Query 015293
Match_columns 409
No_of_seqs 547 out of 3954
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:57:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015293.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015293hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1159 Era GTPase [General fu 100.0 2.3E-70 4.9E-75 510.7 35.1 290 112-404 5-297 (298)
2 PRK15494 era GTPase Era; Provi 100.0 2.2E-60 4.8E-65 468.2 35.3 282 116-401 57-338 (339)
3 PRK00089 era GTPase Era; Revie 100.0 6.7E-59 1.4E-63 450.2 37.8 286 112-402 4-292 (292)
4 TIGR00436 era GTP-binding prot 100.0 1.6E-55 3.4E-60 421.9 33.7 266 116-385 5-270 (270)
5 KOG1423 Ras-like GTPase ERA [C 100.0 2.1E-49 4.6E-54 367.2 27.9 271 116-387 77-379 (379)
6 COG1160 Predicted GTPases [Gen 100.0 2.4E-32 5.2E-37 268.6 14.4 221 116-356 8-235 (444)
7 PRK12298 obgE GTPase CgtA; Rev 100.0 1.9E-27 4.2E-32 237.5 19.3 188 116-308 164-362 (390)
8 COG0486 ThdF Predicted GTPase 100.0 8.3E-28 1.8E-32 237.2 15.7 203 64-281 172-378 (454)
9 COG1160 Predicted GTPases [Gen 99.9 1.9E-23 4E-28 206.0 23.1 198 116-325 183-387 (444)
10 PF02421 FeoB_N: Ferrous iron 99.9 1.1E-24 2.4E-29 189.9 10.3 152 116-274 5-156 (156)
11 PRK03003 GTP-binding protein D 99.9 2.5E-23 5.4E-28 214.1 15.2 220 116-357 43-269 (472)
12 TIGR03594 GTPase_EngA ribosome 99.9 3E-23 6.4E-28 211.4 15.6 220 116-357 4-230 (429)
13 PRK09518 bifunctional cytidyla 99.9 1.1E-22 2.3E-27 218.8 18.4 222 116-357 280-508 (712)
14 cd01894 EngA1 EngA1 subfamily. 99.9 3E-22 6.5E-27 174.4 17.6 156 116-278 2-157 (157)
15 KOG1144 Translation initiation 99.9 2E-22 4.4E-27 204.8 16.9 209 116-365 480-748 (1064)
16 PRK05291 trmE tRNA modificatio 99.9 1.3E-22 2.8E-27 207.1 14.5 152 116-280 220-371 (449)
17 PRK00093 GTP-binding protein D 99.9 6E-22 1.3E-26 202.2 16.7 219 116-357 6-231 (435)
18 PRK03003 GTP-binding protein D 99.9 1.3E-20 2.8E-25 194.0 25.3 165 114-280 213-383 (472)
19 TIGR03594 GTPase_EngA ribosome 99.9 2.2E-20 4.7E-25 190.4 26.1 162 116-279 177-344 (429)
20 cd04163 Era Era subfamily. Er 99.9 6.2E-21 1.4E-25 166.7 18.8 160 116-278 8-168 (168)
21 PRK00093 GTP-binding protein D 99.9 3E-20 6.4E-25 189.8 26.7 162 116-279 178-344 (435)
22 TIGR03156 GTP_HflX GTP-binding 99.9 3.3E-21 7.1E-26 190.6 17.6 154 116-277 194-350 (351)
23 cd01897 NOG NOG1 is a nucleola 99.9 5.3E-21 1.1E-25 169.1 16.7 157 116-278 5-167 (168)
24 cd01898 Obg Obg subfamily. Th 99.9 2.5E-21 5.4E-26 171.4 14.2 159 116-278 5-170 (170)
25 PRK12299 obgE GTPase CgtA; Rev 99.9 4.2E-21 9.2E-26 188.4 16.4 159 116-280 163-329 (335)
26 cd04171 SelB SelB subfamily. 99.9 1.4E-20 3E-25 165.2 17.3 151 116-276 5-163 (164)
27 cd01895 EngA2 EngA2 subfamily. 99.9 3E-20 6.5E-25 164.0 18.9 160 116-277 7-173 (174)
28 PRK09518 bifunctional cytidyla 99.9 9.5E-20 2.1E-24 196.0 25.9 165 114-280 452-622 (712)
29 cd01879 FeoB Ferrous iron tran 99.9 8.6E-21 1.9E-25 165.6 14.5 156 116-278 1-156 (158)
30 TIGR00450 mnmE_trmE_thdF tRNA 99.9 5.9E-21 1.3E-25 194.0 14.5 152 116-278 208-359 (442)
31 KOG1191 Mitochondrial GTPase [ 99.9 4.4E-21 9.6E-26 189.1 12.8 162 116-278 273-449 (531)
32 cd04164 trmE TrmE (MnmE, ThdF, 99.8 4.6E-20 1E-24 160.3 17.0 151 116-278 6-156 (157)
33 PRK12296 obgE GTPase CgtA; Rev 99.8 2.3E-20 5E-25 190.1 17.1 160 116-280 164-341 (500)
34 cd01881 Obg_like The Obg-like 99.8 9E-21 1.9E-25 168.5 12.3 159 116-277 1-175 (176)
35 TIGR02729 Obg_CgtA Obg family 99.8 2.8E-20 6.1E-25 182.4 15.7 157 116-278 162-328 (329)
36 PLN03071 GTP-binding nuclear p 99.8 2E-19 4.2E-24 167.1 19.2 190 113-314 14-215 (219)
37 cd01861 Rab6 Rab6 subfamily. 99.8 1.3E-19 2.8E-24 159.0 16.8 152 116-278 5-161 (161)
38 PRK12297 obgE GTPase CgtA; Rev 99.8 6.6E-20 1.4E-24 184.4 16.7 161 116-283 163-331 (424)
39 cd01889 SelB_euk SelB subfamil 99.8 1.2E-19 2.5E-24 165.0 16.4 154 116-280 5-187 (192)
40 PRK11058 GTPase HflX; Provisio 99.8 9.3E-20 2E-24 184.3 17.4 158 116-279 202-362 (426)
41 PF00009 GTP_EFTU: Elongation 99.8 5.2E-20 1.1E-24 166.8 13.7 152 116-279 8-187 (188)
42 cd01878 HflX HflX subfamily. 99.8 2.5E-19 5.4E-24 164.1 18.0 156 116-278 46-204 (204)
43 cd00881 GTP_translation_factor 99.8 1.8E-19 3.9E-24 161.8 16.7 153 116-279 4-187 (189)
44 cd01890 LepA LepA subfamily. 99.8 2.1E-19 4.5E-24 160.7 16.7 152 116-279 5-177 (179)
45 cd04160 Arfrp1 Arfrp1 subfamil 99.8 1.5E-19 3.2E-24 159.7 15.3 152 116-276 4-166 (167)
46 cd04112 Rab26 Rab26 subfamily. 99.8 1.5E-19 3.1E-24 164.2 15.5 161 116-287 5-171 (191)
47 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 3.9E-19 8.4E-24 156.9 17.2 152 116-279 5-166 (168)
48 cd04158 ARD1 ARD1 subfamily. 99.8 2.6E-19 5.6E-24 159.2 15.9 155 116-283 4-165 (169)
49 COG0218 Predicted GTPase [Gene 99.8 6.8E-19 1.5E-23 157.0 18.3 159 116-279 29-197 (200)
50 PRK04213 GTP-binding protein; 99.8 5.4E-19 1.2E-23 161.4 18.2 157 116-280 14-193 (201)
51 cd01864 Rab19 Rab19 subfamily. 99.8 4.8E-19 1E-23 156.4 17.1 155 113-277 4-164 (165)
52 cd04154 Arl2 Arl2 subfamily. 99.8 4.5E-19 9.8E-24 158.1 16.5 150 114-276 16-172 (173)
53 cd04149 Arf6 Arf6 subfamily. 99.8 4.1E-19 8.9E-24 158.0 16.0 150 114-276 11-167 (168)
54 cd04136 Rap_like Rap-like subf 99.8 3.9E-19 8.5E-24 156.0 15.3 151 116-278 6-162 (163)
55 cd04138 H_N_K_Ras_like H-Ras/N 99.8 5.5E-19 1.2E-23 154.5 16.2 150 116-278 6-161 (162)
56 cd00880 Era_like Era (E. coli 99.8 6.4E-19 1.4E-23 152.1 16.0 158 116-277 1-162 (163)
57 PRK00454 engB GTP-binding prot 99.8 1.5E-18 3.2E-23 157.5 19.1 160 116-280 29-195 (196)
58 cd01860 Rab5_related Rab5-rela 99.8 9.2E-19 2E-23 153.8 17.1 152 116-278 6-162 (163)
59 smart00178 SAR Sar1p-like memb 99.8 5.9E-19 1.3E-23 159.4 16.3 152 113-277 18-183 (184)
60 cd04142 RRP22 RRP22 subfamily. 99.8 5.4E-19 1.2E-23 161.6 16.1 161 116-279 5-174 (198)
61 cd04145 M_R_Ras_like M-Ras/R-R 99.8 6.8E-19 1.5E-23 154.7 16.0 152 114-278 4-163 (164)
62 TIGR03598 GTPase_YsxC ribosome 99.8 7.9E-19 1.7E-23 157.7 16.6 148 116-268 23-179 (179)
63 smart00173 RAS Ras subfamily o 99.8 4.5E-19 9.6E-24 156.1 14.6 151 116-279 5-162 (164)
64 cd04166 CysN_ATPS CysN_ATPS su 99.8 3.8E-19 8.3E-24 163.8 14.7 154 116-287 4-195 (208)
65 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.5E-18 3.3E-23 158.1 18.1 141 116-267 7-171 (195)
66 cd04157 Arl6 Arl6 subfamily. 99.8 9.2E-19 2E-23 153.5 16.1 148 116-276 4-161 (162)
67 PRK09602 translation-associate 99.8 8.4E-19 1.8E-23 175.6 17.9 186 116-312 6-301 (396)
68 cd01865 Rab3 Rab3 subfamily. 99.8 7.5E-19 1.6E-23 155.4 15.3 152 116-278 6-162 (165)
69 cd01867 Rab8_Rab10_Rab13_like 99.8 8.4E-19 1.8E-23 155.4 15.7 154 114-278 5-164 (167)
70 cd01874 Cdc42 Cdc42 subfamily. 99.8 9.1E-19 2E-23 156.9 16.0 151 116-277 6-173 (175)
71 cd01866 Rab2 Rab2 subfamily. 99.8 7.9E-19 1.7E-23 155.8 15.1 154 114-278 6-165 (168)
72 cd04156 ARLTS1 ARLTS1 subfamil 99.8 1.6E-18 3.5E-23 151.9 16.3 149 116-276 4-159 (160)
73 COG1084 Predicted GTPase [Gene 99.8 1.1E-18 2.4E-23 165.2 16.1 162 114-279 171-336 (346)
74 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 1.2E-18 2.7E-23 153.8 15.6 151 116-278 7-163 (166)
75 cd04150 Arf1_5_like Arf1-Arf5- 99.8 2.2E-18 4.8E-23 151.8 17.0 148 116-276 5-158 (159)
76 cd01868 Rab11_like Rab11-like. 99.8 1.2E-18 2.7E-23 153.6 15.5 151 116-278 8-164 (165)
77 cd04140 ARHI_like ARHI subfami 99.8 1.2E-18 2.7E-23 154.0 15.5 150 116-277 6-163 (165)
78 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 2E-18 4.4E-23 154.3 16.9 151 113-276 16-173 (174)
79 cd01863 Rab18 Rab18 subfamily. 99.8 2.1E-18 4.6E-23 151.3 16.6 150 116-277 5-160 (161)
80 cd04119 RJL RJL (RabJ-Like) su 99.8 2.1E-18 4.4E-23 151.8 16.5 151 116-278 5-166 (168)
81 cd04151 Arl1 Arl1 subfamily. 99.8 1.8E-18 3.9E-23 151.8 16.0 148 116-276 4-157 (158)
82 PLN03118 Rab family protein; P 99.8 9.8E-19 2.1E-23 161.3 15.0 161 114-285 16-183 (211)
83 cd04175 Rap1 Rap1 subgroup. T 99.8 1.2E-18 2.5E-23 153.7 14.7 151 116-278 6-162 (164)
84 COG2262 HflX GTPases [General 99.8 1.1E-18 2.3E-23 170.0 15.3 159 116-281 197-358 (411)
85 smart00175 RAB Rab subfamily o 99.8 1.8E-18 4E-23 151.8 15.6 152 116-279 5-162 (164)
86 cd04122 Rab14 Rab14 subfamily. 99.8 1.6E-18 3.4E-23 153.4 15.1 150 116-278 7-163 (166)
87 cd04113 Rab4 Rab4 subfamily. 99.8 1.7E-18 3.6E-23 152.1 15.1 151 116-277 5-160 (161)
88 cd01893 Miro1 Miro1 subfamily. 99.8 2.1E-18 4.6E-23 152.7 15.9 152 116-278 5-163 (166)
89 cd00877 Ran Ran (Ras-related n 99.8 1.7E-18 3.7E-23 153.6 15.2 153 116-280 5-160 (166)
90 smart00174 RHO Rho (Ras homolo 99.8 1.3E-18 2.9E-23 154.7 14.5 152 116-278 3-171 (174)
91 cd04124 RabL2 RabL2 subfamily. 99.8 2.5E-18 5.4E-23 151.6 16.0 151 116-279 5-158 (161)
92 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 2.4E-18 5.2E-23 157.5 16.5 153 116-279 5-168 (201)
93 cd04120 Rab12 Rab12 subfamily. 99.8 3.1E-18 6.8E-23 156.9 16.8 153 115-279 4-163 (202)
94 cd04116 Rab9 Rab9 subfamily. 99.8 3.7E-18 8.1E-23 151.4 16.9 151 116-277 10-169 (170)
95 cd04134 Rho3 Rho3 subfamily. 99.8 1.6E-18 3.4E-23 157.2 14.8 153 116-279 5-174 (189)
96 smart00177 ARF ARF-like small 99.8 3E-18 6.5E-23 153.4 16.4 153 113-278 14-173 (175)
97 cd01891 TypA_BipA TypA (tyrosi 99.8 3.8E-18 8.2E-23 155.3 17.2 144 115-269 6-172 (194)
98 PLN00223 ADP-ribosylation fact 99.8 3.9E-18 8.4E-23 153.7 17.0 153 114-279 19-178 (181)
99 COG0532 InfB Translation initi 99.8 1.5E-17 3.3E-22 166.8 22.6 151 116-278 10-169 (509)
100 PRK15467 ethanolamine utilizat 99.8 2.1E-18 4.5E-23 152.1 14.5 142 116-279 6-147 (158)
101 cd04132 Rho4_like Rho4-like su 99.8 3.2E-18 7E-23 154.3 16.0 153 116-279 5-167 (187)
102 cd04176 Rap2 Rap2 subgroup. T 99.8 2.6E-18 5.6E-23 151.2 15.0 151 116-278 6-162 (163)
103 cd04144 Ras2 Ras2 subfamily. 99.8 1.4E-18 3.1E-23 157.5 13.6 152 116-279 4-163 (190)
104 cd00878 Arf_Arl Arf (ADP-ribos 99.8 3.3E-18 7.3E-23 149.7 15.5 148 116-276 4-157 (158)
105 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 3.8E-18 8.2E-23 153.9 16.2 155 116-279 8-170 (183)
106 TIGR02528 EutP ethanolamine ut 99.8 2.2E-18 4.8E-23 148.3 14.0 136 116-275 5-141 (142)
107 TIGR00231 small_GTP small GTP- 99.8 3.2E-18 7E-23 147.6 15.0 153 116-275 6-160 (161)
108 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 3E-18 6.6E-23 153.0 15.1 151 116-279 7-164 (172)
109 cd01888 eIF2_gamma eIF2-gamma 99.8 4.6E-18 9.9E-23 156.1 16.6 114 159-282 83-202 (203)
110 cd01862 Rab7 Rab7 subfamily. 99.8 6.2E-18 1.3E-22 149.7 16.7 153 116-279 5-167 (172)
111 cd00157 Rho Rho (Ras homology) 99.8 3.1E-18 6.6E-23 151.6 14.7 150 116-276 5-170 (171)
112 cd00154 Rab Rab family. Rab G 99.8 5.6E-18 1.2E-22 146.8 16.0 149 116-275 5-158 (159)
113 TIGR00491 aIF-2 translation in 99.8 7.6E-18 1.6E-22 176.1 19.9 149 116-277 9-214 (590)
114 cd04147 Ras_dva Ras-dva subfam 99.8 4.7E-18 1E-22 155.2 16.0 159 116-286 4-170 (198)
115 cd04101 RabL4 RabL4 (Rab-like4 99.8 6.6E-18 1.4E-22 148.6 16.4 152 116-278 5-163 (164)
116 cd04109 Rab28 Rab28 subfamily. 99.8 5E-18 1.1E-22 157.1 16.3 154 116-280 5-167 (215)
117 cd04128 Spg1 Spg1p. Spg1p (se 99.8 5.5E-18 1.2E-22 152.8 16.0 154 116-282 5-169 (182)
118 cd04125 RabA_like RabA-like su 99.8 3.9E-18 8.5E-23 154.2 15.1 154 116-279 5-162 (188)
119 cd00879 Sar1 Sar1 subfamily. 99.8 6.9E-18 1.5E-22 152.6 16.7 150 116-278 24-190 (190)
120 PTZ00369 Ras-like protein; Pro 99.8 4E-18 8.6E-23 154.5 15.0 154 113-279 6-167 (189)
121 cd01871 Rac1_like Rac1-like su 99.8 5.6E-18 1.2E-22 151.6 15.8 151 116-277 6-173 (174)
122 cd04133 Rop_like Rop subfamily 99.8 4.5E-18 9.8E-23 152.6 15.1 153 116-279 6-173 (176)
123 PRK05306 infB translation init 99.8 2.5E-18 5.5E-23 184.0 15.8 195 116-334 295-496 (787)
124 cd04106 Rab23_lke Rab23-like s 99.8 6.2E-18 1.4E-22 148.4 15.6 149 116-277 5-161 (162)
125 smart00176 RAN Ran (Ras-relate 99.8 6.4E-18 1.4E-22 154.7 16.1 165 117-293 1-176 (200)
126 cd04126 Rab20 Rab20 subfamily. 99.8 7E-18 1.5E-22 156.5 16.3 151 116-279 5-190 (220)
127 CHL00189 infB translation init 99.8 1.6E-17 3.5E-22 176.4 21.0 150 116-278 249-409 (742)
128 cd04135 Tc10 TC10 subfamily. 99.8 5.3E-18 1.2E-22 150.8 14.7 152 116-278 5-173 (174)
129 cd04123 Rab21 Rab21 subfamily. 99.8 8.9E-18 1.9E-22 146.8 15.8 151 116-278 5-161 (162)
130 PTZ00133 ADP-ribosylation fact 99.8 1.1E-17 2.4E-22 150.8 16.8 154 113-279 18-178 (182)
131 cd04121 Rab40 Rab40 subfamily. 99.8 8.5E-18 1.8E-22 152.5 16.0 153 113-279 7-167 (189)
132 KOG0092 GTPase Rab5/YPT51 and 99.8 4.3E-18 9.4E-23 149.4 13.5 156 116-282 10-170 (200)
133 cd04117 Rab15 Rab15 subfamily. 99.8 1.1E-17 2.3E-22 147.6 16.1 151 116-277 5-160 (161)
134 cd01875 RhoG RhoG subfamily. 99.8 7.5E-18 1.6E-22 153.1 15.4 153 116-279 8-177 (191)
135 cd04110 Rab35 Rab35 subfamily. 99.8 7.7E-18 1.7E-22 153.9 15.2 153 114-279 8-167 (199)
136 cd01870 RhoA_like RhoA-like su 99.8 9.1E-18 2E-22 149.5 15.3 154 114-278 3-174 (175)
137 cd04118 Rab24 Rab24 subfamily. 99.8 1.2E-17 2.5E-22 151.5 16.3 151 116-278 5-165 (193)
138 TIGR00437 feoB ferrous iron tr 99.8 5.4E-18 1.2E-22 178.2 16.0 154 118-278 1-154 (591)
139 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 1.1E-17 2.3E-22 149.2 15.5 153 116-280 5-166 (170)
140 PRK09554 feoB ferrous iron tra 99.8 7E-18 1.5E-22 181.4 16.7 157 116-279 8-168 (772)
141 cd04127 Rab27A Rab27a subfamil 99.8 1.1E-17 2.4E-22 149.7 15.4 151 116-278 9-176 (180)
142 KOG1489 Predicted GTP-binding 99.8 3.1E-18 6.7E-23 160.9 12.1 155 116-277 201-365 (366)
143 cd04131 Rnd Rnd subfamily. Th 99.8 1.3E-17 2.9E-22 149.8 15.6 150 116-276 6-173 (178)
144 cd04114 Rab30 Rab30 subfamily. 99.8 1.5E-17 3.3E-22 147.1 15.7 153 113-277 8-167 (169)
145 COG0370 FeoB Fe2+ transport sy 99.8 7.9E-18 1.7E-22 173.2 15.8 160 116-282 8-167 (653)
146 cd00876 Ras Ras family. The R 99.8 1.3E-17 2.9E-22 145.4 15.1 149 116-277 4-159 (160)
147 cd04139 RalA_RalB RalA/RalB su 99.8 1.5E-17 3.2E-22 145.9 15.4 150 116-278 5-161 (164)
148 PRK12317 elongation factor 1-a 99.8 4.4E-18 9.5E-23 173.2 13.6 144 116-269 11-195 (425)
149 TIGR00487 IF-2 translation ini 99.8 1.6E-17 3.4E-22 173.9 18.1 149 116-276 92-247 (587)
150 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 1.5E-17 3.3E-22 150.0 15.6 154 113-277 6-178 (182)
151 PF01926 MMR_HSR1: 50S ribosom 99.8 7.6E-18 1.6E-22 140.4 12.6 113 116-231 4-116 (116)
152 cd04130 Wrch_1 Wrch-1 subfamil 99.8 1.5E-17 3.2E-22 148.3 15.1 149 116-275 5-170 (173)
153 cd04177 RSR1 RSR1 subgroup. R 99.8 1.8E-17 3.8E-22 147.0 15.4 151 116-278 6-163 (168)
154 cd01892 Miro2 Miro2 subfamily. 99.8 1.1E-17 2.4E-22 148.9 14.1 153 116-279 9-166 (169)
155 cd01896 DRG The developmentall 99.8 1.7E-17 3.6E-22 155.5 15.6 153 116-279 5-226 (233)
156 TIGR01393 lepA GTP-binding pro 99.8 2E-17 4.3E-22 173.9 17.5 194 115-334 7-222 (595)
157 cd01886 EF-G Elongation factor 99.8 3.4E-17 7.3E-22 156.5 17.5 110 116-236 4-130 (270)
158 cd04159 Arl10_like Arl10-like 99.8 3.3E-17 7.1E-22 142.1 15.7 149 116-276 4-158 (159)
159 cd01899 Ygr210 Ygr210 subfamil 99.8 4.2E-17 9.1E-22 158.8 18.1 166 116-287 3-277 (318)
160 cd04143 Rhes_like Rhes_like su 99.8 2.3E-17 4.9E-22 155.9 15.8 152 116-279 5-171 (247)
161 cd04168 TetM_like Tet(M)-like 99.8 3.9E-17 8.5E-22 153.3 17.3 154 116-280 4-236 (237)
162 COG1163 DRG Predicted GTPase [ 99.8 7.3E-18 1.6E-22 159.1 12.2 153 116-278 68-288 (365)
163 cd04155 Arl3 Arl3 subfamily. 99.8 4.6E-17 1E-21 144.6 16.9 148 116-276 19-172 (173)
164 cd04161 Arl2l1_Arl13_like Arl2 99.7 4.3E-17 9.3E-22 144.7 16.6 148 116-276 4-166 (167)
165 PLN03110 Rab GTPase; Provision 99.7 2.2E-17 4.8E-22 153.0 15.3 155 114-279 14-174 (216)
166 PRK10512 selenocysteinyl-tRNA- 99.7 2.6E-17 5.5E-22 173.5 17.7 154 116-280 5-167 (614)
167 TIGR00475 selB selenocysteine- 99.7 2.5E-17 5.5E-22 173.0 17.5 154 116-280 5-167 (581)
168 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.7 3.6E-17 7.9E-22 152.7 16.3 155 113-278 14-187 (232)
169 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 1.3E-17 2.7E-22 152.2 12.6 171 116-288 5-194 (196)
170 cd01876 YihA_EngB The YihA (En 99.7 1.3E-16 2.8E-21 139.7 18.3 158 116-278 4-170 (170)
171 cd04111 Rab39 Rab39 subfamily. 99.7 5E-17 1.1E-21 150.1 16.1 155 114-279 4-166 (211)
172 cd04137 RheB Rheb (Ras Homolog 99.7 3.8E-17 8.3E-22 146.3 14.6 154 114-279 3-163 (180)
173 KOG1145 Mitochondrial translat 99.7 5.1E-17 1.1E-21 161.9 16.1 154 112-277 152-314 (683)
174 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.7 8.2E-17 1.8E-21 141.4 15.5 156 116-281 27-187 (221)
175 PRK12736 elongation factor Tu; 99.7 4.2E-17 9.1E-22 164.3 15.8 154 116-280 17-202 (394)
176 PF00025 Arf: ADP-ribosylation 99.7 9.2E-17 2E-21 143.9 16.1 152 113-277 15-174 (175)
177 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 4.3E-17 9.3E-22 144.4 13.7 147 116-276 4-163 (164)
178 CHL00071 tufA elongation facto 99.7 1.2E-16 2.5E-21 161.8 18.4 156 113-279 13-211 (409)
179 PLN03127 Elongation factor Tu; 99.7 8.7E-17 1.9E-21 163.8 17.4 153 116-279 66-252 (447)
180 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 1.2E-16 2.5E-21 148.5 16.3 152 116-278 6-175 (222)
181 KOG0084 GTPase Rab1/YPT1, smal 99.7 8.9E-17 1.9E-21 141.7 14.5 155 116-279 14-172 (205)
182 cd04115 Rab33B_Rab33A Rab33B/R 99.7 1.3E-16 2.8E-21 141.8 15.5 153 116-278 7-168 (170)
183 cd04165 GTPBP1_like GTPBP1-lik 99.7 2.2E-16 4.8E-21 146.9 17.5 150 116-276 4-220 (224)
184 PRK10218 GTP-binding protein; 99.7 4.8E-16 1E-20 163.1 22.1 195 116-334 10-237 (607)
185 cd04148 RGK RGK subfamily. Th 99.7 8.3E-17 1.8E-21 149.7 14.5 152 116-279 5-163 (221)
186 cd04146 RERG_RasL11_like RERG/ 99.7 4.7E-17 1E-21 143.7 12.3 151 116-278 4-163 (165)
187 PRK00007 elongation factor G; 99.7 5.5E-17 1.2E-21 174.2 15.1 110 116-236 15-141 (693)
188 PRK12739 elongation factor G; 99.7 4.3E-17 9.3E-22 175.0 14.3 110 116-236 13-139 (691)
189 PLN03108 Rab family protein; P 99.7 1.4E-16 3E-21 147.0 15.8 154 113-278 7-167 (210)
190 PRK05433 GTP-binding protein L 99.7 1.6E-16 3.5E-21 167.2 18.1 196 113-334 9-226 (600)
191 COG0536 Obg Predicted GTPase [ 99.7 5.7E-17 1.2E-21 154.3 12.9 161 116-281 164-335 (369)
192 PRK04004 translation initiatio 99.7 6.6E-16 1.4E-20 162.1 22.1 148 116-276 11-215 (586)
193 TIGR01394 TypA_BipA GTP-bindin 99.7 4.5E-16 9.8E-21 163.4 20.9 197 115-335 5-234 (594)
194 cd04169 RF3 RF3 subfamily. Pe 99.7 3.4E-16 7.3E-21 149.4 18.2 110 116-236 7-137 (267)
195 TIGR00484 EF-G translation elo 99.7 8.8E-17 1.9E-21 172.7 15.8 110 116-236 15-141 (689)
196 PRK00049 elongation factor Tu; 99.7 2.3E-16 4.9E-21 159.0 17.7 153 116-279 17-203 (396)
197 PRK12735 elongation factor Tu; 99.7 3.3E-16 7.1E-21 157.9 18.6 156 113-279 13-203 (396)
198 PF10662 PduV-EutP: Ethanolami 99.7 1.9E-16 4.1E-21 135.4 13.8 136 116-275 6-142 (143)
199 cd00882 Ras_like_GTPase Ras-li 99.7 2.6E-16 5.6E-21 134.0 14.3 149 116-275 1-156 (157)
200 cd04129 Rho2 Rho2 subfamily. 99.7 2.5E-16 5.5E-21 142.4 14.8 154 114-278 3-172 (187)
201 PRK00741 prfC peptide chain re 99.7 2.2E-16 4.7E-21 163.7 16.2 113 113-236 11-145 (526)
202 cd01883 EF1_alpha Eukaryotic e 99.7 1.7E-16 3.6E-21 147.5 13.5 143 116-268 4-194 (219)
203 TIGR00485 EF-Tu translation el 99.7 4.9E-16 1.1E-20 156.6 17.8 156 113-279 13-201 (394)
204 PRK09866 hypothetical protein; 99.7 5E-16 1.1E-20 159.4 17.5 115 159-277 230-351 (741)
205 KOG0462 Elongation factor-type 99.7 6.6E-16 1.4E-20 154.1 17.7 192 116-332 65-275 (650)
206 KOG0394 Ras-related GTPase [Ge 99.7 1.5E-16 3.3E-21 138.4 11.6 154 116-279 14-178 (210)
207 TIGR00503 prfC peptide chain r 99.7 3.4E-16 7.5E-21 162.3 15.6 109 116-235 16-145 (527)
208 PTZ00132 GTP-binding nuclear p 99.7 1.1E-15 2.4E-20 141.3 17.0 167 113-291 10-180 (215)
209 cd04170 EF-G_bact Elongation f 99.7 8.3E-16 1.8E-20 147.1 16.6 110 116-236 4-130 (268)
210 cd04103 Centaurin_gamma Centau 99.7 6.2E-16 1.3E-20 136.2 14.4 145 116-277 5-157 (158)
211 KOG1424 Predicted GTP-binding 99.7 5E-17 1.1E-21 161.3 7.4 151 13-175 217-375 (562)
212 cd01873 RhoBTB RhoBTB subfamil 99.7 7.8E-16 1.7E-20 140.4 14.8 150 116-277 7-194 (195)
213 TIGR03680 eif2g_arch translati 99.7 1.1E-15 2.3E-20 154.6 17.0 154 116-279 9-196 (406)
214 PLN03126 Elongation factor Tu; 99.7 8.5E-16 1.8E-20 157.4 16.2 152 116-278 86-279 (478)
215 TIGR00483 EF-1_alpha translati 99.7 1.2E-15 2.6E-20 155.4 15.4 144 116-269 12-197 (426)
216 KOG0098 GTPase Rab2, small G p 99.7 1E-15 2.2E-20 133.6 12.5 156 113-278 7-167 (216)
217 PF00071 Ras: Ras family; Int 99.7 1.6E-15 3.4E-20 133.2 13.8 150 116-278 4-160 (162)
218 TIGR02034 CysN sulfate adenyly 99.7 1.2E-15 2.5E-20 154.4 14.7 144 116-269 5-187 (406)
219 PRK04000 translation initiatio 99.7 2.7E-15 5.9E-20 151.7 17.1 158 113-280 10-202 (411)
220 PRK13351 elongation factor G; 99.7 1.2E-15 2.5E-20 164.3 14.8 110 116-236 13-139 (687)
221 PRK05124 cysN sulfate adenylyl 99.7 1.5E-15 3.3E-20 156.1 14.9 145 116-270 32-216 (474)
222 KOG0078 GTP-binding protein SE 99.6 2.4E-15 5.3E-20 134.4 13.9 152 116-279 17-174 (207)
223 PRK05506 bifunctional sulfate 99.6 1.9E-15 4.2E-20 161.0 14.1 144 116-269 29-211 (632)
224 cd01885 EF2 EF2 (for archaea a 99.6 9.8E-15 2.1E-19 135.5 16.0 109 116-235 5-138 (222)
225 PRK12740 elongation factor G; 99.6 1.2E-14 2.6E-19 156.0 18.9 109 117-236 1-126 (668)
226 KOG0073 GTP-binding ADP-ribosy 99.6 1.3E-14 2.8E-19 124.2 15.0 150 116-279 21-178 (185)
227 PTZ00327 eukaryotic translatio 99.6 8.5E-15 1.8E-19 149.2 16.0 155 116-280 39-234 (460)
228 COG3596 Predicted GTPase [Gene 99.6 9.2E-15 2E-19 135.8 14.2 166 113-280 41-223 (296)
229 PTZ00141 elongation factor 1- 99.6 1.1E-14 2.5E-19 148.5 15.7 151 116-277 12-223 (446)
230 cd04167 Snu114p Snu114p subfam 99.6 7.3E-15 1.6E-19 135.8 12.2 109 116-235 5-136 (213)
231 PRK09435 membrane ATPase/prote 99.6 1.2E-14 2.6E-19 141.9 13.8 179 116-315 61-296 (332)
232 KOG0080 GTPase Rab18, small G 99.6 8.5E-15 1.8E-19 124.7 11.0 155 116-284 16-179 (209)
233 KOG0075 GTP-binding ADP-ribosy 99.6 1.4E-14 3.1E-19 121.5 10.4 152 116-279 25-182 (186)
234 KOG0087 GTPase Rab11/YPT3, sma 99.6 1.8E-14 3.9E-19 128.5 10.8 153 116-278 19-175 (222)
235 KOG0095 GTPase Rab30, small G 99.6 3.6E-14 7.9E-19 119.3 11.2 152 116-278 12-168 (213)
236 COG0481 LepA Membrane GTPase L 99.6 4E-14 8.7E-19 139.4 13.4 192 116-333 14-227 (603)
237 KOG0070 GTP-binding ADP-ribosy 99.6 3.5E-14 7.5E-19 124.5 11.5 154 113-279 18-178 (181)
238 PRK14845 translation initiatio 99.6 1.8E-13 3.8E-18 150.1 19.7 145 122-278 472-672 (1049)
239 cd04104 p47_IIGP_like p47 (47- 99.5 6.5E-14 1.4E-18 127.9 13.4 156 116-280 6-185 (197)
240 COG5256 TEF1 Translation elong 99.5 1.3E-13 2.7E-18 134.7 16.0 144 116-269 12-201 (428)
241 KOG0079 GTP-binding protein H- 99.5 7E-14 1.5E-18 117.5 12.0 150 116-278 13-168 (198)
242 cd04105 SR_beta Signal recogni 99.5 1.6E-13 3.5E-18 125.9 15.4 112 115-237 4-124 (203)
243 KOG0086 GTPase Rab4, small G p 99.5 9.5E-14 2.1E-18 117.3 12.5 151 114-276 11-168 (214)
244 KOG1490 GTP-binding protein CR 99.5 1.9E-14 4.1E-19 142.4 7.5 157 116-274 173-336 (620)
245 PTZ00258 GTP-binding protein; 99.5 1.4E-13 3E-18 136.8 13.5 84 116-202 26-126 (390)
246 PLN00043 elongation factor 1-a 99.5 3.5E-13 7.6E-18 137.6 16.3 143 116-269 12-203 (447)
247 cd01882 BMS1 Bms1. Bms1 is an 99.5 6.1E-13 1.3E-17 124.0 15.4 131 116-265 44-182 (225)
248 COG1217 TypA Predicted membran 99.5 1.8E-12 4E-17 127.5 18.7 154 116-281 10-197 (603)
249 COG2229 Predicted GTPase [Gene 99.5 1.7E-12 3.8E-17 113.7 15.7 151 116-277 15-176 (187)
250 COG4108 PrfC Peptide chain rel 99.5 7.5E-13 1.6E-17 129.5 14.6 116 112-238 12-149 (528)
251 KOG0093 GTPase Rab3, small G p 99.5 4.6E-13 1E-17 112.5 11.3 153 114-278 23-182 (193)
252 PTZ00099 rab6; Provisional 99.5 5.5E-13 1.2E-17 119.6 12.6 116 156-282 26-145 (176)
253 cd01853 Toc34_like Toc34-like 99.5 1.2E-12 2.5E-17 123.7 14.8 126 113-238 32-165 (249)
254 KOG0088 GTPase Rab21, small G 99.5 7E-14 1.5E-18 118.8 5.2 153 116-278 18-174 (218)
255 PRK09601 GTP-binding protein Y 99.5 9.7E-13 2.1E-17 129.5 14.0 84 116-202 7-107 (364)
256 cd04102 RabL3 RabL3 (Rab-like3 99.4 2.2E-12 4.8E-17 118.2 15.1 138 116-265 5-176 (202)
257 cd01900 YchF YchF subfamily. 99.4 6.8E-13 1.5E-17 126.5 11.4 84 116-202 3-103 (274)
258 KOG0091 GTPase Rab39, small G 99.4 4.1E-13 8.9E-18 114.8 8.9 152 116-278 13-172 (213)
259 PRK13768 GTPase; Provisional 99.4 1.4E-12 3E-17 123.7 13.5 120 160-281 98-249 (253)
260 KOG0076 GTP-binding ADP-ribosy 99.4 3.6E-13 7.8E-18 116.4 8.6 157 116-281 22-189 (197)
261 PRK07560 elongation factor EF- 99.4 2.9E-13 6.2E-18 146.4 9.5 109 116-235 25-152 (731)
262 COG1100 GTPase SAR1 and relate 99.4 4.8E-12 1E-16 116.8 16.3 155 116-279 10-185 (219)
263 KOG0395 Ras-related GTPase [Ge 99.4 1.6E-12 3.4E-17 118.5 12.2 155 113-279 4-165 (196)
264 PF08477 Miro: Miro-like prote 99.4 6.1E-13 1.3E-17 110.7 8.1 109 116-233 4-119 (119)
265 KOG0071 GTP-binding ADP-ribosy 99.4 6.3E-12 1.4E-16 105.0 12.8 151 116-279 22-178 (180)
266 cd01850 CDC_Septin CDC/Septin. 99.4 2E-11 4.2E-16 117.3 16.9 124 116-242 9-163 (276)
267 TIGR00991 3a0901s02IAP34 GTP-b 99.4 9.6E-12 2.1E-16 119.5 14.0 123 113-237 39-168 (313)
268 COG0480 FusA Translation elong 99.4 1.2E-11 2.6E-16 131.1 16.0 110 116-236 15-142 (697)
269 COG3276 SelB Selenocysteine-sp 99.4 9.1E-12 2E-16 122.6 13.8 153 116-278 5-161 (447)
270 COG4917 EutP Ethanolamine util 99.4 6E-12 1.3E-16 103.3 10.3 139 116-277 6-144 (148)
271 KOG0410 Predicted GTP binding 99.4 2.4E-12 5.1E-17 121.7 8.9 152 116-279 183-341 (410)
272 KOG0083 GTPase Rab26/Rab37, sm 99.3 3.7E-13 8E-18 111.3 3.0 153 116-280 2-161 (192)
273 COG5257 GCD11 Translation init 99.3 1.2E-11 2.6E-16 116.9 13.4 159 116-284 15-207 (415)
274 PLN00116 translation elongatio 99.3 9.2E-12 2E-16 136.4 14.7 109 116-235 24-163 (843)
275 KOG0097 GTPase Rab14, small G 99.3 1.1E-11 2.3E-16 103.6 11.1 146 116-273 16-167 (215)
276 PTZ00416 elongation factor 2; 99.3 1E-11 2.2E-16 135.9 12.3 109 116-235 24-157 (836)
277 PLN00023 GTP-binding protein; 99.3 3.3E-11 7.1E-16 116.6 14.4 116 113-237 22-166 (334)
278 PF04548 AIG1: AIG1 family; I 99.3 9.3E-12 2E-16 115.0 9.1 165 115-282 4-189 (212)
279 KOG0461 Selenocysteine-specifi 99.3 6.5E-11 1.4E-15 112.7 14.6 153 116-279 12-193 (522)
280 KOG1486 GTP-binding protein DR 99.3 1.3E-11 2.8E-16 112.9 9.4 156 113-278 63-287 (364)
281 KOG0072 GTP-binding ADP-ribosy 99.3 9.5E-12 2.1E-16 104.4 7.6 151 116-279 23-179 (182)
282 KOG0081 GTPase Rab27, small G 99.3 9.8E-12 2.1E-16 105.9 7.8 153 116-278 14-180 (219)
283 KOG0393 Ras-related small GTPa 99.3 7.7E-12 1.7E-16 112.3 7.2 153 116-279 9-179 (198)
284 KOG0074 GTP-binding ADP-ribosy 99.3 2.6E-11 5.7E-16 101.4 9.8 152 116-279 22-179 (185)
285 KOG0458 Elongation factor 1 al 99.3 5.1E-11 1.1E-15 120.6 13.7 198 116-337 182-441 (603)
286 TIGR00490 aEF-2 translation el 99.2 1.8E-11 3.9E-16 132.2 9.5 110 116-236 24-152 (720)
287 cd01858 NGP_1 NGP-1. Autoanti 99.2 1.1E-11 2.3E-16 109.0 5.7 149 185-356 2-156 (157)
288 COG2895 CysN GTPases - Sulfate 99.2 6.9E-11 1.5E-15 113.1 10.5 144 116-269 11-193 (431)
289 TIGR00750 lao LAO/AO transport 99.2 2E-10 4.3E-15 111.7 13.4 104 158-279 126-238 (300)
290 PF03029 ATP_bind_1: Conserved 99.2 7.8E-11 1.7E-15 110.6 10.2 158 116-277 1-235 (238)
291 KOG0090 Signal recognition par 99.2 2.6E-10 5.6E-15 102.3 12.4 153 115-278 42-238 (238)
292 COG0012 Predicted GTPase, prob 99.2 1.6E-10 3.5E-15 112.4 11.6 83 116-203 7-109 (372)
293 TIGR02836 spore_IV_A stage IV 99.2 1.4E-10 3E-15 114.2 11.2 160 116-279 22-237 (492)
294 PF09439 SRPRB: Signal recogni 99.2 5.4E-11 1.2E-15 106.3 7.6 113 116-239 8-129 (181)
295 PF00350 Dynamin_N: Dynamin fa 99.2 2.1E-10 4.5E-15 101.4 11.2 110 116-232 3-168 (168)
296 COG0050 TufB GTPases - transla 99.2 3.2E-10 6.9E-15 106.1 12.6 155 116-281 17-203 (394)
297 KOG1487 GTP-binding protein DR 99.2 9.5E-11 2.1E-15 107.7 9.0 155 114-278 61-280 (358)
298 KOG3883 Ras family small GTPas 99.2 6.8E-10 1.5E-14 94.2 12.9 156 116-279 14-175 (198)
299 KOG1532 GTPase XAB1, interacts 99.2 1.1E-10 2.5E-15 108.1 8.9 123 159-285 116-270 (366)
300 TIGR00993 3a0901s04IAP86 chlor 99.2 4.3E-10 9.4E-15 116.5 14.1 121 116-237 123-251 (763)
301 PRK10463 hydrogenase nickel in 99.2 5E-11 1.1E-15 113.8 6.8 155 116-277 109-287 (290)
302 PF03308 ArgK: ArgK protein; 99.1 8.5E-11 1.8E-15 109.4 7.8 178 113-313 30-264 (266)
303 TIGR00073 hypB hydrogenase acc 99.1 1.8E-10 3.9E-15 106.0 9.4 81 192-278 124-206 (207)
304 KOG0465 Mitochondrial elongati 99.1 1E-10 2.2E-15 118.6 7.3 112 116-238 44-172 (721)
305 smart00053 DYNc Dynamin, GTPas 99.1 8.3E-10 1.8E-14 103.4 12.8 77 159-237 125-207 (240)
306 KOG0077 Vesicle coat complex C 99.1 1.7E-10 3.7E-15 99.2 7.3 149 116-277 25-191 (193)
307 KOG1707 Predicted Ras related/ 99.1 8.4E-10 1.8E-14 111.8 11.1 152 116-278 14-174 (625)
308 PF04670 Gtr1_RagA: Gtr1/RagA 99.0 3E-09 6.5E-14 99.1 13.2 159 116-279 4-176 (232)
309 COG1703 ArgK Putative periplas 99.0 2E-09 4.2E-14 101.7 11.6 149 113-279 52-254 (323)
310 COG0378 HypB Ni2+-binding GTPa 99.0 2.7E-09 5.8E-14 95.1 11.5 78 194-278 120-200 (202)
311 cd01858 NGP_1 NGP-1. Autoanti 99.0 9.3E-10 2E-14 96.6 6.4 53 114-169 104-157 (157)
312 cd04178 Nucleostemin_like Nucl 99.0 9.2E-10 2E-14 98.3 6.0 51 116-169 122-172 (172)
313 TIGR03596 GTPase_YlqF ribosome 98.9 1.8E-09 4E-14 103.7 7.8 157 181-357 11-173 (276)
314 KOG4252 GTP-binding protein [S 98.9 2E-10 4.4E-15 99.8 0.8 148 116-278 25-180 (246)
315 cd01859 MJ1464 MJ1464. This f 98.9 5.4E-09 1.2E-13 91.5 9.7 90 187-280 8-97 (156)
316 KOG0096 GTPase Ran/TC4/GSP1 (n 98.9 2E-09 4.3E-14 94.7 6.5 155 116-282 15-172 (216)
317 PF00735 Septin: Septin; Inte 98.9 3.9E-08 8.6E-13 94.5 15.5 129 116-247 9-167 (281)
318 TIGR00101 ureG urease accessor 98.9 1.3E-08 2.8E-13 93.1 11.4 81 192-278 113-195 (199)
319 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 2.2E-09 4.8E-14 92.6 5.8 82 183-266 3-84 (141)
320 KOG2486 Predicted GTPase [Gene 98.9 5.8E-09 1.3E-13 97.3 7.9 159 115-278 140-315 (320)
321 COG1161 Predicted GTPases [Gen 98.8 3.2E-09 6.9E-14 104.1 5.6 55 116-173 137-191 (322)
322 cd01856 YlqF YlqF. Proteins o 98.8 1.8E-08 3.8E-13 89.9 9.9 93 181-279 9-101 (171)
323 KOG1673 Ras GTPases [General f 98.8 1.8E-08 3.8E-13 85.9 9.2 162 116-288 25-195 (205)
324 KOG0467 Translation elongation 98.8 2.5E-08 5.4E-13 103.7 12.0 110 115-235 13-137 (887)
325 PF05049 IIGP: Interferon-indu 98.8 1.5E-08 3.3E-13 100.1 9.9 157 116-281 40-220 (376)
326 KOG0460 Mitochondrial translat 98.8 4.5E-08 9.8E-13 93.5 12.4 154 116-280 59-246 (449)
327 PRK09563 rbgA GTPase YlqF; Rev 98.8 3.7E-09 8E-14 102.2 5.3 92 182-279 15-106 (287)
328 cd01855 YqeH YqeH. YqeH is an 98.8 2.1E-08 4.4E-13 90.9 9.5 95 181-279 24-125 (190)
329 COG5258 GTPBP1 GTPase [General 98.8 4.6E-08 1E-12 94.8 12.0 109 160-280 202-339 (527)
330 PF07650 KH_2: KH domain syndr 98.8 6.8E-09 1.5E-13 80.2 4.3 53 338-391 26-78 (78)
331 KOG1491 Predicted GTP-binding 98.8 5.2E-08 1.1E-12 93.2 10.9 83 116-203 25-126 (391)
332 cd01849 YlqF_related_GTPase Yl 98.8 3.8E-08 8.3E-13 86.2 9.4 83 193-278 1-84 (155)
333 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1.2E-08 2.7E-13 87.9 6.0 52 116-170 88-139 (141)
334 KOG1954 Endocytosis/signaling 98.7 9.1E-08 2E-12 92.3 11.9 125 116-242 63-231 (532)
335 cd01849 YlqF_related_GTPase Yl 98.7 1.5E-08 3.2E-13 88.8 5.8 51 116-169 105-155 (155)
336 PRK12289 GTPase RsgA; Reviewed 98.7 2.4E-08 5.2E-13 98.8 7.1 84 188-276 86-172 (352)
337 PRK09563 rbgA GTPase YlqF; Rev 98.7 1.9E-08 4.2E-13 97.2 6.3 54 116-172 126-179 (287)
338 KOG0468 U5 snRNP-specific prot 98.7 3.1E-08 6.8E-13 101.4 7.7 109 116-235 133-262 (971)
339 TIGR03596 GTPase_YlqF ribosome 98.7 2.7E-08 6E-13 95.6 7.0 54 116-172 123-176 (276)
340 cd01855 YqeH YqeH. YqeH is an 98.7 1.7E-08 3.8E-13 91.4 5.0 51 116-169 132-190 (190)
341 TIGR00092 GTP-binding protein 98.7 3.3E-08 7.2E-13 97.6 7.2 86 116-203 7-109 (368)
342 KOG1143 Predicted translation 98.7 7.2E-08 1.6E-12 93.1 8.6 132 160-303 250-411 (591)
343 TIGR03597 GTPase_YqeH ribosome 98.7 2.6E-08 5.6E-13 99.3 5.5 53 116-171 159-216 (360)
344 KOG0466 Translation initiation 98.6 6.2E-08 1.4E-12 91.3 7.2 116 160-285 126-247 (466)
345 cd01851 GBP Guanylate-binding 98.6 8.8E-08 1.9E-12 89.2 7.8 86 116-204 12-104 (224)
346 cd01856 YlqF YlqF. Proteins o 98.6 8.2E-08 1.8E-12 85.5 6.5 51 116-169 120-170 (171)
347 KOG1547 Septin CDC10 and relat 98.5 2.3E-06 4.9E-11 78.5 14.2 128 116-246 51-208 (336)
348 KOG2655 Septin family protein 98.5 1.2E-06 2.7E-11 85.7 13.3 129 116-247 26-183 (366)
349 PRK12289 GTPase RsgA; Reviewed 98.5 1E-07 2.2E-12 94.4 5.5 54 115-171 176-236 (352)
350 PRK12288 GTPase RsgA; Reviewed 98.5 1.9E-07 4.1E-12 92.4 7.1 55 115-172 209-270 (347)
351 COG5019 CDC3 Septin family pro 98.5 2.7E-06 5.8E-11 82.8 14.7 129 116-247 28-187 (373)
352 KOG4423 GTP-binding protein-li 98.5 2.5E-08 5.4E-13 87.6 -0.0 152 116-278 30-193 (229)
353 PRK13796 GTPase YqeH; Provisio 98.5 1.5E-07 3.2E-12 94.0 5.5 53 116-171 165-222 (365)
354 cd04178 Nucleostemin_like Nucl 98.5 3.7E-07 8.1E-12 81.5 6.8 56 193-250 1-58 (172)
355 TIGR00157 ribosome small subun 98.4 8.5E-07 1.8E-11 83.8 9.4 84 188-276 33-120 (245)
356 cd01859 MJ1464 MJ1464. This f 98.4 3.4E-07 7.4E-12 80.1 5.9 52 115-169 105-156 (156)
357 TIGR01425 SRP54_euk signal rec 98.4 4.6E-06 9.9E-11 84.3 14.6 114 116-236 105-253 (429)
358 TIGR00157 ribosome small subun 98.4 3E-07 6.4E-12 86.9 5.4 54 115-172 124-184 (245)
359 KOG0464 Elongation factor G [T 98.4 4.8E-07 1E-11 88.5 6.2 112 116-238 42-170 (753)
360 COG1162 Predicted GTPases [Gen 98.4 2.7E-07 6E-12 88.1 4.2 57 114-173 167-230 (301)
361 PRK12288 GTPase RsgA; Reviewed 98.4 9.9E-07 2.2E-11 87.3 7.7 83 189-276 118-205 (347)
362 KOG0448 Mitofusin 1 GTPase, in 98.3 4.7E-06 1E-10 86.4 12.6 95 160-262 207-309 (749)
363 PRK10416 signal recognition pa 98.3 1.3E-05 2.8E-10 78.5 14.8 144 116-271 119-302 (318)
364 TIGR03597 GTPase_YqeH ribosome 98.3 3.9E-06 8.4E-11 83.8 11.1 90 185-278 57-152 (360)
365 PRK00098 GTPase RsgA; Reviewed 98.3 2.6E-06 5.7E-11 82.8 9.1 82 189-275 78-163 (298)
366 KOG2423 Nucleolar GTPase [Gene 98.3 1.8E-07 3.9E-12 91.0 0.7 55 116-173 312-366 (572)
367 cd03112 CobW_like The function 98.3 3.8E-06 8.2E-11 73.9 9.0 71 158-234 86-158 (158)
368 KOG0459 Polypeptide release fa 98.3 1.6E-06 3.4E-11 84.9 6.7 148 115-272 83-279 (501)
369 KOG0463 GTP-binding protein GP 98.2 3.8E-06 8.2E-11 81.4 8.7 111 159-279 219-357 (641)
370 cd01854 YjeQ_engC YjeQ/EngC. 98.2 4.1E-06 8.8E-11 81.0 9.1 83 189-276 76-161 (287)
371 PRK01889 GTPase RsgA; Reviewed 98.2 3.5E-06 7.5E-11 83.9 8.8 83 189-275 110-193 (356)
372 KOG3886 GTP-binding protein [S 98.2 2.9E-06 6.2E-11 77.4 7.1 122 113-238 5-132 (295)
373 KOG0469 Elongation factor 2 [T 98.2 1.6E-06 3.5E-11 86.6 5.5 109 116-235 24-163 (842)
374 PF03193 DUF258: Protein of un 98.2 9.8E-07 2.1E-11 77.4 3.2 56 113-171 37-99 (161)
375 TIGR00064 ftsY signal recognit 98.2 4.1E-05 8.8E-10 73.5 14.5 144 116-271 77-260 (272)
376 PRK13796 GTPase YqeH; Provisio 98.2 1.3E-05 2.8E-10 80.2 11.5 91 185-279 62-159 (365)
377 PRK00098 GTPase RsgA; Reviewed 98.1 4.1E-06 8.8E-11 81.5 6.2 53 116-171 169-228 (298)
378 KOG2484 GTPase [General functi 98.0 2E-06 4.4E-11 84.1 2.3 55 116-173 257-311 (435)
379 KOG2485 Conserved ATP/GTP bind 98.0 7.8E-06 1.7E-10 77.9 6.1 57 116-172 148-209 (335)
380 COG5192 BMS1 GTP-binding prote 98.0 3.8E-05 8.3E-10 78.0 11.2 102 116-236 74-177 (1077)
381 cd01854 YjeQ_engC YjeQ/EngC. 98.0 1.2E-05 2.6E-10 77.8 7.3 53 116-171 166-225 (287)
382 COG0523 Putative GTPases (G3E 98.0 4.7E-05 1E-09 74.5 10.8 152 115-273 5-195 (323)
383 PRK14974 cell division protein 98.0 9.5E-05 2.1E-09 72.8 12.6 101 158-271 222-322 (336)
384 PF02492 cobW: CobW/HypB/UreG, 97.9 9.8E-05 2.1E-09 66.2 10.5 133 116-257 5-177 (178)
385 COG1161 Predicted GTPases [Gen 97.9 3.2E-05 7E-10 75.9 7.1 89 182-275 25-113 (322)
386 PRK14722 flhF flagellar biosyn 97.8 0.00012 2.7E-09 72.9 10.1 118 116-236 142-295 (374)
387 KOG1534 Putative transcription 97.7 3E-05 6.5E-10 70.0 4.1 77 159-237 98-179 (273)
388 cd03115 SRP The signal recogni 97.7 0.0005 1.1E-08 61.0 12.0 73 158-237 82-154 (173)
389 PRK00771 signal recognition pa 97.7 0.00051 1.1E-08 70.0 12.5 70 159-236 176-246 (437)
390 cd03114 ArgK-like The function 97.7 0.00019 4E-09 62.5 7.8 58 158-233 91-148 (148)
391 PF00448 SRP54: SRP54-type pro 97.6 0.00036 7.7E-09 63.6 9.3 141 116-269 6-181 (196)
392 PRK12727 flagellar biosynthesi 97.6 0.0006 1.3E-08 70.5 11.9 138 116-267 355-523 (559)
393 KOG1707 Predicted Ras related/ 97.6 0.00042 9.1E-09 71.1 10.4 149 116-279 430-583 (625)
394 PRK11537 putative GTP-binding 97.6 0.00033 7.1E-09 68.7 9.4 137 116-260 9-186 (318)
395 KOG3905 Dynein light intermedi 97.6 0.0027 5.8E-08 61.1 14.9 58 221-279 221-290 (473)
396 smart00010 small_GTPase Small 97.6 8.7E-05 1.9E-09 61.4 4.4 110 116-268 5-115 (124)
397 KOG0447 Dynamin-like GTP bindi 97.6 0.0022 4.8E-08 65.3 14.8 76 160-236 413-493 (980)
398 KOG2484 GTPase [General functi 97.5 0.00042 9E-09 68.2 9.3 72 181-252 136-207 (435)
399 cd02038 FleN-like FleN is a me 97.5 0.00085 1.9E-08 57.6 10.2 100 116-235 5-110 (139)
400 TIGR03348 VI_IcmF type VI secr 97.5 0.0003 6.5E-09 80.4 8.5 117 116-237 116-258 (1169)
401 PF05783 DLIC: Dynein light in 97.5 0.0023 5E-08 65.8 14.0 61 222-283 196-268 (472)
402 TIGR02475 CobW cobalamin biosy 97.5 0.0022 4.8E-08 63.6 13.4 149 116-272 9-223 (341)
403 COG1419 FlhF Flagellar GTP-bin 97.4 0.00068 1.5E-08 67.5 9.4 72 158-236 281-352 (407)
404 PRK10867 signal recognition pa 97.4 0.0019 4.2E-08 65.7 12.7 72 158-236 183-254 (433)
405 PRK12726 flagellar biosynthesi 97.4 0.0013 2.9E-08 65.4 10.7 114 116-236 211-356 (407)
406 PRK06995 flhF flagellar biosyn 97.3 0.00088 1.9E-08 69.0 9.3 142 116-270 261-434 (484)
407 PRK14721 flhF flagellar biosyn 97.3 0.00058 1.3E-08 69.1 7.9 73 157-236 268-340 (420)
408 PRK12724 flagellar biosynthesi 97.3 0.0012 2.5E-08 66.7 9.7 115 116-236 228-373 (432)
409 PRK12723 flagellar biosynthesi 97.3 0.0018 3.9E-08 65.1 10.9 143 116-270 179-355 (388)
410 PRK11889 flhF flagellar biosyn 97.3 0.00047 1E-08 68.8 6.3 114 116-236 246-391 (436)
411 KOG1533 Predicted GTPase [Gene 97.3 0.0002 4.3E-09 65.8 3.4 121 115-237 6-178 (290)
412 KOG2743 Cobalamin synthesis pr 97.3 0.00042 9E-09 65.8 5.3 126 116-249 62-238 (391)
413 COG3640 CooC CO dehydrogenase 97.2 0.00071 1.5E-08 62.4 6.4 45 189-235 153-198 (255)
414 KOG1424 Predicted GTP-binding 97.2 0.00094 2E-08 67.8 7.6 81 181-263 164-244 (562)
415 KOG3859 Septins (P-loop GTPase 97.2 0.0011 2.4E-08 62.3 7.6 125 116-243 47-197 (406)
416 PRK05703 flhF flagellar biosyn 97.2 0.00066 1.4E-08 69.2 6.6 115 116-236 226-371 (424)
417 cd00066 G-alpha G protein alph 97.2 0.0017 3.6E-08 63.8 9.2 75 153-236 155-242 (317)
418 TIGR00959 ffh signal recogniti 97.2 0.0057 1.2E-07 62.3 13.1 72 158-236 182-253 (428)
419 PRK14723 flhF flagellar biosyn 97.2 0.0013 2.8E-08 70.9 8.9 145 116-270 190-366 (767)
420 cd03111 CpaE_like This protein 97.1 0.0024 5.2E-08 52.1 8.2 91 118-231 7-106 (106)
421 PF06858 NOG1: Nucleolar GTP-b 97.1 0.0012 2.7E-08 47.2 5.4 45 189-233 11-58 (58)
422 COG1618 Predicted nucleotide k 97.1 0.022 4.8E-07 49.8 14.2 89 175-279 84-176 (179)
423 PRK13695 putative NTPase; Prov 97.1 0.016 3.4E-07 51.5 13.5 87 177-278 82-172 (174)
424 cd02036 MinD Bacterial cell di 97.0 0.0033 7.1E-08 55.6 8.8 109 116-236 5-128 (179)
425 KOG2423 Nucleolar GTPase [Gene 97.0 0.0054 1.2E-07 60.4 10.1 96 183-279 205-300 (572)
426 PRK06731 flhF flagellar biosyn 96.9 0.0063 1.4E-07 58.2 10.2 72 158-236 154-225 (270)
427 COG1162 Predicted GTPases [Gen 96.9 0.0051 1.1E-07 59.2 9.5 85 189-278 77-166 (301)
428 smart00275 G_alpha G protein a 96.9 0.0031 6.8E-08 62.5 8.0 75 152-235 177-264 (342)
429 PRK01889 GTPase RsgA; Reviewed 96.8 0.00082 1.8E-08 67.0 3.1 53 116-171 200-259 (356)
430 PF09547 Spore_IV_A: Stage IV 96.5 0.043 9.4E-07 55.1 12.9 64 210-277 170-235 (492)
431 cd01983 Fer4_NifH The Fer4_Nif 96.5 0.019 4E-07 44.8 8.5 69 116-205 4-72 (99)
432 cd02042 ParA ParA and ParB of 96.5 0.019 4.1E-07 46.2 8.7 61 119-204 8-74 (104)
433 COG3523 IcmF Type VI protein s 96.5 0.0029 6.4E-08 71.0 5.0 116 116-237 130-271 (1188)
434 COG0552 FtsY Signal recognitio 96.4 0.005 1.1E-07 59.8 5.0 100 157-271 220-327 (340)
435 cd02037 MRP-like MRP (Multiple 96.2 0.021 4.6E-07 50.4 8.1 106 116-234 5-133 (169)
436 KOG0780 Signal recognition par 96.1 0.031 6.7E-07 55.2 9.1 87 116-205 106-227 (483)
437 PF07015 VirC1: VirC1 protein; 95.9 0.068 1.5E-06 49.6 10.1 100 158-272 83-187 (231)
438 cd03110 Fer4_NifH_child This p 95.9 0.027 5.8E-07 50.1 7.2 67 157-236 91-157 (179)
439 KOG2485 Conserved ATP/GTP bind 95.9 0.024 5.2E-07 54.5 7.0 90 181-275 36-127 (335)
440 KOG3887 Predicted small GTPase 95.8 0.03 6.5E-07 52.0 7.1 113 115-237 31-150 (347)
441 PRK13849 putative crown gall t 95.6 0.039 8.4E-07 51.6 7.3 66 157-233 82-151 (231)
442 PF13401 AAA_22: AAA domain; P 95.5 0.018 3.9E-07 48.1 4.4 22 114-135 7-28 (131)
443 PF00004 AAA: ATPase family as 95.5 0.044 9.5E-07 45.5 6.5 19 116-134 3-21 (132)
444 KOG0082 G-protein alpha subuni 95.1 0.04 8.7E-07 54.3 5.7 75 153-236 189-276 (354)
445 PF13555 AAA_29: P-loop contai 95.0 0.017 3.8E-07 42.2 2.3 17 116-132 28-44 (62)
446 PF08433 KTI12: Chromatin asso 94.9 0.4 8.8E-06 45.9 12.1 141 116-279 6-174 (270)
447 PHA02518 ParA-like protein; Pr 94.9 0.17 3.7E-06 45.9 9.1 67 158-235 76-146 (211)
448 PF05879 RHD3: Root hair defec 94.8 0.018 3.8E-07 62.9 2.8 83 117-199 1-88 (742)
449 PRK04195 replication factor C 94.8 0.42 9.2E-06 49.7 12.7 21 114-134 42-62 (482)
450 COG0541 Ffh Signal recognition 94.8 0.21 4.6E-06 50.4 9.8 45 158-207 182-228 (451)
451 PRK14737 gmk guanylate kinase; 94.7 0.02 4.3E-07 51.7 2.3 35 116-150 9-43 (186)
452 COG1341 Predicted GTPase or GT 94.6 0.12 2.5E-06 51.7 7.7 17 116-132 78-94 (398)
453 KOG0733 Nuclear AAA ATPase (VC 94.6 0.084 1.8E-06 55.2 6.8 26 110-135 221-247 (802)
454 PRK14738 gmk guanylate kinase; 94.5 0.033 7.2E-07 51.0 3.5 33 116-148 18-50 (206)
455 cd02032 Bchl_like This family 94.5 0.2 4.4E-06 47.6 9.0 66 159-234 116-184 (267)
456 cd00009 AAA The AAA+ (ATPases 94.5 0.18 3.9E-06 41.9 7.8 21 115-135 23-43 (151)
457 COG1116 TauB ABC-type nitrate/ 94.4 0.026 5.6E-07 52.8 2.3 20 116-135 34-53 (248)
458 PF00005 ABC_tran: ABC transpo 94.4 0.039 8.4E-07 46.6 3.3 25 112-136 11-36 (137)
459 COG1120 FepC ABC-type cobalami 94.3 0.16 3.5E-06 48.1 7.6 19 116-134 33-51 (258)
460 PF05621 TniB: Bacterial TniB 94.2 0.15 3.3E-06 49.3 7.2 102 116-231 66-189 (302)
461 PF00503 G-alpha: G-protein al 94.0 0.062 1.3E-06 54.3 4.5 74 153-235 229-316 (389)
462 TIGR03263 guanyl_kin guanylate 94.0 0.036 7.9E-07 49.2 2.5 50 116-167 6-55 (180)
463 cd00071 GMPK Guanosine monopho 94.0 0.046 9.9E-07 46.7 2.9 50 116-167 4-54 (137)
464 PF13207 AAA_17: AAA domain; P 93.9 0.042 9.1E-07 45.3 2.5 19 116-134 4-22 (121)
465 PRK00300 gmk guanylate kinase; 93.8 0.058 1.3E-06 49.0 3.4 20 116-135 10-29 (205)
466 COG1222 RPT1 ATP-dependent 26S 93.6 0.24 5.2E-06 48.8 7.3 27 109-135 182-209 (406)
467 cd01120 RecA-like_NTPases RecA 93.6 0.27 5.9E-06 42.0 7.2 20 116-135 4-23 (165)
468 COG0194 Gmk Guanylate kinase [ 93.4 0.028 6.1E-07 50.3 0.7 36 116-152 9-44 (191)
469 TIGR03574 selen_PSTK L-seryl-t 93.4 2.8 6.1E-05 39.4 14.3 18 116-133 4-21 (249)
470 PF05729 NACHT: NACHT domain 93.3 0.25 5.5E-06 42.5 6.6 19 116-134 5-23 (166)
471 KOG2203 GTP-binding protein [G 93.3 0.062 1.3E-06 55.2 3.0 82 116-197 42-126 (772)
472 cd03225 ABC_cobalt_CbiO_domain 93.3 0.07 1.5E-06 48.8 3.1 24 112-135 27-51 (211)
473 KOG0446 Vacuolar sorting prote 93.3 0.052 1.1E-06 58.3 2.5 45 159-203 132-180 (657)
474 cd03261 ABC_Org_Solvent_Resist 93.2 0.072 1.6E-06 49.6 3.1 24 112-135 26-50 (235)
475 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.2 0.074 1.6E-06 48.9 3.1 24 112-135 30-54 (218)
476 COG3840 ThiQ ABC-type thiamine 93.2 0.071 1.5E-06 47.7 2.8 23 113-135 26-49 (231)
477 cd03222 ABC_RNaseL_inhibitor T 93.2 0.071 1.5E-06 47.7 2.9 24 112-135 25-49 (177)
478 COG3911 Predicted ATPase [Gene 93.1 0.097 2.1E-06 45.2 3.4 22 116-137 14-35 (183)
479 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.1 0.083 1.8E-06 45.5 3.1 25 111-135 25-50 (144)
480 PF13671 AAA_33: AAA domain; P 93.0 0.071 1.5E-06 45.2 2.6 18 116-133 4-21 (143)
481 TIGR00960 3a0501s02 Type II (G 93.0 0.081 1.7E-06 48.6 3.1 24 112-135 29-53 (216)
482 COG1136 SalX ABC-type antimicr 93.0 0.064 1.4E-06 49.8 2.3 21 116-136 36-56 (226)
483 TIGR01166 cbiO cobalt transpor 93.0 0.084 1.8E-06 47.5 3.1 24 112-135 18-42 (190)
484 TIGR02673 FtsE cell division A 92.9 0.086 1.9E-06 48.3 3.1 24 112-135 28-52 (214)
485 cd03265 ABC_DrrA DrrA is the A 92.9 0.087 1.9E-06 48.5 3.1 24 112-135 26-50 (220)
486 KOG0781 Signal recognition par 92.9 0.15 3.2E-06 51.9 4.8 75 157-236 465-544 (587)
487 cd03238 ABC_UvrA The excision 92.9 0.086 1.9E-06 47.2 3.0 23 111-133 20-43 (176)
488 PRK08181 transposase; Validate 92.9 0.16 3.5E-06 48.6 5.0 19 115-133 110-128 (269)
489 cd03226 ABC_cobalt_CbiO_domain 92.8 0.087 1.9E-06 48.0 3.0 24 112-135 26-50 (205)
490 TIGR03608 L_ocin_972_ABC putat 92.8 0.088 1.9E-06 47.9 3.0 24 112-135 24-48 (206)
491 smart00382 AAA ATPases associa 92.8 0.095 2.1E-06 43.1 3.0 22 115-136 6-27 (148)
492 PRK13541 cytochrome c biogenes 92.8 0.092 2E-06 47.5 3.1 25 111-135 25-50 (195)
493 cd03243 ABC_MutS_homologs The 92.8 0.76 1.6E-05 41.7 9.2 18 116-133 34-51 (202)
494 cd03292 ABC_FtsE_transporter F 92.8 0.091 2E-06 48.1 3.1 25 111-135 26-51 (214)
495 cd03262 ABC_HisP_GlnQ_permease 92.7 0.094 2E-06 47.9 3.1 24 112-135 26-50 (213)
496 cd03269 ABC_putative_ATPase Th 92.7 0.094 2E-06 47.9 3.1 24 112-135 26-50 (210)
497 cd03229 ABC_Class3 This class 92.7 0.098 2.1E-06 46.6 3.1 24 112-135 26-50 (178)
498 cd03224 ABC_TM1139_LivF_branch 92.7 0.095 2.1E-06 48.2 3.1 25 111-135 25-50 (222)
499 cd03216 ABC_Carb_Monos_I This 92.7 0.098 2.1E-06 46.0 3.0 25 111-135 25-50 (163)
500 cd03259 ABC_Carb_Solutes_like 92.6 0.099 2.1E-06 47.9 3.1 24 112-135 26-50 (213)
No 1
>COG1159 Era GTPase [General function prediction only]
Probab=100.00 E-value=2.3e-70 Score=510.69 Aligned_cols=290 Identities=44% Similarity=0.680 Sum_probs=276.6
Q ss_pred CeeE--EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhh
Q 015293 112 NHKS--VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 189 (409)
Q Consensus 112 ~~~~--ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~ 189 (409)
+.|+ ++|+||||||||+|+|+|.+++++|++|+|||+.+.++++.++.|++|+||||++ .+.+.+...|++.++.++
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih-~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIH-KPKHALGELMNKAARSAL 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCC-CcchHHHHHHHHHHHHHh
Confidence 4566 9999999999999999999999999999999999999999999999999999995 568899999999999999
Q ss_pred cCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh-HHHHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 190 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 190 ~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~-~~~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
.++|+++||+|+.+++...++++.+.++. .+.|+++++||+|...+.. +....+.+.....|..++++||++|.|++
T Consensus 84 ~dvDlilfvvd~~~~~~~~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~ 161 (298)
T COG1159 84 KDVDLILFVVDADEGWGPGDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVD 161 (298)
T ss_pred ccCcEEEEEEeccccCCccHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHH
Confidence 99999999999999998888999888876 5789999999999988776 56777888888889999999999999999
Q ss_pred HHHHHHHhhCCCCCCCCCCccccCchHHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCCeeEEEEEEEEeeCCcc
Q 015293 269 DIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQK 348 (409)
Q Consensus 269 ~L~~~L~~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~~~~eipys~~v~v~~~~~~~~~~~~i~~~i~v~~~~~~ 348 (409)
.|.+.|..+++++|++||.+.+|++|++|+++|++||+++..+++|+||++.|.++.|++++++.+.|.+.|+|+|+|||
T Consensus 162 ~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a~I~Ver~sQK 241 (298)
T COG1159 162 TLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHATIYVERESQK 241 (298)
T ss_pred HHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEEEEEEEEecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999987789999999999999999
Q ss_pred eEEeecCCchHHHHHHHHHHHHHHHcCCcEEEEEEEEeCCCcccCHHHHhhcCCcc
Q 015293 349 IILIGKGGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKHYGYGG 404 (409)
Q Consensus 349 ~iliG~~G~~ik~i~~~ar~~l~~~~~~~v~l~l~vkv~~~w~~~~~~~~~~g~~~ 404 (409)
.|+||++|++||+||..||++||++|+++|||+|||||+++||+++..|++|||..
