BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015293
(409 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 157/294 (53%), Gaps = 14/294 (4%)
Query: 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 174
+++G+PNVGKSTL N+++GQK+SI + K QTTRHRI+GI + YQ I DTPG+ ++
Sbjct: 12 AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK 71
Query: 175 HMLDSMMMKNVRSAGINADCIVVLVDACK-APERIDEI----LEEGVGDHKDKLPILLVL 229
++ +M K S+ + + ++ +V+ + P+ DE+ L EG K P++L +
Sbjct: 72 RAINRLMNKAASSSIGDVELVIFVVEGTRWTPD--DEMVLNKLREG------KAPVILAV 123
Query: 230 NKKDLIK-PGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKD 288
NK D ++ ++ L++ + +++P+SA+ G V+ I + LP ++P+D
Sbjct: 124 NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPED 183
Query: 289 IVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQX 348
+++ +RF EIIREK+ E+PY+ V + + + I I+VE+ Q
Sbjct: 184 YITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQK 243
Query: 349 XXXXXXXXXXXXXXXXXXRLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKHYGY 402
R D+++ + V+LE+ VKVK W DE L+ GY
Sbjct: 244 KMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERALRSLGY 297
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 162/295 (54%), Gaps = 7/295 (2%)
Query: 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIE-K 172
+++GKPNVGKSTL N ++G K+SI++ K TTR R+LG+ + P E Q+I DTPGI E K
Sbjct: 13 AIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPK 72
Query: 173 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKK 232
K +L M++ + + AD I+ ++DA + DE + + +K P+++V+NK
Sbjct: 73 KSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNK-PVIVVINKI 131
Query: 233 DLIKPGEIAKKL--EWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIV 290
D I P + L E ++K ++ E++P+SA G ++++ IL LP G +P+D++
Sbjct: 132 DKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPEDMI 191
Query: 291 SEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQV--EIVVEKNSQX 348
++ P R EI+REK M R EVP + V + K + + + EI+V++ +
Sbjct: 192 TDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDANPNMLVIKGEIIVDRENLK 251
Query: 349 XXXXXXXXXXXXXXXXXXRLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKHYGYG 403
R ++E L + VYLE+ VKV +WR+ ++ +GY
Sbjct: 252 PIIIGKKGQRLKEIGKRARQELELILGRPVYLELWVKVVPDWRRRPEYVRLFGYA 306
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 162/295 (54%), Gaps = 7/295 (2%)
Query: 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIE-K 172
+++GKPNVGKSTL N ++G K+SI++ K TTR R+LG+ + P E Q+I DTPGI E K
Sbjct: 14 AIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPK 73
Query: 173 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKK 232
K +L M++ + + AD I+ ++DA + DE + + +K P+++V+NK
Sbjct: 74 KSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNK-PVIVVINKI 132
Query: 233 DLIKPGEIAKKL--EWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIV 290
D I P + L E ++K ++ E++P+SA G ++++ IL LP G +P+D++
Sbjct: 133 DKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPEDMI 192
Query: 291 SEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQV--EIVVEKNSQX 348
++ P R EI+REK M R EVP + V + K + + + EI+V++ +
Sbjct: 193 TDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDANPNMLVIKGEIIVDRENLK 252
Query: 349 XXXXXXXXXXXXXXXXXXRLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKHYGYG 403
R ++E L + VYLE+ VKV +WR+ ++ +GY
Sbjct: 253 PIIIGKKGQRLKEIGKRARQELELILGRPVYLELWVKVVPDWRRRPEYVRLFGYA 307
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 155/290 (53%), Gaps = 14/290 (4%)
Query: 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 174
+++G+PNVGKSTL N+++GQK+SI + K QTTRHRI+GI + YQ I DTPG+ ++
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK 68
Query: 175 HMLDSMMMKNVRSAGINADCIVVLVDACK-APERIDEI----LEEGVGDHKDKLPILLVL 229
++ +M K S+ + + ++ +V+ + P+ DE+ L EG K P++L +
Sbjct: 69 RAINRLMNKAASSSIGDVELVIFVVEGTRWTPD--DEMVLNKLREG------KAPVILAV 120
Query: 230 NKKDLIK-PGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKD 288
NK D ++ ++ L++ + +++P+SA+ G V+ I + LP ++P+D
Sbjct: 121 NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPED 180
Query: 289 IVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQX 348
+++ +RF EIIREK+ E+PY+ V + + + I I+VE+ Q
Sbjct: 181 YITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQK 240
Query: 349 XXXXXXXXXXXXXXXXXXRLDIEDFLQKKVYLEIEVKVKENWRQDEGLLK 398
R D+++ + V+LE+ VKVK W DE L+
Sbjct: 241 KMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERALR 290
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 148/289 (51%), Gaps = 4/289 (1%)
Query: 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 174
+++GKPNVGKSTL N ++G K++ ++ +PQTTR R+ GI + Q++ DTPG + K +
Sbjct: 11 AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPG-LHKPM 69
Query: 175 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 234
L M + V A + + +V +VD P DE++ + K+PILLV NK D
Sbjct: 70 DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDA 129
Query: 235 IKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIV-SEH 293
K E A K Y + E +SA V +++ +L +P GP +YP+D S+
Sbjct: 130 AKYPEEAMKA--YHELLPEAEPRMLSALDERQVAELKADLLALMPEGPFFYPEDYAKSDQ 187
Query: 294 PERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQXXXXXX 353
+V EI+RE+ + +EVPYA V R +I+ + VE+ SQ
Sbjct: 188 TFGEWVAEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAILYVERPSQKAIVIG 247
Query: 354 XXXXXXXXXXXXXRLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKHYGY 402
R +E L KKVYL++EVKV +WR+D L+ GY
Sbjct: 248 EGGRKIKEIGQATRKQLEALLGKKVYLDLEVKVYPDWRKDPEALRELGY 296
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 89/177 (50%), Gaps = 13/177 (7%)
Query: 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 174
+++G PNVGK+T+ N + G + V N P T + GI E + ++ D PGI
Sbjct: 7 ALVGNPNVGKTTIFNALTGLRQH-VGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTA 65
Query: 175 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 234
H +D ++ +N G NAD IV +VD+ + LE + K+ I+LVLNK DL
Sbjct: 66 HSIDELIARNFILDG-NADVIVDIVDSTCLMRNLFLTLELFEMEVKN---IILVLNKFDL 121
Query: 235 IKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI-------LTKLPLGPAY 284
+K ++ K V VIP +AK G GVE+++ I +T P+ P Y
Sbjct: 122 LKKKGAKIDIKKMRKELGVP-VIPTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRY 177
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 25/169 (14%)
Query: 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 174
+++G+PNVGKST+ N++ G+++SIV + P TR RI Y L DT G I
Sbjct: 7 AIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGG-----I 61
Query: 175 HMLDSMMMKNVRS----AGINADCIVVLVDA----CKAPERIDEILEEGVGDHKDKLPIL 226
+ D + +R A AD I+ V+ A E + +IL ++ K P++
Sbjct: 62 DIGDEPFLAQIRQQAEIAXDEADVIIFXVNGREGVTAADEEVAKIL------YRTKKPVV 115
Query: 227 LVLNKKDLIKPGEIAKKLEWYEKFT-DVDEVIPVSAKYGHGVEDIRDWI 274
L +NK D + Y+ ++ E P+S +G G+ D+ D +
Sbjct: 116 LAVNKLD-----NTEXRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAV 159
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 175
++G+PNVGKS+L N +G++ IV+N TTR + + + + ++ DT G KK
Sbjct: 180 LIGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAG-XRKKGK 238
Query: 176 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVG-DHKDKLPILLVLNKKDL 234
+ ++ +V A D V+ E I E + G H+ +++V+NK D
Sbjct: 239 VYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDA 298
Query: 235 IKPGEIAKKLEWYEKFTD 252
+ E K E+ E D
