 110 (114)
T 2cq2_A 97 TLYLNFVEKVQWSG 110 (114)
T ss_dssp ECEEEEESCCCCSS
T ss_pred EEEEEecccCcccC
Confidence 99999998654433
No 241
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.74 E-value=3.9e-18 Score=131.19 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCC---eeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGE---VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~---v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 174 (409)
+...++|||+|||+++|+++|+++|+.||. |..|+|+.++. |+++|||||+|.+.++|.+||+ +++..|.|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345789999999999999999999999999 89999999987 9999999999999999999998 999999999999
Q ss_pred Eeeccc
Q 015292 175 CSTSQA 180 (409)
Q Consensus 175 v~~~~~ 180 (409)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 998764
No 242
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=2.3e-18 Score=123.21 Aligned_cols=73 Identities=14% Similarity=0.332 Sum_probs=68.1
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCc-eE
Q 015292 101 GSEVYIGGIPHDA------SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGK-KI 173 (409)
Q Consensus 101 ~~~l~v~nLp~~~------t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~-~l 173 (409)
+++|||+|||+.+ |+++|+++|++||.|.+|+|. +.+|+++|||||+|.+.++|.+|+..||+..|.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 779999999999999999987 35799999999999999999999999999999999 88
Q ss_pred EE
Q 015292 174 RC 175 (409)
Q Consensus 174 ~v 175 (409)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 243
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=8.9e-18 Score=124.66 Aligned_cols=79 Identities=25% Similarity=0.432 Sum_probs=71.2
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
...++|||+|||+.+++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3458999999999999999999999999997 666643 34799999999999999999999999999999999999
Q ss_pred CCCC
Q 015292 353 KPQA 356 (409)
Q Consensus 353 ~~~~ 356 (409)
+++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8864
No 244
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=1e-18 Score=127.91 Aligned_cols=80 Identities=29% Similarity=0.621 Sum_probs=74.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecccc
Q 015292 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (409)
Q Consensus 102 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 181 (409)
++|||+|||+++++++|+++|++||.|.+|++++++.+|.++|||||+|.+.+ |.+|+..|++..+.|+.|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999998764
Q ss_pred c
Q 015292 182 Y 182 (409)
Q Consensus 182 ~ 182 (409)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 245
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=127.14 Aligned_cols=77 Identities=21% Similarity=0.314 Sum_probs=71.7
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
..++|||+|||+.+++++|+++|++||.|..|.|++. +|||||+|.+.++|.+|+..|||..|.|++|+|.|++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG------GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS------SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3479999999999999999999999999999999863 6999999999999999999999999999999999998
Q ss_pred CCC
Q 015292 354 PQA 356 (409)
Q Consensus 354 ~~~ 356 (409)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 643
No 246
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.73 E-value=9.2e-19 Score=132.39 Aligned_cols=82 Identities=11% Similarity=0.164 Sum_probs=76.0
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCc---eeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGR---ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v 349 (409)
...++|||+|||+++|+++|+++|+.||. |..|+|++++. +.++|||||+|.+.++|.+||. ||+..|+|+.|+|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 34589999999999999999999999998 89999999988 6669999999999999999999 9999999999999
Q ss_pred EecCCCC
Q 015292 350 SLAKPQA 356 (409)
Q Consensus 350 ~~a~~~~ 356 (409)
.++.+..
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9998754
No 247
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=5.3e-18 Score=127.70 Aligned_cols=79 Identities=13% Similarity=0.283 Sum_probs=73.7
Q ss_pred CCCeEEEcCCCCCC------CHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCc-e
Q 015292 100 HGSEVYIGGIPHDA------SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGK-K 172 (409)
Q Consensus 100 ~~~~l~v~nLp~~~------t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~-~ 172 (409)
..++|||+|||+.+ |+++|+.+|++||.|..|+|+ +.+|+++|||||+|.+.++|.+|+..|||..|.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46899999999999 789999999999999999988 36799999999999999999999999999999999 9
Q ss_pred EEEeeccc
Q 015292 173 IRCSTSQA 180 (409)
Q Consensus 173 l~v~~~~~ 180 (409)
|.|.++..
T Consensus 92 l~V~~a~~ 99 (105)
T 2nlw_A 92 FRVNLFTD 99 (105)
T ss_dssp EEEECSCC
T ss_pred EEEEEcch
Confidence 99998864
No 248
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.73 E-value=1.9e-17 Score=132.02 Aligned_cols=81 Identities=22% Similarity=0.273 Sum_probs=72.7
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecC--eEEEEE
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG--QALECS 350 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g--~~l~v~ 350 (409)
....+|||+||++.+|+++|+++|++||.|.+|.|+.++ ++|||||+|.+.++|.+|+..|||..|.| ++|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 345789999999999999999999999999999997543 36899999999999999999999999965 999999
Q ss_pred ecCCCCc
Q 015292 351 LAKPQAD 357 (409)
Q Consensus 351 ~a~~~~~ 357 (409)
|+++...
T Consensus 120 ~Ak~~~l 126 (164)
T 1sjr_A 120 FSKLTSL 126 (164)
T ss_dssp ECSSSSC
T ss_pred EecCCcc
Confidence 9998753
No 249
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.73 E-value=1.8e-17 Score=127.37 Aligned_cols=81 Identities=23% Similarity=0.316 Sum_probs=73.0
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcE-EEEEeCCHHHHHHHHHHhCCceecC--eEEEE
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRI-GFVHFAERSSAMKALKNTEKYELDG--QALEC 349 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~-afV~F~~~e~A~~A~~~l~~~~~~g--~~l~v 349 (409)
.+...|||+||++.+|+++|+++|++||.|.+|+|+... +|| |||+|.+.++|.+|+..|||..|.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 334688999999999999999999999999999998643 677 9999999999999999999999988 99999
Q ss_pred EecCCCCcc
Q 015292 350 SLAKPQADQ 358 (409)
Q Consensus 350 ~~a~~~~~~ 358 (409)
.|+++..-.
T Consensus 101 ~~ak~~~l~ 109 (130)
T 3zzy_A 101 DFSKLTSLN 109 (130)
T ss_dssp EECSCSSCC
T ss_pred EecCCCcee
Confidence 999987543
No 250
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=133.50 Aligned_cols=81 Identities=28% Similarity=0.558 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++|+++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 44679999999999999999999999999999999999989999999999999999999999999999999999999986
Q ss_pred c
Q 015292 178 S 178 (409)
Q Consensus 178 ~ 178 (409)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 4
No 251
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=4.4e-18 Score=127.72 Aligned_cols=84 Identities=20% Similarity=0.350 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhC--CCccCCceEE
Q 015292 98 PPHGSEVYIGGIPHD-ASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN--NTEFKGKKIR 174 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~--~~~~~g~~l~ 174 (409)
...+++|||+|||++ +|+++|+++|++||.|.+|+|++ ++|||||+|.+.++|.+|++.|+ +..|.|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 445789999999998 99999999999999999999975 38999999999999999999886 4569999999
Q ss_pred EeecccccccccC
Q 015292 175 CSTSQAKYRLFIG 187 (409)
Q Consensus 175 v~~~~~~~~l~v~ 187 (409)
|.++.....+..+
T Consensus 96 V~~a~~~~~~~~~ 108 (112)
T 1x4f_A 96 VDLSEKYKKLVSG 108 (112)
T ss_dssp EEEECSCSSSSCC
T ss_pred EEECccccccccC
Confidence 9999877666544
No 252
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=7.9e-18 Score=126.03 Aligned_cols=76 Identities=21% Similarity=0.406 Sum_probs=71.1
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
..++|||+|||..+++++|+++|+.||.|.+|+|++. +|||||+|.+.++|.+|+..|||..|.|+.|+|.|++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE------KGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 3489999999999999999999999999999999843 6999999999999999999999999999999999998
Q ss_pred CC
Q 015292 354 PQ 355 (409)
Q Consensus 354 ~~ 355 (409)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 253
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.7e-18 Score=127.69 Aligned_cols=83 Identities=30% Similarity=0.510 Sum_probs=76.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe
Q 015292 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (409)
Q Consensus 97 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 176 (409)
.....++|||+|||.++|+++|+++|++||.|..|+|+.+. +.++|||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567999999999999999999999999999999999885 4589999999999999999999999999999999999
Q ss_pred ecccc
Q 015292 177 TSQAK 181 (409)
Q Consensus 177 ~~~~~ 181 (409)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98754
No 254
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.73 E-value=6.8e-18 Score=125.42 Aligned_cols=82 Identities=27% Similarity=0.486 Sum_probs=74.2
Q ss_pred ccceEEEEcCCCCCCCHHHHH----HHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015292 273 SQVKAVYVKNLPRNVTQDQLK----KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~ 348 (409)
.++++|||+|||..+++++|+ ++|++||.|..|.|+. ++.++|||||+|.+.++|.+|+..|||..|.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 345899999999999999999 9999999999999974 234579999999999999999999999999999999
Q ss_pred EEecCCCCc
Q 015292 349 CSLAKPQAD 357 (409)
Q Consensus 349 v~~a~~~~~ 357 (409)
|.|+++...
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999998654
No 255
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.3e-18 Score=129.33 Aligned_cols=81 Identities=23% Similarity=0.515 Sum_probs=76.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeeccc
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 180 (409)
.++|||+|||+++|+++|+++|++||.|..|+|+.++.+|.++|||||+|.+.++|.+||.. ++..|.|+.|.|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 48999999999999999999999999999999999999999999999999999999999976 99999999999999876
Q ss_pred cc
Q 015292 181 KY 182 (409)
Q Consensus 181 ~~ 182 (409)
+.
T Consensus 106 ~~ 107 (116)
T 1x4b_A 106 RE 107 (116)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 256
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=123.07 Aligned_cols=77 Identities=21% Similarity=0.326 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHh--CCCccCCceEEEe
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL--NNTEFKGKKIRCS 176 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l--~~~~~~g~~l~v~ 176 (409)
+++++|||+|||+++|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|++.| ++..+.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 45789999999999999999999999999999998864 899999999999999999976 4677999999999
Q ss_pred ecccc
Q 015292 177 TSQAK 181 (409)
Q Consensus 177 ~~~~~ 181 (409)
++..+
T Consensus 87 ~a~~~ 91 (101)
T 2cq1_A 87 YSNHK 91 (101)
T ss_dssp ECSCS
T ss_pred EcCcc
Confidence 98754
No 257
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=128.68 Aligned_cols=81 Identities=20% Similarity=0.350 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 015292 99 PHGSEVYIGGIPHDASEHDLR----DFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 174 (409)
...++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|.+|+..|||..|.|+.|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 457899999999999999876 6999999999998864 478999999999999999999999999999999999
Q ss_pred Eeeccccc
Q 015292 175 CSTSQAKY 182 (409)
Q Consensus 175 v~~~~~~~ 182 (409)
|.++..+.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99987653
No 258
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=123.69 Aligned_cols=81 Identities=25% Similarity=0.421 Sum_probs=71.9
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
..+.++|||+|||+.+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456899999999999999999999999988766 33445689999999999999999999999999999999999
Q ss_pred cCCCCc
Q 015292 352 AKPQAD 357 (409)
Q Consensus 352 a~~~~~ 357 (409)
+.++..
T Consensus 88 a~~~~~ 93 (96)
T 1fjc_A 88 TGEKGG 93 (96)
T ss_dssp CSSSCC
T ss_pred cCCCCC
Confidence 988654
No 259
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.8e-18 Score=133.50 Aligned_cols=84 Identities=17% Similarity=0.248 Sum_probs=75.9
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
....++|||+|||+.+|+++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+||. ||+..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3445899999999999999999999999999986666666677779999999999999999999 999999999999999
Q ss_pred cCCCC
Q 015292 352 AKPQA 356 (409)
Q Consensus 352 a~~~~ 356 (409)
+.++.
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98754
No 260
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=7.5e-18 Score=126.78 Aligned_cols=78 Identities=26% Similarity=0.400 Sum_probs=73.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeeccc
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 180 (409)
.++|||+|||+++|+++|+++|+.| .|..|+|+.++. |+++|||||+|.+.++|.+|| .+++..|.||.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 899999999976 999999999999999999999 6999999999999988865
Q ss_pred c
Q 015292 181 K 181 (409)
Q Consensus 181 ~ 181 (409)
.
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 261
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.1e-17 Score=116.26 Aligned_cols=74 Identities=23% Similarity=0.374 Sum_probs=66.3
Q ss_pred eEEEEcCCCCCCCHHH----HHHHHhhc-CceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015292 276 KAVYVKNLPRNVTQDQ----LKKLFEHH-GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~----L~~~F~~~-G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~ 350 (409)
+.|||+|||+.+++++ |+++|++| |.|.+|. .|+|||.|.+.++|.+|++.|||..|.||+|+|+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 3499999999999987 55899999 5999982 2999999999999999999999999999999999
Q ss_pred ecCCCCccC
Q 015292 351 LAKPQADQK 359 (409)
Q Consensus 351 ~a~~~~~~~ 359 (409)
||+.+..--
T Consensus 80 ~A~~~sd~~ 88 (96)
T 2diu_A 80 FTPKNRELC 88 (96)
T ss_dssp SSCCSCCCC
T ss_pred ecCCCccee
Confidence 999877643
No 262
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.4e-17 Score=126.32 Aligned_cols=81 Identities=21% Similarity=0.456 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCcc--------CC
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF--------KG 170 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~--------~g 170 (409)
...++|||+|||+++|+++|+++|++||.|..|+|+.+. +|.++|||||+|.+.++|.+|+..||+..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 456899999999999999999999999999999999998 899999999999999999999999999999 57
Q ss_pred ceEEEeeccc
Q 015292 171 KKIRCSTSQA 180 (409)
Q Consensus 171 ~~l~v~~~~~ 180 (409)
++|.|.++.+
T Consensus 102 ~~l~v~~a~p 111 (114)
T 1x5o_A 102 EPLLCKFSGP 111 (114)
T ss_dssp SCBEEEECCC
T ss_pred CceeEEccCC
Confidence 7788888764
No 263
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.73 E-value=1.4e-17 Score=135.60 Aligned_cols=84 Identities=23% Similarity=0.409 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.+|.++|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.+.