T Consensus 242 ~IiIGk~G~~iK~IG~~AR~~ie~l~~~kV~L~L~VKVk~~W~~~~~~l~~lgy~~ 297 (298)
T COG1159 242 GIIIGKNGAMIKKIGTAARKDIEKLLGCKVYLELWVKVKKNWRDDEEALRELGYED 297 (298)
T ss_pred ceEECCCcHHHHHHHHHHHHHHHHHhCCceEEEEEEEEccccccCHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999975
No 2
>PRK15494 era GTPase Era; Provisional
Probab=100.00 E-value=2.2e-60 Score=468.20 Aligned_cols=282 Identities=31% Similarity=0.503 Sum_probs=253.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|+||||||||+|+|++.+++++++.++||++...+.+..++.++.||||||+. ..+..+...+.+.+..++..||++
T Consensus 57 ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~-~~~~~l~~~~~r~~~~~l~~aDvi 135 (339)
T PRK15494 57 IIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIF-EPKGSLEKAMVRCAWSSLHSADLV 135 (339)
T ss_pred EEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcC-CCcccHHHHHHHHHHHHhhhCCEE
Confidence 9999999999999999999999999999999999888888889999999999974 345567777788888889999999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~ 275 (409)
++|+|+..+....+..+.+.++. .+.|.++|+||+|+... ........+.....+.+++++||++|.|+++|+++|.
T Consensus 136 l~VvD~~~s~~~~~~~il~~l~~--~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~ 212 (339)
T PRK15494 136 LLIIDSLKSFDDITHNILDKLRS--LNIVPIFLLNKIDIESK-YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYIT 212 (339)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEEhhcCccc-cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHH
Confidence 99999988777766666666655 46788999999998654 3344444444444456899999999999999999999
Q ss_pred hhCCCCCCCCCCccccCchHHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCCeeEEEEEEEEeeCCcceEEeecC
Q 015293 276 TKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKG 355 (409)
Q Consensus 276 ~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~~~~eipys~~v~v~~~~~~~~~~~~i~~~i~v~~~~~~~iliG~~ 355 (409)
+.++++||+||.+++|+++.+++++|+|||++|.++++|+||+++|.++.|++++++.+.|.+.|+|+|+|||.|+||++
T Consensus 213 ~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~~~~~~~i~~~i~v~~~sqk~iiiG~~ 292 (339)
T PRK15494 213 SKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIVVSRESYKTIILGKN 292 (339)
T ss_pred HhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEEEEEEEEEEcCCCeEEEEEEEEECCCCceeEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999876778899999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHcCCcEEEEEEEEeCCCcccCHHHHhhcC
Q 015293 356 GKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKHYG 401 (409)
Q Consensus 356 G~~ik~i~~~ar~~l~~~~~~~v~l~l~vkv~~~w~~~~~~~~~~g 401 (409)
|++||+|+..||.+||++|+++|||+|||||+++||++++.|++|.
T Consensus 293 g~~ik~i~~~ar~~le~~~~~~v~l~l~Vkv~~~w~~~~~~l~~~~ 338 (339)
T PRK15494 293 GSKIKEIGAKSRMQMERFFGFPVHLFLFVKVRELWENNQEFYQYMK 338 (339)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCeEEEEEEEECCCcccCHHHHhhcc
Confidence 9999999999999999999999999999999999999999999984
No 3
>PRK00089 era GTPase Era; Reviewed
Probab=100.00 E-value=6.7e-59 Score=450.20 Aligned_cols=286 Identities=44% Similarity=0.692 Sum_probs=258.5
Q ss_pred CeeE--EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhh
Q 015293 112 NHKS--VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 189 (409)
Q Consensus 112 ~~~~--ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~ 189 (409)
+.++ ++|.||||||||+|+|+|.+.+++++.++||++...++...++.++.|+||||+.. ....+...+...+..++
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~-~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHK-PKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCC-chhHHHHHHHHHHHHHH
Confidence 3455 99999999999999999999999999999999999988887778999999999854 44556666777788889
Q ss_pred cCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCC-ChhhHHHHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 190 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 190 ~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~-~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
..+|++++|+|++++.......+...+.. .+.|+++|+||+|+. ....+......+....++.+++++||++|.|++
T Consensus 83 ~~~D~il~vvd~~~~~~~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~ 160 (292)
T PRK00089 83 KDVDLVLFVVDADEKIGPGDEFILEKLKK--VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVD 160 (292)
T ss_pred hcCCEEEEEEeCCCCCChhHHHHHHHHhh--cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHH
Confidence 99999999999998666666677666654 578999999999998 445555556666555567789999999999999
Q ss_pred HHHHHHHhhCCCCCCCCCCccccCchHHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCCeeEEEEEEEEeeCCcc
Q 015293 269 DIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQK 348 (409)
Q Consensus 269 ~L~~~L~~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~~~~eipys~~v~v~~~~~~~~~~~~i~~~i~v~~~~~~ 348 (409)
+|+++|.+.+++++|.||.+..++++.+++++|++||+++..+++|+||++++.++.|+++ +.+.|.+.|+|+|+|||
T Consensus 161 ~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~~--~~~~i~~~i~v~~~~~k 238 (292)
T PRK00089 161 ELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAVEIEKFEER--GLVRIEATIYVERDSQK 238 (292)
T ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEEEEEEEEEC--CeEEEEEEEEEccCCce
Confidence 9999999999999999999999999999999999999999999999999999999999986 57889999999999999
Q ss_pred eEEeecCCchHHHHHHHHHHHHHHHcCCcEEEEEEEEeCCCcccCHHHHhhcCC
Q 015293 349 IILIGKGGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKHYGY 402 (409)
Q Consensus 349 ~iliG~~G~~ik~i~~~ar~~l~~~~~~~v~l~l~vkv~~~w~~~~~~~~~~g~ 402 (409)
.|+||++|++||+|+..||++||++|+|+|||+|||||+++||+++..|++|||
T Consensus 239 ~i~ig~~g~~i~~i~~~ar~~l~~~~~~~v~l~l~vkv~~~w~~~~~~~~~~g~ 292 (292)
T PRK00089 239 GIIIGKGGAMLKKIGTEARKDIEKLLGKKVFLELWVKVKKGWRDDEKALRELGY 292 (292)
T ss_pred eEEEeCCcHHHHHHHHHHHHHHHHHhCCCEEEEEEEEECCCccCCHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999998
No 4
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=100.00 E-value=1.6e-55 Score=421.87 Aligned_cols=266 Identities=39% Similarity=0.554 Sum_probs=237.1
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|+||||||||+|+|+|.+++++++.++||++...++...++.++.|+||||+.. ..+.+...+.+.+..++..+|++
T Consensus 5 liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~-~~~~l~~~~~~~~~~~l~~aDvv 83 (270)
T TIGR00436 5 ILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHE-KKHSLNRLMMKEARSAIGGVDLI 83 (270)
T ss_pred EECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCC-CcchHHHHHHHHHHHHHhhCCEE
Confidence 89999999999999999999999999999999998888888888999999999854 34456666777788889999999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~ 275 (409)
++|+|++...... ..+...+.. .+.|+++|+||+|+............+....++.+++++||++|.|+++|+++|.
T Consensus 84 l~VvD~~~~~~~~-~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~ 160 (270)
T TIGR00436 84 LFVVDSDQWNGDG-EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIE 160 (270)
T ss_pred EEEEECCCCCchH-HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHH
Confidence 9999998765443 455555555 5789999999999986555444444444444556899999999999999999999
Q ss_pred hhCCCCCCCCCCccccCchHHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCCeeEEEEEEEEeeCCcceEEeecC
Q 015293 276 TKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKG 355 (409)
Q Consensus 276 ~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~~~~eipys~~v~v~~~~~~~~~~~~i~~~i~v~~~~~~~iliG~~ 355 (409)
+.++++||.||.+..|+++++++++|++||++|.++++|+||++.+.++.|++++++.+.|.+.|+|+|+|||.|+||++
T Consensus 161 ~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~i~~~i~v~~~s~k~iiig~~ 240 (270)
T TIGR00436 161 VHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIHALISVERESQKKIIIGKN 240 (270)
T ss_pred HhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEECCCCeEEEEEEEEECcCCceeEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999876778899999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHcCCcEEEEEEEE
Q 015293 356 GKALKLLATAARLDIEDFLQKKVYLEIEVK 385 (409)
Q Consensus 356 G~~ik~i~~~ar~~l~~~~~~~v~l~l~vk 385 (409)
|++||+|+.+||++||++|||+|||+||||
T Consensus 241 g~~ik~i~~~ar~~l~~~~~~~v~l~l~vk 270 (270)
T TIGR00436 241 GSMIKAIGIAARKDILELFDCDVFLELFVK 270 (270)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCEEEEEEEC
Confidence 999999999999999999999999999997
No 5
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-49 Score=367.18 Aligned_cols=271 Identities=48% Similarity=0.767 Sum_probs=236.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh---hhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI---HMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~---~~l~~~~~~~~~~~~~~a 192 (409)
++|.||||||||.|.++|.++++++.+.+||++.+.++++.+..+++|+||||+..... +.+...+.+..+.++..|
T Consensus 77 vIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~A 156 (379)
T KOG1423|consen 77 VIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNA 156 (379)
T ss_pred EEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999976432 334445566888999999
Q ss_pred ceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhH-------------HH-HHHHHHh---------
Q 015293 193 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-------------AK-KLEWYEK--------- 249 (409)
Q Consensus 193 DvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~-------------~~-~~~~~~~--------- 249 (409)
|++++|+|++.........++..+..+ ...|.++|+||+|......+ .. .++..++
T Consensus 157 D~vvVv~Das~tr~~l~p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~ 235 (379)
T KOG1423|consen 157 DCVVVVVDASATRTPLHPRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEK 235 (379)
T ss_pred CEEEEEEeccCCcCccChHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccc
Confidence 999999999964444444444444443 67999999999998754321 11 1111111
Q ss_pred ------cCCCceEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCccccCchHHHHHHHHHHHHHHhhcCCCCCceeEEEE
Q 015293 250 ------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNV 323 (409)
Q Consensus 250 ------~~~~~~iv~iSA~~g~gi~~L~~~L~~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~~~~eipys~~v~v 323 (409)
+.+|..+|++||++|+||++|.+||...++.+||.||.++.|+++.++++.|++||++++++++||||.+++++
T Consensus 236 ~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~e~VReklLd~~pqEVPY~lq~~i 315 (379)
T KOG1423|consen 236 WRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCSESVREKLLDHLPQEVPYNLQVRI 315 (379)
T ss_pred cccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHHHHHHHHHHhhCccccCcceEEEE
Confidence 33466799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCeeEEEEEEEEeeCCcceEEeecCCchHHHHHHHHHHHHHHHcCCcEEEEEEEEeC
Q 015293 324 VSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKALKLLATAARLDIEDFLQKKVYLEIEVKVK 387 (409)
Q Consensus 324 ~~~~~~~~~~~~i~~~i~v~~~~~~~iliG~~G~~ik~i~~~ar~~l~~~~~~~v~l~l~vkv~ 387 (409)
..|++++++.++|.+.+.|.+++|+.++||++|..|++|+..|+.||+++|+++|+|+|.||++
T Consensus 316 ~~w~e~~~g~l~I~~~v~~pK~s~~klliGkgG~ki~qI~~~a~~dL~~if~r~V~l~l~Vk~k 379 (379)
T KOG1423|consen 316 LSWKERPAGVLFIQVEVVCPKNSQKKLLIGKGGKKISQIGTRANEDLEDIFQRKVFLRLSVKLK 379 (379)
T ss_pred EEeeecCCcEEEEEEEEEcCCCcceeEEEcCCCccHHHHHHHHHHHHHHHhhceeeEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999975
No 6
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.98 E-value=2.4e-32 Score=268.58 Aligned_cols=221 Identities=31% Similarity=0.463 Sum_probs=183.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
|+|+||||||||+|+|+|.+.++|+++||+|||+.++...+.+..+.++||+|+.....+.+...+.+++..++..||++
T Consensus 8 IVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvi 87 (444)
T COG1160 8 IVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVI 87 (444)
T ss_pred EECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999965555678899999999999999999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~ 275 (409)
|||+|+..+..+.+..+.+.++. .++|+++|+||+|-..... ...+++. .++..++++||.+|.|+.+|++.+.
T Consensus 88 lfvVD~~~Git~~D~~ia~~Lr~--~~kpviLvvNK~D~~~~e~--~~~efys--lG~g~~~~ISA~Hg~Gi~dLld~v~ 161 (444)
T COG1160 88 LFVVDGREGITPADEEIAKILRR--SKKPVILVVNKIDNLKAEE--LAYEFYS--LGFGEPVPISAEHGRGIGDLLDAVL 161 (444)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEEcccCchhhh--hHHHHHh--cCCCCceEeehhhccCHHHHHHHHH
Confidence 99999999999999999999986 7899999999999763322 2233333 3677899999999999999999999
Q ss_pred hhCCCCCCCCCCccccCchHHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec------CC-CeeEEEEEEEEeeCCcc
Q 015293 276 TKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PT-AKDFIQVEIVVEKNSQK 348 (409)
Q Consensus 276 ~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~~~~eipys~~v~v~~~~~~------~~-~~~~i~~~i~v~~~~~~ 348 (409)
+.++ .+...+.... ..+.+ +--..++++|+|+.+|.+.+++| +| +++.|. ..+++++++
T Consensus 162 ~~l~-~~e~~~~~~~-~~~ik----------iaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~--~~~e~~~~~ 227 (444)
T COG1160 162 ELLP-PDEEEEEEEE-TDPIK----------IAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSID--IEFERDGRK 227 (444)
T ss_pred hhcC-Cccccccccc-CCceE----------EEEEeCCCCCchHHHHHhccCceEEecCCCCcccccee--eeEEECCeE
Confidence 9986 3222221110 11111 12345999999999999988877 34 567776 556889999
Q ss_pred eEEeecCC
Q 015293 349 IILIGKGG 356 (409)
Q Consensus 349 ~iliG~~G 356 (409)
+.+|++.|
T Consensus 228 ~~liDTAG 235 (444)
T COG1160 228 YVLIDTAG 235 (444)
T ss_pred EEEEECCC
Confidence 99999999
No 7
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.95 E-value=1.9e-27 Score=237.46 Aligned_cols=188 Identities=23% Similarity=0.266 Sum_probs=146.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCe-eEEEEeCCCCchhhhh--hHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIH--MLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~-~i~liDtpG~~~~~~~--~l~~~~~~~~~~~~~~a 192 (409)
|||.||||||||+|+|++.+. .++++|+||+.+..+++...+. .+.|+||||+...... .+... ...++..+
T Consensus 164 lVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~----~l~~i~ra 238 (390)
T PRK12298 164 LLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIR----FLKHLERC 238 (390)
T ss_pred EEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHH----HHHHHHhC
Confidence 999999999999999999885 6899999999999999887754 5999999998643211 13333 33467899
Q ss_pred ceEEEEeeCCCC----CChHHHHHHHHhccCC---CCCCEEEEEecCCCCChhhHHHHHHHHHhcCCC-ceEEEcccCCC
Q 015293 193 DCIVVLVDACKA----PERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV-DEVIPVSAKYG 264 (409)
Q Consensus 193 DvillVvD~~~~----~~~~~~~l~~~l~~~~---~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~-~~iv~iSA~~g 264 (409)
|++++|+|++.. .......+.+.+..+. .++|+++|+||+|+.....+......+.....+ .+++++||+++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 999999998722 1122233333333321 368999999999998665554444443332232 26899999999
Q ss_pred CCHHHHHHHHHhhCCCCCCCCCCccccCchHHHHHHHHHHHHHH
Q 015293 265 HGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIF 308 (409)
Q Consensus 265 ~gi~~L~~~L~~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~ 308 (409)
.|+++|++.|.+.+++.+++||.++.++++.+++++|++||++.
T Consensus 319 ~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiRE~~~ 362 (390)
T PRK12298 319 LGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQLE 362 (390)
T ss_pred cCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999994
No 8
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.95 E-value=8.3e-28 Score=237.22 Aligned_cols=203 Identities=27% Similarity=0.339 Sum_probs=158.2
Q ss_pred cccCCCCCCCCCCcCChhhhhhhccCCC-ccccCCCcccccccccccCCCeeE---EEecCCCChHHHHHHHhCCcceee
Q 015293 64 QREMDLDDGDEMEFDDASSFLSLSEKPD-RNMASPDDYEIEEFDYASHPNHKS---VLGKPNVGKSTLANQMIGQKLSIV 139 (409)
Q Consensus 64 ~~e~d~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---ivG~~n~GKSsLln~l~~~~~~~v 139 (409)
+..+|++++ |.+....+.+....+.+. ....++.....+... +.|+ |+|+||||||||+|+|++.+.++|
T Consensus 172 Ea~IDfpee-di~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~il-----r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIV 245 (454)
T COG0486 172 EANIDFPEE-DIEELVLEKIREKLEELIAELDELLATAKQGKIL-----REGLKVVIIGRPNVGKSSLLNALLGRDRAIV 245 (454)
T ss_pred eEeCCCCcc-cccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----hcCceEEEECCCCCcHHHHHHHHhcCCceEe
Confidence 456777776 565555554444433322 223333333333333 3444 999999999999999999999999
Q ss_pred ecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccC
Q 015293 140 TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH 219 (409)
Q Consensus 140 ~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~ 219 (409)
++.||||||.+...+..+|.++.++||+|++ +..+.+++.++++++..+..||+++||+|++.+....+..+...+
T Consensus 246 TdI~GTTRDviee~i~i~G~pv~l~DTAGiR-et~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~--- 321 (454)
T COG0486 246 TDIAGTTRDVIEEDINLNGIPVRLVDTAGIR-ETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELL--- 321 (454)
T ss_pred cCCCCCccceEEEEEEECCEEEEEEecCCcc-cCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhc---
Confidence 9999999999999999999999999999996 678899999999999999999999999999998666666666522
Q ss_pred CCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHHhhCCCC
Q 015293 220 KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 281 (409)
Q Consensus 220 ~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~~~l~~~ 281 (409)
..++|+++|+||+|+..+...... ....-.+++.+||++|+|++.|.+.|.+.+...
T Consensus 322 ~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 322 PKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred ccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 267999999999999876543322 112223689999999999999999999988755
No 9
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.92 E-value=1.9e-23 Score=205.99 Aligned_cols=198 Identities=22% Similarity=0.307 Sum_probs=151.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh--hhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~--~~~l~~~~~~~~~~~~~~aD 193 (409)
|+|+||||||||+|+|+|...+++++.+|||+|.+...+++++..+.++||+|+.... ...++..-+..+..++..||
T Consensus 183 iiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~ 262 (444)
T COG1160 183 IIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERAD 262 (444)
T ss_pred EEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999996532 12334444566778899999
Q ss_pred eEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCCh--hhHHHHHHH---HHhcCCCceEEEcccCCCCCHH
Q 015293 194 CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEW---YEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 194 villVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~--~~~~~~~~~---~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
++++|+|++.+...++..+..+... .++++++|+||+|+... ......... .-.+.++.+++++||++|.|+.
T Consensus 263 vvllviDa~~~~~~qD~~ia~~i~~--~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~ 340 (444)
T COG1160 263 VVLLVIDATEGISEQDLRIAGLIEE--AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLD 340 (444)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHH--cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChH
Confidence 9999999999999999999888777 88999999999999875 223332222 2334567899999999999999
Q ss_pred HHHHHHHhhCCCCCCCCCCccccCchHHHHHHHHHHHHHHhhcCCCCCceeEEEEEE
Q 015293 269 DIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVS 325 (409)
Q Consensus 269 ~L~~~L~~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~~~~eipys~~v~v~~ 325 (409)
.|++.+......... +-..-.++..+...+..+ .+-+.|.-.+.+.-
T Consensus 341 ~l~~~i~~~~~~~~~---------ri~Ts~LN~~l~~a~~~~-pP~~~~G~r~ki~Y 387 (444)
T COG1160 341 KLFEAIKEIYECATR---------RISTSLLNRVLEDAVAKH-PPPVRYGRRLKIKY 387 (444)
T ss_pred HHHHHHHHHHHHhcc---------ccCHHHHHHHHHHHHHhC-CCCccCCceEEEEE
Confidence 999999876543221 111223455565555444 44554444554443
No 10
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=1.1e-24 Score=189.92 Aligned_cols=152 Identities=34% Similarity=0.424 Sum_probs=108.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|.||||||||+|+|+|.+ +.++++||+|.+...+.+..++.++.|+||||+..-.....+......... ....|++
T Consensus 5 lvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~-~~~~D~i 82 (156)
T PF02421_consen 5 LVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLL-SEKPDLI 82 (156)
T ss_dssp EEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH-HTSSSEE
T ss_pred EECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHh-hcCCCEE
Confidence 89999999999999999999 558999999999999999999999999999997653333333333333322 4689999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 274 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L 274 (409)
++|+|+++. +.. ..+...+.. .++|+++|+||+|+.....+....+.+....+ .|++++||++|+|+++|++.|
T Consensus 83 i~VvDa~~l-~r~-l~l~~ql~e--~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg-~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 83 IVVVDATNL-ERN-LYLTLQLLE--LGIPVVVVLNKMDEAERKGIEIDAEKLSERLG-VPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp EEEEEGGGH-HHH-HHHHHHHHH--TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT-S-EEEEBTTTTBTHHHHHHHH
T ss_pred EEECCCCCH-HHH-HHHHHHHHH--cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC-CCEEEEEeCCCcCHHHHHhhC
Confidence 999999863 222 233333344 68999999999998754322111222222233 489999999999999999875
No 11
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=2.5e-23 Score=214.12 Aligned_cols=220 Identities=25% Similarity=0.343 Sum_probs=159.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
|+|.||||||||+|+|++...+.+++.+++|++.....+.+++..+.+|||||+.. ....+...+...+..++..||++
T Consensus 43 IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~-~~~~~~~~~~~~~~~~~~~aD~i 121 (472)
T PRK03003 43 VVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEP-DAKGLQASVAEQAEVAMRTADAV 121 (472)
T ss_pred EEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCC-cchhHHHHHHHHHHHHHHhCCEE
Confidence 99999999999999999998888899999999999988888889999999999742 23345556667777889999999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~ 275 (409)
|+|+|++++.......+...++. .++|+++|+||+|+..... .....+. .++..++++||++|.|+++|+++|.
T Consensus 122 l~VvD~~~~~s~~~~~i~~~l~~--~~~piilV~NK~Dl~~~~~--~~~~~~~--~g~~~~~~iSA~~g~gi~eL~~~i~ 195 (472)
T PRK03003 122 LFVVDATVGATATDEAVARVLRR--SGKPVILAANKVDDERGEA--DAAALWS--LGLGEPHPVSALHGRGVGDLLDAVL 195 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCCccch--hhHHHHh--cCCCCeEEEEcCCCCCcHHHHHHHH
Confidence 99999998877666667777765 6899999999999864321 1112222 2344568999999999999999999
Q ss_pred hhCCCCCCCCCCccccCchHHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec------CC-CeeEEEEEEEEeeCCcc
Q 015293 276 TKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PT-AKDFIQVEIVVEKNSQK 348 (409)
Q Consensus 276 ~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~~~~eipys~~v~v~~~~~~------~~-~~~~i~~~i~v~~~~~~ 348 (409)
+.++......+. ...+ -++....++++|+|+.++.+....+ ++ +.+.+.. .++..++.
T Consensus 196 ~~l~~~~~~~~~---~~~~----------~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~--~~~~~~~~ 260 (472)
T PRK03003 196 AALPEVPRVGSA---SGGP----------RRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDS--LIELGGKT 260 (472)
T ss_pred hhcccccccccc---cccc----------eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceE--EEEECCEE
Confidence 988653211100 0000 0233445788888887776544322 23 2333432 34457778
Q ss_pred eEEeecCCc
Q 015293 349 IILIGKGGK 357 (409)
Q Consensus 349 ~iliG~~G~ 357 (409)
+.++++.|.
T Consensus 261 ~~l~DTaG~ 269 (472)
T PRK03003 261 WRFVDTAGL 269 (472)
T ss_pred EEEEECCCc
Confidence 889999994
No 12
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=3e-23 Score=211.44 Aligned_cols=220 Identities=34% Similarity=0.438 Sum_probs=161.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|+||||||||+|+|++...+.+++.+++|++.....+.+++..+.+|||||+.. ....+...+...+..++..||++
T Consensus 4 ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~-~~~~~~~~~~~~~~~~~~~ad~v 82 (429)
T TIGR03594 4 IVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEE-DDDGLDKQIREQAEIAIEEADVI 82 (429)
T ss_pred EECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCC-cchhHHHHHHHHHHHHHhhCCEE
Confidence 89999999999999999999888999999999999998888999999999999743 33446666777788889999999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~ 275 (409)
++|+|+..+....+..+...++. .++|+++|+||+|+....... .+.+ ..++.+++++||++|.|+++|++.+.
T Consensus 83 l~vvD~~~~~~~~d~~i~~~l~~--~~~piilVvNK~D~~~~~~~~--~~~~--~lg~~~~~~vSa~~g~gv~~ll~~i~ 156 (429)
T TIGR03594 83 LFVVDGREGLTPEDEEIAKWLRK--SGKPVILVANKIDGKKEDAVA--AEFY--SLGFGEPIPISAEHGRGIGDLLDAIL 156 (429)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH--hCCCEEEEEECccCCcccccH--HHHH--hcCCCCeEEEeCCcCCChHHHHHHHH
Confidence 99999999888877778777776 689999999999987543211 1111 23556789999999999999999999
Q ss_pred hhCCCCCCCCCCccccCchHHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEe------cCC-CeeEEEEEEEEeeCCcc
Q 015293 276 TKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKT------RPT-AKDFIQVEIVVEKNSQK 348 (409)
Q Consensus 276 ~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~~~~eipys~~v~v~~~~~------~~~-~~~~i~~~i~v~~~~~~ 348 (409)
+.++......... ..+ + ++.-..++++|+++.++...+.. .++ +...+. ..++..++.
T Consensus 157 ~~l~~~~~~~~~~---~~~--------~--~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~--~~~~~~~~~ 221 (429)
T TIGR03594 157 ELLPEEEEEEEEE---DGP--------I--KIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSID--IPFERNGKK 221 (429)
T ss_pred HhcCccccccccc---CCc--------e--EEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEe--EEEEECCcE
Confidence 9886532111100 000 0 12223466677776665443322 122 222232 334557788
Q ss_pred eEEeecCCc
Q 015293 349 IILIGKGGK 357 (409)
Q Consensus 349 ~iliG~~G~ 357 (409)
+.++++.|.
T Consensus 222 ~~liDT~G~ 230 (429)
T TIGR03594 222 YLLIDTAGI 230 (429)
T ss_pred EEEEECCCc
Confidence 999999994
No 13
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.89 E-value=1.1e-22 Score=218.81 Aligned_cols=222 Identities=25% Similarity=0.353 Sum_probs=164.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
|+|+||||||||+|+|++.+.+++++.+|+|++.......+++..+.+|||||+.. ....+...+...+..++..||++
T Consensus 280 IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~-~~~~~~~~~~~~~~~~~~~aD~i 358 (712)
T PRK09518 280 IVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA-DVEGIDSAIASQAQIAVSLADAV 358 (712)
T ss_pred EECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCC-CCccHHHHHHHHHHHHHHhCCEE
Confidence 99999999999999999999888999999999999988888889999999999742 33446666778888889999999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~ 275 (409)
|||+|++.+....+..+...++. .++|+++|+||+|+...... ....+. .++..++++||++|.||++|+++|.
T Consensus 359 L~VvDa~~~~~~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~~~--~~~~~~--lg~~~~~~iSA~~g~GI~eLl~~i~ 432 (712)
T PRK09518 359 VFVVDGQVGLTSTDERIVRMLRR--AGKPVVLAVNKIDDQASEYD--AAEFWK--LGLGEPYPISAMHGRGVGDLLDEAL 432 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEECcccccchhh--HHHHHH--cCCCCeEEEECCCCCCchHHHHHHH
Confidence 99999998887777777777776 78999999999998653221 122222 2344578999999999999999999
Q ss_pred hhCCCCCCCCCCccccCchHHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec------CC-CeeEEEEEEEEeeCCcc
Q 015293 276 TKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PT-AKDFIQVEIVVEKNSQK 348 (409)
Q Consensus 276 ~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~~~~eipys~~v~v~~~~~~------~~-~~~~i~~~i~v~~~~~~ 348 (409)
+.++...... ...+... . -++....++++|+++.++.+...++ ++ +...+. ..+...++.
T Consensus 433 ~~l~~~~~~~--~a~~~~~-------~--~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~--~~~~~~~~~ 499 (712)
T PRK09518 433 DSLKVAEKTS--GFLTPSG-------L--RRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVD--EIVEIDGED 499 (712)
T ss_pred Hhcccccccc--cccCCCC-------C--cEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcce--eEEEECCCE
Confidence 9886532110 0000000 0 1233456888888888876554432 23 334443 234557788
Q ss_pred eEEeecCCc
Q 015293 349 IILIGKGGK 357 (409)
Q Consensus 349 ~iliG~~G~ 357 (409)
+.++++.|.
T Consensus 500 ~~liDTaG~ 508 (712)
T PRK09518 500 WLFIDTAGI 508 (712)
T ss_pred EEEEECCCc
Confidence 889999994
No 14
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=3e-22 Score=174.36 Aligned_cols=156 Identities=35% Similarity=0.481 Sum_probs=121.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|.+|||||||+|+|++.+...++..+++|++.........+..+.+|||||+.... ..+...+...+...+..+|++
T Consensus 2 l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~-~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 2 IVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDD-EGISKEIREQAELAIEEADVI 80 (157)
T ss_pred ccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCch-hHHHHHHHHHHHHHHHhCCEE
Confidence 6899999999999999999877778899999988887778888999999999975422 234444555666678899999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~ 275 (409)
++|+|+.++.......+...++. .+.|+++|+||+|+....... ..+.. .+..+++++||++|.|+++++++|.
T Consensus 81 i~v~d~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~~---~~~~~-~~~~~~~~~Sa~~~~gv~~l~~~l~ 154 (157)
T cd01894 81 LFVVDGREGLTPADEEIAKYLRK--SKKPVILVVNKVDNIKEEDEA---AEFYS-LGFGEPIPISAEHGRGIGDLLDAIL 154 (157)
T ss_pred EEEEeccccCCccHHHHHHHHHh--cCCCEEEEEECcccCChHHHH---HHHHh-cCCCCeEEEecccCCCHHHHHHHHH
Confidence 99999987765555556666655 579999999999998754431 12222 2344789999999999999999998
Q ss_pred hhC
Q 015293 276 TKL 278 (409)
Q Consensus 276 ~~l 278 (409)
+.+
T Consensus 155 ~~~ 157 (157)
T cd01894 155 ELL 157 (157)
T ss_pred hhC
Confidence 653
No 15
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2e-22 Score=204.84 Aligned_cols=209 Identities=19% Similarity=0.240 Sum_probs=152.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEE------EEEEE------------EeCCCeeEEEEeCCCCchhhhhhH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH------RILGI------------CSGPEYQMILYDTPGIIEKKIHML 177 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~------~~~~~------------~~~~~~~i~liDtpG~~~~~~~~l 177 (409)
|+||..+|||.|+..|.+.++. -+...|.|.. +...+ ....-+.+++||||| +++|.++
T Consensus 480 ilGHVDTGKTKlld~ir~tNVq-egeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpg--hEsFtnl 556 (1064)
T KOG1144|consen 480 ILGHVDTGKTKLLDKIRGTNVQ-EGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPG--HESFTNL 556 (1064)
T ss_pred EeecccccchHHHHHhhccccc-cccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCC--chhhhhh
Confidence 9999999999999999998875 2333333332 22211 113335789999999 7888888
Q ss_pred hHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCCh------hhHH----------
Q 015293 178 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP------GEIA---------- 241 (409)
Q Consensus 178 ~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~------~~~~---------- 241 (409)
+.++ ...||++|+|+|++++.++++...+++++. ++.|+||++||+|++-. ..+.
T Consensus 557 Rsrg-------sslC~~aIlvvdImhGlepqtiESi~lLR~--rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v 627 (1064)
T KOG1144|consen 557 RSRG-------SSLCDLAILVVDIMHGLEPQTIESINLLRM--RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDV 627 (1064)
T ss_pred hhcc-------ccccceEEEEeehhccCCcchhHHHHHHHh--cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHH
Confidence 8776 779999999999999999999999999998 89999999999998631 1111
Q ss_pred --HH-------HHHHHh-------------cCCCceEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCccccCchHHHHH
Q 015293 242 --KK-------LEWYEK-------------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFV 299 (409)
Q Consensus 242 --~~-------~~~~~~-------------~~~~~~iv~iSA~~g~gi~~L~~~L~~~l~~~~~~~~~~~~t~~~~r~~i 299 (409)
++ +..+.. ...+..++|+||.+|+||.+|+-+|+++.+. .+
T Consensus 628 ~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk----------------~m- 690 (1064)
T KOG1144|consen 628 QNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK----------------TM- 690 (1064)
T ss_pred HHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH----------------HH-
Confidence 11 111111 2245689999999999999999999987641 01
Q ss_pred HHHHHHHHHhhcCCCCCceeEEEEE--EEEecCCCeeEEEEEEE--EeeCCcceEEeecCCchHHHHHHH
Q 015293 300 GEIIREKIFMQYRNEVPYACQVNVV--SYKTRPTAKDFIQVEIV--VEKNSQKIILIGKGGKALKLLATA 365 (409)
Q Consensus 300 ~EiiRe~i~~~~~~eipys~~v~v~--~~~~~~~~~~~i~~~i~--v~~~~~~~iliG~~G~~ik~i~~~ 365 (409)
.+.+-|+..+.|. ..+..+|-...|++.++ +.++|...+|||.+|+++++|+.-
T Consensus 691 ------------~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaL 748 (1064)
T KOG1144|consen 691 ------------VEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRAL 748 (1064)
T ss_pred ------------HHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCchhHHHHHh
Confidence 1223344444444 44455776677776665 779999999999999999999864
No 16
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.89 E-value=1.3e-22 Score=207.06 Aligned_cols=152 Identities=31% Similarity=0.412 Sum_probs=122.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|+||||||||+|+|++.+.+++++.++||++.....+..++.++.+|||||+.+ ..+.++..+.+.+...+..+|++
T Consensus 220 ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~-~~~~ie~~gi~~~~~~~~~aD~i 298 (449)
T PRK05291 220 IAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRE-TDDEVEKIGIERSREAIEEADLV 298 (449)
T ss_pred EECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCC-CccHHHHHHHHHHHHHHHhCCEE
Confidence 99999999999999999999888999999999998888888889999999999853 44445555666677788999999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~ 275 (409)
++|+|++++.......++.. . .++|+++|+||+|+....... . ....+++++||++|.|+++|+++|.
T Consensus 299 l~VvD~s~~~s~~~~~~l~~--~--~~~piiiV~NK~DL~~~~~~~-------~-~~~~~~i~iSAktg~GI~~L~~~L~ 366 (449)
T PRK05291 299 LLVLDASEPLTEEDDEILEE--L--KDKPVIVVLNKADLTGEIDLE-------E-ENGKPVIRISAKTGEGIDELREAIK 366 (449)
T ss_pred EEEecCCCCCChhHHHHHHh--c--CCCCcEEEEEhhhccccchhh-------h-ccCCceEEEEeeCCCCHHHHHHHHH
Confidence 99999988764443333322 2 578999999999997643322 1 1224689999999999999999999
Q ss_pred hhCCC
Q 015293 276 TKLPL 280 (409)
Q Consensus 276 ~~l~~ 280 (409)
+.+..
T Consensus 367 ~~l~~ 371 (449)
T PRK05291 367 ELAFG 371 (449)
T ss_pred HHHhh
Confidence 98764
No 17
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=6e-22 Score=202.23 Aligned_cols=219 Identities=31% Similarity=0.413 Sum_probs=157.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|+||||||||+|+|++...+.+++.+++|++.....+.+++..+.+|||||+.. ....+...+...+..++..||++
T Consensus 6 ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~-~~~~~~~~~~~~~~~~~~~ad~i 84 (435)
T PRK00093 6 IVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEP-DDDGFEKQIREQAELAIEEADVI 84 (435)
T ss_pred EECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCC-cchhHHHHHHHHHHHHHHhCCEE
Confidence 99999999999999999999888999999999999988888889999999999754 22224455566677788999999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~ 275 (409)
|+|+|++++....+..+...++. .++|+++|+||+|+..... ...+.+ . .++..++++||++|.|+++|++.|.
T Consensus 85 l~vvd~~~~~~~~~~~~~~~l~~--~~~piilv~NK~D~~~~~~--~~~~~~-~-lg~~~~~~iSa~~g~gv~~l~~~I~ 158 (435)
T PRK00093 85 LFVVDGRAGLTPADEEIAKILRK--SNKPVILVVNKVDGPDEEA--DAYEFY-S-LGLGEPYPISAEHGRGIGDLLDAIL 158 (435)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--cCCcEEEEEECccCccchh--hHHHHH-h-cCCCCCEEEEeeCCCCHHHHHHHHH
Confidence 99999998877777777777776 6899999999999754221 112222 1 2444579999999999999999998
Q ss_pred hhCCCCCCCCCCccccCchHHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec------CC-CeeEEEEEEEEeeCCcc
Q 015293 276 TKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PT-AKDFIQVEIVVEKNSQK 348 (409)
Q Consensus 276 ~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~~~~eipys~~v~v~~~~~~------~~-~~~~i~~~i~v~~~~~~ 348 (409)
...+....... ..... ++.-..++++|+|+.++.+.+..+ ++ +...+. ..+...++.
T Consensus 159 ~~~~~~~~~~~------~~~~~--------~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~--~~~~~~~~~ 222 (435)
T PRK00093 159 EELPEEEEEDE------EDEPI--------KIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSID--TPFERDGQK 222 (435)
T ss_pred hhCCccccccc------cccce--------EEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEE--EEEEECCee
Confidence 85432211100 00000 122344777777777765443321 23 233332 445567888
Q ss_pred eEEeecCCc
Q 015293 349 IILIGKGGK 357 (409)
Q Consensus 349 ~iliG~~G~ 357 (409)
+.++++.|-
T Consensus 223 ~~lvDT~G~ 231 (435)
T PRK00093 223 YTLIDTAGI 231 (435)
T ss_pred EEEEECCCC
Confidence 999999994
No 18
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=1.3e-20 Score=193.99 Aligned_cols=165 Identities=24% Similarity=0.241 Sum_probs=123.3
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHH--HHHHhhc
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK--NVRSAGI 190 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~--~~~~~~~ 190 (409)
.+ ++|+||||||||+|+|++.....+++.++||++.....+..++..+.||||||+.............. ....++.
T Consensus 213 kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~ 292 (472)
T PRK03003 213 RVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIE 292 (472)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHh
Confidence 44 99999999999999999998888899999999988888888888999999999743211111111111 2234578
Q ss_pred CcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHH---hcCCCceEEEcccCCCCCH
Q 015293 191 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 191 ~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~---~~~~~~~iv~iSA~~g~gi 267 (409)
.||++++|+|++++...++..+...+.. .++|+|+|+||+|+.............. ....+.+++++||++|.|+
T Consensus 293 ~ad~vilV~Da~~~~s~~~~~~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv 370 (472)
T PRK03003 293 AAEVAVVLIDASEPISEQDQRVLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAV 370 (472)
T ss_pred cCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCH
Confidence 9999999999998877666655555544 6799999999999975432221111111 1123468999999999999
Q ss_pred HHHHHHHHhhCCC
Q 015293 268 EDIRDWILTKLPL 280 (409)
Q Consensus 268 ~~L~~~L~~~l~~ 280 (409)
++|++.+.+.+..
T Consensus 371 ~~lf~~i~~~~~~ 383 (472)
T PRK03003 371 DKLVPALETALES 383 (472)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987753
No 19
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=2.2e-20 Score=190.40 Aligned_cols=162 Identities=26% Similarity=0.309 Sum_probs=127.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh--hhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~--~~l~~~~~~~~~~~~~~aD 193 (409)
++|+||+|||||+|+|++.....+++.++||++.....+..++..+.+|||||+..... ..++.........++..||
T Consensus 177 ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad 256 (429)
T TIGR03594 177 IIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERAD 256 (429)
T ss_pred EECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999888899999999998888888888999999999754221 1233334445566789999
Q ss_pred eEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCC-ChhhHHHHHHHHHhc---CCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKF---TDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~-~~~~~~~~~~~~~~~---~~~~~iv~iSA~~g~gi~~ 269 (409)
++++|+|++++...++..+...+.. .++|+++|+||+|+. ...........+... .+..+++++||++|.|+++
T Consensus 257 ~~ilV~D~~~~~~~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~ 334 (429)
T TIGR03594 257 VVLLVLDATEGITEQDLRIAGLILE--AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDK 334 (429)
T ss_pred EEEEEEECCCCccHHHHHHHHHHHH--cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHH
Confidence 9999999999887777777666555 679999999999998 433333333333322 2446899999999999999
Q ss_pred HHHHHHhhCC
Q 015293 270 IRDWILTKLP 279 (409)
Q Consensus 270 L~~~L~~~l~ 279 (409)
+++++.+...
T Consensus 335 l~~~i~~~~~ 344 (429)
T TIGR03594 335 LLDAIDEVYE 344 (429)
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 20
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.87 E-value=6.2e-21 Score=166.74 Aligned_cols=160 Identities=40% Similarity=0.589 Sum_probs=125.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|.+|+|||||+|+|++...+.+...+.+++..........+..+.+|||||+... .......+.......+..+|++
T Consensus 8 ~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~-~~~~~~~~~~~~~~~~~~~d~i 86 (168)
T cd04163 8 IVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKP-KKKLGERMVKAAWSALKDVDLV 86 (168)
T ss_pred EECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcc-hHHHHHHHHHHHHHHHHhCCEE
Confidence 999999999999999999998878888888888888777777889999999997542 2222333444556668899999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCC-ChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 274 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~-~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L 274 (409)
++|+|++++.......+.+.+.. .+.|+++|+||+|+. ....+......+....+..+++++|++++.|+++|++.|
T Consensus 87 ~~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l 164 (168)
T cd04163 87 LFVVDASEPIGEGDEFILELLKK--SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEI 164 (168)
T ss_pred EEEEECCCccCchHHHHHHHHHH--hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHH
Confidence 99999998755555556555554 468999999999998 455555555566555556689999999999999999999
Q ss_pred HhhC
Q 015293 275 LTKL 278 (409)
Q Consensus 275 ~~~l 278 (409)
.+.+
T Consensus 165 ~~~~ 168 (168)
T cd04163 165 VKYL 168 (168)
T ss_pred HhhC
Confidence 7653
No 21
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=3e-20 Score=189.77 Aligned_cols=162 Identities=25% Similarity=0.329 Sum_probs=128.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh--hhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~--~~l~~~~~~~~~~~~~~aD 193 (409)
++|+||+|||||+|+|++.....+++.+++|++.....+..++..+.++||||+..... ..++.........++..||
T Consensus 178 ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad 257 (435)
T PRK00093 178 IIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERAD 257 (435)
T ss_pred EECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999888999999999998888888888999999999754221 1233334445566788999
Q ss_pred eEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCceEEEcccCCCCCHHHH
Q 015293 194 CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 194 villVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~---~~~~~~iv~iSA~~g~gi~~L 270 (409)
++|+|+|++.+...++..+...+.. .++|+++|+||+|+............+.. .....+++++||++|.|++++
T Consensus 258 ~~ilViD~~~~~~~~~~~i~~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l 335 (435)
T PRK00093 258 VVLLVIDATEGITEQDLRIAGLALE--AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKL 335 (435)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHH--cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHH
Confidence 9999999999888777777766655 67999999999999855443333333322 224568999999999999999
Q ss_pred HHHHHhhCC
Q 015293 271 RDWILTKLP 279 (409)
Q Consensus 271 ~~~L~~~l~ 279 (409)
++.+.+...
T Consensus 336 ~~~i~~~~~ 344 (435)
T PRK00093 336 LEAIDEAYE 344 (435)
T ss_pred HHHHHHHHH
Confidence 999887653
No 22
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.87 E-value=3.3e-21 Score=190.55 Aligned_cols=154 Identities=27% Similarity=0.333 Sum_probs=113.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeC-CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~-~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|+||||||||+|+|++.+ ..+++.+++|+++....+.. ++.++.||||||+.....+.+...+ +.+...+..||+
T Consensus 194 lvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f-~~tle~~~~ADl 271 (351)
T TIGR03156 194 LVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAF-RATLEEVREADL 271 (351)
T ss_pred EECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHH-HHHHHHHHhCCE
Confidence 99999999999999999988 46789999999988877776 5789999999998443222332333 345566889999
Q ss_pred EEEEeeCCCCCChHH-HHHHHHhccCC-CCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHH
Q 015293 195 IVVLVDACKAPERID-EILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 272 (409)
Q Consensus 195 illVvD~~~~~~~~~-~~l~~~l~~~~-~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~ 272 (409)
+++|+|++++..... ..+...+.... .++|+++|+||+|+.....+.. ... ...+++++||++|.|+++|++
T Consensus 272 il~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~----~~~--~~~~~i~iSAktg~GI~eL~~ 345 (351)
T TIGR03156 272 LLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIER----LEE--GYPEAVFVSAKTGEGLDLLLE 345 (351)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHH----HHh--CCCCEEEEEccCCCCHHHHHH
Confidence 999999988753322 22222232221 4789999999999976433321 111 123589999999999999999
Q ss_pred HHHhh
Q 015293 273 WILTK 277 (409)
Q Consensus 273 ~L~~~ 277 (409)
+|.+.
T Consensus 346 ~I~~~ 350 (351)
T TIGR03156 346 AIAER 350 (351)
T ss_pred HHHhh
Confidence 99764
No 23
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.87 E-value=5.3e-21 Score=169.13 Aligned_cols=157 Identities=24% Similarity=0.378 Sum_probs=108.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh---hhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI---HMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~---~~l~~~~~~~~~~~~~~a 192 (409)
++|++|||||||+|+|++.... +++.+++|..........++.++.+|||||+..... ..+... ........+
T Consensus 5 ~~G~~~~GKssli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---~~~~~~~~~ 80 (168)
T cd01897 5 IAGYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQ---AITALAHLR 80 (168)
T ss_pred EEcCCCCCHHHHHHHHhcCCCc-cCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHH---HHHHHHhcc
Confidence 8999999999999999998764 566778888777777777788999999999743111 111111 111112346
Q ss_pred ceEEEEeeCCCCCC---hHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 193 DCIVVLVDACKAPE---RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 193 DvillVvD~~~~~~---~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
|++++|+|+++... .....+...++....+.|+++|+||+|+........ ...+... ...+++++||++|.|+++
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~-~~~~~~~-~~~~~~~~Sa~~~~gi~~ 158 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE-IEEEEEL-EGEEVLKISTLTEEGVDE 158 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH-HHHhhhh-ccCceEEEEecccCCHHH
Confidence 89999999987542 111223333333224799999999999986555443 2222222 235789999999999999
Q ss_pred HHHHHHhhC
Q 015293 270 IRDWILTKL 278 (409)
Q Consensus 270 L~~~L~~~l 278 (409)
++++|.+.+
T Consensus 159 l~~~l~~~~ 167 (168)
T cd01897 159 VKNKACELL 167 (168)
T ss_pred HHHHHHHHh
Confidence 999998764
No 24
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.87 E-value=2.5e-21 Score=171.40 Aligned_cols=159 Identities=24% Similarity=0.281 Sum_probs=110.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCe-eEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~-~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|++|||||||+|+|.+... .++..+++|.+...+.+..++. .+.+|||||+...... ...+...+...+..+|+
T Consensus 5 ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 5 LVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASE--GKGLGHRFLRHIERTRL 81 (170)
T ss_pred EECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccc--cCCchHHHHHHHHhCCE
Confidence 899999999999999998775 4677888888877777777766 9999999997431111 01122333344568999
Q ss_pred EEEEeeCCCC-C--ChHHHHHHHHhccCC---CCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 195 IVVLVDACKA-P--ERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 195 illVvD~~~~-~--~~~~~~l~~~l~~~~---~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
+++|+|++++ . .... .+.+.+.... .++|+++|+||+|+.+..........+.......+++++||++|.|++
T Consensus 82 vi~v~D~~~~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 160 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYK-TIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGLD 160 (170)
T ss_pred EEEEEecCCCCCHHHHHH-HHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCHH
Confidence 9999999876 2 2222 2222222211 368999999999997655544433333222123478999999999999
Q ss_pred HHHHHHHhhC
Q 015293 269 DIRDWILTKL 278 (409)
Q Consensus 269 ~L~~~L~~~l 278 (409)
+++++|.+.+
T Consensus 161 ~l~~~i~~~~ 170 (170)
T cd01898 161 ELLRKLAELL 170 (170)
T ss_pred HHHHHHHhhC
Confidence 9999998653
No 25
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=4.2e-21 Score=188.37 Aligned_cols=159 Identities=25% Similarity=0.284 Sum_probs=115.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeC-CCeeEEEEeCCCCchhhhh--hHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIH--MLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~-~~~~i~liDtpG~~~~~~~--~l~~~~~~~~~~~~~~a 192 (409)
|||.||||||||+|+|++.+.. ++++|+||..+..+.+.. ++.++.++||||+...... .+. ..+...++.|
T Consensus 163 lVG~PNaGKSTLln~ls~a~~~-va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg----~~flrhie~a 237 (335)
T PRK12299 163 LVGLPNAGKSTLISAVSAAKPK-IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLG----HRFLKHIERT 237 (335)
T ss_pred EEcCCCCCHHHHHHHHHcCCCc-cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHH----HHHHHHhhhc
Confidence 9999999999999999998754 799999999999998887 5678999999998653221 232 3344567889
Q ss_pred ceEEEEeeCCCCC-ChHHHHHHHHhccCC---CCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCceEEEcccCCCCCH
Q 015293 193 DCIVVLVDACKAP-ERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 193 DvillVvD~~~~~-~~~~~~l~~~l~~~~---~~~p~ilvlNK~Dl~~~~~~~~-~~~~~~~~~~~~~iv~iSA~~g~gi 267 (409)
|++++|+|+++.. ......+...+..+. .++|+++|+||+|+........ ....+....+ .+++++||++++|+
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~-~~i~~iSAktg~GI 316 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALG-GPVFLISAVTGEGL 316 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcC-CCEEEEEcCCCCCH
Confidence 9999999998653 122223333333221 3689999999999976543322 1222211112 47899999999999
Q ss_pred HHHHHHHHhhCCC
Q 015293 268 EDIRDWILTKLPL 280 (409)
Q Consensus 268 ~~L~~~L~~~l~~ 280 (409)
++|+++|.+.+..
T Consensus 317 ~eL~~~L~~~l~~ 329 (335)
T PRK12299 317 DELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987754
No 26
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.86 E-value=1.4e-20 Score=165.18 Aligned_cols=151 Identities=22% Similarity=0.241 Sum_probs=103.0
Q ss_pred EEecCCCChHHHHHHHhCCcceee--ecCCCceEEEEEEEEeCC-CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v--~~~~~tt~~~~~~~~~~~-~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++|++|||||||+|+|++...... ...+++|.+.....+... +..+.+|||||. .. +...+..++..|
T Consensus 5 i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~--~~-------~~~~~~~~~~~a 75 (164)
T cd04171 5 TAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGH--EK-------FIKNMLAGAGGI 75 (164)
T ss_pred EEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCCh--HH-------HHHHHHhhhhcC
Confidence 899999999999999998643222 224566776665555655 778999999994 22 223344567899
Q ss_pred ceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhH----HHHHHHHHhc-CCCceEEEcccCCCCCH
Q 015293 193 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI----AKKLEWYEKF-TDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 193 DvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~----~~~~~~~~~~-~~~~~iv~iSA~~g~gi 267 (409)
|++++|+|++++...........+... ..+|+++|+||+|+...... ....+.+... ....+++++||++|.|+
T Consensus 76 d~ii~V~d~~~~~~~~~~~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 154 (164)
T cd04171 76 DLVLLVVAADEGIMPQTREHLEILELL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGI 154 (164)
T ss_pred CEEEEEEECCCCccHhHHHHHHHHHHh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCH
Confidence 999999999875534333332233321 23499999999999765322 2222333321 12357999999999999
Q ss_pred HHHHHHHHh
Q 015293 268 EDIRDWILT 276 (409)
Q Consensus 268 ~~L~~~L~~ 276 (409)
+++++.|.+
T Consensus 155 ~~l~~~l~~ 163 (164)
T cd04171 155 EELKEYLDE 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998864
No 27
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.86 E-value=3e-20 Score=163.97 Aligned_cols=160 Identities=26% Similarity=0.315 Sum_probs=118.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh--hhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~--~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|+|||||+|+|++......++.+++|+......+..++..+.+|||||+.+.. ...++..........+..+|
T Consensus 7 i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d 86 (174)
T cd01895 7 IIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERAD 86 (174)
T ss_pred EEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999998877778889999888777777778889999999975321 11122222223445578999
Q ss_pred eEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCCh--hhHHHHHHHHHhcC---CCceEEEcccCCCCCHH
Q 015293 194 CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWYEKFT---DVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 194 villVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~--~~~~~~~~~~~~~~---~~~~iv~iSA~~g~gi~ 268 (409)
++++|+|++++.......+...... .+.|+++++||+|+... .........+.... ...+++++||+++.|++
T Consensus 87 ~vi~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 164 (174)
T cd01895 87 VVLLVIDATEGITEQDLRIAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVD 164 (174)
T ss_pred eEEEEEeCCCCcchhHHHHHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHH
Confidence 9999999988766555444444443 56899999999999865 33333333333322 23579999999999999
Q ss_pred HHHHHHHhh
Q 015293 269 DIRDWILTK 277 (409)
Q Consensus 269 ~L~~~L~~~ 277 (409)
++++++.+.
T Consensus 165 ~~~~~l~~~ 173 (174)
T cd01895 165 KLFDAIDEV 173 (174)
T ss_pred HHHHHHHHh
Confidence 999998754
No 28
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=9.5e-20 Score=196.05 Aligned_cols=165 Identities=22% Similarity=0.248 Sum_probs=125.2
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHH--HHHHHhhc
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMM--KNVRSAGI 190 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~--~~~~~~~~ 190 (409)
.+ ++|+||||||||+|+|++.+...+++.++||++.....+..++.++.||||||+...........+. -....++.
T Consensus 452 kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~ 531 (712)
T PRK09518 452 RVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIE 531 (712)
T ss_pred EEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhh
Confidence 44 9999999999999999999988889999999999888888888899999999975321111111111 12345678
Q ss_pred CcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCceEEEcccCCCCCH
Q 015293 191 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 191 ~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~---~~~~~~iv~iSA~~g~gi 267 (409)
.||++++|+|++++...++..+...+.. .++|+++|+||+|+.+..........+.. ...+.+++++||++|.|+
T Consensus 532 ~advvilViDat~~~s~~~~~i~~~~~~--~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv 609 (712)
T PRK09518 532 RSELALFLFDASQPISEQDLKVMSMAVD--AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHT 609 (712)
T ss_pred cCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCH
Confidence 9999999999999887766666555544 67999999999999864432222222221 224567899999999999
Q ss_pred HHHHHHHHhhCCC
Q 015293 268 EDIRDWILTKLPL 280 (409)
Q Consensus 268 ~~L~~~L~~~l~~ 280 (409)
++|++.+.+.++.
T Consensus 610 ~~L~~~i~~~~~~ 622 (712)
T PRK09518 610 NRLAPAMQEALES 622 (712)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988763
No 29
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.85 E-value=8.6e-21 Score=165.62 Aligned_cols=156 Identities=26% Similarity=0.323 Sum_probs=109.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
|+|++|||||||+|++.+.. ..++..+++|.+.....+..++..+.+|||||+........+..+....... ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEE
Confidence 58999999999999999987 3467889999988777778888899999999964322111222222222222 589999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~ 275 (409)
++|+|+++.... ..+ ...+.. .++|+++|+||+|+.....+......+....+ .+++++||.+|.|+++++++|.
T Consensus 79 i~v~d~~~~~~~-~~~-~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~iSa~~~~~~~~l~~~l~ 153 (158)
T cd01879 79 VNVVDATNLERN-LYL-TLQLLE--LGLPVVVALNMIDEAEKRGIKIDLDKLSELLG-VPVVPTSARKGEGIDELKDAIA 153 (158)
T ss_pred EEEeeCCcchhH-HHH-HHHHHH--cCCCEEEEEehhhhcccccchhhHHHHHHhhC-CCeEEEEccCCCCHHHHHHHHH
Confidence 999999875322 222 222333 57899999999999764433222222322222 3789999999999999999998
Q ss_pred hhC
Q 015293 276 TKL 278 (409)
Q Consensus 276 ~~l 278 (409)
..+
T Consensus 154 ~~~ 156 (158)
T cd01879 154 ELA 156 (158)
T ss_pred HHh
Confidence 754
No 30
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.85 E-value=5.9e-21 Score=193.99 Aligned_cols=152 Identities=28% Similarity=0.339 Sum_probs=116.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|+||||||||+|+|++...+++++.|+||++.....+..++.++.+|||||+.. ....++...+.....+++.+|++
T Consensus 208 IvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~-~~~~ie~~gi~~~~~~~~~aD~i 286 (442)
T TIGR00450 208 IVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIRE-HADFVERLGIEKSFKAIKQADLV 286 (442)
T ss_pred EECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCccc-chhHHHHHHHHHHHHHHhhCCEE
Confidence 99999999999999999998888999999999999888888999999999999753 33445555566677888999999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~ 275 (409)
++|+|++++......+ +..+.. .++|+++|+||+|+... +... +....+ .+++.+||++ .||+++++.|.