Sbjct: 299 VDKDESTXK-EFEENIRD 315
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 25/169 (14%)
Query: 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 174
+++G+PNVGKST+ N++ G+++SIV + P TR RI Y L DT G I
Sbjct: 27 AIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGG-----I 81
Query: 175 HMLDSMMMKNVRS----AGINADCIVVLVDA----CKAPERIDEILEEGVGDHKDKLPIL 226
+ D + +R A AD I+ +V+ A E + +IL ++ K P++
Sbjct: 82 DIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKIL------YRTKKPVV 135
Query: 227 LVLNKKDLIKPGEIAKKLEWYEKFT-DVDEVIPVSAKYGHGVEDIRDWI 274
L +NK D + Y+ ++ E P+S +G G+ D+ D +
Sbjct: 136 LAVNKLD-----NTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAV 179
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 37/57 (64%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 172
++G+PNVGKS+L N M+G++ IV+N TTR + + + + ++ DT G+ +K
Sbjct: 200 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKK 256
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 12/171 (7%)
Query: 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI----I 170
+ +G+ NVGKS+L N + +K++ V+ P TR + + Y D PG +
Sbjct: 27 AFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYY---FVDLPGYGYAKV 83
Query: 171 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 230
KK ML ++++ + + +LVD P+ D ++ E + +P +VL
Sbjct: 84 SKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLN--IPFTIVLT 141
Query: 231 KKDLIKPGEIAKKLEWYEK-FTDVDE--VIPVSAKYGHGVEDIRDWILTKL 278
K D +K E AKKLE + K F+ E +IP S+ G G+ ++ D I T L
Sbjct: 142 KMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLL 192
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 86/163 (52%), Gaps = 13/163 (7%)
Query: 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEK 172
+++G+PNVGKS+L N +IVT+ P TTR + + G Q++ DT GI E
Sbjct: 228 AIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVL--DTAGIRET 285
Query: 173 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKK 232
++ + ++ R A AD +++ +DA D+ + E V H+ P++LV+NK
Sbjct: 286 S-DQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQV-KHR---PLILVMNKI 340
Query: 233 DLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275
DL++ ++ LE+ E T +++ +A G++ + IL
Sbjct: 341 DLVEK-QLITSLEYPENIT---QIVHTAAAQKQGIDSLETAIL 379
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 9/171 (5%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 175
+ G PNVGKSTL + K I + P TTR +G ++ + DTPG++++ I
Sbjct: 172 IAGHPNVGKSTLLKALTTAKPEIASY-PFTTRGINVGQFEDGYFRYQIIDTPGLLDRPIS 230
Query: 176 MLDSMMMKNVRSAGINADCIVVLVDA---CKAP-ERIDEILEEGVGDHKDKLPILLVLNK 231
+ + + + + + I+ + D C P E + EE G+ KD LP L+V+NK
Sbjct: 231 ERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKD-LPFLVVINK 289
Query: 232 KDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL-PLG 281
D+ I K+LE + K ++ I +SA G G++ +++ I+ L PL
Sbjct: 290 IDVADEENI-KRLEKFVKEKGLNP-IKISALKGTGIDLVKEEIIKTLRPLA 338
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 11/166 (6%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL-GICSGPEYQMILYDTPGIIEKKI 174
V G+ NVGKS+ N ++GQ +SIV++ TT + + P + L DTPG+ +
Sbjct: 39 VAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGL--DDV 96
Query: 175 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKD-KLPILLVLNKKD 233
L + ++ R ADC +++ D+ P D V K+ ++P ++V+NK D
Sbjct: 97 GELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDV-----VNLFKEMEIPFVVVVNKID 151
Query: 234 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 279
++ GE A++L+ + +V+ VSA G +DI I LP
Sbjct: 152 VL--GEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILP 195
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 4/163 (2%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 175
++G+PNVGKSTL N+++ +K +IV ++ TR + L DT G+ +
Sbjct: 6 IVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQD 65
Query: 176 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 235
++ + + AD ++ +VD + + DE L + + K + +LV NK + +
Sbjct: 66 IISQKXKEVTLNXIREADLVLFVVDGKRGITKEDESLADFL--RKSTVDTILVANKAENL 123
Query: 236 KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 278
+ E K E Y E IPVSA++ ++ + I+ KL
Sbjct: 124 REFEREVKPELYS--LGFGEPIPVSAEHNINLDTXLETIIKKL 164
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 14/164 (8%)
Query: 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEK 172
+++G+PNVGKSTL N ++ ++ ++V+ P TTR + G +Y + DT G+ K
Sbjct: 184 AIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY--VFVDTAGLRRK 241
Query: 173 -KIHMLDSMMMKNVRSAGI--NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVL 229
++ N R AD +V+++DA + R D+ G+ + + + + +V
Sbjct: 242 SRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RXAGLXERRGRASV-VVF 299
Query: 230 NKKDLI-----KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 268
NK DL+ + E K F D +I SA G ++
Sbjct: 300 NKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNID 343
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 84/161 (52%), Gaps = 11/161 (6%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKK 173
++GKPNVGKSTL N+++ + +IVT+ P TTR I + G ++++ DT G+ +
Sbjct: 248 IVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIV--DTAGVRSET 305
Query: 174 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 233
+++ + ++ AD ++ ++DA + D + E + + + L+V+NK D
Sbjct: 306 NDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKR----YLVVINKVD 361
Query: 234 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 274
++ E + E K ++ +SA G G+E + + I
Sbjct: 362 VV---EKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESI 399
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 10/159 (6%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 175
+ GKPN GKSTL N ++GQ+ +IV++ P TTR I + L DT G+ E
Sbjct: 238 IAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG-E 296
Query: 176 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP---ILLVLNKK 232
++ ++ R AD I+ L+D ER+D+ L E + + K P L V NK
Sbjct: 297 EIEHEGIRRSRMKMAEADLILYLLDL--GTERLDDELTE-IRELKAAHPAAKFLTVANKL 353
Query: 233 DLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 271
D + + T EVI +SA G G++ ++
Sbjct: 354 D--RAANADALIRAIADGTGT-EVIGISALNGDGIDTLK 389
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 23/168 (13%)
Query: 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEK 172
+++G PNVGKST+ N + G+ + I N P T + G +G +++++ D PG+
Sbjct: 11 ALIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVV--DLPGVYSL 67
Query: 173 KIHMLDSMMMKNVRSAGIN--ADCIVVLVDACKAPER----IDEILEEGVGDHKDKLPIL 226
+ +D ++ R IN D +V +VDA A ER +++E G +L
Sbjct: 68 TANSIDEII---ARDYIINEKPDLVVNIVDAT-ALERNLYLTLQLMEMGAN-------LL 116
Query: 227 LVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 274
L LNK DL K I ++ EK V +V+P+SA G+E+++ I
Sbjct: 117 LALNKMDLAKSLGIEIDVDKLEKILGV-KVVPLSAAKKMGIEELKKAI 163
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 23/168 (13%)
Query: 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEK 172
+++G PNVGKST+ N + G+ + I N P T + G +G +++++ D PG+
Sbjct: 7 ALIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVV--DLPGVYSL 63
Query: 173 KIHMLDSMMMKNVRSAGINA--DCIVVLVDACKAPER----IDEILEEGVGDHKDKLPIL 226
+ +D ++ R IN D +V +VDA A ER +++E G +L
Sbjct: 64 TANSIDEII---ARDYIINEKPDLVVNIVDAT-ALERNLYLTLQLMEMGAN-------LL 112
Query: 227 LVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 274
L LNK DL K I ++ EK V +V+P+SA G+E+++ I