T Consensus 147 a~~~ 150 (158)
T 2kn4_A 147 ARYG 150 (158)
T ss_dssp ECCS
T ss_pred CCCC
Confidence 8754
No 264
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=1.4e-17 Score=127.94 Aligned_cols=81 Identities=16% Similarity=0.331 Sum_probs=74.3
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
++++|||+|||+.+++++|+++|++||.|..|.|+.+.. ++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE---TRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT---TTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 348999999999999999999999999999999987643 37999999999999999999999999999999999998
Q ss_pred CCCc
Q 015292 354 PQAD 357 (409)
Q Consensus 354 ~~~~ 357 (409)
+...
T Consensus 84 ~~~~ 87 (115)
T 3lqv_A 84 ANRA 87 (115)
T ss_dssp HHHH
T ss_pred CChh
Confidence 7554
No 265
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.73 E-value=1.2e-17 Score=130.06 Aligned_cols=80 Identities=24% Similarity=0.502 Sum_probs=76.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeeccc
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 180 (409)
.++|||+|||+++|+++|+++|++||.|..|+|+.++.+|.++|||||+|.+.++|.+|+ .|++..|.|+.|.|.++.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 489999999999999999999999999999999999889999999999999999999999 7999999999999999875
Q ss_pred c
Q 015292 181 K 181 (409)
Q Consensus 181 ~ 181 (409)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 266
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=123.89 Aligned_cols=79 Identities=22% Similarity=0.249 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCC--ccCCceEEE
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT--EFKGKKIRC 175 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~--~~~g~~l~v 175 (409)
.++.++|||+|||+++++++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|++.|++. .|.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345789999999999999999999999999999999864 789999999999999999988654 599999999
Q ss_pred eeccccc
Q 015292 176 STSQAKY 182 (409)
Q Consensus 176 ~~~~~~~ 182 (409)
.++..+.
T Consensus 86 ~~a~~~~ 92 (104)
T 1wex_A 86 NYSTSKR 92 (104)
T ss_dssp EECSSSS
T ss_pred EEccCcc
Confidence 9987643
No 267
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=1e-17 Score=126.22 Aligned_cols=81 Identities=25% Similarity=0.420 Sum_probs=72.9
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhccC-CeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 015292 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (409)
Q Consensus 96 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 174 (409)
..|+..++|||+|||+++|+++|+++|++|| .|..+.|... .++|||||+|.+.++|.+|++.||+..|.|+.|.
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~ 98 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVIT 98 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3466778999999999999999999999999 8999998643 4799999999999999999999999999999999
Q ss_pred Eeeccc
Q 015292 175 CSTSQA 180 (409)
Q Consensus 175 v~~~~~ 180 (409)
|.++..
T Consensus 99 V~~a~~ 104 (111)
T 2jvr_A 99 VERDDN 104 (111)
T ss_dssp EEESCC
T ss_pred EEECCC
Confidence 998864
No 268
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=3.5e-18 Score=120.41 Aligned_cols=75 Identities=21% Similarity=0.520 Sum_probs=71.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 103 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
+|||+|||+++|+++|+++|++||+|..|+++.++.+|.++|||||+|.+.++|.+|++ +++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999997 5899999999999764
No 269
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.72 E-value=3.8e-18 Score=134.46 Aligned_cols=83 Identities=23% Similarity=0.422 Sum_probs=78.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
...++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred ccc
Q 015292 179 QAK 181 (409)
Q Consensus 179 ~~~ 181 (409)
.+.
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 270
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.2e-18 Score=133.17 Aligned_cols=83 Identities=22% Similarity=0.300 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++|+++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|.+||. +++..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4456899999999999999999999999999987777777789999999999999999999998 999999999999998
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+..+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8753
No 271
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.72 E-value=4.2e-18 Score=128.76 Aligned_cols=81 Identities=11% Similarity=0.190 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCC---eeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGE---VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~---v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 174 (409)
+...++|||+|||+++|+++|+++|+.||. |..|+|+.++. |+++|||||+|.+.++|.+||. +++..|.|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 446789999999999999999999999998 89999999987 9999999999999999999998 999999999999
Q ss_pred Eeeccc
Q 015292 175 CSTSQA 180 (409)
Q Consensus 175 v~~~~~ 180 (409)
|.++.+
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 998764
No 272
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4.6e-17 Score=120.80 Aligned_cols=78 Identities=17% Similarity=0.405 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccC--CceEEE
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK--GKKIRC 175 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~--g~~l~v 175 (409)
+...++|||+|||+++|+++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|++.||+..|. |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 456789999999999999999999999999999999754 789999999999999999999999999 999999
Q ss_pred eecccc
Q 015292 176 STSQAK 181 (409)
Q Consensus 176 ~~~~~~ 181 (409)
.++.++
T Consensus 88 ~~a~~~ 93 (97)
T 1why_A 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 998764
No 273
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.3e-17 Score=119.15 Aligned_cols=77 Identities=27% Similarity=0.533 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++|+++|+++|++||.|..|+|+ +|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567999999999999999999999999999999997 57999999999999999999999999999999999
Q ss_pred ccccc
Q 015292 178 SQAKY 182 (409)
Q Consensus 178 ~~~~~ 182 (409)
+.+..
T Consensus 77 a~~~~ 81 (90)
T 2dnq_A 77 SKNKS 81 (90)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87643
No 274
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-16 Score=118.11 Aligned_cols=78 Identities=21% Similarity=0.336 Sum_probs=70.6
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
.+.++|||+|| ++++++|+++|++||.|..|.|.. ++|||||+|.+.++|.+|+..|||..|.|++|+|.|+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 34589999996 899999999999999999999953 3699999999999999999999999999999999999
Q ss_pred CCCCcc
Q 015292 353 KPQADQ 358 (409)
Q Consensus 353 ~~~~~~ 358 (409)
+++...
T Consensus 85 ~~~~~~ 90 (97)
T 1x5p_A 85 RKQPML 90 (97)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 886543
No 275
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.5e-17 Score=122.50 Aligned_cols=79 Identities=32% Similarity=0.545 Sum_probs=72.8
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 015292 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (409)
Q Consensus 96 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 175 (409)
..+...++|||+|||.++++++|+++|++||.|.+|++.+ ++|||||+|.+.++|.+|+..|++..|.|+.|+|
T Consensus 22 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 95 (101)
T 2la4_A 22 SAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRT 95 (101)
T ss_dssp TSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCC
T ss_pred cCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3455679999999999999999999999999999999973 4899999999999999999999999999999999
Q ss_pred eeccc
Q 015292 176 STSQA 180 (409)
Q Consensus 176 ~~~~~ 180 (409)
.++.+
T Consensus 96 ~~a~~ 100 (101)
T 2la4_A 96 GWGKE 100 (101)
T ss_dssp CBCCC
T ss_pred EeccC
Confidence 98764
No 276
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1e-17 Score=128.75 Aligned_cols=81 Identities=21% Similarity=0.248 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCe----eEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceE
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEV----TEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v----~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l 173 (409)
....++|||+|||+++|+++|+++|++||.| ..|+|+.+. +|+++|||||+|.+.++|.+||+. ++..|.||.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3457899999999999999999999999975 689999984 799999999999999999999975 9999999999
Q ss_pred EEeeccc
Q 015292 174 RCSTSQA 180 (409)
Q Consensus 174 ~v~~~~~ 180 (409)
.|..+..
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9987753
No 277
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.1e-17 Score=122.76 Aligned_cols=80 Identities=20% Similarity=0.422 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++|+++|+++|++||.| +++.+ .++.++|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4567999999999999999999999999987 56665 5699999999999999999999999999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.+.
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8764
No 278
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.71 E-value=3e-17 Score=119.31 Aligned_cols=83 Identities=24% Similarity=0.367 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
...++|||+|||+++++++|+++|++| .|..|++. +++|||||+|.+.++|.+|++.|++..+.|++|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 457899999999999999999999999 99999984 46999999999999999999999999999999999999
Q ss_pred ccccccccCC
Q 015292 179 QAKYRLFIGN 188 (409)
Q Consensus 179 ~~~~~l~v~~ 188 (409)
.....+++.|
T Consensus 76 ~~~~~~~~~n 85 (88)
T 1wg1_A 76 PTDALLCSGP 85 (88)
T ss_dssp CCCCCCSCCC
T ss_pred CCCceEecCC
Confidence 8877777765
No 279
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.8e-17 Score=124.33 Aligned_cols=79 Identities=10% Similarity=0.205 Sum_probs=71.8
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecC----HHH----HHHHHH--HhCCCc
Q 015292 102 SEVYIGGI----PHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRN----VEL----ASKAID--KLNNTE 167 (409)
Q Consensus 102 ~~l~v~nL----p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~----~~~----A~~a~~--~l~~~~ 167 (409)
+.|||+|| |+.+++.+|+++|+.||+|.+|.++.|+.||+++|||||+|.+ ++. |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 433 888988 689999
Q ss_pred cCCceEEEeeccc
Q 015292 168 FKGKKIRCSTSQA 180 (409)
Q Consensus 168 ~~g~~l~v~~~~~ 180 (409)
|.|++|+|.+...
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999987654
No 280
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.9e-17 Score=124.24 Aligned_cols=80 Identities=16% Similarity=0.202 Sum_probs=72.7
Q ss_pred eEEEEcCC----CCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCC----HHH----HHHHHH--HhCCce
Q 015292 276 KAVYVKNL----PRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE----RSS----AMKALK--NTEKYE 341 (409)
Q Consensus 276 ~~l~V~nL----p~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~----~e~----A~~A~~--~l~~~~ 341 (409)
+.|||+|| |+.+++..|+.+|+.||.|.++.++.|+.++.++|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 333 888988 789999
Q ss_pred ecCeEEEEEecCCC
Q 015292 342 LDGQALECSLAKPQ 355 (409)
Q Consensus 342 ~~g~~l~v~~a~~~ 355 (409)
|+|++|+|.+.+..
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999987653
No 281
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.2e-17 Score=117.88 Aligned_cols=76 Identities=22% Similarity=0.444 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHh-CCCccCCceEEEe
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL-NNTEFKGKKIRCS 176 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l-~~~~~~g~~l~v~ 176 (409)
+...++|||+|||+++++++|+++|++||.|..|+++++ +|||||+|.+.++|.+|+..| ++..+.|++|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 456789999999999999999999999999999999874 789999999999999999988 9999999999998
Q ss_pred ecc
Q 015292 177 TSQ 179 (409)
Q Consensus 177 ~~~ 179 (409)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 863
No 282
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=8e-17 Score=123.33 Aligned_cols=79 Identities=22% Similarity=0.261 Sum_probs=70.6
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcE-EEEEeCCHHHHHHHHHHhCCceecC--eEEEE
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRI-GFVHFAERSSAMKALKNTEKYELDG--QALEC 349 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~-afV~F~~~e~A~~A~~~l~~~~~~g--~~l~v 349 (409)
.....|||+||++.+++++|+++|++||.|.+|+|+.. .|| |||+|.+.++|.+|+..|||..|.| +.|+|
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 33456789999999999999999999999999999752 286 9999999999999999999999987 79999
Q ss_pred EecCCCCc
Q 015292 350 SLAKPQAD 357 (409)
Q Consensus 350 ~~a~~~~~ 357 (409)
.||++..-
T Consensus 97 ~~Ak~~~l 104 (124)
T 2e5i_A 97 EYARPTRL 104 (124)
T ss_dssp ECCSCSCC
T ss_pred EEecCCcc
Confidence 99998754
No 283
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.70 E-value=4.9e-17 Score=134.13 Aligned_cols=86 Identities=28% Similarity=0.432 Sum_probs=79.3
Q ss_pred CCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015292 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (409)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~ 350 (409)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34557899999999999999999999999999999999998 66679999999999999999999999999999999999
Q ss_pred ecCCCCc
Q 015292 351 LAKPQAD 357 (409)
Q Consensus 351 ~a~~~~~ 357 (409)
||.....
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9987543
No 284
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=8.3e-17 Score=119.13 Aligned_cols=78 Identities=24% Similarity=0.395 Sum_probs=71.2
Q ss_pred cCCCCCCeEEEcCCCC-CCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 015292 96 ALPPHGSEVYIGGIPH-DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (409)
Q Consensus 96 ~~~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 174 (409)
..++..++|||+|||+ ++++++|+++|++||.|..|+|. +|||||+|.+.++|.+|+..|++..+.|+.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4456789999999998 99999999999999999999983 78999999999999999999999999999999
Q ss_pred Eeecccc
Q 015292 175 CSTSQAK 181 (409)
Q Consensus 175 v~~~~~~ 181 (409)
|.++.+.
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9998754
No 285
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.70 E-value=6e-17 Score=117.76 Aligned_cols=75 Identities=23% Similarity=0.394 Sum_probs=69.7
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCC
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (409)
.++|||+|||+.+++++|+++|++| .|..++|. .++|||||+|.+.++|.+|+..|||..+.|++|+|.++..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 4789999999999999999999999 99999984 3479999999999999999999999999999999999976
Q ss_pred CC
Q 015292 355 QA 356 (409)
Q Consensus 355 ~~ 356 (409)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 286
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.70 E-value=1.4e-17 Score=128.29 Aligned_cols=81 Identities=21% Similarity=0.300 Sum_probs=72.5
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCcee--EEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT--KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~ 350 (409)
...++|||+|||+++|+++|+++|+.| .|. .|+|++++. +.++|||||+|.+.++|.+||.. ++..|+||.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 345789999999999999999999999 566 899999988 56699999999999999999985 7799999999999
Q ss_pred ecCCCC
Q 015292 351 LAKPQA 356 (409)
Q Consensus 351 ~a~~~~ 356 (409)
++.++.
T Consensus 117 ~a~~~e 122 (126)
T 2hgm_A 117 KSSQEE 122 (126)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987643
No 287
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6.6e-17 Score=119.76 Aligned_cols=79 Identities=15% Similarity=0.326 Sum_probs=72.1
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEE-eeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
..++|||+|||+.+++++|+.+|++||.|..| .|+.++.+ |.|||+|.+.++|.+|+..|||..|.|++|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35899999999999999999999999999999 48877643 45999999999999999999999999999999999
Q ss_pred CCCC
Q 015292 353 KPQA 356 (409)
Q Consensus 353 ~~~~ 356 (409)
.++.