T Consensus 287 l~V~D~s~~~s~~~~~-l~~~~~--~~~piIlV~NK~Dl~~~-~~~~----~~~~~~-~~~~~vSak~-~gI~~~~~~L~ 356 (442)
T TIGR00450 287 IYVLDASQPLTKDDFL-IIDLNK--SKKPFILVLNKIDLKIN-SLEF----FVSSKV-LNSSNLSAKQ-LKIKALVDLLT 356 (442)
T ss_pred EEEEECCCCCChhHHH-HHHHhh--CCCCEEEEEECccCCCc-chhh----hhhhcC-CceEEEEEec-CCHHHHHHHHH
Confidence 9999998876544433 333333 57899999999999654 2211 111111 3678999998 58888777776
Q ss_pred hhC
Q 015293 276 TKL 278 (409)
Q Consensus 276 ~~l 278 (409)
+.+
T Consensus 357 ~~i 359 (442)
T TIGR00450 357 QKI 359 (442)
T ss_pred HHH
Confidence 654
No 31
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=4.4e-21 Score=189.14 Aligned_cols=162 Identities=30% Similarity=0.340 Sum_probs=127.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
|+|+||||||||+|+|....+++|++.+|||||.+...++.+|+++.|+||+|++.+..+.+++.++++++..+..||++
T Consensus 273 IvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi 352 (531)
T KOG1191|consen 273 IVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVI 352 (531)
T ss_pred EEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEE
Confidence 99999999999999999999999999999999999999999999999999999987677889999999999999999999
Q ss_pred EEEeeCCCCCChHHHHHHHHhcc----C------CCCCCEEEEEecCCCCChh-hHHH----HHHHHHhcCCCceEEEcc
Q 015293 196 VVLVDACKAPERIDEILEEGVGD----H------KDKLPILLVLNKKDLIKPG-EIAK----KLEWYEKFTDVDEVIPVS 260 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~----~------~~~~p~ilvlNK~Dl~~~~-~~~~----~~~~~~~~~~~~~iv~iS 260 (409)
++|+|+.......+..+.+.+.. . ..+.|++++.||+|+..+- +... .... .....+..+..+|
T Consensus 353 ~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~~i~~~vs 431 (531)
T KOG1191|consen 353 LLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVFPIVVEVS 431 (531)
T ss_pred EEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCcccceEEEee
Confidence 99999965443332222222211 0 1458999999999997641 1111 0111 1112333456699
Q ss_pred cCCCCCHHHHHHHHHhhC
Q 015293 261 AKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 261 A~~g~gi~~L~~~L~~~l 278 (409)
|++++|++.|...|.+.+
T Consensus 432 ~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 432 CTTKEGCERLSTALLNIV 449 (531)
T ss_pred echhhhHHHHHHHHHHHH
Confidence 999999999999998765
No 32
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.85 E-value=4.6e-20 Score=160.35 Aligned_cols=151 Identities=31% Similarity=0.457 Sum_probs=116.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|++|+|||||+|+|++...+.+++.+++|.+.....+...+..+.+|||||+.... ..+...........+..+|++
T Consensus 6 l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-~~~~~~~~~~~~~~~~~~~~~ 84 (157)
T cd04164 6 IVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETE-DEIEKIGIERAREAIEEADLV 84 (157)
T ss_pred EECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCc-chHHHHHHHHHHHHHhhCCEE
Confidence 9999999999999999999887788899999888777777778899999999975422 233333444555667899999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~ 275 (409)
++|+|++.+........... . ...|+++|+||+|+...... . ......+++++||+++.|+++|+++|.
T Consensus 85 v~v~d~~~~~~~~~~~~~~~--~--~~~~vi~v~nK~D~~~~~~~------~-~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 153 (157)
T cd04164 85 LFVIDASRGLDEEDLEILEL--P--ADKPIIVVLNKSDLLPDSEL------L-SLLAGKPIIAISAKTGEGLDELKEALL 153 (157)
T ss_pred EEEEECCCCCCHHHHHHHHh--h--cCCCEEEEEEchhcCCcccc------c-cccCCCceEEEECCCCCCHHHHHHHHH
Confidence 99999997665544433332 2 67999999999999865433 1 111234799999999999999999998
Q ss_pred hhC
Q 015293 276 TKL 278 (409)
Q Consensus 276 ~~l 278 (409)
+.+
T Consensus 154 ~~~ 156 (157)
T cd04164 154 ELA 156 (157)
T ss_pred Hhh
Confidence 754
No 33
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=2.3e-20 Score=190.07 Aligned_cols=160 Identities=23% Similarity=0.248 Sum_probs=115.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
|||.||||||||+|+|++.+.. ++++|+||+++..+.+..++.++.|+||||+...... ...+.......+..||++
T Consensus 164 LVG~PNAGKSTLln~Ls~akpk-IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~--g~gLg~~fLrhieradvL 240 (500)
T PRK12296 164 LVGFPSAGKSSLISALSAAKPK-IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASE--GKGLGLDFLRHIERCAVL 240 (500)
T ss_pred EEEcCCCCHHHHHHHHhcCCcc-ccccCcccccceEEEEEECCeEEEEEECCCCccccch--hhHHHHHHHHHHHhcCEE
Confidence 9999999999999999998764 6899999999999999988899999999998642211 111222344567889999
Q ss_pred EEEeeCCCCC------ChHH---HHHHHHhcc--------CCCCCCEEEEEecCCCCChhhHHHHH-HHHHhcCCCceEE
Q 015293 196 VVLVDACKAP------ERID---EILEEGVGD--------HKDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDVDEVI 257 (409)
Q Consensus 196 llVvD~~~~~------~~~~---~~l~~~l~~--------~~~~~p~ilvlNK~Dl~~~~~~~~~~-~~~~~~~~~~~iv 257 (409)
|+|+|+++.. .... .++...... ....+|+|||+||+|+.....+.... ..+... + .+++
T Consensus 241 v~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~-g-~~Vf 318 (500)
T PRK12296 241 VHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEAR-G-WPVF 318 (500)
T ss_pred EEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHc-C-CeEE
Confidence 9999997521 1111 122222210 01468999999999997654433322 223222 2 4799
Q ss_pred EcccCCCCCHHHHHHHHHhhCCC
Q 015293 258 PVSAKYGHGVEDIRDWILTKLPL 280 (409)
Q Consensus 258 ~iSA~~g~gi~~L~~~L~~~l~~ 280 (409)
++||++++|+++|+.+|.+.+..
T Consensus 319 ~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 319 EVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred EEECCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999987754
No 34
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.85 E-value=9e-21 Score=168.49 Aligned_cols=159 Identities=30% Similarity=0.368 Sum_probs=110.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC-CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~-~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|++|||||||+|+|.+.+. .++..+++|.+...+.+..+ +.++.+|||||+...... ...+...+...+..+|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--~~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASE--GRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhc--CCCccHHHHHHHhccCE
Confidence 589999999999999999887 56788899988887777777 899999999997431110 01112233445678999
Q ss_pred EEEEeeCCCCC-----ChH---HHHHHHHhccC-------CCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEc
Q 015293 195 IVVLVDACKAP-----ERI---DEILEEGVGDH-------KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPV 259 (409)
Q Consensus 195 illVvD~~~~~-----~~~---~~~l~~~l~~~-------~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~i 259 (409)
+++|+|+++.. ... ..+........ ..++|+++|+||+|+....................+++++
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPI 157 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEE
Confidence 99999998763 221 11222221111 0368999999999998665544331111222234579999
Q ss_pred ccCCCCCHHHHHHHHHhh
Q 015293 260 SAKYGHGVEDIRDWILTK 277 (409)
Q Consensus 260 SA~~g~gi~~L~~~L~~~ 277 (409)
||++|.|+++++++|...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998764
No 35
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.84 E-value=2.8e-20 Score=182.36 Aligned_cols=157 Identities=27% Similarity=0.353 Sum_probs=115.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC-eeEEEEeCCCCchhhhh--hHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIH--MLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~-~~i~liDtpG~~~~~~~--~l~~~~~~~~~~~~~~a 192 (409)
|||.||||||||+|+|++.+.. ++++|+||..+..+.+..++ .++.++||||+...... .+.. .+...+..|
T Consensus 162 lvG~pnaGKSTLl~~lt~~~~~-va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~----~flrhiera 236 (329)
T TIGR02729 162 LVGLPNAGKSTLISAVSAAKPK-IADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGH----RFLKHIERT 236 (329)
T ss_pred EEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHH----HHHHHHHhh
Confidence 9999999999999999988753 78999999999999888776 89999999998642211 2333 334456789
Q ss_pred ceEEEEeeCCCCC----ChHHHHHHHHhccCC---CCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCC
Q 015293 193 DCIVVLVDACKAP----ERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 265 (409)
Q Consensus 193 DvillVvD~~~~~----~~~~~~l~~~l~~~~---~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~ 265 (409)
|++++|+|+++.. ......+.+.+..+. .++|+++|+||+|+............+....+ .+++++||++++
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~-~~vi~iSAktg~ 315 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALG-KPVFPISALTGE 315 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcC-CcEEEEEccCCc
Confidence 9999999998641 112222322222221 46899999999999876555444444443323 378999999999
Q ss_pred CHHHHHHHHHhhC
Q 015293 266 GVEDIRDWILTKL 278 (409)
Q Consensus 266 gi~~L~~~L~~~l 278 (409)
|+++|+++|.+.+
T Consensus 316 GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 GLDELLYALAELL 328 (329)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 36
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.84 E-value=2e-19 Score=167.08 Aligned_cols=190 Identities=16% Similarity=0.197 Sum_probs=127.1
Q ss_pred eeE-EEecCCCChHHHHHHHhCCccee-eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~-v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
.++ ++|.+|||||||+++++..++.. ..++.+.+..............+.+|||||. +.+..+. ..+++
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~-------~~~~~ 84 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ--EKFGGLR-------DGYYI 84 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCc--hhhhhhh-------HHHcc
Confidence 345 99999999999999988766532 2334444443333223334578999999994 3433332 23478
Q ss_pred CcceEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 191 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 191 ~aDvillVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
.+|++|+|+|.++.. .....|+... .....+.|+++|+||+|+...........+ ....+ .+++++||++|.|++
T Consensus 85 ~~~~~ilvfD~~~~~s~~~i~~w~~~i-~~~~~~~piilvgNK~Dl~~~~v~~~~~~~-~~~~~-~~~~e~SAk~~~~i~ 161 (219)
T PLN03071 85 HGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQVTF-HRKKN-LQYYEISAKSNYNFE 161 (219)
T ss_pred cccEEEEEEeCCCHHHHHHHHHHHHHH-HHhCCCCcEEEEEEchhhhhccCCHHHHHH-HHhcC-CEEEEcCCCCCCCHH
Confidence 999999999998764 2222333332 222367999999999998532211111222 22222 478999999999999
Q ss_pred HHHHHHHhhCC--------CCCCCCCCccccCchHHHHHHHHHHHHHHhhcCCC
Q 015293 269 DIRDWILTKLP--------LGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNE 314 (409)
Q Consensus 269 ~L~~~L~~~l~--------~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~~~~e 314 (409)
++|.+|.+.+. +++..+++.+..+.+......+.+++.....+..+
T Consensus 162 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (219)
T PLN03071 162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAAQPLPDD 215 (219)
T ss_pred HHHHHHHHHHHcCcchhcccccccCCcccCCCHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999997663 45677787778888888778888888775554443
No 37
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.83 E-value=1.3e-19 Score=158.96 Aligned_cols=152 Identities=21% Similarity=0.254 Sum_probs=105.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|++|||||||+|++++.++.. +..+.++.+.....+..++ .++.+|||||. ..+.. .....+..+|
T Consensus 5 liG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~--~~~~~-------~~~~~~~~~~ 74 (161)
T cd01861 5 FLGDQSVGKTSIITRFMYDTFDN-QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ--ERFRS-------LIPSYIRDSS 74 (161)
T ss_pred EECCCCCCHHHHHHHHHcCCCCc-cCCCceeeeEEEEEEEECCEEEEEEEEECCCc--HHHHH-------HHHHHhccCC
Confidence 89999999999999999988753 5566666666655555444 56899999993 33322 2344578999
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh-HHHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~-~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
++++|+|++++. .....++.........+.|+++|+||+|+..... .......+....+ .+++++||++|.|+++|
T Consensus 75 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l 153 (161)
T cd01861 75 VAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELN-AMFIETSAKAGHNVKEL 153 (161)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhC-CEEEEEeCCCCCCHHHH
Confidence 999999998754 3333444433333223599999999999953221 1111222222223 57899999999999999
Q ss_pred HHHHHhhC
Q 015293 271 RDWILTKL 278 (409)
Q Consensus 271 ~~~L~~~l 278 (409)
+++|.+.+
T Consensus 154 ~~~i~~~l 161 (161)
T cd01861 154 FRKIASAL 161 (161)
T ss_pred HHHHHHhC
Confidence 99998753
No 38
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.83 E-value=6.6e-20 Score=184.44 Aligned_cols=161 Identities=26% Similarity=0.310 Sum_probs=115.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC-CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~-~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
|+|.||||||||+|+|++.+.. ++++|+||..+..+.+... +..+.++||||+...... ...+...+...+..||+
T Consensus 163 lVG~pNaGKSTLLn~Lt~ak~k-Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~--~~gLg~~fLrhier~~l 239 (424)
T PRK12297 163 LVGFPNVGKSTLLSVVSNAKPK-IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE--GVGLGHQFLRHIERTRV 239 (424)
T ss_pred EEcCCCCCHHHHHHHHHcCCCc-cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc--cchHHHHHHHHHhhCCE
Confidence 9999999999999999998864 6889999999999888776 789999999998642211 11122334455678999
Q ss_pred EEEEeeCCCC----CChHHHHHHHHhccCC---CCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCH
Q 015293 195 IVVLVDACKA----PERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 195 illVvD~~~~----~~~~~~~l~~~l~~~~---~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi 267 (409)
+++|+|+++. +......+.+.+..+. .++|++||+||+|+..... ....+....+ .+++++||++++|+
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e---~l~~l~~~l~-~~i~~iSA~tgeGI 315 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEE---NLEEFKEKLG-PKVFPISALTGQGL 315 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHH---HHHHHHHHhC-CcEEEEeCCCCCCH
Confidence 9999999753 1112233333333321 4689999999999854321 1122222222 47899999999999
Q ss_pred HHHHHHHHhhCCCCCC
Q 015293 268 EDIRDWILTKLPLGPA 283 (409)
Q Consensus 268 ~~L~~~L~~~l~~~~~ 283 (409)
++|+++|.+.+...+.
T Consensus 316 ~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 316 DELLYAVAELLEETPE 331 (424)
T ss_pred HHHHHHHHHHHHhCcc
Confidence 9999999988875543
No 39
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.83 E-value=1.2e-19 Score=164.98 Aligned_cols=154 Identities=23% Similarity=0.217 Sum_probs=105.9
Q ss_pred EEecCCCChHHHHHHHhCC------cceeeecCCCceEEEEEEEEeCC--------------CeeEEEEeCCCCchhhhh
Q 015293 116 VLGKPNVGKSTLANQMIGQ------KLSIVTNKPQTTRHRILGICSGP--------------EYQMILYDTPGIIEKKIH 175 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~------~~~~v~~~~~tt~~~~~~~~~~~--------------~~~i~liDtpG~~~~~~~ 175 (409)
++|++|+|||||+++|++. .....+..+++|.+.....+.+. +..+.+|||||+. .
T Consensus 5 i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~--~-- 80 (192)
T cd01889 5 VLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA--S-- 80 (192)
T ss_pred EEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH--H--
Confidence 8999999999999999973 12223445567766554433333 6789999999952 1
Q ss_pred hHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHH----HHHHHHhc-
Q 015293 176 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK----KLEWYEKF- 250 (409)
Q Consensus 176 ~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~----~~~~~~~~- 250 (409)
+.+.....+..+|++++|+|++++.............. .+.|+++|+||+|+........ ..+.+...
T Consensus 81 -----~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~ 153 (192)
T cd01889 81 -----LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTL 153 (192)
T ss_pred -----HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHH
Confidence 33445555678999999999998765544333333332 4679999999999975433222 22221111
Q ss_pred ----CCCceEEEcccCCCCCHHHHHHHHHhhCCC
Q 015293 251 ----TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 280 (409)
Q Consensus 251 ----~~~~~iv~iSA~~g~gi~~L~~~L~~~l~~ 280 (409)
....+++++||++|.|+++|+++|...++.
T Consensus 154 ~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 154 EKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 123579999999999999999999998863
No 40
>PRK11058 GTPase HflX; Provisional
Probab=99.83 E-value=9.3e-20 Score=184.27 Aligned_cols=158 Identities=23% Similarity=0.284 Sum_probs=112.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCe-eEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~-~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
|+|+||||||||+|+|++.++. +++.+++|.++....+...+. .+.+|||||+.......+...+ ..+...+..||+
T Consensus 202 lVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f-~~tl~~~~~ADl 279 (426)
T PRK11058 202 LVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAF-KATLQETRQATL 279 (426)
T ss_pred EECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHH-HHHHHHhhcCCE
Confidence 9999999999999999999876 788999999988777666554 8999999998543223333333 335566789999
Q ss_pred EEEEeeCCCCCChHH-HHHHHHhccCC-CCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHH
Q 015293 195 IVVLVDACKAPERID-EILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 272 (409)
Q Consensus 195 illVvD~~~~~~~~~-~~l~~~l~~~~-~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~ 272 (409)
+|+|+|++++..... ..+...+.... .++|+++|+||+|+....... ..... .+...++++||++|.|+++|++
T Consensus 280 IL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~--~~~~~--~~~~~~v~ISAktG~GIdeL~e 355 (426)
T PRK11058 280 LLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPR--IDRDE--ENKPIRVWLSAQTGAGIPLLFQ 355 (426)
T ss_pred EEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHH--HHHHh--cCCCceEEEeCCCCCCHHHHHH
Confidence 999999998753222 11222222211 478999999999997532111 11111 1222358899999999999999
Q ss_pred HHHhhCC
Q 015293 273 WILTKLP 279 (409)
Q Consensus 273 ~L~~~l~ 279 (409)
+|.+.+.
T Consensus 356 ~I~~~l~ 362 (426)
T PRK11058 356 ALTERLS 362 (426)
T ss_pred HHHHHhh
Confidence 9998875
No 41
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.83 E-value=5.2e-20 Score=166.80 Aligned_cols=152 Identities=26% Similarity=0.402 Sum_probs=110.8
Q ss_pred EEecCCCChHHHHHHHhCCccee-----------------eecCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-----------------VTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHM 176 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-----------------v~~~~~tt~~~~~~~~~--~~~~~i~liDtpG~~~~~~~~ 176 (409)
++|+.++|||||+++|++..... .....+.|.+.....+. ..+..+.|+||||+..
T Consensus 8 i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~----- 82 (188)
T PF00009_consen 8 IIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED----- 82 (188)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH-----
T ss_pred EECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc-----
Confidence 99999999999999998544211 01112334433344444 6788999999999532
Q ss_pred HhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHH-----hc-
Q 015293 177 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE-----KF- 250 (409)
Q Consensus 177 l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~-----~~- 250 (409)
+...+..++..+|++|+|+|+..+...+...++..+.. .+.|+++|+||+|+.. .......+.+. ..
T Consensus 83 ----f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~--~~~p~ivvlNK~D~~~-~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 83 ----FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRE--LGIPIIVVLNKMDLIE-KELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp ----HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHH--TT-SEEEEEETCTSSH-HHHHHHHHHHHHHHHHHTT
T ss_pred ----eeecccceecccccceeeeecccccccccccccccccc--cccceEEeeeeccchh-hhHHHHHHHHHHHhccccc
Confidence 44556667899999999999999998888888877776 7899999999999983 23222222221 11
Q ss_pred -C--CCceEEEcccCCCCCHHHHHHHHHhhCC
Q 015293 251 -T--DVDEVIPVSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 251 -~--~~~~iv~iSA~~g~gi~~L~~~L~~~l~ 279 (409)
. ...+++++||.+|.|+++|++.|.+.+|
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 1 2468999999999999999999999887
No 42
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.83 E-value=2.5e-19 Score=164.12 Aligned_cols=156 Identities=28% Similarity=0.377 Sum_probs=107.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCe-eEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~-~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
|+|++|||||||+|+|++.... +...+++|.+.....+..++. .+.+|||||+.......+...+ ......+..+|+
T Consensus 46 iiG~~g~GKStLl~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~-~~~~~~~~~~d~ 123 (204)
T cd01878 46 LVGYTNAGKSTLFNALTGADVY-AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAF-RSTLEEVAEADL 123 (204)
T ss_pred EECCCCCCHHHHHHHHhcchhc-cCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHH-HHHHHHHhcCCe
Confidence 9999999999999999998753 455666676666555555444 8999999997542222222222 223345678999
Q ss_pred EEEEeeCCCCCChHH-HHHHHHhccCC-CCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHH
Q 015293 195 IVVLVDACKAPERID-EILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 272 (409)
Q Consensus 195 illVvD~~~~~~~~~-~~l~~~l~~~~-~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~ 272 (409)
+++|+|++++..... ..+.+.+.... .++|+++|+||+|+....... .... ....+++++||++|.|++++++
T Consensus 124 ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~--~~~~~~~~~Sa~~~~gi~~l~~ 198 (204)
T cd01878 124 LLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLE--AGRPDAVFISAKTGEGLDELLE 198 (204)
T ss_pred EEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhh--cCCCceEEEEcCCCCCHHHHHH
Confidence 999999987653322 22223332221 468999999999997654433 1221 2345789999999999999999
Q ss_pred HHHhhC
Q 015293 273 WILTKL 278 (409)
Q Consensus 273 ~L~~~l 278 (409)
+|...+
T Consensus 199 ~L~~~~ 204 (204)
T cd01878 199 AIEELL 204 (204)
T ss_pred HHHhhC
Confidence 998653
No 43
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.83 E-value=1.8e-19 Score=161.78 Aligned_cols=153 Identities=22% Similarity=0.278 Sum_probs=110.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeee---------------cCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVT---------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSM 180 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~---------------~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~ 180 (409)
++|.+|+|||||+|+|++....... ...++|.+.....+...+..+.||||||+.+
T Consensus 4 v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~--------- 74 (189)
T cd00881 4 IAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED--------- 74 (189)
T ss_pred EEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH---------
Confidence 8999999999999999887654321 1234555555555666778999999999632
Q ss_pred HHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHH----HHHHHhc------
Q 015293 181 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK----LEWYEKF------ 250 (409)
Q Consensus 181 ~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~----~~~~~~~------ 250 (409)
+...+..++..+|++++|+|++++.......+...+.. .+.|+++|+||+|+......... .+.+...
T Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (189)
T cd00881 75 FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTK 152 (189)
T ss_pred HHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchh
Confidence 12234455679999999999998776555555555544 67999999999999864332222 2222221
Q ss_pred ------CCCceEEEcccCCCCCHHHHHHHHHhhCC
Q 015293 251 ------TDVDEVIPVSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 251 ------~~~~~iv~iSA~~g~gi~~L~~~L~~~l~ 279 (409)
....+++++||++|.|+++++++|.+.++
T Consensus 153 ~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 153 EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred hhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 12468999999999999999999999886
No 44
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.83 E-value=2.1e-19 Score=160.66 Aligned_cols=152 Identities=28% Similarity=0.328 Sum_probs=99.6
Q ss_pred EEecCCCChHHHHHHHhCCccee--------ee------cCCCceEEEEEEEE-----eCCCeeEEEEeCCCCchhhhhh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI--------VT------NKPQTTRHRILGIC-----SGPEYQMILYDTPGIIEKKIHM 176 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~--------v~------~~~~tt~~~~~~~~-----~~~~~~i~liDtpG~~~~~~~~ 176 (409)
++|++|+|||||+++|++....+ .. ...+.|.......+ ...+..+.||||||+.. +
T Consensus 5 ~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~-- 80 (179)
T cd01890 5 IIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD--F-- 80 (179)
T ss_pred EEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh--h--
Confidence 89999999999999998753211 11 12234444332222 34567889999999632 2
Q ss_pred HhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCC--Cc
Q 015293 177 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD--VD 254 (409)
Q Consensus 177 l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~--~~ 254 (409)
...+..++..+|++|+|+|++++........+..+.. .++|+++|+||+|+..... ......+....+ ..
T Consensus 81 -----~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~ 152 (179)
T cd01890 81 -----SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE--NNLEIIPVINKIDLPSADP-ERVKQQIEDVLGLDPS 152 (179)
T ss_pred -----HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH--cCCCEEEEEECCCCCcCCH-HHHHHHHHHHhCCCcc
Confidence 2234455788999999999988764433322222222 5789999999999864321 111122222222 23
Q ss_pred eEEEcccCCCCCHHHHHHHHHhhCC
Q 015293 255 EVIPVSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 255 ~iv~iSA~~g~gi~~L~~~L~~~l~ 279 (409)
.++++||++|.|+++|+++|.+.++
T Consensus 153 ~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 153 EAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred cEEEeeccCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999998875
No 45
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.83 E-value=1.5e-19 Score=159.68 Aligned_cols=152 Identities=22% Similarity=0.295 Sum_probs=101.0
Q ss_pred EEecCCCChHHHHHHHhCCcce---eeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLS---IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~---~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++|++|+|||||+|+|.+.... .......+|.......+..++..+.+|||||.. .+. ..+...+..+
T Consensus 4 ~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~--~~~-------~~~~~~~~~~ 74 (167)
T cd04160 4 ILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQE--SLR-------SLWDKYYAEC 74 (167)
T ss_pred EEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCCh--hhH-------HHHHHHhCCC
Confidence 8999999999999999875432 112223344443344556678899999999953 222 2234457899
Q ss_pred ceEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHHhcC-----CCceEEEcccCCC
Q 015293 193 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT-----DVDEVIPVSAKYG 264 (409)
Q Consensus 193 DvillVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~-----~~~~iv~iSA~~g 264 (409)
|++++|+|+++.. .....++...++.. ..+.|+++|+||+|+............+.... ...+++++||++|
T Consensus 75 ~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 75 HAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred CEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 9999999997653 22222333333321 15789999999999876543333333332211 2247999999999
Q ss_pred CCHHHHHHHHHh
Q 015293 265 HGVEDIRDWILT 276 (409)
Q Consensus 265 ~gi~~L~~~L~~ 276 (409)
+|+++++++|.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999874
No 46
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.83 E-value=1.5e-19 Score=164.19 Aligned_cols=161 Identities=20% Similarity=0.179 Sum_probs=104.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCce-EEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt-~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++|.+|||||||++++.+..+.. ...+.|+ .+.....+..+ ..++.+||||| +..+..+ ...++..+
T Consensus 5 vvG~~~vGKTSli~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~~~-------~~~~~~~a 74 (191)
T cd04112 5 LLGDSGVGKTCLLVRFKDGAFLN-GNFIATVGIDFRNKVVTVDGVKVKLQIWDTAG--QERFRSV-------THAYYRDA 74 (191)
T ss_pred EECCCCCCHHHHHHHHhcCCCCc-cCcCCcccceeEEEEEEECCEEEEEEEEeCCC--cHHHHHh-------hHHHccCC
Confidence 89999999999999999887642 2223232 23222223333 36789999999 4333322 33457889
Q ss_pred ceEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 193 DCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 193 DvillVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~-~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
|++++|+|+++... ....++.........+.|+++|+||+|+...... ......+....+ .+++++||++|.|+++
T Consensus 75 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~-~~~~e~Sa~~~~~v~~ 153 (191)
T cd04112 75 HALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYG-VPFMETSAKTGLNVEL 153 (191)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHH
Confidence 99999999987542 2223332222222247899999999999642211 111222222223 3799999999999999
Q ss_pred HHHHHHhhCCCCCCCCCC
Q 015293 270 IRDWILTKLPLGPAYYPK 287 (409)
Q Consensus 270 L~~~L~~~l~~~~~~~~~ 287 (409)
|+.+|.+.+...++.++.
T Consensus 154 l~~~l~~~~~~~~~~~~~ 171 (191)
T cd04112 154 AFTAVAKELKHRKYEQPD 171 (191)
T ss_pred HHHHHHHHHHHhccccCC
Confidence 999999988776655543
No 47
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.82 E-value=3.9e-19 Score=156.87 Aligned_cols=152 Identities=20% Similarity=0.232 Sum_probs=106.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC---CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP---EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~---~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++|++|+|||||+|+|.+..+.. ...+++|.+.....+..+ +..+.+|||||. ..+..+ ....+..+
T Consensus 5 iiG~~~~GKtsli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~--~~~~~~-------~~~~~~~~ 74 (168)
T cd01887 5 VMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGH--EAFTNM-------RARGASLT 74 (168)
T ss_pred EEecCCCCHHHHHHHHHhccccc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCc--HHHHHH-------HHHHHhhc
Confidence 89999999999999999887653 344566766554455543 678999999994 333222 22346789
Q ss_pred ceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChh--hHHHHHHHHH-----hcCCCceEEEcccCCCC
Q 015293 193 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYE-----KFTDVDEVIPVSAKYGH 265 (409)
Q Consensus 193 DvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~--~~~~~~~~~~-----~~~~~~~iv~iSA~~g~ 265 (409)
|++++|+|++++...........+.. .++|+++|+||+|+.... ........+. ......+++++||++|.
T Consensus 75 d~il~v~d~~~~~~~~~~~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (168)
T cd01887 75 DIAILVVAADDGVMPQTIEAIKLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGE 152 (168)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCC
Confidence 99999999988765444444444444 678999999999987432 1222122111 11223579999999999
Q ss_pred CHHHHHHHHHhhCC
Q 015293 266 GVEDIRDWILTKLP 279 (409)
Q Consensus 266 gi~~L~~~L~~~l~ 279 (409)
|+++|+++|.+...
T Consensus 153 gi~~l~~~l~~~~~ 166 (168)
T cd01887 153 GIDDLLEAILLLAE 166 (168)
T ss_pred CHHHHHHHHHHhhh
Confidence 99999999987653
No 48
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.82 E-value=2.6e-19 Score=159.20 Aligned_cols=155 Identities=16% Similarity=0.189 Sum_probs=105.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|.+|||||||++++.+..+. . + .+|.......+...+..+.+|||||.. .+. ..+..++..+|++
T Consensus 4 lvG~~~~GKTsl~~~l~~~~~~--~-~-~~T~~~~~~~~~~~~~~i~l~Dt~G~~--~~~-------~~~~~~~~~ad~i 70 (169)
T cd04158 4 TLGLDGAGKTTILFKLKQDEFM--Q-P-IPTIGFNVETVEYKNLKFTIWDVGGKH--KLR-------PLWKHYYLNTQAV 70 (169)
T ss_pred EECCCCCCHHHHHHHHhcCCCC--C-c-CCcCceeEEEEEECCEEEEEEECCCCh--hcc-------hHHHHHhccCCEE
Confidence 8999999999999999987542 2 2 223222223455677899999999952 222 2234457899999
Q ss_pred EEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHHhc----CCCceEEEcccCCCCCHH
Q 015293 196 VVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF----TDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 196 llVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~----~~~~~iv~iSA~~g~gi~ 268 (409)
++|+|+++.. .....++...++.. ..+.|++||+||+|+................ .....++++||++|.|++
T Consensus 71 i~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 150 (169)
T cd04158 71 VFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLY 150 (169)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHH
Confidence 9999998753 33444555554431 1458999999999996543333333332211 112367899999999999
Q ss_pred HHHHHHHhhCCCCCC
Q 015293 269 DIRDWILTKLPLGPA 283 (409)
Q Consensus 269 ~L~~~L~~~l~~~~~ 283 (409)
+++++|.+.+.++++
T Consensus 151 ~~f~~l~~~~~~~~~ 165 (169)
T cd04158 151 EGLDWLSRQLVAAGV 165 (169)
T ss_pred HHHHHHHHHHhhccc
Confidence 999999988876654
No 49
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.82 E-value=6.8e-19 Score=157.00 Aligned_cols=159 Identities=27% Similarity=0.312 Sum_probs=119.5
Q ss_pred EEecCCCChHHHHHHHhCCc-ceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh-hhhHhHHHHHHHHHhh---c
Q 015293 116 VLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK-IHMLDSMMMKNVRSAG---I 190 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~-~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~-~~~l~~~~~~~~~~~~---~ 190 (409)
++|++|||||||||+|++.+ .+.+|.+||.|+......+. ..+.|+|.||+.-.. .......+.+.+..++ .
T Consensus 29 F~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~---~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~ 105 (200)
T COG0218 29 FAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD---DELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRA 105 (200)
T ss_pred EEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec---CcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhch
Confidence 99999999999999999966 68899999999987766554 338999999985421 1122222222233333 3
Q ss_pred CcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHh----cCCCc-eEEEcccCCCC
Q 015293 191 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK----FTDVD-EVIPVSAKYGH 265 (409)
Q Consensus 191 ~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~----~~~~~-~iv~iSA~~g~ 265 (409)
.-.++++++|+.+++...+.++.+.+.. .+.|+++|+||+|.++..+....+..... ..... .++.+|+.++.
T Consensus 106 ~L~~vvlliD~r~~~~~~D~em~~~l~~--~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~ 183 (200)
T COG0218 106 NLKGVVLLIDARHPPKDLDREMIEFLLE--LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKK 183 (200)
T ss_pred hheEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEeccccc
Confidence 4678999999999999988888888887 89999999999999987666544433332 12211 17889999999
Q ss_pred CHHHHHHHHHhhCC
Q 015293 266 GVEDIRDWILTKLP 279 (409)
Q Consensus 266 gi~~L~~~L~~~l~ 279 (409)
|+++|...|.+.+.
T Consensus 184 Gi~~l~~~i~~~~~ 197 (200)
T COG0218 184 GIDELKAKILEWLK 197 (200)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999988764
No 50
>PRK04213 GTP-binding protein; Provisional
Probab=99.82 E-value=5.4e-19 Score=161.44 Aligned_cols=157 Identities=27% Similarity=0.356 Sum_probs=102.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh------hhhHhHHHHHHHHHhh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK------IHMLDSMMMKNVRSAG 189 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~------~~~l~~~~~~~~~~~~ 189 (409)
++|.+|||||||+|+|.+..+. ++..+++|++.... ..+ .+.+|||||+.... ...++..+...+...+
T Consensus 14 i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (201)
T PRK04213 14 FVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNA 88 (201)
T ss_pred EECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999998754 67788888775433 222 68999999952100 1122222222223345
Q ss_pred cCcceEEEEeeCCCCCC-----------hHHHHHHHHhccCCCCCCEEEEEecCCCCChh--hHHHHHHHHHhcCCC---
Q 015293 190 INADCIVVLVDACKAPE-----------RIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDV--- 253 (409)
Q Consensus 190 ~~aDvillVvD~~~~~~-----------~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~--~~~~~~~~~~~~~~~--- 253 (409)
..+|++++|+|++.... ..+..+...+.. .++|+++|+||+|+.... ....+...+.....+
T Consensus 89 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 166 (201)
T PRK04213 89 DRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQW 166 (201)
T ss_pred hhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcHHHHHHHHHHHhcCCcccccc
Confidence 67899999999865321 122334444443 579999999999997543 122222222110010
Q ss_pred -ceEEEcccCCCCCHHHHHHHHHhhCCC
Q 015293 254 -DEVIPVSAKYGHGVEDIRDWILTKLPL 280 (409)
Q Consensus 254 -~~iv~iSA~~g~gi~~L~~~L~~~l~~ 280 (409)
.+++++||++| |+++++++|.+.+++
T Consensus 167 ~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 167 QDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred CCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 25899999999 999999999988754
No 51
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.82 E-value=4.8e-19 Score=156.43 Aligned_cols=155 Identities=19% Similarity=0.195 Sum_probs=100.0
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhh
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 189 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~ 189 (409)
.++ ++|.+|+|||||++++.+..+..... +..+.+.....+..++ ..+.+||||| +..+. ......+
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~G--~~~~~-------~~~~~~~ 73 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQG-NTIGVDFTMKTLEIEGKRVKLQIWDTAG--QERFR-------TITQSYY 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCC-CccceEEEEEEEEECCEEEEEEEEECCC--hHHHH-------HHHHHHh
Confidence 345 99999999999999998876542211 1111222222333343 5789999999 33322 2234457
Q ss_pred cCcceEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCceEEEcccCCCCC
Q 015293 190 INADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 266 (409)
Q Consensus 190 ~~aDvillVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~-~~~~~~~~~~~~~~~iv~iSA~~g~g 266 (409)
..+|++++|+|++++.. ....++.........+.|+++|+||+|+...... ......+....+...++++||++|.|
T Consensus 74 ~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 153 (165)
T cd01864 74 RSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQN 153 (165)
T ss_pred ccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCC
Confidence 88999999999987642 2223333332222257899999999999754321 11122233333445789999999999
Q ss_pred HHHHHHHHHhh
Q 015293 267 VEDIRDWILTK 277 (409)
Q Consensus 267 i~~L~~~L~~~ 277 (409)
++++++.|.+.
T Consensus 154 v~~~~~~l~~~ 164 (165)
T cd01864 154 VEEAFLLMATE 164 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 52
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.82 E-value=4.5e-19 Score=158.11 Aligned_cols=150 Identities=21% Similarity=0.297 Sum_probs=100.8
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++ ++|++|||||||+++|.+.....+.++.+.. ...+..++..+.+|||||. ..+.. .+..++..+
T Consensus 16 kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~----~~~~~~~~~~l~l~D~~G~--~~~~~-------~~~~~~~~~ 82 (173)
T cd04154 16 RILILGLDNAGKTTILKKLLGEDIDTISPTLGFQ----IKTLEYEGYKLNIWDVGGQ--KTLRP-------YWRNYFEST 82 (173)
T ss_pred EEEEECCCCCCHHHHHHHHccCCCCCcCCccccc----eEEEEECCEEEEEEECCCC--HHHHH-------HHHHHhCCC
Confidence 44 9999999999999999988654333333321 1223345788999999994 33222 234457899
Q ss_pred ceEEEEeeCCCCC--ChHHHHHHHHhcc-CCCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCceEEEcccCCCCC
Q 015293 193 DCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHG 266 (409)
Q Consensus 193 DvillVvD~~~~~--~~~~~~l~~~l~~-~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~---~~~~~~iv~iSA~~g~g 266 (409)
|++++|+|++++. .....++...+.. ...+.|+++|+||+|+.......+....+.. .....+++++||++|.|
T Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 162 (173)
T cd04154 83 DALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEG 162 (173)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcC
Confidence 9999999998763 2223334333322 1257999999999999754333333333321 12335799999999999
Q ss_pred HHHHHHHHHh
Q 015293 267 VEDIRDWILT 276 (409)
Q Consensus 267 i~~L~~~L~~ 276 (409)
+++++++|.+
T Consensus 163 i~~l~~~l~~ 172 (173)
T cd04154 163 LLQGIDWLVD 172 (173)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 53
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.82 E-value=4.1e-19 Score=158.00 Aligned_cols=150 Identities=18% Similarity=0.189 Sum_probs=99.0
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
.+ ++|.+|||||||+++|....+....++.+.+. ..+...+..+.+|||||. ..+..+ +..++..|
T Consensus 11 kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~----~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~~~~a 77 (168)
T cd04149 11 RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNV----ETVTYKNVKFNVWDVGGQ--DKIRPL-------WRHYYTGT 77 (168)
T ss_pred EEEEECcCCCCHHHHHHHHccCCCccccCCcccce----EEEEECCEEEEEEECCCC--HHHHHH-------HHHHhccC
Confidence 44 99999999999999998766532222222222 123346789999999994 333222 33457899
Q ss_pred ceEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHH--h-cCCCceEEEcccCCCCC
Q 015293 193 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE--K-FTDVDEVIPVSAKYGHG 266 (409)
Q Consensus 193 DvillVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~--~-~~~~~~iv~iSA~~g~g 266 (409)
|++++|+|+++.. .....++.+.+... ..+.|++||+||+|+.......+....+. . .....+++++||++|.|
T Consensus 78 ~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~g 157 (168)
T cd04149 78 QGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 157 (168)
T ss_pred CEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCC
Confidence 9999999998753 33334444444321 14689999999999864322222222221 1 11223689999999999
Q ss_pred HHHHHHHHHh
Q 015293 267 VEDIRDWILT 276 (409)
Q Consensus 267 i~~L~~~L~~ 276 (409)
+++++++|.+
T Consensus 158 v~~~~~~l~~ 167 (168)
T cd04149 158 LYEGLTWLSS 167 (168)
T ss_pred hHHHHHHHhc
Confidence 9999999864
No 54
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.81 E-value=3.9e-19 Score=156.05 Aligned_cols=151 Identities=18% Similarity=0.186 Sum_probs=98.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||++++.+..+. ...++|+.+.....+..++ ..+.+|||||. +.+..+. ..+++.+|
T Consensus 6 i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~-------~~~~~~~~ 74 (163)
T cd04136 6 VLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGT--EQFTAMR-------DLYIKNGQ 74 (163)
T ss_pred EECCCCCCHHHHHHHHHhCCCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCc--cccchHH-------HHHhhcCC
Confidence 9999999999999999987653 3444454443333333333 56788999994 3443332 23467899
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhcc-CCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~-~~~~~p~ilvlNK~Dl~~~~~~~-~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
++++|+|+++... ....++...... ...+.|+++|+||+|+.....+. .....+....+ .+++++||++|.|+.+
T Consensus 75 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~ 153 (163)
T cd04136 75 GFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWG-CPFYETSAKSKINVDE 153 (163)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcC-CeEEEecCCCCCCHHH
Confidence 9999999987542 222222222221 11578999999999986532221 11122222223 5899999999999999
Q ss_pred HHHHHHhhC
Q 015293 270 IRDWILTKL 278 (409)
Q Consensus 270 L~~~L~~~l 278 (409)
++++|.+.+
T Consensus 154 l~~~l~~~~ 162 (163)
T cd04136 154 VFADLVRQI 162 (163)
T ss_pred HHHHHHHhc
Confidence 999998754
No 55
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.81 E-value=5.5e-19 Score=154.50 Aligned_cols=150 Identities=21% Similarity=0.177 Sum_probs=98.1
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|++++.++. ....+|+.+.....+..++ ..+.+|||||. +.+..+ ...++..+|
T Consensus 6 iiG~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~l-------~~~~~~~~~ 74 (162)
T cd04138 6 VVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ--EEYSAM-------RDQYMRTGE 74 (162)
T ss_pred EECCCCCCHHHHHHHHHhCCCc--CCcCCcchheEEEEEEECCEEEEEEEEECCCC--cchHHH-------HHHHHhcCC
Confidence 8999999999999999987753 3344444433333333333 45788999994 333333 223567899
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~-~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
++++|+|.++.. .....++....+.. ..+.|+++|+||+|+...... ......... .+ .+++++||++|.|+++
T Consensus 75 ~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~gi~~ 152 (162)
T cd04138 75 GFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKS-YG-IPYIETSAKTRQGVEE 152 (162)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHH-hC-CeEEEecCCCCCCHHH
Confidence 999999998643 22223333322211 157899999999999753221 122222222 22 3789999999999999
Q ss_pred HHHHHHhhC
Q 015293 270 IRDWILTKL 278 (409)
Q Consensus 270 L~~~L~~~l 278 (409)
++++|.+.+
T Consensus 153 l~~~l~~~~ 161 (162)
T cd04138 153 AFYTLVREI 161 (162)
T ss_pred HHHHHHHHh
Confidence 999998654
No 56
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.81 E-value=6.4e-19 Score=152.09 Aligned_cols=158 Identities=32% Similarity=0.369 Sum_probs=115.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC-CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~-~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|++|+|||||+|+|++......+..+++|........... +..+.+|||||+.... .........+...+..+|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~--~~~~~~~~~~~~~~~~~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAG--GLGREREELARRVLERADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccc--cchhhHHHHHHHHHHhCCE
Confidence 589999999999999999887767778888877666665544 6789999999975421 1222122345566789999
Q ss_pred EEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHH---HHHHhcCCCceEEEcccCCCCCHHHHH
Q 015293 195 IVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL---EWYEKFTDVDEVIPVSAKYGHGVEDIR 271 (409)
Q Consensus 195 illVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~---~~~~~~~~~~~iv~iSA~~g~gi~~L~ 271 (409)
+++|+|+..........+...... .+.|+++|+||+|+.......... ..........+++++||+++.|+.+++
T Consensus 79 il~v~~~~~~~~~~~~~~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 79 ILFVVDADLRADEEEEKLLELLRE--RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHh--cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence 999999998775555442333333 689999999999998765544332 122223345689999999999999999
Q ss_pred HHHHhh
Q 015293 272 DWILTK 277 (409)
Q Consensus 272 ~~L~~~ 277 (409)
++|.+.
T Consensus 157 ~~l~~~ 162 (163)
T cd00880 157 EALIEA 162 (163)
T ss_pred HHHHhh
Confidence 999764
No 57
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.81 E-value=1.5e-18 Score=157.55 Aligned_cols=160 Identities=28% Similarity=0.343 Sum_probs=110.2
Q ss_pred EEecCCCChHHHHHHHhCCc-ceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh-hhHhHH---HHHHHHHhhc
Q 015293 116 VLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-HMLDSM---MMKNVRSAGI 190 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~-~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~-~~l~~~---~~~~~~~~~~ 190 (409)
++|.+|+|||||+|+|++.. ...+++.+++|+....... +.++.||||||+..... ...... +.........
T Consensus 29 ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (196)
T PRK00454 29 FAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRE 105 (196)
T ss_pred EEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCc
Confidence 99999999999999999975 5667788888877554332 37899999999632110 011111 1222223334
Q ss_pred CcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCC--CceEEEcccCCCCCHH
Q 015293 191 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD--VDEVIPVSAKYGHGVE 268 (409)
Q Consensus 191 ~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~--~~~iv~iSA~~g~gi~ 268 (409)
.++++++|+|++.+.......+...+.. .+.|+++++||+|+............+..... ..+++++||++|.|++
T Consensus 106 ~~~~~~~v~d~~~~~~~~~~~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~ 183 (196)
T PRK00454 106 NLKGVVLLIDSRHPLKELDLQMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGID 183 (196)
T ss_pred cceEEEEEEecCCCCCHHHHHHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHH
Confidence 5678999999887766555555555544 57899999999999875544332222221111 3478999999999999
Q ss_pred HHHHHHHhhCCC
Q 015293 269 DIRDWILTKLPL 280 (409)
Q Consensus 269 ~L~~~L~~~l~~ 280 (409)
+++++|.+.+.+
T Consensus 184 ~l~~~i~~~~~~ 195 (196)
T PRK00454 184 ELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHHhcC
Confidence 999999988764
No 58
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.81 E-value=9.2e-19 Score=153.83 Aligned_cols=152 Identities=22% Similarity=0.221 Sum_probs=101.4
Q ss_pred EEecCCCChHHHHHHHhCCccee-eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|++|+|||||+|++++.++.. ..+..+.+.......+...+..+.+||||| +..+..+ ....++.+|+
T Consensus 6 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G--~~~~~~~-------~~~~~~~~~~ 76 (163)
T cd01860 6 LLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAG--QERYRSL-------APMYYRGAAA 76 (163)
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCc--hHHHHHH-------HHHHhccCCE
Confidence 99999999999999999988653 233333333333333444456789999999 4333222 2345788999
Q ss_pred EEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChh--hHHHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 195 IVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 195 illVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~--~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
+++|+|++++. .....++...........|+++++||+|+.... ............ + .+++++||++|.|+.++
T Consensus 77 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 77 AIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADEN-G-LLFFETSAKTGENVNEL 154 (163)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHc-C-CEEEEEECCCCCCHHHH
Confidence 99999998654 222233333322222568999999999987322 222222222222 3 47999999999999999
Q ss_pred HHHHHhhC
Q 015293 271 RDWILTKL 278 (409)
Q Consensus 271 ~~~L~~~l 278 (409)
+++|.+.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99998875
No 59
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.81 E-value=5.9e-19 Score=159.35 Aligned_cols=152 Identities=20% Similarity=0.144 Sum_probs=103.0
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
..+ ++|.+|||||||+|++.+..+..+.+ |.......+..++.++.+|||||.. .... .+..++..
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~--~~~~-------~~~~~~~~ 84 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRLAQHQP----TQHPTSEELAIGNIKFTTFDLGGHQ--QARR-------LWKDYFPE 84 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCC----ccccceEEEEECCEEEEEEECCCCH--HHHH-------HHHHHhCC
Confidence 344 99999999999999999987653322 3333334455577899999999952 2222 23456789
Q ss_pred cceEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHHhc----------CCCceEEE
Q 015293 192 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF----------TDVDEVIP 258 (409)
Q Consensus 192 aDvillVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~----------~~~~~iv~ 258 (409)
+|++++|+|++++. .....++...+... ..++|+++|+||+|+.......++.+.+... .+...+++
T Consensus 85 ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~ 164 (184)
T smart00178 85 VNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFM 164 (184)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEE
Confidence 99999999998753 22233444433321 1578999999999986433333333333211 13456999
Q ss_pred cccCCCCCHHHHHHHHHhh
Q 015293 259 VSAKYGHGVEDIRDWILTK 277 (409)
Q Consensus 259 iSA~~g~gi~~L~~~L~~~ 277 (409)
+||++|.|++++++||.+.
T Consensus 165 ~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 165 CSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred eecccCCChHHHHHHHHhh
Confidence 9999999999999999764
No 60
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.81 E-value=5.4e-19 Score=161.60 Aligned_cols=161 Identities=19% Similarity=0.195 Sum_probs=101.1
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
|+|.+|||||||++++++..+... ..|.++.+.....+..++ ..+.+|||||+.... ......+......++..||
T Consensus 5 ivG~~~vGKTsLi~~~~~~~f~~~-~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~-~~~~~e~~~~~~~~~~~ad 82 (198)
T cd04142 5 VLGAPGVGKTAIVRQFLAQEFPEE-YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP-GTAGQEWMDPRFRGLRNSR 82 (198)
T ss_pred EECCCCCcHHHHHHHHHcCCCCcc-cCCccccccceeEEEECCEEEEEEEEeCCCcccCC-ccchhHHHHHHHhhhccCC
Confidence 899999999999999998876532 233333332222333344 578899999964311 1122222233445578999
Q ss_pred eEEEEeeCCCCCCh--HHHHHHHHhccC---CCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCceEEEcccCCCCC
Q 015293 194 CIVVLVDACKAPER--IDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGHG 266 (409)
Q Consensus 194 villVvD~~~~~~~--~~~~l~~~l~~~---~~~~p~ilvlNK~Dl~~~~~~--~~~~~~~~~~~~~~~iv~iSA~~g~g 266 (409)
++++|+|++++.+- ...++....... ..+.|+++|+||+|+...... .....+..+. ...+++++||++|.|
T Consensus 83 ~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~e~Sak~g~~ 161 (198)
T cd04142 83 AFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKS-WKCGYLECSAKYNWH 161 (198)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHh-cCCcEEEecCCCCCC
Confidence 99999999876422 222222222111 256899999999999643211 1111221222 235789999999999
Q ss_pred HHHHHHHHHhhCC
Q 015293 267 VEDIRDWILTKLP 279 (409)
Q Consensus 267 i~~L~~~L~~~l~ 279 (409)
+++|++.+...+.
T Consensus 162 v~~lf~~i~~~~~ 174 (198)
T cd04142 162 ILLLFKELLISAT 174 (198)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987654
No 61
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.81 E-value=6.8e-19 Score=154.70 Aligned_cols=152 Identities=22% Similarity=0.234 Sum_probs=101.2
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
++ ++|.+|+|||||++++++..+ ++..++++.+.....+..++ ..+.+|||||. ..+..+ ...++.
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~~ 72 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQ--EEFSAM-------REQYMR 72 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCC--cchhHH-------HHHHHh
Confidence 44 999999999999999998765 35555555544433333333 56889999994 333333 234467
Q ss_pred CcceEEEEeeCCCCC--ChHHHHHHHHhcc-CCCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCceEEEcccCCCC
Q 015293 191 NADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGH 265 (409)
Q Consensus 191 ~aDvillVvD~~~~~--~~~~~~l~~~l~~-~~~~~p~ilvlNK~Dl~~~~~~--~~~~~~~~~~~~~~~iv~iSA~~g~ 265 (409)
.+|++++|+|+++.. .....++....+. ...+.|+++|+||+|+.....+ ........ ..+ .+++++||++|.
T Consensus 73 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~-~~~-~~~~~~Sa~~~~ 150 (164)
T cd04145 73 TGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELAR-KLK-IPYIETSAKDRL 150 (164)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHH-HcC-CcEEEeeCCCCC
Confidence 899999999998754 2222333222221 1157899999999999754321 12222222 223 378999999999
Q ss_pred CHHHHHHHHHhhC
Q 015293 266 GVEDIRDWILTKL 278 (409)
Q Consensus 266 gi~~L~~~L~~~l 278 (409)
|+++++++|...+
T Consensus 151 ~i~~l~~~l~~~~ 163 (164)
T cd04145 151 NVDKAFHDLVRVI 163 (164)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999998754
No 62
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.81 E-value=7.9e-19 Score=157.72 Aligned_cols=148 Identities=25% Similarity=0.292 Sum_probs=101.6
Q ss_pred EEecCCCChHHHHHHHhCCc-ceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhh-hHhHHH---HHHHHHhhc
Q 015293 116 VLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH-MLDSMM---MKNVRSAGI 190 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~-~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~-~l~~~~---~~~~~~~~~ 190 (409)
++|++|+|||||+|+|++.. ...+++.+++|.+....... ..+.+|||||+...... .....+ .........
T Consensus 23 ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (179)
T TIGR03598 23 FAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN---DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRE 99 (179)
T ss_pred EEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC---CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhCh
Confidence 99999999999999999986 55677888888876544432 37999999997431110 011111 122222234
Q ss_pred CcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHH----HHHHHhcCCCceEEEcccCCCCC
Q 015293 191 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK----LEWYEKFTDVDEVIPVSAKYGHG 266 (409)
Q Consensus 191 ~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~----~~~~~~~~~~~~iv~iSA~~g~g 266 (409)
.+|++++|+|++++.......+...+.. .++|+++|+||+|+....+.... .+.+.......+++++||++|+|
T Consensus 100 ~~~~ii~vvd~~~~~~~~~~~~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~g 177 (179)
T TIGR03598 100 NLKGVVLLMDIRHPLKELDLEMLEWLRE--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTG 177 (179)
T ss_pred hhcEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCC
Confidence 5789999999998777766666666655 57899999999999865443322 23333322224799999999999
Q ss_pred HH
Q 015293 267 VE 268 (409)
Q Consensus 267 i~ 268 (409)
++
T Consensus 178 i~ 179 (179)
T TIGR03598 178 ID 179 (179)
T ss_pred CC
Confidence 74
No 63
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.81 E-value=4.5e-19 Score=156.13 Aligned_cols=151 Identities=20% Similarity=0.203 Sum_probs=98.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~--~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|++.+..+. ....+|+.+.....+. .....+.+|||||. ..+..+. ...+..+|
T Consensus 5 v~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~--~~~~~~~-------~~~~~~~~ 73 (164)
T smart00173 5 VLGSGGVGKSALTIQFVQGHFV--DDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQ--EEFSAMR-------DQYMRTGE 73 (164)
T ss_pred EECCCCCCHHHHHHHHHhCcCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCc--ccchHHH-------HHHHhhCC
Confidence 8999999999999999987764 3333444433332223 23457889999994 3333332 23467899
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccC-CCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
++++|+|+++... ....+.....+.. ..+.|+++|+||+|+..... .......... .+ .+++++||++|.|++
T Consensus 74 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~~i~ 151 (164)
T smart00173 74 GFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQ-WG-CPFLETSAKERVNVD 151 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHH-cC-CEEEEeecCCCCCHH
Confidence 9999999987532 2222222222111 14689999999999975322 1122222222 23 479999999999999
Q ss_pred HHHHHHHhhCC
Q 015293 269 DIRDWILTKLP 279 (409)
Q Consensus 269 ~L~~~L~~~l~ 279 (409)
+++++|.+.+.
T Consensus 152 ~l~~~l~~~~~ 162 (164)
T smart00173 152 EAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHHh
Confidence 99999987654
No 64
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.81 E-value=3.8e-19 Score=163.82 Aligned_cols=154 Identities=25% Similarity=0.247 Sum_probs=106.1
Q ss_pred EEecCCCChHHHHHHHhCCcceeee------------------------------cCCCceEEEEEEEEeCCCeeEEEEe
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVT------------------------------NKPQTTRHRILGICSGPEYQMILYD 165 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~------------------------------~~~~tt~~~~~~~~~~~~~~i~liD 165 (409)
++|++|+|||||+++|++....+.+ ...++|++.....+.+++.++.|+|
T Consensus 4 iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~liD 83 (208)
T cd04166 4 TCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFIIAD 83 (208)
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEEEEE
Confidence 8999999999999999865443331 1267788888888888999999999
Q ss_pred CCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCC-CCEEEEEecCCCCChhh--HHH
Q 015293 166 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLIKPGE--IAK 242 (409)
Q Consensus 166 tpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~-~p~ilvlNK~Dl~~~~~--~~~ 242 (409)
|||+. . +...+..++..+|++++|+|++.+...........+.. .+ .++|+|+||+|+..... ...
T Consensus 84 TpG~~--~-------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~--~~~~~iIvviNK~D~~~~~~~~~~~ 152 (208)
T cd04166 84 TPGHE--Q-------YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL--LGIRHVVVAVNKMDLVDYSEEVFEE 152 (208)
T ss_pred CCcHH--H-------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH--cCCCcEEEEEEchhcccCCHHHHHH
Confidence 99952 2 22334456789999999999998876555444444433 33 45788999999974221 111
Q ss_pred HH----HHHHhcC-CCceEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCC
Q 015293 243 KL----EWYEKFT-DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPK 287 (409)
Q Consensus 243 ~~----~~~~~~~-~~~~iv~iSA~~g~gi~~L~~~L~~~l~~~~~~~~~ 287 (409)
.. ....... ...+++++||++|.|+.+. .+..+|++++
T Consensus 153 i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~-------~~~~~w~~g~ 195 (208)
T cd04166 153 IVADYLAFAAKLGIEDITFIPISALDGDNVVSR-------SENMPWYSGP 195 (208)
T ss_pred HHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC-------CCCCCCCCCC
Confidence 11 1222221 2246899999999999853 3456787764
No 65
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.81 E-value=1.5e-18 Score=158.09 Aligned_cols=141 Identities=19% Similarity=0.185 Sum_probs=102.9
Q ss_pred EEecCCCChHHHHHHHhCCc------cee---------eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHH
Q 015293 116 VLGKPNVGKSTLANQMIGQK------LSI---------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSM 180 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~------~~~---------v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~ 180 (409)
++|++|+|||||+++|++.. ... .....++|.+.....++.++.++.|+||||+..
T Consensus 7 iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~--------- 77 (195)
T cd01884 7 TIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD--------- 77 (195)
T ss_pred EECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH---------
Confidence 99999999999999998641 000 112467777777777778889999999999532
Q ss_pred HHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCC-EEEEEecCCCCChhhHHH-----HHHHHHhcC---
Q 015293 181 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAK-----KLEWYEKFT--- 251 (409)
Q Consensus 181 ~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilvlNK~Dl~~~~~~~~-----~~~~~~~~~--- 251 (409)
+...+..++..+|++++|+|+..+...++..++..+.. .++| +|+|+||+|+....+..+ ....+....
T Consensus 78 ~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 78 YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQ--VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 45666777889999999999998888877777777665 5676 779999999974333221 222222211
Q ss_pred CCceEEEcccCCCCCH
Q 015293 252 DVDEVIPVSAKYGHGV 267 (409)
Q Consensus 252 ~~~~iv~iSA~~g~gi 267 (409)
...+++++||++|.|+
T Consensus 156 ~~v~iipiSa~~g~n~ 171 (195)
T cd01884 156 DNTPIVRGSALKALEG 171 (195)
T ss_pred cCCeEEEeeCccccCC
Confidence 2368999999999984
No 66
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.81 E-value=9.2e-19 Score=153.53 Aligned_cols=148 Identities=20% Similarity=0.245 Sum_probs=97.4
Q ss_pred EEecCCCChHHHHHHHhCCcc--eeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKL--SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~--~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+++|.+... ....++.+.+.. .+..++..+.+|||||. ..+..+ +..++..+|
T Consensus 4 ~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~----~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~~~~~d 70 (162)
T cd04157 4 VVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE----SFEKGNLSFTAFDMSGQ--GKYRGL-------WEHYYKNIQ 70 (162)
T ss_pred EECCCCCCHHHHHHHHcccCCCcceecCccccceE----EEEECCEEEEEEECCCC--HhhHHH-------HHHHHccCC
Confidence 899999999999999998743 223344443322 23456788999999994 333222 334578999
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhcc--C-CCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCceEEEcccCCCC
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGD--H-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGH 265 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~--~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~---~~~~~~iv~iSA~~g~ 265 (409)
++++|+|++++.. ....++...+.. . ..+.|+++|+||+|+............+.. .....+++++||++|.
T Consensus 71 ~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~ 150 (162)
T cd04157 71 GIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGE 150 (162)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCC
Confidence 9999999987642 122333333221 1 147999999999999754322222222111 1112358999999999
Q ss_pred CHHHHHHHHHh
Q 015293 266 GVEDIRDWILT 276 (409)
Q Consensus 266 gi~~L~~~L~~ 276 (409)
|+++++++|.+
T Consensus 151 gv~~~~~~l~~ 161 (162)
T cd04157 151 GLDEGVQWLQA 161 (162)
T ss_pred chHHHHHHHhc
Confidence 99999999864
No 67
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.81 E-value=8.4e-19 Score=175.63 Aligned_cols=186 Identities=24% Similarity=0.320 Sum_probs=135.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeC------------------------CCeeEEEEeCCCCch
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG------------------------PEYQMILYDTPGIIE 171 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~------------------------~~~~i~liDtpG~~~ 171 (409)
|+|.||||||||+|+|++.... ++++|++|.++..+.... ...++.++||||+..
T Consensus 6 ivG~pnvGKSTlfn~Lt~~~~~-~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl~~ 84 (396)
T PRK09602 6 LVGKPNVGKSTFFNAATLADVE-IANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAGLVP 84 (396)
T ss_pred EECCCCCCHHHHHHHHhCCccc-ccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCCcCC
Confidence 9999999999999999998764 689999999888876431 125688999999865
Q ss_pred hhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCC------------ChHH------H-----------------------
Q 015293 172 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP------------ERID------E----------------------- 210 (409)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~------------~~~~------~----------------------- 210 (409)
.... ...+.......++.||++++|+|+.... .+.. .
T Consensus 85 ga~~--g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~~ 162 (396)
T PRK09602 85 GAHE--GRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQA 162 (396)
T ss_pred Cccc--hhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 3211 1123345566688999999999997211 0000 0
Q ss_pred -----------H----------HHHHhcc----------------------CCCCCCEEEEEecCCCCChhh-HHHHHHH
Q 015293 211 -----------I----------LEEGVGD----------------------HKDKLPILLVLNKKDLIKPGE-IAKKLEW 246 (409)
Q Consensus 211 -----------~----------l~~~l~~----------------------~~~~~p~ilvlNK~Dl~~~~~-~~~~~~~ 246 (409)
. +...+.. +...+|+|+|+||+|+..... +..+.+
T Consensus 163 ~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~l~~i~~- 241 (396)
T PRK09602 163 EKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEENIERLKE- 241 (396)
T ss_pred CCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHHHHHHHh-
Confidence 0 0011110 113589999999999864322 222222
Q ss_pred HHhcCCCceEEEcccCCCCCHHH-HHHHHHhhCCCCCCCCCCccccCchHHHHHHHHHHHHHHhhcC
Q 015293 247 YEKFTDVDEVIPVSAKYGHGVED-IRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYR 312 (409)
Q Consensus 247 ~~~~~~~~~iv~iSA~~g~gi~~-L~~~L~~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~~~ 312 (409)
. ++..++++||+.+.++.+ |++.+.+++|.+|++||.+.+++++.+ ++|++| ++|..+.
T Consensus 242 ---~-~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r--~~E~IR-k~l~~~g 301 (396)
T PRK09602 242 ---E-KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKK--ALEYIR-EVLKKYG 301 (396)
T ss_pred ---c-CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHH--HHHHHH-HHHHHhC
Confidence 2 456799999999999999 899999999999999999999999988 889999 8877765
No 68
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.81 E-value=7.5e-19 Score=155.39 Aligned_cols=152 Identities=13% Similarity=0.159 Sum_probs=97.3
Q ss_pred EEecCCCChHHHHHHHhCCcceee-ecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v-~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|.+|||||||++++.+.++... .++.+.+..............+.+|||||. ..+..+ ....++.+|+
T Consensus 6 i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~--~~~~~~-------~~~~~~~~~~ 76 (165)
T cd01865 6 IIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQ--ERYRTI-------TTAYYRGAMG 76 (165)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCh--HHHHHH-------HHHHccCCcE
Confidence 999999999999999999886421 111111111111122223467999999994 333322 3455789999
Q ss_pred EEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 195 IVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 195 illVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
+++|+|+++.. .....++...........|+++|+||+|+..... ...... +....+. +++++||++|.|+++|
T Consensus 77 ~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~-~~~~~~~-~~~~~Sa~~~~gv~~l 154 (165)
T cd01865 77 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQ-LADQLGF-EFFEASAKENINVKQV 154 (165)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHH-HHHHcCC-EEEEEECCCCCCHHHH
Confidence 99999998653 2222333222221124689999999999965432 122222 2222233 7999999999999999
Q ss_pred HHHHHhhC
Q 015293 271 RDWILTKL 278 (409)
Q Consensus 271 ~~~L~~~l 278 (409)
+++|.+.+
T Consensus 155 ~~~l~~~~ 162 (165)
T cd01865 155 FERLVDII 162 (165)
T ss_pred HHHHHHHH
Confidence 99998765
No 69
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.81 E-value=8.4e-19 Score=155.39 Aligned_cols=154 Identities=16% Similarity=0.138 Sum_probs=98.4
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceee-ecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v-~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
++ ++|.+|||||||++++.+.++... .+..+.+.......+......+.+|||||. ..+..+ ....++.