Sbjct: 113 LALNKMDLAKSLGIEIDVDKLEKILGV-KVVPLSAAKKMGIEELKKAI 159
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 23/168 (13%)
Query: 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEK 172
+++G PNVGKST+ N + G+ + I N P T + G +G +++++ D PG+
Sbjct: 7 ALIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVV--DLPGVYSL 63
Query: 173 KIHMLDSMMMKNVRSAGINA--DCIVVLVDACKAPER----IDEILEEGVGDHKDKLPIL 226
+ +D ++ R IN D +V +VDA A ER +++E G +L
Sbjct: 64 TANSIDEII---ARDYIINEKPDLVVNIVDAT-ALERNLYLTLQLMEMGAN-------LL 112
Query: 227 LVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 274
L LNK DL K I ++ EK V +V+P+SA G+E+++ I
Sbjct: 113 LALNKMDLAKSLGIEIDVDKLEKILGV-KVVPLSAAKKMGIEELKKAI 159
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 23/168 (13%)
Query: 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEK 172
+++G PNVGKST+ N + G+ + I N P T + G +G +++++ D PG+
Sbjct: 8 ALIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVV--DLPGVYSL 64
Query: 173 KIHMLDSMMMKNVRSAGINA--DCIVVLVDACKAPER----IDEILEEGVGDHKDKLPIL 226
+ +D ++ R IN D +V +VDA A ER ++ E G +L
Sbjct: 65 TANSIDEII---ARDYIINEKPDLVVNIVDAT-ALERNLYLTLQLXEXGAN-------LL 113
Query: 227 LVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 274
L LNK DL K I ++ EK V +V+P+SA G+E+++ I
Sbjct: 114 LALNKXDLAKSLGIEIDVDKLEKILGV-KVVPLSAAKKXGIEELKKAI 160
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 19/173 (10%)
Query: 113 HKSVL-GKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI-- 169
HK V+ G+PNVGKS+L N+++ ++ ++V + P TR G+ + +L DT G+
Sbjct: 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWS 61
Query: 170 ---IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL 226
EKKI + V A +A+ ++ VD + D + E + + P++
Sbjct: 62 GDKWEKKIQ-------EKVDRALEDAEVVLFAVDGRAELTQADYEVAEYL--RRKGKPVI 112
Query: 227 LVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 279
LV K D K E+ + F D IP S+++ G+E++ + I +LP
Sbjct: 113 LVATKVDDPKH-ELYLGPLYGLGFGD---PIPTSSEHARGLEELLEAIWERLP 161
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 35/179 (19%)
Query: 108 ASHPNHKSVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTP 167
SH + G+PN GKS+L N + G++ +IVT+ TTR +L +
Sbjct: 1 GSHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD-------------VLREHI 47
Query: 168 GIIEKKIHMLDSMMMK----NVRSAGI--------NADCIVVLVDACKAPERID--EILE 213
I +H++D+ ++ V GI AD ++ +VD + +D EI
Sbjct: 48 HIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTT-DAVDPAEIWP 106
Query: 214 EGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 272
E + KLPI +V NK D+ GE E + +I +SA+ G GV+ +R+
Sbjct: 107 EFIARLPAKLPITVVRNKADI--TGETLGMSE-----VNGHALIRLSARTGEGVDVLRN 158
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 35/179 (19%)
Query: 108 ASHPNHKSVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTP 167
SH + G+PN GKS+L N + G++ +IVT+ TTR +L +
Sbjct: 1 GSHGXKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD-------------VLREHI 47
Query: 168 GIIEKKIHMLDSMMMK----NVRSAGI--------NADCIVVLVDACKAPERID--EILE 213
I +H++D+ ++ V GI AD ++ VD + +D EI
Sbjct: 48 HIDGXPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFXVDGTTT-DAVDPAEIWP 106
Query: 214 EGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 272
E + KLPI +V NK D+ GE E + +I +SA+ G GV+ +R+
Sbjct: 107 EFIARLPAKLPITVVRNKADIT--GETLGXSE-----VNGHALIRLSARTGEGVDVLRN 158
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 35/171 (20%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 175
+ G+PN GKS+L N + G++ +IVT+ TTR +L + I +H
Sbjct: 12 IAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD-------------VLREHIHIDGMPLH 58
Query: 176 MLDSMMMK----NVRSAGI--------NADCIVVLVDACKAPERID--EILEEGVGDHKD 221
++D+ ++ V GI AD ++ +VD + +D EI E +
Sbjct: 59 IIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTT-DAVDPAEIWPEFIARLPA 117
Query: 222 KLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 272
KLPI +V NK D+ GE E + +I +SA+ G GV+ +R+
Sbjct: 118 KLPITVVRNKADI--TGETLGMSE-----VNGHALIRLSARTGEGVDVLRN 161
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 110 HPNHKSVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 169
H ++ G PNVGK++L N + G K V N P T + G+ + Y + L D PG
Sbjct: 4 HMVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGT 62
Query: 170 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILE 213
+D + ++ G +AD ++++ D+ + + +LE
Sbjct: 63 YSLGYSSIDEKIARDYLLKG-DADLVILVADSVNPEQSLYLLLE 105
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 36/180 (20%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-------QMILYDTPG 168
++G N GK++L N + G +T K T ++ S Y +++L DT G
Sbjct: 184 IVGYTNSGKTSLFNSLTG-----LTQKVDT---KLFTTMSPKRYAIPINNRKIMLVDTVG 235
Query: 169 IIEK-KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEIL--------EEGVGDH 219
I ++D+ + S +D +++++D+ + + E L E GV
Sbjct: 236 FIRGIPPQIVDAFFV--TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGK 293
Query: 220 KDKLPILLVLNKKDLIKPGEIAKKLEWYEK-----FTDVDEVIPVSAKYGHGVEDIRDWI 274
PIL+ LNK D I G++ KKL+ EK ++ + +VIP+SA +E +RD I
Sbjct: 294 ----PILVTLNKIDKIN-GDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKI 348
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 110 HPNHKSVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 169
H ++ G PNVGK++L N + G K V N P T + G+ + Y + L D PG
Sbjct: 4 HXVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGT 62
Query: 170 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER 207
+D + ++ G +AD ++++ D+ PE+
Sbjct: 63 YSLGYSSIDEKIARDYLLKG-DADLVILVADSVN-PEQ 98
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 20/172 (11%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 175
++G N GK++L N + G + T T + I M++ P I
Sbjct: 184 IVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVPFIRGIPPQ 243
Query: 176 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEIL--------EEGVGDHKDKLPILL 227
++D+ + S +D +++++D+ + + E L E GV PIL+
Sbjct: 244 IVDAFFV--TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGK----PILV 297
Query: 228 VLNKKDLIKPGEIAKKLEWYEK-----FTDVDEVIPVSAKYGHGVEDIRDWI 274
LNK D I G++ KKL+ EK ++ + +VIP+SA +E +RD I
Sbjct: 298 TLNKIDKIN-GDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKI 348
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 14/124 (11%)
Query: 115 SVLGKPNVGKSTLANQMI-GQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 173
++LG +VGKS+L Q + GQ + + T +++ + +G EY + L DT G E
Sbjct: 8 AILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITV-NGQEYHLQLVDTAGQDEYS 66
Query: 174 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI---LEEGVGDHKDKLPILLVLN 230
I S IN +V V + K+ E I I L + VG K ++PI+LV N
Sbjct: 67 I-------FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG--KVQIPIMLVGN 117
Query: 231 KKDL 234
KKDL
Sbjct: 118 KKDL 121
>pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 12/115 (10%)
Query: 168 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER----IDEILEEGVGDHKDKL 223
G+IE +H + + +V N D V+LV K PE ID+ L V K++L
Sbjct: 65 GVIENVLHRKNLLTKPHV----ANVDQ-VILVVTVKMPETSTYIIDKFL---VLAEKNEL 116
Query: 224 PILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 278
++V+NK DL ++ K E E ++ + ++ SAK G G+E++++++ K+
Sbjct: 117 ETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKI 171
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 14/124 (11%)
Query: 115 SVLGKPNVGKSTLANQMI-GQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 173