T Consensus 90 ~~~~ 93 (96)
T 2e44_A 90 PDEM 93 (96)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9874
No 288
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=3.1e-18 Score=128.27 Aligned_cols=82 Identities=17% Similarity=0.312 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++|+++|+++|++||.|.. .++.+..+|.++|||||+|.+.++|.+|++ |++..|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345789999999999999999999999999888 667777779999999999999999999998 999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.++
T Consensus 92 a~~~ 95 (101)
T 1fj7_A 92 PKGR 95 (101)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8754
No 289
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.70 E-value=1.5e-17 Score=124.67 Aligned_cols=82 Identities=16% Similarity=0.327 Sum_probs=75.4
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
...++|||+|||+.+++++|+++|+.||.|..|+|++++ ++.++|||||+|.+.++|.+|+. ++..|+|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345899999999999999999999999999999999998 66679999999999999999999 999999999999999
Q ss_pred CCCCc
Q 015292 353 KPQAD 357 (409)
Q Consensus 353 ~~~~~ 357 (409)
.++..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 87654
No 290
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=2.1e-17 Score=122.77 Aligned_cols=82 Identities=20% Similarity=0.411 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceE
Q 015292 98 PPHGSEVYIGGIPHDASEHDLR----DFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l 173 (409)
.+..++|||+|||+++++++|+ ++|++||.|..|++.. +|.++|||||+|.+.++|.+|+..|++..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567999999999999999999 9999999999999874 37789999999999999999999999999999999
Q ss_pred EEeeccccc
Q 015292 174 RCSTSQAKY 182 (409)
Q Consensus 174 ~v~~~~~~~ 182 (409)
.|.++.+..
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999987654
No 291
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=9.7e-17 Score=113.73 Aligned_cols=79 Identities=20% Similarity=0.333 Sum_probs=69.3
Q ss_pred CCCCCeEEEcCCCCCCCHHH----HHHHHhcc-CCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCce
Q 015292 98 PPHGSEVYIGGIPHDASEHD----LRDFCQSI-GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKK 172 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~----l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~ 172 (409)
|+..++|||+|||+++++++ |+.+|++| |+|.+| +| |+|||.|.+.++|.+|++.|+|..+.||+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 44455599999999999988 55899999 599988 24 99999999999999999999999999999
Q ss_pred EEEeeccccccccc
Q 015292 173 IRCSTSQAKYRLFI 186 (409)
Q Consensus 173 l~v~~~~~~~~l~v 186 (409)
|+|.++..+..++.
T Consensus 76 i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 76 IIVSFTPKNRELCE 89 (96)
T ss_dssp CEEESSCCSCCCCC
T ss_pred EEEEecCCCcceeE
Confidence 99999998776544
No 292
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=7.9e-17 Score=121.95 Aligned_cols=78 Identities=27% Similarity=0.431 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCC-----ce
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG-----KK 172 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g-----~~ 172 (409)
+...++|||+|||+++|+++|+++|++||.|..|+|+.+ |||||+|.+.++|.+||+.||+..|.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 345789999999999999999999999999999999875 799999999999999999999999999 99
Q ss_pred EEEeeccccc
Q 015292 173 IRCSTSQAKY 182 (409)
Q Consensus 173 l~v~~~~~~~ 182 (409)
|.|.++.++.
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 9999987643
No 293
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.9e-17 Score=121.49 Aligned_cols=83 Identities=23% Similarity=0.434 Sum_probs=75.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe
Q 015292 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (409)
Q Consensus 97 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 176 (409)
.+...++|||+|||+++|+++|+++|+.|+ .|+++.++.++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 355679999999999999999999999874 67888888889999999999999999999999999999999999999
Q ss_pred eccccc
Q 015292 177 TSQAKY 182 (409)
Q Consensus 177 ~~~~~~ 182 (409)
++.++.
T Consensus 88 ~a~~~~ 93 (102)
T 2fc8_A 88 WAKPKG 93 (102)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 987643
No 294
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.9e-17 Score=122.62 Aligned_cols=80 Identities=29% Similarity=0.562 Sum_probs=74.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe
Q 015292 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (409)
Q Consensus 97 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 176 (409)
.+...++|||+|||+++++++|+.+|++||.|..|+|+.+ +|||||+|.+.++|.+|+..|++..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4556799999999999999999999999999999999876 7899999999999999999999999999999999
Q ss_pred eccccc
Q 015292 177 TSQAKY 182 (409)
Q Consensus 177 ~~~~~~ 182 (409)
++.+..
T Consensus 95 ~a~~~~ 100 (109)
T 1x4g_A 95 WGKESP 100 (109)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 987654
No 295
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.70 E-value=4.9e-17 Score=124.44 Aligned_cols=74 Identities=18% Similarity=0.297 Sum_probs=66.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeE-----EEE
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA-----LEC 349 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~-----l~v 349 (409)
.++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..|||..|.|+. |+|
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 478999999999999999999999999999999876 89999999999999999999999999998 677
Q ss_pred EecCCC
Q 015292 350 SLAKPQ 355 (409)
Q Consensus 350 ~~a~~~ 355 (409)
..+.+.
T Consensus 89 ~~~~~~ 94 (115)
T 3beg_B 89 KVDGPR 94 (115)
T ss_dssp EECC--
T ss_pred ccCCCC
Confidence 766654
No 296
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5.1e-17 Score=120.51 Aligned_cols=79 Identities=23% Similarity=0.465 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++|+++|+++|++||.|. +.++. +.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999997 66665 45799999999999999999999999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.++
T Consensus 91 a~~~ 94 (97)
T 2e5j_A 91 ARQQ 94 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8764
No 297
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=9.2e-17 Score=118.36 Aligned_cols=78 Identities=21% Similarity=0.323 Sum_probs=67.9
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
..++|||+|||+.+++++|+.+|++||.|..| +.++.++. ||||+|.+.++|.+|+. |||..|.|+.|+|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 34799999999999999999999999999987 33333322 99999999999999999 99999999999999887
Q ss_pred CCCc
Q 015292 354 PQAD 357 (409)
Q Consensus 354 ~~~~ 357 (409)
++..
T Consensus 81 ~~~~ 84 (94)
T 2e5g_A 81 QKEF 84 (94)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 6544
No 298
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.69 E-value=1.9e-17 Score=127.41 Aligned_cols=80 Identities=21% Similarity=0.369 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCee--EEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT--EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~--~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 175 (409)
+...++|||+|||+++|+++|+++|++| .|. .|+|++++. |+++|||||+|.+.++|.+||+ +++..|.||.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 4567899999999999999999999999 677 999999987 9999999999999999999997 5789999999999
Q ss_pred eeccc
Q 015292 176 STSQA 180 (409)
Q Consensus 176 ~~~~~ 180 (409)
.++..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 299
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.69 E-value=1.3e-17 Score=133.36 Aligned_cols=86 Identities=22% Similarity=0.311 Sum_probs=72.2
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEE--eeCCC---CCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEE
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKV--VVPPA---KPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQAL 347 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v--~i~~~---~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l 347 (409)
.+.++|||+|||+.+|+++|+.+|++||.|..+ +++.+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 345899999999999999999999999998775 12222 2244558999999999999999999999999999999
Q ss_pred EEEecCCCCcc
Q 015292 348 ECSLAKPQADQ 358 (409)
Q Consensus 348 ~v~~a~~~~~~ 358 (409)
.|.+|++...+
T Consensus 123 ~V~~a~~~~~~ 133 (143)
T 3egn_A 123 VVQFARSARPK 133 (143)
T ss_dssp EEEECCCSCC-
T ss_pred EEEECCCCCCc
Confidence 99999876543
No 300
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.69 E-value=6.8e-17 Score=133.25 Aligned_cols=85 Identities=15% Similarity=0.291 Sum_probs=79.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++++++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++|.+|++.|++..|.|+.|.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4557899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccccc
Q 015292 178 SQAKYR 183 (409)
Q Consensus 178 ~~~~~~ 183 (409)
+.....
T Consensus 164 a~~~~~ 169 (177)
T 2f3j_A 164 VASQID 169 (177)
T ss_dssp ESSGGG
T ss_pred ecCCCC
Confidence 876443
No 301
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-17 Score=127.75 Aligned_cols=81 Identities=21% Similarity=0.219 Sum_probs=72.8
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCce----eEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRI----TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v----~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~ 350 (409)
..+|||+|||+++|+++|+++|++||.| ..|+|+.+. ++.++|||||+|.+.++|.+||.. |+..|.||.|.|.
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 3799999999999999999999999975 689999886 455699999999999999999996 9999999999999
Q ss_pred ecCCCCc
Q 015292 351 LAKPQAD 357 (409)
Q Consensus 351 ~a~~~~~ 357 (409)
.+.+...
T Consensus 101 ~a~~~e~ 107 (123)
T 2dha_A 101 RSTAAEV 107 (123)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9876544
No 302
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.69 E-value=1.3e-16 Score=115.84 Aligned_cols=76 Identities=22% Similarity=0.409 Sum_probs=63.0
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCce--ecCeEEEEE
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE--LDGQALECS 350 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~--~~g~~l~v~ 350 (409)
.+.++|||+|||+++|+++|+++|++||.|.+|+|+++ +||||||+|.+.++|.+ |++.. +.|+.|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 34489999999999999999999999999999999985 48999999999999983 45544 469999999
Q ss_pred ecCCCCc
Q 015292 351 LAKPQAD 357 (409)
Q Consensus 351 ~a~~~~~ 357 (409)
+|.++..
T Consensus 80 ~a~~k~~ 86 (89)
T 3d2w_A 80 NAEPKHN 86 (89)
T ss_dssp ECC----
T ss_pred EcCCCCc
Confidence 9987653
No 303
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4.3e-17 Score=123.85 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
..++|||+|||+++|+++|+++|++||.|..|.|.. ++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 458999999999999999999999999999999874 47899999999999999999999999999999999986
Q ss_pred c
Q 015292 180 A 180 (409)
Q Consensus 180 ~ 180 (409)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 304
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.69 E-value=1.1e-17 Score=131.34 Aligned_cols=80 Identities=25% Similarity=0.336 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++|+++|+++|++|| |..|+|++++. |+++|||||+|.+.++|.+|| .+++..|.|+.|.|..
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999 67999999976 999999999999999999999 7899999999999988
Q ss_pred ccc
Q 015292 178 SQA 180 (409)
Q Consensus 178 ~~~ 180 (409)
+..
T Consensus 120 a~~ 122 (139)
T 2hgn_A 120 NST 122 (139)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 305
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=8e-17 Score=137.92 Aligned_cols=85 Identities=19% Similarity=0.269 Sum_probs=78.6
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
.+.++|||+|||+++|+++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|.+|+..||+..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34579999999999999999999999999999999999988888999999999999999999999999999999999998
Q ss_pred CCCCc
Q 015292 353 KPQAD 357 (409)
Q Consensus 353 ~~~~~ 357 (409)
.....
T Consensus 93 ~~~~~ 97 (213)
T 4f02_A 93 QRDPS 97 (213)
T ss_dssp CCCTH
T ss_pred ccccc
Confidence 76543
No 306
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.69 E-value=1.8e-17 Score=124.26 Aligned_cols=80 Identities=30% Similarity=0.567 Sum_probs=74.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
..++|||+|||+++++++|+++|++||.|..|+|+.++ +|.++|||||+|.+.++|.+|+. ++..|.|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45899999999999999999999999999999999998 89999999999999999999997 9999999999998886
Q ss_pred ccc
Q 015292 180 AKY 182 (409)
Q Consensus 180 ~~~ 182 (409)
+..
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 543
No 307
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-17 Score=128.08 Aligned_cols=80 Identities=25% Similarity=0.390 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCe----eEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceE
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEV----TEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v----~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l 173 (409)
+...++|||+|||+++|+++|+++|++||.| ..+++. +|.++|||||+|.+.++|.+|+..|++..|.|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3457899999999999999999999999998 555554 58899999999999999999999999999999999
Q ss_pred EEeecccc
Q 015292 174 RCSTSQAK 181 (409)
Q Consensus 174 ~v~~~~~~ 181 (409)
.|.++.+.
T Consensus 98 ~v~~a~~~ 105 (115)
T 2cpx_A 98 VIEFGKNK 105 (115)
T ss_dssp EEEECCCC
T ss_pred EEEEccCC
Confidence 99998764
No 308
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.69 E-value=1.2e-16 Score=119.44 Aligned_cols=83 Identities=18% Similarity=0.244 Sum_probs=72.7
Q ss_pred ccceEEEEcCCCC-----CCCHHHHHHHHhhcCceeEEeeCCCCCC-CCCCcEEEEEeCCHHHHHHHHHHhCCceecCeE
Q 015292 273 SQVKAVYVKNLPR-----NVTQDQLKKLFEHHGRITKVVVPPAKPG-QEKNRIGFVHFAERSSAMKALKNTEKYELDGQA 346 (409)
Q Consensus 273 ~~~~~l~V~nLp~-----~~t~~~L~~~F~~~G~v~~v~i~~~~~~-~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~ 346 (409)
.++++|+|+||.. +-++++|+++|++||.|.+|.|++++.+ +.++|||||+|.+.++|.+|+..|||+.|+||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3458999999963 2378999999999999999999988643 466899999999999999999999999999999
Q ss_pred EEEEecCCC
Q 015292 347 LECSLAKPQ 355 (409)
Q Consensus 347 l~v~~a~~~ 355 (409)
|.|.++.+.
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999999763
No 309
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=116.83 Aligned_cols=78 Identities=31% Similarity=0.500 Sum_probs=71.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe
Q 015292 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (409)
Q Consensus 97 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 176 (409)
.+...++|||+|||+++|+++|+++|++||.|..|++++ +||||+|.+.++|.+|+..|++..|.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 345679999999999999999999999999999999973 399999999999999999999999999999999
Q ss_pred eccccc
Q 015292 177 TSQAKY 182 (409)
Q Consensus 177 ~~~~~~ 182 (409)
++.++.