T Consensus 5 ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~--~~~~~~-------~~~~~~~ 75 (167)
T cd01867 5 KLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ--ERFRTI-------TTAYYRG 75 (167)
T ss_pred EEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCch--HHHHHH-------HHHHhCC
Confidence 44 999999999999999998876421 122222221112122223357899999994 333322 2345789
Q ss_pred cceEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCH
Q 015293 192 ADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 192 aDvillVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi 267 (409)
||++++|+|++++.. ....++....+....+.|+++|+||+|+..... .......... .+ .+++++||++|.|+
T Consensus 76 ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~~v 153 (167)
T cd01867 76 AMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADE-YG-IKFLETSAKANINV 153 (167)
T ss_pred CCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHH-cC-CEEEEEeCCCCCCH
Confidence 999999999987542 222333322222125789999999999974322 1222222222 22 37899999999999
Q ss_pred HHHHHHHHhhC
Q 015293 268 EDIRDWILTKL 278 (409)
Q Consensus 268 ~~L~~~L~~~l 278 (409)
++++++|.+.+
T Consensus 154 ~~~~~~i~~~~ 164 (167)
T cd01867 154 EEAFFTLAKDI 164 (167)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 70
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.81 E-value=9.1e-19 Score=156.87 Aligned_cols=151 Identities=20% Similarity=0.175 Sum_probs=100.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||++++....+. ..+.+|..+.....+..++ ..+.+|||||. +.+..+. ..++..+|
T Consensus 6 vvG~~~vGKTsl~~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~-------~~~~~~a~ 74 (175)
T cd01874 6 VVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ--EDYDRLR-------PLSYPQTD 74 (175)
T ss_pred EECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEECCCc--cchhhhh-------hhhcccCC
Confidence 9999999999999999987763 3444454443332233344 67889999994 4433332 23578999
Q ss_pred eEEEEeeCCCCCCh--HHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHH-------------HHHHHHhcCCCceEEE
Q 015293 194 CIVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTDVDEVIP 258 (409)
Q Consensus 194 villVvD~~~~~~~--~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~-------------~~~~~~~~~~~~~iv~ 258 (409)
++++|+|+++...- ....+...+.....+.|+++|+||+|+........ ....+....+...+++
T Consensus 75 ~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e 154 (175)
T cd01874 75 VFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVE 154 (175)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEE
Confidence 99999999876422 22223333333235789999999999865322111 1111222233457999
Q ss_pred cccCCCCCHHHHHHHHHhh
Q 015293 259 VSAKYGHGVEDIRDWILTK 277 (409)
Q Consensus 259 iSA~~g~gi~~L~~~L~~~ 277 (409)
+||++|.|++++++.+...
T Consensus 155 ~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 155 CSALTQKGLKNVFDEAILA 173 (175)
T ss_pred ecCCCCCCHHHHHHHHHHH
Confidence 9999999999999998764
No 71
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.80 E-value=7.9e-19 Score=155.79 Aligned_cols=154 Identities=20% Similarity=0.224 Sum_probs=100.1
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeec-CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~-~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
++ ++|.+|||||||++++++..+....+ ..+.+..............+.+|||||. +.+.. ....+++.
T Consensus 6 ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~-------~~~~~~~~ 76 (168)
T cd01866 6 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ--ESFRS-------ITRSYYRG 76 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc--HHHHH-------HHHHHhcc
Confidence 44 99999999999999999887653322 2233332222223333467899999993 33222 23455789
Q ss_pred cceEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCH
Q 015293 192 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 192 aDvillVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi 267 (409)
+|++++|+|++++. .....++.+..+...++.|+++|+||+|+..... .......... .+ .+++++||++|.|+
T Consensus 77 ~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~e~Sa~~~~~i 154 (168)
T cd01866 77 AAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKE-HG-LIFMETSAKTASNV 154 (168)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHH-cC-CEEEEEeCCCCCCH
Confidence 99999999998643 2222333332222125789999999999974322 1222222222 22 47899999999999
Q ss_pred HHHHHHHHhhC
Q 015293 268 EDIRDWILTKL 278 (409)
Q Consensus 268 ~~L~~~L~~~l 278 (409)
++++.++.+.+
T Consensus 155 ~~~~~~~~~~~ 165 (168)
T cd01866 155 EEAFINTAKEI 165 (168)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 72
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.80 E-value=1.6e-18 Score=151.89 Aligned_cols=149 Identities=20% Similarity=0.224 Sum_probs=97.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|.+|||||||++++.+..+....++.+.+. ..+.......+.+|||||.. ... ..+...+..+|++
T Consensus 4 i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~l~i~D~~G~~--~~~-------~~~~~~~~~~~~i 71 (160)
T cd04156 4 LLGLDSAGKSTLLYKLKHAELVTTIPTVGFNV---EMLQLEKHLSLTVWDVGGQE--KMR-------TVWKCYLENTDGL 71 (160)
T ss_pred EEcCCCCCHHHHHHHHhcCCcccccCccCcce---EEEEeCCceEEEEEECCCCH--hHH-------HHHHHHhccCCEE
Confidence 89999999999999999987653333333221 11212345789999999952 222 2233457889999
Q ss_pred EEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHH--hcC--CCceEEEcccCCCCCHH
Q 015293 196 VVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE--KFT--DVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 196 llVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~--~~~--~~~~iv~iSA~~g~gi~ 268 (409)
++|+|++++. .....++...++.. ..+.|+++|+||+|+.......+....+. ... ...+++++||++|+|++
T Consensus 72 v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 151 (160)
T cd04156 72 VYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLA 151 (160)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChH
Confidence 9999998764 33333444444321 14789999999999864322222222211 111 12368999999999999
Q ss_pred HHHHHHHh
Q 015293 269 DIRDWILT 276 (409)
Q Consensus 269 ~L~~~L~~ 276 (409)
+++++|.+
T Consensus 152 ~~~~~i~~ 159 (160)
T cd04156 152 EAFRKLAS 159 (160)
T ss_pred HHHHHHhc
Confidence 99999864
No 73
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=1.1e-18 Score=165.25 Aligned_cols=162 Identities=24% Similarity=0.315 Sum_probs=124.2
Q ss_pred eEEEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 114 KSVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 114 ~~ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
-+|.|+||||||||++++++.+.. +.++|.||+....+++..+..++.++||||+.+.+...++..-.+.+...-..++
T Consensus 171 ivVaG~PNVGKSSlv~~lT~AkpE-vA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~ 249 (346)
T COG1084 171 IVVAGYPNVGKSSLVRKLTTAKPE-VAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAG 249 (346)
T ss_pred EEEecCCCCcHHHHHHHHhcCCCc-cCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcC
Confidence 339999999999999999999976 7999999999999999999999999999999987665555544444544455789
Q ss_pred eEEEEeeCCCCC----ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~----~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
+|||++|.+... +.+.. +++.++.. -+.|+++|+||+|......+.+....+..... .....+|+..+.+++.
T Consensus 250 ~IlF~~D~Se~cgy~lE~Q~~-L~~eIk~~-f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~ 326 (346)
T COG1084 250 VILFLFDPSETCGYSLEEQIS-LLEEIKEL-FKAPIVVVINKIDIADEEKLEEIEASVLEEGG-EEPLKISATKGCGLDK 326 (346)
T ss_pred eEEEEEcCccccCCCHHHHHH-HHHHHHHh-cCCCeEEEEecccccchhHHHHHHHHHHhhcc-ccccceeeeehhhHHH
Confidence 999999998765 33333 33333332 34899999999999877766665544443332 2356789999999999
Q ss_pred HHHHHHhhCC
Q 015293 270 IRDWILTKLP 279 (409)
Q Consensus 270 L~~~L~~~l~ 279 (409)
+...+.....
T Consensus 327 ~~~~v~~~a~ 336 (346)
T COG1084 327 LREEVRKTAL 336 (346)
T ss_pred HHHHHHHHhh
Confidence 9988877644
No 74
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.80 E-value=1.2e-18 Score=153.84 Aligned_cols=151 Identities=19% Similarity=0.197 Sum_probs=98.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||++++.+.++.. ...+..+.+.....+..+ ..++.+|||||. ..+..+ ....++.+|
T Consensus 7 i~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~--~~~~~~-------~~~~~~~~~ 76 (166)
T cd01869 7 LIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ--ERFRTI-------TSSYYRGAH 76 (166)
T ss_pred EECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCc--HhHHHH-------HHHHhCcCC
Confidence 99999999999999999887643 223333333332333333 357899999994 333222 334578999
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~--~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
++++|+|+++.. .....++....+....+.|+++|+||+|+.....+ ..... +....+ .+++++||++|.|+++
T Consensus 77 ~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~-~~~~~~-~~~~~~Sa~~~~~v~~ 154 (166)
T cd01869 77 GIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQE-FADELG-IPFLETSAKNATNVEQ 154 (166)
T ss_pred EEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHH-HHHHcC-CeEEEEECCCCcCHHH
Confidence 999999998754 22223333222211146899999999998654322 22222 222223 4799999999999999
Q ss_pred HHHHHHhhC
Q 015293 270 IRDWILTKL 278 (409)
Q Consensus 270 L~~~L~~~l 278 (409)
++..|.+.+
T Consensus 155 ~~~~i~~~~ 163 (166)
T cd01869 155 AFMTMAREI 163 (166)
T ss_pred HHHHHHHHH
Confidence 999998755
No 75
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.80 E-value=2.2e-18 Score=151.82 Aligned_cols=148 Identities=18% Similarity=0.207 Sum_probs=96.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|.+|||||||++++....+.. ..| |+.... ..+.....++.+|||||. ..+. ..+..+++.||++
T Consensus 5 ~~G~~~~GKTsli~~l~~~~~~~--~~p-t~g~~~-~~~~~~~~~~~l~D~~G~--~~~~-------~~~~~~~~~ad~~ 71 (159)
T cd04150 5 MVGLDAAGKTTILYKLKLGEIVT--TIP-TIGFNV-ETVEYKNISFTVWDVGGQ--DKIR-------PLWRHYFQNTQGL 71 (159)
T ss_pred EECCCCCCHHHHHHHHhcCCCcc--cCC-CCCcce-EEEEECCEEEEEEECCCC--HhHH-------HHHHHHhcCCCEE
Confidence 89999999999999997655532 222 222111 234456788999999994 3322 2234568999999
Q ss_pred EEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCceEEEcccCCCCCHHH
Q 015293 196 VVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 196 llVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~---~~~~~~iv~iSA~~g~gi~~ 269 (409)
++|+|+++.. .....++...+... ....|++||+||+|+.......+....+.. ......++++||++|.|+++
T Consensus 72 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~ 151 (159)
T cd04150 72 IFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYE 151 (159)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHH
Confidence 9999998753 23333444443321 145899999999999643222222222211 11223578999999999999
Q ss_pred HHHHHHh
Q 015293 270 IRDWILT 276 (409)
Q Consensus 270 L~~~L~~ 276 (409)
++++|.+
T Consensus 152 ~~~~l~~ 158 (159)
T cd04150 152 GLDWLSN 158 (159)
T ss_pred HHHHHhc
Confidence 9999864
No 76
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.80 E-value=1.2e-18 Score=153.57 Aligned_cols=151 Identities=22% Similarity=0.247 Sum_probs=98.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||++++.+.++... ..+..+.+.....+..++ ..+.+|||||. ..+..+ ....+..++
T Consensus 8 vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~~~-------~~~~~~~~~ 77 (165)
T cd01868 8 LIGDSGVGKSNLLSRFTRNEFNLD-SKSTIGVEFATRSIQIDGKTIKAQIWDTAGQ--ERYRAI-------TSAYYRGAV 77 (165)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCC-CCCccceEEEEEEEEECCEEEEEEEEeCCCh--HHHHHH-------HHHHHCCCC
Confidence 999999999999999998876532 233333333333333333 57899999994 333322 234468899
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
++++|+|+++.. .....++.........+.|+++|+||+|+..... .......... .+ .+++++||++|.|+++
T Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~~v~~ 155 (165)
T cd01868 78 GALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEK-NG-LSFIETSALDGTNVEE 155 (165)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHH-cC-CEEEEEECCCCCCHHH
Confidence 999999998644 2222333332222224589999999999864322 1122222222 22 4799999999999999
Q ss_pred HHHHHHhhC
Q 015293 270 IRDWILTKL 278 (409)
Q Consensus 270 L~~~L~~~l 278 (409)
++++|.+.+
T Consensus 156 l~~~l~~~i 164 (165)
T cd01868 156 AFKQLLTEI 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998754
No 77
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.80 E-value=1.2e-18 Score=153.98 Aligned_cols=150 Identities=21% Similarity=0.242 Sum_probs=95.0
Q ss_pred EEecCCCChHHHHHHHhCCcceee-ecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v-~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|.+|||||||++++++..+... .++.+.+. ............+.+|||||. ..+..+ ...++..+|+
T Consensus 6 ~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~~~~~~ 75 (165)
T cd04140 6 VFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGS--HQFPAM-------QRLSISKGHA 75 (165)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCC--CcchHH-------HHHHhhcCCE
Confidence 999999999999999998875321 11111111 111223334467899999995 333322 2234678999
Q ss_pred EEEEeeCCCCCCh--HHHHHHHHhcc----CCCCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCceEEEcccCCCCCH
Q 015293 195 IVVLVDACKAPER--IDEILEEGVGD----HKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 195 illVvD~~~~~~~--~~~~l~~~l~~----~~~~~p~ilvlNK~Dl~~~~~~~~-~~~~~~~~~~~~~iv~iSA~~g~gi 267 (409)
+++|+|+++.... ...+ ...++. ...+.|+++|+||+|+.....+.. ....+....+ .+++++||++|.|+
T Consensus 76 ~ilv~d~~~~~s~~~~~~~-~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~SA~~g~~v 153 (165)
T cd04140 76 FILVYSVTSKQSLEELKPI-YELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWN-CAFMETSAKTNHNV 153 (165)
T ss_pred EEEEEECCCHHHHHHHHHH-HHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhC-CcEEEeecCCCCCH
Confidence 9999999876522 2222 222221 115689999999999965332211 1111222222 37899999999999
Q ss_pred HHHHHHHHhh
Q 015293 268 EDIRDWILTK 277 (409)
Q Consensus 268 ~~L~~~L~~~ 277 (409)
++++++|.++
T Consensus 154 ~~~f~~l~~~ 163 (165)
T cd04140 154 QELFQELLNL 163 (165)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 78
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.80 E-value=2e-18 Score=154.26 Aligned_cols=151 Identities=19% Similarity=0.225 Sum_probs=100.6
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
..+ ++|++|+|||||+++|.+..+....++.+.+ ...+..++..+.+|||||. ..+. ..+..++..
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~l~D~~G~--~~~~-------~~~~~~~~~ 82 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSN----VEEIVYKNIRFLMWDIGGQ--ESLR-------SSWNTYYTN 82 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc----eEEEEECCeEEEEEECCCC--HHHH-------HHHHHHhhc
Confidence 345 9999999999999999877664333333322 2234456789999999994 2222 223455789
Q ss_pred cceEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCceEEEcccCCCC
Q 015293 192 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGH 265 (409)
Q Consensus 192 aDvillVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~---~~~~~~iv~iSA~~g~ 265 (409)
+|++++|+|++++. .....++...+... ..+.|+++++||+|+.......+....+.. .....+++++||++|.
T Consensus 83 ~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~ 162 (174)
T cd04153 83 TDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGE 162 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCC
Confidence 99999999998753 22233444444321 146899999999998653222222222211 0112368999999999
Q ss_pred CHHHHHHHHHh
Q 015293 266 GVEDIRDWILT 276 (409)
Q Consensus 266 gi~~L~~~L~~ 276 (409)
|+++++++|.+
T Consensus 163 gi~e~~~~l~~ 173 (174)
T cd04153 163 GLPEGLDWIAS 173 (174)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 79
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.80 E-value=2.1e-18 Score=151.33 Aligned_cols=150 Identities=19% Similarity=0.237 Sum_probs=98.7
Q ss_pred EEecCCCChHHHHHHHhCCccee-eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|.+|+|||||+|+|++..+.. ..+..+.+.......+......+.+|||||. ..+..+ ....++.+|+
T Consensus 5 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~~~-------~~~~~~~~d~ 75 (161)
T cd01863 5 LIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQ--ERFRTL-------TSSYYRGAQG 75 (161)
T ss_pred EECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCc--hhhhhh-------hHHHhCCCCE
Confidence 89999999999999999887643 3334444433333333334467999999994 332222 2344689999
Q ss_pred EEEEeeCCCCCC--hHHHHHHHHhccC--CCCCCEEEEEecCCCCChh-hHHHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 195 IVVLVDACKAPE--RIDEILEEGVGDH--KDKLPILLVLNKKDLIKPG-EIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 195 illVvD~~~~~~--~~~~~l~~~l~~~--~~~~p~ilvlNK~Dl~~~~-~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
+++|+|++++.. ....++ +.+... ..+.|+++|+||+|+.... .......... ..+ .+++++||++|.|+++
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~-~~~-~~~~~~Sa~~~~gi~~ 152 (161)
T cd01863 76 VILVYDVTRRDTFTNLETWL-NELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR-KHN-MLFIETSAKTRDGVQQ 152 (161)
T ss_pred EEEEEECCCHHHHHhHHHHH-HHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH-HcC-CEEEEEecCCCCCHHH
Confidence 999999986542 222222 222211 2578999999999997322 2222222222 223 4799999999999999
Q ss_pred HHHHHHhh
Q 015293 270 IRDWILTK 277 (409)
Q Consensus 270 L~~~L~~~ 277 (409)
+++.+.+.
T Consensus 153 ~~~~~~~~ 160 (161)
T cd01863 153 AFEELVEK 160 (161)
T ss_pred HHHHHHHh
Confidence 99998765
No 80
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.80 E-value=2.1e-18 Score=151.79 Aligned_cols=151 Identities=17% Similarity=0.236 Sum_probs=97.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEE--EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~--~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|++++..+.. ...+..+.+.... ........+.+|||||. ..+..+ ....+..+|
T Consensus 5 ~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~~~~d 74 (168)
T cd04119 5 SMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGH--PEYLEV-------RNEFYKDTQ 74 (168)
T ss_pred EECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCeEEEEEEEECCcc--HHHHHH-------HHHHhccCC
Confidence 89999999999999999987642 2222222222222 22334578899999994 332222 334478999
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhccCC-----CCCCEEEEEecCCCCChh--hHHHHHHHHHhcCCCceEEEcccCCC
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVGDHK-----DKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYG 264 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~~~~-----~~~p~ilvlNK~Dl~~~~--~~~~~~~~~~~~~~~~~iv~iSA~~g 264 (409)
++++|+|++++. .....++....+... .+.|+++|+||+|+.... .......+... .+ .+++++||++|
T Consensus 75 ~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~ 152 (168)
T cd04119 75 GVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAES-KG-FKYFETSACTG 152 (168)
T ss_pred EEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHH-cC-CeEEEEECCCC
Confidence 999999998754 222333333322211 468999999999997322 12222222222 23 47899999999
Q ss_pred CCHHHHHHHHHhhC
Q 015293 265 HGVEDIRDWILTKL 278 (409)
Q Consensus 265 ~gi~~L~~~L~~~l 278 (409)
.|+++++++|.+.+
T Consensus 153 ~gi~~l~~~l~~~l 166 (168)
T cd04119 153 EGVNEMFQTLFSSI 166 (168)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998754
No 81
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.80 E-value=1.8e-18 Score=151.75 Aligned_cols=148 Identities=20% Similarity=0.220 Sum_probs=97.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|++|+|||||+++|....+....++.+.+ ...+...+..+.+|||||.. .+. ..+..++..+|++
T Consensus 4 lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~Dt~G~~--~~~-------~~~~~~~~~~~~i 70 (158)
T cd04151 4 ILGLDNAGKTTILYRLQLGEVVTTIPTIGFN----VETVTYKNLKFQVWDLGGQT--SIR-------PYWRCYYSNTDAI 70 (158)
T ss_pred EECCCCCCHHHHHHHHccCCCcCcCCccCcC----eEEEEECCEEEEEEECCCCH--HHH-------HHHHHHhcCCCEE
Confidence 8999999999999999776653221111111 12344567889999999952 222 2234557899999
Q ss_pred EEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHHhc---CCCceEEEcccCCCCCHHH
Q 015293 196 VVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 196 llVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~---~~~~~iv~iSA~~g~gi~~ 269 (409)
++|+|+++.. .....++...++.. ..++|+++|+||+|+............+... ....+++++||++|.|+++
T Consensus 71 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 150 (158)
T cd04151 71 IYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDE 150 (158)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHH
Confidence 9999998753 12233444333321 1468999999999997543222222222110 1123699999999999999
Q ss_pred HHHHHHh
Q 015293 270 IRDWILT 276 (409)
Q Consensus 270 L~~~L~~ 276 (409)
++++|.+
T Consensus 151 l~~~l~~ 157 (158)
T cd04151 151 GMDWLVN 157 (158)
T ss_pred HHHHHhc
Confidence 9999864
No 82
>PLN03118 Rab family protein; Provisional
Probab=99.80 E-value=9.8e-19 Score=161.31 Aligned_cols=161 Identities=19% Similarity=0.207 Sum_probs=104.4
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++ ++|.+|||||||+++|++..+....++.+.+.......+......+.||||||. ..+..+ ...+++.+
T Consensus 16 kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~~~~~~ 86 (211)
T PLN03118 16 KILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQ--ERFRTL-------TSSYYRNA 86 (211)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHHHHhcC
Confidence 44 999999999999999998876544444333332222223333467899999994 333333 23457899
Q ss_pred ceEEEEeeCCCCCCh--HHHHHHHHhccC--CCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCceEEEcccCCCCC
Q 015293 193 DCIVVLVDACKAPER--IDEILEEGVGDH--KDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGHG 266 (409)
Q Consensus 193 DvillVvD~~~~~~~--~~~~l~~~l~~~--~~~~p~ilvlNK~Dl~~~~~~--~~~~~~~~~~~~~~~iv~iSA~~g~g 266 (409)
|++|+|+|+++.... ....+...+... ..+.|+++|+||+|+.....+ ......... .+ .+++++||++|.|
T Consensus 87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~-~~-~~~~e~SAk~~~~ 164 (211)
T PLN03118 87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKE-HG-CLFLECSAKTREN 164 (211)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH-cC-CEEEEEeCCCCCC
Confidence 999999999875422 112222222211 146799999999998643322 112222222 22 3789999999999
Q ss_pred HHHHHHHHHhhCCCCCCCC
Q 015293 267 VEDIRDWILTKLPLGPAYY 285 (409)
Q Consensus 267 i~~L~~~L~~~l~~~~~~~ 285 (409)
+++++++|...+...+..+
T Consensus 165 v~~l~~~l~~~~~~~~~~~ 183 (211)
T PLN03118 165 VEQCFEELALKIMEVPSLL 183 (211)
T ss_pred HHHHHHHHHHHHHhhhhhh
Confidence 9999999998886654433
No 83
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.80 E-value=1.2e-18 Score=153.68 Aligned_cols=151 Identities=19% Similarity=0.210 Sum_probs=99.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+++++...+ +...++|+.+.....+..+ ...+.+|||||. ..+..+.. .+++.+|
T Consensus 6 ~~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~~-------~~~~~~d 74 (164)
T cd04175 6 VLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT--EQFTAMRD-------LYMKNGQ 74 (164)
T ss_pred EECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEECCCc--ccchhHHH-------HHHhhCC
Confidence 999999999999999986654 2444555554433334444 356779999994 34444433 3477899
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhcc-CCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~~-~~~~~p~ilvlNK~Dl~~~~~~~-~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
++++|+|.++.. +....++...... ...+.|+++|+||+|+....... .....+....+ .+++++||++|.|+++
T Consensus 75 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~ 153 (164)
T cd04175 75 GFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWG-CAFLETSAKAKINVNE 153 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhC-CEEEEeeCCCCCCHHH
Confidence 999999987654 2223333333321 12578999999999996432211 11122222222 4799999999999999
Q ss_pred HHHHHHhhC
Q 015293 270 IRDWILTKL 278 (409)
Q Consensus 270 L~~~L~~~l 278 (409)
++.+|.+.+
T Consensus 154 ~~~~l~~~l 162 (164)
T cd04175 154 IFYDLVRQI 162 (164)
T ss_pred HHHHHHHHh
Confidence 999998755
No 84
>COG2262 HflX GTPases [General function prediction only]
Probab=99.79 E-value=1.1e-18 Score=170.01 Aligned_cols=159 Identities=30% Similarity=0.349 Sum_probs=120.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC-CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~-~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|++|+|||||+|+|++.... +.+..++|-++....+... +.++++-||.|+++.-.+.|-..| +.+......||+
T Consensus 197 LvGYTNAGKSTL~N~LT~~~~~-~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AF-ksTLEE~~~aDl 274 (411)
T COG2262 197 LVGYTNAGKSTLFNALTGADVY-VADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAF-KSTLEEVKEADL 274 (411)
T ss_pred EEeeccccHHHHHHHHhccCee-ccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHH-HHHHHHhhcCCE
Confidence 9999999999999999988765 6788888888887777765 689999999999986666666665 445566789999
Q ss_pred EEEEeeCCCCC-ChHHHHHHHHhccCC-CCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHH
Q 015293 195 IVVLVDACKAP-ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 272 (409)
Q Consensus 195 illVvD~~~~~-~~~~~~l~~~l~~~~-~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~ 272 (409)
+++|+|++++. ........+.+...+ ..+|+|+|+||+|++..... ........+ ..+++||++|.|++.|++
T Consensus 275 llhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~~~~~~~--~~v~iSA~~~~gl~~L~~ 349 (411)
T COG2262 275 LLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI---LAELERGSP--NPVFISAKTGEGLDLLRE 349 (411)
T ss_pred EEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh---hhhhhhcCC--CeEEEEeccCcCHHHHHH
Confidence 99999999885 222222333333321 56899999999998865542 122222222 579999999999999999
Q ss_pred HHHhhCCCC
Q 015293 273 WILTKLPLG 281 (409)
Q Consensus 273 ~L~~~l~~~ 281 (409)
.|...++..
T Consensus 350 ~i~~~l~~~ 358 (411)
T COG2262 350 RIIELLSGL 358 (411)
T ss_pred HHHHHhhhc
Confidence 999988744
No 85
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.79 E-value=1.8e-18 Score=151.79 Aligned_cols=152 Identities=20% Similarity=0.162 Sum_probs=99.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|+|||||++++++.++. ....+..+.+.....+..++ ..+.+|||||. ..+.. .....+..+|
T Consensus 5 v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~-------~~~~~~~~~d 74 (164)
T smart00175 5 LIGDSGVGKSSLLSRFTDGKFS-EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ--ERFRS-------ITSSYYRGAV 74 (164)
T ss_pred EECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCh--HHHHH-------HHHHHhCCCC
Confidence 8999999999999999988763 22223323222222233333 57899999993 33222 2334478899
Q ss_pred eEEEEeeCCCCCCh--HHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~~~--~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
++++|+|++++... ...++.........+.|+++|+||+|+..... ......... ..+ .+++++||++|.|+++
T Consensus 75 ~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~-~~~-~~~~e~Sa~~~~~i~~ 152 (164)
T smart00175 75 GALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAE-EHG-LPFFETSAKTNTNVEE 152 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHH-HcC-CeEEEEeCCCCCCHHH
Confidence 99999999875422 22233232222125799999999999875321 222222222 233 4799999999999999
Q ss_pred HHHHHHhhCC
Q 015293 270 IRDWILTKLP 279 (409)
Q Consensus 270 L~~~L~~~l~ 279 (409)
++++|.+.+.
T Consensus 153 l~~~i~~~~~ 162 (164)
T smart00175 153 AFEELAREIL 162 (164)
T ss_pred HHHHHHHHHh
Confidence 9999988654
No 86
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.79 E-value=1.6e-18 Score=153.37 Aligned_cols=150 Identities=23% Similarity=0.311 Sum_probs=98.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEE-EEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI-LGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~-~~~--~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++|.+|||||||++++.+..+. ...+.|+.... ... +......+.+|||||. ..+..+ ....++.+
T Consensus 7 iiG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~~~~ 75 (166)
T cd04122 7 IIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQ--ERFRAV-------TRSYYRGA 75 (166)
T ss_pred EECCCCCCHHHHHHHHhcCCCC--CCCCcccceeEEEEEEEECCEEEEEEEEECCCc--HHHHHH-------HHHHhcCC
Confidence 9999999999999999988763 33344432222 222 2223457899999993 333222 34457899
Q ss_pred ceEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 193 DCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 193 DvillVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~--~~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
|++++|+|++++. .....++.........+.|+++|+||+|+.....+ .....+... .+ .+++++||++|.|++
T Consensus 76 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~e~Sa~~~~~i~ 153 (166)
T cd04122 76 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADE-NG-LLFLECSAKTGENVE 153 (166)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHH-cC-CEEEEEECCCCCCHH
Confidence 9999999998754 22223333222211256899999999999654322 222222222 22 479999999999999
Q ss_pred HHHHHHHhhC
Q 015293 269 DIRDWILTKL 278 (409)
Q Consensus 269 ~L~~~L~~~l 278 (409)
+++..+...+
T Consensus 154 e~f~~l~~~~ 163 (166)
T cd04122 154 DAFLETAKKI 163 (166)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 87
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.79 E-value=1.7e-18 Score=152.11 Aligned_cols=151 Identities=18% Similarity=0.205 Sum_probs=98.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeee-cCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~-~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|.+|||||||+++|++.++.... +..+.........+......+.+|||||. ..+.. .....++.+|+
T Consensus 5 v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~--~~~~~-------~~~~~~~~~~~ 75 (161)
T cd04113 5 IIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQ--ERFRS-------VTRSYYRGAAG 75 (161)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcch--HHHHH-------hHHHHhcCCCE
Confidence 8999999999999999988764321 12222222222223333467899999994 33222 23445789999
Q ss_pred EEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 195 IVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 195 illVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~--~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
+++|+|++++.. ....++.........+.|+++|+||+|+...... ......... .+ .+++++||++|.|++++
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~~i~~~ 153 (161)
T cd04113 76 ALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQE-NG-LLFLETSALTGENVEEA 153 (161)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHH-cC-CEEEEEECCCCCCHHHH
Confidence 999999987642 2233333221111267899999999999653221 222222222 23 57999999999999999
Q ss_pred HHHHHhh
Q 015293 271 RDWILTK 277 (409)
Q Consensus 271 ~~~L~~~ 277 (409)
++++.+.
T Consensus 154 ~~~~~~~ 160 (161)
T cd04113 154 FLKCARS 160 (161)
T ss_pred HHHHHHh
Confidence 9999864
No 88
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.79 E-value=2.1e-18 Score=152.73 Aligned_cols=152 Identities=18% Similarity=0.204 Sum_probs=99.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEE-EEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR-ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~-~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|.+|||||||+|++.+..+.. ..+.+.... ....+......+.+|||||... .. ..+...+..+|+
T Consensus 5 ivG~~~vGKTsl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~-------~~~~~~~~~ad~ 73 (166)
T cd01893 5 LIGDEGVGKSSLIMSLVSEEFPE--NVPRVLPEITIPADVTPERVPTTIVDTSSRPQ--DR-------ANLAAEIRKANV 73 (166)
T ss_pred EECCCCCCHHHHHHHHHhCcCCc--cCCCcccceEeeeeecCCeEEEEEEeCCCchh--hh-------HHHhhhcccCCE
Confidence 89999999999999999887642 233322221 1122334557899999999532 11 123344688999
Q ss_pred EEEEeeCCCCCChHH--HHHHHHhccCCCCCCEEEEEecCCCCChhhH---HHHHHHH-HhcCCCceEEEcccCCCCCHH
Q 015293 195 IVVLVDACKAPERID--EILEEGVGDHKDKLPILLVLNKKDLIKPGEI---AKKLEWY-EKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 195 illVvD~~~~~~~~~--~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~---~~~~~~~-~~~~~~~~iv~iSA~~g~gi~ 268 (409)
+++|+|++++..-.. ..+...++....+.|+++|+||+|+.+.... ......+ .......+++++||++|.|++
T Consensus 74 ~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 153 (166)
T cd01893 74 ICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVS 153 (166)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHH
Confidence 999999987653222 2333334332357999999999999754331 1212111 222223478999999999999
Q ss_pred HHHHHHHhhC
Q 015293 269 DIRDWILTKL 278 (409)
Q Consensus 269 ~L~~~L~~~l 278 (409)
++++.+...+
T Consensus 154 ~lf~~~~~~~ 163 (166)
T cd01893 154 EVFYYAQKAV 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9999988765
No 89
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.79 E-value=1.7e-18 Score=153.61 Aligned_cols=153 Identities=18% Similarity=0.215 Sum_probs=98.6
Q ss_pred EEecCCCChHHHHHHHhCCccee-eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|.+|||||||+++++...+.. ..++.+............+...+.+|||||. +.+..+.. ..+..+|+
T Consensus 5 vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~~-------~~~~~~d~ 75 (166)
T cd00877 5 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQ--EKFGGLRD-------GYYIGGQC 75 (166)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCC--hhhccccH-------HHhcCCCE
Confidence 89999999999999998665431 1222222222222222334568899999994 33333322 23678999
Q ss_pred EEEEeeCCCCCCh--HHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHH
Q 015293 195 IVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 272 (409)
Q Consensus 195 illVvD~~~~~~~--~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~ 272 (409)
+|+|+|++++..- ...++... .....+.|+++|+||+|+........... +... ...+++++||++|.|++++++
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~i-~~~~~~~piiiv~nK~Dl~~~~~~~~~~~-~~~~-~~~~~~e~Sa~~~~~v~~~f~ 152 (166)
T cd00877 76 AIIMFDVTSRVTYKNVPNWHRDL-VRVCGNIPIVLCGNKVDIKDRKVKAKQIT-FHRK-KNLQYYEISAKSNYNFEKPFL 152 (166)
T ss_pred EEEEEECCCHHHHHHHHHHHHHH-HHhCCCCcEEEEEEchhcccccCCHHHHH-HHHH-cCCEEEEEeCCCCCChHHHHH
Confidence 9999999876422 22333332 22224799999999999973322122222 2222 335799999999999999999
Q ss_pred HHHhhCCC
Q 015293 273 WILTKLPL 280 (409)
Q Consensus 273 ~L~~~l~~ 280 (409)
+|.+.+..
T Consensus 153 ~l~~~~~~ 160 (166)
T cd00877 153 WLARKLLG 160 (166)
T ss_pred HHHHHHHh
Confidence 99987754
No 90
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.79 E-value=1.3e-18 Score=154.74 Aligned_cols=152 Identities=18% Similarity=0.164 Sum_probs=99.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||++++.+..+. ..+..+........+..++ ..+.+|||||. ..+..+.. ..+..+|
T Consensus 3 i~G~~~vGKTsli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~~-------~~~~~~d 71 (174)
T smart00174 3 VVGDGAVGKTCLLISYTTNAFP--EDYVPTVFENYSADVEVDGKPVELGLWDTAGQ--EDYDRLRP-------LSYPDTD 71 (174)
T ss_pred EECCCCCCHHHHHHHHHhCCCC--CCCCCcEEeeeeEEEEECCEEEEEEEEECCCC--cccchhch-------hhcCCCC
Confidence 8999999999999999988764 2223333333222233333 46899999994 33333322 2477999
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhh-HH------------HHHHHHHhcCCCceEEE
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IA------------KKLEWYEKFTDVDEVIP 258 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~-~~------------~~~~~~~~~~~~~~iv~ 258 (409)
++++|+|+++... .....+...+.....+.|+++|+||+|+..... .. .....+....+..++++
T Consensus 72 ~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 151 (174)
T smart00174 72 VFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLE 151 (174)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEE
Confidence 9999999987532 222223333333236899999999999865221 00 01112223334457899
Q ss_pred cccCCCCCHHHHHHHHHhhC
Q 015293 259 VSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 259 iSA~~g~gi~~L~~~L~~~l 278 (409)
+||++|.|++++++.|.+.+
T Consensus 152 ~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 152 CSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred ecCCCCCCHHHHHHHHHHHh
Confidence 99999999999999998764
No 91
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.79 E-value=2.5e-18 Score=151.57 Aligned_cols=151 Identities=19% Similarity=0.222 Sum_probs=97.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeee-cCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~-~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|.+|||||||++++++..+.... +..+.+.......+......+.+||||| ++.+..+ ...+++.+|+
T Consensus 5 vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~~~-------~~~~~~~~d~ 75 (161)
T cd04124 5 LLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAG--QERFQTM-------HASYYHKAHA 75 (161)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCC--chhhhhh-------hHHHhCCCCE
Confidence 8999999999999999987764211 1111122222222333456788999999 4333332 3445789999
Q ss_pred EEEEeeCCCCCCh--HHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHH
Q 015293 195 IVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 272 (409)
Q Consensus 195 illVvD~~~~~~~--~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~ 272 (409)
+++|+|++++... ...++ ..++....+.|+++|+||+|+.... ....... ....+ .+++++||++|.|++++++
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~-~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~-~~~~~-~~~~~~Sa~~~~gv~~l~~ 151 (161)
T cd04124 76 CILVFDVTRKITYKNLSKWY-EELREYRPEIPCIVVANKIDLDPSV-TQKKFNF-AEKHN-LPLYYVSAADGTNVVKLFQ 151 (161)
T ss_pred EEEEEECCCHHHHHHHHHHH-HHHHHhCCCCcEEEEEECccCchhH-HHHHHHH-HHHcC-CeEEEEeCCCCCCHHHHHH
Confidence 9999999876432 22233 3333322579999999999985322 1122222 22222 4789999999999999999
Q ss_pred HHHhhCC
Q 015293 273 WILTKLP 279 (409)
Q Consensus 273 ~L~~~l~ 279 (409)
.+.+.+.
T Consensus 152 ~l~~~~~ 158 (161)
T cd04124 152 DAIKLAV 158 (161)
T ss_pred HHHHHHH
Confidence 9987654
No 92
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.79 E-value=2.4e-18 Score=157.47 Aligned_cols=153 Identities=18% Similarity=0.218 Sum_probs=99.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEe---CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS---GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~---~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++|.+|||||||++++++..+.. ...+....+.....+. .....+.+|||||. +.+..+ ...+++.+
T Consensus 5 ivG~~~vGKTsli~~l~~~~~~~-~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~~~~~a 74 (201)
T cd04107 5 VIGDLGVGKTSIIKRYVHGIFSQ-HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ--ERFGGM-------TRVYYRGA 74 (201)
T ss_pred EECCCCCCHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEECCCCEEEEEEEECCCc--hhhhhh-------HHHHhCCC
Confidence 99999999999999999876532 1112222233222333 33567899999994 333333 34457899
Q ss_pred ceEEEEeeCCCCCC--hHHHHHHHHh---cc-CCCCCCEEEEEecCCCCC--hhhHHHHHHHHHhcCCCceEEEcccCCC
Q 015293 193 DCIVVLVDACKAPE--RIDEILEEGV---GD-HKDKLPILLVLNKKDLIK--PGEIAKKLEWYEKFTDVDEVIPVSAKYG 264 (409)
Q Consensus 193 DvillVvD~~~~~~--~~~~~l~~~l---~~-~~~~~p~ilvlNK~Dl~~--~~~~~~~~~~~~~~~~~~~iv~iSA~~g 264 (409)
|++++|+|++++.. ....++.... .. ...+.|++||+||+|+.. ....... ..+....++.+++++||++|
T Consensus 75 ~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~e~Sak~~ 153 (201)
T cd04107 75 VGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQM-DQFCKENGFIGWFETSAKEG 153 (201)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHH-HHHHHHcCCceEEEEeCCCC
Confidence 99999999987542 2222222211 11 125689999999999963 1122222 22233334458999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 015293 265 HGVEDIRDWILTKLP 279 (409)
Q Consensus 265 ~gi~~L~~~L~~~l~ 279 (409)
.|+++++++|.+.+.
T Consensus 154 ~~v~e~f~~l~~~l~ 168 (201)
T cd04107 154 INIEEAMRFLVKNIL 168 (201)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 93
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.79 E-value=3.1e-18 Score=156.94 Aligned_cols=153 Identities=17% Similarity=0.217 Sum_probs=101.5
Q ss_pred EEEecCCCChHHHHHHHhCCcceeeecCCCc-eEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQT-TRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~~~~~~v~~~~~t-t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
+++|.+|||||||++++....+. ..+..| +.+.....+..++ ..+.+|||+| ++.+..+ +..+++.
T Consensus 4 vvlG~~gVGKTSli~r~~~~~f~--~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaG--qe~~~~l-------~~~y~~~ 72 (202)
T cd04120 4 IIIGSRGVGKTSLMRRFTDDTFC--EACKSGVGVDFKIKTVELRGKKIRLQIWDTAG--QERFNSI-------TSAYYRS 72 (202)
T ss_pred EEECcCCCCHHHHHHHHHhCCCC--CcCCCcceeEEEEEEEEECCEEEEEEEEeCCC--chhhHHH-------HHHHhcC
Confidence 38999999999999999987764 222222 2333333344444 7789999999 4444433 3455889
Q ss_pred cceEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCceEEEcccCCCCCH
Q 015293 192 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 192 aDvillVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~-~~~~~~~~~~~~~iv~iSA~~g~gi 267 (409)
||++++|+|+++.. +....|+ ..++.. ..+.|+++|+||+|+.....+.. ....+........++.+||++|.||
T Consensus 73 ad~iIlVfDvtd~~Sf~~l~~w~-~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV 151 (202)
T cd04120 73 AKGIILVYDITKKETFDDLPKWM-KMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNV 151 (202)
T ss_pred CCEEEEEEECcCHHHHHHHHHHH-HHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCH
Confidence 99999999998764 2222332 223322 25799999999999964333221 1122222111247899999999999
Q ss_pred HHHHHHHHhhCC
Q 015293 268 EDIRDWILTKLP 279 (409)
Q Consensus 268 ~~L~~~L~~~l~ 279 (409)
+++|++|.+.+.
T Consensus 152 ~e~F~~l~~~~~ 163 (202)
T cd04120 152 DEIFLKLVDDIL 163 (202)
T ss_pred HHHHHHHHHHHH
Confidence 999999987663
No 94
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.79 E-value=3.7e-18 Score=151.37 Aligned_cols=151 Identities=17% Similarity=0.225 Sum_probs=97.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~--~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|+|||||++++++..+... ..+..+.+..... +......+.+||||| ++.+..+ ...+++.+|
T Consensus 10 vvG~~~~GKTsli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G--~~~~~~~-------~~~~~~~~d 79 (170)
T cd04116 10 LLGDGGVGKSSLMNRYVTNKFDTQ-LFHTIGVEFLNKDLEVDGHFVTLQIWDTAG--QERFRSL-------RTPFYRGSD 79 (170)
T ss_pred EECCCCCCHHHHHHHHHcCCCCcC-cCCceeeEEEEEEEEECCeEEEEEEEeCCC--hHHHHHh-------HHHHhcCCC
Confidence 999999999999999998776421 1222222222222 333446788999999 4443333 334578999
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhccC----CCCCCEEEEEecCCCCChh-hHHHHHHHHHhcCCCceEEEcccCCCCC
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPG-EIAKKLEWYEKFTDVDEVIPVSAKYGHG 266 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~~~----~~~~p~ilvlNK~Dl~~~~-~~~~~~~~~~~~~~~~~iv~iSA~~g~g 266 (409)
++++|+|+++.. .....+....+... ..+.|+++|+||+|+.... ......++... .+..+++++||++|.|
T Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 80 CCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE-NGDYPYFETSAKDATN 158 (170)
T ss_pred EEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH-CCCCeEEEEECCCCCC
Confidence 999999998754 22333333222211 1468999999999986322 12222222222 3445789999999999
Q ss_pred HHHHHHHHHhh
Q 015293 267 VEDIRDWILTK 277 (409)
Q Consensus 267 i~~L~~~L~~~ 277 (409)
+.++++.+.+.
T Consensus 159 v~~~~~~~~~~ 169 (170)
T cd04116 159 VAAAFEEAVRR 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 95
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.79 E-value=1.6e-18 Score=157.15 Aligned_cols=153 Identities=19% Similarity=0.165 Sum_probs=99.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~--~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||++++++..+.. .+..|........ .......+.+||||| ++.+..+.. .++..+|
T Consensus 5 ivG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G--~~~~~~l~~-------~~~~~a~ 73 (189)
T cd04134 5 VLGDGACGKTSLLNVFTRGYFPQ--VYEPTVFENYVHDIFVDGLHIELSLWDTAG--QEEFDRLRS-------LSYADTD 73 (189)
T ss_pred EECCCCCCHHHHHHHHhcCCCCC--ccCCcceeeeEEEEEECCEEEEEEEEECCC--Chhcccccc-------ccccCCC
Confidence 99999999999999999887642 2222222222122 222336789999999 444333322 2468899
Q ss_pred eEEEEeeCCCCCCh--HHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHH-------------HHHHHhcCCCceEEE
Q 015293 194 CIVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-------------LEWYEKFTDVDEVIP 258 (409)
Q Consensus 194 villVvD~~~~~~~--~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~-------------~~~~~~~~~~~~iv~ 258 (409)
++++|+|+++.... ....+...+.....+.|+++|+||+|+......... ...+....+..++++
T Consensus 74 ~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 153 (189)
T cd04134 74 VIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLE 153 (189)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEE
Confidence 99999999876422 222223333332357999999999999754322111 111122223357899
Q ss_pred cccCCCCCHHHHHHHHHhhCC
Q 015293 259 VSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 259 iSA~~g~gi~~L~~~L~~~l~ 279 (409)
+||++|.|++++|.+|.+.+.
T Consensus 154 ~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 154 CSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred ccCCcCCCHHHHHHHHHHHHh
Confidence 999999999999999998764
No 96
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.79 E-value=3e-18 Score=153.41 Aligned_cols=153 Identities=20% Similarity=0.225 Sum_probs=99.5
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
.++ ++|.+|||||||++++....+. ...| |+.... ......+..+.+|||||. ..+.. .+..++..
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~~~--~~~~-t~~~~~-~~~~~~~~~l~l~D~~G~--~~~~~-------~~~~~~~~ 80 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGESV--TTIP-TIGFNV-ETVTYKNISFTVWDVGGQ--DKIRP-------LWRHYYTN 80 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCC--CcCC-ccccce-EEEEECCEEEEEEECCCC--hhhHH-------HHHHHhCC
Confidence 344 9999999999999999755542 2222 222111 223456789999999994 33222 23445789
Q ss_pred cceEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHH---hcCCCceEEEcccCCCC
Q 015293 192 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVSAKYGH 265 (409)
Q Consensus 192 aDvillVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~---~~~~~~~iv~iSA~~g~ 265 (409)
||++|+|+|++++. .....++...+... ..+.|++||+||+|+.......+....+. .......++++||++|.
T Consensus 81 ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (175)
T smart00177 81 TQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGD 160 (175)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCC
Confidence 99999999998753 33334444444321 14689999999999865322222222221 11122357789999999
Q ss_pred CHHHHHHHHHhhC
Q 015293 266 GVEDIRDWILTKL 278 (409)
Q Consensus 266 gi~~L~~~L~~~l 278 (409)
|+++++++|.+.+
T Consensus 161 gv~e~~~~l~~~~ 173 (175)
T smart00177 161 GLYEGLTWLSNNL 173 (175)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 97
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.79 E-value=3.8e-18 Score=155.28 Aligned_cols=144 Identities=19% Similarity=0.193 Sum_probs=96.1
Q ss_pred EEEecCCCChHHHHHHHhCCcceeee---------------cCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhH
Q 015293 115 SVLGKPNVGKSTLANQMIGQKLSIVT---------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDS 179 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~~~~~~v~---------------~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~ 179 (409)
+++|++|+|||||+++|++....... ...++|.+.....+..++..+.+|||||.. .+
T Consensus 6 ~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~--~~----- 78 (194)
T cd01891 6 AIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHA--DF----- 78 (194)
T ss_pred EEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcH--HH-----
Confidence 39999999999999999963211111 124555555555567778899999999953 22
Q ss_pred HHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh---HHHHHHHHHhcC-----
Q 015293 180 MMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFT----- 251 (409)
Q Consensus 180 ~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~---~~~~~~~~~~~~----- 251 (409)
...+..++..+|++++|+|++++......+++..+.. .++|+++|+||+|+..... .......+....
T Consensus 79 --~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (194)
T cd01891 79 --GGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQ 154 (194)
T ss_pred --HHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCcccc
Confidence 2234456789999999999998665554454444333 5789999999999964322 222233332111
Q ss_pred CCceEEEcccCCCCCHHH
Q 015293 252 DVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 252 ~~~~iv~iSA~~g~gi~~ 269 (409)
...+++++||++|.|+.+
T Consensus 155 ~~~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 155 LDFPVLYASAKNGWASLN 172 (194)
T ss_pred CccCEEEeehhccccccc
Confidence 123789999999976643
No 98
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.79 E-value=3.9e-18 Score=153.68 Aligned_cols=153 Identities=16% Similarity=0.196 Sum_probs=101.1
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++ ++|.+|||||||++++....+....++.+ .+ ...+...+..+.+||||| +..+..+ +..+++.+
T Consensus 19 ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g--~~--~~~~~~~~~~~~i~D~~G--q~~~~~~-------~~~~~~~a 85 (181)
T PLN00223 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FN--VETVEYKNISFTVWDVGG--QDKIRPL-------WRHYFQNT 85 (181)
T ss_pred EEEEECCCCCCHHHHHHHHccCCCccccCCcc--ee--EEEEEECCEEEEEEECCC--CHHHHHH-------HHHHhccC
Confidence 44 99999999999999998665532222222 21 223455678999999999 4333322 34457899
Q ss_pred ceEEEEeeCCCCC--ChHHHHHHHHhcc-CCCCCCEEEEEecCCCCChhhHHHHHHHHHhc---CCCceEEEcccCCCCC
Q 015293 193 DCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKYGHG 266 (409)
Q Consensus 193 DvillVvD~~~~~--~~~~~~l~~~l~~-~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~---~~~~~iv~iSA~~g~g 266 (409)
|++|+|+|+++.. .....++...+.. ...+.|++||+||+|+............+... .....++++||++|+|
T Consensus 86 ~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~g 165 (181)
T PLN00223 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCC
Confidence 9999999998754 2222334433332 11468999999999987654433333332211 0112466899999999
Q ss_pred HHHHHHHHHhhCC
Q 015293 267 VEDIRDWILTKLP 279 (409)
Q Consensus 267 i~~L~~~L~~~l~ 279 (409)
+.+++++|.+.+.
T Consensus 166 v~e~~~~l~~~~~ 178 (181)
T PLN00223 166 LYEGLDWLSNNIA 178 (181)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987654
No 99
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1.5e-17 Score=166.83 Aligned_cols=151 Identities=21% Similarity=0.224 Sum_probs=122.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeC---CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~---~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++||...|||||+.++.+.+++ .....|.|.+.....+.. +...+.|+|||| |+.|..|+.++ .+-+
T Consensus 10 imGHVDHGKTtLLD~IR~t~Va-~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPG--HeAFt~mRaRG-------a~vt 79 (509)
T COG0532 10 IMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAYQVPLDVIKIPGITFIDTPG--HEAFTAMRARG-------ASVT 79 (509)
T ss_pred EeCcccCCccchhhhHhcCccc-cccCCceeeEeeeEEEEeccCCCceEEEEcCCc--HHHHHHHHhcC-------Cccc
Confidence 9999999999999999999986 355567788877666665 457899999999 78888888876 5789
Q ss_pred ceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHH------HhcCCCceEEEcccCCCCC
Q 015293 193 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWY------EKFTDVDEVIPVSAKYGHG 266 (409)
Q Consensus 193 DvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~------~~~~~~~~iv~iSA~~g~g 266 (409)
|+++||||+.++..+++.+-.+.++. .+.|+++++||+|+..........+.. +.+.+...++++||++|+|
T Consensus 80 DIaILVVa~dDGv~pQTiEAI~hak~--a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 80 DIAILVVAADDGVMPQTIEAINHAKA--AGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred cEEEEEEEccCCcchhHHHHHHHHHH--CCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 99999999999999999888888887 899999999999998544322222211 1244556899999999999
Q ss_pred HHHHHHHHHhhC
Q 015293 267 VEDIRDWILTKL 278 (409)
Q Consensus 267 i~~L~~~L~~~l 278 (409)
+++|+..|.-..
T Consensus 158 i~eLL~~ill~a 169 (509)
T COG0532 158 IDELLELILLLA 169 (509)
T ss_pred HHHHHHHHHHHH
Confidence 999999987533
No 100
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.79 E-value=2.1e-18 Score=152.05 Aligned_cols=142 Identities=15% Similarity=0.156 Sum_probs=96.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|++|+|||||+|+|.|.... . .+|... .+.. . .+|||||..... ..+.+....++..||++
T Consensus 6 ~iG~~~~GKstl~~~l~~~~~~--~---~~~~~v---~~~~--~--~~iDtpG~~~~~-----~~~~~~~~~~~~~ad~i 68 (158)
T PRK15467 6 FVGAVGAGKTTLFNALQGNYTL--A---RKTQAV---EFND--K--GDIDTPGEYFSH-----PRWYHALITTLQDVDML 68 (158)
T ss_pred EECCCCCCHHHHHHHHcCCCcc--C---ccceEE---EECC--C--CcccCCccccCC-----HHHHHHHHHHHhcCCEE
Confidence 9999999999999999986531 1 122111 1111 1 269999963211 12334444557899999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~ 275 (409)
++|+|++.+......++... ..++|+++++||+|+... ......+++.......|++++||++|+|+++|+++|.
T Consensus 69 l~v~d~~~~~s~~~~~~~~~----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 69 IYVHGANDPESRLPAGLLDI----GVSKRQIAVISKTDMPDA-DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred EEEEeCCCcccccCHHHHhc----cCCCCeEEEEEccccCcc-cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHH
Confidence 99999987754444444432 146799999999998653 2333344444443335899999999999999999999
Q ss_pred hhCC
Q 015293 276 TKLP 279 (409)
Q Consensus 276 ~~l~ 279 (409)
+.+.
T Consensus 144 ~~~~ 147 (158)
T PRK15467 144 SLTK 147 (158)
T ss_pred Hhch
Confidence 8875
No 101
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.79 E-value=3.2e-18 Score=154.34 Aligned_cols=153 Identities=20% Similarity=0.164 Sum_probs=99.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeC---CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~---~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++|.+|+|||||++++.+..+. ..+..|+.......+.. ....+.+|||||. ..+..+ ...++..+
T Consensus 5 vvG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~~~a 73 (187)
T cd04132 5 VVGDGGCGKTCLLIVYSQGKFP--EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQ--EEYDRL-------RPLSYPDV 73 (187)
T ss_pred EECCCCCCHHHHHHHHHhCcCC--CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCc--hhHHHH-------HHHhCCCC
Confidence 8999999999999999988764 33333433322222222 2357899999994 333333 22347899
Q ss_pred ceEEEEeeCCCCCChH--HHHHHHHhccCCCCCCEEEEEecCCCCChhh----H-HHHHHHHHhcCCCceEEEcccCCCC
Q 015293 193 DCIVVLVDACKAPERI--DEILEEGVGDHKDKLPILLVLNKKDLIKPGE----I-AKKLEWYEKFTDVDEVIPVSAKYGH 265 (409)
Q Consensus 193 DvillVvD~~~~~~~~--~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~----~-~~~~~~~~~~~~~~~iv~iSA~~g~ 265 (409)
|++++|+|+++...-. ...+...+.....+.|+++|+||+|+..... + ......+....+..+++++||++|.
T Consensus 74 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 153 (187)
T cd04132 74 DVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTME 153 (187)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCC
Confidence 9999999998754221 1222222222235789999999999865321 0 1112222222344478999999999
Q ss_pred CHHHHHHHHHhhCC
Q 015293 266 GVEDIRDWILTKLP 279 (409)
Q Consensus 266 gi~~L~~~L~~~l~ 279 (409)
|+++++..+.+.+.
T Consensus 154 ~v~~~f~~l~~~~~ 167 (187)
T cd04132 154 NVEEVFDTAIEEAL 167 (187)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987764
No 102
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.79 E-value=2.6e-18 Score=151.20 Aligned_cols=151 Identities=21% Similarity=0.189 Sum_probs=97.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||++++++..+.. ....|..+.....+..++ ..+.||||||. +.+..+.. .++..+|
T Consensus 6 i~G~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~~-------~~~~~ad 74 (163)
T cd04176 6 VLGSGGVGKSALTVQFVSGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGT--EQFASMRD-------LYIKNGQ 74 (163)
T ss_pred EECCCCCCHHHHHHHHHcCCCCC--CCCCchhheEEEEEEECCEEEEEEEEECCCc--ccccchHH-------HHHhhCC
Confidence 99999999999999999876642 233333333222333333 45789999994 44444422 3467899
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~-~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
++++|+|+++.. .....++....+.. ..++|+++|+||+|+.....+.. ....+....+ .+++++||++|.|+.+
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~ 153 (163)
T cd04176 75 GFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWG-CPFMETSAKSKTMVNE 153 (163)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhC-CEEEEecCCCCCCHHH
Confidence 999999998754 22333332222211 15799999999999864322111 1122222223 3789999999999999
Q ss_pred HHHHHHhhC
Q 015293 270 IRDWILTKL 278 (409)
Q Consensus 270 L~~~L~~~l 278 (409)
++.+|.+.+
T Consensus 154 l~~~l~~~l 162 (163)
T cd04176 154 LFAEIVRQM 162 (163)
T ss_pred HHHHHHHhc
Confidence 999998754
No 103
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.79 E-value=1.4e-18 Score=157.52 Aligned_cols=152 Identities=20% Similarity=0.174 Sum_probs=97.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+++|.+..+. ...++|+.+.....+..++ ..+.+|||||. ..+..+ ...+++.+|
T Consensus 4 ivG~~~vGKTsli~~l~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~~~ad 72 (190)
T cd04144 4 VLGDGGVGKTALTIQLCLNHFV--ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQ--EEYTAL-------RDQWIREGE 72 (190)
T ss_pred EECCCCCCHHHHHHHHHhCCCC--ccCCCchHhhEEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHHHHHhCC
Confidence 8999999999999999987764 2334444332222223333 46889999994 333333 223578899
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhccC---CCCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCceEEEcccCCCCCH
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~~~---~~~~p~ilvlNK~Dl~~~~~~~~-~~~~~~~~~~~~~iv~iSA~~g~gi 267 (409)
++|+|+|+++.. .....++..+.... ..+.|+++|+||+|+.....+.. ....+....+ .+++++||++|.|+
T Consensus 73 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~SAk~~~~v 151 (190)
T cd04144 73 GFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLG-CEFIEASAKTNVNV 151 (190)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhC-CEEEEecCCCCCCH
Confidence 999999998754 22223332221111 14689999999999964322111 1112222223 37899999999999
Q ss_pred HHHHHHHHhhCC
Q 015293 268 EDIRDWILTKLP 279 (409)
Q Consensus 268 ~~L~~~L~~~l~ 279 (409)
++++++|.+.+.
T Consensus 152 ~~l~~~l~~~l~ 163 (190)
T cd04144 152 ERAFYTLVRALR 163 (190)
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 104
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.79 E-value=3.3e-18 Score=149.70 Aligned_cols=148 Identities=22% Similarity=0.296 Sum_probs=100.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|.+|||||||++++++.......+..+.+.+ .+...+..+.+|||||. ..+..+ ....+..+|++
T Consensus 4 iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~D~~G~--~~~~~~-------~~~~~~~~~~~ 70 (158)
T cd00878 4 ILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVE----TVEYKNVSFTVWDVGGQ--DKIRPL-------WKHYYENTNGI 70 (158)
T ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceE----EEEECCEEEEEEECCCC--hhhHHH-------HHHHhccCCEE
Confidence 899999999999999999874433333333332 23445688999999994 332222 33456889999
Q ss_pred EEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCceEEEcccCCCCCHHH
Q 015293 196 VVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 196 llVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~---~~~~~~iv~iSA~~g~gi~~ 269 (409)
++|+|++++. .....++....... ..+.|+++|+||+|+.......+....+.. .....+++++||++|.|+++
T Consensus 71 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 150 (158)
T cd00878 71 IFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDE 150 (158)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHH
Confidence 9999998763 22223333332321 257899999999999865433333333322 12345899999999999999
Q ss_pred HHHHHHh
Q 015293 270 IRDWILT 276 (409)
Q Consensus 270 L~~~L~~ 276 (409)
++++|..
T Consensus 151 ~~~~l~~ 157 (158)
T cd00878 151 GLDWLLQ 157 (158)
T ss_pred HHHHHhh
Confidence 9999875
No 105
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.79 E-value=3.8e-18 Score=153.88 Aligned_cols=155 Identities=19% Similarity=0.222 Sum_probs=97.1
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEE-EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI-CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~-~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|.+|||||||++++.+..+....++.+.+....... ....+..+.+|||||. +.+..+ +...+..||+
T Consensus 8 ~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~~~~~~d~ 78 (183)
T cd04152 8 MLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQ--EKLRPL-------WKSYTRCTDG 78 (183)
T ss_pred EECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCc--HhHHHH-------HHHHhccCCE
Confidence 99999999999999999876542212222222221111 1235678999999994 332222 3345789999
Q ss_pred EEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHH--hcC--CCceEEEcccCCCCCH
Q 015293 195 IVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE--KFT--DVDEVIPVSAKYGHGV 267 (409)
Q Consensus 195 illVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~--~~~--~~~~iv~iSA~~g~gi 267 (409)
+++|+|++++. .....++....... ..++|+++|+||+|+.............. ... ...+++++||++|.|+
T Consensus 79 ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 79 IVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence 99999998753 22222222222211 15689999999999864322222222111 111 1236889999999999
Q ss_pred HHHHHHHHhhCC
Q 015293 268 EDIRDWILTKLP 279 (409)
Q Consensus 268 ~~L~~~L~~~l~ 279 (409)
++|+++|.+.+.
T Consensus 159 ~~l~~~l~~~l~ 170 (183)
T cd04152 159 QEGLEKLYEMIL 170 (183)
T ss_pred HHHHHHHHHHHH
Confidence 999999987663
No 106
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.79 E-value=2.2e-18 Score=148.34 Aligned_cols=136 Identities=20% Similarity=0.298 Sum_probs=89.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|++|||||||+|+|++.... ... |. .+.+.+ .+|||||... . .....+.....++.||++
T Consensus 5 liG~~~vGKSsL~~~l~~~~~~----~~~-t~-----~~~~~~---~~iDt~G~~~-~----~~~~~~~~~~~~~~ad~v 66 (142)
T TIGR02528 5 FIGSVGCGKTTLTQALQGEEIL----YKK-TQ-----AVEYND---GAIDTPGEYV-E----NRRLYSALIVTAADADVI 66 (142)
T ss_pred EECCCCCCHHHHHHHHcCCccc----ccc-ce-----eEEEcC---eeecCchhhh-h----hHHHHHHHHHHhhcCCEE
Confidence 9999999999999999988653 111 11 111111 6899999521 1 111223333457899999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh-HHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 274 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~-~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L 274 (409)
++|+|++++.......+... ...|+++|+||+|+.+... ......+... .+..+++++||++|.|+++|+++|
T Consensus 67 ilv~d~~~~~s~~~~~~~~~-----~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 67 ALVQSATDPESRFPPGFASI-----FVKPVIGLVTKIDLAEADVDIERAKELLET-AGAEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred EEEecCCCCCcCCChhHHHh-----ccCCeEEEEEeeccCCcccCHHHHHHHHHH-cCCCcEEEEecCCCCCHHHHHHHH
Confidence 99999988775433333332 1349999999999865321 2222222222 234478999999999999999987
Q ss_pred H
Q 015293 275 L 275 (409)
Q Consensus 275 ~ 275 (409)
.
T Consensus 141 ~ 141 (142)
T TIGR02528 141 N 141 (142)
T ss_pred h
Confidence 5
No 107
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.78 E-value=3.2e-18 Score=147.61 Aligned_cols=153 Identities=27% Similarity=0.408 Sum_probs=105.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|+|||||+|+|++.. ......++++.+.....+..++ ..+.+|||||. ..+..+.......+...+..+|
T Consensus 6 ~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--~~~~~~~~~~~~~~~~~i~~~d 82 (161)
T TIGR00231 6 IVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ--EDYRAIRRLYYRAVESSLRVFD 82 (161)
T ss_pred EECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCc--ccchHHHHHHHhhhhEEEEEEE
Confidence 99999999999999999988 5567778888887776666666 77899999994 4444444444444444455556
Q ss_pred eEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHH
Q 015293 194 CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDW 273 (409)
Q Consensus 194 villVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~ 273 (409)
++++|+|+.+........+..... .+.|+++|+||+|+............+.. .+..+++++||++|.|+.+++++
T Consensus 83 ~~~~v~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~gv~~~~~~ 158 (161)
T TIGR00231 83 IVILVLDVEEILEKQTKEIIHHAE---SNVPIILVGNKIDLRDAKLKTHVAFLFAK-LNGEPIIPLSAETGKNIDSAFKI 158 (161)
T ss_pred EeeeehhhhhHhHHHHHHHHHhcc---cCCcEEEEEEcccCCcchhhHHHHHHHhh-ccCCceEEeecCCCCCHHHHHHH
Confidence 555555554433233333333321 37899999999999764322222233333 23457999999999999999998
Q ss_pred HH
Q 015293 274 IL 275 (409)
Q Consensus 274 L~ 275 (409)
|.
T Consensus 159 l~ 160 (161)
T TIGR00231 159 VE 160 (161)
T ss_pred hh
Confidence 74
No 108
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.78 E-value=3e-18 Score=153.00 Aligned_cols=151 Identities=15% Similarity=0.175 Sum_probs=97.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||++++.+..+. .....|..+.....+..++ ..+.+|||||. ..+..+ ...++..+|
T Consensus 7 vvG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~l-------~~~~~~~~d 75 (172)
T cd04141 7 MLGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARIDNEPALLDILDTAGQ--AEFTAM-------RDQYMRCGE 75 (172)
T ss_pred EECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEECCEEEEEEEEeCCCc--hhhHHH-------hHHHhhcCC
Confidence 9999999999999999987764 2223333322222233333 57899999994 343333 334477899
Q ss_pred eEEEEeeCCCCCChHH-HHHHHHhcc--CCCCCCEEEEEecCCCCChhhHH--HHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 194 CIVVLVDACKAPERID-EILEEGVGD--HKDKLPILLVLNKKDLIKPGEIA--KKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 194 villVvD~~~~~~~~~-~~l~~~l~~--~~~~~p~ilvlNK~Dl~~~~~~~--~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
++++|+|+++...-.. ..+...+.. ...+.|+++|+||+|+.....+. ........ .+ .++++|||++|.||+
T Consensus 76 ~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~-~~-~~~~e~Sa~~~~~v~ 153 (172)
T cd04141 76 GFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLARE-FN-CPFFETSAALRHYID 153 (172)
T ss_pred EEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHH-hC-CEEEEEecCCCCCHH
Confidence 9999999987653221 111122211 12579999999999986432221 11222222 23 479999999999999
Q ss_pred HHHHHHHhhCC
Q 015293 269 DIRDWILTKLP 279 (409)
Q Consensus 269 ~L~~~L~~~l~ 279 (409)
++|++|...+.