++LG +VGKS+L Q + GQ + + T +++ + +G EY + L DT G E
Sbjct: 10 AILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV-NGQEYHLQLVDTAGQDEYS 68
Query: 174 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI---LEEGVGDHKDKLPILLVLN 230
I S IN +V V + K+ E I I L + VG K ++PI+LV N
Sbjct: 69 I-------FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG--KVQIPIMLVGN 119
Query: 231 KKDL 234
KKDL
Sbjct: 120 KKDL 123
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 110 HPNHKSVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 169
H ++ G PNVGK++L N + G K V N P T + G+ + Y + L D PG
Sbjct: 4 HMVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGT 62
Query: 170 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILE 213
+D + ++ G +AD ++++ D+ + + +LE
Sbjct: 63 YSLGYSSIDEKIARDYLLKG-DADLVILVADSVNPEQSLYLLLE 105
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 14/124 (11%)
Query: 115 SVLGKPNVGKSTLANQMI-GQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 173
++LG +VGKS+L Q + GQ + + T +++ + +G EY + L DT G E
Sbjct: 5 AILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV-NGQEYHLQLVDTAGQDEYS 63
Query: 174 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI---LEEGVGDHKDKLPILLVLN 230
I S IN +V V + K+ E I I L + VG K ++PI+LV N
Sbjct: 64 I-------FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG--KVQIPIMLVGN 114
Query: 231 KKDL 234
KKDL
Sbjct: 115 KKDL 118
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 14/124 (11%)
Query: 115 SVLGKPNVGKSTLANQMI-GQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 173
++LG +VGKS+L Q + GQ + + T +++ + +G EY + L DT G E
Sbjct: 10 AILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV-NGQEYHLQLVDTAGQDEYS 68
Query: 174 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI---LEEGVGDHKDKLPILLVLN 230
I S IN +V V + K+ E I I L + VG K ++PI+LV N
Sbjct: 69 I-------FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG--KVQIPIMLVGN 119
Query: 231 KKDL 234
KKDL
Sbjct: 120 KKDL 123
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 13/161 (8%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG-----II 170
++G PN GK+TL NQ+ G + V N T R G S ++Q+ L D PG I
Sbjct: 8 LIGNPNSGKTTLFNQLTGSRQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTI 66
Query: 171 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 230
+ + + + + S +AD ++ +VDA ++ L + + +P ++ LN
Sbjct: 67 SSQTSLDEQIACHYILSG--DADLLINVVDA----SNLERNLYLTLQLLELGIPCIVALN 120
Query: 231 KKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 271
D+ + I +++ VIP+ + G G+E ++
Sbjct: 121 XLDIAEKQNIRIEIDALSARLGC-PVIPLVSTRGRGIEALK 160
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 13/161 (8%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG-----II 170
++G PN GK+TL NQ+ G + V N T R GI + ++Q+ L D PG I
Sbjct: 8 LIGNPNSGKTTLFNQLTGARQR-VGNWAGVTVERKEGIFATTDHQVTLVDLPGTYSLTTI 66
Query: 171 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 230
+ + + + + S +AD ++ +VDA ++ L + + +P ++ LN
Sbjct: 67 SSQTSLDEQIACHYILSG--DADMLINVVDA----SNLERNLYLTLQLLELGIPCVVALN 120
Query: 231 KKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 271
D+ + ++ ++ VIP+ + G G+E ++
Sbjct: 121 MLDIAEKQQVRIDIDALAARLGC-PVIPLVSTRGRGIEALK 160
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 13/161 (8%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG-----II 170
++G PN GK+TL NQ+ G + V N T R G S ++Q+ L D PG I
Sbjct: 8 LIGNPNSGKTTLFNQLTGSRQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTI 66
Query: 171 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 230
+ + + + + S +AD ++ +VDA ++ L + + +P ++ LN
Sbjct: 67 SSQTSLDEQIACHYILSG--DADLLINVVDA----SNLERNLYLTLQLLELGIPCIVALN 120
Query: 231 KKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 271
D+ + I +++ VIP+ + G G+E ++
Sbjct: 121 MLDIAEKQNIRIEIDALSARLGC-PVIPLVSTRGRGIEALK 160
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 13/161 (8%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG-----II 170
++G PN GK+TL NQ+ G + V N T R G S ++Q+ L D PG I
Sbjct: 8 LIGNPNSGKTTLFNQLTGSRQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTI 66
Query: 171 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 230
+ + + + + S +AD ++ +VDA ++ L + + +P ++ LN
Sbjct: 67 SSQTSLDEQIACHYILSG--DADLLINVVDA----SNLERNLYLTLQLLELGIPCIVALN 120
Query: 231 KKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 271
D+ + I +++ VIP+ + G G+E ++
Sbjct: 121 MLDIAEKQNIRIEIDALSARLGC-PVIPLVSTRGRGIEALK 160
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 36/180 (20%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-------QMILYDTPG 168
++G N GK++L N + G +T K T ++ S Y +++L DT
Sbjct: 184 IVGYTNSGKTSLFNSLTG-----LTQKVDT---KLFTTMSPKRYAIPINNRKIMLVDTVS 235
Query: 169 IIEK-KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEIL--------EEGVGDH 219
I ++D+ + S +D +++++D+ + + E L E GV
Sbjct: 236 FIRGIPPQIVDAFFV--TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGK 293
Query: 220 KDKLPILLVLNKKDLIKPGEIAKKLEWYEK-----FTDVDEVIPVSAKYGHGVEDIRDWI 274
PIL+ LNK D I G++ KKL+ EK ++ + +VIP+SA +E +RD I
Sbjct: 294 ----PILVTLNKIDKIN-GDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKI 348
>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|B Chain B, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|C Chain C, Crystal Structure Of A Probable Gtp-binding Protein Engb
Length = 190
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 28/179 (15%)
Query: 118 GKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI-----IEK 172
G+ NVGKSTL ++ G+K+ +P TR +I+ I +++I D PG + K
Sbjct: 8 GRSNVGKSTLIYRLTGKKVR-RGKRPGVTR-KIIEI-EWKNHKII--DXPGFGFXXGLPK 62
Query: 173 KIH-MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGD---------HKDK 222
++ + ++ + N D V++VD APE I + G +
Sbjct: 63 EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 122
Query: 223 LPILLVLNKKDLIKPGE-----IAKKLEWYEKFTDVDEV-IPVSAKYGHGVEDIRDWIL 275
+P ++ +NK D IK + +A+K E +++D+V IP+SAK+G +E +++ I
Sbjct: 123 IPTIVAVNKLDKIKNVQEVINFLAEKFEV--PLSEIDKVFIPISAKFGDNIERLKNRIF 179
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 27/131 (20%)
Query: 159 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEG--- 215
Y++ L D PG + +++ V SA D +++VDA + P+ + G
Sbjct: 73 YRITLVDAPG---------HADLIRAVVSAADIIDLALIVVDAKEGPKT-----QTGEHM 118
Query: 216 -VGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT-------DVDEVIPVSAKYGHGV 267
+ DH + +PI++V+ K D EI K+ E K +IP+SAK G GV
Sbjct: 119 LILDHFN-IPIIVVITKSDNAGTEEI-KRTEMIMKSILQSTHNLKNSSIIPISAKTGFGV 176
Query: 268 EDIRDWILTKL 278
+++++ I+T L
Sbjct: 177 DELKNLIITTL 187
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 19/172 (11%)
Query: 112 NHKSVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 171
H ++G PN GK+TL N + V N P T + G E+ + + D PG+
Sbjct: 2 THALLIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYS 60
Query: 172 -----KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI---DEILEEGVGDHKDKL 223
+ I + + ++V + DCI+ ++DAC + ++ E G
Sbjct: 61 LVANAEGISQDEQIAAQSV--IDLEYDCIINVIDACHLERHLYLTSQLFELGK------- 111
Query: 224 PILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275
P+++ LN D+ + I+ E E VIP+ A G+ ++ +L
Sbjct: 112 PVVVALNMMDIAEHRGISIDTEKLESLLGCS-VIPIQAHKNIGIPALQQSLL 162
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 175
++G PNVGKSTL N++ + ++ ++P T + + G E + L DTPGI+ K
Sbjct: 125 IIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW-VKVGKELE--LLDTPGILWPKFE 181