T Consensus 78 ~a~~~~ 83 (92)
T 2dgt_A 78 LSTSRL 83 (92)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 997653
No 310
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=2e-18 Score=132.72 Aligned_cols=83 Identities=22% Similarity=0.460 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeE--------EEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCC
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTE--------VRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g 170 (409)
.+.++|||+|||+++++++|+++|++||.|.. |+|+.++.+|.++|||||+|.+.++|.+|+..|++..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35689999999999999999999999999999 9999998889999999999999999999999999999999
Q ss_pred ceEEEeecccc
Q 015292 171 KKIRCSTSQAK 181 (409)
Q Consensus 171 ~~l~v~~~~~~ 181 (409)
+.|.|.++.++
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 99999998754
No 311
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.68 E-value=1.1e-16 Score=120.86 Aligned_cols=78 Identities=27% Similarity=0.513 Sum_probs=71.6
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 015292 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (409)
Q Consensus 96 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 175 (409)
..+...++|||+|||+++|+++|+++|++||.|..|+++ +|||||+|.+.++|.+|+..|++..|.|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 335567999999999999999999999999999999997 689999999999999999999999999999999
Q ss_pred eecccc
Q 015292 176 STSQAK 181 (409)
Q Consensus 176 ~~~~~~ 181 (409)
.++.+.
T Consensus 98 ~~a~~~ 103 (108)
T 2jvo_A 98 VYSKLP 103 (108)
T ss_dssp ESCSCC
T ss_pred EEecCC
Confidence 998754
No 312
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=116.44 Aligned_cols=77 Identities=27% Similarity=0.468 Sum_probs=71.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe
Q 015292 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (409)
Q Consensus 97 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 176 (409)
.+...++|||+|||+++|+++|+++|++||.|..|++++ +||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 355679999999999999999999999999999999973 399999999999999999999999999999999
Q ss_pred ecccc
Q 015292 177 TSQAK 181 (409)
Q Consensus 177 ~~~~~ 181 (409)
++.+.
T Consensus 77 ~a~~~ 81 (90)
T 2dnp_A 77 LSTKG 81 (90)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 98754
No 313
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.7e-17 Score=117.26 Aligned_cols=78 Identities=23% Similarity=0.425 Sum_probs=66.8
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
..++|||+|||+++++++|+++|++||.|..|+|+.+ ++|||||+|.+.++|.+|+.. ...+.|++|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 3489999999999999999999999999999999876 489999999999999764332 345689999999998
Q ss_pred CCCcc
Q 015292 354 PQADQ 358 (409)
Q Consensus 354 ~~~~~ 358 (409)
++...
T Consensus 77 ~~~~~ 81 (88)
T 1wf0_A 77 PKHNS 81 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 86543
No 314
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=1e-16 Score=118.62 Aligned_cols=76 Identities=26% Similarity=0.444 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe
Q 015292 98 PPHGSEVYIGGIPH-DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (409)
Q Consensus 98 ~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 176 (409)
.++.++|||+|||+ ++|+++|+.+|++||.|..|+|. +|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45679999999999 99999999999999999999984 6899999999999999999999999999999999
Q ss_pred ecccc
Q 015292 177 TSQAK 181 (409)
Q Consensus 177 ~~~~~ 181 (409)
++.+.
T Consensus 79 ~a~~~ 83 (96)
T 2kvi_A 79 VSSSN 83 (96)
T ss_dssp EEECC
T ss_pred EcCcC
Confidence 88653
No 315
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=1.8e-16 Score=130.56 Aligned_cols=83 Identities=22% Similarity=0.326 Sum_probs=78.5
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCC
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (409)
.++|||+|||+++++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..|+|..+.|++|.|.++.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 47999999999999999999999999999999999988887899999999999999999999999999999999999987
Q ss_pred CCc
Q 015292 355 QAD 357 (409)
Q Consensus 355 ~~~ 357 (409)
...
T Consensus 83 ~~~ 85 (168)
T 1b7f_A 83 GGE 85 (168)
T ss_dssp CSS
T ss_pred Ccc
Confidence 654
No 316
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.67 E-value=2.1e-16 Score=118.56 Aligned_cols=76 Identities=18% Similarity=0.399 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
....++|||+|||+++|+++|+++|++||.|..|+|+ ++||||+|.+.++|.+|++.|++..|.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3456899999999999999999999999999999986 45999999999999999999999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.+.
T Consensus 80 a~~~ 83 (103)
T 2dgu_A 80 AKPP 83 (103)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8754
No 317
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.67 E-value=2.1e-16 Score=133.82 Aligned_cols=77 Identities=19% Similarity=0.250 Sum_probs=72.5
Q ss_pred ceEEEEcCCC-CCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 275 VKAVYVKNLP-RNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 275 ~~~l~V~nLp-~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
+++|||+||| +.+++++|+++|++||.|.+|+|++++ +|||||+|.+.++|.+||..|||..|.|+.|+|.+++
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 4799999999 899999999999999999999999864 7999999999999999999999999999999999998
Q ss_pred CCC
Q 015292 354 PQA 356 (409)
Q Consensus 354 ~~~ 356 (409)
.+.
T Consensus 79 ~~~ 81 (205)
T 3tyt_A 79 QPA 81 (205)
T ss_dssp CSC
T ss_pred CCc
Confidence 654
No 318
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.67 E-value=2.4e-16 Score=129.58 Aligned_cols=83 Identities=25% Similarity=0.427 Sum_probs=78.3
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCC
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (409)
.++|||+|||+.+++++|+++|+.||.|..+.|++++.++.++|||||+|.+.++|.+|+..|||..+.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 37999999999999999999999999999999999987777899999999999999999999999999999999999987
Q ss_pred CCc
Q 015292 355 QAD 357 (409)
Q Consensus 355 ~~~ 357 (409)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 654
No 319
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=6e-17 Score=119.99 Aligned_cols=78 Identities=17% Similarity=0.351 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
...++|||+|||+++|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 346899999999999999999999999988766 245889999999999999999999999999999999999998
Q ss_pred ccc
Q 015292 179 QAK 181 (409)
Q Consensus 179 ~~~ 181 (409)
.++
T Consensus 89 ~~~ 91 (96)
T 1fjc_A 89 GEK 91 (96)
T ss_dssp SSS
T ss_pred CCC
Confidence 754
No 320
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.67 E-value=2e-16 Score=127.43 Aligned_cols=79 Identities=24% Similarity=0.466 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
....++|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999876 589999999999999999999999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.++
T Consensus 145 a~~~ 148 (150)
T 2i2y_A 145 SNGE 148 (150)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8764
No 321
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.1e-16 Score=116.13 Aligned_cols=77 Identities=25% Similarity=0.358 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcc--CCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSI--GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 175 (409)
....++|||+|||+++|+++|+++|++| |.|..|++. +|||||+|.+.++|.+|+..|++..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3457899999999999999999999999 999999874 679999999999999999999999999999999
Q ss_pred eeccccc
Q 015292 176 STSQAKY 182 (409)
Q Consensus 176 ~~~~~~~ 182 (409)
.++.+..
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9987643
No 322
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=117.39 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEE-EeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVR-IMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~-i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
...++|||+|||+++|+++|+.+|++||.|..|+ |+.++.+| .|||+|.+.++|.+|+..|++..|.|++|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3478999999999999999999999999999994 88776533 399999999999999999999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8764
No 323
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.9e-16 Score=120.01 Aligned_cols=78 Identities=27% Similarity=0.450 Sum_probs=68.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCC---CCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS---SENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 175 (409)
...++|||+|||+++|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+|++.|+ .+.|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578999999999999999999999999999 888888777 7999999999999999999999884 366777666
Q ss_pred eecc
Q 015292 176 STSQ 179 (409)
Q Consensus 176 ~~~~ 179 (409)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 5443
No 324
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.66 E-value=4.4e-16 Score=130.37 Aligned_cols=120 Identities=14% Similarity=0.200 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhcCCCccCCCCCcceecCCCCCCCCC-----CCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCC
Q 015292 235 HKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS-----GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPP 309 (409)
Q Consensus 235 ~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~ 309 (409)
......|+.......+.+......+........+.. .....++|||+|||+.+++++|+++|++||.|..|+|++
T Consensus 64 ~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~ 143 (193)
T 2voo_A 64 FNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRR 143 (193)
T ss_dssp HHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEE
T ss_pred HHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEE
Confidence 345555555553344555555555555432221111 123458999999999999999999999999999999999
Q ss_pred CCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCCC
Q 015292 310 AKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (409)
Q Consensus 310 ~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 356 (409)
+.. +.++|||||+|.+.++|.+|+..++ ..|+|+.|.|.+++.-.
T Consensus 144 ~~~-~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 144 TLH-KAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDYF 188 (193)
T ss_dssp CTT-CCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC-
T ss_pred CCC-CCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHHH
Confidence 876 4558999999999999999998655 59999999999987643
No 325
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=6.3e-16 Score=118.16 Aligned_cols=80 Identities=23% Similarity=0.365 Sum_probs=70.1
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCC---CCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG---QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~ 350 (409)
..++|||+|||+++++++|+++|++||.|. +.++.+..+ +.++|||||+|.+.++|.+|+..|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 458999999999999999999999999999 888888776 5679999999999999999999985 4788888887
Q ss_pred ecCCCC
Q 015292 351 LAKPQA 356 (409)
Q Consensus 351 ~a~~~~ 356 (409)
.+.+..
T Consensus 84 ~~~~~~ 89 (114)
T 2dnl_A 84 SSPTIK 89 (114)
T ss_dssp CCSSSC
T ss_pred cCCCcC
Confidence 665443
No 326
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.66 E-value=5e-16 Score=112.71 Aligned_cols=72 Identities=19% Similarity=0.433 Sum_probs=67.0
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhc----C-------ceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCce
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHH----G-------RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~----G-------~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~ 341 (409)
.+.++|||+|||+++++++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 345899999999999999999999999 8 8999999876 599999999999999999 999999
Q ss_pred ecCeEEEEEe
Q 015292 342 LDGQALECSL 351 (409)
Q Consensus 342 ~~g~~l~v~~ 351 (409)
|.|+.|+|..
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 327
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.3e-16 Score=118.38 Aligned_cols=76 Identities=20% Similarity=0.302 Sum_probs=67.9
Q ss_pred CCCCCeEEE--cCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCcc-----CC
Q 015292 98 PPHGSEVYI--GGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF-----KG 170 (409)
Q Consensus 98 ~~~~~~l~v--~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~-----~g 170 (409)
..+.++||| +|||+++|+++|+++|++||.|..|.|+. .+|||||+|.+.++|.+|++.|||..+ .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 445788999 77999999999999999999999998864 278999999999999999999999988 68
Q ss_pred ceEEEeecc
Q 015292 171 KKIRCSTSQ 179 (409)
Q Consensus 171 ~~l~v~~~~ 179 (409)
+.|.|.++.
T Consensus 96 ~~l~v~~a~ 104 (114)
T 2cq2_A 96 ITLYLNFVE 104 (114)
T ss_dssp EECEEEEES
T ss_pred cEEEEEecc
Confidence 889888764
No 328
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.9e-16 Score=115.01 Aligned_cols=78 Identities=21% Similarity=0.423 Sum_probs=69.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
....++|||+|||+++|+++|+.+|++||.|..| +.++.+|+ ||||+|.+.++|.+|+. |++..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456899999999999999999999999999987 55555555 99999999999999998 999999999999998
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.++
T Consensus 79 a~~~ 82 (94)
T 2e5g_A 79 REQK 82 (94)
T ss_dssp SCCS
T ss_pred CCcC
Confidence 7643
No 329
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.65 E-value=7.3e-16 Score=126.57 Aligned_cols=82 Identities=16% Similarity=0.400 Sum_probs=78.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
....++|||+|||.++|+++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 44578999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cc
Q 015292 178 SQ 179 (409)
Q Consensus 178 ~~ 179 (409)
+.
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 75
No 330
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.6e-16 Score=115.74 Aligned_cols=77 Identities=25% Similarity=0.449 Sum_probs=69.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCC-eeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCC-CccCCceEEE
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGE-VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN-TEFKGKKIRC 175 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~-v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~-~~~~g~~l~v 175 (409)
+...++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||+ ..|.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 6656553 378999999999999999999999 9999999999
Q ss_pred eecccc
Q 015292 176 STSQAK 181 (409)
Q Consensus 176 ~~~~~~ 181 (409)
.++.++
T Consensus 78 ~~a~~~ 83 (93)
T 2cqh_A 78 DYSVSK 83 (93)
T ss_dssp EECCCC
T ss_pred EEccCc
Confidence 998764
No 331
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=3.8e-16 Score=118.69 Aligned_cols=74 Identities=23% Similarity=0.408 Sum_probs=69.5
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 99 PHGSEVYIGGIPHD-ASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 99 ~~~~~l~v~nLp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
...++|||+|||++ +|+++|+++|++||.|..|+| ++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34589999999999 999999999999999999998 478999999999999999999999999999999999
Q ss_pred ccc
Q 015292 178 SQA 180 (409)
Q Consensus 178 ~~~ 180 (409)
+..