T Consensus 154 ~~f~~l~~~~~ 164 (172)
T cd04141 154 DAFHGLVREIR 164 (172)
T ss_pred HHHHHHHHHHH
Confidence 99999987553
No 109
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.78 E-value=4.6e-18 Score=156.06 Aligned_cols=114 Identities=24% Similarity=0.368 Sum_probs=78.8
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCC-CChHHHHHHHHhccCCCCCCEEEEEecCCCCCh
Q 015293 159 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 237 (409)
Q Consensus 159 ~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~-~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~ 237 (409)
.++.||||||. .. +...+..++..+|++++|+|++++ ........+..+... ...|+++|+||+|+...
T Consensus 83 ~~i~~iDtPG~--~~-------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~~~~iiivvNK~Dl~~~ 152 (203)
T cd01888 83 RHVSFVDCPGH--EI-------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-GLKHIIIVQNKIDLVKE 152 (203)
T ss_pred cEEEEEECCCh--HH-------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-CCCcEEEEEEchhccCH
Confidence 68999999993 22 455677778899999999999874 333323333333321 23579999999999864
Q ss_pred hhHHHHHHHHHhc-----CCCceEEEcccCCCCCHHHHHHHHHhhCCCCC
Q 015293 238 GEIAKKLEWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 282 (409)
Q Consensus 238 ~~~~~~~~~~~~~-----~~~~~iv~iSA~~g~gi~~L~~~L~~~l~~~~ 282 (409)
.......+.+... ....+++++||++|+|+++|+++|.+.++++|
T Consensus 153 ~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 153 EQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred HHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence 4433222222211 12357999999999999999999999988654
No 110
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.78 E-value=6.2e-18 Score=149.73 Aligned_cols=153 Identities=24% Similarity=0.280 Sum_probs=98.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeC--CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~--~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|++|+|||||+|++++..... ...+....+.....+.. ...++.+|||||. ..+..+ ....++.+|
T Consensus 5 viG~~~~GKSsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~--~~~~~~-------~~~~~~~~d 74 (172)
T cd01862 5 ILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVTVDDKLVTLQIWDTAGQ--ERFQSL-------GVAFYRGAD 74 (172)
T ss_pred EECCCCCCHHHHHHHHhcCCCCc-CcCCccceEEEEEEEEECCEEEEEEEEeCCCh--HHHHhH-------HHHHhcCCC
Confidence 89999999999999999887542 11222222222222233 3356789999994 333322 334578999
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccC----CCCCCEEEEEecCCCCChh--hHHHHHHHHHhcCCCceEEEcccCCCC
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDH----KDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGH 265 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~----~~~~p~ilvlNK~Dl~~~~--~~~~~~~~~~~~~~~~~iv~iSA~~g~ 265 (409)
++|+|+|++++.. ....+....+... ..+.|+++|+||+|+..+. ......... ...+..+++++||++|.
T Consensus 75 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~ 153 (172)
T cd01862 75 CCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWC-QSNGNIPYFETSAKEAI 153 (172)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHH-HHcCCceEEEEECCCCC
Confidence 9999999987542 1222222222211 1378999999999997322 122222333 33344689999999999
Q ss_pred CHHHHHHHHHhhCC
Q 015293 266 GVEDIRDWILTKLP 279 (409)
Q Consensus 266 gi~~L~~~L~~~l~ 279 (409)
|+++++++|.+.+.
T Consensus 154 gv~~l~~~i~~~~~ 167 (172)
T cd01862 154 NVEQAFETIARKAL 167 (172)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987654
No 111
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.78 E-value=3.1e-18 Score=151.57 Aligned_cols=150 Identities=20% Similarity=0.181 Sum_probs=97.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~--~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+++|++.++. .....+..+..... .......+.+|||||.. .+..+.. ..+..+|
T Consensus 5 i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~--~~~~~~~-------~~~~~~~ 73 (171)
T cd00157 5 VVGDGAVGKTCLLISYTTGKFP--TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQE--EYDRLRP-------LSYPNTD 73 (171)
T ss_pred EECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcc--cccccch-------hhcCCCC
Confidence 8999999999999999988763 22223332222222 23334579999999953 2222222 2357899
Q ss_pred eEEEEeeCCCCCCh--HHHHHHHHhccCCCCCCEEEEEecCCCCChhhH------------HHHHHHHHhcCCCceEEEc
Q 015293 194 CIVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI------------AKKLEWYEKFTDVDEVIPV 259 (409)
Q Consensus 194 villVvD~~~~~~~--~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~------------~~~~~~~~~~~~~~~iv~i 259 (409)
++++|+|+++.... ....+...+.....+.|+++|+||+|+...... ......+....+..+++++
T Consensus 74 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 153 (171)
T cd00157 74 VFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMEC 153 (171)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEe
Confidence 99999999875422 222223333332257999999999999755432 1111222223344489999
Q ss_pred ccCCCCCHHHHHHHHHh
Q 015293 260 SAKYGHGVEDIRDWILT 276 (409)
Q Consensus 260 SA~~g~gi~~L~~~L~~ 276 (409)
||++|.|+++++++|.+
T Consensus 154 Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 154 SALTQEGVKEVFEEAIR 170 (171)
T ss_pred ecCCCCCHHHHHHHHhh
Confidence 99999999999999875
No 112
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.78 E-value=5.6e-18 Score=146.79 Aligned_cols=149 Identities=21% Similarity=0.249 Sum_probs=97.7
Q ss_pred EEecCCCChHHHHHHHhCCcceee-ecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v-~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|.+|+|||||+|++.+.+.... .++.+.+..............+.+|||||. ..+. ......++.+|+
T Consensus 5 ~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~-------~~~~~~~~~~d~ 75 (159)
T cd00154 5 LIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQ--ERFR-------SITPSYYRGAHG 75 (159)
T ss_pred EECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCCh--HHHH-------HHHHHHhcCCCE
Confidence 899999999999999999887643 222233333222233334477899999994 2222 234455788999
Q ss_pred EEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCC-Chh-hHHHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 195 IVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPG-EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 195 illVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~-~~~-~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
+++|+|++++. .....++...........|+++++||+|+. ... ........... ...+++.+||++|.|++++
T Consensus 76 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~i~~~ 153 (159)
T cd00154 76 AILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKE--NGLLFFETSAKTGENVEEL 153 (159)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHH--cCCeEEEEecCCCCCHHHH
Confidence 99999998743 222233323222211469999999999996 221 22222232222 2358999999999999999
Q ss_pred HHHHH
Q 015293 271 RDWIL 275 (409)
Q Consensus 271 ~~~L~ 275 (409)
+++|.
T Consensus 154 ~~~i~ 158 (159)
T cd00154 154 FQSLA 158 (159)
T ss_pred HHHHh
Confidence 99986
No 113
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.78 E-value=7.6e-18 Score=176.05 Aligned_cols=149 Identities=23% Similarity=0.287 Sum_probs=100.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCC-ceEEEEEEEEeC------------------CCeeEEEEeCCCCchhhhhh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQ-TTRHRILGICSG------------------PEYQMILYDTPGIIEKKIHM 176 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~-tt~~~~~~~~~~------------------~~~~i~liDtpG~~~~~~~~ 176 (409)
++|++|+|||||+|+|++..+. ...++ +|++.....+.. ...++.|||||| ++.+..
T Consensus 9 IiG~~d~GKTSLln~l~~~~v~--~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG--~e~f~~ 84 (590)
T TIGR00491 9 VLGHVDHGKTTLLDKIRGSAVA--KREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPG--HEAFTN 84 (590)
T ss_pred EECCCCCCHHHHHHHHhccccc--cccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCC--cHhHHH
Confidence 9999999999999999998764 23333 444321111111 112489999999 444444
Q ss_pred HhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh-----------------
Q 015293 177 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE----------------- 239 (409)
Q Consensus 177 l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~----------------- 239 (409)
+. ...+..+|++++|+|++++...++......++. .+.|+++|+||+|+.....
T Consensus 85 l~-------~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~ 155 (590)
T TIGR00491 85 LR-------KRGGALADLAILIVDINEGFKPQTQEALNILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ 155 (590)
T ss_pred HH-------HHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence 32 234679999999999998776666666666655 6789999999999964210
Q ss_pred HHH--------HHHHHH-------------hcCCCceEEEcccCCCCCHHHHHHHHHhh
Q 015293 240 IAK--------KLEWYE-------------KFTDVDEVIPVSAKYGHGVEDIRDWILTK 277 (409)
Q Consensus 240 ~~~--------~~~~~~-------------~~~~~~~iv~iSA~~g~gi~~L~~~L~~~ 277 (409)
+.. ....+. .+.+..+++++||++|+|+++|+.+|...
T Consensus 156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 000 000111 12344689999999999999999988654
No 114
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.78 E-value=4.7e-18 Score=155.23 Aligned_cols=159 Identities=18% Similarity=0.185 Sum_probs=103.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||++++++..+. ..+..|+.......+..++ ..+.+|||||. ..+..+ ...++..+|
T Consensus 4 vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~--~~~~~~-------~~~~~~~ad 72 (198)
T cd04147 4 FMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGS--YSFPAM-------RKLSIQNSD 72 (198)
T ss_pred EECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCc--hhhhHH-------HHHHhhcCC
Confidence 8999999999999999987764 3333444333333344444 57899999994 333222 223578999
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccC-CCCCCEEEEEecCCCCCh-hhHH--HHHHHHHhcCCCceEEEcccCCCCCH
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDH-KDKLPILLVLNKKDLIKP-GEIA--KKLEWYEKFTDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~-~~~~--~~~~~~~~~~~~~~iv~iSA~~g~gi 267 (409)
++++|+|++++.. ....++....... ..++|+++|+||+|+... ..+. ........ ....+++++||++|.|+
T Consensus 73 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~-~~~~~~~~~Sa~~g~gv 151 (198)
T cd04147 73 AFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVEL-DWNCGFVETSAKDNENV 151 (198)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHh-hcCCcEEEecCCCCCCH
Confidence 9999999987532 1222222222211 157999999999998652 2111 11111111 11246899999999999
Q ss_pred HHHHHHHHhhCCCCCCCCC
Q 015293 268 EDIRDWILTKLPLGPAYYP 286 (409)
Q Consensus 268 ~~L~~~L~~~l~~~~~~~~ 286 (409)
++++++|.+.+...++.+|
T Consensus 152 ~~l~~~l~~~~~~~~~~~~ 170 (198)
T cd04147 152 LEVFKELLRQANLPYNLSP 170 (198)
T ss_pred HHHHHHHHHHhhcccccch
Confidence 9999999998876666555
No 115
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.78 E-value=6.6e-18 Score=148.65 Aligned_cols=152 Identities=18% Similarity=0.264 Sum_probs=96.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceE-EEEEEE--E-eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRILGI--C-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~-~~~~~~--~-~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
++|.+|||||||++++.+........+..|+. +..... + ......+.+||||| +..+..+ ....+..
T Consensus 5 vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G--~~~~~~~-------~~~~~~~ 75 (164)
T cd04101 5 VVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAG--QELYSDM-------VSNYWES 75 (164)
T ss_pred EECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCC--HHHHHHH-------HHHHhCC
Confidence 89999999999999998653211233333332 221111 2 23447899999999 4333322 2344789
Q ss_pred cceEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 192 ADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 192 aDvillVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~-~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
+|++++|+|+++... ....++ +.+.....+.|+++|+||+|+.+...+.. ....+....+ .+++++||++|.|++
T Consensus 76 ~d~ii~v~d~~~~~s~~~~~~~~-~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~ 153 (164)
T cd04101 76 PSVFILVYDVSNKASFENCSRWV-NKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQ-LKFFKTSALRGVGYE 153 (164)
T ss_pred CCEEEEEEECcCHHHHHHHHHHH-HHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcC-CeEEEEeCCCCCChH
Confidence 999999999986532 222333 22222224689999999999965432221 1122222222 478999999999999
Q ss_pred HHHHHHHhhC
Q 015293 269 DIRDWILTKL 278 (409)
Q Consensus 269 ~L~~~L~~~l 278 (409)
++++.|.+.+
T Consensus 154 ~l~~~l~~~~ 163 (164)
T cd04101 154 EPFESLARAF 163 (164)
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 116
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.78 E-value=5e-18 Score=157.13 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=98.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeC---CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~---~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++|.+|||||||+++|.+..+. ....+..+.+.....+.. ....+.+||||| +..+..+ ...++..|
T Consensus 5 ivG~~~vGKSsLi~~l~~~~~~-~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G--~~~~~~l-------~~~~~~~a 74 (215)
T cd04109 5 VLGDGAVGKTSLCRRFAKEGFG-KSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGG--QSIGGKM-------LDKYIYGA 74 (215)
T ss_pred EECcCCCCHHHHHHHHhcCCCC-CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCC--cHHHHHH-------HHHHhhcC
Confidence 8999999999999999987763 122233333443333333 246889999999 4333333 22347899
Q ss_pred ceEEEEeeCCCCC--ChHHHHHHHHhccC---CCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCceEEEcccCCCCC
Q 015293 193 DCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 266 (409)
Q Consensus 193 DvillVvD~~~~~--~~~~~~l~~~l~~~---~~~~p~ilvlNK~Dl~~~~~~-~~~~~~~~~~~~~~~iv~iSA~~g~g 266 (409)
|++|+|+|++++. .....++..+.+.. ..+.|+++|+||+|+.....+ ......+....+ .+++++||++|+|
T Consensus 75 d~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~-~~~~~iSAktg~g 153 (215)
T cd04109 75 HAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANG-MESCLVSAKTGDR 153 (215)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEECCCCCC
Confidence 9999999998753 22222222221111 134689999999999643221 111222222233 3789999999999
Q ss_pred HHHHHHHHHhhCCC
Q 015293 267 VEDIRDWILTKLPL 280 (409)
Q Consensus 267 i~~L~~~L~~~l~~ 280 (409)
+++++++|.+.+..
T Consensus 154 v~~lf~~l~~~l~~ 167 (215)
T cd04109 154 VNLLFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987653
No 117
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.78 E-value=5.5e-18 Score=152.85 Aligned_cols=154 Identities=23% Similarity=0.270 Sum_probs=99.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCce-EEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt-~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++|.+|||||||++++++..+. ..+..|. .+.....+..++ ..+.+|||+| ++.+..+ ...+++.|
T Consensus 5 vlG~~~vGKTsLi~~~~~~~f~--~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G--~~~~~~~-------~~~~~~~a 73 (182)
T cd04128 5 LLGDAQIGKTSLMVKYVEGEFD--EDYIQTLGVNFMEKTISIRGTEITFSIWDLGG--QREFINM-------LPLVCNDA 73 (182)
T ss_pred EECCCCCCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEEECCEEEEEEEEeCCC--chhHHHh-------hHHHCcCC
Confidence 8999999999999999987764 2233332 222222333333 6789999999 4443333 23457899
Q ss_pred ceEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCCh----h--hHHHHHHHHHhcCCCceEEEcccCCC
Q 015293 193 DCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKP----G--EIAKKLEWYEKFTDVDEVIPVSAKYG 264 (409)
Q Consensus 193 DvillVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~----~--~~~~~~~~~~~~~~~~~iv~iSA~~g 264 (409)
|++++|+|+++... ....|+....+......| ++|+||+|+... . .+......+....+ .+++++||++|
T Consensus 74 ~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~e~SAk~g 151 (182)
T cd04128 74 VAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-APLIFCSTSHS 151 (182)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC-CEEEEEeCCCC
Confidence 99999999987642 222344333222123456 688999998521 1 11122222333333 47899999999
Q ss_pred CCHHHHHHHHHhhCCCCC
Q 015293 265 HGVEDIRDWILTKLPLGP 282 (409)
Q Consensus 265 ~gi~~L~~~L~~~l~~~~ 282 (409)
.|+++++++|.+.+..-|
T Consensus 152 ~~v~~lf~~l~~~l~~~~ 169 (182)
T cd04128 152 INVQKIFKIVLAKAFDLP 169 (182)
T ss_pred CCHHHHHHHHHHHHHhcC
Confidence 999999999998775433
No 118
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.78 E-value=3.9e-18 Score=154.19 Aligned_cols=154 Identities=17% Similarity=0.175 Sum_probs=98.2
Q ss_pred EEecCCCChHHHHHHHhCCccee-eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|.+|||||||++++.+..+.. ..++.+.+.......+......+.+|||||. ..+..+ ....++.+|+
T Consensus 5 v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~--~~~~~~-------~~~~~~~~d~ 75 (188)
T cd04125 5 IIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQ--ERFRSL-------NNSYYRGAHG 75 (188)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCc--HHHHhh-------HHHHccCCCE
Confidence 89999999999999999887743 1222222222222222233457889999994 333222 3445789999
Q ss_pred EEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCceEEEcccCCCCCHHHHH
Q 015293 195 IVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 271 (409)
Q Consensus 195 illVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~-~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~ 271 (409)
+++|+|++++. .....++...........|+++|+||+|+.....+. .....+....+. +++++||++|.|+++++
T Consensus 76 iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~~~~~i~~~f 154 (188)
T cd04125 76 YLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNI-PFFETSAKQSINVEEAF 154 (188)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHH
Confidence 99999998754 222233322222112468999999999987433211 111122222233 79999999999999999
Q ss_pred HHHHhhCC
Q 015293 272 DWILTKLP 279 (409)
Q Consensus 272 ~~L~~~l~ 279 (409)
++|.+.+.
T Consensus 155 ~~l~~~~~ 162 (188)
T cd04125 155 ILLVKLII 162 (188)
T ss_pred HHHHHHHH
Confidence 99987664
No 119
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.78 E-value=6.9e-18 Score=152.59 Aligned_cols=150 Identities=21% Similarity=0.187 Sum_probs=101.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|++|||||||+++|.+..+....++.+ .....+..++..+.+|||||. ..+. ..+..++..+|++
T Consensus 24 ilG~~~~GKStLi~~l~~~~~~~~~~T~~----~~~~~i~~~~~~~~l~D~~G~--~~~~-------~~~~~~~~~ad~i 90 (190)
T cd00879 24 FLGLDNAGKTTLLHMLKDDRLAQHVPTLH----PTSEELTIGNIKFKTFDLGGH--EQAR-------RLWKDYFPEVDGI 90 (190)
T ss_pred EECCCCCCHHHHHHHHhcCCCcccCCccC----cceEEEEECCEEEEEEECCCC--HHHH-------HHHHHHhccCCEE
Confidence 99999999999999999877643222222 223445566789999999994 2222 2234557899999
Q ss_pred EEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHHh--------------cCCCceEEE
Q 015293 196 VVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK--------------FTDVDEVIP 258 (409)
Q Consensus 196 llVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~--------------~~~~~~iv~ 258 (409)
++|+|+++.. .....++...++.. ..+.|+++++||+|+............+.. .....++++
T Consensus 91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (190)
T cd00879 91 VFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFM 170 (190)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEE
Confidence 9999998653 22233444443321 156899999999998753333333333321 011236899
Q ss_pred cccCCCCCHHHHHHHHHhhC
Q 015293 259 VSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 259 iSA~~g~gi~~L~~~L~~~l 278 (409)
|||++|+|+++++++|.+.+
T Consensus 171 ~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 171 CSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred eEecCCCChHHHHHHHHhhC
Confidence 99999999999999998753
No 120
>PTZ00369 Ras-like protein; Provisional
Probab=99.78 E-value=4e-18 Score=154.48 Aligned_cols=154 Identities=19% Similarity=0.190 Sum_probs=99.5
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhh
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 189 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~--~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~ 189 (409)
.++ ++|.+|||||||++++.+..+. .....|..+..... +......+.+|||||. ..+..+. ..++
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~l~-------~~~~ 74 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHFI--DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQ--EEYSAMR-------DQYM 74 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCchhhEEEEEEEECCEEEEEEEEeCCCC--ccchhhH-------HHHh
Confidence 345 9999999999999999987753 22223322222222 3333456889999994 3444332 2347
Q ss_pred cCcceEEEEeeCCCCCC--hHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHH--HHHHHHHhcCCCceEEEcccCCC
Q 015293 190 INADCIVVLVDACKAPE--RIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA--KKLEWYEKFTDVDEVIPVSAKYG 264 (409)
Q Consensus 190 ~~aDvillVvD~~~~~~--~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~--~~~~~~~~~~~~~~iv~iSA~~g 264 (409)
+.+|++++|+|+++... ....++....+.. ..+.|+++|+||+|+.....+. ........ .+ .+++++||++|
T Consensus 75 ~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~-~~-~~~~e~Sak~~ 152 (189)
T PTZ00369 75 RTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKS-FG-IPFLETSAKQR 152 (189)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-hC-CEEEEeeCCCC
Confidence 78999999999987642 2333332222211 1478999999999986432211 11222222 22 37899999999
Q ss_pred CCHHHHHHHHHhhCC
Q 015293 265 HGVEDIRDWILTKLP 279 (409)
Q Consensus 265 ~gi~~L~~~L~~~l~ 279 (409)
.|+++++.+|.+.+.
T Consensus 153 ~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 153 VNVDEAFYELVREIR 167 (189)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987664
No 121
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.78 E-value=5.6e-18 Score=151.61 Aligned_cols=151 Identities=19% Similarity=0.183 Sum_probs=96.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEE--EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~--~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+.+++...+. ..+..|..+.... .+......+.+||||| +..+..+. ..++..+|
T Consensus 6 iiG~~~vGKSsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G--~~~~~~~~-------~~~~~~~d 74 (174)
T cd01871 6 VVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAG--QEDYDRLR-------PLSYPQTD 74 (174)
T ss_pred EECCCCCCHHHHHHHHhcCCCC--CcCCCcceeeeEEEEEECCEEEEEEEEECCC--chhhhhhh-------hhhcCCCC
Confidence 9999999999999999987653 2333333332222 2223336788999999 44433332 23478999
Q ss_pred eEEEEeeCCCCCCh--HHHHHHHHhccCCCCCCEEEEEecCCCCChhh-HH------------HHHHHHHhcCCCceEEE
Q 015293 194 CIVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IA------------KKLEWYEKFTDVDEVIP 258 (409)
Q Consensus 194 villVvD~~~~~~~--~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~-~~------------~~~~~~~~~~~~~~iv~ 258 (409)
++|+|+|++++.+- ....+...+.....+.|+++|+||+|+..... .. .....+....+..++++
T Consensus 75 ~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 154 (174)
T cd01871 75 VFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 154 (174)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEE
Confidence 99999999876422 22223332332225799999999999864221 10 00111222223347899
Q ss_pred cccCCCCCHHHHHHHHHhh
Q 015293 259 VSAKYGHGVEDIRDWILTK 277 (409)
Q Consensus 259 iSA~~g~gi~~L~~~L~~~ 277 (409)
+||++|.|++++++.+.+.
T Consensus 155 ~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 155 CSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred ecccccCCHHHHHHHHHHh
Confidence 9999999999999998764
No 122
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.78 E-value=4.5e-18 Score=152.59 Aligned_cols=153 Identities=20% Similarity=0.193 Sum_probs=101.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEE--eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~--~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.++||||||+.+++...+. ..+..|..+.....+ ......+.+|||+| ++.+..+.. .+++.||
T Consensus 6 v~G~~~vGKTsli~~~~~~~f~--~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G--~~~~~~~~~-------~~~~~a~ 74 (176)
T cd04133 6 TVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVSVDGNTVNLGLWDTAG--QEDYNRLRP-------LSYRGAD 74 (176)
T ss_pred EECCCCCcHHHHHHHHhcCCCC--CCCCCcceeeeEEEEEECCEEEEEEEEECCC--Cccccccch-------hhcCCCc
Confidence 9999999999999999987763 223333323222222 23346789999999 445544433 3478999
Q ss_pred eEEEEeeCCCCCChHH--HHHHHHhccCCCCCCEEEEEecCCCCChhh----------H-HHHHHHHHhcCCCceEEEcc
Q 015293 194 CIVVLVDACKAPERID--EILEEGVGDHKDKLPILLVLNKKDLIKPGE----------I-AKKLEWYEKFTDVDEVIPVS 260 (409)
Q Consensus 194 villVvD~~~~~~~~~--~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~----------~-~~~~~~~~~~~~~~~iv~iS 260 (409)
++|+|+|.++...-.. ..+...++....+.|++||+||+|+.+... + .+....+....+..++++||
T Consensus 75 ~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 154 (176)
T cd04133 75 VFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECS 154 (176)
T ss_pred EEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 9999999987653222 223333333235799999999999964321 1 11122233333444689999
Q ss_pred cCCCCCHHHHHHHHHhhCC
Q 015293 261 AKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 261 A~~g~gi~~L~~~L~~~l~ 279 (409)
|++|.||+++|+.+.+.+.
T Consensus 155 Ak~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 155 SKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred CCcccCHHHHHHHHHHHHh
Confidence 9999999999999998653
No 123
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.78 E-value=2.5e-18 Score=184.00 Aligned_cols=195 Identities=18% Similarity=0.227 Sum_probs=129.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|++|+|||||+++|.+..+. .....+.|.+.....+.+++..+.||||||+ ..+..+. ...+..+|++
T Consensus 295 ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGh--e~F~~m~-------~rga~~aDia 364 (787)
T PRK05306 295 IMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGH--EAFTAMR-------ARGAQVTDIV 364 (787)
T ss_pred EECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCC--ccchhHH-------HhhhhhCCEE
Confidence 9999999999999999987765 3445677777666667777889999999994 4443332 2346789999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChh--hHHHHHHHH----HhcCCCceEEEcccCCCCCHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWY----EKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~--~~~~~~~~~----~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
|+|+|++++...++...+..... .+.|+|||+||+|+.... .+...+... ..+.+..+++++||++|.|+++
T Consensus 365 ILVVdAddGv~~qT~e~i~~a~~--~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~e 442 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAINHAKA--AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDE 442 (787)
T ss_pred EEEEECCCCCCHhHHHHHHHHHh--cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchH
Confidence 99999998887776666666555 679999999999996432 121111111 1122345899999999999999
Q ss_pred HHHHHHhhCCCCCCCCCCccccCchHHHHHHHHHHHHHHh-hcCCCCCceeEEEEEEEEecCCCee
Q 015293 270 IRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFM-QYRNEVPYACQVNVVSYKTRPTAKD 334 (409)
Q Consensus 270 L~~~L~~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~-~~~~eipys~~v~v~~~~~~~~~~~ 334 (409)
|+++|...........+ .+.+.. . .+++ ...+..|..+.+.+..+..+.+..+
T Consensus 443 Lle~I~~~~e~~~l~~~----~~~~~~---g-----~V~es~~dkg~G~v~~v~V~sGtLk~Gd~v 496 (787)
T PRK05306 443 LLEAILLQAEVLELKAN----PDRPAR---G-----TVIEAKLDKGRGPVATVLVQNGTLKVGDIV 496 (787)
T ss_pred HHHhhhhhhhhhhcccC----CCCCcE---E-----EEEEEEEcCCCeEEEEEEEecCeEecCCEE
Confidence 99998753211000000 011111 0 0111 1235567777888888877765443
No 124
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.78 E-value=6.2e-18 Score=148.36 Aligned_cols=149 Identities=19% Similarity=0.299 Sum_probs=96.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEE--Ee--CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~--~~--~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
++|.+|+|||||++++++..+.. ...+....+..... +. .....+.+||||| ++.+..+ ...+++.
T Consensus 5 ~vG~~~~GKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G--~~~~~~~-------~~~~~~~ 74 (162)
T cd04106 5 VVGNGNVGKSSMIQRFVKGIFTK-DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG--QEEFDAI-------TKAYYRG 74 (162)
T ss_pred EECCCCCCHHHHHHHHhcCCCCC-CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCc--hHHHHHh-------HHHHhcC
Confidence 89999999999999999876532 11222222222222 22 3356799999999 4333333 3345789
Q ss_pred cceEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCceEEEcccCCCCCH
Q 015293 192 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 192 aDvillVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~--~~~~~~~~~~~~~~~iv~iSA~~g~gi 267 (409)
+|++++|+|++++. .....++... .....+.|+++|+||+|+.....+ .+... +....+. +++++||++|.|+
T Consensus 75 ~~~~v~v~d~~~~~s~~~l~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~-~~~~~~~-~~~~~Sa~~~~~v 151 (162)
T cd04106 75 AQACILVFSTTDRESFEAIESWKEKV-EAECGDIPMVLVQTKIDLLDQAVITNEEAEA-LAKRLQL-PLFRTSVKDDFNV 151 (162)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHH-HHhCCCCCEEEEEEChhcccccCCCHHHHHH-HHHHcCC-eEEEEECCCCCCH
Confidence 99999999998754 2222222222 222257999999999999753321 12222 2222333 7999999999999
Q ss_pred HHHHHHHHhh
Q 015293 268 EDIRDWILTK 277 (409)
Q Consensus 268 ~~L~~~L~~~ 277 (409)
++++++|.+.
T Consensus 152 ~~l~~~l~~~ 161 (162)
T cd04106 152 TELFEYLAEK 161 (162)
T ss_pred HHHHHHHHHh
Confidence 9999999754
No 125
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.78 E-value=6.4e-18 Score=154.66 Aligned_cols=165 Identities=19% Similarity=0.263 Sum_probs=105.3
Q ss_pred EecCCCChHHHHHHHhCCccee-eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 117 LGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 117 vG~~n~GKSsLln~l~~~~~~~-v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
+|.+|||||||+++++...+.. ..++.+.+.......+......+.|||||| ++.+..+ ...+++.+|++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G--~e~~~~l-------~~~~~~~ad~~ 71 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAG--QEKFGGL-------RDGYYIQGQCA 71 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCC--chhhhhh-------hHHHhcCCCEE
Confidence 6999999999999999765531 122222222222222333457899999999 4444433 33457899999
Q ss_pred EEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHH
Q 015293 196 VVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDW 273 (409)
Q Consensus 196 llVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~ 273 (409)
|+|+|+++..+ ....|+..+ .....+.|+++|+||+|+.......+...+ ....+ .++++|||++|.||.++|.+
T Consensus 72 ilV~D~t~~~S~~~i~~w~~~i-~~~~~~~piilvgNK~Dl~~~~v~~~~~~~-~~~~~-~~~~e~SAk~~~~v~~~F~~ 148 (200)
T smart00176 72 IIMFDVTARVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKDRKVKAKSITF-HRKKN-LQYYDISAKSNYNFEKPFLW 148 (200)
T ss_pred EEEEECCChHHHHHHHHHHHHH-HHhCCCCCEEEEEECcccccccCCHHHHHH-HHHcC-CEEEEEeCCCCCCHHHHHHH
Confidence 99999987652 222333323 322357999999999998532211111222 22222 47899999999999999999
Q ss_pred HHhhCC--------CCCCCCCCccccCc
Q 015293 274 ILTKLP--------LGPAYYPKDIVSEH 293 (409)
Q Consensus 274 L~~~l~--------~~~~~~~~~~~t~~ 293 (409)
|...+. .+++.++++..++.
T Consensus 149 l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 176 (200)
T smart00176 149 LARKLIGDPNLEFVAMPALAPPEVVMDP 176 (200)
T ss_pred HHHHHHhcccceeccCcccCCcccccCh
Confidence 997553 34555666544443
No 126
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.77 E-value=7e-18 Score=156.50 Aligned_cols=151 Identities=19% Similarity=0.309 Sum_probs=99.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|.+|||||||++++++..+... .+ |.. ............+.+|||||. +.+..+.. .++..+|++
T Consensus 5 ivG~~~vGKTSLi~r~~~~~f~~~--~~-Tig-~~~~~~~~~~~~l~iwDt~G~--e~~~~l~~-------~~~~~ad~~ 71 (220)
T cd04126 5 LLGDMNVGKTSLLHRYMERRFKDT--VS-TVG-GAFYLKQWGPYNISIWDTAGR--EQFHGLGS-------MYCRGAAAV 71 (220)
T ss_pred EECCCCCcHHHHHHHHhcCCCCCC--CC-ccc-eEEEEEEeeEEEEEEEeCCCc--ccchhhHH-------HHhccCCEE
Confidence 899999999999999998887422 22 221 111222334578999999994 44444432 347899999
Q ss_pred EEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCC-------------------hhh--HHHHHHHHHhcCC
Q 015293 196 VVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIK-------------------PGE--IAKKLEWYEKFTD 252 (409)
Q Consensus 196 llVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~-------------------~~~--~~~~~~~~~~~~~ 252 (409)
|+|+|+++.. .....++..+.+....+.|+|||+||+|+.. ... ..+...+......
T Consensus 72 IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~ 151 (220)
T cd04126 72 ILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINK 151 (220)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCc
Confidence 9999998764 3333444444332225689999999999864 111 1122222222221
Q ss_pred ------------CceEEEcccCCCCCHHHHHHHHHhhCC
Q 015293 253 ------------VDEVIPVSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 253 ------------~~~iv~iSA~~g~gi~~L~~~L~~~l~ 279 (409)
..++++|||++|.||+++|..+.+.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 152 YKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred cccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 147899999999999999999987653
No 127
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.77 E-value=1.6e-17 Score=176.44 Aligned_cols=150 Identities=17% Similarity=0.254 Sum_probs=107.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEe----CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS----GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~----~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
|+|++|+|||||+++|.+..+.. +..++.|.+.....+. ..+..+.|||||| +..+..+ +..++..
T Consensus 249 IvGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPG--he~F~~m-------r~rg~~~ 318 (742)
T CHL00189 249 ILGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPG--HEAFSSM-------RSRGANV 318 (742)
T ss_pred EECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEEecCCceEEEEEECCc--HHHHHHH-------HHHHHHH
Confidence 99999999999999999877652 3445555543322222 2358899999999 4443332 3345788
Q ss_pred cceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHH-------hcCCCceEEEcccCCC
Q 015293 192 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE-------KFTDVDEVIPVSAKYG 264 (409)
Q Consensus 192 aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~-------~~~~~~~iv~iSA~~g 264 (409)
+|++|+|+|++++...++...+..+.. .+.|+|+|+||+|+.... .......+. .+.+..+++++||++|
T Consensus 319 aDiaILVVDA~dGv~~QT~E~I~~~k~--~~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 319 TDIAILIIAADDGVKPQTIEAINYIQA--ANVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred CCEEEEEEECcCCCChhhHHHHHHHHh--cCceEEEEEECCCccccC-HHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 999999999998876666665555554 679999999999997532 111112111 1233468999999999
Q ss_pred CCHHHHHHHHHhhC
Q 015293 265 HGVEDIRDWILTKL 278 (409)
Q Consensus 265 ~gi~~L~~~L~~~l 278 (409)
.|+++|+++|....
T Consensus 396 ~GIdeLle~I~~l~ 409 (742)
T CHL00189 396 TNIDKLLETILLLA 409 (742)
T ss_pred CCHHHHHHhhhhhh
Confidence 99999999998764
No 128
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.77 E-value=5.3e-18 Score=150.84 Aligned_cols=152 Identities=18% Similarity=0.167 Sum_probs=99.1
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|++|+|||||++++.+..+. ....++..+.....+..++ ..+.+|||||. ..+..++. ..+..+|
T Consensus 5 i~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~~-------~~~~~~~ 73 (174)
T cd04135 5 VVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ--EDYDRLRP-------LSYPMTD 73 (174)
T ss_pred EECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCc--cccccccc-------ccCCCCC
Confidence 8999999999999999988764 3334444433333333333 45789999994 33333322 3467899
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHH-------------HHHHHHhcCCCceEEE
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTDVDEVIP 258 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~-------------~~~~~~~~~~~~~iv~ 258 (409)
++++|+|.+++.. .....+...++....+.|+++|+||+|+.+...... ....+....+..++++
T Consensus 74 ~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 153 (174)
T cd04135 74 VFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVE 153 (174)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEE
Confidence 9999999987642 222223333333236799999999999864322111 1112222234457899
Q ss_pred cccCCCCCHHHHHHHHHhhC
Q 015293 259 VSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 259 iSA~~g~gi~~L~~~L~~~l 278 (409)
+||++|.|++++++.+...+
T Consensus 154 ~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 154 CSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred ecCCcCCCHHHHHHHHHHHh
Confidence 99999999999999987643
No 129
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.77 E-value=8.9e-18 Score=146.81 Aligned_cols=151 Identities=21% Similarity=0.325 Sum_probs=96.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~--~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|+|||||+|++++..+.. ...+.++.......+. .....+.+||||| +..+..+ ....+..+|
T Consensus 5 i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g--~~~~~~~-------~~~~~~~~~ 74 (162)
T cd04123 5 LLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAG--QERYHAL-------GPIYYRDAD 74 (162)
T ss_pred EECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCc--hHHHHHh-------hHHHhccCC
Confidence 89999999999999999887642 2222222232222233 2335689999999 4333333 223467899
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~--~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
++++|+|++++.. ....++.........+.|+++|+||+|+.....+ ....... ...+ .+++++||++|.|+++
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~-~~~~-~~~~~~s~~~~~gi~~ 152 (162)
T cd04123 75 GAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYA-KSVG-AKHFETSAKTGKGIEE 152 (162)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHH-HHcC-CEEEEEeCCCCCCHHH
Confidence 9999999987542 2222222222221246899999999998743221 1122222 2222 4689999999999999
Q ss_pred HHHHHHhhC
Q 015293 270 IRDWILTKL 278 (409)
Q Consensus 270 L~~~L~~~l 278 (409)
++++|.+.+
T Consensus 153 ~~~~l~~~~ 161 (162)
T cd04123 153 LFLSLAKRM 161 (162)
T ss_pred HHHHHHHHh
Confidence 999998754
No 130
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.77 E-value=1.1e-17 Score=150.80 Aligned_cols=154 Identities=16% Similarity=0.172 Sum_probs=99.4
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
.++ ++|.+|||||||++++....+....+ |+.. ....+...+..+.+|||||. ..+.. .+..++..
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~~~~~~---T~~~-~~~~~~~~~~~~~l~D~~G~--~~~~~-------~~~~~~~~ 84 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEVVTTIP---TIGF-NVETVEYKNLKFTMWDVGGQ--DKLRP-------LWRHYYQN 84 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCC---cccc-ceEEEEECCEEEEEEECCCC--HhHHH-------HHHHHhcC
Confidence 345 99999999999999997655532222 2221 12234457789999999994 33222 24455789
Q ss_pred cceEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHHhc---CCCceEEEcccCCCC
Q 015293 192 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKYGH 265 (409)
Q Consensus 192 aDvillVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~---~~~~~iv~iSA~~g~ 265 (409)
+|++|+|+|+++.. .....++.+.+... ..+.|++||+||+|+............+... .....++++||++|.
T Consensus 85 ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~ 164 (182)
T PTZ00133 85 TNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQ 164 (182)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCC
Confidence 99999999998653 22233344443321 1468999999999986532222222222110 011246789999999
Q ss_pred CHHHHHHHHHhhCC
Q 015293 266 GVEDIRDWILTKLP 279 (409)
Q Consensus 266 gi~~L~~~L~~~l~ 279 (409)
|+++++++|.+.+.
T Consensus 165 gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 165 GLYEGLDWLSANIK 178 (182)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987653
No 131
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.77 E-value=8.5e-18 Score=152.53 Aligned_cols=153 Identities=17% Similarity=0.174 Sum_probs=102.2
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecC-CCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHh
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNK-PQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSA 188 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~-~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~ 188 (409)
.++ ++|.++||||||+.++.+..+. .+. +..+.+.....+..++ ..+.+||||| ++.+..+ ...+
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G--~~~~~~l-------~~~~ 75 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGSTE--SPYGYNMGIDYKTTTILLDGRRVKLQLWDTSG--QGRFCTI-------FRSY 75 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCcceeEEEEEEEEECCEEEEEEEEeCCC--cHHHHHH-------HHHH
Confidence 344 9999999999999999986653 222 2223333333333333 6789999999 4443333 3345
Q ss_pred hcCcceEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCC
Q 015293 189 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYG 264 (409)
Q Consensus 189 ~~~aDvillVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g 264 (409)
++.+|++|+|+|++++. .....|+.++ ....++.|+|||+||+|+..... ......+.. ..+ .+++++||++|
T Consensus 76 ~~~ad~illVfD~t~~~Sf~~~~~w~~~i-~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~-~~~-~~~~e~SAk~g 152 (189)
T cd04121 76 SRGAQGIILVYDITNRWSFDGIDRWIKEI-DEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAE-RNG-MTFFEVSPLCN 152 (189)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHH-HHhCCCCCEEEEEECccchhccCCCHHHHHHHHH-HcC-CEEEEecCCCC
Confidence 78999999999998765 3333344333 32236799999999999864221 222222222 223 47999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 015293 265 HGVEDIRDWILTKLP 279 (409)
Q Consensus 265 ~gi~~L~~~L~~~l~ 279 (409)
.||+++|++|.+.+.
T Consensus 153 ~~V~~~F~~l~~~i~ 167 (189)
T cd04121 153 FNITESFTELARIVL 167 (189)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999997664
No 132
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=4.3e-18 Score=149.40 Aligned_cols=156 Identities=23% Similarity=0.296 Sum_probs=113.7
Q ss_pred EEecCCCChHHHHHHHhCCccee-eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|..|||||||+-++...++.. ..++.|...-.....+.....++.+|||+| ++.++++.. -++++|++
T Consensus 10 LLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAG--QERy~slap-------MYyRgA~A 80 (200)
T KOG0092|consen 10 LLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAG--QERYHSLAP-------MYYRGANA 80 (200)
T ss_pred EECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCC--ccccccccc-------ceecCCcE
Confidence 99999999999999999887754 244555544444444444457899999999 667777744 35899999
Q ss_pred EEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 195 IVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 195 illVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
+|+|+|+++.. .....|+.++-+...+++-+.||+||+|+..... ..+... +....++ .++.+||+||.|++++
T Consensus 81 AivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~-yAe~~gl-l~~ETSAKTg~Nv~~i 158 (200)
T KOG0092|consen 81 AIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQA-YAESQGL-LFFETSAKTGENVNEI 158 (200)
T ss_pred EEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHH-HHHhcCC-EEEEEecccccCHHHH
Confidence 99999998765 4445666666555445566677999999987333 222222 3332333 7899999999999999
Q ss_pred HHHHHhhCCCCC
Q 015293 271 RDWILTKLPLGP 282 (409)
Q Consensus 271 ~~~L~~~l~~~~ 282 (409)
|..|.+.++...
T Consensus 159 f~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 159 FQAIAEKLPCSD 170 (200)
T ss_pred HHHHHHhccCcc
Confidence 999999998654
No 133
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.77 E-value=1.1e-17 Score=147.62 Aligned_cols=151 Identities=13% Similarity=0.133 Sum_probs=97.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|+|||||++++++..+.. ...+....+.....+..++ ..+.+|||||. ..+..+ ...++..+|
T Consensus 5 vvG~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~--~~~~~~-------~~~~~~~~~ 74 (161)
T cd04117 5 LIGDSGVGKTCLLCRFTDNEFHS-SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQ--ERYQTI-------TKQYYRRAQ 74 (161)
T ss_pred EECcCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEeCCCc--HhHHhh-------HHHHhcCCc
Confidence 89999999999999999877641 2222222233223333333 57889999994 333333 333578999
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~-~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
++++|+|+++.. +....++.........+.|+++|+||+|+.....+ ......+.+..+ .+++++||++|.|++++
T Consensus 75 ~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~ 153 (161)
T cd04117 75 GIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYG-MDFFETSACTNSNIKES 153 (161)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHH
Confidence 999999998754 22223333222221246899999999998654322 112222223223 47899999999999999
Q ss_pred HHHHHhh
Q 015293 271 RDWILTK 277 (409)
Q Consensus 271 ~~~L~~~ 277 (409)
+.+|.+.
T Consensus 154 f~~l~~~ 160 (161)
T cd04117 154 FTRLTEL 160 (161)
T ss_pred HHHHHhh
Confidence 9999865
No 134
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.77 E-value=7.5e-18 Score=153.06 Aligned_cols=153 Identities=19% Similarity=0.208 Sum_probs=100.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~--~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||++++....+. ..+..|..+..... +......+.+||||| ++.+..+. ..+++.||
T Consensus 8 ~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G--~e~~~~l~-------~~~~~~a~ 76 (191)
T cd01875 8 VVGDGAVGKTCLLICYTTNAFP--KEYIPTVFDNYSAQTAVDGRTVSLNLWDTAG--QEEYDRLR-------TLSYPQTN 76 (191)
T ss_pred EECCCCCCHHHHHHHHHhCCCC--cCCCCceEeeeEEEEEECCEEEEEEEEECCC--chhhhhhh-------hhhccCCC
Confidence 9999999999999999987763 22233332222222 233346789999999 55544443 23478999
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHH-------------HHHHHHHhcCCCceEEE
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTDVDEVIP 258 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~-------------~~~~~~~~~~~~~~iv~ 258 (409)
++|+|+|+++... .....+...+.....+.|++||+||+|+....... .....+....+..++++
T Consensus 77 ~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e 156 (191)
T cd01875 77 VFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLE 156 (191)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEE
Confidence 9999999987652 22222223222222579999999999996432110 01122222233357999
Q ss_pred cccCCCCCHHHHHHHHHhhCC
Q 015293 259 VSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 259 iSA~~g~gi~~L~~~L~~~l~ 279 (409)
+||++|.||+++|.+|.+.+.
T Consensus 157 ~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 157 CSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred eCCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999998664
No 135
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.77 E-value=7.7e-18 Score=153.93 Aligned_cols=153 Identities=18% Similarity=0.211 Sum_probs=98.6
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
.+ ++|.+|||||||++++.+..+.. ...+....+.....+..+ ...+.||||||. ..+..+ ...++.
T Consensus 8 kivvvG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~--~~~~~~-------~~~~~~ 77 (199)
T cd04110 8 KLLIIGDSGVGKSSLLLRFADNTFSG-SYITTIGVDFKIRTVEINGERVKLQIWDTAGQ--ERFRTI-------TSTYYR 77 (199)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CcCccccceeEEEEEEECCEEEEEEEEeCCCc--hhHHHH-------HHHHhC
Confidence 44 99999999999999999877531 111111112222222222 357889999994 333322 334578
Q ss_pred CcceEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCceEEEcccCCCCC
Q 015293 191 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGHG 266 (409)
Q Consensus 191 ~aDvillVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~--~~~~~~~~~~~~~~~iv~iSA~~g~g 266 (409)
.+|++++|+|++++. .....++.. +.......|++||+||+|+.....+ ......... .+ .+++++||++|.|
T Consensus 78 ~a~~iilv~D~~~~~s~~~~~~~~~~-i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~e~Sa~~~~g 154 (199)
T cd04110 78 GTHGVIVVYDVTNGESFVNVKRWLQE-IEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQ-MG-ISLFETSAKENIN 154 (199)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHH-HHHhCCCCCEEEEEECcccccccccCHHHHHHHHHH-cC-CEEEEEECCCCcC
Confidence 899999999998754 222233332 3332357899999999999753222 222222222 23 4799999999999
Q ss_pred HHHHHHHHHhhCC
Q 015293 267 VEDIRDWILTKLP 279 (409)
Q Consensus 267 i~~L~~~L~~~l~ 279 (409)
|++++++|.+.+.
T Consensus 155 i~~lf~~l~~~~~ 167 (199)
T cd04110 155 VEEMFNCITELVL 167 (199)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 136
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.77 E-value=9.1e-18 Score=149.48 Aligned_cols=154 Identities=19% Similarity=0.176 Sum_probs=97.6
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeC--CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~--~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
++ ++|.+|||||||++++.+..+. ..+..|..+.....+.. ....+.+|||||. +.+..+. ...+.
T Consensus 3 ki~iiG~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~-------~~~~~ 71 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQ--EDYDRLR-------PLSYP 71 (175)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccccceEEEEEECCEEEEEEEEeCCCc--hhhhhcc-------ccccC
Confidence 45 9999999999999999987764 22333333322222333 3357899999994 3332221 12468
Q ss_pred CcceEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHH-------------HHHHHHhcCCCce
Q 015293 191 NADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTDVDE 255 (409)
Q Consensus 191 ~aDvillVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~-------------~~~~~~~~~~~~~ 255 (409)
.+|++++|+|+++... .....+...++....+.|+++|+||+|+........ ....+....+..+
T Consensus 72 ~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~ 151 (175)
T cd01870 72 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFG 151 (175)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcE
Confidence 9999999999986532 222222232332225789999999999865322111 0111122223447
Q ss_pred EEEcccCCCCCHHHHHHHHHhhC
Q 015293 256 VIPVSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 256 iv~iSA~~g~gi~~L~~~L~~~l 278 (409)
++++||++|.|+++++++|.+.+
T Consensus 152 ~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 152 YMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred EEEeccccCcCHHHHHHHHHHHh
Confidence 89999999999999999998653
No 137
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.77 E-value=1.2e-17 Score=151.54 Aligned_cols=151 Identities=18% Similarity=0.238 Sum_probs=97.1
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEE-EEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI-LGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~-~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++|.+|||||||++++++..+. ...+.+|..... ...+..++ ..+.+|||||. ..+..+. ...+..+
T Consensus 5 vvG~~~vGKSsLi~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~--~~~~~~~-------~~~~~~~ 74 (193)
T cd04118 5 MLGKESVGKTSLVERYVHHRFL-VGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS--ERYEAMS-------RIYYRGA 74 (193)
T ss_pred EECCCCCCHHHHHHHHHhCCcC-CcCcccceeeEEEEEEEEECCEEEEEEEEECCCc--hhhhhhh-------HhhcCCC
Confidence 9999999999999999987764 223333333222 22233333 45779999994 3333332 2346789
Q ss_pred ceEEEEeeCCCCCChH-HHHHHHHhccCCCCCCEEEEEecCCCCChhh------HHHHHHHHHhcCCCceEEEcccCCCC
Q 015293 193 DCIVVLVDACKAPERI-DEILEEGVGDHKDKLPILLVLNKKDLIKPGE------IAKKLEWYEKFTDVDEVIPVSAKYGH 265 (409)
Q Consensus 193 DvillVvD~~~~~~~~-~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~------~~~~~~~~~~~~~~~~iv~iSA~~g~ 265 (409)
|++++|+|+++..... ...+...+.....+.|+++|+||+|+..... ......+ ....+ .+++++||++|.
T Consensus 75 d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~-~~~~~-~~~~~~Sa~~~~ 152 (193)
T cd04118 75 KAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDF-ADEIK-AQHFETSSKTGQ 152 (193)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHH-HHHcC-CeEEEEeCCCCC
Confidence 9999999998754221 1123333333235789999999999864321 1111122 22122 468999999999
Q ss_pred CHHHHHHHHHhhC
Q 015293 266 GVEDIRDWILTKL 278 (409)
Q Consensus 266 gi~~L~~~L~~~l 278 (409)
|+++|+++|.+.+
T Consensus 153 gv~~l~~~i~~~~ 165 (193)
T cd04118 153 NVDELFQKVAEDF 165 (193)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 138
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.77 E-value=5.4e-18 Score=178.20 Aligned_cols=154 Identities=28% Similarity=0.309 Sum_probs=110.8
Q ss_pred ecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEE
Q 015293 118 GKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVV 197 (409)
Q Consensus 118 G~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvill 197 (409)
|+||||||||+|+|+|.+. .+++.+++|.+...+.+..++.++.+|||||.........+....+.. .....+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~-l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDY-LLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHH-HhhcCCCEEEE
Confidence 8999999999999999875 588999999999888888888899999999964322111222222222 12357999999
Q ss_pred EeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHHhh
Q 015293 198 LVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 277 (409)
Q Consensus 198 VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~~~ 277 (409)
|+|+++... ......+. .. .++|+++|+||+|+.+........+.+.+..+ .+++++||++|+|++++++++.+.
T Consensus 79 VvDat~ler-~l~l~~ql-~~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg-~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 79 VVDASNLER-NLYLTLQL-LE--LGIPMILALNLVDEAEKKGIRIDEEKLEERLG-VPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred EecCCcchh-hHHHHHHH-Hh--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcC-CCEEEEECCCCCCHHHHHHHHHHH
Confidence 999987432 22223332 23 57999999999998654332222333333334 489999999999999999999876
Q ss_pred C
Q 015293 278 L 278 (409)
Q Consensus 278 l 278 (409)
.
T Consensus 154 ~ 154 (591)
T TIGR00437 154 I 154 (591)
T ss_pred h
Confidence 5
No 139
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.77 E-value=1.1e-17 Score=149.21 Aligned_cols=153 Identities=21% Similarity=0.252 Sum_probs=99.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCce-EEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt-~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++|.+|||||||++++++..+. ..+..|. .+.....+..+ ...+.+||||| ++.+..+ ...+++.+
T Consensus 5 ivG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G--~~~~~~~-------~~~~~~~a 73 (170)
T cd04108 5 VVGDLSVGKTCLINRFCKDVFD--KNYKATIGVDFEMERFEILGVPFSLQLWDTAG--QERFKCI-------ASTYYRGA 73 (170)
T ss_pred EECCCCCCHHHHHHHHhcCCCC--CCCCCceeeEEEEEEEEECCEEEEEEEEeCCC--hHHHHhh-------HHHHhcCC
Confidence 9999999999999999988763 2222222 23322223222 35789999999 4443333 33457899
Q ss_pred ceEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhH---HHHHHHHHhcCCCceEEEcccCCCCC
Q 015293 193 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI---AKKLEWYEKFTDVDEVIPVSAKYGHG 266 (409)
Q Consensus 193 DvillVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~---~~~~~~~~~~~~~~~iv~iSA~~g~g 266 (409)
|++++|+|+++.. .....|+....+.. ....|+++|+||+|+.+.... ......+....+ .+++++||++|.|
T Consensus 74 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~g~~ 152 (170)
T cd04108 74 QAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQ-AEYWSVSALSGEN 152 (170)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcC-CeEEEEECCCCCC
Confidence 9999999998743 33334443333321 234679999999998654321 111112222222 3789999999999
Q ss_pred HHHHHHHHHhhCCC
Q 015293 267 VEDIRDWILTKLPL 280 (409)
Q Consensus 267 i~~L~~~L~~~l~~ 280 (409)
++++++.|.+++.+
T Consensus 153 v~~lf~~l~~~~~~ 166 (170)
T cd04108 153 VREFFFRVAALTFE 166 (170)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887643
No 140
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.76 E-value=7e-18 Score=181.42 Aligned_cols=157 Identities=26% Similarity=0.322 Sum_probs=116.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh----hhHhHHHHHHHHHhhcC
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI----HMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~----~~l~~~~~~~~~~~~~~ 191 (409)
++|+||||||||+|+|+|.+. .+++.+|+|.+...+.+..++.++.++||||+..... ..++....... .....
T Consensus 8 LvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~-l~~~~ 85 (772)
T PRK09554 8 LIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY-ILSGD 85 (772)
T ss_pred EECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH-HhccC
Confidence 999999999999999999876 5899999999999999999999999999999754211 12333322221 12358
Q ss_pred cceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHH
Q 015293 192 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 271 (409)
Q Consensus 192 aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~ 271 (409)
+|++++|+|+++..... . +...+.. .++|+++|+||+|+.+........+.+.+..+ .+++++||++|+|+++|+
T Consensus 86 aD~vI~VvDat~ler~l-~-l~~ql~e--~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG-~pVvpiSA~~g~GIdeL~ 160 (772)
T PRK09554 86 ADLLINVVDASNLERNL-Y-LTLQLLE--LGIPCIVALNMLDIAEKQNIRIDIDALSARLG-CPVIPLVSTRGRGIEALK 160 (772)
T ss_pred CCEEEEEecCCcchhhH-H-HHHHHHH--cCCCEEEEEEchhhhhccCcHHHHHHHHHHhC-CCEEEEEeecCCCHHHHH
Confidence 99999999998754332 2 2233344 57999999999998754433333334444334 389999999999999999
Q ss_pred HHHHhhCC
Q 015293 272 DWILTKLP 279 (409)
Q Consensus 272 ~~L~~~l~ 279 (409)
+.+.+..+
T Consensus 161 ~~I~~~~~ 168 (772)
T PRK09554 161 LAIDRHQA 168 (772)
T ss_pred HHHHHhhh
Confidence 99988764
No 141
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.76 E-value=1.1e-17 Score=149.74 Aligned_cols=151 Identities=19% Similarity=0.199 Sum_probs=96.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEe------------CCCeeEEEEeCCCCchhhhhhHhHHHHH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS------------GPEYQMILYDTPGIIEKKIHMLDSMMMK 183 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~------------~~~~~i~liDtpG~~~~~~~~l~~~~~~ 183 (409)
++|.+|||||||++++.+.++.. ...+....+.....+. .....+.|||||| ++.+..+
T Consensus 9 ivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~~~------ 79 (180)
T cd04127 9 ALGDSGVGKTSFLYQYTDNKFNP-KFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAG--QERFRSL------ 79 (180)
T ss_pred EECCCCCCHHHHHHHHhcCCCCc-cCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCC--hHHHHHH------
Confidence 99999999999999999876531 1111111122211111 2236789999999 4433322
Q ss_pred HHHHhhcCcceEEEEeeCCCCCC--hHHHHHHHHhcc-CCCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCceEEE
Q 015293 184 NVRSAGINADCIVVLVDACKAPE--RIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIP 258 (409)
Q Consensus 184 ~~~~~~~~aDvillVvD~~~~~~--~~~~~l~~~l~~-~~~~~p~ilvlNK~Dl~~~~~~--~~~~~~~~~~~~~~~iv~ 258 (409)
...+++.+|++++|+|+++... ....++...... ...+.|+++|+||+|+.....+ .....+... .+ .++++
T Consensus 80 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~e 156 (180)
T cd04127 80 -TTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADK-YG-IPYFE 156 (180)
T ss_pred -HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHH-cC-CeEEE
Confidence 3445789999999999987542 222333222211 1246899999999999643221 122222222 23 37899
Q ss_pred cccCCCCCHHHHHHHHHhhC
Q 015293 259 VSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 259 iSA~~g~gi~~L~~~L~~~l 278 (409)
+||++|.|++++++.|.+.+
T Consensus 157 ~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 157 TSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998654
No 142
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.76 E-value=3.1e-18 Score=160.91 Aligned_cols=155 Identities=28% Similarity=0.295 Sum_probs=114.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCee-EEEEeCCCCchhhhh--hHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQ-MILYDTPGIIEKKIH--MLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~-i~liDtpG~~~~~~~--~l~~~~~~~~~~~~~~a 192 (409)
+||.||+|||||+|+|...+. .|.+++.||..+..+.+.+++.. +.+-|.||++..+.. .+...| ...++.|
T Consensus 201 LVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~F----LrHiER~ 275 (366)
T KOG1489|consen 201 LVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKF----LRHIERC 275 (366)
T ss_pred eecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHH----HHHHHhh
Confidence 999999999999999999987 48999999999999988887765 999999999875432 233333 4456889
Q ss_pred ceEEEEeeCCCCC----ChHHHHHHHHhccC---CCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCC
Q 015293 193 DCIVVLVDACKAP----ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 265 (409)
Q Consensus 193 DvillVvD~~~~~----~~~~~~l~~~l~~~---~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~ 265 (409)
+.++||+|.+.+. ..+...+...+..+ ..++|.++|+||+|+..... ..++.+........++++||++++
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~--~~l~~L~~~lq~~~V~pvsA~~~e 353 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK--NLLSSLAKRLQNPHVVPVSAKSGE 353 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH--HHHHHHHHHcCCCcEEEeeecccc
Confidence 9999999998772 22223333333222 15789999999999963322 222333333333359999999999
Q ss_pred CHHHHHHHHHhh
Q 015293 266 GVEDIRDWILTK 277 (409)
Q Consensus 266 gi~~L~~~L~~~ 277 (409)
|+.+|++.|...
T Consensus 354 gl~~ll~~lr~~ 365 (366)
T KOG1489|consen 354 GLEELLNGLREL 365 (366)
T ss_pred chHHHHHHHhhc
Confidence 999999988653
No 143
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.76 E-value=1.3e-17 Score=149.82 Aligned_cols=150 Identities=16% Similarity=0.113 Sum_probs=98.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~--~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||++++.+..+. ..+..|........+. .....+.+||||| ++.+..+.. .+++.||
T Consensus 6 ~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G--~~~~~~~~~-------~~~~~a~ 74 (178)
T cd04131 6 VVGDVQCGKTALLQVFAKDCYP--ETYVPTVFENYTASFEIDEQRIELSLWDTSG--SPYYDNVRP-------LCYPDSD 74 (178)
T ss_pred EECCCCCCHHHHHHHHHhCcCC--CCcCCceEEEEEEEEEECCEEEEEEEEECCC--chhhhhcch-------hhcCCCC
Confidence 9999999999999999987763 2333333222222223 3346788999999 444443322 3478999
Q ss_pred eEEEEeeCCCCCChHH--HHHHHHhccCCCCCCEEEEEecCCCCChh------------hH-HHHHHHHHhcCCCceEEE
Q 015293 194 CIVVLVDACKAPERID--EILEEGVGDHKDKLPILLVLNKKDLIKPG------------EI-AKKLEWYEKFTDVDEVIP 258 (409)
Q Consensus 194 villVvD~~~~~~~~~--~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~------------~~-~~~~~~~~~~~~~~~iv~ 258 (409)
++|+|+|.+++..-.. ..+...++...++.|+++|+||+|+.... .+ .+....+....+..++++
T Consensus 75 ~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E 154 (178)
T cd04131 75 AVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLE 154 (178)
T ss_pred EEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEE
Confidence 9999999987653221 22333333333679999999999985310 01 111223333334447899
Q ss_pred cccCCCCC-HHHHHHHHHh
Q 015293 259 VSAKYGHG-VEDIRDWILT 276 (409)
Q Consensus 259 iSA~~g~g-i~~L~~~L~~ 276 (409)
|||++|+| |+++|..+..
T Consensus 155 ~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 155 CSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred CccCcCCcCHHHHHHHHHH
Confidence 99999995 9999998876
No 144
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.76 E-value=1.5e-17 Score=147.06 Aligned_cols=153 Identities=19% Similarity=0.224 Sum_probs=98.9
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhh
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 189 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~ 189 (409)
..+ ++|.+|||||||++++.+..+.. ...+..+.+.....+..++ ..+.+|||||. ..+. .....++
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~--~~~~-------~~~~~~~ 77 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQ--ERFR-------SITQSYY 77 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCc--HHHH-------HHHHHHh
Confidence 344 99999999999999998765431 1222223334333344444 56889999994 3322 2233457
Q ss_pred cCcceEEEEeeCCCCCC--hHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCceEEEcccCCCC
Q 015293 190 INADCIVVLVDACKAPE--RIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 265 (409)
Q Consensus 190 ~~aDvillVvD~~~~~~--~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~-~~~~~~~~~~~~~~iv~iSA~~g~ 265 (409)
..+|++++|+|++++.. ....++. .++.. ..+.|+++|+||+|+....++. .....+..... .+++++||++|.
T Consensus 78 ~~~d~~i~v~d~~~~~s~~~~~~~~~-~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~-~~~~~~Sa~~~~ 155 (169)
T cd04114 78 RSANALILTYDITCEESFRCLPEWLR-EIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQD-MYYLETSAKESD 155 (169)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHH-HHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcC-CeEEEeeCCCCC
Confidence 89999999999986532 1223322 22221 1468999999999987543322 22233333223 578999999999
Q ss_pred CHHHHHHHHHhh
Q 015293 266 GVEDIRDWILTK 277 (409)
Q Consensus 266 gi~~L~~~L~~~ 277 (409)
|++++++.|.+.
T Consensus 156 gv~~l~~~i~~~ 167 (169)
T cd04114 156 NVEKLFLDLACR 167 (169)
T ss_pred CHHHHHHHHHHH
Confidence 999999999864
No 145
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.76 E-value=7.9e-18 Score=173.23 Aligned_cols=160 Identities=27% Similarity=0.329 Sum_probs=124.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|.||||||||+|+|+|.+.. |.+.||+|.+...+.+...+.++.++|+||...-...+.++...++... -..+|++
T Consensus 8 lvGNPNvGKTtlFN~LTG~~q~-VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll-~~~~D~i 85 (653)
T COG0370 8 LVGNPNVGKTTLFNALTGANQK-VGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLL-EGKPDLI 85 (653)
T ss_pred EecCCCccHHHHHHHHhccCce-ecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHh-cCCCCEE
Confidence 9999999999999999999875 8999999999999999999999999999998764444555554444432 2567999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~ 275 (409)
+-|+|+++-.... ...++++. -+.|+++++|++|...+..+.-..+.+++..+. |++++||++|.|+++|++.+.
T Consensus 86 vnVvDAtnLeRnL-yltlQLlE---~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv-PVv~tvA~~g~G~~~l~~~i~ 160 (653)
T COG0370 86 VNVVDATNLERNL-YLTLQLLE---LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGV-PVVPTVAKRGEGLEELKRAII 160 (653)
T ss_pred EEEcccchHHHHH-HHHHHHHH---cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCC-CEEEEEeecCCCHHHHHHHHH
Confidence 9999998643332 33344443 589999999999987654433333444444453 899999999999999999999
Q ss_pred hhCCCCC
Q 015293 276 TKLPLGP 282 (409)
Q Consensus 276 ~~l~~~~ 282 (409)
+..+...