Query: 176 MLDSMMMKNVRSAGINADCIVVLVDAC 202
D ++ + G D I+ L D
Sbjct: 182 --DELVGLRLAVTGAIKDSIINLQDVA 206
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 13/68 (19%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMI-----LYDTPGII 170
++G PN GKST+ N++ G++ S V +P GI G ++ + + DTPGI+
Sbjct: 104 IVGVPNTGKSTIINKLKGKRASSVGAQP--------GITKGIQWFSLENGVKILDTPGIL 155
Query: 171 EKKIHMLD 178
K I D
Sbjct: 156 YKNIFSED 163
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 80/166 (48%), Gaps = 21/166 (12%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 175
+LG N GK+TL Q+ + +S +T T I + S +++ ++D G+ + + +
Sbjct: 9 LLGLDNAGKTTLLKQLASEDISHIT---PTQGFNIKSVQS-QGFKLNVWDIGGLRKIRPY 64
Query: 176 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK----LPILLVLNK 231
RS N D ++ ++D+ +R +E +E +++ +P+L+ NK
Sbjct: 65 W---------RSYFENTDILIYVIDSADR-KRFEETGQELTELLEEEKLSCVPVLIFANK 114
Query: 232 KDLIKPG---EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 274
+DL+ EIA+ L + V ++ SA G GV+D +W+
Sbjct: 115 QDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 160
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 21/166 (12%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 175
+LG N GK+TL Q+ + +S +T T I + S +++ ++D G ++KI
Sbjct: 22 LLGLDNAGKTTLLKQLASEDISHIT---PTQGFNIKSVQS-QGFKLNVWDIGG--QRKIR 75
Query: 176 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK----LPILLVLNK 231
RS N D ++ ++D+ +R +E +E +++ +P+L+ NK
Sbjct: 76 -------PYWRSYFENTDILIYVIDSADR-KRFEETGQELTELLEEEKLSCVPVLIFANK 127
Query: 232 KDLIKPG---EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 274
+DL+ EIA+ L + V ++ SA G GV+D +W+
Sbjct: 128 QDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 173
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 21/166 (12%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 175
+LG N GK+TL Q+ + +S +T T I + S +++ ++D G ++KI
Sbjct: 21 LLGLDNAGKTTLLKQLASEDISHIT---PTQGFNIKSVQS-QGFKLNVWDIGG--QRKIR 74
Query: 176 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK----LPILLVLNK 231
RS N D ++ ++D+ +R +E +E +++ +P+L+ NK
Sbjct: 75 PY-------WRSYFENTDILIYVIDSADR-KRFEETGQELTELLEEEKLSCVPVLIFANK 126
Query: 232 KDLIKPG---EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 274
+DL+ EIA+ L + V ++ SA G GV+D +W+
Sbjct: 127 QDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 172
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 21/166 (12%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 175
+LG N GK+TL Q+ + +S +T T I + S +++ ++D G ++KI
Sbjct: 9 LLGLDNAGKTTLLKQLASEDISHIT---PTQGFNIKSVQS-QGFKLNVWDIGG--QRKIR 62
Query: 176 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK----LPILLVLNK 231
RS N D ++ ++D+ +R +E +E +++ +P+L+ NK
Sbjct: 63 -------PYWRSYFENTDILIYVIDSADR-KRFEETGQELTELLEEEKLSCVPVLIFANK 114
Query: 232 KDLIKPG---EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 274
+DL+ EIA+ L + V ++ SA G GV+D +W+
Sbjct: 115 QDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 160
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 175
+LG VGK++LA+Q + + S + + + E+ + L DT G E I
Sbjct: 29 ILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL 88
Query: 176 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI---LEEGVGDHKDKLPILLVLNKK 232
++ G++ +V V + + + I+ + L EG G K ++P++LV NK
Sbjct: 89 PYSFII-------GVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG--KTRVPVVLVGNKA 139
Query: 233 DLIKPGEI----AKKL--EWYEKFTD 252
DL E+ KKL W F +
Sbjct: 140 DLSPEREVQAVEGKKLAESWGATFME 165
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 12/76 (15%)
Query: 116 VLGKPNVGKSTLANQMIGQ---KLSIVTNK--PQTTRHRILGICSGP-EYQMILYDTPGI 169
V+G NVGKST N++I + K +++T P TT L + P E LYDTPGI
Sbjct: 167 VVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTT----LDMIEIPLESGATLYDTPGI 222
Query: 170 IE--KKIHMLDSMMMK 183
I + H +D+ +K
Sbjct: 223 INHHQMAHFVDARDLK 238
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 57/111 (51%), Gaps = 7/111 (6%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 175
V+GK VGKS+ N +IG+++ ++ ++ S + + + DTPG+IE
Sbjct: 44 VMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG--G 101
Query: 176 MLDSMMMKNVRSAGINADCIVVL----VDACKAPERIDEILEEGVGDHKDK 222
++ M + ++S ++ V+L +DA + + +D+++ + + D K
Sbjct: 102 YINDMALNIIKSFLLDKTIDVLLYVDRLDAYRV-DNLDKLVAKAITDSFGK 151
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH---RILGICSGP-EYQMILYDTPGII 170
V+G NVGKST N+ I ++ S T TT H L + P + + LYDTPGII
Sbjct: 165 VVGCTNVGKSTFINRXI-KEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGII 222
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 21/127 (16%)
Query: 117 LGKPNVGKSTLANQMIGQ-------KLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 169
+G P+VGKSTL +++ G + + + P R++ G + QM+ D PGI
Sbjct: 78 VGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYK------GAKIQML--DLPGI 129
Query: 170 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILE---EGVGDHKDKLPIL 226
I+ K V + + + +++D K P +I+E EGVG +K P
Sbjct: 130 IDGAKD--GRGRGKQVIAVARTCNLLFIILDVNK-PLHHKQIIEKELEGVGIRLNKTPPD 186
Query: 227 LVLNKKD 233
+++ KK+
Sbjct: 187 ILIKKKE 193
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 171
VLGK VGKS+ N +IG+++ V+ ++ + + + + DTPG++E
Sbjct: 41 VLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVE 96
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 171
VLGK VGKS+ N +IG+++ V+ ++ + + + + DTPG++E
Sbjct: 41 VLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVE 96
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 171
VLGK VGKS+ N +IG+++ V+ ++ + + + + DTPG++E
Sbjct: 41 VLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVE 96
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILGIC-SGPEYQMILYDTPGIIE 171
V GK VGKS+ N +IG++ +V+ P Q+ R + + S + + + DTPG+IE
Sbjct: 44 VXGKGGVGKSSTVNSIIGER--VVSISPFQSEGPRPVXVSRSRAGFTLNIIDTPGLIE 99
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 171
VLGK VGKS+ N +IG+++ V+ ++ + + + + DTPG++E
Sbjct: 40 VLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVE 95
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 116 VLGKPNVGKSTLANQMIG-QKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 174
+LG P VGK++LA+ G Q+ + + R L + G + +++ DT +
Sbjct: 9 LLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTV-DGEDTTLVVVDTW-----EA 62
Query: 175 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK-DKLPILLVLNKKD 233
LD + G +A IV + + E E+ + H+ D +PI+LV NK D
Sbjct: 63 EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122
Query: 234 LIKPGEIA 241
L + E++
Sbjct: 123 LARCREVS 130
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 12/130 (9%)
Query: 116 VLGKPNVGKSTLANQ---MIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 172
+LG+ VGKSTLA + G + N T RI+ E +I+YD +
Sbjct: 17 LLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIM--VDKEEVTLIVYDIWEQGDA 74
Query: 173 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDE-ILEEGVGDHKDKLPILLVLNK 231
+ D + +A IV V ++ ++ E +L G LP++LV NK
Sbjct: 75 GGWLQDHCLQTG------DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 128
Query: 232 KDLIKPGEIA 241
DL + E++
Sbjct: 129 SDLARSREVS 138
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 13/124 (10%)
Query: 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 174
+++G PN GK++L N + G V N P T R G+ + + + D PGI