T Consensus 97 a~~ 99 (110)
T 1wf1_A 97 AGE 99 (110)
T ss_dssp SCC
T ss_pred CCC
Confidence 874
No 332
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.64 E-value=1.2e-15 Score=114.00 Aligned_cols=83 Identities=20% Similarity=0.291 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCC-----CCCHHHHHHHHhccCCeeEEEEeeCCCC-CCceeeEEEEecCHHHHHHHHHHhCCCccCCc
Q 015292 98 PPHGSEVYIGGIPH-----DASEHDLRDFCQSIGEVTEVRIMKGKDS-SENKGFAFVTFRNVELASKAIDKLNNTEFKGK 171 (409)
Q Consensus 98 ~~~~~~l~v~nLp~-----~~t~~~l~~~f~~~G~v~~v~i~~~~~~-g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~ 171 (409)
+..+++|+|+||.. +.++++|+++|++||.|.+|+|++++.+ ++++|||||+|.+.++|.+|+..|||..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 45679999999963 2478999999999999999999998654 68999999999999999999999999999999
Q ss_pred eEEEeeccc
Q 015292 172 KIRCSTSQA 180 (409)
Q Consensus 172 ~l~v~~~~~ 180 (409)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999874
No 333
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.64 E-value=8.1e-16 Score=127.13 Aligned_cols=80 Identities=23% Similarity=0.552 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
...++|||+|||+++|+++|+++|++||.|..|++++++.+|.++|||||+|.+.++|.+|+..||+..+.|+.|.|.++
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34689999999999999999999999999999999999888999999999999999999999999999999999999886
No 334
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.64 E-value=1.1e-15 Score=114.35 Aligned_cols=83 Identities=13% Similarity=0.263 Sum_probs=72.1
Q ss_pred ccceEEEEcCC--CCCCC--------HHHHHHHHhhcCceeEEeeCCCCCCC--CCCcEEEEEeCCHHHHHHHHHHhCCc
Q 015292 273 SQVKAVYVKNL--PRNVT--------QDQLKKLFEHHGRITKVVVPPAKPGQ--EKNRIGFVHFAERSSAMKALKNTEKY 340 (409)
Q Consensus 273 ~~~~~l~V~nL--p~~~t--------~~~L~~~F~~~G~v~~v~i~~~~~~~--~~~g~afV~F~~~e~A~~A~~~l~~~ 340 (409)
.++++|.|.|+ |..+. .++|++.|++||.|.+|.|++++.+. .++|+|||+|.+.++|.+|+..|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35689999999 33443 37899999999999999999988653 46899999999999999999999999
Q ss_pred eecCeEEEEEecCCC
Q 015292 341 ELDGQALECSLAKPQ 355 (409)
Q Consensus 341 ~~~g~~l~v~~a~~~ 355 (409)
.|+||.|+|.|+...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998754
No 335
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.64 E-value=4.5e-16 Score=124.30 Aligned_cols=80 Identities=23% Similarity=0.373 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeE--------EEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccC
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTE--------VRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~ 169 (409)
....++|||+|||+++|+++|+.+|++||.|.. +++.. +|+++|||||+|.+.++|.+|+..||+..|.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~---~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK---EGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE---ETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc---CCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 446789999999999999999999999999876 33333 4889999999999999999999999999999
Q ss_pred CceEEEeeccc
Q 015292 170 GKKIRCSTSQA 180 (409)
Q Consensus 170 g~~l~v~~~~~ 180 (409)
|+.|.|.++.+
T Consensus 119 g~~l~V~~a~~ 129 (143)
T 3egn_A 119 GKPMVVQFARS 129 (143)
T ss_dssp TEECEEEECCC
T ss_pred CcEEEEEECCC
Confidence 99999999865
No 336
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=7.4e-16 Score=111.87 Aligned_cols=76 Identities=34% Similarity=0.553 Sum_probs=62.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCc--cCCceEE
Q 015292 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE--FKGKKIR 174 (409)
Q Consensus 97 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~--~~g~~l~ 174 (409)
.+...++|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+ +++.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3556799999999999999999999999999999999874 69999999999999984 45554 4699999
Q ss_pred Eeecccc
Q 015292 175 CSTSQAK 181 (409)
Q Consensus 175 v~~~~~~ 181 (409)
|.++.++
T Consensus 78 v~~a~~k 84 (89)
T 3d2w_A 78 ISNAEPK 84 (89)
T ss_dssp EEECC--
T ss_pred EEEcCCC
Confidence 9988754
No 337
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.63 E-value=8.7e-16 Score=129.81 Aligned_cols=85 Identities=24% Similarity=0.401 Sum_probs=77.0
Q ss_pred CccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEe
Q 015292 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~ 351 (409)
....++|||+|||+++|+++|+++|+.||.|..|.|+++..++.++|||||+|.+.++|.+|+.. ++..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 34568999999999999999999999999999999999988888899999999999999999986 99999999999999
Q ss_pred cCCCCc
Q 015292 352 AKPQAD 357 (409)
Q Consensus 352 a~~~~~ 357 (409)
+.+...
T Consensus 89 ~~~~~~ 94 (196)
T 1l3k_A 89 AVSRED 94 (196)
T ss_dssp CCC---
T ss_pred ccCccc
Confidence 987544
No 338
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.63 E-value=6.9e-16 Score=145.28 Aligned_cols=82 Identities=15% Similarity=0.375 Sum_probs=78.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
..++|||+|||+.+|+++|..+|++||.|..|.|+.+..+|.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 45899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred cc
Q 015292 180 AK 181 (409)
Q Consensus 180 ~~ 181 (409)
+.
T Consensus 181 ~~ 182 (437)
T 3pgw_S 181 GR 182 (437)
T ss_pred CC
Confidence 54
No 339
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.63 E-value=5.5e-16 Score=112.51 Aligned_cols=71 Identities=30% Similarity=0.622 Sum_probs=66.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc----C-------CeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCcc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSI----G-------EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~ 168 (409)
..++|||+|||+++|+++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+ .|++..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 46899999999999999999999999 8 9999999754 899999999999999999 9999999
Q ss_pred CCceEEEee
Q 015292 169 KGKKIRCST 177 (409)
Q Consensus 169 ~g~~l~v~~ 177 (409)
.|+.|+|.+
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999975
No 340
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.63 E-value=1.4e-15 Score=116.84 Aligned_cols=76 Identities=14% Similarity=0.172 Sum_probs=69.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceee-EEEEecCHHHHHHHHHHhCCCccCC--ceEEEee
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGF-AFVTFRNVELASKAIDKLNNTEFKG--KKIRCST 177 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~-afV~F~~~~~A~~a~~~l~~~~~~g--~~l~v~~ 177 (409)
--.|||+||++.+|+++|+++|++||.|.+|+|+.+ ++|| |||+|.+.++|.+|++.|+|..|.| +.|+|.+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 356789999999999999999999999999999864 2677 9999999999999999999999988 9999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.+.
T Consensus 103 ak~~ 106 (130)
T 3zzy_A 103 SKLT 106 (130)
T ss_dssp CSCS
T ss_pred cCCC
Confidence 9865
No 341
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.63 E-value=1.6e-15 Score=130.24 Aligned_cols=83 Identities=14% Similarity=0.454 Sum_probs=79.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
...++|||+|||.++|+++|+++|++||.|..|+|+.+..+|.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred ccc
Q 015292 179 QAK 181 (409)
Q Consensus 179 ~~~ 181 (409)
.+.
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 764
No 342
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.63 E-value=6.9e-16 Score=118.00 Aligned_cols=73 Identities=29% Similarity=0.483 Sum_probs=65.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCce-----EE
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKK-----IR 174 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~-----l~ 174 (409)
..++|||+|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.||+..|.|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4689999999999999999999999999999999764 89999999999999999999999999998 66
Q ss_pred Eeecc
Q 015292 175 CSTSQ 179 (409)
Q Consensus 175 v~~~~ 179 (409)
|..+.
T Consensus 88 v~~~~ 92 (115)
T 3beg_B 88 VKVDG 92 (115)
T ss_dssp EEECC
T ss_pred eccCC
Confidence 65554
No 343
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.63 E-value=8.8e-16 Score=118.23 Aligned_cols=77 Identities=21% Similarity=0.347 Sum_probs=70.2
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEec
Q 015292 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a 352 (409)
.+.++|||+|| ++++++|+++|++||.|..|.|.. ++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET------TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 34589999996 699999999999999999999963 3799999999999999999999999999999999999
Q ss_pred CCCCc
Q 015292 353 KPQAD 357 (409)
Q Consensus 353 ~~~~~ 357 (409)
++...
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 98654
No 344
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.63 E-value=1.6e-15 Score=121.01 Aligned_cols=77 Identities=13% Similarity=0.117 Sum_probs=70.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCC--ceEEEeec
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG--KKIRCSTS 178 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g--~~l~v~~~ 178 (409)
-.+|||+|||+.+|+++|+++|++||.|.+|+|..+ .++|||||+|.+.++|.+|++.|+|..|.| ++|+|.++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 356899999999999999999999999999999754 258899999999999999999999999965 99999999
Q ss_pred ccc
Q 015292 179 QAK 181 (409)
Q Consensus 179 ~~~ 181 (409)
.+.
T Consensus 122 k~~ 124 (164)
T 1sjr_A 122 KLT 124 (164)
T ss_dssp SSS
T ss_pred cCC
Confidence 864
No 345
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.7e-15 Score=113.41 Aligned_cols=83 Identities=14% Similarity=0.254 Sum_probs=70.4
Q ss_pred ccceEEEEcCCCCCCC-----------HHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCce
Q 015292 273 SQVKAVYVKNLPRNVT-----------QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t-----------~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~ 341 (409)
.++++|+|+||..... +++|+++|++||.|..|.| .++. ++|||||+|.+.++|.+|+..|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~---~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH---PDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC---TTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC---CCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4568999999944332 5899999999999999977 3332 58999999999999999999999999
Q ss_pred ecCeEEEEEecCCCCccC
Q 015292 342 LDGQALECSLAKPQADQK 359 (409)
Q Consensus 342 ~~g~~l~v~~a~~~~~~~ 359 (409)
|+|++|+|.++.+.....
T Consensus 89 ~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 89 FGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp ETTEECEEEECCSCCCSS
T ss_pred ECCcEEEEEEeCCCCCcc
Confidence 999999999998865543
No 346
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.1e-15 Score=111.74 Aligned_cols=77 Identities=23% Similarity=0.459 Sum_probs=70.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|| ++|+++|+++|++||.|..|+|. .++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 456789999996 89999999999999999999994 4589999999999999999999999999999999999
Q ss_pred ccccc
Q 015292 178 SQAKY 182 (409)
Q Consensus 178 ~~~~~ 182 (409)
+.+..
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87643
No 347
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=1.4e-15 Score=129.86 Aligned_cols=81 Identities=21% Similarity=0.339 Sum_probs=71.4
Q ss_pred CCccceEEEEcCCCCCC---------CHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCce
Q 015292 271 GASQVKAVYVKNLPRNV---------TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (409)
Q Consensus 271 ~~~~~~~l~V~nLp~~~---------t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~ 341 (409)
.....++|||+||+..+ ++++|+.+|++||.|.+|+|+.. +|||||+|.+.++|..|+..|+|..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 34567899999999998 79999999999999999999864 6999999999999999999999999
Q ss_pred e------------cCeEEEEEecCCCCc
Q 015292 342 L------------DGQALECSLAKPQAD 357 (409)
Q Consensus 342 ~------------~g~~l~v~~a~~~~~ 357 (409)
| .|+.|.|.||+....
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EeccccccccccCCCCEEEEEEccCCCC
Confidence 9 899999999987543
No 348
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.62 E-value=1.8e-15 Score=128.07 Aligned_cols=84 Identities=21% Similarity=0.525 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEee
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 177 (409)
+...++|||+|||+++++++|+++|++||.|..|++.+++.+|.++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35679999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cccc
Q 015292 178 SQAK 181 (409)
Q Consensus 178 ~~~~ 181 (409)
+.++
T Consensus 191 a~~~ 194 (198)
T 2yh0_A 191 ASVG 194 (198)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8764
No 349
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.62 E-value=6.7e-16 Score=126.95 Aligned_cols=80 Identities=23% Similarity=0.570 Sum_probs=76.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeeccc
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 180 (409)
.++|||+|||+++|+++|+++|++||.|..|+++.++.+|.++|||||+|.+.++|.+|++ +++..+.|+.|.|.++.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 5789999999999999999999999999999999998899999999999999999999997 899999999999999876
Q ss_pred c
Q 015292 181 K 181 (409)
Q Consensus 181 ~ 181 (409)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 350
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.61 E-value=1.3e-14 Score=129.95 Aligned_cols=81 Identities=26% Similarity=0.475 Sum_probs=73.6
Q ss_pred ccceEEEEcCCCCCCCHHHHH----HHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015292 273 SQVKAVYVKNLPRNVTQDQLK----KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~ 348 (409)
.+.++|||+|||+++++++|+ ++|++||.|..|+|++ ++.++|||||+|.+.++|.+|+..|||..|.|+.|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 445899999999999999977 8999999999999987 334589999999999999999999999999999999
Q ss_pred EEecCCCC
Q 015292 349 CSLAKPQA 356 (409)
Q Consensus 349 v~~a~~~~ 356 (409)
|.|++...
T Consensus 84 v~~a~~~~ 91 (282)
T 3pgw_A 84 IQYAKTDS 91 (282)
T ss_pred EEEeccCc
Confidence 99997755
No 351
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=4e-15 Score=113.91 Aligned_cols=74 Identities=23% Similarity=0.308 Sum_probs=67.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceee-EEEEecCHHHHHHHHHHhCCCccCC--ceEEEeecc
Q 015292 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGF-AFVTFRNVELASKAIDKLNNTEFKG--KKIRCSTSQ 179 (409)
Q Consensus 103 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~-afV~F~~~~~A~~a~~~l~~~~~~g--~~l~v~~~~ 179 (409)
.|||+|||+.+|+++|+.+|++||.|.+|+|+.. .|| |||+|.+.++|..|++.|+|..|.| +.|+|.++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 3679999999999999999999999999999753 276 9999999999999999999999987 699999998
Q ss_pred ccc
Q 015292 180 AKY 182 (409)
Q Consensus 180 ~~~ 182 (409)
+..
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 654
No 352
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.58 E-value=7.8e-15 Score=126.98 Aligned_cols=81 Identities=25% Similarity=0.306 Sum_probs=75.2
Q ss_pred CccceEEEEcCCCC-CCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015292 272 ASQVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (409)
Q Consensus 272 ~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~ 350 (409)
..++++|||+|||+ .+++++|+++|+.||.|..|+|++++ +|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34568999999999 99999999999999999999999886 7999999999999999999999999999999999
Q ss_pred ecCCCCc
Q 015292 351 LAKPQAD 357 (409)
Q Consensus 351 ~a~~~~~ 357 (409)
++++...