T Consensus 161 ~~~~~~~ 167 (653)
T COG0370 161 ELAESKT 167 (653)
T ss_pred Hhccccc
Confidence 8776544
No 146
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.76 E-value=1.3e-17 Score=145.39 Aligned_cols=149 Identities=19% Similarity=0.233 Sum_probs=100.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|++|+|||||++++++..+ ......++.+.....+..+ ...+.+|||||. .....+ ....+..+|
T Consensus 4 i~G~~~~GKTsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~~~-------~~~~~~~~~ 72 (160)
T cd00876 4 VLGAGGVGKSAITIQFVKGTF--VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQ--EEFSAM-------RDLYIRQGD 72 (160)
T ss_pred EECCCCCCHHHHHHHHHhCCC--CcCcCCChhHeEEEEEEECCEEEEEEEEECCCh--HHHHHH-------HHHHHhcCC
Confidence 899999999999999998774 3555556555555444444 467899999994 332222 223467899
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccCC-CCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~~-~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
++++|+|.+++.. ....++........ ...|+++|+||+|+..... ........... + .+++++||++|.|++
T Consensus 73 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~-~~~~~~S~~~~~~i~ 150 (160)
T cd00876 73 GFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEW-G-CPFIETSAKDNINID 150 (160)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHc-C-CcEEEeccCCCCCHH
Confidence 9999999986541 12222222222211 4799999999999975321 12222222222 2 478999999999999
Q ss_pred HHHHHHHhh
Q 015293 269 DIRDWILTK 277 (409)
Q Consensus 269 ~L~~~L~~~ 277 (409)
+++++|.+.
T Consensus 151 ~l~~~l~~~ 159 (160)
T cd00876 151 EVFKLLVRE 159 (160)
T ss_pred HHHHHHHhh
Confidence 999999865
No 147
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.76 E-value=1.5e-17 Score=145.90 Aligned_cols=150 Identities=19% Similarity=0.166 Sum_probs=99.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeC--CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~--~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|+|||||++++++..+. ....+++.+........ ....+.+|||||. ..+.. ....+++.+|
T Consensus 5 ~~G~~~~GKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~--~~~~~-------~~~~~~~~~~ 73 (164)
T cd04139 5 VVGAGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQ--EDYAA-------IRDNYHRSGE 73 (164)
T ss_pred EECCCCCCHHHHHHHHHhCCCc--cccCCcchhhEEEEEEECCEEEEEEEEECCCh--hhhhH-------HHHHHhhcCC
Confidence 8999999999999999987653 34444444433333333 3467899999994 33222 2334578899
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCCh--hhHHHHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKP--GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~--~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
++++|+|++++. .....++....+.. ..+.|+++|+||+|+... ............ .+ .+++++||++|.|++
T Consensus 74 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~gi~ 151 (164)
T cd04139 74 GFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQ-WG-VPYVETSAKTRQNVE 151 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHH-hC-CeEEEeeCCCCCCHH
Confidence 999999987643 12233333333221 257999999999999752 122222222222 22 379999999999999
Q ss_pred HHHHHHHhhC
Q 015293 269 DIRDWILTKL 278 (409)
Q Consensus 269 ~L~~~L~~~l 278 (409)
+|++.|.+.+
T Consensus 152 ~l~~~l~~~~ 161 (164)
T cd04139 152 KAFYDLVREI 161 (164)
T ss_pred HHHHHHHHHH
Confidence 9999998755
No 148
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.76 E-value=4.4e-18 Score=173.25 Aligned_cols=144 Identities=22% Similarity=0.195 Sum_probs=101.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeee------------------------------cCCCceEEEEEEEEeCCCeeEEEEe
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVT------------------------------NKPQTTRHRILGICSGPEYQMILYD 165 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~------------------------------~~~~tt~~~~~~~~~~~~~~i~liD 165 (409)
++|++|+|||||+++|++....+.. ...|+|++.....+..++.++.|||
T Consensus 11 iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i~liD 90 (425)
T PRK12317 11 VIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYFTIVD 90 (425)
T ss_pred EECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeEEEEEE
Confidence 9999999999999999855433211 1578999999888999999999999
Q ss_pred CCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCC--CCChHHHHHHHHhccCCCCCCEEEEEecCCCCChh--hHH
Q 015293 166 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIA 241 (409)
Q Consensus 166 tpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~--~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~--~~~ 241 (409)
|||+. . +...+...+..+|++++|+|+++ +...+..+.+..+... ...|+++|+||+|+.... ...
T Consensus 91 tpG~~--~-------~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 91 CPGHR--D-------FVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CCCcc--c-------chhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccHHHHH
Confidence 99952 2 22233445678999999999998 6555555554444442 224699999999997521 111
Q ss_pred ----HHHHHHHhcC---CCceEEEcccCCCCCHHH
Q 015293 242 ----KKLEWYEKFT---DVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 242 ----~~~~~~~~~~---~~~~iv~iSA~~g~gi~~ 269 (409)
+....+.... ...+++++||++|.|+++
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 1222222211 125799999999999986
No 149
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.76 E-value=1.6e-17 Score=173.94 Aligned_cols=149 Identities=21% Similarity=0.301 Sum_probs=108.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCe-eEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~-~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|++|+|||||+++|.+..+. ....++.|.+.....+.+.+. .+.||||||+ ..+..+. ...+..+|+
T Consensus 92 I~Ghvd~GKTSLl~~l~~~~v~-~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGh--e~F~~~r-------~rga~~aDi 161 (587)
T TIGR00487 92 IMGHVDHGKTSLLDSIRKTKVA-QGEAGGITQHIGAYHVENEDGKMITFLDTPGH--EAFTSMR-------ARGAKVTDI 161 (587)
T ss_pred EECCCCCCHHHHHHHHHhCCcc-cccCCceeecceEEEEEECCCcEEEEEECCCC--cchhhHH-------HhhhccCCE
Confidence 9999999999999999998765 345567777766555665444 8999999994 4444332 234788999
Q ss_pred EEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCCh--hhHHHHHHHH----HhcCCCceEEEcccCCCCCHH
Q 015293 195 IVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWY----EKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 195 illVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~--~~~~~~~~~~----~~~~~~~~iv~iSA~~g~gi~ 268 (409)
+++|+|++++...++...+...+. .+.|+++++||+|+... ..+...+... ..+.+..+++++||++|+|++
T Consensus 162 aILVVda~dgv~~qT~e~i~~~~~--~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~ 239 (587)
T TIGR00487 162 VVLVVAADDGVMPQTIEAISHAKA--ANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGID 239 (587)
T ss_pred EEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChH
Confidence 999999998877766666655554 67999999999999642 2222221111 112223478999999999999
Q ss_pred HHHHHHHh
Q 015293 269 DIRDWILT 276 (409)
Q Consensus 269 ~L~~~L~~ 276 (409)
+|+++|..
T Consensus 240 eLl~~I~~ 247 (587)
T TIGR00487 240 ELLDMILL 247 (587)
T ss_pred HHHHhhhh
Confidence 99999864
No 150
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.76 E-value=1.5e-17 Score=149.95 Aligned_cols=154 Identities=18% Similarity=0.140 Sum_probs=100.9
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEE--eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhh
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 189 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~--~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~ 189 (409)
.++ ++|.++||||||+++++...+. ..+..|..+.....+ ......+.+|||+| ++.+..+. ..++
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f~--~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG--~e~~~~~~-------~~~~ 74 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSG--SPYYDNVR-------PLSY 74 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC--CccCCceeeeeEEEEEECCEEEEEEEEECCC--chhhHhhh-------hhhc
Confidence 345 9999999999999999987764 233333332222222 23346789999999 44444442 2357
Q ss_pred cCcceEEEEeeCCCCCChHH--HHHHHHhccCCCCCCEEEEEecCCCCChh------------hH-HHHHHHHHhcCCCc
Q 015293 190 INADCIVVLVDACKAPERID--EILEEGVGDHKDKLPILLVLNKKDLIKPG------------EI-AKKLEWYEKFTDVD 254 (409)
Q Consensus 190 ~~aDvillVvD~~~~~~~~~--~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~------------~~-~~~~~~~~~~~~~~ 254 (409)
+.||++++|+|+++...-.. ..+...++...++.|++||+||+|+.... .+ .+....+....+..
T Consensus 75 ~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~ 154 (182)
T cd04172 75 PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAA 154 (182)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCC
Confidence 89999999999987643221 22333333333679999999999985310 01 11123333333444
Q ss_pred eEEEcccCCCCC-HHHHHHHHHhh
Q 015293 255 EVIPVSAKYGHG-VEDIRDWILTK 277 (409)
Q Consensus 255 ~iv~iSA~~g~g-i~~L~~~L~~~ 277 (409)
++++|||++|.| |+++|..+...
T Consensus 155 ~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 155 TYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred EEEECCcCCCCCCHHHHHHHHHHH
Confidence 799999999998 99999988763
No 151
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.76 E-value=7.6e-18 Score=140.38 Aligned_cols=113 Identities=37% Similarity=0.524 Sum_probs=89.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
|+|.||+|||||+|+|++.+.+.++..+++|++.....+...+..+.|+||||+...............+...+..+|++
T Consensus 4 iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~i 83 (116)
T PF01926_consen 4 IIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLI 83 (116)
T ss_dssp EEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEE
T ss_pred EECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEE
Confidence 89999999999999999988888999999999987777788889999999999865332222112444566667899999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEec
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 231 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK 231 (409)
++|+|+.++.......+.+.++ .++|+++|+||
T Consensus 84 i~vv~~~~~~~~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 84 IYVVDASNPITEDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp EEEEETTSHSHHHHHHHHHHHH---TTSEEEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHh---cCCCEEEEEcC
Confidence 9999987744445555655553 67999999998
No 152
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.76 E-value=1.5e-17 Score=148.28 Aligned_cols=149 Identities=19% Similarity=0.203 Sum_probs=98.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|+|||||++++.+..+. ..+..|+.+.....+..++ ..+.+|||||. ..+..+. ..+++.+|
T Consensus 5 i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~-------~~~~~~a~ 73 (173)
T cd04130 5 LVGDGAVGKTSLIVSYTTNGYP--TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQ--DEFDKLR-------PLCYPDTD 73 (173)
T ss_pred EECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEECCCC--hhhcccc-------ccccCCCc
Confidence 8999999999999999887653 4455555544333333333 57889999994 3333332 23478999
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhhH------------H-HHHHHHHhcCCCceEEE
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI------------A-KKLEWYEKFTDVDEVIP 258 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~------------~-~~~~~~~~~~~~~~iv~ 258 (409)
++++|+|++++.. .....+...+.....+.|+++|+||+|+...... . .....+....+..++++
T Consensus 74 ~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e 153 (173)
T cd04130 74 VFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIE 153 (173)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEE
Confidence 9999999987642 2222233333332256899999999998643210 0 11112222334458999
Q ss_pred cccCCCCCHHHHHHHHH
Q 015293 259 VSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 259 iSA~~g~gi~~L~~~L~ 275 (409)
+||++|.|+++|++.+.
T Consensus 154 ~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 154 CSALTQKNLKEVFDTAI 170 (173)
T ss_pred EeCCCCCCHHHHHHHHH
Confidence 99999999999998875
No 153
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.76 E-value=1.8e-17 Score=147.01 Aligned_cols=151 Identities=17% Similarity=0.210 Sum_probs=98.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeC--CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~--~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.||||||||++++.+..+. .....|+.+.....+.. ....+.+|||||. ..+..+.. ..+..+|
T Consensus 6 liG~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~~-------~~~~~~~ 74 (168)
T cd04177 6 VLGAGGVGKSALTVQFVQNVFI--ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGT--EQFTAMRE-------LYIKSGQ 74 (168)
T ss_pred EECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEeCCCc--ccchhhhH-------HHHhhCC
Confidence 9999999999999999977753 33334443333333333 3367889999994 34443332 3367899
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhcc-CCCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~~-~~~~~p~ilvlNK~Dl~~~~~~--~~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
++++|+|.+++. .....+.....+. ...+.|+++++||+|+...... ..... +....+..+++++||++|.|++
T Consensus 75 ~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~-~~~~~~~~~~~~~SA~~~~~i~ 153 (168)
T cd04177 75 GFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVS-LSQQWGNVPFYETSARKRTNVD 153 (168)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHH-HHHHcCCceEEEeeCCCCCCHH
Confidence 999999998753 2222222222111 1257999999999998653321 11122 2222334579999999999999
Q ss_pred HHHHHHHhhC
Q 015293 269 DIRDWILTKL 278 (409)
Q Consensus 269 ~L~~~L~~~l 278 (409)
+++++|...+
T Consensus 154 ~~f~~i~~~~ 163 (168)
T cd04177 154 EVFIDLVRQI 163 (168)
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 154
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.76 E-value=1.1e-17 Score=148.86 Aligned_cols=153 Identities=16% Similarity=0.146 Sum_probs=97.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEE-EEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH-RILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~-~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++|.+|||||||++++++..+. +..+.+|+.. .....+..++ ..+.+|||+|. ..+..+ ...++..|
T Consensus 9 ~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~--~~~~~~-------~~~~~~~~ 78 (169)
T cd01892 9 VLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGED--EVAILL-------NDAELAAC 78 (169)
T ss_pred EECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCc--cccccc-------chhhhhcC
Confidence 9999999999999999998764 2334444332 2222233333 56889999993 333322 22346899
Q ss_pred ceEEEEeeCCCCCChHH-HHHHHHhccCCCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 193 DCIVVLVDACKAPERID-EILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 193 DvillVvD~~~~~~~~~-~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~-~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
|++++|+|++++..... ..+...+.. ..+.|+++|+||+|+...... ......+....+...++++||++|.|++++
T Consensus 79 d~~llv~d~~~~~s~~~~~~~~~~~~~-~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 157 (169)
T cd01892 79 DVACLVYDSSDPKSFSYCAEVYKKYFM-LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNEL 157 (169)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHhcc-CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHH
Confidence 99999999987532111 122222222 147899999999998643221 011122223233334689999999999999
Q ss_pred HHHHHhhCC
Q 015293 271 RDWILTKLP 279 (409)
Q Consensus 271 ~~~L~~~l~ 279 (409)
++.|.+.+.
T Consensus 158 f~~l~~~~~ 166 (169)
T cd01892 158 FTKLATAAQ 166 (169)
T ss_pred HHHHHHHhh
Confidence 999988764
No 155
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.76 E-value=1.7e-17 Score=155.52 Aligned_cols=153 Identities=30% Similarity=0.389 Sum_probs=111.1
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|.||+|||||+|+|++.... +...+++|.+...+.+..++.++.+|||||+....... ..+.......++.+|++
T Consensus 5 lvG~~~~GKStLl~~Ltg~~~~-v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~--~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 5 LVGFPSVGKSTLLSKLTNTKSE-VAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADG--KGRGRQVIAVARTADLI 81 (233)
T ss_pred EECCCCCCHHHHHHHHHCCCcc-ccCCCCccccceEEEEEECCeEEEEEECCCcccccccc--hhHHHHHHHhhccCCEE
Confidence 8999999999999999998743 67889999988888888889999999999975422111 12334455678999999
Q ss_pred EEEeeCCCCCChHHHHHHHHh-----------------------------------------------------------
Q 015293 196 VVLVDACKAPERIDEILEEGV----------------------------------------------------------- 216 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l----------------------------------------------------------- 216 (409)
++|+|+++..... ..+.+.+
T Consensus 82 l~V~D~t~~~~~~-~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~ 160 (233)
T cd01896 82 LMVLDATKPEGHR-EILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRED 160 (233)
T ss_pred EEEecCCcchhHH-HHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccC
Confidence 9999987643211 1111111
Q ss_pred ----------ccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHHhhCC
Q 015293 217 ----------GDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 217 ----------~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~~~l~ 279 (409)
......+|+++|+||+|+....+... +.. ..+++++||++|.|+++|++.|.+.+.
T Consensus 161 ~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~----~~~---~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 161 ITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL----LAR---QPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHH----Hhc---CCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 10013369999999999987655442 222 235799999999999999999988663
No 156
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.75 E-value=2e-17 Score=173.92 Aligned_cols=194 Identities=26% Similarity=0.284 Sum_probs=123.5
Q ss_pred EEEecCCCChHHHHHHHhCCccee--------eec------CCCceEEEEEEEEeC-----CCeeEEEEeCCCCchhhhh
Q 015293 115 SVLGKPNVGKSTLANQMIGQKLSI--------VTN------KPQTTRHRILGICSG-----PEYQMILYDTPGIIEKKIH 175 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~~~~~~--------v~~------~~~tt~~~~~~~~~~-----~~~~i~liDtpG~~~~~~~ 175 (409)
+++|++|+|||||+++|+.....+ +.+ ..|.|.......+.+ ....+.||||||+.+
T Consensus 7 ~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d---- 82 (595)
T TIGR01393 7 SIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD---- 82 (595)
T ss_pred EEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH----
Confidence 399999999999999998653221 111 125555543333322 237899999999643
Q ss_pred hHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCC--
Q 015293 176 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV-- 253 (409)
Q Consensus 176 ~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~-- 253 (409)
+...+..++..||++|+|+|++++.+.++...+..... .+.|+++|+||+|+..... ......+....+.
T Consensus 83 -----F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--~~ipiIiViNKiDl~~~~~-~~~~~el~~~lg~~~ 154 (595)
T TIGR01393 83 -----FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--NDLEIIPVINKIDLPSADP-ERVKKEIEEVIGLDA 154 (595)
T ss_pred -----HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--cCCCEEEEEECcCCCccCH-HHHHHHHHHHhCCCc
Confidence 22334556889999999999998876655433333233 5789999999999864321 1122222222222
Q ss_pred ceEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCccccCchHHHHHHHHHHHHHHhh-cCCCCCceeEEEEEEEEecCCC
Q 015293 254 DEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQ-YRNEVPYACQVNVVSYKTRPTA 332 (409)
Q Consensus 254 ~~iv~iSA~~g~gi~~L~~~L~~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~-~~~eipys~~v~v~~~~~~~~~ 332 (409)
.+++++||++|.|+++|+++|.+.++..... .+.|.+.. +++. +.+..|..+.+.+..+..+.+.
T Consensus 155 ~~vi~vSAktG~GI~~Lle~I~~~lp~p~~~------~~~pl~~~--------V~~~~~d~~~G~v~~~rV~sG~lk~Gd 220 (595)
T TIGR01393 155 SEAILASAKTGIGIEEILEAIVKRVPPPKGD------PDAPLKAL--------IFDSHYDNYRGVVALVRVFEGTIKPGD 220 (595)
T ss_pred ceEEEeeccCCCCHHHHHHHHHHhCCCCCCC------CCCCeEEE--------EEEEEEeCCCcEEEEEEEECCEEecCC
Confidence 3589999999999999999999988743211 12222211 1121 2456777788888888777654
Q ss_pred ee
Q 015293 333 KD 334 (409)
Q Consensus 333 ~~ 334 (409)
.+
T Consensus 221 ~v 222 (595)
T TIGR01393 221 KI 222 (595)
T ss_pred EE
Confidence 44
No 157
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.75 E-value=3.4e-17 Score=156.50 Aligned_cols=110 Identities=19% Similarity=0.214 Sum_probs=86.6
Q ss_pred EEecCCCChHHHHHHHhCCcc-----eeee------------cCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHh
Q 015293 116 VLGKPNVGKSTLANQMIGQKL-----SIVT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLD 178 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~-----~~v~------------~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~ 178 (409)
++|++|+|||||+++|+.... ..++ ...+.|.+.....+.+++.++.|+||||+.+
T Consensus 4 ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d------- 76 (270)
T cd01886 4 IIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD------- 76 (270)
T ss_pred EEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH-------
Confidence 899999999999999974211 1111 2346677777777888999999999999643
Q ss_pred HHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 179 SMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 179 ~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
+...+..+++.+|++++|+|+..+....+..++..+.. .++|+++++||+|+..
T Consensus 77 --f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~--~~~p~ivviNK~D~~~ 130 (270)
T cd01886 77 --FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADR--YNVPRIAFVNKMDRTG 130 (270)
T ss_pred --HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 33456677899999999999999888877777777665 6799999999999864
No 158
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.75 E-value=3.3e-17 Score=142.14 Aligned_cols=149 Identities=19% Similarity=0.272 Sum_probs=97.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|++|||||||+|+|.+..+.. ...|...... ..+..++..+.+|||||. ..+. ..+..++..+|++
T Consensus 4 i~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~--~~~~~~~~~~~~~D~~g~--~~~~-------~~~~~~~~~~d~i 71 (159)
T cd04159 4 LVGLQNSGKTTLVNVIAGGQFSE-DTIPTVGFNM--RKVTKGNVTLKVWDLGGQ--PRFR-------SMWERYCRGVNAI 71 (159)
T ss_pred EEcCCCCCHHHHHHHHccCCCCc-CccCCCCcce--EEEEECCEEEEEEECCCC--HhHH-------HHHHHHHhcCCEE
Confidence 89999999999999999987642 2222222211 223445688999999994 2222 2234457899999
Q ss_pred EEEeeCCCCCC--hHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCceEEEcccCCCCCHHH
Q 015293 196 VVLVDACKAPE--RIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 196 llVvD~~~~~~--~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~---~~~~~~iv~iSA~~g~gi~~ 269 (409)
++|+|+++... ....++...+... ..++|+++|+||+|+............+.. .....+++++||++|.|+++
T Consensus 72 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 151 (159)
T cd04159 72 VYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDI 151 (159)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHH
Confidence 99999986432 1223333333221 146899999999998765433333322211 11224789999999999999
Q ss_pred HHHHHHh
Q 015293 270 IRDWILT 276 (409)
Q Consensus 270 L~~~L~~ 276 (409)
++++|.+
T Consensus 152 l~~~l~~ 158 (159)
T cd04159 152 VLDWLIK 158 (159)
T ss_pred HHHHHhh
Confidence 9999875
No 159
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.75 E-value=4.2e-17 Score=158.84 Aligned_cols=166 Identities=20% Similarity=0.243 Sum_probs=114.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeC------------------------CCeeEEEEeCCCCch
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG------------------------PEYQMILYDTPGIIE 171 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~------------------------~~~~i~liDtpG~~~ 171 (409)
++|.||||||||+|+|++... .++++|+||.++..+.... ...++.+|||||+..
T Consensus 3 ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv~ 81 (318)
T cd01899 3 LVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLVP 81 (318)
T ss_pred EECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCCC
Confidence 799999999999999999875 5799999998887765432 235799999999864
Q ss_pred hhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCC------------ChHH------HHHH--------------------
Q 015293 172 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP------------ERID------EILE-------------------- 213 (409)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~------------~~~~------~~l~-------------------- 213 (409)
.... ...+.......++.||++++|+|++... .+.. .++.
T Consensus 82 ga~~--~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~ 159 (318)
T cd01899 82 GAHE--GKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADA 159 (318)
T ss_pred Cccc--hhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3211 1223344566789999999999997410 0000 0000
Q ss_pred ------------------------HHhcc----------------------CCCCCCEEEEEecCCCCChhhHHHHHHHH
Q 015293 214 ------------------------EGVGD----------------------HKDKLPILLVLNKKDLIKPGEIAKKLEWY 247 (409)
Q Consensus 214 ------------------------~~l~~----------------------~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~ 247 (409)
..+.. +...+|+|+|+||+|+........ .+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~---~l 236 (318)
T cd01899 160 EKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNIS---KL 236 (318)
T ss_pred CCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHH---HH
Confidence 00000 013579999999999865444332 22
Q ss_pred HhcCCCceEEEcccCCCCCHHHHHH-HHHhhCCCCCCCCCC
Q 015293 248 EKFTDVDEVIPVSAKYGHGVEDIRD-WILTKLPLGPAYYPK 287 (409)
Q Consensus 248 ~~~~~~~~iv~iSA~~g~gi~~L~~-~L~~~l~~~~~~~~~ 287 (409)
.....+.+++++||+.+.|+++|.+ .+.+++|++++.-..
T Consensus 237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~~ 277 (318)
T cd01899 237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEIT 277 (318)
T ss_pred HhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCceec
Confidence 2223456899999999999999998 699999988765433
No 160
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.75 E-value=2.3e-17 Score=155.88 Aligned_cols=152 Identities=18% Similarity=0.240 Sum_probs=100.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||++++++..+. ..+.+|+.+.....+..++ ..+.||||+|. ..+..+. ..++..+|
T Consensus 5 vlG~~gvGKTSLi~r~~~~~f~--~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~--~~~~~~~-------~~~~~~ad 73 (247)
T cd04143 5 VLGASKVGKTAIVSRFLGGRFE--EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGN--HPFPAMR-------RLSILTGD 73 (247)
T ss_pred EECcCCCCHHHHHHHHHcCCCC--CCCCCChhHhEEEEEEECCEEEEEEEEECCCC--hhhhHHH-------HHHhccCC
Confidence 8999999999999999987764 2344444444433444444 67889999994 3333332 22367899
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhc---------cCCCCCCEEEEEecCCCCChh--hHHHHHHHHHhcCCCceEEEcc
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVG---------DHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVS 260 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~---------~~~~~~p~ilvlNK~Dl~~~~--~~~~~~~~~~~~~~~~~iv~iS 260 (409)
++|+|+|+++.. +....++.++.. ....+.|+|+|+||+|+.... ...+....+... ...+++++|
T Consensus 74 ~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~-~~~~~~evS 152 (247)
T cd04143 74 VFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD-ENCAYFEVS 152 (247)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc-CCCEEEEEe
Confidence 999999998753 222222222211 011468999999999996422 222223333221 234789999
Q ss_pred cCCCCCHHHHHHHHHhhCC
Q 015293 261 AKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 261 A~~g~gi~~L~~~L~~~l~ 279 (409)
|++|.|+++|+++|...+.
T Consensus 153 Aktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 153 AKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred CCCCCCHHHHHHHHHHHhc
Confidence 9999999999999998663
No 161
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.75 E-value=3.9e-17 Score=153.31 Aligned_cols=154 Identities=21% Similarity=0.230 Sum_probs=110.8
Q ss_pred EEecCCCChHHHHHHHhCCcceee-----e------------cCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV-----T------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLD 178 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v-----~------------~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~ 178 (409)
++|++|+|||||+++|+.....+. . ...+.|.......+.+++.++.+|||||+.+
T Consensus 4 i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~------- 76 (237)
T cd04168 4 ILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMD------- 76 (237)
T ss_pred EEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccc-------
Confidence 899999999999999986432211 1 1122334445556778889999999999643
Q ss_pred HHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh---HHHHHHHHH-------
Q 015293 179 SMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYE------- 248 (409)
Q Consensus 179 ~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~---~~~~~~~~~------- 248 (409)
+...+..+++.+|++++|+|++++.......++..+.. .++|+++++||+|+...+. +..+.+.+.
T Consensus 77 --f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~--~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~ 152 (237)
T cd04168 77 --FIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRK--LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQ 152 (237)
T ss_pred --hHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEE
Confidence 23345567889999999999999887777777776665 6799999999999874221 111111110
Q ss_pred -------------------------------h---------------------cCCCceEEEcccCCCCCHHHHHHHHHh
Q 015293 249 -------------------------------K---------------------FTDVDEVIPVSAKYGHGVEDIRDWILT 276 (409)
Q Consensus 249 -------------------------------~---------------------~~~~~~iv~iSA~~g~gi~~L~~~L~~ 276 (409)
+ ...+.|+++.||.++.|+..|++.|..
T Consensus 153 ~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~ 232 (237)
T cd04168 153 KVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITK 232 (237)
T ss_pred CCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHH
Confidence 0 123568999999999999999999999
Q ss_pred hCCC
Q 015293 277 KLPL 280 (409)
Q Consensus 277 ~l~~ 280 (409)
++|.
T Consensus 233 ~~p~ 236 (237)
T cd04168 233 LFPT 236 (237)
T ss_pred hcCC
Confidence 9873
No 162
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.75 E-value=7.3e-18 Score=159.08 Aligned_cols=153 Identities=31% Similarity=0.423 Sum_probs=117.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
+||.|++|||||+|+|++.+.. +.+++.||..++.+++.++|.+|.++|+||+......... .-+++.+.++.||++
T Consensus 68 lVGfPsvGKStLL~~LTnt~se-va~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~g--rG~~vlsv~R~ADlI 144 (365)
T COG1163 68 LVGFPSVGKSTLLNKLTNTKSE-VADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRG--RGRQVLSVARNADLI 144 (365)
T ss_pred EEcCCCccHHHHHHHHhCCCcc-ccccCceecccccceEeecCceEEEEcCcccccCcccCCC--CcceeeeeeccCCEE
Confidence 9999999999999999999865 7899999999999999999999999999999874433221 113466778999999
Q ss_pred EEEeeCCCCCChHH------------------------------------------------------------------
Q 015293 196 VVLVDACKAPERID------------------------------------------------------------------ 209 (409)
Q Consensus 196 llVvD~~~~~~~~~------------------------------------------------------------------ 209 (409)
++|+|+.......+
T Consensus 145 iiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dv 224 (365)
T COG1163 145 IIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDV 224 (365)
T ss_pred EEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCC
Confidence 99999986542110
Q ss_pred --HHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHHhhC
Q 015293 210 --EILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 210 --~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~~~l 278 (409)
..+...+......+|.++|+||+|+....+....... .+.+++||..+.|+++|.+.|.+.+
T Consensus 225 TlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~-------~~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 225 TLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARK-------PNSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred cHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhc-------cceEEEecccCCCHHHHHHHHHHhh
Confidence 0111111111135899999999999985554433322 2679999999999999999999877
No 163
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.75 E-value=4.6e-17 Score=144.63 Aligned_cols=148 Identities=22% Similarity=0.340 Sum_probs=98.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|++|||||||+++|.+.......++.+.+. ..+...+..+.+|||||.. .. ...+...++.+|++
T Consensus 19 i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~----~~i~~~~~~~~~~D~~G~~--~~-------~~~~~~~~~~~~~i 85 (173)
T cd04155 19 ILGLDNAGKTTILKQLASEDISHITPTQGFNI----KTVQSDGFKLNVWDIGGQR--AI-------RPYWRNYFENTDCL 85 (173)
T ss_pred EEccCCCCHHHHHHHHhcCCCcccCCCCCcce----EEEEECCEEEEEEECCCCH--HH-------HHHHHHHhcCCCEE
Confidence 99999999999999999976543334334322 2334457889999999942 21 12234456899999
Q ss_pred EEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHHhc---CCCceEEEcccCCCCCHHH
Q 015293 196 VVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 196 llVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~---~~~~~iv~iSA~~g~gi~~ 269 (409)
++|+|++... .....++...+... ..++|+++++||+|+............+... ....+++++||++|+|+++
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~ 165 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQE 165 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHH
Confidence 9999998643 12222333332221 1468999999999997654444333332211 1123578999999999999
Q ss_pred HHHHHHh
Q 015293 270 IRDWILT 276 (409)
Q Consensus 270 L~~~L~~ 276 (409)
++++|.+
T Consensus 166 ~~~~l~~ 172 (173)
T cd04155 166 GMNWVCK 172 (173)
T ss_pred HHHHHhc
Confidence 9999975
No 164
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.75 E-value=4.3e-17 Score=144.74 Aligned_cols=148 Identities=24% Similarity=0.282 Sum_probs=99.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|.+|||||||+++|.+.......++.+.+ ...+..++..+.+|||||. ..+. ..+..++..||++
T Consensus 4 ~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~----~~~~~~~~~~~~i~D~~G~--~~~~-------~~~~~~~~~a~~i 70 (167)
T cd04161 4 TVGLDNAGKTTLVSALQGEIPKKVAPTVGFT----PTKLRLDKYEVCIFDLGGG--ANFR-------GIWVNYYAEAHGL 70 (167)
T ss_pred EECCCCCCHHHHHHHHhCCCCccccCcccce----EEEEEECCEEEEEEECCCc--HHHH-------HHHHHHHcCCCEE
Confidence 8999999999999999987332233333333 2234456789999999994 3322 2245668899999
Q ss_pred EEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHH--Hh----cCCCceEEEcccCCC--
Q 015293 196 VVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWY--EK----FTDVDEVIPVSAKYG-- 264 (409)
Q Consensus 196 llVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~--~~----~~~~~~iv~iSA~~g-- 264 (409)
++|+|+++.. .....++...++.. ..++|+++|+||+|+............+ .. ......++++||++|
T Consensus 71 i~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~ 150 (167)
T cd04161 71 VFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLG 150 (167)
T ss_pred EEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCC
Confidence 9999998764 22233444433321 1478999999999997654333322221 11 112246888999998
Q ss_pred ----CCHHHHHHHHHh
Q 015293 265 ----HGVEDIRDWILT 276 (409)
Q Consensus 265 ----~gi~~L~~~L~~ 276 (409)
.|+.+-++||.+
T Consensus 151 ~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 151 KKIDPSIVEGLRWLLA 166 (167)
T ss_pred CccccCHHHHHHHHhc
Confidence 899999999964
No 165
>PLN03110 Rab GTPase; Provisional
Probab=99.75 E-value=2.2e-17 Score=152.96 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=100.7
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
++ ++|.+|||||||+++|++..+.. ...+....+.....+..+ ...+.||||||. ..+..+ ...+++
T Consensus 14 Ki~ivG~~~vGKStLi~~l~~~~~~~-~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~~~~ 83 (216)
T PLN03110 14 KIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ--ERYRAI-------TSAYYR 83 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEECCEEEEEEEEECCCc--HHHHHH-------HHHHhC
Confidence 44 99999999999999999887642 222222233333333333 358899999993 333222 344578
Q ss_pred CcceEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCceEEEcccCCCCCH
Q 015293 191 NADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 191 ~aDvillVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~-~~~~~~~~~~~~~~iv~iSA~~g~gi 267 (409)
.+|++|+|+|+++... ....|+.........+.|+++|+||+|+.....+. .....+....+ .+++++||++|.|+
T Consensus 84 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~-~~~~e~SA~~g~~v 162 (216)
T PLN03110 84 GAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEG-LSFLETSALEATNV 162 (216)
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 9999999999986542 22233322222212578999999999986432221 12222222223 48999999999999
Q ss_pred HHHHHHHHhhCC
Q 015293 268 EDIRDWILTKLP 279 (409)
Q Consensus 268 ~~L~~~L~~~l~ 279 (409)
++++++|...+.
T Consensus 163 ~~lf~~l~~~i~ 174 (216)
T PLN03110 163 EKAFQTILLEIY 174 (216)
T ss_pred HHHHHHHHHHHH
Confidence 999999987663
No 166
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.75 E-value=2.6e-17 Score=173.52 Aligned_cols=154 Identities=17% Similarity=0.174 Sum_probs=112.4
Q ss_pred EEecCCCChHHHHHHHhCCcce--eeecCCCceEEEEEEEEeC-CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~--~v~~~~~tt~~~~~~~~~~-~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++|++|+|||||+++|+|.+.. ......+.|.+.....+.. ++..+.||||||+ +. +...+...+..+
T Consensus 5 ~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh--e~-------fi~~m~~g~~~~ 75 (614)
T PRK10512 5 TAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH--EK-------FLSNMLAGVGGI 75 (614)
T ss_pred EECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH--HH-------HHHHHHHHhhcC
Confidence 8999999999999999986432 1233457777765555543 4567899999994 32 445566678899
Q ss_pred ceEEEEeeCCCCCChHHHHHHHHhccCCCCCC-EEEEEecCCCCChhhHHHHHHHHH----hcC-CCceEEEcccCCCCC
Q 015293 193 DCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKKLEWYE----KFT-DVDEVIPVSAKYGHG 266 (409)
Q Consensus 193 DvillVvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilvlNK~Dl~~~~~~~~~~~~~~----~~~-~~~~iv~iSA~~g~g 266 (409)
|++++|+|+..+...++.+.+..+.. .+.| +++|+||+|+.+..........+. ... ...+++++||++|.|
T Consensus 76 D~~lLVVda~eg~~~qT~ehl~il~~--lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g 153 (614)
T PRK10512 76 DHALLVVACDDGVMAQTREHLAILQL--TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG 153 (614)
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence 99999999999887777777766655 4566 579999999986544333222222 211 235899999999999
Q ss_pred HHHHHHHHHhhCCC
Q 015293 267 VEDIRDWILTKLPL 280 (409)
Q Consensus 267 i~~L~~~L~~~l~~ 280 (409)
+++|+++|.+...+
T Consensus 154 I~~L~~~L~~~~~~ 167 (614)
T PRK10512 154 IDALREHLLQLPER 167 (614)
T ss_pred CHHHHHHHHHhhcc
Confidence 99999999876543
No 167
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.75 E-value=2.5e-17 Score=172.97 Aligned_cols=154 Identities=21% Similarity=0.291 Sum_probs=114.4
Q ss_pred EEecCCCChHHHHHHHhCCcce--eeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~--~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|++|+|||||+++|+|.... ......+.|.+.....+..++..+.+||||| ++. +...+...+..+|
T Consensus 5 iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPG--he~-------f~~~~~~g~~~aD 75 (581)
T TIGR00475 5 TAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPG--HEK-------FISNAIAGGGGID 75 (581)
T ss_pred EECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCC--HHH-------HHHHHHhhhccCC
Confidence 8999999999999999985422 1233567788877777777778999999999 332 3455666788999
Q ss_pred eEEEEeeCCCCCChHHHHHHHHhccCCCCCC-EEEEEecCCCCChhhHHHH----HHHHHhcC--CCceEEEcccCCCCC
Q 015293 194 CIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKK----LEWYEKFT--DVDEVIPVSAKYGHG 266 (409)
Q Consensus 194 villVvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilvlNK~Dl~~~~~~~~~----~~~~~~~~--~~~~iv~iSA~~g~g 266 (409)
++++|+|++++...++...+..+.. .+.| +++|+||+|+.+....... ...+.... ...+++++||++|.|
T Consensus 76 ~aILVVDa~~G~~~qT~ehl~il~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~G 153 (581)
T TIGR00475 76 AALLVVDADEGVMTQTGEHLAVLDL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQG 153 (581)
T ss_pred EEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCC
Confidence 9999999998876666555555554 5677 9999999999875543222 22222211 135899999999999
Q ss_pred HHHHHHHHHhhCCC
Q 015293 267 VEDIRDWILTKLPL 280 (409)
Q Consensus 267 i~~L~~~L~~~l~~ 280 (409)
++++++.|.+.+..
T Consensus 154 I~eL~~~L~~l~~~ 167 (581)
T TIGR00475 154 IGELKKELKNLLES 167 (581)
T ss_pred chhHHHHHHHHHHh
Confidence 99999999877654
No 168
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.75 E-value=3.6e-17 Score=152.74 Aligned_cols=155 Identities=15% Similarity=0.086 Sum_probs=100.6
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEE--eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhh
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 189 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~--~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~ 189 (409)
.++ ++|.+|||||||++++++..+. ..+.+|........+ ......+.||||+| ++.+..+. ..++
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~~F~--~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG--~e~~~~~~-------~~~~ 82 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTAGLETEEQRVELSLWDTSG--SPYYDNVR-------PLCY 82 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcCCCC--CCcCCceeeeeEEEEEECCEEEEEEEEeCCC--chhhHHHH-------HHHc
Confidence 344 9999999999999999987654 233333222222222 23346789999999 44444332 3457
Q ss_pred cCcceEEEEeeCCCCCChHH--HHHHHHhccCCCCCCEEEEEecCCCCCh------------hhH-HHHHHHHHhcCCCc
Q 015293 190 INADCIVVLVDACKAPERID--EILEEGVGDHKDKLPILLVLNKKDLIKP------------GEI-AKKLEWYEKFTDVD 254 (409)
Q Consensus 190 ~~aDvillVvD~~~~~~~~~--~~l~~~l~~~~~~~p~ilvlNK~Dl~~~------------~~~-~~~~~~~~~~~~~~ 254 (409)
..||++++|+|+++...-.. ..+...+.....+.|+|||+||+|+... ..+ .+....+....+..
T Consensus 83 ~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~ 162 (232)
T cd04174 83 SDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAE 162 (232)
T ss_pred CCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCC
Confidence 89999999999987653221 2233333332357899999999998531 111 11223333333444
Q ss_pred eEEEcccCCCC-CHHHHHHHHHhhC
Q 015293 255 EVIPVSAKYGH-GVEDIRDWILTKL 278 (409)
Q Consensus 255 ~iv~iSA~~g~-gi~~L~~~L~~~l 278 (409)
++++|||++|+ ||+++|..++..+
T Consensus 163 ~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 163 VYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred EEEEccCCcCCcCHHHHHHHHHHHH
Confidence 68999999998 8999999988754
No 169
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.74 E-value=1.3e-17 Score=152.20 Aligned_cols=171 Identities=14% Similarity=0.185 Sum_probs=120.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeec-CCCceEEEEEEEEeCCCeeEEEEeCCCCchhh--hhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~-~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~--~~~l~~~~~~~~~~~~~~a 192 (409)
++|.||+|||||+|+|+|.+.+.... .++.|+........+++.++.++||||+.+.. ...+...+.+.+..+...+
T Consensus 5 lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~ 84 (196)
T cd01852 5 LVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGP 84 (196)
T ss_pred EECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999998764443 45778877777777788999999999997532 2245555666666667889
Q ss_pred ceEEEEeeCCCCCChHHHHHHHHhccC-C--CCCCEEEEEecCCCCChhhHHHH--------HHHHHhcCCC----ceEE
Q 015293 193 DCIVVLVDACKAPERIDEILEEGVGDH-K--DKLPILLVLNKKDLIKPGEIAKK--------LEWYEKFTDV----DEVI 257 (409)
Q Consensus 193 DvillVvD~~~~~~~~~~~l~~~l~~~-~--~~~p~ilvlNK~Dl~~~~~~~~~--------~~~~~~~~~~----~~iv 257 (409)
|++|||+|+.+ ....+..+++.++.. + .-.++++|+|++|......+... ........+. ....
T Consensus 85 ~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~ 163 (196)
T cd01852 85 HAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKA 163 (196)
T ss_pred EEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCC
Confidence 99999999987 655555555555432 1 12689999999998764332222 2222222221 1222
Q ss_pred EcccCCCCCHHHHHHHHHhhCCC-CCCCCCCc
Q 015293 258 PVSAKYGHGVEDIRDWILTKLPL-GPAYYPKD 288 (409)
Q Consensus 258 ~iSA~~g~gi~~L~~~L~~~l~~-~~~~~~~~ 288 (409)
+ |+..+.++.+|++.|.+++++ ++|.|..+
T Consensus 164 ~-~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~ 194 (196)
T cd01852 164 K-GEEQEQQVKELLAKVESMVKENGGKPYTND 194 (196)
T ss_pred C-cchhHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 2 467789999999999999987 77777654
No 170
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.74 E-value=1.3e-16 Score=139.72 Aligned_cols=158 Identities=27% Similarity=0.367 Sum_probs=105.5
Q ss_pred EEecCCCChHHHHHHHhC-CcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh-hhHhH---HHHHHHHHhhc
Q 015293 116 VLGKPNVGKSTLANQMIG-QKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-HMLDS---MMMKNVRSAGI 190 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~-~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~-~~l~~---~~~~~~~~~~~ 190 (409)
++|.+|+|||||+|+|++ ......++++++|........ + ..+.++||||+..... ..... .+.........
T Consensus 4 l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (170)
T cd01876 4 FAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV--N-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE 80 (170)
T ss_pred EEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc--c-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence 899999999999999994 444456677777766544332 2 3899999999743210 00111 11222223334
Q ss_pred CcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHH----HHhcCCCceEEEcccCCCCC
Q 015293 191 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW----YEKFTDVDEVIPVSAKYGHG 266 (409)
Q Consensus 191 ~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~----~~~~~~~~~iv~iSA~~g~g 266 (409)
.++++++|+|...........+...+.. .+.|+++|+||+|+............ +.......+++++||+++.|
T Consensus 81 ~~~~~~~v~d~~~~~~~~~~~~~~~l~~--~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~ 158 (170)
T cd01876 81 NLKGVVLLIDSRHGPTEIDLEMLDWLEE--LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQG 158 (170)
T ss_pred hhhEEEEEEEcCcCCCHhHHHHHHHHHH--cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCC
Confidence 6789999999987765555555555555 56899999999999765443322222 21123445789999999999
Q ss_pred HHHHHHHHHhhC
Q 015293 267 VEDIRDWILTKL 278 (409)
Q Consensus 267 i~~L~~~L~~~l 278 (409)
+.+++++|.+++
T Consensus 159 ~~~l~~~l~~~~ 170 (170)
T cd01876 159 IDELRALIEKWL 170 (170)
T ss_pred HHHHHHHHHHhC
Confidence 999999998753
No 171
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.74 E-value=5e-17 Score=150.05 Aligned_cols=155 Identities=22% Similarity=0.294 Sum_probs=100.9
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeC---CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhh
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 189 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~---~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~ 189 (409)
++ ++|.+|||||||++++++.++.... .+..+.+.....+.. ....+.+|||||. ..+..+ ...++
T Consensus 4 KIvvvG~~~vGKTsLi~~l~~~~~~~~~-~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 73 (211)
T cd04111 4 RLIVIGDSTVGKSSLLKRFTEGRFAEVS-DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ--ERFRSI-------TRSYY 73 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCC-CceeceEEEEEEEEECCCCEEEEEEEeCCcc--hhHHHH-------HHHHh
Confidence 45 9999999999999999988765332 222223333333322 2357899999994 333322 33457
Q ss_pred cCcceEEEEeeCCCCC--ChHHHHHHHHhccCC-CCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCceEEEcccCCCC
Q 015293 190 INADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 265 (409)
Q Consensus 190 ~~aDvillVvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilvlNK~Dl~~~~~~-~~~~~~~~~~~~~~~iv~iSA~~g~ 265 (409)
..+|++++|+|++++. .....++........ ...|++||+||+|+.....+ ......+....+ .+++++||++|.
T Consensus 74 ~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sak~g~ 152 (211)
T cd04111 74 RNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLG-MKYIETSARTGD 152 (211)
T ss_pred cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhC-CEEEEEeCCCCC
Confidence 8999999999998754 223333333322211 35778999999998653221 111222333333 579999999999
Q ss_pred CHHHHHHHHHhhCC
Q 015293 266 GVEDIRDWILTKLP 279 (409)
Q Consensus 266 gi~~L~~~L~~~l~ 279 (409)
|+++++++|.+.+.
T Consensus 153 ~v~e~f~~l~~~~~ 166 (211)
T cd04111 153 NVEEAFELLTQEIY 166 (211)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987653
No 172
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.74 E-value=3.8e-17 Score=146.31 Aligned_cols=154 Identities=21% Similarity=0.288 Sum_probs=98.4
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
++ ++|.||||||||++++++..+. ....+++.......+..+ +..+.+|||||. ..+..+ ....+.
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~~~-------~~~~~~ 71 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHFV--ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQ--DEYSIL-------PQKYSI 71 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc--cccCcchhhhEEEEEEECCEEEEEEEEECCCh--HhhHHH-------HHHHHh
Confidence 45 9999999999999999987653 333334433222333333 356789999994 332222 223467
Q ss_pred CcceEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCceEEEcccCCCCC
Q 015293 191 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGHG 266 (409)
Q Consensus 191 ~aDvillVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~-~~~~~~~~~~~~~iv~iSA~~g~g 266 (409)
.+|++++|+|+++.. +....++...++.. ..+.|+++|+||+|+.....+.. ....+....+ .+++++||++|.|
T Consensus 72 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 150 (180)
T cd04137 72 GIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWG-AAFLESSARENEN 150 (180)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcC-CeEEEEeCCCCCC
Confidence 899999999998754 22222223333221 15689999999999864322111 1112222222 4789999999999
Q ss_pred HHHHHHHHHhhCC
Q 015293 267 VEDIRDWILTKLP 279 (409)
Q Consensus 267 i~~L~~~L~~~l~ 279 (409)
+.+++.+|.+.+.
T Consensus 151 v~~l~~~l~~~~~ 163 (180)
T cd04137 151 VEEAFELLIEEIE 163 (180)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987664
No 173
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=5.1e-17 Score=161.86 Aligned_cols=154 Identities=20% Similarity=0.204 Sum_probs=122.3
Q ss_pred CeeE--EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeC-CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHh
Q 015293 112 NHKS--VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 188 (409)
Q Consensus 112 ~~~~--ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~-~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~ 188 (409)
+..+ |+|+...|||||+.+|.+..++. ....|.|.+.....++. .|..++|+|||| |..|..|++++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA-~E~GGITQhIGAF~V~~p~G~~iTFLDTPG--HaAF~aMRaRG------- 221 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAA-GEAGGITQHIGAFTVTLPSGKSITFLDTPG--HAAFSAMRARG------- 221 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceeh-hhcCCccceeceEEEecCCCCEEEEecCCc--HHHHHHHHhcc-------
Confidence 4444 99999999999999999999874 55667777754444332 678899999999 67788787765
Q ss_pred hcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHH------HHhcCCCceEEEcccC
Q 015293 189 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW------YEKFTDVDEVIPVSAK 262 (409)
Q Consensus 189 ~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~------~~~~~~~~~iv~iSA~ 262 (409)
..-+|++++||.+.++..+++.+.....+. .+.|+|+++||||......-....+. .+.+++..+++++||+
T Consensus 222 A~vtDIvVLVVAadDGVmpQT~EaIkhAk~--A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl 299 (683)
T KOG1145|consen 222 ANVTDIVVLVVAADDGVMPQTLEAIKHAKS--ANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISAL 299 (683)
T ss_pred CccccEEEEEEEccCCccHhHHHHHHHHHh--cCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecc
Confidence 678999999999999999998888887777 78999999999998754432222222 2345677899999999
Q ss_pred CCCCHHHHHHHHHhh
Q 015293 263 YGHGVEDIRDWILTK 277 (409)
Q Consensus 263 ~g~gi~~L~~~L~~~ 277 (409)
+|+|++.|.+++.-.
T Consensus 300 ~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 300 TGENLDLLEEAILLL 314 (683)
T ss_pred cCCChHHHHHHHHHH
Confidence 999999999988653
No 174
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=8.2e-17 Score=141.44 Aligned_cols=156 Identities=22% Similarity=0.249 Sum_probs=112.6
Q ss_pred EEecCCCChHHHHHHHhCCccee-eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|..+|||||||+++...++.. ...+.|.........+....+.+.+|||+| ++.++.+ +..+++++.+
T Consensus 27 flGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAG--QERFrsl-------ipsY~Rds~v 97 (221)
T KOG0094|consen 27 FLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG--QERFRSL-------IPSYIRDSSV 97 (221)
T ss_pred EEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEeccc--HHHHhhh-------hhhhccCCeE
Confidence 99999999999999998777642 112223222222333444557899999999 7776655 5567999999
Q ss_pred EEEEeeCCCCC--ChHHHHHHHHhccCCC-CCCEEEEEecCCCCChhhHHHHHH-HHHhcCCCceEEEcccCCCCCHHHH
Q 015293 195 IVVLVDACKAP--ERIDEILEEGVGDHKD-KLPILLVLNKKDLIKPGEIAKKLE-WYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 195 illVvD~~~~~--~~~~~~l~~~l~~~~~-~~p~ilvlNK~Dl~~~~~~~~~~~-~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
+|+|+|.++.. +....|+....+.... +.-++||+||.||.++.++..... ...+..+ ..++.+||++|+||..|
T Consensus 98 aviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~-a~f~etsak~g~NVk~l 176 (221)
T KOG0094|consen 98 AVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELN-AEFIETSAKAGENVKQL 176 (221)
T ss_pred EEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhC-cEEEEecccCCCCHHHH
Confidence 99999998765 5666787777666433 366789999999998765443221 2222223 26899999999999999
Q ss_pred HHHHHhhCCCC
Q 015293 271 RDWILTKLPLG 281 (409)
Q Consensus 271 ~~~L~~~l~~~ 281 (409)
|..|...++..
T Consensus 177 FrrIaa~l~~~ 187 (221)
T KOG0094|consen 177 FRRIAAALPGM 187 (221)
T ss_pred HHHHHHhccCc
Confidence 99999988754
No 175
>PRK12736 elongation factor Tu; Reviewed
Probab=99.73 E-value=4.2e-17 Score=164.26 Aligned_cols=154 Identities=19% Similarity=0.199 Sum_probs=111.5
Q ss_pred EEecCCCChHHHHHHHhCCcc------ee---------eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHH
Q 015293 116 VLGKPNVGKSTLANQMIGQKL------SI---------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSM 180 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~------~~---------v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~ 180 (409)
++|++++|||||+++|++... .. .....+.|.+.....+..++.++.|+||||+ ..
T Consensus 17 i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh--~~------- 87 (394)
T PRK12736 17 TIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGH--AD------- 87 (394)
T ss_pred EEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCH--HH-------
Confidence 999999999999999986311 00 1125677887766667677789999999994 22
Q ss_pred HHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCC-EEEEEecCCCCChhhHHH-----HHHHHHhcC---
Q 015293 181 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAK-----KLEWYEKFT--- 251 (409)
Q Consensus 181 ~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilvlNK~Dl~~~~~~~~-----~~~~~~~~~--- 251 (409)
++..+...+..+|++++|+|+..+...++..++..+.. .++| +|+|+||+|+.+..+..+ ....+....
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~--~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 165 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ--VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPG 165 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCc
Confidence 34455666789999999999998887777777776665 5678 678999999975433222 112222211
Q ss_pred CCceEEEcccCCCC--------CHHHHHHHHHhhCCC
Q 015293 252 DVDEVIPVSAKYGH--------GVEDIRDWILTKLPL 280 (409)
Q Consensus 252 ~~~~iv~iSA~~g~--------gi~~L~~~L~~~l~~ 280 (409)
...+++++||++|. ++.+|++.|.+.++.
T Consensus 166 ~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~ 202 (394)
T PRK12736 166 DDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPT 202 (394)
T ss_pred CCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCC
Confidence 23589999999983 689999999988863
No 176
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.73 E-value=9.2e-17 Score=143.94 Aligned_cols=152 Identities=27% Similarity=0.362 Sum_probs=106.9
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
.++ ++|.+|+||||++++|.......+.++.| .....+...+..+.+||.+| +.....+ +..++..
T Consensus 15 ~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g----~~~~~i~~~~~~~~~~d~gG--~~~~~~~-------w~~y~~~ 81 (175)
T PF00025_consen 15 IKILILGLDGSGKTTLLNRLKNGEISETIPTIG----FNIEEIKYKGYSLTIWDLGG--QESFRPL-------WKSYFQN 81 (175)
T ss_dssp EEEEEEESTTSSHHHHHHHHHSSSEEEEEEESS----EEEEEEEETTEEEEEEEESS--SGGGGGG-------GGGGHTT
T ss_pred EEEEEECCCccchHHHHHHhhhccccccCcccc----cccceeeeCcEEEEEEeccc--ccccccc-------ceeeccc
Confidence 344 99999999999999999876554333333 22334556789999999999 4443333 4456789
Q ss_pred cceEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHH--hc--CCCceEEEcccCCC
Q 015293 192 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE--KF--TDVDEVIPVSAKYG 264 (409)
Q Consensus 192 aDvillVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~--~~--~~~~~iv~iSA~~g 264 (409)
+|++|||+|+++.. .+....+.+.+... ..++|++|++||+|+.......++...+. .. .....++.+||.+|
T Consensus 82 ~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g 161 (175)
T PF00025_consen 82 ADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTG 161 (175)
T ss_dssp ESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTT
T ss_pred cceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCC
Confidence 99999999998753 33344455544431 15799999999999876544443333322 11 23457899999999
Q ss_pred CCHHHHHHHHHhh
Q 015293 265 HGVEDIRDWILTK 277 (409)
Q Consensus 265 ~gi~~L~~~L~~~ 277 (409)
+|+.+.++||.+.
T Consensus 162 ~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 162 EGVDEGLEWLIEQ 174 (175)
T ss_dssp BTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhc
Confidence 9999999999864
No 177
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.73 E-value=4.3e-17 Score=144.38 Aligned_cols=147 Identities=16% Similarity=0.159 Sum_probs=97.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|.+|||||||++++.+..+. ..+..|.... ...+..++..+.+|||||. ..+..+ +..+++.||++
T Consensus 4 ivG~~~vGKTsli~~~~~~~~~--~~~~pt~g~~-~~~i~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~~~ad~i 71 (164)
T cd04162 4 VLGLDGAGKTSLLHSLSSERSL--ESVVPTTGFN-SVAIPTQDAIMELLEIGGS--QNLRKY-------WKRYLSGSQGL 71 (164)
T ss_pred EECCCCCCHHHHHHHHhcCCCc--ccccccCCcc-eEEEeeCCeEEEEEECCCC--cchhHH-------HHHHHhhCCEE
Confidence 8999999999999999987543 2222221111 1234566789999999994 333322 33457899999
Q ss_pred EEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHH-----HHhcCCCceEEEcccCC-----
Q 015293 196 VVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW-----YEKFTDVDEVIPVSAKY----- 263 (409)
Q Consensus 196 llVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~-----~~~~~~~~~iv~iSA~~----- 263 (409)
++|+|+++.. .....++...+.. ..++|+++|+||+|+........+... +... ...+++++||++
T Consensus 72 i~V~D~t~~~s~~~~~~~l~~~~~~-~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~Sa~~~~s~~ 149 (164)
T cd04162 72 IFVVDSADSERLPLARQELHQLLQH-PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARG-RRWILQGTSLDDDGSPS 149 (164)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhC-CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCC-CceEEEEeeecCCCChh
Confidence 9999998754 2233344444332 267999999999998765443332211 1111 124678888888
Q ss_pred -CCCHHHHHHHHHh
Q 015293 264 -GHGVEDIRDWILT 276 (409)
Q Consensus 264 -g~gi~~L~~~L~~ 276 (409)
++||.++|+.|..
T Consensus 150 ~~~~v~~~~~~~~~ 163 (164)
T cd04162 150 RMEAVKDLLSQLIN 163 (164)
T ss_pred HHHHHHHHHHHHhc
Confidence 9999999998864
No 178
>CHL00071 tufA elongation factor Tu
Probab=99.73 E-value=1.2e-16 Score=161.78 Aligned_cols=156 Identities=19% Similarity=0.187 Sum_probs=112.5
Q ss_pred eeE-EEecCCCChHHHHHHHhCCccee---------------eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhh
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSI---------------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 176 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~---------------v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 176 (409)
..+ ++|++|+|||||+|+|++....+ .....+.|.+.....+..++.++.|+||||+.
T Consensus 13 ~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~------ 86 (409)
T CHL00071 13 VNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA------ 86 (409)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH------
Confidence 334 99999999999999999753211 11236778777666677788899999999942
Q ss_pred HhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCC-EEEEEecCCCCChhhHHH-----HHHHHHhc
Q 015293 177 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAK-----KLEWYEKF 250 (409)
Q Consensus 177 l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilvlNK~Dl~~~~~~~~-----~~~~~~~~ 250 (409)
.++..+...+..+|++++|+|+..+...++..++..+.. .++| +|+++||+|+.+..+..+ +...+...
T Consensus 87 ---~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~--~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~ 161 (409)
T CHL00071 87 ---DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQ--VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKY 161 (409)
T ss_pred ---HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 245666677889999999999998888887777777665 5678 678999999986443221 22222221
Q ss_pred C---CCceEEEcccCCCCC------------------HHHHHHHHHhhCC
Q 015293 251 T---DVDEVIPVSAKYGHG------------------VEDIRDWILTKLP 279 (409)
Q Consensus 251 ~---~~~~iv~iSA~~g~g------------------i~~L~~~L~~~l~ 279 (409)
. ...+++++||.+|.+ +..|+++|.+.++
T Consensus 162 ~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~ 211 (409)
T CHL00071 162 DFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIP 211 (409)
T ss_pred CCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCC
Confidence 1 136899999999863 5677777777654
No 179
>PLN03127 Elongation factor Tu; Provisional
Probab=99.73 E-value=8.7e-17 Score=163.79 Aligned_cols=153 Identities=19% Similarity=0.211 Sum_probs=110.6
Q ss_pred EEecCCCChHHHHHHHhCC------cceee---------ecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHH
Q 015293 116 VLGKPNVGKSTLANQMIGQ------KLSIV---------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSM 180 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~------~~~~v---------~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~ 180 (409)
++|++|+|||||+++|.+. ..... ....|+|.+.....++.++.++.|+||||+..
T Consensus 66 iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~--------- 136 (447)
T PLN03127 66 TIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD--------- 136 (447)
T ss_pred EECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc---------
Confidence 9999999999999999732 21111 22378888888778888889999999999632
Q ss_pred HHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCC-EEEEEecCCCCChhhHHHHH-----HHHHhc---C
Q 015293 181 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKKL-----EWYEKF---T 251 (409)
Q Consensus 181 ~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilvlNK~Dl~~~~~~~~~~-----~~~~~~---~ 251 (409)
++..+...+..+|++++|+|+..+...++..++..+.. .+.| +|+++||+|+.+.....+.. ..+... .
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~--~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~ 214 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ--VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPG 214 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34455556678999999999998887877777777766 6788 47899999998643322211 111111 1
Q ss_pred CCceEEEcccC---CCCC-------HHHHHHHHHhhCC
Q 015293 252 DVDEVIPVSAK---YGHG-------VEDIRDWILTKLP 279 (409)
Q Consensus 252 ~~~~iv~iSA~---~g~g-------i~~L~~~L~~~l~ 279 (409)
...+++++||. +|.| +..|+++|.+.++
T Consensus 215 ~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 215 DEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 23578888876 4555 7899999998876
No 180
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.73 E-value=1.2e-16 Score=148.46 Aligned_cols=152 Identities=13% Similarity=0.129 Sum_probs=99.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~--~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||++++.+..+. ..+..|..+..... +......+.||||+| ++.+..++. .++..+|
T Consensus 6 vvGd~~vGKTsLi~~~~~~~f~--~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G--~e~~~~l~~-------~~~~~~d 74 (222)
T cd04173 6 VVGDAECGKTALLQVFAKDAYP--GSYVPTVFENYTASFEIDKRRIELNMWDTSG--SSYYDNVRP-------LAYPDSD 74 (222)
T ss_pred EECCCCCCHHHHHHHHHcCCCC--CccCCccccceEEEEEECCEEEEEEEEeCCC--cHHHHHHhH-------HhccCCC
Confidence 9999999999999999987754 23333332222222 223346788999999 444444433 3478999
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhh------------H-HHHHHHHHhcCCCceEEE
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------I-AKKLEWYEKFTDVDEVIP 258 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~------------~-~~~~~~~~~~~~~~~iv~ 258 (409)
++|+|+|++++.. .....+...++....+.|+|||+||+|+..... + .+....+.+..+..++++
T Consensus 75 ~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E 154 (222)
T cd04173 75 AVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVE 154 (222)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEE
Confidence 9999999987642 222223333333336799999999999864211 0 011222333344458999
Q ss_pred cccCCCCC-HHHHHHHHHhhC
Q 015293 259 VSAKYGHG-VEDIRDWILTKL 278 (409)
Q Consensus 259 iSA~~g~g-i~~L~~~L~~~l 278 (409)
|||+++.| |+++|.......
T Consensus 155 ~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 155 CSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred cCCCcCCcCHHHHHHHHHHHH
Confidence 99999985 999999877643
No 181
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=8.9e-17 Score=141.69 Aligned_cols=155 Identities=19% Similarity=0.205 Sum_probs=107.6
Q ss_pred EEecCCCChHHHHHHHhCCccee-eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
|+|..|||||+|+.++.+..+.. ...+.|.......-.+.....++.+|||+| ++.++ ..+..+++.|+.
T Consensus 14 liGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAG--QERFr-------tit~syYR~ahG 84 (205)
T KOG0084|consen 14 LIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAG--QERFR-------TITSSYYRGAHG 84 (205)
T ss_pred EECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccc--cHHHh-------hhhHhhccCCCe
Confidence 99999999999999999887641 112222222222222344456899999999 65544 346678999999
Q ss_pred EEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCceEEEcccCCCCCHHHHH
Q 015293 195 IVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGHGVEDIR 271 (409)
Q Consensus 195 illVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~-~~~~~~~~~~~~~iv~iSA~~g~gi~~L~ 271 (409)
||+|+|+++.. .....|+.+.-+....+.|.++|+||+|+.....+.. ....+....+...++++||+++.|+++.|
T Consensus 85 ii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F 164 (205)
T KOG0084|consen 85 IIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAF 164 (205)
T ss_pred EEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHH
Confidence 99999998754 4455666555443336689999999999976543322 12233444444348999999999999999
Q ss_pred HHHHhhCC
Q 015293 272 DWILTKLP 279 (409)
Q Consensus 272 ~~L~~~l~ 279 (409)
..|...+.
T Consensus 165 ~~la~~lk 172 (205)
T KOG0084|consen 165 LTLAKELK 172 (205)
T ss_pred HHHHHHHH
Confidence 98887654
No 182
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.72 E-value=1.3e-16 Score=141.81 Aligned_cols=153 Identities=21% Similarity=0.225 Sum_probs=96.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeC--CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~--~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|++|||||||++++++..+.. ...+....+.....+.. ....+.+|||||. ..+.. . ....+++.+|
T Consensus 7 vvG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~---~---~~~~~~~~~d 77 (170)
T cd04115 7 VIGDSNVGKTCLTYRFCAGRFPE-RTEATIGVDFRERTVEIDGERIKVQLWDTAGQ--ERFRK---S---MVQHYYRNVH 77 (170)
T ss_pred EECCCCCCHHHHHHHHHhCCCCC-ccccceeEEEEEEEEEECCeEEEEEEEeCCCh--HHHHH---h---hHHHhhcCCC
Confidence 99999999999999999876532 11222222222222333 3368899999994 32211 1 1234468999
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhcc-CCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCceEEEcccCC---CCC
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKY---GHG 266 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~-~~~~~p~ilvlNK~Dl~~~~~~~-~~~~~~~~~~~~~~iv~iSA~~---g~g 266 (409)
++++|+|++++.. ....++...... ...+.|+++|+||+|+.....+. .....+..... .+++++||++ +.|
T Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~~~~ 156 (170)
T cd04115 78 AVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHS-MPLFETSAKDPSENDH 156 (170)
T ss_pred EEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcC-CcEEEEeccCCcCCCC
Confidence 9999999987642 222232222211 11569999999999986443221 11222222222 5789999999 899
Q ss_pred HHHHHHHHHhhC
Q 015293 267 VEDIRDWILTKL 278 (409)
Q Consensus 267 i~~L~~~L~~~l 278 (409)
+++++..|.+.+
T Consensus 157 i~~~f~~l~~~~ 168 (170)
T cd04115 157 VEAIFMTLAHKL 168 (170)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 183
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.72 E-value=2.2e-16 Score=146.94 Aligned_cols=150 Identities=18% Similarity=0.222 Sum_probs=102.1
Q ss_pred EEecCCCChHHHHHHHhCCccee------e--e-----cCCCceE------------------------EEEEEEEeCCC
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI------V--T-----NKPQTTR------------------------HRILGICSGPE 158 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~------v--~-----~~~~tt~------------------------~~~~~~~~~~~ 158 (409)
++|++++|||||+++|....+.. . . ...|.|. ......+...+
T Consensus 4 ~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (224)
T cd04165 4 VVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICEKSS 83 (224)
T ss_pred EECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeeeeCC
Confidence 88999999999999998533210 0 0 0001110 00012334556
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHHhh--cCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 159 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAG--INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 159 ~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~--~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
..+.|+||||+.. +.+.+...+ ..+|++++|+|+..+....+..++..+.. .++|+++|+||+|+.+
T Consensus 84 ~~i~liDtpG~~~---------~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~--~~ip~ivvvNK~D~~~ 152 (224)
T cd04165 84 KLVTFIDLAGHER---------YLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALA--LNIPVFVVVTKIDLAP 152 (224)
T ss_pred cEEEEEECCCcHH---------HHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEECccccC
Confidence 7899999999532 223333334 37899999999999888888877777776 6789999999999987
Q ss_pred hhhHHHHHHHHHhc----------------------------CCCceEEEcccCCCCCHHHHHHHHHh
Q 015293 237 PGEIAKKLEWYEKF----------------------------TDVDEVIPVSAKYGHGVEDIRDWILT 276 (409)
Q Consensus 237 ~~~~~~~~~~~~~~----------------------------~~~~~iv~iSA~~g~gi~~L~~~L~~ 276 (409)
..........+... ....|+|++||.+|+|+++|...|..