Sbjct: 7 ALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKKNK-DLEIQDLPGIYSMSP 64
Query: 175 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERI---DEILEEGVGDHKDKLPILLVLNK 231
+ ++ + ++ + AD I+ +VDA + +++E G+ P+ + LN
Sbjct: 65 YSPEAKVARDYLLSQ-RADSILNVVDATNLERNLYLTTQLIETGI-------PVTIALNM 116
Query: 232 KDLI 235
D++
Sbjct: 117 IDVL 120
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 54/96 (56%), Gaps = 9/96 (9%)
Query: 110 HPNHKSVL--GKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYD 165
+P+ K+++ G PNVGKS+ N ++ + V + TT++ +G +YQ+I D
Sbjct: 26 NPHKKTIILSGAPNVGKSSFMN-IVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQII--D 82
Query: 166 TPGIIEKKIHMLDSMMMKNVRS-AGINADCIVVLVD 200
TPG++++ +++ M + + A IN I+ ++D
Sbjct: 83 TPGLLDRAFENRNTIEMTTITALAHING-VILFIID 117
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 35/179 (19%)
Query: 123 GKSTLANQMIGQKLSI--------------------VTNKPQTTRHRILGICSGPEYQMI 162
GKSTLA++++ +I +T K Q R G Y++
Sbjct: 18 GKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKXQAVRX-FYKAKDGNTYKLH 76
Query: 163 LYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK 222
L DTPG ++ V A + ++L+DA + E + + +
Sbjct: 77 LIDTPGHVD---------FSYEVSRALAACEGALLLIDASQGIEA--QTVANFWKAVEQD 125
Query: 223 LPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 279
L I+ V+NK DL + K++E D +E I SAK G G+E+I + I+ ++P
Sbjct: 126 LVIIPVINKIDLPSADVDRVKKQIEEVLGL-DPEEAILASAKEGIGIEEILEAIVNRIP 183
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Query: 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 174
+++G PN GK++L N + G V N P T R G+ + + + D PGI
Sbjct: 7 ALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKKNK-DLEIQDLPGIYSMSP 64
Query: 175 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERI---DEILEEGVGDHKDKLPILLVLNK 231
+ + + ++ + AD I+ +VDA + +++E G+ P+ + LN
Sbjct: 65 YSPEEKVARDYLLSQ-RADSILNVVDATNLERNLYLTTQLIETGI-------PVTIALNM 116
Query: 232 KDLI 235
D++
Sbjct: 117 IDVL 120
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 18/119 (15%)
Query: 156 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC--IVVLVDACKAPERIDEILE 213
G YQ+ DTPG ++ + S+ A C +++VDA + E + L
Sbjct: 68 GETYQLNFIDTPGHVDFSYEVSRSL-----------AACEGALLVVDAGQGVEA--QTLA 114
Query: 214 EGVGDHKDKLPILLVLNKKDL--IKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270
+ L ++ VLNK DL P +A+++E D + + SAK G GV+D+
Sbjct: 115 NCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGI-DATDAVRCSAKTGVGVQDV 172
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 18/119 (15%)
Query: 156 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC--IVVLVDACKAPERIDEILE 213
G YQ+ DTPG ++ + S+ A C +++VDA + E + L
Sbjct: 68 GETYQLNFIDTPGHVDFSYEVSRSL-----------AACEGALLVVDAGQGVEA--QTLA 114
Query: 214 EGVGDHKDKLPILLVLNKKDL--IKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270
+ L ++ VLNK DL P +A+++E D + + SAK G GV+D+
Sbjct: 115 NCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGI-DATDAVRCSAKTGVGVQDV 172
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 64/156 (41%), Gaps = 11/156 (7%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 175
V+G P VGKS L Q+I + +R + G + + DT G E
Sbjct: 8 VVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY--- 64
Query: 176 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEE--GVGDHKDKLPILLVLNKKD 233
S M G C V ++ K+ E I + E+ V D D +P++LV NK D
Sbjct: 65 ---SAMRDQYMRTGEGFLC-VFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCD 119
Query: 234 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269
L +++ + + + I SAK GVED
Sbjct: 120 LAARTVESRQAQDLARSYGI-PYIETSAKTRQGVED 154
>pdb|2CD9|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form
pdb|2CD9|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form
pdb|2CDA|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp
pdb|2CDA|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp
Length = 366
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 126 TLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML---DSMMM 182
T+ N + G IV K + + G ++ ++ ++ G++E+ H D +M
Sbjct: 33 TIYNGICGTDREIVNGKLTLST-----LPKGKDFLVLGHEAIGVVEESYHGFSQGDLVMP 87
Query: 183 KNVRSAGINADCIVVLVDACKAPE 206
N R GI +C+V D C+ E
Sbjct: 88 VNRRGCGICRNCLVGRPDFCETGE 111
>pdb|2CDB|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|C Chain C, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|D Chain D, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDC|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|C Chain C, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|D Chain D, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
Length = 366
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 126 TLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML---DSMMM 182
T+ N + G IV K + + G ++ ++ ++ G++E+ H D +M
Sbjct: 33 TIYNGICGADREIVNGKLTLST-----LPKGKDFLVLGHEAIGVVEESYHGFSQGDLVMP 87
Query: 183 KNVRSAGINADCIVVLVDACKAPE 206
N R GI +C+V D C+ E
Sbjct: 88 VNRRGCGICRNCLVGRPDFCETGE 111
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 12/130 (9%)
Query: 116 VLGKPNVGKSTLANQ---MIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 172
++G+ VGKSTLA + G + N T RI+ E +I+YD +
Sbjct: 7 LVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIM--VDKEEVTLIVYDIWEQGDA 64
Query: 173 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDE-ILEEGVGDHKDKLPILLVLNK 231
+ D + +A IV V ++ ++ E +L G LP++LV NK
Sbjct: 65 GGWLQDHCLQTG------DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 118
Query: 232 KDLIKPGEIA 241
DL + E++
Sbjct: 119 SDLARSREVS 128
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 17/180 (9%)
Query: 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 174
++G P+VGKSTL + + K I T + + + + D PG+IE
Sbjct: 162 GLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGXVETDDGRSFVXADLPGLIEGAH 221
Query: 175 H--MLDSMMMKNVRSAGINADCIVVLVDACKAPER--IDEIL--EEGVGDHKDKL---PI 225
L ++++ + IV ++D R D+ L + + ++ +L P
Sbjct: 222 QGVGLGHQFLRHIERTRV----IVHVIDXSGLEGRDPYDDYLTINQELSEYNLRLTERPQ 277
Query: 226 LLVLNKKDLIKPGEIAKKLEWY-EKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAY 284
++V NK D E A+ LE + EK TD V P+SA G+ ++ + +L P +
Sbjct: 278 IIVANKXDX---PEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPEF 334
>pdb|2YV5|A Chain A, Crystal Structure Of Yjeq From Aquifex Aeolicus
Length = 302
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 196 VVLVDACKAPERIDEILEEGVGDHKD-KLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVD 254
V++V+ K PE + +L+ + ++ K+ ++V NK DL+ E + W + D
Sbjct: 83 VIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142
Query: 255 -EVIPVSAKYGHGVEDIRDWI 274
+V+ VSAK G G++++ D++
Sbjct: 143 YDVLKVSAKTGEGIDELVDYL 163
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 64/156 (41%), Gaps = 11/156 (7%)
Query: 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 175
V+G P VGKS L Q+I + +R + G + + DT G E
Sbjct: 8 VVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY--- 64
Query: 176 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEE--GVGDHKDKLPILLVLNKKD 233
S M G C V ++ K+ E I + E+ V D D +P++LV NK D
Sbjct: 65 ---SAMRDQYMRTGEGFLC-VFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCD 119
Query: 234 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269
L +++ + + + I SAK GVED
Sbjct: 120 LAGRTVESRQAQDLARSYGI-PYIETSAKTRQGVED 154
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 35/179 (19%)