T Consensus 106 ~a~~~~~ 112 (229)
T 2adc_A 106 LSKHQNV 112 (229)
T ss_dssp CCSCCCC
T ss_pred EecCccc
Confidence 9987643
No 353
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=6.2e-15 Score=123.38 Aligned_cols=78 Identities=24% Similarity=0.453 Sum_probs=71.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeeccc
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 180 (409)
.++|||+|||+++|+++|+++|++||.|..|+|+++.. |.++|||||+|.+.++|.+|+..+ +..|.|+.|.|.+...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 48999999999999999999999999999999999864 999999999999999999999654 5689999999987654
No 354
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.58 E-value=8.8e-15 Score=129.28 Aligned_cols=82 Identities=24% Similarity=0.395 Sum_probs=74.7
Q ss_pred CCCCCccceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEE
Q 015292 268 DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQAL 347 (409)
Q Consensus 268 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l 347 (409)
........++|||+|||+++|+++|+++|+.||.|..|.|.++ +|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l 88 (261)
T 3sde_A 15 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPL 88 (261)
T ss_dssp TCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCcee
Confidence 3344566789999999999999999999999999999999765 5999999999999999999999999999999
Q ss_pred EEEecCCC
Q 015292 348 ECSLAKPQ 355 (409)
Q Consensus 348 ~v~~a~~~ 355 (409)
.|.++.+.
T Consensus 89 ~v~~a~~~ 96 (261)
T 3sde_A 89 RIRFATHG 96 (261)
T ss_dssp EEEECCCS
T ss_pred EeeecccC
Confidence 99999764
No 355
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.57 E-value=6.3e-15 Score=113.41 Aligned_cols=77 Identities=23% Similarity=0.467 Sum_probs=70.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe
Q 015292 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (409)
Q Consensus 97 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 176 (409)
.+...++|||+|| ++|+++|+++|++||.|..|.|. .++|||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456799999996 79999999999999999999995 358999999999999999999999999999999999
Q ss_pred ecccc
Q 015292 177 TSQAK 181 (409)
Q Consensus 177 ~~~~~ 181 (409)
++.+.
T Consensus 107 ~a~~~ 111 (121)
T 2bz2_A 107 IARKQ 111 (121)
T ss_dssp ECCSS
T ss_pred EeCCC
Confidence 98764
No 356
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.57 E-value=1.1e-14 Score=120.59 Aligned_cols=78 Identities=27% Similarity=0.511 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccC---CceEEEe
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK---GKKIRCS 176 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~---g~~l~v~ 176 (409)
..++|||+|||+++|+++|+++|++||.|.+|+++++. +|.++|||||+|.+.++|.+|++.||+..+. |++|.|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 56899999999999999999999999999999999986 4999999999999999999999999998776 4999998
Q ss_pred ec
Q 015292 177 TS 178 (409)
Q Consensus 177 ~~ 178 (409)
++
T Consensus 173 ~a 174 (175)
T 3nmr_A 173 FA 174 (175)
T ss_dssp EC
T ss_pred ec
Confidence 86
No 357
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.5e-15 Score=110.34 Aligned_cols=77 Identities=31% Similarity=0.493 Sum_probs=65.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeec
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 178 (409)
...++|||+|||+++|+++|+++|++||.|..|+|+.+ ++|||||+|.+.++|.+|+. ....+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 35689999999999999999999999999999999865 68999999999999986542 234458999999988
Q ss_pred cccc
Q 015292 179 QAKY 182 (409)
Q Consensus 179 ~~~~ 182 (409)
.++.
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 358
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.56 E-value=1.4e-14 Score=122.56 Aligned_cols=77 Identities=26% Similarity=0.329 Sum_probs=73.0
Q ss_pred eEEEEcCCCC-CCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCC
Q 015292 276 KAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (409)
Q Consensus 276 ~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (409)
++|||+|||+ .+++++|+++|+.||.|..|+|++++ +|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 7999999999 99999999999999999999999886 79999999999999999999999999999999999987
Q ss_pred CCc
Q 015292 355 QAD 357 (409)
Q Consensus 355 ~~~ 357 (409)
...
T Consensus 79 ~~~ 81 (198)
T 1qm9_A 79 QNV 81 (198)
T ss_dssp CSC
T ss_pred CCc
Confidence 643
No 359
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.55 E-value=6.7e-15 Score=112.03 Aligned_cols=81 Identities=16% Similarity=0.267 Sum_probs=70.5
Q ss_pred cceEEEEcCCCC--CC---CHHHHHHHHhhcCceeEEeeCCCCCC----CCCCcEEEEEeCCHHHHHHHHHHhCCceecC
Q 015292 274 QVKAVYVKNLPR--NV---TQDQLKKLFEHHGRITKVVVPPAKPG----QEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (409)
Q Consensus 274 ~~~~l~V~nLp~--~~---t~~~L~~~F~~~G~v~~v~i~~~~~~----~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g 344 (409)
++++|+|+|+-. .+ .+++|++.|++||.|.+|.|++++.+ ..++|+|||+|.+.++|.+|+..|||+.|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 358999999942 22 36899999999999999999988653 3457999999999999999999999999999
Q ss_pred eEEEEEecCC
Q 015292 345 QALECSLAKP 354 (409)
Q Consensus 345 ~~l~v~~a~~ 354 (409)
|.|+|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999875
No 360
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.1e-14 Score=108.23 Aligned_cols=85 Identities=25% Similarity=0.367 Sum_probs=72.6
Q ss_pred cCCCCCCeEEEcCCCCCCC-----------HHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhC
Q 015292 96 ALPPHGSEVYIGGIPHDAS-----------EHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN 164 (409)
Q Consensus 96 ~~~~~~~~l~v~nLp~~~t-----------~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~ 164 (409)
..|..+++|+|+||..... +++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|+..||
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 4567789999999954432 5799999999999999966 543 379999999999999999999999
Q ss_pred CCccCCceEEEeeccccccc
Q 015292 165 NTEFKGKKIRCSTSQAKYRL 184 (409)
Q Consensus 165 ~~~~~g~~l~v~~~~~~~~l 184 (409)
+..|.|+.|.|.++.+....
T Consensus 86 g~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp TCEETTEECEEEECCSCCCS
T ss_pred CCEECCcEEEEEEeCCCCCc
Confidence 99999999999998765443
No 361
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.54 E-value=4.3e-15 Score=110.90 Aligned_cols=73 Identities=18% Similarity=0.256 Sum_probs=63.5
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEE
Q 015292 280 VKNLPRNVTQDQLKKLF------------EHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQAL 347 (409)
Q Consensus 280 V~nLp~~~t~~~L~~~F------------~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l 347 (409)
+.||+..+++++|++.| ++||.|.+|.|+++..+ .++|||||+|.+.++|.+|+..|||+.|+||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~-~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGD-HLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSS-SSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCC-CccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45677777777776666 99999999999988764 569999999999999999999999999999999
Q ss_pred EEEecC
Q 015292 348 ECSLAK 353 (409)
Q Consensus 348 ~v~~a~ 353 (409)
+|.|+.
T Consensus 99 ~v~~sp 104 (104)
T 1jmt_A 99 HAELSP 104 (104)
T ss_dssp CEEECC
T ss_pred EEEEcC
Confidence 999873
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.53 E-value=1.4e-14 Score=123.66 Aligned_cols=79 Identities=20% Similarity=0.370 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCcc
Q 015292 98 PPHGSEVYIGGIPHDA---------SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~---------t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~ 168 (409)
....++|||+|||..+ ++++|+.+|++||.|.+|+|+.+ +|||||+|.+.++|..|++.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567999999999998 79999999999999999999864 89999999999999999999999999
Q ss_pred ------------CCceEEEeeccccc
Q 015292 169 ------------KGKKIRCSTSQAKY 182 (409)
Q Consensus 169 ------------~g~~l~v~~~~~~~ 182 (409)
.|+.|.|.++....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999997543
No 363
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.53 E-value=1.7e-14 Score=119.43 Aligned_cols=77 Identities=17% Similarity=0.360 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEeecc
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 179 (409)
..++|||+|||+++|+++|+++|++||.|..+ ..+|.++|||||+|.+.++|.+|+..|++..|.|+.|.|.++.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 46899999999999999999999999988766 4568999999999999999999999999999999999999987
Q ss_pred cc
Q 015292 180 AK 181 (409)
Q Consensus 180 ~~ 181 (409)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.52 E-value=3.5e-14 Score=106.07 Aligned_cols=81 Identities=22% Similarity=0.332 Sum_probs=71.2
Q ss_pred CCCeEEEcCC--CCCCC--------HHHHHHHHhccCCeeEEEEeeCCCC--CCceeeEEEEecCHHHHHHHHHHhCCCc
Q 015292 100 HGSEVYIGGI--PHDAS--------EHDLRDFCQSIGEVTEVRIMKGKDS--SENKGFAFVTFRNVELASKAIDKLNNTE 167 (409)
Q Consensus 100 ~~~~l~v~nL--p~~~t--------~~~l~~~f~~~G~v~~v~i~~~~~~--g~~~g~afV~F~~~~~A~~a~~~l~~~~ 167 (409)
+++.|.|.|+ |..+. +++|++.|++||.|.+|+|+++..+ ++++|+|||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5789999998 44443 3689999999999999999988754 4689999999999999999999999999
Q ss_pred cCCceEEEeeccc
Q 015292 168 FKGKKIRCSTSQA 180 (409)
Q Consensus 168 ~~g~~l~v~~~~~ 180 (409)
+.||.|+|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998764
No 365
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.5e-13 Score=101.08 Aligned_cols=66 Identities=24% Similarity=0.316 Sum_probs=58.6
Q ss_pred CCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCCCCc
Q 015292 285 RNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQAD 357 (409)
Q Consensus 285 ~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 357 (409)
..+++++|+++|++||.|..|.|+. .++|||||+|.+.++|.+|+..+++ +.|++|+|.|++++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 4689999999999999999999983 3489999999999999999998654 6899999999987654
No 366
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.49 E-value=1.3e-13 Score=104.08 Aligned_cols=79 Identities=11% Similarity=0.162 Sum_probs=67.7
Q ss_pred ccceEEEEcCCCCCC----------CHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCcee
Q 015292 273 SQVKAVYVKNLPRNV----------TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342 (409)
Q Consensus 273 ~~~~~l~V~nLp~~~----------t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~ 342 (409)
.++++|.+.|+-..- .+++|++.|++||.|.+|.|.++. ++|+|||+|.+.++|.+|+..|||+.|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 345899999994321 236889999999999999998764 379999999999999999999999999
Q ss_pred cCeEEEEEecCCC
Q 015292 343 DGQALECSLAKPQ 355 (409)
Q Consensus 343 ~g~~l~v~~a~~~ 355 (409)
+||.|+|.|+...
T Consensus 81 ~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 81 AGKMITAAYVPLP 93 (114)
T ss_dssp TTEECEEEEECHH
T ss_pred CCEEEEEEEEcHH
Confidence 9999999999754
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.48 E-value=8.7e-14 Score=105.84 Aligned_cols=81 Identities=25% Similarity=0.341 Sum_probs=71.5
Q ss_pred CCCeEEEcCCCC--C---CCHHHHHHHHhccCCeeEEEEeeCCC----CCCceeeEEEEecCHHHHHHHHHHhCCCccCC
Q 015292 100 HGSEVYIGGIPH--D---ASEHDLRDFCQSIGEVTEVRIMKGKD----SSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (409)
Q Consensus 100 ~~~~l~v~nLp~--~---~t~~~l~~~f~~~G~v~~v~i~~~~~----~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g 170 (409)
++++|+|.|+-. + -.+++|++.|++||.|.+|+|+++.. +++++|++||+|.+.++|.+|+..|||..|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 579999999942 2 24688999999999999999999864 46788999999999999999999999999999
Q ss_pred ceEEEeeccc
Q 015292 171 KKIRCSTSQA 180 (409)
Q Consensus 171 ~~l~v~~~~~ 180 (409)
|.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998764
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.48 E-value=1.9e-14 Score=107.37 Aligned_cols=72 Identities=29% Similarity=0.442 Sum_probs=62.9
Q ss_pred EcCCCCCCCHHHHHHHH------------hccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceE
Q 015292 106 IGGIPHDASEHDLRDFC------------QSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (409)
Q Consensus 106 v~nLp~~~t~~~l~~~f------------~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l 173 (409)
+.|||+.+++++|+++| ++||.|.+|+|+++.. ++++|||||+|.+.++|.+|+..|||..+.||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666677777776665 9999999999998765 7899999999999999999999999999999999
Q ss_pred EEeec
Q 015292 174 RCSTS 178 (409)
Q Consensus 174 ~v~~~ 178 (409)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.42 E-value=5.4e-13 Score=120.20 Aligned_cols=76 Identities=21% Similarity=0.388 Sum_probs=66.8
Q ss_pred CccceEEEEcC--CCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceec---Ce-
Q 015292 272 ASQVKAVYVKN--LPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD---GQ- 345 (409)
Q Consensus 272 ~~~~~~l~V~n--Lp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~---g~- 345 (409)
..++++|||+| |++.+|+++|+++|++||.|.+|.|++ +||||||+|.+.++|.+|+..|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45568999999 578999999999999999999998875 2699999999999999999999999883 45
Q ss_pred -EEEEEecC
Q 015292 346 -ALECSLAK 353 (409)
Q Consensus 346 -~l~v~~a~ 353 (409)
.|.|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 67888885
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.32 E-value=6.3e-12 Score=94.80 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=66.8
Q ss_pred CCCCCeEEEcCCCCCC----------CHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCc
Q 015292 98 PPHGSEVYIGGIPHDA----------SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~----------t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~ 167 (409)
|.+++.|.|.|+=... .+++|++.|++||.|.+|.|.++. ++|+|||+|.+.++|.+|+..|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4567889999984322 234689999999999999997653 58999999999999999999999999
Q ss_pred cCCceEEEeecc
Q 015292 168 FKGKKIRCSTSQ 179 (409)
Q Consensus 168 ~~g~~l~v~~~~ 179 (409)
|.||.|.|.++.
T Consensus 80 f~GR~i~v~~~~ 91 (114)
T 3s6e_A 80 FAGKMITAAYVP 91 (114)
T ss_dssp ETTEECEEEEEC
T ss_pred ECCEEEEEEEEc
Confidence 999999999875
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.4e-11 Score=90.52 Aligned_cols=74 Identities=20% Similarity=0.192 Sum_probs=62.4
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceE
Q 015292 101 GSEVYIGGIP-------HDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (409)
Q Consensus 101 ~~~l~v~nLp-------~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l 173 (409)
..+|.|.-.+ ..+++++|+++|++||.|..|.|+ ++++|||||+|.+.++|..|+..+ ..+.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~--~~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE--VGLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC--CBCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc--CCCCCCeE
Confidence 4566666654 458999999999999999999998 357999999999999999999864 44689999
Q ss_pred EEeecccc
Q 015292 174 RCSTSQAK 181 (409)
Q Consensus 174 ~v~~~~~~ 181 (409)
+|.++.+.