T Consensus 153 ~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 153 ANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 65544433332221 12448999999999999999988854
No 184
>PRK10218 GTP-binding protein; Provisional
Probab=99.72 E-value=4.8e-16 Score=163.06 Aligned_cols=195 Identities=16% Similarity=0.202 Sum_probs=131.8
Q ss_pred EEecCCCChHHHHHHHhCCcceee---------------ecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV---------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSM 180 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v---------------~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~ 180 (409)
++|++++|||||+++|+....... ....+.|.......+.+++..+.+|||||+.+
T Consensus 10 IiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~d--------- 80 (607)
T PRK10218 10 IIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHAD--------- 80 (607)
T ss_pred EECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcch---------
Confidence 999999999999999996322111 12345666666667788899999999999533
Q ss_pred HHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh---HHHHHHHHHhcC-----C
Q 015293 181 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFT-----D 252 (409)
Q Consensus 181 ~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~---~~~~~~~~~~~~-----~ 252 (409)
+...+..+++.+|++|+|+|+..+...++..++..+.. .++|.++++||+|+..... +.+....+.... .
T Consensus 81 f~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~--~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~ 158 (607)
T PRK10218 81 FGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA--YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred hHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH--cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence 22345566889999999999998887777666665554 6789999999999864322 223333332111 1
Q ss_pred CceEEEcccCCCC----------CHHHHHHHHHhhCCCCCCCCCCccccCchHHHHHHHHHHHHHHhhcCCCCCceeEEE
Q 015293 253 VDEVIPVSAKYGH----------GVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVN 322 (409)
Q Consensus 253 ~~~iv~iSA~~g~----------gi~~L~~~L~~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~~~~eipys~~v~ 322 (409)
..|++++||++|. |+..|++.|.+.+|..... .+.|.+..+..+ .+.+.++..+..+
T Consensus 159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~------~~~Pl~~~V~k~-------~~d~~~G~i~~gR 225 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVD------LDGPFQMQISQL-------DYNSYVGVIGIGR 225 (607)
T ss_pred CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCC------CCCCeEEEEEee-------EecCCCcEEEEEE
Confidence 2479999999998 6999999999999743211 112222212110 1245567777788
Q ss_pred EEEEEecCCCee
Q 015293 323 VVSYKTRPTAKD 334 (409)
Q Consensus 323 v~~~~~~~~~~~ 334 (409)
+..+..+.+..+
T Consensus 226 V~sG~lk~Gd~v 237 (607)
T PRK10218 226 IKRGKVKPNQQV 237 (607)
T ss_pred EEeCcCcCCCEE
Confidence 888877655444
No 185
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.72 E-value=8.3e-17 Score=149.67 Aligned_cols=152 Identities=23% Similarity=0.269 Sum_probs=95.0
Q ss_pred EEecCCCChHHHHHHHhCCcce-eeecCCCc-eEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc-Cc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLS-IVTNKPQT-TRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI-NA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~-~v~~~~~t-t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~-~a 192 (409)
++|.+|||||||++++++..+. .....++. +.......+......+.+|||||.. ..+.. ..+. .+
T Consensus 5 lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~----~~~~~-------~~~~~~a 73 (221)
T cd04148 5 MLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE----MWTED-------SCMQYQG 73 (221)
T ss_pred EECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc----hHHHh-------HHhhcCC
Confidence 9999999999999999876653 11111111 1111222233345779999999953 11111 1234 89
Q ss_pred ceEEEEeeCCCCCC--hHHHHHHHHhcc-CCCCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 193 DCIVVLVDACKAPE--RIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 193 DvillVvD~~~~~~--~~~~~l~~~l~~-~~~~~p~ilvlNK~Dl~~~~~~~~-~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
|++++|+|+++... ....++..+... ...+.|+++|+||+|+.....+.. ....+....+ .+++++||++|.|++
T Consensus 74 d~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~SA~~~~gv~ 152 (221)
T cd04148 74 DAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFD-CKFIETSAGLQHNVD 152 (221)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcC-CeEEEecCCCCCCHH
Confidence 99999999987642 122232222221 115789999999999865432211 1112222222 378999999999999
Q ss_pred HHHHHHHhhCC
Q 015293 269 DIRDWILTKLP 279 (409)
Q Consensus 269 ~L~~~L~~~l~ 279 (409)
+++++|.+.+.
T Consensus 153 ~l~~~l~~~~~ 163 (221)
T cd04148 153 ELLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 186
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.72 E-value=4.7e-17 Score=143.65 Aligned_cols=151 Identities=19% Similarity=0.232 Sum_probs=94.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEE--EEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~--~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+++++...+. ..++.++.... ...+......+.+|||||....... .....++.+|
T Consensus 4 vvG~~~~GKtsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~~~d 73 (165)
T cd04146 4 VLGASGVGKSALVVRFLTKRFI--GEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTE--------QLERSIRWAD 73 (165)
T ss_pred EECCCCCcHHHHHHHHHhCccc--cccCCChHHhceEEEEECCEEEEEEEEECCCCcccccc--------hHHHHHHhCC
Confidence 8999999999999999876552 33344432222 2223333456889999995321111 1223467899
Q ss_pred eEEEEeeCCCCCCh--HHHHHHHHhccC---CCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCceEEEcccCCC-CC
Q 015293 194 CIVVLVDACKAPER--IDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG-HG 266 (409)
Q Consensus 194 villVvD~~~~~~~--~~~~l~~~l~~~---~~~~p~ilvlNK~Dl~~~~~~~-~~~~~~~~~~~~~~iv~iSA~~g-~g 266 (409)
++++|+|++++..- ...++ ..+... ..+.|+++|+||+|+.....+. .....+....+ .+++++||++| .|
T Consensus 74 ~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~~ 151 (165)
T cd04146 74 GFVLVYSITDRSSFDEISQLK-QLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELG-CLFFEVSAAEDYDG 151 (165)
T ss_pred EEEEEEECCCHHHHHHHHHHH-HHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcC-CEEEEeCCCCCchh
Confidence 99999999876421 22222 222211 2479999999999985432211 11112222223 47899999999 49
Q ss_pred HHHHHHHHHhhC
Q 015293 267 VEDIRDWILTKL 278 (409)
Q Consensus 267 i~~L~~~L~~~l 278 (409)
+++++..|.+.+
T Consensus 152 v~~~f~~l~~~~ 163 (165)
T cd04146 152 VHSVFHELCREV 163 (165)
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 187
>PRK00007 elongation factor G; Reviewed
Probab=99.72 E-value=5.5e-17 Score=174.17 Aligned_cols=110 Identities=20% Similarity=0.226 Sum_probs=88.6
Q ss_pred EEecCCCChHHHHHHHhC---Ccce--eee------------cCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHh
Q 015293 116 VLGKPNVGKSTLANQMIG---QKLS--IVT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLD 178 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~---~~~~--~v~------------~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~ 178 (409)
|+|++|+|||||+|+|+. .... .+. ...++|.+.....+.+++.+++|+||||+.+
T Consensus 15 iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~------- 87 (693)
T PRK00007 15 IMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD------- 87 (693)
T ss_pred EECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH-------
Confidence 999999999999999973 2111 122 3567888887777888999999999999643
Q ss_pred HHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 179 SMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 179 ~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
+...+..++..+|++|+|+|+..+...++..++..+.. .++|+|+++||+|+..
T Consensus 88 --f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~--~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 88 --FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADK--YKVPRIAFVNKMDRTG 141 (693)
T ss_pred --HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 23346677889999999999999988888888887776 6799999999999864
No 188
>PRK12739 elongation factor G; Reviewed
Probab=99.72 E-value=4.3e-17 Score=175.05 Aligned_cols=110 Identities=20% Similarity=0.245 Sum_probs=88.3
Q ss_pred EEecCCCChHHHHHHHhCCc-----ceeee------------cCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHh
Q 015293 116 VLGKPNVGKSTLANQMIGQK-----LSIVT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLD 178 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~-----~~~v~------------~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~ 178 (409)
|+|++|+|||||+|+|+... ...+. ...++|.+.....+.+++.+++|+||||+..
T Consensus 13 iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~------- 85 (691)
T PRK12739 13 IMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD------- 85 (691)
T ss_pred EECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH-------
Confidence 99999999999999997531 11122 2456777777777888999999999999532
Q ss_pred HHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 179 SMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 179 ~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
+...+..++..+|++++|+|+..+...++..++..+.. .++|+|+++||+|+..
T Consensus 86 --f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~--~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 86 --FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADK--YGVPRIVFVNKMDRIG 139 (691)
T ss_pred --HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 33457777899999999999999988888888777766 6799999999999974
No 189
>PLN03108 Rab family protein; Provisional
Probab=99.72 E-value=1.4e-16 Score=146.96 Aligned_cols=154 Identities=19% Similarity=0.217 Sum_probs=98.6
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhh
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 189 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~ 189 (409)
.++ |+|.+|+|||||+++|++..+... ..+....+.....+..++ ..+.+|||||. ..+..+ ....+
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~-~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~--~~~~~~-------~~~~~ 76 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDNKPIKLQIWDTAGQ--ESFRSI-------TRSYY 76 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCccceEEEEEEEECCEEEEEEEEeCCCc--HHHHHH-------HHHHh
Confidence 344 999999999999999998876432 122222222222333333 56889999994 332222 33456
Q ss_pred cCcceEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCC
Q 015293 190 INADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGH 265 (409)
Q Consensus 190 ~~aDvillVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~ 265 (409)
..+|++++|+|+++... ....++...........|+++|+||+|+..... ......+... .+ .+++++||++|.
T Consensus 77 ~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~e~Sa~~~~ 154 (210)
T PLN03108 77 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HG-LIFMEASAKTAQ 154 (210)
T ss_pred ccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHH-cC-CEEEEEeCCCCC
Confidence 78999999999987542 222333322222225789999999999865321 1222222222 23 379999999999
Q ss_pred CHHHHHHHHHhhC
Q 015293 266 GVEDIRDWILTKL 278 (409)
Q Consensus 266 gi~~L~~~L~~~l 278 (409)
|++++|.++...+
T Consensus 155 ~v~e~f~~l~~~~ 167 (210)
T PLN03108 155 NVEEAFIKTAAKI 167 (210)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999987655
No 190
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.72 E-value=1.6e-16 Score=167.22 Aligned_cols=196 Identities=25% Similarity=0.285 Sum_probs=124.4
Q ss_pred eeEEEecCCCChHHHHHHHhCCccee--------ee------cCCCceEEEEEEEEe-----CCCeeEEEEeCCCCchhh
Q 015293 113 HKSVLGKPNVGKSTLANQMIGQKLSI--------VT------NKPQTTRHRILGICS-----GPEYQMILYDTPGIIEKK 173 (409)
Q Consensus 113 ~~~ivG~~n~GKSsLln~l~~~~~~~--------v~------~~~~tt~~~~~~~~~-----~~~~~i~liDtpG~~~~~ 173 (409)
+-+|+|+.++|||||+++|+.....+ +. ...|.|.......+. ..+..++||||||+.+
T Consensus 9 Ni~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d-- 86 (600)
T PRK05433 9 NFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD-- 86 (600)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH--
Confidence 33399999999999999998632111 11 112334333222222 2357899999999643
Q ss_pred hhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCC
Q 015293 174 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV 253 (409)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~ 253 (409)
+...+..++..||++|+|+|++++.+.++...+..+.. .+.|+++|+||+|+..... ......+....+.
T Consensus 87 -------F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~--~~lpiIvViNKiDl~~a~~-~~v~~ei~~~lg~ 156 (600)
T PRK05433 87 -------FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--NDLEIIPVLNKIDLPAADP-ERVKQEIEDVIGI 156 (600)
T ss_pred -------HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEEEECCCCCcccH-HHHHHHHHHHhCC
Confidence 22334556789999999999998876665544443333 5789999999999864321 1122222222222
Q ss_pred --ceEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCccccCchHHHHHHHHHHHHHHhh-cCCCCCceeEEEEEEEEecC
Q 015293 254 --DEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQ-YRNEVPYACQVNVVSYKTRP 330 (409)
Q Consensus 254 --~~iv~iSA~~g~gi~~L~~~L~~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~-~~~eipys~~v~v~~~~~~~ 330 (409)
..++++||++|.|+++|+++|.+.++.... ..+.|.+.+ +++. +.+..|..+.+.+..+..+.
T Consensus 157 ~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~------~~~~pl~~~--------Vfd~~~d~~~G~v~~~rV~sG~Lk~ 222 (600)
T PRK05433 157 DASDAVLVSAKTGIGIEEVLEAIVERIPPPKG------DPDAPLKAL--------IFDSWYDNYRGVVVLVRVVDGTLKK 222 (600)
T ss_pred CcceEEEEecCCCCCHHHHHHHHHHhCccccC------CCCCCceEE--------EEEEEecCCCceEEEEEEEcCEEec
Confidence 358999999999999999999998874321 112232211 1222 24567778888888888776
Q ss_pred CCee
Q 015293 331 TAKD 334 (409)
Q Consensus 331 ~~~~ 334 (409)
+..+
T Consensus 223 Gd~i 226 (600)
T PRK05433 223 GDKI 226 (600)
T ss_pred CCEE
Confidence 5444
No 191
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.72 E-value=5.7e-17 Score=154.26 Aligned_cols=161 Identities=20% Similarity=0.236 Sum_probs=120.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeC-CCeeEEEEeCCCCchhhhh--hHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIH--MLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~-~~~~i~liDtpG~~~~~~~--~l~~~~~~~~~~~~~~a 192 (409)
+||.||+|||||++++...+.. +.++|.||..+..+++.. .+..+++-|.||++..... .|...|.+ .+..|
T Consensus 164 LVG~PNaGKSTlls~vS~AkPK-IadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLr----HIERt 238 (369)
T COG0536 164 LVGLPNAGKSTLLSAVSAAKPK-IADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLR----HIERT 238 (369)
T ss_pred cccCCCCcHHHHHHHHhhcCCc-ccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHH----HHHhh
Confidence 9999999999999999998865 799999999999998885 5567999999999875433 34444444 46789
Q ss_pred ceEEEEeeCCCCC----ChHHHHHHHHhccCC---CCCCEEEEEecCCCC-ChhhHHHHHHHHHhcCCCceEEEcccCCC
Q 015293 193 DCIVVLVDACKAP----ERIDEILEEGVGDHK---DKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSAKYG 264 (409)
Q Consensus 193 DvillVvD~~~~~----~~~~~~l~~~l~~~~---~~~p~ilvlNK~Dl~-~~~~~~~~~~~~~~~~~~~~iv~iSA~~g 264 (409)
-++++|+|++... ......+...+..+. .++|.+||+||+|+. ..+........+.........+++||.++
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence 9999999998543 223334444444432 579999999999955 44555555555555444333334999999
Q ss_pred CCHHHHHHHHHhhCCCC
Q 015293 265 HGVEDIRDWILTKLPLG 281 (409)
Q Consensus 265 ~gi~~L~~~L~~~l~~~ 281 (409)
+|+++|...+.+.+...
T Consensus 319 ~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 319 EGLDELLRALAELLEET 335 (369)
T ss_pred cCHHHHHHHHHHHHHHh
Confidence 99999999999887654
No 192
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.72 E-value=6.6e-16 Score=162.07 Aligned_cols=148 Identities=24% Similarity=0.305 Sum_probs=97.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCC-CceEEEEEEEEeCC------------------CeeEEEEeCCCCchhhhhh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILGICSGP------------------EYQMILYDTPGIIEKKIHM 176 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~-~tt~~~~~~~~~~~------------------~~~i~liDtpG~~~~~~~~ 176 (409)
++|++|+|||||+|+|.+..+. +..+ +.|++......... -..+.||||||+ ..+..
T Consensus 11 i~Gh~~~GKTSLl~~l~~~~v~--~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~--e~f~~ 86 (586)
T PRK04004 11 VLGHVDHGKTTLLDKIRGTAVA--AKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH--EAFTN 86 (586)
T ss_pred EECCCCCCHHHHHHHHhCcccc--cCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh--HHHHH
Confidence 9999999999999999987653 2333 23333221111110 013789999994 44433
Q ss_pred HhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh-----------------
Q 015293 177 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE----------------- 239 (409)
Q Consensus 177 l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~----------------- 239 (409)
+. ...+..+|++++|+|++++...++......+.. .+.|+++++||+|+.....
T Consensus 87 ~~-------~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 87 LR-------KRGGALADIAILVVDINEGFQPQTIEAINILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HH-------HHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 32 234678999999999998776666666666655 6799999999999852100
Q ss_pred HH--------HHHHHHH-------------hcCCCceEEEcccCCCCCHHHHHHHHHh
Q 015293 240 IA--------KKLEWYE-------------KFTDVDEVIPVSAKYGHGVEDIRDWILT 276 (409)
Q Consensus 240 ~~--------~~~~~~~-------------~~~~~~~iv~iSA~~g~gi~~L~~~L~~ 276 (409)
.. +....+. .+.+..+++++||++|+|+++|++.+..
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 0111111 1223457999999999999999988754
No 193
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.72 E-value=4.5e-16 Score=163.37 Aligned_cols=197 Identities=16% Similarity=0.176 Sum_probs=132.7
Q ss_pred EEEecCCCChHHHHHHHhCCccee-----e----------ecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhH
Q 015293 115 SVLGKPNVGKSTLANQMIGQKLSI-----V----------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDS 179 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~~~~~~-----v----------~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~ 179 (409)
.|+|++++|||||+++|+.....+ + ....|.|.......+.+++..+.||||||+. .
T Consensus 5 aIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~--D------ 76 (594)
T TIGR01394 5 AIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHA--D------ 76 (594)
T ss_pred EEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHH--H------
Confidence 399999999999999998532111 1 1123556666666678889999999999953 2
Q ss_pred HHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh---HHHHHHHHHhcC-----
Q 015293 180 MMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFT----- 251 (409)
Q Consensus 180 ~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~---~~~~~~~~~~~~----- 251 (409)
|...+..+++.+|++++|+|+..+...++..++..+.. .+.|+++|+||+|+..... ..+....+....
T Consensus 77 -F~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~--~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~ 153 (594)
T TIGR01394 77 -FGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQ 153 (594)
T ss_pred -HHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHH--CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccccc
Confidence 33445666889999999999998887777777766665 6789999999999864321 222233332111
Q ss_pred CCceEEEcccCCCC----------CHHHHHHHHHhhCCCCCCCCCCccccCchHHHHHHHHHHHHHHhhcCCCCCceeEE
Q 015293 252 DVDEVIPVSAKYGH----------GVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQV 321 (409)
Q Consensus 252 ~~~~iv~iSA~~g~----------gi~~L~~~L~~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~~~~eipys~~v 321 (409)
...+++++||++|. |+..|++.|.+.+|..... .+.|.+..+..+ ...+.++..+..
T Consensus 154 l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~------~~~pl~~~V~~i-------~~d~~~Grv~~g 220 (594)
T TIGR01394 154 LDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGD------LDEPLQMLVTNL-------DYDEYLGRIAIG 220 (594)
T ss_pred ccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCC------CCCCEEEEEEEE-------EeeCCCceEEEE
Confidence 12378999999996 8999999999999754221 112222211110 123456777788
Q ss_pred EEEEEEecCCCeeE
Q 015293 322 NVVSYKTRPTAKDF 335 (409)
Q Consensus 322 ~v~~~~~~~~~~~~ 335 (409)
.+..+..+.+..+.
T Consensus 221 RV~sG~lk~G~~V~ 234 (594)
T TIGR01394 221 RVHRGTVKKGQQVA 234 (594)
T ss_pred EEEeCEEccCCEEE
Confidence 88888777654443
No 194
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.71 E-value=3.4e-16 Score=149.44 Aligned_cols=110 Identities=22% Similarity=0.241 Sum_probs=79.1
Q ss_pred EEecCCCChHHHHHHHhCCcceee---------------ecC------CCceEEEEEEEEeCCCeeEEEEeCCCCchhhh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV---------------TNK------PQTTRHRILGICSGPEYQMILYDTPGIIEKKI 174 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v---------------~~~------~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~ 174 (409)
|+|++|+|||||+++|+.....+. .+. -+.+.......+.+++.++.+|||||+.+
T Consensus 7 ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d--- 83 (267)
T cd04169 7 IISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED--- 83 (267)
T ss_pred EEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH---
Confidence 999999999999999985432211 111 01222233445778899999999999532
Q ss_pred hhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 175 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 175 ~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
+...+..+++.+|++++|+|++.+.......++..... .++|+++++||+|+..
T Consensus 84 ------f~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~--~~~P~iivvNK~D~~~ 137 (267)
T cd04169 84 ------FSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL--RGIPIITFINKLDREG 137 (267)
T ss_pred ------HHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHh--cCCCEEEEEECCccCC
Confidence 22334556789999999999998876666666666554 6799999999999864
No 195
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.71 E-value=8.8e-17 Score=172.67 Aligned_cols=110 Identities=18% Similarity=0.173 Sum_probs=86.3
Q ss_pred EEecCCCChHHHHHHHhCCccee-----eec------------CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-----VTN------------KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLD 178 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-----v~~------------~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~ 178 (409)
|+|++|+|||||+|+|++....+ +.+ ..++|.+.....+.+++.++.||||||+.+
T Consensus 15 iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~------- 87 (689)
T TIGR00484 15 ISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD------- 87 (689)
T ss_pred EECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc-------
Confidence 99999999999999997532211 111 356777777788888999999999999743
Q ss_pred HHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 179 SMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 179 ~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
+...+..+++.+|++++|+|+..+...++..++..+.. .++|+++++||+|+..
T Consensus 88 --~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 88 --FTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANR--YEVPRIAFVNKMDKTG 141 (689)
T ss_pred --hhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 12235566889999999999999887777777776665 6799999999999874
No 196
>PRK00049 elongation factor Tu; Reviewed
Probab=99.71 E-value=2.3e-16 Score=158.97 Aligned_cols=153 Identities=19% Similarity=0.192 Sum_probs=112.0
Q ss_pred EEecCCCChHHHHHHHhCCcc------ee---------eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHH
Q 015293 116 VLGKPNVGKSTLANQMIGQKL------SI---------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSM 180 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~------~~---------v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~ 180 (409)
++|++|+|||||+++|++... .. .....++|.+.....+..++.++.|+||||+. .
T Consensus 17 iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~---------~ 87 (396)
T PRK00049 17 TIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA---------D 87 (396)
T ss_pred EEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH---------H
Confidence 999999999999999987311 00 11256778887766677788899999999952 2
Q ss_pred HHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEE-EEEecCCCCChhhHH-----HHHHHHHhc---C
Q 015293 181 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPGEIA-----KKLEWYEKF---T 251 (409)
Q Consensus 181 ~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~i-lvlNK~Dl~~~~~~~-----~~~~~~~~~---~ 251 (409)
++..+...+..+|++++|+|+..+...++..++..+.. .+.|.+ +++||+|+.+..+.. ++...+... .
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~--~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG 165 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHH--cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCc
Confidence 45666677889999999999998887777777777665 578976 589999998533221 111222221 1
Q ss_pred CCceEEEcccCCCC----------CHHHHHHHHHhhCC
Q 015293 252 DVDEVIPVSAKYGH----------GVEDIRDWILTKLP 279 (409)
Q Consensus 252 ~~~~iv~iSA~~g~----------gi~~L~~~L~~~l~ 279 (409)
...+++++||++|. |+..|+++|.+.++
T Consensus 166 ~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 166 DDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred cCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 23689999999875 67899999988765
No 197
>PRK12735 elongation factor Tu; Reviewed
Probab=99.71 E-value=3.3e-16 Score=157.90 Aligned_cols=156 Identities=19% Similarity=0.187 Sum_probs=110.8
Q ss_pred eeE-EEecCCCChHHHHHHHhCC------cce-e--------eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhh
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQ------KLS-I--------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 176 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~------~~~-~--------v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 176 (409)
..+ ++|++|+|||||+++|++. ... . .....|.|.+.....+..++.++.|+||||+ .
T Consensus 13 ~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh--~---- 86 (396)
T PRK12735 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH--A---- 86 (396)
T ss_pred EEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH--H----
Confidence 334 9999999999999999862 110 0 1124567777766667777889999999994 2
Q ss_pred HhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEE-EEEecCCCCChhhHH-----HHHHHHHhc
Q 015293 177 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPGEIA-----KKLEWYEKF 250 (409)
Q Consensus 177 l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~i-lvlNK~Dl~~~~~~~-----~~~~~~~~~ 250 (409)
.+...+...+..+|++++|+|+..+...++..++..+.. .++|.+ +++||+|+....+.. +....+...
T Consensus 87 ---~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~ 161 (396)
T PRK12735 87 ---DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred ---HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHc
Confidence 245566677889999999999998877776666666554 568865 579999997533221 112222222
Q ss_pred C---CCceEEEcccCCCC----------CHHHHHHHHHhhCC
Q 015293 251 T---DVDEVIPVSAKYGH----------GVEDIRDWILTKLP 279 (409)
Q Consensus 251 ~---~~~~iv~iSA~~g~----------gi~~L~~~L~~~l~ 279 (409)
. ...+++++||++|. |+.+|++.|.+.++
T Consensus 162 ~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 162 DFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred CCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 1 23589999999984 78999999988776
No 198
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.71 E-value=1.9e-16 Score=135.41 Aligned_cols=136 Identities=24% Similarity=0.389 Sum_probs=97.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|.+++|||||+++|.+.... ...|..... .=.+|||||-.-+ ...+.........+||+|
T Consensus 6 liG~~g~GKTTL~q~L~~~~~~-----~~KTq~i~~--------~~~~IDTPGEyiE-----~~~~y~aLi~ta~dad~V 67 (143)
T PF10662_consen 6 LIGPSGSGKTTLAQALNGEEIR-----YKKTQAIEY--------YDNTIDTPGEYIE-----NPRFYHALIVTAQDADVV 67 (143)
T ss_pred EECCCCCCHHHHHHHHcCCCCC-----cCccceeEe--------cccEEECChhhee-----CHHHHHHHHHHHhhCCEE
Confidence 9999999999999999997653 222222111 1145999993211 223556666777899999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCC-ChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 274 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~-~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L 274 (409)
++|.|++.+.......+... -.+|+|=|+||+|+. +..++.....++.. .+...+|.+|+.+|+|+++|+++|
T Consensus 68 ~ll~dat~~~~~~pP~fa~~-----f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~-aG~~~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 68 LLLQDATEPRSVFPPGFASM-----FNKPVIGVITKIDLPSDDANIERAKKWLKN-AGVKEIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred EEEecCCCCCccCCchhhcc-----cCCCEEEEEECccCccchhhHHHHHHHHHH-cCCCCeEEEECCCCcCHHHHHHHH
Confidence 99999998764444444432 358999999999998 44455554455544 456678999999999999999998
Q ss_pred H
Q 015293 275 L 275 (409)
Q Consensus 275 ~ 275 (409)
.
T Consensus 142 ~ 142 (143)
T PF10662_consen 142 E 142 (143)
T ss_pred h
Confidence 5
No 199
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.70 E-value=2.6e-16 Score=133.97 Aligned_cols=149 Identities=22% Similarity=0.230 Sum_probs=95.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~--~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|++|+|||||+|+|.+..... .....+..+..... ....+..+.+|||||... ... .....+..+|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~-------~~~~~~~~~~ 70 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-EEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQER--FRS-------LRRLYYRGAD 70 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-cccccchhheeeEEEEECCEEEEEEEEecCChHH--HHh-------HHHHHhcCCC
Confidence 58999999999999999887621 11111212222222 222357899999999532 111 1244578999
Q ss_pred eEEEEeeCCCCCChHHHHH---HHHhccCCCCCCEEEEEecCCCCChhhHHHH--HHHHHhcCCCceEEEcccCCCCCHH
Q 015293 194 CIVVLVDACKAPERIDEIL---EEGVGDHKDKLPILLVLNKKDLIKPGEIAKK--LEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 194 villVvD~~~~~~~~~~~l---~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~--~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
++++|+|++.+........ .........+.|+++|+||+|+......... ..... .....+++++||.++.|+.
T Consensus 71 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~i~ 149 (157)
T cd00882 71 GIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLA-KELGVPYFETSAKTGENVE 149 (157)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHH-hhcCCcEEEEecCCCCChH
Confidence 9999999987653222211 1111112268999999999999765443322 11222 2234589999999999999
Q ss_pred HHHHHHH
Q 015293 269 DIRDWIL 275 (409)
Q Consensus 269 ~L~~~L~ 275 (409)
+++++|.
T Consensus 150 ~~~~~l~ 156 (157)
T cd00882 150 ELFEELA 156 (157)
T ss_pred HHHHHHh
Confidence 9999985
No 200
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.70 E-value=2.5e-16 Score=142.39 Aligned_cols=154 Identities=20% Similarity=0.204 Sum_probs=96.4
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
++ ++|.+|+|||||++++....+.. ....+..+.....+..+ ...+.+|||||. ..+..+.. ..+.
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~--~~~~~~~~-------~~~~ 71 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPE--EYHPTVFENYVTDCRVDGKPVQLALWDTAGQ--EEYERLRP-------LSYS 71 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCC--hhccccch-------hhcC
Confidence 44 99999999999999998655431 22223333222222323 356789999994 23222221 2357
Q ss_pred CcceEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChh----------hH-HHHHHHHHhcCCCceEE
Q 015293 191 NADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----------EI-AKKLEWYEKFTDVDEVI 257 (409)
Q Consensus 191 ~aDvillVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~----------~~-~~~~~~~~~~~~~~~iv 257 (409)
.+|++++|+|.++... .....+...++....+.|+++|+||+|+.... .. ......+.+..+..+++
T Consensus 72 ~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (187)
T cd04129 72 KAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYM 151 (187)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEE
Confidence 8999999999976542 22222333333222579999999999985311 00 01122222333445799
Q ss_pred EcccCCCCCHHHHHHHHHhhC
Q 015293 258 PVSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 258 ~iSA~~g~gi~~L~~~L~~~l 278 (409)
++||++|.|++++++++.+.+
T Consensus 152 e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 152 ECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred EccCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998655
No 201
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.70 E-value=2.2e-16 Score=163.69 Aligned_cols=113 Identities=20% Similarity=0.230 Sum_probs=80.9
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcce-----eee----------c------CCCceEEEEEEEEeCCCeeEEEEeCCCCc
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLS-----IVT----------N------KPQTTRHRILGICSGPEYQMILYDTPGII 170 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~-----~v~----------~------~~~tt~~~~~~~~~~~~~~i~liDtpG~~ 170 (409)
+.+ |+|++|+|||||+++|+..... .+. + .-+.|.......+.+++..+++|||||+.
T Consensus 11 Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~ 90 (526)
T PRK00741 11 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHE 90 (526)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCch
Confidence 344 9999999999999999732211 111 0 01122223334467788999999999953
Q ss_pred hhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 171 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
+ +...+..++..+|++|+|+|++.+.......++...+. .++|+++++||+|+..
T Consensus 91 d---------f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~--~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 91 D---------FSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRL--RDTPIFTFINKLDRDG 145 (526)
T ss_pred h---------hHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHh--cCCCEEEEEECCcccc
Confidence 2 22345566789999999999999887777777776665 6899999999999864
No 202
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.70 E-value=1.7e-16 Score=147.45 Aligned_cols=143 Identities=20% Similarity=0.196 Sum_probs=95.9
Q ss_pred EEecCCCChHHHHHHHhCCcce------------------------------eeecCCCceEEEEEEEEeCCCeeEEEEe
Q 015293 116 VLGKPNVGKSTLANQMIGQKLS------------------------------IVTNKPQTTRHRILGICSGPEYQMILYD 165 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~------------------------------~v~~~~~tt~~~~~~~~~~~~~~i~liD 165 (409)
++|++++|||||+++|+..... ......++|++.....+.+.+..+.+||
T Consensus 4 i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~liD 83 (219)
T cd01883 4 VIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFTILD 83 (219)
T ss_pred EecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEEEEE
Confidence 8999999999999999632110 0112356788888888888999999999
Q ss_pred CCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCC-------CChHHHHHHHHhccCCCCCCEEEEEecCCCCC--
Q 015293 166 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKLPILLVLNKKDLIK-- 236 (409)
Q Consensus 166 tpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~-------~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~-- 236 (409)
|||+.. +...+..++..+|++++|+|++++ ...+........... ..+|+++|+||+|+..
T Consensus 84 tpG~~~---------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiivvNK~Dl~~~~ 153 (219)
T cd01883 84 APGHRD---------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL-GVKQLIVAVNKMDDVTVN 153 (219)
T ss_pred CCChHH---------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc-CCCeEEEEEEcccccccc
Confidence 999532 223445567889999999999874 222333333333321 2368999999999973
Q ss_pred --hhhHHHHHHH----HHhcC---CCceEEEcccCCCCCHH
Q 015293 237 --PGEIAKKLEW----YEKFT---DVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 237 --~~~~~~~~~~----~~~~~---~~~~iv~iSA~~g~gi~ 268 (409)
.......... +.... ...+++++||++|.|++
T Consensus 154 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 154 WSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 2222222222 22221 12579999999999987
No 203
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.70 E-value=4.9e-16 Score=156.62 Aligned_cols=156 Identities=18% Similarity=0.185 Sum_probs=108.1
Q ss_pred eeE-EEecCCCChHHHHHHHhCC------ccee---------eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhh
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQ------KLSI---------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 176 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~------~~~~---------v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 176 (409)
..+ ++|++++|||||+++|++. .... .....|.|.+.....+..++.++.||||||+ ..
T Consensus 13 ~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh--~~--- 87 (394)
T TIGR00485 13 VNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGH--AD--- 87 (394)
T ss_pred EEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCch--HH---
Confidence 334 9999999999999999843 1110 1123678888776667777889999999994 22
Q ss_pred HhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEE-EEEecCCCCChhhHH-----HHHHHHHhc
Q 015293 177 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPGEIA-----KKLEWYEKF 250 (409)
Q Consensus 177 l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~i-lvlNK~Dl~~~~~~~-----~~~~~~~~~ 250 (409)
+...+...+..+|++++|+|+..+...++..++..+.. .+.|.+ +|+||+|+.+..+.. +....+...
T Consensus 88 ----f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~ 161 (394)
T TIGR00485 88 ----YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred ----HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhc
Confidence 33445556778999999999998877777766666655 567765 689999998643322 122222222
Q ss_pred C---CCceEEEcccCCCC--------CHHHHHHHHHhhCC
Q 015293 251 T---DVDEVIPVSAKYGH--------GVEDIRDWILTKLP 279 (409)
Q Consensus 251 ~---~~~~iv~iSA~~g~--------gi~~L~~~L~~~l~ 279 (409)
. ...+++++||.+|. ++.+|+++|.+.++
T Consensus 162 ~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~ 201 (394)
T TIGR00485 162 DFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIP 201 (394)
T ss_pred CCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCC
Confidence 1 12589999999875 45677777776554
No 204
>PRK09866 hypothetical protein; Provisional
Probab=99.70 E-value=5e-16 Score=159.38 Aligned_cols=115 Identities=20% Similarity=0.257 Sum_probs=83.0
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCCh-
Q 015293 159 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP- 237 (409)
Q Consensus 159 ~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~- 237 (409)
.+++|+||||+.......+...+.+ ++..||+|+||+|+.......+..+.+.++......|+++|+||+|+.+.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dre 305 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRN 305 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcc
Confidence 4689999999964323335555543 58899999999999887777777777777663222599999999998752
Q ss_pred ----hhHHHHHHHH--HhcCCCceEEEcccCCCCCHHHHHHHHHhh
Q 015293 238 ----GEIAKKLEWY--EKFTDVDEVIPVSAKYGHGVEDIRDWILTK 277 (409)
Q Consensus 238 ----~~~~~~~~~~--~~~~~~~~iv~iSA~~g~gi~~L~~~L~~~ 277 (409)
..+....... .....+..++|+||++|.|++.|++.|...
T Consensus 306 eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 306 SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 2233332212 223346789999999999999999999874
No 205
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=6.6e-16 Score=154.08 Aligned_cols=192 Identities=25% Similarity=0.252 Sum_probs=128.8
Q ss_pred EEecCCCChHHHHHHHhCCccee--------------eecCCCceEEEEEEEEeCCC---eeEEEEeCCCCchhhhhhHh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI--------------VTNKPQTTRHRILGICSGPE---YQMILYDTPGIIEKKIHMLD 178 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~--------------v~~~~~tt~~~~~~~~~~~~---~~i~liDtpG~~~~~~~~l~ 178 (409)
||.|...|||||..+|+.-...+ +...-|.|...+...+.+.+ +.+++|||||+.+.+
T Consensus 65 IIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs----- 139 (650)
T KOG0462|consen 65 IIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS----- 139 (650)
T ss_pred EEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc-----
Confidence 89999999999999987432211 22334555555555555444 889999999987643
Q ss_pred HHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceE
Q 015293 179 SMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEV 256 (409)
Q Consensus 179 ~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~i 256 (409)
.++...+..||.+|+|||++.+.+.++.....+.-. .+..+|.|+||+|+...+. +......+-.. ...++
T Consensus 140 ----~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe--~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~-~~~~~ 212 (650)
T KOG0462|consen 140 ----GEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE--AGLAIIPVLNKIDLPSADPERVENQLFELFDI-PPAEV 212 (650)
T ss_pred ----ceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH--cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcC-Cccce
Confidence 233445778999999999999998877554433333 6788999999999986432 22222222111 22378
Q ss_pred EEcccCCCCCHHHHHHHHHhhCCCCCCCCCCccccCchHHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCC
Q 015293 257 IPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTA 332 (409)
Q Consensus 257 v~iSA~~g~gi~~L~~~L~~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~~~~eipys~~v~v~~~~~~~~~ 332 (409)
+.+||++|.|+++|+++|++.+|+.. ...+.|.|.++-+ ..+.+-.|-...+++..+..+.+.
T Consensus 213 i~vSAK~G~~v~~lL~AII~rVPpP~------~~~d~plr~Lifd-------s~yD~y~G~I~~vrv~~G~vrkGd 275 (650)
T KOG0462|consen 213 IYVSAKTGLNVEELLEAIIRRVPPPK------GIRDAPLRMLIFD-------SEYDEYRGVIALVRVVDGVVRKGD 275 (650)
T ss_pred EEEEeccCccHHHHHHHHHhhCCCCC------CCCCcchHHHhhh-------hhhhhhcceEEEEEEeeeeeecCC
Confidence 99999999999999999999998433 2344565544332 223444555667777777766443
No 206
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.69 E-value=1.5e-16 Score=138.43 Aligned_cols=154 Identities=21% Similarity=0.259 Sum_probs=108.0
Q ss_pred EEecCCCChHHHHHHHhCCcceee-ecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v-~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|.+|||||||+|+++..++... -.+.|.........+...-..+.+|||+| ++.+.+|...+ ++.||+
T Consensus 14 iLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAG--QERFqsLg~aF-------YRgaDc 84 (210)
T KOG0394|consen 14 ILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAG--QERFQSLGVAF-------YRGADC 84 (210)
T ss_pred EeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEeccc--HHHhhhcccce-------ecCCce
Confidence 999999999999999998886532 12233222222333444446789999999 77888776544 789999
Q ss_pred EEEEeeCCCCC--ChHHHHHHHHhcc----CCCCCCEEEEEecCCCCChh----hHHHHHHHHHhcCCCceEEEcccCCC
Q 015293 195 IVVLVDACKAP--ERIDEILEEGVGD----HKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDVDEVIPVSAKYG 264 (409)
Q Consensus 195 illVvD~~~~~--~~~~~~l~~~l~~----~~~~~p~ilvlNK~Dl~~~~----~~~~~~~~~~~~~~~~~iv~iSA~~g 264 (409)
+++|+|+..+. +....|-.+.+.. .+..-|+||++||+|+.... .......|....+ ..|++.+||+.+
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~g-nipyfEtSAK~~ 163 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKG-NIPYFETSAKEA 163 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcC-CceeEEeccccc
Confidence 99999988654 3333333333322 12467999999999996522 2233455555544 459999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 015293 265 HGVEDIRDWILTKLP 279 (409)
Q Consensus 265 ~gi~~L~~~L~~~l~ 279 (409)
.||++.|..+...+-
T Consensus 164 ~NV~~AFe~ia~~aL 178 (210)
T KOG0394|consen 164 TNVDEAFEEIARRAL 178 (210)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999887654
No 207
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.69 E-value=3.4e-16 Score=162.25 Aligned_cols=109 Identities=21% Similarity=0.248 Sum_probs=80.2
Q ss_pred EEecCCCChHHHHHHHhCCccee-----ee----------c------CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-----VT----------N------KPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 174 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-----v~----------~------~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~ 174 (409)
|+|++|+|||||+++|+.....+ +. + .-+.|.......+.+++.++++|||||+.+
T Consensus 16 iiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~d--- 92 (527)
T TIGR00503 16 IISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHED--- 92 (527)
T ss_pred EEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChhh---
Confidence 99999999999999986322111 11 0 012233333445678889999999999532
Q ss_pred hhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCC
Q 015293 175 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 235 (409)
Q Consensus 175 ~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~ 235 (409)
+...+..++..+|++|+|+|++.+.......+++.++. .++|+++++||+|+.
T Consensus 93 ------f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~--~~~PiivviNKiD~~ 145 (527)
T TIGR00503 93 ------FSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL--RDTPIFTFMNKLDRD 145 (527)
T ss_pred ------HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEECcccc
Confidence 33456667889999999999998887777777776665 679999999999985
No 208
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.68 E-value=1.1e-15 Score=141.32 Aligned_cols=167 Identities=19% Similarity=0.216 Sum_probs=104.9
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcce-eeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLS-IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~-~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
.++ ++|.+|||||||+++++...+. ...++.+............+...+.+|||||. ..+..+. ..++.
T Consensus 10 ~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~--~~~~~~~-------~~~~~ 80 (215)
T PTZ00132 10 FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ--EKFGGLR-------DGYYI 80 (215)
T ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCc--hhhhhhh-------HHHhc
Confidence 345 9999999999999876654432 12233333333333333445678999999994 3333332 23467
Q ss_pred CcceEEEEeeCCCCCCh--HHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 191 NADCIVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 191 ~aDvillVvD~~~~~~~--~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
.+|++++|+|.++...- ...++....+ ...+.|+++++||+|+.............. ..+ ..++++||++|.|++
T Consensus 81 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~-~~~-~~~~e~Sa~~~~~v~ 157 (215)
T PTZ00132 81 KGQCAIIMFDVTSRITYKNVPNWHRDIVR-VCENIPIVLVGNKVDVKDRQVKARQITFHR-KKN-LQYYDISAKSNYNFE 157 (215)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHH-hCCCCCEEEEEECccCccccCCHHHHHHHH-HcC-CEEEEEeCCCCCCHH
Confidence 89999999999865422 2223222221 125789999999999864321122222222 222 368999999999999
Q ss_pred HHHHHHHhhCCCCCCCCCCcccc
Q 015293 269 DIRDWILTKLPLGPAYYPKDIVS 291 (409)
Q Consensus 269 ~L~~~L~~~l~~~~~~~~~~~~t 291 (409)
+++.+|.+.+...|..+-.+..+
T Consensus 158 ~~f~~ia~~l~~~p~~~~ldEp~ 180 (215)
T PTZ00132 158 KPFLWLARRLTNDPNLVFVGAPA 180 (215)
T ss_pred HHHHHHHHHHhhcccceecCCcc
Confidence 99999998887666654434333
No 209
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.68 E-value=8.3e-16 Score=147.11 Aligned_cols=110 Identities=25% Similarity=0.273 Sum_probs=78.9
Q ss_pred EEecCCCChHHHHHHHhCCcceee---ecCC--------------CceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV---TNKP--------------QTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLD 178 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v---~~~~--------------~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~ 178 (409)
++|++|+|||||+|+|++....+. +... +.|.......+.+++..+.+|||||...
T Consensus 4 ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~------- 76 (268)
T cd04170 4 LVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYAD------- 76 (268)
T ss_pred EECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHH-------
Confidence 899999999999999985432210 0011 2222333445667888999999999532
Q ss_pred HHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 179 SMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 179 ~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
+...+..++..+|++++|+|++.+.......++..+.. .++|+++++||+|+..
T Consensus 77 --f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~--~~~p~iivvNK~D~~~ 130 (268)
T cd04170 77 --FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADE--AGIPRIIFINKMDRER 130 (268)
T ss_pred --HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECCccCC
Confidence 23445566789999999999998877666666655555 6789999999999864
No 210
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.68 E-value=6.2e-16 Score=136.25 Aligned_cols=145 Identities=14% Similarity=0.158 Sum_probs=92.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+.+++...+... .+.+ .......+..++ ..+.+|||+|.. . ..++..+|
T Consensus 5 vvG~~gvGKTsli~~~~~~~f~~~--~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~--~------------~~~~~~~~ 67 (158)
T cd04103 5 IVGNLQSGKSALVHRYLTGSYVQL--ESPE-GGRFKKEVLVDGQSHLLLIRDEGGAP--D------------AQFASWVD 67 (158)
T ss_pred EECCCCCcHHHHHHHHHhCCCCCC--CCCC-ccceEEEEEECCEEEEEEEEECCCCC--c------------hhHHhcCC
Confidence 899999999999999887665321 2211 111122334444 568899999942 1 01246799
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccC-CCCCCEEEEEecCCCCC--hhhHHH-HHHHHHhcCCCceEEEcccCCCCCH
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDH-KDKLPILLVLNKKDLIK--PGEIAK-KLEWYEKFTDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~--~~~~~~-~~~~~~~~~~~~~iv~iSA~~g~gi 267 (409)
++++|+|.++... ....++....... ..+.|+++|+||+|+.. ...+.. ....+.+.....++++|||++|.||
T Consensus 68 ~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i 147 (158)
T cd04103 68 AVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNV 147 (158)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCH
Confidence 9999999988652 2233333332221 14689999999999842 222221 1122222222357899999999999
Q ss_pred HHHHHHHHhh
Q 015293 268 EDIRDWILTK 277 (409)
Q Consensus 268 ~~L~~~L~~~ 277 (409)
+++|..+.+.
T Consensus 148 ~~~f~~~~~~ 157 (158)
T cd04103 148 ERVFQEAAQK 157 (158)
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 211
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.68 E-value=5e-17 Score=161.27 Aligned_cols=151 Identities=19% Similarity=0.159 Sum_probs=89.4
Q ss_pred Cccccchhhh--hhhhcCceEEeeccccchhhhhcccccchhhhhhhhhhccc-cccCCCCCCCCCCcC--Chhhhhhhc
Q 015293 13 SLFPHYSTLT--AYREIKFGFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSN-QREMDLDDGDEMEFD--DASSFLSLS 87 (409)
Q Consensus 13 ~~~~~~~~~~--~f~~~~i~~~f~sa~~a~e~~e~~~~~~~e~~~~~~~~~~~-~~e~d~~~~e~~~~~--~~~~~~~~~ 87 (409)
-|+||.+-.| ||.++||.|.||||.+|.+..+.+...+.-..-+....... ....+ .++++..+ +..++..
T Consensus 217 Ll~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~--~d~~i~r~~~d~~e~~~-- 292 (562)
T KOG1424|consen 217 LLPPEQRVAWAEYFRQNNIPVVFFSALAATEQLESKVLKEDRRSLDGVSRALGAIFVGE--VDLKIARDKGDGEEIED-- 292 (562)
T ss_pred cCCHHHHHHHHHHHHhcCceEEEEecccccccccccchhhhhhcccchhhhcccccccc--chhhhhhhcccccchhh--
Confidence 5899999998 99999999999999998887766322211111110000000 00000 00000000 0000000
Q ss_pred cCCCccccCCCcccccccccccCCC--eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEE
Q 015293 88 EKPDRNMASPDDYEIEEFDYASHPN--HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILY 164 (409)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~li 164 (409)
+.. ..+.+. .....-.+... -.| +||+|||||||+||+|.|.+...||.+||.|+++++..++ ..+.||
T Consensus 293 --v~~-~~~~s~--~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls---~~v~LC 364 (562)
T KOG1424|consen 293 --VEQ-LRLISA--MEPTPTGERYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS---PSVCLC 364 (562)
T ss_pred --HHh-hhhhhc--cccCCCCcCCCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC---CCceec
Confidence 000 000000 00000001111 223 9999999999999999999999999999999999998887 678999
Q ss_pred eCCCCchhhhh
Q 015293 165 DTPGIIEKKIH 175 (409)
Q Consensus 165 DtpG~~~~~~~ 175 (409)
||||++-.++.
T Consensus 365 DCPGLVfPSf~ 375 (562)
T KOG1424|consen 365 DCPGLVFPSFS 375 (562)
T ss_pred CCCCccccCCC
Confidence 99999865544
No 212
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.68 E-value=7.8e-16 Score=140.35 Aligned_cols=150 Identities=19% Similarity=0.195 Sum_probs=92.7
Q ss_pred EEecCCCChHHHHH-HHhCCcce---eeecCCCceE--EEEE-E---------EEeCCCeeEEEEeCCCCchhhhhhHhH
Q 015293 116 VLGKPNVGKSTLAN-QMIGQKLS---IVTNKPQTTR--HRIL-G---------ICSGPEYQMILYDTPGIIEKKIHMLDS 179 (409)
Q Consensus 116 ivG~~n~GKSsLln-~l~~~~~~---~v~~~~~tt~--~~~~-~---------~~~~~~~~i~liDtpG~~~~~~~~l~~ 179 (409)
++|.+|||||||+. ++.+..+. ....+..|.. +... . .+......+.+|||+|.. . .+
T Consensus 7 ~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~--~--~~-- 80 (195)
T cd01873 7 VVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDH--D--KD-- 80 (195)
T ss_pred EECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCCh--h--hh--
Confidence 99999999999996 55443321 1122223321 1111 1 223345689999999952 1 11
Q ss_pred HHHHHHHHhhcCcceEEEEeeCCCCCCh--HHHHHHHHhccCCCCCCEEEEEecCCCCCh-------------------h
Q 015293 180 MMMKNVRSAGINADCIVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKP-------------------G 238 (409)
Q Consensus 180 ~~~~~~~~~~~~aDvillVvD~~~~~~~--~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~-------------------~ 238 (409)
...+++.||++++|+|+++...- ....+.+.++....+.|+++|+||+|+... .
T Consensus 81 -----~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
T cd01873 81 -----RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNAD 155 (195)
T ss_pred -----hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCC
Confidence 12357899999999999876532 222233333332357899999999998531 1
Q ss_pred hH-HHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHHhh
Q 015293 239 EI-AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 277 (409)
Q Consensus 239 ~~-~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~~~ 277 (409)
.+ ......+....+. ++++|||++|.||+++|+.+.+.
T Consensus 156 ~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 156 ILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred ccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 11 1112223333344 79999999999999999998764
No 213
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.68 E-value=1.1e-15 Score=154.63 Aligned_cols=154 Identities=19% Similarity=0.235 Sum_probs=98.0
Q ss_pred EEecCCCChHHHHHHHhCCccee--eecCCCceEEEEEE--------------------EEeC------CCeeEEEEeCC
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILG--------------------ICSG------PEYQMILYDTP 167 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~--v~~~~~tt~~~~~~--------------------~~~~------~~~~i~liDtp 167 (409)
++|++++|||||+++|.+..... .....+.|...... .+.. .+..+.+||||
T Consensus 9 iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtP 88 (406)
T TIGR03680 9 MVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSFVDAP 88 (406)
T ss_pred EEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEEEECC
Confidence 99999999999999997642110 01111222211100 0011 14679999999
Q ss_pred CCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCC-ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHH--
Q 015293 168 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-- 244 (409)
Q Consensus 168 G~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~-~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~-- 244 (409)
|+ +. +...+...+..+|++++|+|++++. ..+....+..+... ...|+++|+||+|+.+........
T Consensus 89 Gh--~~-------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 89 GH--ET-------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred CH--HH-------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 94 32 3344556677899999999999765 44444444444331 235799999999998654332211
Q ss_pred --HHHHhc-CCCceEEEcccCCCCCHHHHHHHHHhhCC
Q 015293 245 --EWYEKF-TDVDEVIPVSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 245 --~~~~~~-~~~~~iv~iSA~~g~gi~~L~~~L~~~l~ 279 (409)
..+... ....+++++||++|.|+++|+++|...++
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 222111 11347999999999999999999998776
No 214
>PLN03126 Elongation factor Tu; Provisional
Probab=99.67 E-value=8.5e-16 Score=157.44 Aligned_cols=152 Identities=18% Similarity=0.190 Sum_probs=107.7
Q ss_pred EEecCCCChHHHHHHHhCCccee---------------eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI---------------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSM 180 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~---------------v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~ 180 (409)
++|++|+|||||+++|++....+ .....+.|.+.....+..++.++.|+||||+. .
T Consensus 86 iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~--~------- 156 (478)
T PLN03126 86 TIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA--D------- 156 (478)
T ss_pred EECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH--H-------
Confidence 99999999999999999633221 12234566666666677788899999999943 2
Q ss_pred HHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCC-EEEEEecCCCCChhhHHH-----HHHHHHhc---C
Q 015293 181 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAK-----KLEWYEKF---T 251 (409)
Q Consensus 181 ~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilvlNK~Dl~~~~~~~~-----~~~~~~~~---~ 251 (409)
+...+...+..+|++++|+|+..+...++..++..+.. .++| +|+++||+|+.+..+..+ +...+... .
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~ 234 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ--VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPG 234 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 44556666789999999999999888887777776665 5778 778999999986433222 12222221 1
Q ss_pred CCceEEEcccCCCCC------------------HHHHHHHHHhhC
Q 015293 252 DVDEVIPVSAKYGHG------------------VEDIRDWILTKL 278 (409)
Q Consensus 252 ~~~~iv~iSA~~g~g------------------i~~L~~~L~~~l 278 (409)
...+++++||.+|.+ +..|++.|.+..
T Consensus 235 ~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~ 279 (478)
T PLN03126 235 DDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYI 279 (478)
T ss_pred CcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhC
Confidence 245899999998843 456777777654
No 215
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.66 E-value=1.2e-15 Score=155.42 Aligned_cols=144 Identities=21% Similarity=0.244 Sum_probs=97.4
Q ss_pred EEecCCCChHHHHHHHhCCccee------------------------e------ecCCCceEEEEEEEEeCCCeeEEEEe
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI------------------------V------TNKPQTTRHRILGICSGPEYQMILYD 165 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~------------------------v------~~~~~tt~~~~~~~~~~~~~~i~liD 165 (409)
++|++++|||||+++|+.....+ + ....+.|.+.....+..++..+.|||
T Consensus 12 i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~i~iiD 91 (426)
T TIGR00483 12 FIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYEVTIVD 91 (426)
T ss_pred EEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeEEEEEE
Confidence 99999999999999998522110 0 12347788888888888899999999
Q ss_pred CCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCC---CChHHHHHHHHhccCCCCCCEEEEEecCCCCC--hhhH
Q 015293 166 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA---PERIDEILEEGVGDHKDKLPILLVLNKKDLIK--PGEI 240 (409)
Q Consensus 166 tpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~---~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~--~~~~ 240 (409)
||| +.. +...+...+..+|++++|+|++++ ...+..+.....+.. ...|+++|+||+|+.. ....
T Consensus 92 tpG--h~~-------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 92 CPG--HRD-------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CCC--HHH-------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhccCccHHHH
Confidence 999 332 334455567899999999999987 333333322223321 2357999999999974 2222
Q ss_pred H----HHHHHHHhcC---CCceEEEcccCCCCCHHH
Q 015293 241 A----KKLEWYEKFT---DVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 241 ~----~~~~~~~~~~---~~~~iv~iSA~~g~gi~~ 269 (409)
. +....+.... ...+++++||++|.|+.+
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 1 1122222221 235799999999999986
No 216
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1e-15 Score=133.57 Aligned_cols=156 Identities=21% Similarity=0.275 Sum_probs=108.9
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeec-CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~-~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
.++ ++|..|||||+|+-+++.+.+..+.+ +.|...-.....+.....++.+|||+| ++.+.++ ..++++
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaG--qe~frsv-------~~syYr 77 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAG--QESFRSV-------TRSYYR 77 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCC--cHHHHHH-------HHHHhc
Confidence 344 99999999999999999998865543 122211122223444556789999999 5555444 556789
Q ss_pred CcceEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCceEEEcccCCCCCH
Q 015293 191 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 191 ~aDvillVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~-~~~~~~~~~~~~~iv~iSA~~g~gi 267 (409)
.|-.+|+|+|.+... ...+.|+.+..+....+.-++|++||+||....++.. .-+.+.+..++ .++.+||++++|+
T Consensus 78 ~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgL-ifmETSakt~~~V 156 (216)
T KOG0098|consen 78 GAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGL-IFMETSAKTAENV 156 (216)
T ss_pred cCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCc-eeehhhhhhhhhH
Confidence 999999999998764 4556677665554347888999999999986554432 22333333444 5679999999999
Q ss_pred HHHHHHHHhhC
Q 015293 268 EDIRDWILTKL 278 (409)
Q Consensus 268 ~~L~~~L~~~l 278 (409)
++.|......+
T Consensus 157 EEaF~nta~~I 167 (216)
T KOG0098|consen 157 EEAFINTAKEI 167 (216)
T ss_pred HHHHHHHHHHH
Confidence 99887765433
No 217
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.66 E-value=1.6e-15 Score=133.18 Aligned_cols=150 Identities=27% Similarity=0.371 Sum_probs=99.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCce-EEEEEEEEeC--CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt-~~~~~~~~~~--~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++|.++||||||++++.+..+. .....|. .+.....+.. ....+.+||++| +..+..+.. ..+..+
T Consensus 4 vvG~~~vGKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g--~~~~~~~~~-------~~~~~~ 72 (162)
T PF00071_consen 4 VVGDSGVGKTSLINRLINGEFP--ENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSG--QERFDSLRD-------IFYRNS 72 (162)
T ss_dssp EEESTTSSHHHHHHHHHHSSTT--SSSETTSSEEEEEEEEEETTEEEEEEEEEETT--SGGGHHHHH-------HHHTTE
T ss_pred EECCCCCCHHHHHHHHHhhccc--cccccccccccccccccccccccccccccccc--ccccccccc-------cccccc
Confidence 8999999999999999987754 2222232 3443333333 345689999999 444443332 337899
Q ss_pred ceEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 193 DCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 193 DvillVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
|++++|+|.++.. .....|+...........|++||+||.|+..... ..+...+... .+ .+++.+||+++.|+.
T Consensus 73 ~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~-~~-~~~~e~Sa~~~~~v~ 150 (162)
T PF00071_consen 73 DAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKE-LG-VPYFEVSAKNGENVK 150 (162)
T ss_dssp SEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHH-TT-SEEEEEBTTTTTTHH
T ss_pred ccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHH-hC-CEEEEEECCCCCCHH
Confidence 9999999997653 2233333332222223689999999999875332 2222333333 34 689999999999999
Q ss_pred HHHHHHHhhC
Q 015293 269 DIRDWILTKL 278 (409)
Q Consensus 269 ~L~~~L~~~l 278 (409)
+++..+++.+
T Consensus 151 ~~f~~~i~~i 160 (162)
T PF00071_consen 151 EIFQELIRKI 160 (162)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988653
No 218
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.66 E-value=1.2e-15 Score=154.36 Aligned_cols=144 Identities=25% Similarity=0.242 Sum_probs=98.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeee--------------------------------cCCCceEEEEEEEEeCCCeeEEE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVT--------------------------------NKPQTTRHRILGICSGPEYQMIL 163 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~--------------------------------~~~~tt~~~~~~~~~~~~~~i~l 163 (409)
++|++++|||||+++|+.....+.. ..-+.|.+.....+.+++.++.|
T Consensus 5 ~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~~~l 84 (406)
T TIGR02034 5 TCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRKFIV 84 (406)
T ss_pred EECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeEEEE
Confidence 8999999999999999744322111 11245577767777888899999
Q ss_pred EeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HH
Q 015293 164 YDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IA 241 (409)
Q Consensus 164 iDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~ 241 (409)
+||||+ .. +...+...+..+|++++|+|+..+...++...+..+... ...++++|+||+|+..... +.
T Consensus 85 iDtPGh--~~-------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~~~iivviNK~D~~~~~~~~~~ 154 (406)
T TIGR02034 85 ADTPGH--EQ-------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GIRHVVLAVNKMDLVDYDEEVFE 154 (406)
T ss_pred EeCCCH--HH-------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CCCcEEEEEEecccccchHHHHH
Confidence 999994 22 334445567899999999999988876665555544442 2346889999999975221 22
Q ss_pred HHHHHHH---hcCCC--ceEEEcccCCCCCHHH
Q 015293 242 KKLEWYE---KFTDV--DEVIPVSAKYGHGVED 269 (409)
Q Consensus 242 ~~~~~~~---~~~~~--~~iv~iSA~~g~gi~~ 269 (409)
.....+. ...++ .+++++||++|+|+++
T Consensus 155 ~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 155 NIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 2222221 11222 4799999999999985
No 219
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.65 E-value=2.7e-15 Score=151.72 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=100.9
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcce--eeecCCCceEEEEEEEEeC---------------------C-----CeeEEE
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSG---------------------P-----EYQMIL 163 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~--~v~~~~~tt~~~~~~~~~~---------------------~-----~~~i~l 163 (409)
..+ ++|+.++|||||+.+|.+.... ......+.|.+.......+ + ...+.|
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 89 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSF 89 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEEE
Confidence 345 9999999999999999764211 1111223343322111000 0 257999
Q ss_pred EeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCC-ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHH
Q 015293 164 YDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 242 (409)
Q Consensus 164 iDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~-~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~ 242 (409)
||||| +.. +...+...+..+|++++|+|++++. .......+..+... ...|+++|+||+|+.+......
T Consensus 90 iDtPG--~~~-------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~-~i~~iiVVlNK~Dl~~~~~~~~ 159 (411)
T PRK04000 90 VDAPG--HET-------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII-GIKNIVIVQNKIDLVSKERALE 159 (411)
T ss_pred EECCC--HHH-------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEEeeccccchhHHH
Confidence 99999 322 3445566677899999999999875 44444444444331 2347999999999986543322
Q ss_pred ----HHHHHHh-cCCCceEEEcccCCCCCHHHHHHHHHhhCCC
Q 015293 243 ----KLEWYEK-FTDVDEVIPVSAKYGHGVEDIRDWILTKLPL 280 (409)
Q Consensus 243 ----~~~~~~~-~~~~~~iv~iSA~~g~gi~~L~~~L~~~l~~ 280 (409)
....+.. .....+++++||++|.|+++|+++|.+.++.
T Consensus 160 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 160 NYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 1222211 1123579999999999999999999987753
No 220
>PRK13351 elongation factor G; Reviewed
Probab=99.65 E-value=1.2e-15 Score=164.27 Aligned_cols=110 Identities=25% Similarity=0.304 Sum_probs=80.8
Q ss_pred EEecCCCChHHHHHHHhCCccee-----e------ec------CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-----V------TN------KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLD 178 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-----v------~~------~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~ 178 (409)
|+|++|+|||||+++|+.....+ + .+ ..+.|.......+.+.+..+.+|||||+.+
T Consensus 13 iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d------- 85 (687)
T PRK13351 13 ILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID------- 85 (687)
T ss_pred EECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH-------
Confidence 99999999999999998532110 0 11 123344444445667889999999999643
Q ss_pred HHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 179 SMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 179 ~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
+...+..+++.+|++++|+|++.+.......++..+.. .++|+++++||+|+..
T Consensus 86 --f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~--~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 86 --FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADR--YGIPRLIFINKMDRVG 139 (687)
T ss_pred --HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEECCCCCC
Confidence 23345667889999999999998887666666666655 6799999999999875
No 221
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.65 E-value=1.5e-15 Score=156.05 Aligned_cols=145 Identities=21% Similarity=0.216 Sum_probs=97.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeec--------------------------------CCCceEEEEEEEEeCCCeeEEE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTN--------------------------------KPQTTRHRILGICSGPEYQMIL 163 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~--------------------------------~~~tt~~~~~~~~~~~~~~i~l 163 (409)
++|++|+|||||+++|+.....+... .-|.|.+.....+..++.++.|
T Consensus 32 iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~~~i~~ 111 (474)
T PRK05124 32 TCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFII 111 (474)
T ss_pred EECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCCcEEEE
Confidence 99999999999999998654332210 1233456656667788889999
Q ss_pred EeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChh--hHH
Q 015293 164 YDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIA 241 (409)
Q Consensus 164 iDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~--~~~ 241 (409)
+||||+ .. +...+...+..+|++++|+|+..+...++...+.++... ...|+|+|+||+|+.... .+.