Query: 123 GKSTLANQMIGQKLSI--------------------VTNKPQTTRHRILGICSGPEYQMI 162
GKSTLA++++ +I +T K Q R G Y++
Sbjct: 18 GKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRM-FYKAKDGNTYKLH 76
Query: 163 LYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK 222
L DTPG ++ V A + ++L+DA + E + + +
Sbjct: 77 LIDTPGHVD---------FSYEVSRALAACEGALLLIDASQGIEA--QTVANFWKAVEQD 125
Query: 223 LPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 279
L I+ V+NK DL + K++E D +E I SAK G G+E+I + I+ ++P
Sbjct: 126 LVIIPVINKIDLPSADVDRVKKQIEEVLGL-DPEEAILASAKEGIGIEEILEAIVNRIP 183
>pdb|4AK7|A Chain A, Crystal Structure Of Bpgh117_e303q In Complex With
Neoagarobiose
pdb|4AK7|B Chain B, Crystal Structure Of Bpgh117_e303q In Complex With
Neoagarobiose
Length = 404
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 278 LPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTA 332
L +G YY S P + F G+I ++K+F R ++ YA + +++K + A
Sbjct: 97 LKIGDTYYVWYSKSYGPTQGFAGDIEKDKVFPWDRCDIWYATSKDGLTWKEQGIA 151
>pdb|4AK6|A Chain A, Bpgh117_h302e Mutant Glycoside Hydrolase
pdb|4AK6|B Chain B, Bpgh117_h302e Mutant Glycoside Hydrolase
Length = 404
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 278 LPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTA 332
L +G YY S P + F G+I ++K+F R ++ YA + +++K + A
Sbjct: 97 LKIGDTYYVWYSKSYGPTQGFAGDIEKDKVFPWDRCDIWYATSKDGLTWKEQGIA 151
>pdb|4AK5|A Chain A, Native Crystal Structure Of Bpgh117
pdb|4AK5|B Chain B, Native Crystal Structure Of Bpgh117
Length = 404
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 278 LPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTA 332
L +G YY S P + F G+I ++K+F R ++ YA + +++K + A
Sbjct: 97 LKIGDTYYVWYSKSYGPTQGFAGDIEKDKVFPWDRCDIWYATSKDGLTWKEQGIA 151
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 116 VLGKPNVGKSTLANQMIGQKL-SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 174
++GK GKS N ++G+K+ T T+ S E ++++ DTPGI + ++
Sbjct: 34 LVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEV 93
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 17/126 (13%)
Query: 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 174
+++G PN GK++L N + G V N P T R G+ + + + D PGI
Sbjct: 7 ALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKKNK-DLEIQDLPGIYSMSP 64
Query: 175 HMLDSMMMKNVRSAGIN--ADCIVVLVDACKAPERI---DEILEEGVGDHKDKLPILLVL 229
+ S K R ++ AD I+ +VDA + +++E G+ P+ + L
Sbjct: 65 Y---SPAEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGI-------PVTIAL 114
Query: 230 NKKDLI 235
N D++
Sbjct: 115 NMIDVL 120
>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
pdb|4DHE|B Chain B, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
Length = 223
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 118 GKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMI--LYDTPG 168
G+ N GKST N + QK L+ + P T+H I GP + + L D PG
Sbjct: 36 GRSNAGKSTAINVLCNQKRLAFASKTPGRTQH-INYFSVGPAAEPVAHLVDLPG 88
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 12/126 (9%)
Query: 113 HKSVL-GKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 171
HK ++ G VGKS L Q + + + +R + G E Q+ + DT G+ +
Sbjct: 8 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLED 67
Query: 172 KKIHMLDSMMMKNVRSAGINADCIVVLVD---ACKAPERIDEILEEGVGDHKDKLPILLV 228
+ + N +G + + + E ++IL V +DK+P+L+V
Sbjct: 68 Y------AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILR--VKAEEDKIPLLVV 119
Query: 229 LNKKDL 234
NK DL
Sbjct: 120 GNKSDL 125
>pdb|3CC2|C Chain C, The Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution With Rrna Sequence For The 23s Rrna And
Genome-Derived Sequences For R-Proteins
pdb|3CC4|C Chain C, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|3CC7|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2487u
pdb|3CCE|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535a
pdb|3CCJ|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2534u
pdb|3CCL|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535c. Density For Anisomycin Is
Visible But Not Included In Model.
pdb|3CCM|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2611u
pdb|3CCQ|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488u
pdb|3CCR|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488c. Density For Anisomycin Is
Visible But Not Included In The Model.
pdb|3CCS|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482a
pdb|3CCU|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482c
pdb|3CCV|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2616a
pdb|3CD6|C Chain C, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With
Cc-puromycin
pdb|3CPW|C Chain C, The Structure Of The Antibiotic Linezolid Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CMA|C Chain C, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CME|C Chain C, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
Ribosomal Subunit Of Haloarcula Marismortui
pdb|3G4S|C Chain C, Co-Crystal Structure Of Tiamulin Bound To The Large
Ribosomal Subunit
pdb|3G6E|C Chain C, Co-Crystal Structure Of Homoharringtonine Bound To The
Large Ribosomal Subunit
pdb|3G71|C Chain C, Co-crystal Structure Of Bruceantin Bound To The Large
Ribosomal Subunit
pdb|3I55|C Chain C, Co-Crystal Structure Of Mycalamide A Bound To The Large
Ribosomal Subunit
pdb|3I56|C Chain C, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
Large Ribosomal Subunit
pdb|4ADX|C Chain C, The Cryo-Em Structure Of The Archaeal 50s Ribosomal
Subunit In Complex With Initiation Factor 6
Length = 246
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 220 KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 266
+D++P+++ + +DL+K E+ LE + D+D K G G
Sbjct: 133 RDEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADETKIKAGQG 179
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 12/126 (9%)
Query: 113 HKSVL-GKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 171
HK ++ G VGKS L Q + + + +R + G E Q+ + DT G+ +
Sbjct: 4 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLED 63
Query: 172 KKIHMLDSMMMKNVRSAGINADCIVVLVD---ACKAPERIDEILEEGVGDHKDKLPILLV 228
+ + N +G + + + E ++IL V +DK+P+L+V
Sbjct: 64 Y------AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILR--VKAEEDKIPLLVV 115
Query: 229 LNKKDL 234
NK DL
Sbjct: 116 GNKSDL 121
>pdb|1JJ2|C Chain C, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|C Chain C, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
pdb|1K8A|E Chain E, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|E Chain E, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
pdb|1KD1|E Chain E, Co-crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|E Chain E, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|E Chain E, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1K73|E Chain E, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|1KC8|E Chain E, Co-Crystal Structure Of Blasticidin S Bound To The 50s
Ribosomal Subunit
pdb|1N8R|E Chain E, Structure Of Large Ribosomal Subunit In Complex With
Virginiamycin M
pdb|1NJI|E Chain E, Structure Of Chloramphenicol Bound To The 50s Ribosomal
Subunit
pdb|1Q7Y|E Chain E, Crystal Structure Of Ccdap-puromycin Bound At The Peptidyl
Transferase Center Of The 50s Ribosomal Subunit
pdb|1Q81|E Chain E, Crystal Structure Of Minihelix With 3' Puromycin Bound To
A- Site Of The 50s Ribosomal Subunit.