T Consensus 83 ~V~~a~~~ 90 (100)
T 2d9o_A 83 KISWLEGQ 90 (100)
T ss_dssp EEECSSCC
T ss_pred EEEEccCC
Confidence 99988754
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=1.2e-11 Score=86.92 Aligned_cols=74 Identities=27% Similarity=0.319 Sum_probs=63.5
Q ss_pred ccceEEEEcCCCC----CCCH----HHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecC
Q 015292 273 SQVKAVYVKNLPR----NVTQ----DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (409)
Q Consensus 273 ~~~~~l~V~nLp~----~~t~----~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g 344 (409)
++..+|+|..++. .+-. .+|.+.|++||.|..++|+.++ +||+|.+.++|.+|+. |||..++|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4456888887762 3333 6789999999999999999864 8999999999999998 99999999
Q ss_pred eEEEEEecCCC
Q 015292 345 QALECSLAKPQ 355 (409)
Q Consensus 345 ~~l~v~~a~~~ 355 (409)
|.|+|.++++.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999999874
No 373
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.31 E-value=4.5e-12 Score=114.18 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=65.5
Q ss_pred CCCCCeEEEcC--CCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccC---Cc-
Q 015292 98 PPHGSEVYIGG--IPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK---GK- 171 (409)
Q Consensus 98 ~~~~~~l~v~n--Lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~---g~- 171 (409)
..++++|||+| |++.+|+++|+++|++||.|.+|.+.. +||||||+|.+.++|.+|++.|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 55678999999 578999999999999999999988754 4799999999999999999999999873 55
Q ss_pred -eEEEeecc
Q 015292 172 -KIRCSTSQ 179 (409)
Q Consensus 172 -~l~v~~~~ 179 (409)
.|.|.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 56666653
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=2e-11 Score=91.93 Aligned_cols=77 Identities=16% Similarity=0.239 Sum_probs=69.3
Q ss_pred CccceEEEEcCCCCC-CCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCC-HHHHHHHHHHhC--CceecCeEE
Q 015292 272 ASQVKAVYVKNLPRN-VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE-RSSAMKALKNTE--KYELDGQAL 347 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~-~e~A~~A~~~l~--~~~~~g~~l 347 (409)
..++..|+|+||+.. ++.++|+++|+.||.|.+|.+.++. -.|||+|.+ ..+|..|+..|| +..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 445689999999999 9999999999999999999999986 479999999 899999999995 788999999
Q ss_pred EEEecCC
Q 015292 348 ECSLAKP 354 (409)
Q Consensus 348 ~v~~a~~ 354 (409)
++.+...
T Consensus 89 ~~evL~G 95 (121)
T 1owx_A 89 TWEVLEG 95 (121)
T ss_dssp EEEECCH
T ss_pred EEEECCC
Confidence 9987764
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=7.9e-11 Score=82.72 Aligned_cols=73 Identities=23% Similarity=0.320 Sum_probs=62.7
Q ss_pred CCCCeEEEcCCCC----CCCH----HHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCC
Q 015292 99 PHGSEVYIGGIPH----DASE----HDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (409)
Q Consensus 99 ~~~~~l~v~nLp~----~~t~----~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g 170 (409)
++..||+|.-+|. +.-. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+|++ |+|..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4567888888772 3333 5689999999999999999863 8999999999999997 99999999
Q ss_pred ceEEEeeccc
Q 015292 171 KKIRCSTSQA 180 (409)
Q Consensus 171 ~~l~v~~~~~ 180 (409)
|.|+|.++.+
T Consensus 76 r~LkV~lkt~ 85 (91)
T 2dnr_A 76 RTITIALKSP 85 (91)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 9999998764
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.1e-10 Score=87.89 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=66.6
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecC-HHHHHHHHHHhC--CCccCCceEE
Q 015292 99 PHGSEVYIGGIPHD-ASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRN-VELASKAIDKLN--NTEFKGKKIR 174 (409)
Q Consensus 99 ~~~~~l~v~nLp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~-~~~A~~a~~~l~--~~~~~g~~l~ 174 (409)
+.++.|+|+||+++ ++.++|+++|++||.|..|.+.++.. .|||.|.+ ..+|..|+..++ +..|.|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 45789999999999 99999999999999999999988743 69999999 899999999985 7788998888
Q ss_pred Eeecc
Q 015292 175 CSTSQ 179 (409)
Q Consensus 175 v~~~~ 179 (409)
+....
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 87654
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=1.3e-10 Score=81.92 Aligned_cols=74 Identities=20% Similarity=0.238 Sum_probs=63.2
Q ss_pred CccceEEEEcCCCCC-----CCH----HHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCcee
Q 015292 272 ASQVKAVYVKNLPRN-----VTQ----DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342 (409)
Q Consensus 272 ~~~~~~l~V~nLp~~-----~t~----~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~ 342 (409)
.++..+|+|..++.. +-. .+|.+.|++||.|..++|..++ +||+|.+.++|.+||. |||..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 445579999988743 322 5689999999999999999874 9999999999999999 999999
Q ss_pred cCeEEEEEecCC
Q 015292 343 DGQALECSLAKP 354 (409)
Q Consensus 343 ~g~~l~v~~a~~ 354 (409)
+||.|+|.+..+
T Consensus 83 ~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 83 KGRAVKISGPSS 94 (95)
T ss_dssp TTEEEEEECCCC
T ss_pred CCeEEEEeccCC
Confidence 999999998654
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=6.6e-10 Score=78.37 Aligned_cols=74 Identities=23% Similarity=0.328 Sum_probs=63.0
Q ss_pred CCCCCCeEEEcCCCCC-----CCH----HHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCc
Q 015292 97 LPPHGSEVYIGGIPHD-----ASE----HDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167 (409)
Q Consensus 97 ~~~~~~~l~v~nLp~~-----~t~----~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~ 167 (409)
.-|+..||+|.-++.+ +-. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+||+ |+|..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 3456789999998743 222 4689999999999999999873 9999999999999997 99999
Q ss_pred cCCceEEEeecc
Q 015292 168 FKGKKIRCSTSQ 179 (409)
Q Consensus 168 ~~g~~l~v~~~~ 179 (409)
+.||.|+|.+..
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999998754
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.95 E-value=1.2e-09 Score=93.85 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=60.5
Q ss_pred CCHHHHHHHHhhcCceeEEeeCCCCC----CCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecCC
Q 015292 287 VTQDQLKKLFEHHGRITKVVVPPAKP----GQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (409)
Q Consensus 287 ~t~~~L~~~F~~~G~v~~v~i~~~~~----~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 354 (409)
-.+++|++.|++||.|.++.|+++.. +..++|++||+|.+.++|.+|+..|||+.++||.|.|.|...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 35679999999999999999985543 346789999999999999999999999999999999999864
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.87 E-value=6.4e-09 Score=89.17 Aligned_cols=81 Identities=25% Similarity=0.341 Sum_probs=67.3
Q ss_pred CCCeEEEcCCC-----CCCCHHHHHHHHhccCCeeEEEEeeCCC----CCCceeeEEEEecCHHHHHHHHHHhCCCccCC
Q 015292 100 HGSEVYIGGIP-----HDASEHDLRDFCQSIGEVTEVRIMKGKD----SSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (409)
Q Consensus 100 ~~~~l~v~nLp-----~~~t~~~l~~~f~~~G~v~~v~i~~~~~----~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g 170 (409)
..+.+.+.|+- ..-.+++|++.|++||.|.++.|+++.. +++++|++||+|.+.++|.+|+..|+|..+.|
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g 202 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 202 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC
Confidence 34555565553 2345678999999999999999985543 45899999999999999999999999999999
Q ss_pred ceEEEeeccc
Q 015292 171 KKIRCSTSQA 180 (409)
Q Consensus 171 ~~l~v~~~~~ 180 (409)
|.|.+.+...
T Consensus 203 r~i~~~~~~~ 212 (222)
T 3dxb_A 203 RKVVAEVYDQ 212 (222)
T ss_dssp SBCEEEECCH
T ss_pred eEEEEEEcCH
Confidence 9999998763
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.82 E-value=2.3e-08 Score=71.79 Aligned_cols=71 Identities=13% Similarity=0.200 Sum_probs=66.8
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhc-----CceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHH-----GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~-----G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~ 350 (409)
++|-+-|||..++...|+.+..++ |.|..|.+..+. +=|+|+|.+...|.+|.-.|+|..|.||+|+|.
T Consensus 22 rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 789999999999999999999999 999999999986 679999999999999999999999999999996
Q ss_pred ec
Q 015292 351 LA 352 (409)
Q Consensus 351 ~a 352 (409)
-.
T Consensus 96 Tv 97 (117)
T 2l9w_A 96 TI 97 (117)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.58 E-value=2.5e-07 Score=66.44 Aligned_cols=72 Identities=22% Similarity=0.335 Sum_probs=66.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc-----CCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSI-----GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~-----G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 174 (409)
..++|-|-|||..++...|+.++.++ |.+..|.+..+ -+-|+|+|.+...|-+|.-.|+|..|.||+|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 47999999999999999999999999 99999999887 44699999999999999989999999999999
Q ss_pred Eee
Q 015292 175 CST 177 (409)
Q Consensus 175 v~~ 177 (409)
|..
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 964
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=6.9e-06 Score=58.63 Aligned_cols=86 Identities=19% Similarity=0.306 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc-----CCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSI-----GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~-----G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 174 (409)
..++|.|.|||..+.++.|.-+|+.- |+|..+.... +.|+|+|.+.+.|++.|+ ...+.|.+..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEE
Confidence 46899999999999999999999872 5898888753 479999999999999994 457889999999
Q ss_pred Eeeccc--ccccccCCCCCCCC
Q 015292 175 CSTSQA--KYRLFIGNIPRNWG 194 (409)
Q Consensus 175 v~~~~~--~~~l~v~~l~~~~~ 194 (409)
|....+ ..+|++.+|++.++
T Consensus 78 V~P~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCCCCCCCCCCSCCCCCC
T ss_pred EEcCCCCCcceEeeecCCCCCC
Confidence 977654 46899999998775
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.28 E-value=4.6e-06 Score=59.89 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=64.0
Q ss_pred eEEEEcCCCCCC-C----HHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015292 276 KAVYVKNLPRNV-T----QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (409)
Q Consensus 276 ~~l~V~nLp~~~-t----~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~ 350 (409)
++|+|.||+..+ . .+.++.+|..|+.+.....++.- .-..|.|.+.++|.+|...||+..|.|+.|+|.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 689999998766 2 25779999999998887777654 357899999999999999999999999999999
Q ss_pred ecCCC
Q 015292 351 LAKPQ 355 (409)
Q Consensus 351 ~a~~~ 355 (409)
|+.+.
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 99854
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=0.00051 Score=49.06 Aligned_cols=77 Identities=29% Similarity=0.335 Sum_probs=63.5
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhh-----cCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEH-----HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~-----~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~ 348 (409)
-.++|.|.|||..++++.|.-+|+. =|.|..|.... +-|+|+|.+...|.+.+.. ..+.|.+..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 3479999999999999999999976 25788888865 4699999999999999884 36689999999
Q ss_pred EEecCCCCccC
Q 015292 349 CSLAKPQADQK 359 (409)
Q Consensus 349 v~~a~~~~~~~ 359 (409)
|....+....+
T Consensus 78 V~P~~~~~~~r 88 (104)
T 2dhx_A 78 LRPAPPRAPAR 88 (104)
T ss_dssp EEECCCCCCCC
T ss_pred EEcCCCCCcce
Confidence 98766655443
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.79 E-value=0.00015 Score=51.19 Aligned_cols=79 Identities=11% Similarity=0.130 Sum_probs=61.7
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCC--CCcEEEEEeCCHHHHHHHHHHhCCceecC-----eEEE
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE--KNRIGFVHFAERSSAMKALKNTEKYELDG-----QALE 348 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~--~~g~afV~F~~~e~A~~A~~~l~~~~~~g-----~~l~ 348 (409)
++|.|++||+.+|++++.+.++.+..+........+.+.. .-.-|+|.|.+.+++..-...++|+.|-+ .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 5799999999999999999999998887777765553221 12469999999999999999999988742 2335
Q ss_pred EEecCC
Q 015292 349 CSLAKP 354 (409)
Q Consensus 349 v~~a~~ 354 (409)
|.+|.-
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 666643
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.78 E-value=3.9e-05 Score=55.11 Aligned_cols=74 Identities=22% Similarity=0.215 Sum_probs=63.3
Q ss_pred CCeEEEcCCCCCC-C----HHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 015292 101 GSEVYIGGIPHDA-S----EHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (409)
Q Consensus 101 ~~~l~v~nLp~~~-t----~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 175 (409)
.++|+|.||+..+ . ...++.+|..|+++......+.- +-.-|.|.++++|.+|...|++..+.|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4789999998765 2 25679999999999988887752 34799999999999999999999999999999
Q ss_pred eeccc
Q 015292 176 STSQA 180 (409)
Q Consensus 176 ~~~~~ 180 (409)
.++++
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 98873
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.75 E-value=0.00011 Score=51.94 Aligned_cols=69 Identities=20% Similarity=0.245 Sum_probs=57.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCC--ceeeEEEEecCHHHHHHHHHHhCCCccCC
Q 015292 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE--NKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (409)
Q Consensus 102 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g 170 (409)
+.|-|++||+.+|++++.+.+..+..+.....+..+.+.. ...-|||.|.+.+++....+.++|..|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4689999999999999999999999888877776654322 33569999999999999999999988753
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.36 E-value=0.0012 Score=48.89 Aligned_cols=71 Identities=17% Similarity=0.154 Sum_probs=58.1
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecC-eEEEEEecC
Q 015292 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG-QALECSLAK 353 (409)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g-~~l~v~~a~ 353 (409)
.+.|.|-+.|... ...|...|++||.|........ ..+-.|+|.+..+|++||. .||..|+| -.|-|....