pdb|1Q82|E Chain E, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of
The 50s Ribosomal Subunit
pdb|1Q86|E Chain E, Crystal Structure Of Cca-Phe-Cap-Biotin Bound
Simultaneously At Half Occupancy To Both The A-Site And
P- Site Of The The 50s Ribosomal Subunit.
pdb|1QVF|C Chain C, Structure Of A Deacylated Trna Minihelix Bound To The E
Site Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1QVG|C Chain C, Structure Of Cca Oligonucleotide Bound To The Trna Binding
Sites Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1S72|C Chain C, Refined Crystal Structure Of The Haloarcula Marismortui
Large Ribosomal Subunit At 2.4 Angstrom Resolution
pdb|1W2B|C Chain C, Trigger Factor Ribosome Binding Domain In Complex With 50s
pdb|1YHQ|C Chain C, Crystal Structure Of Azithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YI2|C Chain C, Crystal Structure Of Erythromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIJ|C Chain C, Crystal Structure Of Telithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIT|C Chain C, Crystal Structure Of Virginiamycin M And S Bound To The
50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJ9|C Chain C, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
Haloarcula Marismortui Containing A Three Residue
Deletion In L22
pdb|1YJN|C Chain C, Crystal Structure Of Clindamycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJW|C Chain C, Crystal Structure Of Quinupristin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ4|C Chain C, The Structure Of The Transition State Analogue "daa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ5|C Chain C, The Structure Of The Transition State Analogue "raa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ6|C Chain C, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ7|C Chain C, The Structure Of The Transition State Analogue "dca" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ8|C Chain C, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQ9|C Chain C, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQK|C Chain C, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
The Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQL|C Chain C, The Structure Of The Transition State Analogue "dcsn"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQM|C Chain C, The Structure Of The Transition State Analogue "dan" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQN|C Chain C, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQO|C Chain C, The Structure Of Ccpmn Bound To The Large Ribosomal
Subunit Haloarcula Marismortui
pdb|1VQP|C Chain C, The Structure Of The Transition State Analogue "rap" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|2OTJ|C Chain C, 13-Deoxytedanolide Bound To The Large Subunit Of
Haloarcula Marismortui
pdb|2OTL|C Chain C, Girodazole Bound To The Large Subunit Of Haloarcula
Marismortui
pdb|2QA4|C Chain C, A More Complete Structure Of The The L7L12 STALK OF THE
Haloarcula Marismortui 50s Large Ribosomal Subunit
pdb|2QEX|C Chain C, Negamycin Binds To The Wall Of The Nascent Chain Exit
Tunnel Of The 50s Ribosomal Subunit
pdb|3CXC|C Chain C, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound
To The 50s Ribosomal Subunit Of H. Marismortui
pdb|3OW2|C Chain C, Crystal Structure Of Enhanced Macrolide Bound To 50s
Ribosomal Subunit
Length = 246
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 220 KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 266
+D++P+++ + +DL+K E+ LE + D+D K G G
Sbjct: 133 RDEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADETKIKAGQG 179
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Query: 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 174
+++G PN GK++L N + G V N P + R G+ + + + D PGI
Sbjct: 7 ALIGNPNSGKTSLFNLITGHNQR-VGNWPGVSVERKSGLVKKNK-DLEIQDLPGIYSMSP 64
Query: 175 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERI---DEILEEGVGDHKDKLPILLVLNK 231
+ + + ++ + AD I+ +VDA + +++E G+ P+ + LN
Sbjct: 65 YSPEEKVARDYLLSQ-RADSILNVVDATNLERNLYLTTQLIETGI-------PVTIALNM 116
Query: 232 KDLI 235
D++
Sbjct: 117 IDVL 120
>pdb|1FFK|C Chain C, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
pdb|1GIY|F Chain F, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
In The File 1gix
pdb|1ML5|FF Chain f, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
pdb|1YL3|F Chain F, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. Large Subunit. The Coordinates For The Small
Subunit Are In The Pdb Entry 1yl4.
pdb|2B66|F Chain F, 50s Ribosomal Subunit From A Crystal Structure Of Release
Factor Rf1, Trnas And Mrna Bound To The Ribosome. This
File Contains The 50s Subunit From A Crystal Structure
Of Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome And Is Described In Remark 400
pdb|2B9N|F Chain F, 50s Ribosomal Subunit From A Crystal Structure Of Release
Factor Rf2, Trnas And Mrna Bound To The Ribosome. This
File Contains The 50s Subunit From A Crystal Structure
Of Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome And Is Described In Remark 400.
pdb|2B9P|F Chain F, 50s Ribosomal Subunit From A Crystal Structure Of The
Ribosome In Complex With Trnas And Mrna With A Stop
Codon In The A-Site. This File Contains The 50s Subunit
From A Crystal Structure Of The Ribosome In Complex With
Trnas And Mrna With A Stop Codon In The A-Site And Is
Described In Remark 400
Length = 246
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 220 KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 266
+D++P+++ + +DL+K E+ LE + D+D K G G
Sbjct: 133 RDEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADETKIKAGQG 179
>pdb|3BD9|A Chain A, Human 3-O-Sulfotransferase Isoform 5 With Bound Pap
Length = 280
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 13/59 (22%)
Query: 250 FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIF 308
F D DE YG G+E W K+P YP+ I E +F+ E + E+I+
Sbjct: 59 FFDNDE------NYGKGIE----WYRKKMPFS---YPQQITIEKSPAYFITEEVPERIY 104
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 174
+++G PN GK++L N + G V N P R G+ + + + D PGI
Sbjct: 7 ALIGNPNSGKTSLFNLITGHNQR-VGNWPGVAVERKSGLVKKNK-DLEIQDLPGIYSMSP 64
Query: 175 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERI---DEILEEGVGDHKDKLPILLVLNK 231
+ + + ++ + AD I+ +VDA + +++E G+ P+ + LN
Sbjct: 65 YSPEEKVARDYLLSQ-RADSILNVVDATNLERNLYLTTQLIETGI-------PVTIALNM 116
Query: 232 KDLI 235
D++
Sbjct: 117 IDVL 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,741,393
Number of Sequences: 62578
Number of extensions: 459884
Number of successful extensions: 1413
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 1345
Number of HSP's gapped (non-prelim): 96
length of query: 409
length of database: 14,973,337
effective HSP length: 101
effective length of query: 308
effective length of database: 8,652,959
effective search space: 2665111372
effective search space used: 2665111372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)