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 4789999999885 6678889999999998887321 3689999999999999999 49999985 667777653
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.34 E-value=0.00064 Score=47.89 Aligned_cols=54 Identities=19% Similarity=0.350 Sum_probs=46.1
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~ 338 (409)
..++| +.|..+...||.++|++||.| .|+.+.| ..|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 67777 999999999999999999954 4666655 489999999999999999763
No 391
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.33 E-value=0.00077 Score=47.83 Aligned_cols=78 Identities=13% Similarity=0.127 Sum_probs=58.4
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCC--CCcEEEEEeCCHHHHHHHHHHhCCceecC-----eEEE
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE--KNRIGFVHFAERSSAMKALKNTEKYELDG-----QALE 348 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~--~~g~afV~F~~~e~A~~A~~~l~~~~~~g-----~~l~ 348 (409)
-+|.|+.||+.+|++++.+.++..-.+.....+..+.+.. .-.-|+|.|.+.++...-...++|..|-+ -+..
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~ 89 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAV 89 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeE
Confidence 5799999999999999999888876665555544442221 12458999999999999999999988742 3455
Q ss_pred EEecC
Q 015292 349 CSLAK 353 (409)
Q Consensus 349 v~~a~ 353 (409)
|.+|.
T Consensus 90 VE~AP 94 (97)
T 2l08_A 90 VEFAP 94 (97)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 66664
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.33 E-value=0.00078 Score=47.46 Aligned_cols=58 Identities=17% Similarity=0.351 Sum_probs=46.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhC
Q 015292 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN 164 (409)
Q Consensus 98 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~ 164 (409)
|.....++| ++|..+...||.++|+.||.| .|+-+-| ..|||.|.+++.|..|+..+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 334455666 999999999999999999955 4555554 279999999999999998663
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.15 E-value=0.00061 Score=48.18 Aligned_cols=54 Identities=19% Similarity=0.348 Sum_probs=46.4
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~ 338 (409)
..++| +.|..+...+|.++|++||.| .|+.+.| ..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 56777 999999999999999999953 5666665 489999999999999999764
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.11 E-value=0.0018 Score=47.97 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=57.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCC-ceEEEeec
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG-KKIRCSTS 178 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g-~~l~v~~~ 178 (409)
..+.|.|-+.|+.. ...|..+|++||.|.+..... ......|.|.+..+|++||. .||..|.| -.|-|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 45889999999985 667889999999999888622 24589999999999999995 79999875 55566654
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.90 E-value=0.001 Score=47.20 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=52.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCC--CceeeEEEEecCHHHHHHHHHHhCCCccCC
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS--ENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g--~~~g~afV~F~~~~~A~~a~~~l~~~~~~g 170 (409)
++-.|-|+.||+.+|++++.+.+..+-.+.....+..+.+- ..-.-|||.|.+.++.....+..+|..|.+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 35679999999999999988888776555443333332221 122459999999999999999999988743
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.78 E-value=0.0019 Score=45.70 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=43.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhC
Q 015292 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN 164 (409)
Q Consensus 104 l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~ 164 (409)
||+-++|..+...+|..+|+.||.| .|+-+-+ ..|||.|.+++.|..|+..+.
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSEEE-EEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEEeCChhhhhHHHHHHHhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 4444999999999999999999944 5666654 279999999999999998764
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.47 E-value=0.0054 Score=46.01 Aligned_cols=78 Identities=19% Similarity=0.211 Sum_probs=57.0
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeE-EeeCCCCC---------CC----CCCcEEEEEeCCHHHHHHHHHHhCCce
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVVPPAKP---------GQ----EKNRIGFVHFAERSSAMKALKNTEKYE 341 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~~~---------~~----~~~g~afV~F~~~e~A~~A~~~l~~~~ 341 (409)
.-|.|-+.|...+ ..+.+.|++||.|.. +.+.+... .. ....+..|+|.+..+|.+||. .||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 4688888877754 456678999999876 43332110 00 113678999999999999999 59999
Q ss_pred ecCeEEEEEecCCC
Q 015292 342 LDGQALECSLAKPQ 355 (409)
Q Consensus 342 ~~g~~l~v~~a~~~ 355 (409)
|+|..|-|....+.
T Consensus 86 i~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 86 FNGVLLGVIPYTKD 99 (132)
T ss_dssp ETTEECEEEECCHH
T ss_pred eCcEEEEEEECCHH
Confidence 99998888877643
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.77 E-value=0.0049 Score=57.51 Aligned_cols=55 Identities=15% Similarity=0.292 Sum_probs=42.2
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~ 336 (409)
++|+|. .|..+++.+|.++|++||.|.++.+..+. .-||.|+|.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 689997 79999999999999999999999988754 35999999999998877553
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.72 E-value=0.0058 Score=57.03 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=43.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHH
Q 015292 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161 (409)
Q Consensus 101 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~ 161 (409)
.++|+|. .|..+++.+|.++|++||+|.++.+..++ .-||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 4899997 79999999999999999999999998763 3699999999999997763
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.19 E-value=0.021 Score=42.84 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=55.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEE-EEee------------CCCCC-CceeeEEEEecCHHHHHHHHHHhCC
Q 015292 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEV-RIMK------------GKDSS-ENKGFAFVTFRNVELASKAIDKLNN 165 (409)
Q Consensus 100 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v-~i~~------------~~~~g-~~~g~afV~F~~~~~A~~a~~~l~~ 165 (409)
....|.|-+.|++.+. .|-..|++||.|..- .+.+ .+... .......|+|.++.+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 3567999999877654 577899999998652 1111 00000 023467899999999999995 799
Q ss_pred CccCCceEEEeecc
Q 015292 166 TEFKGKKIRCSTSQ 179 (409)
Q Consensus 166 ~~~~g~~l~v~~~~ 179 (409)
..|.|.-|-|.+..
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999988887765
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.68 E-value=1.2 Score=42.44 Aligned_cols=56 Identities=18% Similarity=0.327 Sum_probs=46.6
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 015292 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (409)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~ 338 (409)
....++|+ +|..+...+|.++|+.||.| .|+.+.+ ..|||.|.+.+.|..++..++
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 34677777 88899999999999999954 5666554 479999999999999999875
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.60 E-value=1.4 Score=41.82 Aligned_cols=55 Identities=16% Similarity=0.318 Sum_probs=44.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCC
Q 015292 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN 165 (409)
Q Consensus 102 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~ 165 (409)
..++|+ +|..+...+|.++|+.||.| +|+.+. ...|||.|.+.+.|..++..+..
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid-------dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID-------DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS-------SSEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc-------CCeEEEEECCHHHHHHHHHHHHh
Confidence 455555 99999999999999999954 555443 34799999999999999988753
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=73.50 E-value=8.4 Score=25.56 Aligned_cols=60 Identities=12% Similarity=0.197 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHhhcCc-----eeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEecC
Q 015292 285 RNVTQDQLKKLFEHHGR-----ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (409)
Q Consensus 285 ~~~t~~~L~~~F~~~G~-----v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 353 (409)
..+...+|..++..-+. |-.|.|.. .|.||+-.. ..|..++..|++..+.|+.+.|..++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 45566777777765443 55677754 478999854 56788999999999999999998764
No 404
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=70.86 E-value=0.86 Score=41.25 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=9.1
Q ss_pred CCCHHHHHHHHhhc
Q 015292 286 NVTQDQLKKLFEHH 299 (409)
Q Consensus 286 ~~t~~~L~~~F~~~ 299 (409)
.++.++|+++...+
T Consensus 228 ~vt~~~l~~i~~~i 241 (358)
T 2pk2_A 228 TVTLELLDELTHEF 241 (358)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 46777777766543
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=62.99 E-value=33 Score=23.33 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=48.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCC
Q 015292 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN 165 (409)
Q Consensus 99 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~ 165 (409)
...+.|.|-|+|..+-..++.-.....|---.|..+ .|.|.+.|.+.++-..|+..|-+
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHh
Confidence 346889999999999999988888888766566554 45799999999999999987644
No 406
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=62.40 E-value=34 Score=23.27 Aligned_cols=54 Identities=11% Similarity=0.131 Sum_probs=44.4
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHh
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l 337 (409)
+-|.|-|+|..+-..++--.....|---.+..+. |-|.|.|.+.++-.-|+..|
T Consensus 13 clikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred cEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 6788999999998888877778877655566553 67999999999999999876
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=56.49 E-value=12 Score=29.43 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=37.0
Q ss_pred eEEEEcCCCC-C--------CCHHHHHHHH--hhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHH
Q 015292 276 KAVYVKNLPR-N--------VTQDQLKKLF--EHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329 (409)
Q Consensus 276 ~~l~V~nLp~-~--------~t~~~L~~~F--~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~ 329 (409)
..+.|-|+|. . .+...|++.| +.|.++. |+.+.+..+. +|+|.|.|.+--.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh--~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGH--SGTAIVEFNKDWN 74 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBE--EEEEEEECCSSHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCC--ceeEEEEecCChH
Confidence 4678888887 2 3458999977 9998855 6666665554 4899999987543
No 408
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=49.37 E-value=52 Score=21.48 Aligned_cols=67 Identities=19% Similarity=0.337 Sum_probs=41.0
Q ss_pred eEEEcCC-CCCCCHHHHHHHHhccCC-----eeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHHHhCCCccCCceEEEe
Q 015292 103 EVYIGGI-PHDASEHDLRDFCQSIGE-----VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (409)
Q Consensus 103 ~l~v~nL-p~~~t~~~l~~~f~~~G~-----v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 176 (409)
+|||..= -..+...+|..++..-+. |-.|.|.. .|.||+-... .|..++..|++..+.|+.+.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 4555322 233677788888876543 56677643 3788887654 4677888899999999999887
Q ss_pred ec
Q 015292 177 TS 178 (409)
Q Consensus 177 ~~ 178 (409)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 65
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=41.80 E-value=60 Score=25.49 Aligned_cols=55 Identities=18% Similarity=0.162 Sum_probs=37.0
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHH--hccCCeeEEEEeeCCCCCCceeeEEEEecCHHH-HHHHH
Q 015292 103 EVYIGGIPH-D--------ASEHDLRDFC--QSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL-ASKAI 160 (409)
Q Consensus 103 ~l~v~nLp~-~--------~t~~~l~~~f--~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~-A~~a~ 160 (409)
.+.|-|+|. . .....|++.| +.|.++.-..+.-. ....|+|.|.|.+--. -..|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~---~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNY---LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECS---SBEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccC---CCCceeEEEEecCChHHHHHHH
Confidence 467888886 2 3456899977 99998764444433 3468999999986443 33344
No 410
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=28.88 E-value=79 Score=21.64 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=20.7
Q ss_pred CeeEEEEeeCCCCCCceeeEEEEec
Q 015292 127 EVTEVRIMKGKDSSENKGFAFVTFR 151 (409)
Q Consensus 127 ~v~~v~i~~~~~~g~~~g~afV~F~ 151 (409)
.|..|++.+-...|+-+++|-|.|.
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~d 29 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLD 29 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEEC
Confidence 4778888877667899999999985
No 411
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=25.80 E-value=1.3e+02 Score=18.92 Aligned_cols=54 Identities=13% Similarity=0.057 Sum_probs=41.1
Q ss_pred eEEEEcCCCCCCCHHHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 015292 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (409)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~ 336 (409)
.+|.|.++.-.-=...|...+.. ..|..+.+-.. .+.+.|.|.+.+....+|..
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHH
Confidence 57889999776667889999998 88888887554 36788998855666667765
No 412
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=25.21 E-value=96 Score=21.84 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=20.7
Q ss_pred CeeEEEEeeCCCCCCceeeEEEEec
Q 015292 127 EVTEVRIMKGKDSSENKGFAFVTFR 151 (409)
Q Consensus 127 ~v~~v~i~~~~~~g~~~g~afV~F~ 151 (409)
.|..|+|.+-...|+-++||-|.|.
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~d 29 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLD 29 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEEC
Confidence 4778888877666899999999985
No 413
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=24.86 E-value=1e+02 Score=21.97 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=20.5
Q ss_pred CeeEEEEeeCCCCCCceeeEEEEec
Q 015292 127 EVTEVRIMKGKDSSENKGFAFVTFR 151 (409)
Q Consensus 127 ~v~~v~i~~~~~~g~~~g~afV~F~ 151 (409)
.|..|+|.+-...|+-++||-|.|.
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~d 29 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLD 29 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEET
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEEC
Confidence 4777888777666899999999985
No 414
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.50 E-value=1.8e+02 Score=19.79 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=40.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-cC-CeeEEEEeeCCCCCCceeeEEEEecCHHHHHHHHH
Q 015292 103 EVYIGGIPHDASEHDLRDFCQS-IG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161 (409)
Q Consensus 103 ~l~v~nLp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~a~~ 161 (409)
.-++-.....++..+|++.++. || .|..|..+..+. ...-|||.+..-.+|.....
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~---~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR---GEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT---SCEEEEEEECTTSCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC---CceEEEEEcCCCCcHHHHHH
Confidence 3455567789999999999987 66 577777665432 24469999988777766543
No 415
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=22.50 E-value=19 Score=27.66 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=18.2
Q ss_pred HHHHHHHhhcCceeEEeeCCCCCCCCCCcEEEEEeC
Q 015292 290 DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325 (409)
Q Consensus 290 ~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~ 325 (409)
+++.++|...|.|..+... +||+||...
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~--------kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR--------MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT--------TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC--------CCeeEEeeC
Confidence 4556777778887766653 599999975
No 416
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=21.48 E-value=2e+02 Score=19.63 Aligned_cols=33 Identities=6% Similarity=0.145 Sum_probs=25.9
Q ss_pred eeEEeeCCCCCCCCCCcEEEEEeCCHHHHHHHHHHhCC
Q 015292 302 ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (409)
Q Consensus 302 v~~v~i~~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~ 339 (409)
|..+.++.. -.||.||++...++...+++.+.|
T Consensus 40 i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASES-----LKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCC
Confidence 666777643 269999999999988888887665
Done!