T Consensus 112 iDTPGh--~~-------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-g~~~iIvvvNKiD~~~~~~~~~~ 181 (474)
T PRK05124 112 ADTPGH--EQ-------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLL-GIKHLVVAVNKMDLVDYSEEVFE 181 (474)
T ss_pred EECCCc--HH-------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHh-CCCceEEEEEeeccccchhHHHH
Confidence 999994 22 333445557899999999999988755544433333332 235789999999997422 122
Q ss_pred HHHHHHH----hc--CCCceEEEcccCCCCCHHHH
Q 015293 242 KKLEWYE----KF--TDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 242 ~~~~~~~----~~--~~~~~iv~iSA~~g~gi~~L 270 (409)
.....+. .. ....+++++||++|.|++++
T Consensus 182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 2222221 11 12468999999999999764
No 222
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2.4e-15 Score=134.40 Aligned_cols=152 Identities=18% Similarity=0.192 Sum_probs=104.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCc-eEEEEEEEEeC--CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQT-TRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~t-t~~~~~~~~~~--~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++|.+|||||+++.++....+. +....| -.|+....+.. ....+.+|||+| ++.+.. .+.++++.|
T Consensus 17 liGDs~vGKt~~l~rf~d~~f~--~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaG--Qerf~t-------i~~sYyrgA 85 (207)
T KOG0078|consen 17 LIGDSGVGKTCLLLRFSDDSFN--TSFISTIGIDFKIKTIELDGKKIKLQIWDTAG--QERFRT-------ITTAYYRGA 85 (207)
T ss_pred EECCCCCchhHhhhhhhhccCc--CCccceEEEEEEEEEEEeCCeEEEEEEEEccc--chhHHH-------HHHHHHhhc
Confidence 9999999999999999887764 222222 12333333333 345789999999 655443 466779999
Q ss_pred ceEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 193 DCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 193 DvillVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~-~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
+.+++|+|.++.. +....|+...-.......|.+||+||+|+.....+.. .-+.+....+. .++++||++|.||++
T Consensus 86 ~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~-~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 86 MGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGI-KFFETSAKTNFNIEE 164 (207)
T ss_pred CeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCC-eEEEccccCCCCHHH
Confidence 9999999998754 3344444333222235899999999999976443322 22233333343 789999999999999
Q ss_pred HHHHHHhhCC
Q 015293 270 IRDWILTKLP 279 (409)
Q Consensus 270 L~~~L~~~l~ 279 (409)
.|-.|...+.
T Consensus 165 aF~~La~~i~ 174 (207)
T KOG0078|consen 165 AFLSLARDIL 174 (207)
T ss_pred HHHHHHHHHH
Confidence 9998887664
No 223
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.63 E-value=1.9e-15 Score=160.97 Aligned_cols=144 Identities=24% Similarity=0.249 Sum_probs=97.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeec----------CCC----------------------ceEEEEEEEEeCCCeeEEE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTN----------KPQ----------------------TTRHRILGICSGPEYQMIL 163 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~----------~~~----------------------tt~~~~~~~~~~~~~~i~l 163 (409)
++|++|+|||||+|+|+.....+++. ..| .|.+.....+..++.++.|
T Consensus 29 iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~~~~l 108 (632)
T PRK05506 29 TCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKRKFIV 108 (632)
T ss_pred EECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCceEEE
Confidence 99999999999999999765443311 233 3445555567778889999
Q ss_pred EeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC--hhhHH
Q 015293 164 YDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK--PGEIA 241 (409)
Q Consensus 164 iDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~--~~~~~ 241 (409)
+||||+. . +.......+..+|++++|+|+..+...++.....++... ..+|+++|+||+|+.. .....
T Consensus 109 iDtPG~~--~-------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~~~iivvvNK~D~~~~~~~~~~ 178 (632)
T PRK05506 109 ADTPGHE--Q-------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GIRHVVLAVNKMDLVDYDQEVFD 178 (632)
T ss_pred EECCChH--H-------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CCCeEEEEEEecccccchhHHHH
Confidence 9999942 2 233344457899999999999988766554444444431 2367889999999974 22222
Q ss_pred HHHHHHH---hcCCC--ceEEEcccCCCCCHHH
Q 015293 242 KKLEWYE---KFTDV--DEVIPVSAKYGHGVED 269 (409)
Q Consensus 242 ~~~~~~~---~~~~~--~~iv~iSA~~g~gi~~ 269 (409)
.....+. ...++ .+++++||++|.|+.+
T Consensus 179 ~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 179 EIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 2222221 12233 4689999999999974
No 224
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.62 E-value=9.8e-15 Score=135.51 Aligned_cols=109 Identities=25% Similarity=0.327 Sum_probs=76.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceE---------------EE--EEEEEe--------CCCeeEEEEeCCCCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR---------------HR--ILGICS--------GPEYQMILYDTPGII 170 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~---------------~~--~~~~~~--------~~~~~i~liDtpG~~ 170 (409)
++|++++|||||+++|+.....+.....++++ .. ....+. ..+..+.||||||+.
T Consensus 5 iiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTPG~~ 84 (222)
T cd01885 5 IIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSPGHV 84 (222)
T ss_pred EECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCCCcc
Confidence 89999999999999998644321111112221 11 111222 126789999999964
Q ss_pred hhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCC
Q 015293 171 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 235 (409)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~ 235 (409)
+ +...+..++..+|++++|+|+..+...+...++..... .++|+++|+||+|+.
T Consensus 85 ~---------f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 85 D---------FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred c---------cHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCcc
Confidence 3 33456677899999999999999887777666665544 568999999999986
No 225
>PRK12740 elongation factor G; Reviewed
Probab=99.62 E-value=1.2e-14 Score=156.02 Aligned_cols=109 Identities=23% Similarity=0.245 Sum_probs=80.2
Q ss_pred EecCCCChHHHHHHHhCCcceee-----------ec------CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhH
Q 015293 117 LGKPNVGKSTLANQMIGQKLSIV-----------TN------KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDS 179 (409)
Q Consensus 117 vG~~n~GKSsLln~l~~~~~~~v-----------~~------~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~ 179 (409)
+|++|+|||||+++|+.....+. .+ ..+.|.......+.+++..+.+|||||+..
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~-------- 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD-------- 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH--------
Confidence 59999999999999965432211 11 134455555566778889999999999532
Q ss_pred HHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 180 MMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 180 ~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
+...+..++..+|++++|+|++.+.......++..+.. .++|+++|+||+|+..
T Consensus 73 -~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~--~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 73 -FTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEK--YGVPRIIFVNKMDRAG 126 (668)
T ss_pred -HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 23345566789999999999998877666666665555 6789999999999864
No 226
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.62 E-value=1.3e-14 Score=124.17 Aligned_cols=150 Identities=23% Similarity=0.327 Sum_probs=105.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|..|+||||++++|.+.....+++ |.-+....+..++.++.+||..| +.. +.+-+..++..+|++
T Consensus 21 iLGLdNsGKTti~~kl~~~~~~~i~p----t~gf~Iktl~~~~~~L~iwDvGG--q~~-------lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 21 ILGLDNSGKTTIVKKLLGEDTDTISP----TLGFQIKTLEYKGYTLNIWDVGG--QKT-------LRSYWKNYFESTDGL 87 (185)
T ss_pred EEecCCCCchhHHHHhcCCCccccCC----ccceeeEEEEecceEEEEEEcCC--cch-------hHHHHHHhhhccCeE
Confidence 99999999999999999988544444 33344555667889999999999 433 345577889999999
Q ss_pred EEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCCh---hhHHHHH--HHHHhcCCCceEEEcccCCCCCH
Q 015293 196 VVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKP---GEIAKKL--EWYEKFTDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 196 llVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~---~~~~~~~--~~~~~~~~~~~iv~iSA~~g~gi 267 (409)
|||+|.++.. ++....+..++..- -.+.|++|+.||.|+... .++.... +.+.+ ..-++++-|||.+|+++
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~k-s~~~~l~~cs~~tge~l 166 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAK-SHHWRLVKCSAVTGEDL 166 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhcc-ccCceEEEEeccccccH
Confidence 9999997754 22222333333221 146899999999999743 3333222 22211 23458999999999999
Q ss_pred HHHHHHHHhhCC
Q 015293 268 EDIRDWILTKLP 279 (409)
Q Consensus 268 ~~L~~~L~~~l~ 279 (409)
.+=++||...+.
T Consensus 167 ~~gidWL~~~l~ 178 (185)
T KOG0073|consen 167 LEGIDWLCDDLM 178 (185)
T ss_pred HHHHHHHHHHHH
Confidence 999999886553
No 227
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.62 E-value=8.5e-15 Score=149.16 Aligned_cols=155 Identities=22% Similarity=0.337 Sum_probs=102.0
Q ss_pred EEecCCCChHHHHHHHhCCcceee--ecCCCceEEEEEE---------------------------EEeC------CCee
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILG---------------------------ICSG------PEYQ 160 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v--~~~~~tt~~~~~~---------------------------~~~~------~~~~ 160 (409)
++|+.++|||||+.+|+|...... ...-|.|.+.... .+.. -...
T Consensus 39 ~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (460)
T PTZ00327 39 TIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMTLKRH 118 (460)
T ss_pred EEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccccccce
Confidence 999999999999999997542210 1111222111000 0000 0247
Q ss_pred EEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCC-CChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh
Q 015293 161 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 239 (409)
Q Consensus 161 i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~-~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~ 239 (409)
+.|+||||+ + .+.+.+...+..+|++++|+|+..+ ...++.+.+..+..+ .-.|+|+|+||+|+.+...
T Consensus 119 i~~IDtPGH--~-------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l-gi~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 119 VSFVDCPGH--D-------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM-KLKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred EeeeeCCCH--H-------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc-CCCcEEEEEecccccCHHH
Confidence 899999993 2 2566677778899999999999975 455544444443331 2357899999999986544
Q ss_pred HHHHHHHHHh-----cCCCceEEEcccCCCCCHHHHHHHHHhhCCC
Q 015293 240 IAKKLEWYEK-----FTDVDEVIPVSAKYGHGVEDIRDWILTKLPL 280 (409)
Q Consensus 240 ~~~~~~~~~~-----~~~~~~iv~iSA~~g~gi~~L~~~L~~~l~~ 280 (409)
.......+.. .....+++++||++|.|++.|+++|.+.++.
T Consensus 189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 4333333322 1234689999999999999999999987764
No 228
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.61 E-value=9.2e-15 Score=135.78 Aligned_cols=166 Identities=23% Similarity=0.263 Sum_probs=118.9
Q ss_pred eeEEEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 113 HKSVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 113 ~~~ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++.++|.+|+|||||+|+|+......++..+-+|+........+++..++||||||+.+.... .......++..+...
T Consensus 41 nvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~--D~~~r~~~~d~l~~~ 118 (296)
T COG3596 41 NVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDK--DAEHRQLYRDYLPKL 118 (296)
T ss_pred eEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhh--hHHHHHHHHHHhhhc
Confidence 334999999999999999998888777777766666666666777788999999999763211 222344566778899
Q ss_pred ceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChh------------hHHHH----HHHH-HhcCCCce
Q 015293 193 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG------------EIAKK----LEWY-EKFTDVDE 255 (409)
Q Consensus 193 DvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~------------~~~~~----~~~~-~~~~~~~~ 255 (409)
|++++++|+.++.-..+..+++.+.....+.|+++++|.+|+..+. ....+ .+.. .......|
T Consensus 119 DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~p 198 (296)
T COG3596 119 DLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKP 198 (296)
T ss_pred cEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999877444444444333322558999999999986441 11111 1111 11223457
Q ss_pred EEEcccCCCCCHHHHHHHHHhhCCC
Q 015293 256 VIPVSAKYGHGVEDIRDWILTKLPL 280 (409)
Q Consensus 256 iv~iSA~~g~gi~~L~~~L~~~l~~ 280 (409)
++..|+..+.|++.|..+++..+|.
T Consensus 199 V~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 199 VVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred eEEeccccCccHHHHHHHHHHhCcc
Confidence 8899999999999999999999984
No 229
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.61 E-value=1.1e-14 Score=148.47 Aligned_cols=151 Identities=19% Similarity=0.206 Sum_probs=103.6
Q ss_pred EEecCCCChHHHHHHHhCCcce------------------------eee------cCCCceEEEEEEEEeCCCeeEEEEe
Q 015293 116 VLGKPNVGKSTLANQMIGQKLS------------------------IVT------NKPQTTRHRILGICSGPEYQMILYD 165 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~------------------------~v~------~~~~tt~~~~~~~~~~~~~~i~liD 165 (409)
++|+.++|||||+.+|+..-.. .+. ...+.|.+.....+.+++..+.|+|
T Consensus 12 i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~i~lID 91 (446)
T PTZ00141 12 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYFTIID 91 (446)
T ss_pred EEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeEEEEEE
Confidence 9999999999999999742110 011 2235666666666788889999999
Q ss_pred CCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCC-------ChHHHHHHHHhccCCCCCC-EEEEEecCCCCC-
Q 015293 166 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLP-ILLVLNKKDLIK- 236 (409)
Q Consensus 166 tpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~-------~~~~~~l~~~l~~~~~~~p-~ilvlNK~Dl~~- 236 (409)
|||+. . |...+...+..+|++++|+|+..+. ..++...+.++.. .++| +|+++||+|+..
T Consensus 92 tPGh~--~-------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~--~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 92 APGHR--D-------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT--LGVKQMIVCINKMDDKTV 160 (446)
T ss_pred CCChH--H-------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH--cCCCeEEEEEEccccccc
Confidence 99943 2 4566677788999999999999875 3566666666655 5666 678999999532
Q ss_pred ---hhhHHHHH----HHHHhcC---CCceEEEcccCCCCCHHH------------HHHHHHhh
Q 015293 237 ---PGEIAKKL----EWYEKFT---DVDEVIPVSAKYGHGVED------------IRDWILTK 277 (409)
Q Consensus 237 ---~~~~~~~~----~~~~~~~---~~~~iv~iSA~~g~gi~~------------L~~~L~~~ 277 (409)
........ ..+.... ...+++++||.+|+|+.+ |+++|...
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~ 223 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL 223 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC
Confidence 12222222 2222211 125799999999999964 77776543
No 230
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.60 E-value=7.3e-15 Score=135.78 Aligned_cols=109 Identities=27% Similarity=0.341 Sum_probs=72.4
Q ss_pred EEecCCCChHHHHHHHhCCcceee---ecC---------------CCceEEEEEEEE-----eCCCeeEEEEeCCCCchh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV---TNK---------------PQTTRHRILGIC-----SGPEYQMILYDTPGIIEK 172 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v---~~~---------------~~tt~~~~~~~~-----~~~~~~i~liDtpG~~~~ 172 (409)
++|++|+|||||+++|++...... ... .+.|.......+ ......+.+|||||+..
T Consensus 5 iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~- 83 (213)
T cd04167 5 IAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGHVN- 83 (213)
T ss_pred EEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCCcc-
Confidence 899999999999999987543321 001 111211111111 12347899999999532
Q ss_pred hhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCC
Q 015293 173 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 235 (409)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~ 235 (409)
+...+..++..+|++++|+|++++.......+...... .+.|+++|+||+|+.
T Consensus 84 --------f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~--~~~p~iiviNK~D~~ 136 (213)
T cd04167 84 --------FMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL--EGLPIVLVINKIDRL 136 (213)
T ss_pred --------hHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccC
Confidence 22334556789999999999988776555444444433 468999999999986
No 231
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.59 E-value=1.2e-14 Score=141.86 Aligned_cols=179 Identities=23% Similarity=0.294 Sum_probs=116.7
Q ss_pred EEecCCCChHHHHHHHh------CCcceeeecCCCceE-----------------E---EEEEE----------------
Q 015293 116 VLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTR-----------------H---RILGI---------------- 153 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~------~~~~~~v~~~~~tt~-----------------~---~~~~~---------------- 153 (409)
|.|.||+|||||++.|. |.++..++..|.+.. + .+...
T Consensus 61 i~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~a~~~~~~ 140 (332)
T PRK09435 61 ITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVARKTRET 140 (332)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccchHHHHHHH
Confidence 99999999999999874 334444444333221 0 11110
Q ss_pred ---EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEe
Q 015293 154 ---CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 230 (409)
Q Consensus 154 ---~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlN 230 (409)
+...++.++|+||+|..+.... ....||++++|++...+..-+ .+.. .. ....-++|+|
T Consensus 141 ~~~~~~~g~d~viieT~Gv~qs~~~------------i~~~aD~vlvv~~p~~gd~iq--~~k~--gi--~E~aDIiVVN 202 (332)
T PRK09435 141 MLLCEAAGYDVILVETVGVGQSETA------------VAGMVDFFLLLQLPGAGDELQ--GIKK--GI--MELADLIVIN 202 (332)
T ss_pred HHHHhccCCCEEEEECCCCccchhH------------HHHhCCEEEEEecCCchHHHH--HHHh--hh--hhhhheEEee
Confidence 1233578999999998642211 245799999998743332111 1111 00 1233489999
Q ss_pred cCCCCChhhHHHHHHHHHhc----C----CC-ceEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCccccC---chHHHH
Q 015293 231 KKDLIKPGEIAKKLEWYEKF----T----DV-DEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSE---HPERFF 298 (409)
Q Consensus 231 K~Dl~~~~~~~~~~~~~~~~----~----~~-~~iv~iSA~~g~gi~~L~~~L~~~l~~~~~~~~~~~~t~---~~~r~~ 298 (409)
|+|+............+... . .+ .|++++||++|.|+++|++.|.++++ +.++.+.+++ ++.+++
T Consensus 203 KaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~---~l~~sg~l~~~r~~~~~~~ 279 (332)
T PRK09435 203 KADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA---ALTASGEFAARRREQQVDW 279 (332)
T ss_pred hhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH---HhccCChHHHHHHHHHHHH
Confidence 99998644333222222211 1 12 47999999999999999999999876 6778888877 778889
Q ss_pred HHHHHHHHHHhhcCCCC
Q 015293 299 VGEIIREKIFMQYRNEV 315 (409)
Q Consensus 299 i~EiiRe~i~~~~~~ei 315 (409)
+.+++|++++..++...
T Consensus 280 v~elire~l~~~~~~~~ 296 (332)
T PRK09435 280 MWEMVEEGLLDRLFADP 296 (332)
T ss_pred HHHHHHHHHHHHHhhCc
Confidence 99999999998876544
No 232
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.59 E-value=8.5e-15 Score=124.68 Aligned_cols=155 Identities=21% Similarity=0.251 Sum_probs=106.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecC-CCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNK-PQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~-~~tt~~~~~~~--~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++|.+|||||||+-+++...+....+. .| .|+.... +.....++.+|||+| ++.++.| +.++++.|
T Consensus 16 lIGeSGVGKSSLllrFv~~~fd~~~~~tIG--vDFkvk~m~vdg~~~KlaiWDTAG--qErFRtL-------TpSyyRga 84 (209)
T KOG0080|consen 16 LIGESGVGKSSLLLRFVSNTFDDLHPTTIG--VDFKVKVMQVDGKRLKLAIWDTAG--QERFRTL-------TPSYYRGA 84 (209)
T ss_pred EEccCCccHHHHHHHHHhcccCccCCceee--eeEEEEEEEEcCceEEEEEEeccc--hHhhhcc-------CHhHhccC
Confidence 999999999999999998887533222 22 2333333 344456789999999 6776666 44568999
Q ss_pred ceEEEEeeCCCCC--ChHHHHHHHHhccCC--CCCCEEEEEecCCCCChhhHH--HHHHHHHhcCCCceEEEcccCCCCC
Q 015293 193 DCIVVLVDACKAP--ERIDEILEEGVGDHK--DKLPILLVLNKKDLIKPGEIA--KKLEWYEKFTDVDEVIPVSAKYGHG 266 (409)
Q Consensus 193 DvillVvD~~~~~--~~~~~~l~~~l~~~~--~~~p~ilvlNK~Dl~~~~~~~--~~~~~~~~~~~~~~iv~iSA~~g~g 266 (409)
..+|+|+|++... ...+.|+.+ +..+. .++-.++|+||+|......+. +-+.+..++ ..-++.+||++.+|
T Consensus 85 qGiIlVYDVT~Rdtf~kLd~W~~E-ld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h--~~LFiE~SAkt~~~ 161 (209)
T KOG0080|consen 85 QGIILVYDVTSRDTFVKLDIWLKE-LDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKH--RCLFIECSAKTREN 161 (209)
T ss_pred ceeEEEEEccchhhHHhHHHHHHH-HHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhh--CcEEEEcchhhhcc
Confidence 9999999998765 334444433 33322 456668999999986433222 222222222 23579999999999
Q ss_pred HHHHHHHHHhhCCCCCCC
Q 015293 267 VEDIRDWILTKLPLGPAY 284 (409)
Q Consensus 267 i~~L~~~L~~~l~~~~~~ 284 (409)
+...|+.|+..+-+.|..
T Consensus 162 V~~~FeelveKIi~tp~l 179 (209)
T KOG0080|consen 162 VQCCFEELVEKIIETPSL 179 (209)
T ss_pred HHHHHHHHHHHHhcCcch
Confidence 999999999877655543
No 233
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.57 E-value=1.4e-14 Score=121.55 Aligned_cols=152 Identities=19% Similarity=0.199 Sum_probs=109.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|..|+|||||+|.+....+. ..-+.|+-+....++.+...+.+||.|| +..+..+ +..+.+.++++
T Consensus 25 lvGLq~sGKtt~Vn~ia~g~~~---edmiptvGfnmrk~tkgnvtiklwD~gG--q~rfrsm-------WerycR~v~ai 92 (186)
T KOG0075|consen 25 LVGLQNSGKTTLVNVIARGQYL---EDMIPTVGFNMRKVTKGNVTIKLWDLGG--QPRFRSM-------WERYCRGVSAI 92 (186)
T ss_pred EEeeccCCcceEEEEEeeccch---hhhcccccceeEEeccCceEEEEEecCC--CccHHHH-------HHHHhhcCcEE
Confidence 9999999999999988765442 2333444455556677788999999999 5444433 55568899999
Q ss_pred EEEeeCCCCC--ChHHHHHHHHhccCC-CCCCEEEEEecCCCCChhhHHHHHHHHHhc---CCCceEEEcccCCCCCHHH
Q 015293 196 VVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 196 llVvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~---~~~~~iv~iSA~~g~gi~~ 269 (409)
+||+|+.++. +....++..++.+.. .++|+++++||.|+..+-.-......+... ..-..++.+||+...||+-
T Consensus 93 vY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~ 172 (186)
T KOG0075|consen 93 VYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDI 172 (186)
T ss_pred EEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence 9999999854 444556666665422 579999999999998654433333333211 1223578999999999999
Q ss_pred HHHHHHhhCC
Q 015293 270 IRDWILTKLP 279 (409)
Q Consensus 270 L~~~L~~~l~ 279 (409)
+++||.++..
T Consensus 173 ~~~Wli~hsk 182 (186)
T KOG0075|consen 173 TLDWLIEHSK 182 (186)
T ss_pred HHHHHHHHhh
Confidence 9999998654
No 234
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.8e-14 Score=128.45 Aligned_cols=153 Identities=19% Similarity=0.226 Sum_probs=107.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeee-cCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~-~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|.++||||-|+.++....+..-+ .+.|.+.......+..+-....+|||+| ++.++.+ ...+++.|..
T Consensus 19 liGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAG--QERyrAi-------tSaYYrgAvG 89 (222)
T KOG0087|consen 19 LIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAG--QERYRAI-------TSAYYRGAVG 89 (222)
T ss_pred EeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccc--hhhhccc-------cchhhcccce
Confidence 9999999999999999998876433 2344444444444555557789999999 6665544 3456899999
Q ss_pred EEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCceEEEcccCCCCCHHHHH
Q 015293 195 IVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGHGVEDIR 271 (409)
Q Consensus 195 illVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~-~~~~~~~~~~~~~iv~iSA~~g~gi~~L~ 271 (409)
+++|+|++... +....|+.++......++++++|+||+||.....+.. ....++...+ ..++.+||..+.|++..|
T Consensus 90 AllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~-l~f~EtSAl~~tNVe~aF 168 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEG-LFFLETSALDATNVEKAF 168 (222)
T ss_pred eEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcC-ceEEEecccccccHHHHH
Confidence 99999998765 4556666666554447899999999999975222111 1111222112 257999999999999999
Q ss_pred HHHHhhC
Q 015293 272 DWILTKL 278 (409)
Q Consensus 272 ~~L~~~l 278 (409)
..+...+
T Consensus 169 ~~~l~~I 175 (222)
T KOG0087|consen 169 ERVLTEI 175 (222)
T ss_pred HHHHHHH
Confidence 7776543
No 235
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=3.6e-14 Score=119.34 Aligned_cols=152 Identities=20% Similarity=0.246 Sum_probs=101.8
Q ss_pred EEecCCCChHHHHHHHhCCccee-eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|..|||||+|+.+++..-++. .+.+.|......+..+..+..++.+|||+| ++.++++ +.++++.|+.
T Consensus 12 lvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtag--qerfrsi-------tqsyyrsaha 82 (213)
T KOG0095|consen 12 LVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAG--QERFRSI-------TQSYYRSAHA 82 (213)
T ss_pred EEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccc--hHHHHHH-------HHHHhhhcce
Confidence 99999999999999998765531 122222222222333445567889999999 6665554 5566889999
Q ss_pred EEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHH-HHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 195 IVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 195 illVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~-~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
+++|+|++-.+ .-..+|+.+. ..+ ..+.-.|+|+||+|+.+..++...+ +.+... .+.-++.+||+..+|++.|
T Consensus 83 lilvydiscqpsfdclpewlrei-e~yan~kvlkilvgnk~d~~drrevp~qigeefs~~-qdmyfletsakea~nve~l 160 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREI-EQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEA-QDMYFLETSAKEADNVEKL 160 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHH-HHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHh-hhhhhhhhcccchhhHHHH
Confidence 99999998655 2233444432 222 1455679999999998766654332 222222 2224688999999999999
Q ss_pred HHHHHhhC
Q 015293 271 RDWILTKL 278 (409)
Q Consensus 271 ~~~L~~~l 278 (409)
|..+...+
T Consensus 161 f~~~a~rl 168 (213)
T KOG0095|consen 161 FLDLACRL 168 (213)
T ss_pred HHHHHHHH
Confidence 98887554
No 236
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.55 E-value=4e-14 Score=139.38 Aligned_cols=192 Identities=24% Similarity=0.289 Sum_probs=126.4
Q ss_pred EEecCCCChHHHHHHHhCCccee--------------eecCCCceEEEEEEEEe-----CCCeeEEEEeCCCCchhhhhh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI--------------VTNKPQTTRHRILGICS-----GPEYQMILYDTPGIIEKKIHM 176 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~--------------v~~~~~tt~~~~~~~~~-----~~~~~i~liDtpG~~~~~~~~ 176 (409)
|+.|-..|||||..+|+...... +...-|.|...+...+. ...+.++|+||||+++.++.
T Consensus 14 IIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYE- 92 (603)
T COG0481 14 IIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYE- 92 (603)
T ss_pred EEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEE-
Confidence 89999999999999997432211 12223445443333222 23478999999998875543
Q ss_pred HhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCC--c
Q 015293 177 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV--D 254 (409)
Q Consensus 177 l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~--~ 254 (409)
+..++..|..+++|||++.+.+.++. .+....+..+.-+|-|+||+||...+. +.....++...+. .
T Consensus 93 --------VSRSLAACEGalLvVDAsQGveAQTl--AN~YlAle~~LeIiPViNKIDLP~Adp-ervk~eIe~~iGid~~ 161 (603)
T COG0481 93 --------VSRSLAACEGALLVVDASQGVEAQTL--ANVYLALENNLEIIPVLNKIDLPAADP-ERVKQEIEDIIGIDAS 161 (603)
T ss_pred --------ehhhHhhCCCcEEEEECccchHHHHH--HHHHHHHHcCcEEEEeeecccCCCCCH-HHHHHHHHHHhCCCcc
Confidence 22346789999999999999877653 222222226788999999999986433 2333334433333 3
Q ss_pred eEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCccccCchHHHHHHHHHHHHHHh-hcCCCCCceeEEEEEEEEecCCCe
Q 015293 255 EVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFM-QYRNEVPYACQVNVVSYKTRPTAK 333 (409)
Q Consensus 255 ~iv~iSA~~g~gi~~L~~~L~~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~-~~~~eipys~~v~v~~~~~~~~~~ 333 (409)
..+.+||++|.||+++++.|++.+|+..... +.|.+. -||+ +|..-.|-.+.+++..+..+++..
T Consensus 162 dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~------~~pLkA--------LifDS~yD~Y~GVv~~vRi~dG~ik~gdk 227 (603)
T COG0481 162 DAVLVSAKTGIGIEDVLEAIVEKIPPPKGDP------DAPLKA--------LIFDSWYDNYLGVVVLVRIFDGTLKKGDK 227 (603)
T ss_pred hheeEecccCCCHHHHHHHHHhhCCCCCCCC------CCcceE--------EEEeccccccceEEEEEEEeeceecCCCE
Confidence 5789999999999999999999998543211 123221 2233 455667888889998888776543
No 237
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=3.5e-14 Score=124.48 Aligned_cols=154 Identities=19% Similarity=0.247 Sum_probs=112.6
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
.++ ++|..|+||||++++|.-.......++.| +....+.+.+..+.+||..| +.+.+.+ +..++..
T Consensus 18 ~~IlmlGLD~AGKTTILykLk~~E~vttvPTiG----fnVE~v~ykn~~f~vWDvGG--q~k~R~l-------W~~Y~~~ 84 (181)
T KOG0070|consen 18 MRILMVGLDAAGKTTILYKLKLGEIVTTVPTIG----FNVETVEYKNISFTVWDVGG--QEKLRPL-------WKHYFQN 84 (181)
T ss_pred EEEEEEeccCCCceeeeEeeccCCcccCCCccc----cceeEEEEcceEEEEEecCC--Ccccccc-------hhhhccC
Confidence 344 99999999999999998777654433333 44445666789999999999 5444333 5567899
Q ss_pred cceEEEEeeCCCCC--ChHHHHHHHHhccCC-CCCCEEEEEecCCCCChh---hHHHHHHHHHhcCCCceEEEcccCCCC
Q 015293 192 ADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPG---EIAKKLEWYEKFTDVDEVIPVSAKYGH 265 (409)
Q Consensus 192 aDvillVvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilvlNK~Dl~~~~---~~~~~~~~~~~~~~~~~iv~iSA~~g~ 265 (409)
.+.+|||+|+++.. .+..+++...+.... ...|+++..||.|+...- ++...+....-....+.+..++|.+|+
T Consensus 85 t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~ 164 (181)
T KOG0070|consen 85 TQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGE 164 (181)
T ss_pred CcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccc
Confidence 99999999998765 444555665555422 579999999999997543 344444333333345578899999999
Q ss_pred CHHHHHHHHHhhCC
Q 015293 266 GVEDIRDWILTKLP 279 (409)
Q Consensus 266 gi~~L~~~L~~~l~ 279 (409)
|+.+-+++|.+.+.
T Consensus 165 GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 165 GLYEGLDWLSNNLK 178 (181)
T ss_pred cHHHHHHHHHHHHh
Confidence 99999999988765
No 238
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.55 E-value=1.8e-13 Score=150.06 Aligned_cols=145 Identities=22% Similarity=0.241 Sum_probs=99.0
Q ss_pred CChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC------------------CeeEEEEeCCCCchhhhhhHhHHHHH
Q 015293 122 VGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP------------------EYQMILYDTPGIIEKKIHMLDSMMMK 183 (409)
Q Consensus 122 ~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~------------------~~~i~liDtpG~~~~~~~~l~~~~~~ 183 (409)
++||||+.+|.+.+++ -....|.|.+.....+... -..+.|||||| +..+..+..
T Consensus 472 ~~KTtLLD~iR~t~v~-~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPG--he~F~~lr~---- 544 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVA-KKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPG--HEAFTSLRK---- 544 (1049)
T ss_pred cccccHHHHHhCCCcc-cccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCC--cHHHHHHHH----
Confidence 4699999999999885 3344555655433333221 13489999999 445444322
Q ss_pred HHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh------------------HHHH--
Q 015293 184 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------------IAKK-- 243 (409)
Q Consensus 184 ~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~------------------~~~~-- 243 (409)
..+..+|++++|+|++++...++......+.. .++|+++|+||+|+.+... ..+.
T Consensus 545 ---~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~--~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~ 619 (1049)
T PRK14845 545 ---RGGSLADLAVLVVDINEGFKPQTIEAINILRQ--YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEI 619 (1049)
T ss_pred ---hhcccCCEEEEEEECcccCCHhHHHHHHHHHH--cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHH
Confidence 23678999999999998877777766666665 5789999999999964211 0000
Q ss_pred -----HHHH-------------HhcCCCceEEEcccCCCCCHHHHHHHHHhhC
Q 015293 244 -----LEWY-------------EKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 244 -----~~~~-------------~~~~~~~~iv~iSA~~g~gi~~L~~~L~~~l 278 (409)
...+ ..+.+..+++++||++|+||++|+.+|..+.
T Consensus 620 ~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 620 KLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 0001 1223456899999999999999999887543
No 239
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.55 E-value=6.5e-14 Score=127.89 Aligned_cols=156 Identities=19% Similarity=0.140 Sum_probs=97.0
Q ss_pred EEecCCCChHHHHHHHhCCccee-ee---cCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-VT---NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-v~---~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
++|.+|+|||||+|+|+|..... .+ ....+|...... .......+.+|||||+... ....+. +.+. ..+..
T Consensus 6 i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~l~l~DtpG~~~~-~~~~~~-~l~~--~~~~~ 80 (197)
T cd04104 6 VTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPY-PHPKFPNVTLWDLPGIGST-AFPPDD-YLEE--MKFSE 80 (197)
T ss_pred EECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceee-ecCCCCCceEEeCCCCCcc-cCCHHH-HHHH--hCccC
Confidence 99999999999999999854321 11 111223222111 1112347899999997532 111222 2222 22568
Q ss_pred cceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh-------------HHHHHHHHH----hc-CCC
Q 015293 192 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-------------IAKKLEWYE----KF-TDV 253 (409)
Q Consensus 192 aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~-------------~~~~~~~~~----~~-~~~ 253 (409)
+|++++|.|. +....+..+.+.++. .+.|+++|+||+|+..+.. +..+.+.+. .. ...
T Consensus 81 ~d~~l~v~~~--~~~~~d~~~~~~l~~--~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~ 156 (197)
T cd04104 81 YDFFIIISST--RFSSNDVKLAKAIQC--MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSE 156 (197)
T ss_pred cCEEEEEeCC--CCCHHHHHHHHHHHH--hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 8999998653 356666666666666 5789999999999953211 111111111 11 234
Q ss_pred ceEEEcccC--CCCCHHHHHHHHHhhCCC
Q 015293 254 DEVIPVSAK--YGHGVEDIRDWILTKLPL 280 (409)
Q Consensus 254 ~~iv~iSA~--~g~gi~~L~~~L~~~l~~ 280 (409)
.+++.+|+. .+.|+..|.+.|...+++
T Consensus 157 p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 157 PPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 478999998 679999999999988874
No 240
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.3e-13 Score=134.68 Aligned_cols=144 Identities=21% Similarity=0.260 Sum_probs=99.6
Q ss_pred EEecCCCChHHHHHHHhCC------------------------cceeeec------CCCceEEEEEEEEeCCCeeEEEEe
Q 015293 116 VLGKPNVGKSTLANQMIGQ------------------------KLSIVTN------KPQTTRHRILGICSGPEYQMILYD 165 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~------------------------~~~~v~~------~~~tt~~~~~~~~~~~~~~i~liD 165 (409)
++|++++|||||+-+|+-. +++.+.+ .-|.|.+.....++.+...+.++|
T Consensus 12 ~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~~tIiD 91 (428)
T COG5256 12 FIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYNFTIID 91 (428)
T ss_pred EEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCceEEEee
Confidence 9999999999999998632 1222222 235566666666777888999999
Q ss_pred CCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCC-------CChHHHHHHHHhccCCCCCCEEEEEecCCCCCh-
Q 015293 166 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKLPILLVLNKKDLIKP- 237 (409)
Q Consensus 166 tpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~-------~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~- 237 (409)
|||+.+ |+..+...+++||+++||||++.+ ...++.+..-+.+.+ .-..+|+++||+|+.+-
T Consensus 92 aPGHrd---------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-Gi~~lIVavNKMD~v~wd 161 (428)
T COG5256 92 APGHRD---------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-GIKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CCchHH---------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-CCceEEEEEEcccccccC
Confidence 999533 556667778899999999999988 455555555444442 24568999999999852
Q ss_pred -hhHHHHH---HHHHhcCCC----ceEEEcccCCCCCHHH
Q 015293 238 -GEIAKKL---EWYEKFTDV----DEVIPVSAKYGHGVED 269 (409)
Q Consensus 238 -~~~~~~~---~~~~~~~~~----~~iv~iSA~~g~gi~~ 269 (409)
....++. ..+.+..++ .+++||||.+|.|+.+
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 2222221 112222222 4689999999999866
No 241
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.54 E-value=7e-14 Score=117.53 Aligned_cols=150 Identities=21% Similarity=0.293 Sum_probs=103.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCce-EEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt-~~~~~~~~~--~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
|+|.|+||||+|+-++....++ ..+..|+ .|.....+. .+...+.+|||+| ++.+..+ +..+++..
T Consensus 13 IigDsgVGKssLl~rF~ddtFs--~sYitTiGvDfkirTv~i~G~~VkLqIwDtAG--qErFrti-------tstyyrgt 81 (198)
T KOG0079|consen 13 IIGDSGVGKSSLLLRFADDTFS--GSYITTIGVDFKIRTVDINGDRVKLQIWDTAG--QERFRTI-------TSTYYRGT 81 (198)
T ss_pred eecCCcccHHHHHHHHhhcccc--cceEEEeeeeEEEEEeecCCcEEEEEEeeccc--HHHHHHH-------HHHHccCC
Confidence 9999999999999999887664 2332222 334333333 4456789999999 6554433 44568899
Q ss_pred ceEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 193 DCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 193 DvillVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~-~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
+++++|+|++++. .....|+.+. +..+...|-++|+||.|.....-+.. ....+....++ .+|.+||+..+|++.
T Consensus 82 hgv~vVYDVTn~ESF~Nv~rWLeei-~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgi-e~FETSaKe~~NvE~ 159 (198)
T KOG0079|consen 82 HGVIVVYDVTNGESFNNVKRWLEEI-RNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGI-ELFETSAKENENVEA 159 (198)
T ss_pred ceEEEEEECcchhhhHhHHHHHHHH-HhcCccccceecccCCCCccceeeehHHHHHHHHhcCc-hheehhhhhcccchH
Confidence 9999999999875 3344555544 43346789999999999975432221 11222222333 789999999999999
Q ss_pred HHHHHHhhC
Q 015293 270 IRDWILTKL 278 (409)
Q Consensus 270 L~~~L~~~l 278 (409)
.|.-|.+.+
T Consensus 160 mF~cit~qv 168 (198)
T KOG0079|consen 160 MFHCITKQV 168 (198)
T ss_pred HHHHHHHHH
Confidence 998887654
No 242
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.54 E-value=1.6e-13 Score=125.93 Aligned_cols=112 Identities=25% Similarity=0.350 Sum_probs=70.9
Q ss_pred EEEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~--~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
+++|++|+|||||+++|.+.++.. ..+.++......... ..+..+.+|||||+ ... ...+..+++.+
T Consensus 4 ll~G~~~sGKTsL~~~l~~~~~~~--t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~--~~~-------~~~~~~~~~~~ 72 (203)
T cd04105 4 LLLGPSDSGKTALFTKLTTGKYRS--TVTSIEPNVATFILNSEGKGKKFRLVDVPGH--PKL-------RDKLLETLKNS 72 (203)
T ss_pred EEEcCCCCCHHHHHHHHhcCCCCC--ccCcEeecceEEEeecCCCCceEEEEECCCC--HHH-------HHHHHHHHhcc
Confidence 389999999999999999876532 122222222221121 23578999999994 332 12234456677
Q ss_pred -ceEEEEeeCCCCCCh---HHHHHHHHhc---cCCCCCCEEEEEecCCCCCh
Q 015293 193 -DCIVVLVDACKAPER---IDEILEEGVG---DHKDKLPILLVLNKKDLIKP 237 (409)
Q Consensus 193 -DvillVvD~~~~~~~---~~~~l~~~l~---~~~~~~p~ilvlNK~Dl~~~ 237 (409)
+++|||+|++..... ...++...+. ....+.|+++|+||+|+...
T Consensus 73 ~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 73 AKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 999999999876322 2223333222 11257999999999998753
No 243
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=9.5e-14 Score=117.30 Aligned_cols=151 Identities=21% Similarity=0.197 Sum_probs=101.6
Q ss_pred eE-EEecCCCChHHHHHHHhCCccee-eecCCCceEEEEEEEEeC--CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhh
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 189 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~-v~~~~~tt~~~~~~~~~~--~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~ 189 (409)
++ ++|..|+|||+|+..++..++.- ++.+.|.. +...++.. +..++.+|||+| ++.++++ ++.++
T Consensus 11 Kfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGve--FgSrIinVGgK~vKLQIWDTAG--QErFRSV-------tRsYY 79 (214)
T KOG0086|consen 11 KFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVE--FGSRIVNVGGKTVKLQIWDTAG--QERFRSV-------TRSYY 79 (214)
T ss_pred eeEEeccCCCChhHHHHHHHHhhhcccccceeeee--ecceeeeecCcEEEEEEeeccc--HHHHHHH-------HHHHh
Confidence 44 99999999999999999887642 23333332 33334443 346789999999 6665444 66779
Q ss_pred cCcceEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHH-HHHHHhcCCCceEEEcccCCCCC
Q 015293 190 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-LEWYEKFTDVDEVIPVSAKYGHG 266 (409)
Q Consensus 190 ~~aDvillVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~-~~~~~~~~~~~~iv~iSA~~g~g 266 (409)
+.|-.+++|+|+++.. .....|+........+++-+|+++||.|+....++.-. ...+..... ..+..+||++|+|
T Consensus 80 RGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEne-l~flETSa~TGeN 158 (214)
T KOG0086|consen 80 RGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENE-LMFLETSALTGEN 158 (214)
T ss_pred ccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccc-eeeeeeccccccc
Confidence 9999999999998764 34445554432222367788999999999876654321 112222112 2468899999999
Q ss_pred HHHHHHHHHh
Q 015293 267 VEDIRDWILT 276 (409)
Q Consensus 267 i~~L~~~L~~ 276 (409)
+++.|-....
T Consensus 159 VEEaFl~c~~ 168 (214)
T KOG0086|consen 159 VEEAFLKCAR 168 (214)
T ss_pred HHHHHHHHHH
Confidence 9997755443
No 244
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.52 E-value=1.9e-14 Score=142.42 Aligned_cols=157 Identities=22% Similarity=0.252 Sum_probs=113.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
|+|+|||||||++|.++...+. |.+++.||+-...+.+.+.-..+.++||||+.+.+........+..+......--+|
T Consensus 173 lcG~PNVGKSSf~~~vtradve-vqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaV 251 (620)
T KOG1490|consen 173 VCGYPNVGKSSFNNKVTRADDE-VQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAV 251 (620)
T ss_pred EecCCCCCcHhhcccccccccc-cCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhh
Confidence 9999999999999999988875 789999999988888887778899999999988654443333333333334445679
Q ss_pred EEEeeCCCCCChH---HHHHHHHhccCCCCCCEEEEEecCCCCChhhHHH----HHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 196 VVLVDACKAPERI---DEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK----KLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 196 llVvD~~~~~~~~---~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~----~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
||++|.+..+... ...+...++.+..++|+|+|+||+|...+.++.+ .++.+....+ .+++.+|+.+.+|+-
T Consensus 252 LYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~-v~v~~tS~~~eegVm 330 (620)
T KOG1490|consen 252 LYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGN-VKVVQTSCVQEEGVM 330 (620)
T ss_pred eeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccC-ceEEEecccchhcee
Confidence 9999998765221 1223333344347899999999999987655432 3333433333 589999999999998
Q ss_pred HHHHHH
Q 015293 269 DIRDWI 274 (409)
Q Consensus 269 ~L~~~L 274 (409)
++...-
T Consensus 331 ~Vrt~A 336 (620)
T KOG1490|consen 331 DVRTTA 336 (620)
T ss_pred eHHHHH
Confidence 865443
No 245
>PTZ00258 GTP-binding protein; Provisional
Probab=99.51 E-value=1.4e-13 Score=136.85 Aligned_cols=84 Identities=26% Similarity=0.254 Sum_probs=68.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC-----------------eeEEEEeCCCCchhhhhhHh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKKIHMLD 178 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~-----------------~~i~liDtpG~~~~~~~~l~ 178 (409)
|||.||||||||+|+|++.+. .++++|+||+++..+.+...+ .++.++||||+...... .
T Consensus 26 IVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~--g 102 (390)
T PTZ00258 26 IVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASE--G 102 (390)
T ss_pred EECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcc--h
Confidence 999999999999999988875 689999999999998877653 35999999999753221 2
Q ss_pred HHHHHHHHHhhcCcceEEEEeeCC
Q 015293 179 SMMMKNVRSAGINADCIVVLVDAC 202 (409)
Q Consensus 179 ~~~~~~~~~~~~~aDvillVvD~~ 202 (409)
..+...+...++.||++++|+|+.
T Consensus 103 ~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 103 EGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred hHHHHHHHHHHHHCCEEEEEEeCC
Confidence 233455667789999999999984
No 246
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.51 E-value=3.5e-13 Score=137.55 Aligned_cols=143 Identities=21% Similarity=0.266 Sum_probs=95.2
Q ss_pred EEecCCCChHHHHHHHhCCcc------------------------eee------ecCCCceEEEEEEEEeCCCeeEEEEe
Q 015293 116 VLGKPNVGKSTLANQMIGQKL------------------------SIV------TNKPQTTRHRILGICSGPEYQMILYD 165 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~------------------------~~v------~~~~~tt~~~~~~~~~~~~~~i~liD 165 (409)
++|+.++|||||+.+|+.... +.+ ...-+.|.+.....+..++..+.|+|
T Consensus 12 i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liD 91 (447)
T PLN00043 12 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVID 91 (447)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCEEEEEEE
Confidence 999999999999999873211 001 11234566665666778889999999
Q ss_pred CCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCC-------ChHHHHHHHHhccCCCCC-CEEEEEecCCCCCh
Q 015293 166 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKL-PILLVLNKKDLIKP 237 (409)
Q Consensus 166 tpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~-------~~~~~~l~~~l~~~~~~~-p~ilvlNK~Dl~~~ 237 (409)
|||+ .. |...+..++..+|++|+|+|+..+. ..+....+.++.. .++ ++|+++||+|+...
T Consensus 92 tPGh--~d-------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~--~gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 92 APGH--RD-------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT--LGVKQMICCCNKMDATTP 160 (447)
T ss_pred CCCH--HH-------HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH--cCCCcEEEEEEcccCCch
Confidence 9994 22 4556667788999999999998763 1344445444444 456 47889999998621
Q ss_pred ----hhHH----HHHHHHHhcC---CCceEEEcccCCCCCHHH
Q 015293 238 ----GEIA----KKLEWYEKFT---DVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 238 ----~~~~----~~~~~~~~~~---~~~~iv~iSA~~g~gi~~ 269 (409)
.... ++...+.... ...+++++||.+|+|+.+
T Consensus 161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 1121 2222232221 124799999999999853
No 247
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.49 E-value=6.1e-13 Score=124.03 Aligned_cols=131 Identities=19% Similarity=0.264 Sum_probs=88.9
Q ss_pred EEecCCCChHHHHHHHhCCc-ceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~-~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|.+|+|||||+|.|++.. ...++...|+ ..+....+.++.++||||.. ..+...+..+|+
T Consensus 44 ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-----i~i~~~~~~~i~~vDtPg~~------------~~~l~~ak~aDv 106 (225)
T cd01882 44 VVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-----ITVVTGKKRRLTFIECPNDI------------NAMIDIAKVADL 106 (225)
T ss_pred EECCCCCCHHHHHHHHHhhcccCcccccccc-----EEEEecCCceEEEEeCCchH------------HHHHHHHHhcCE
Confidence 99999999999999998752 2223333332 11233467889999999932 123344678999
Q ss_pred EEEEeeCCCCCChHHHHHHHHhccCCCCCCEE-EEEecCCCCChhh-HHHHH----H-HHHhcCCCceEEEcccCCCC
Q 015293 195 IVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPGE-IAKKL----E-WYEKFTDVDEVIPVSAKYGH 265 (409)
Q Consensus 195 illVvD~~~~~~~~~~~l~~~l~~~~~~~p~i-lvlNK~Dl~~~~~-~~~~~----~-~~~~~~~~~~iv~iSA~~g~ 265 (409)
+++|+|++.+....+..++..+.. .+.|.+ +|+||+|+..... ..... . .......+.+++++||+++-
T Consensus 107 VllviDa~~~~~~~~~~i~~~l~~--~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 107 VLLLIDASFGFEMETFEFLNILQV--HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EEEEEecCcCCCHHHHHHHHHHHH--cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 999999998887777777776655 567754 5999999974322 22222 1 11223456799999999873
No 248
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.49 E-value=1.8e-12 Score=127.50 Aligned_cols=154 Identities=19% Similarity=0.228 Sum_probs=109.3
Q ss_pred EEecCCCChHHHHHHHhCCccee-----------ee----cCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-----------VT----NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSM 180 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-----------v~----~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~ 180 (409)
|+.|...|||||++.|+...... -| ..-|.|.-....-+.+++..|+++||||+.+..
T Consensus 10 IIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG------- 82 (603)
T COG1217 10 IIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG------- 82 (603)
T ss_pred EEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc-------
Confidence 99999999999999998543211 11 112344444444577899999999999965422
Q ss_pred HHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh---HHHHHHHHHh------cC
Q 015293 181 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEK------FT 251 (409)
Q Consensus 181 ~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~---~~~~~~~~~~------~~ 251 (409)
..+...++-.|.++++||+..++-+++.++....-. .+.+-|+|+||+|+..... +.+..+.+.. ..
T Consensus 83 --GEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~--~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 83 --GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA--LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred --chhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHH--cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence 234444778999999999999998888877654333 5677789999999986433 2333333332 22
Q ss_pred CCceEEEcccCCC----------CCHHHHHHHHHhhCCCC
Q 015293 252 DVDEVIPVSAKYG----------HGVEDIRDWILTKLPLG 281 (409)
Q Consensus 252 ~~~~iv~iSA~~g----------~gi~~L~~~L~~~l~~~ 281 (409)
.| |++..||+.| .++.-||+.|.+++|..
T Consensus 159 dF-PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P 197 (603)
T COG1217 159 DF-PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAP 197 (603)
T ss_pred CC-cEEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence 34 8899999987 47888999999999853
No 249
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.47 E-value=1.7e-12 Score=113.69 Aligned_cols=151 Identities=25% Similarity=0.290 Sum_probs=110.8
Q ss_pred EEecCCCChHHHHHHHhCCcceee-------ecCC--CceEEEEEEEEeCCC-eeEEEEeCCCCchhhhhhHhHHHHHHH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV-------TNKP--QTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNV 185 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v-------~~~~--~tt~~~~~~~~~~~~-~~i~liDtpG~~~~~~~~l~~~~~~~~ 185 (409)
++|..++||||++.++......++ +... .||.-.-.+.+..++ ..+.|+|||| |.+++.+ +
T Consensus 15 v~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPG--q~RF~fm-------~ 85 (187)
T COG2229 15 VIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPG--QERFKFM-------W 85 (187)
T ss_pred EEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCC--cHHHHHH-------H
Confidence 999999999999999987764322 1111 345444455555544 8899999999 5554433 3
Q ss_pred HHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCC-CCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCC
Q 015293 186 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 264 (409)
Q Consensus 186 ~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~-~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g 264 (409)
.-.++.++.+++++|++.+.......+.+.+.. .+ .|++|++||.|+.+....+++.+.+....--.+++.++|..+
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~--~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a~e~ 163 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITFHAEEIIDFLTS--RNPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDATEG 163 (187)
T ss_pred HHHhCCcceEEEEEecCCCcchHHHHHHHHHhh--ccCCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeeecccc
Confidence 334678999999999999887655666666655 44 999999999999876655555555544322358999999999
Q ss_pred CCHHHHHHHHHhh
Q 015293 265 HGVEDIRDWILTK 277 (409)
Q Consensus 265 ~gi~~L~~~L~~~ 277 (409)
+|..+.++.+...
T Consensus 164 ~~~~~~L~~ll~~ 176 (187)
T COG2229 164 EGARDQLDVLLLK 176 (187)
T ss_pred hhHHHHHHHHHhh
Confidence 9999999888766
No 250
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=7.5e-13 Score=129.46 Aligned_cols=116 Identities=21% Similarity=0.225 Sum_probs=86.8
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCccee---------------ee------cCCCceEEEEEEEEeCCCeeEEEEeCCCC
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQKLSI---------------VT------NKPQTTRHRILGICSGPEYQMILYDTPGI 169 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~~~~---------------v~------~~~~tt~~~~~~~~~~~~~~i~liDtpG~ 169 (409)
++.+ |+.||.+|||||..+|+--..++ .| ..-|.........+++.+..++|+||||+
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 4556 99999999999999986221111 11 11122222333346788999999999996
Q ss_pred chhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChh
Q 015293 170 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 238 (409)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~ 238 (409)
.+ |.+.+...+..+|.+|.|+|+..+.++++..+.+..+. ++.|++-.+||+|+...+
T Consensus 92 eD---------FSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrl--R~iPI~TFiNKlDR~~rd 149 (528)
T COG4108 92 ED---------FSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRL--RDIPIFTFINKLDREGRD 149 (528)
T ss_pred cc---------cchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhh--cCCceEEEeeccccccCC
Confidence 44 33445556778999999999999999999999999887 899999999999997543
No 251
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=4.6e-13 Score=112.54 Aligned_cols=153 Identities=14% Similarity=0.236 Sum_probs=99.7
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceee-ecCCCceEEEEEEEEe-CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v-~~~~~tt~~~~~~~~~-~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
++ ++|...+||||++-+.++..+.+. -.+.|... ....++. .....+.+|||+| ++.+..+ +-.+++
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidF-KvKTvyr~~kRiklQiwDTag--qEryrti-------TTayyR 92 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDF-KVKTVYRSDKRIKLQIWDTAG--QERYRTI-------TTAYYR 92 (193)
T ss_pred eEEEEccCCccchhhhHHhhccccccceeeeeeeeE-EEeEeeecccEEEEEEEeccc--chhhhHH-------HHHHhh
Confidence 44 999999999999999998876431 11111111 1112222 2346899999999 4443332 445689
Q ss_pred CcceEEEEeeCCCCC--ChHHHHHHHHhccCC-CCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCceEEEcccCCCCC
Q 015293 191 NADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 266 (409)
Q Consensus 191 ~aDvillVvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilvlNK~Dl~~~~~~~-~~~~~~~~~~~~~~iv~iSA~~g~g 266 (409)
+|+.+|+++|+++.. .....|.. .++.+. .+.|+|+|+||||+.+..-+. +.-..+....++ .+|.+||+.+.|
T Consensus 93 gamgfiLmyDitNeeSf~svqdw~t-qIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf-efFEtSaK~Nin 170 (193)
T KOG0093|consen 93 GAMGFILMYDITNEESFNSVQDWIT-QIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF-EFFETSAKENIN 170 (193)
T ss_pred ccceEEEEEecCCHHHHHHHHHHHH-HheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhCh-HHhhhccccccc
Confidence 999999999998653 22222322 223322 679999999999997643321 111223333455 689999999999
Q ss_pred HHHHHHHHHhhC
Q 015293 267 VEDIRDWILTKL 278 (409)
Q Consensus 267 i~~L~~~L~~~l 278 (409)
+.++++.++..+
T Consensus 171 Vk~~Fe~lv~~I 182 (193)
T KOG0093|consen 171 VKQVFERLVDII 182 (193)
T ss_pred HHHHHHHHHHHH
Confidence 999999988655
No 252
>PTZ00099 rab6; Provisional
Probab=99.47 E-value=5.5e-13 Score=119.59 Aligned_cols=116 Identities=22% Similarity=0.241 Sum_probs=78.8
Q ss_pred CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCC
Q 015293 156 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKD 233 (409)
Q Consensus 156 ~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~D 233 (409)
.+..++.||||||. +.+..+. ..+++.||++|+|+|++++. +....|+...++......|++||+||+|
T Consensus 26 ~~~v~l~iwDt~G~--e~~~~~~-------~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~D 96 (176)
T PTZ00099 26 EGPVRLQLWDTAGQ--ERFRSLI-------PSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTD 96 (176)
T ss_pred CEEEEEEEEECCCh--HHhhhcc-------HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcc
Confidence 34578999999994 4444332 23478999999999998854 3344455444433225689999999999
Q ss_pred CCChh--hHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHHhhCCCCC
Q 015293 234 LIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 282 (409)
Q Consensus 234 l~~~~--~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~~~l~~~~ 282 (409)
+.... ...+........ + ..++++||++|.||++++++|.+.+++.+
T Consensus 97 L~~~~~v~~~e~~~~~~~~-~-~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 97 LGDLRKVTYEEGMQKAQEY-N-TMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred cccccCCCHHHHHHHHHHc-C-CEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 86422 112222222222 2 36899999999999999999999887543
No 253
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.46 E-value=1.2e-12 Score=123.66 Aligned_cols=126 Identities=18% Similarity=0.237 Sum_probs=86.9
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh-hhHhHHHHHHHHHhhc
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-HMLDSMMMKNVRSAGI 190 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~-~~l~~~~~~~~~~~~~ 190 (409)
..+ |+|.+|||||||+|+|+|...+.++...++|..........++..+.+|||||+..... ..........+..++.
T Consensus 32 ~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~ 111 (249)
T cd01853 32 LTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLK 111 (249)
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHh
Confidence 344 99999999999999999999887888877888777766777889999999999975421 1122233334444443
Q ss_pred --CcceEEEEeeCCCC-CChHHHHHHHHhcc-CCC--CCCEEEEEecCCCCChh
Q 015293 191 --NADCIVVLVDACKA-PERIDEILEEGVGD-HKD--KLPILLVLNKKDLIKPG 238 (409)
Q Consensus 191 --~aDvillVvD~~~~-~~~~~~~l~~~l~~-~~~--~~p~ilvlNK~Dl~~~~ 238 (409)
..|+++||...+.. ....+..+.+.+.. ++. -.++++|+||+|...+.
T Consensus 112 ~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 112 KKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred ccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 57899998765532 23444444444433 211 25799999999997543
No 254
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.45 E-value=7e-14 Score=118.78 Aligned_cols=153 Identities=18% Similarity=0.260 Sum_probs=104.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeee-cCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~-~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|..-||||||+-+.+..++.... .+.+.........+.....++.+|||+| ++.++.+... +++.++.
T Consensus 18 LLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAG--QErfHALGPI-------YYRgSnG 88 (218)
T KOG0088|consen 18 LLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAG--QERFHALGPI-------YYRGSNG 88 (218)
T ss_pred EEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccc--hHhhhccCce-------EEeCCCc
Confidence 9999999999999998877764210 0000000011111222346789999999 7788877664 4889999
Q ss_pred EEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCceEEEcccCCCCCHHHHH
Q 015293 195 IVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGHGVEDIR 271 (409)
Q Consensus 195 illVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~-~~~~~~~~~~~~~iv~iSA~~g~gi~~L~ 271 (409)
+++|+|+++.. +....|+.++....+..+.++||+||+|+.....+.. ..+.+...-+ ..++.+||+.+.||.+||
T Consensus 89 alLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvG-A~y~eTSAk~N~Gi~elF 167 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVG-ALYMETSAKDNVGISELF 167 (218)
T ss_pred eEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhc-hhheecccccccCHHHHH
Confidence 99999999765 4455677666555456788999999999975443321 1223333223 257999999999999999
Q ss_pred HHHHhhC
Q 015293 272 DWILTKL 278 (409)
Q Consensus 272 ~~L~~~l 278 (409)
+.|...+
T Consensus 168 e~Lt~~M 174 (218)
T KOG0088|consen 168 ESLTAKM 174 (218)
T ss_pred HHHHHHH
Confidence 9987655
No 255
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.45 E-value=9.7e-13 Score=129.45 Aligned_cols=84 Identities=25% Similarity=0.332 Sum_probs=68.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCe-----------------eEEEEeCCCCchhhhhhHh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-----------------QMILYDTPGIIEKKIHMLD 178 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~-----------------~i~liDtpG~~~~~~~~l~ 178 (409)
|||.||||||||+|+|++.+ +.++++|+||+++..+.+...+. ++.++||||+...... .
T Consensus 7 IVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~--g 83 (364)
T PRK09601 7 IVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK--G 83 (364)
T ss_pred EECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh--H
Confidence 99999999999999999999 57899999999998887765542 5899999999753221 2
Q ss_pred HHHHHHHHHhhcCcceEEEEeeCC
Q 015293 179 SMMMKNVRSAGINADCIVVLVDAC 202 (409)
Q Consensus 179 ~~~~~~~~~~~~~aDvillVvD~~ 202 (409)
..+.......++.||++++|||+.
T Consensus 84 ~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 84 EGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCC
Confidence 234455667789999999999985
No 256
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.45 E-value=2.2e-12 Score=118.18 Aligned_cols=138 Identities=17% Similarity=0.220 Sum_probs=83.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceE-EEEEEEEeC-------CCeeEEEEeCCCCchhhhhhHhHHHHHHHHH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRILGICSG-------PEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 187 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~-~~~~~~~~~-------~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~ 187 (409)
++|.++||||||++++++..+.. ....|.. +.....+.. ....+.+|||+| ++.+..+.. .
T Consensus 5 lvGd~gVGKTSLi~~~~~~~f~~--~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG--~e~~~~l~~-------~ 73 (202)
T cd04102 5 VVGDSGVGKSSLVHLICKNQVLG--RPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGG--SESVKSTRA-------V 73 (202)
T ss_pred EECCCCCCHHHHHHHHHcCCCCC--CCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCC--chhHHHHHH-------H
Confidence 89999999999999999877642 2222221 111112221 235789999999 444444433 3
Q ss_pred hhcCcceEEEEeeCCCCC--ChHHHHHHHHhcc------------------C-CCCCCEEEEEecCCCCChhhHHH----
Q 015293 188 AGINADCIVVLVDACKAP--ERIDEILEEGVGD------------------H-KDKLPILLVLNKKDLIKPGEIAK---- 242 (409)
Q Consensus 188 ~~~~aDvillVvD~~~~~--~~~~~~l~~~l~~------------------~-~~~~p~ilvlNK~Dl~~~~~~~~---- 242 (409)
+++.+|++|+|+|.++.. +....|+.+.... . ..+.|++||+||+|+........
T Consensus 74 ~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~ 153 (202)
T cd04102 74 FYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVL 153 (202)
T ss_pred HhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHh
Confidence 478999999999998865 3334444443321 0 14689999999999975432111
Q ss_pred -HHHHHHhcCCCceEEEcccCCCC
Q 015293 243 -KLEWYEKFTDVDEVIPVSAKYGH 265 (409)
Q Consensus 243 -~~~~~~~~~~~~~iv~iSA~~g~ 265 (409)
....+....+. +.+..+|..+.
T Consensus 154 ~~~~~ia~~~~~-~~i~~~c~~~~ 176 (202)
T cd04102 154 TARGFVAEQGNA-EEINLNCTNGR 176 (202)
T ss_pred hHhhhHHHhcCC-ceEEEecCCcc
Confidence 12233333343 45666776543
No 257
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.44 E-value=6.8e-13 Score=126.53 Aligned_cols=84 Identities=26% Similarity=0.318 Sum_probs=67.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCe-----------------eEEEEeCCCCchhhhhhHh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-----------------QMILYDTPGIIEKKIHMLD 178 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~-----------------~i~liDtpG~~~~~~~~l~ 178 (409)
|||.||||||||+|+|++.+. .++++|+||+++..+.+...+. ++.++||||+...... .
T Consensus 3 ivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~--~ 79 (274)
T cd01900 3 IVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK--G 79 (274)
T ss_pred EeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch--h
Confidence 799999999999999999998 6899999999998888776553 4999999999753221 2
Q ss_pred HHHHHHHHHhhcCcceEEEEeeCC
Q 015293 179 SMMMKNVRSAGINADCIVVLVDAC 202 (409)
Q Consensus 179 ~~~~~~~~~~~~~aDvillVvD~~ 202 (409)
..+.......++.||++++|||+.
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEeCc
Confidence 223345666788999999999975
No 258
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.44 E-value=4.1e-13 Score=114.78 Aligned_cols=152 Identities=22% Similarity=0.339 Sum_probs=105.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEE---eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC---SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~---~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++|.+.||||+|+..++..+++..++ |..-.|.....+ .....++.||||+| ++.++++ ++++++++
T Consensus 13 vigdstvgkssll~~ft~gkfaelsd-ptvgvdffarlie~~pg~riklqlwdtag--qerfrsi-------tksyyrns 82 (213)
T KOG0091|consen 13 VIGDSTVGKSSLLRYFTEGKFAELSD-PTVGVDFFARLIELRPGYRIKLQLWDTAG--QERFRSI-------TKSYYRNS 82 (213)
T ss_pred EEcCCcccHHHHHHHHhcCcccccCC-CccchHHHHHHHhcCCCcEEEEEEeeccc--hHHHHHH-------HHHHhhcc
Confidence 99999999999999999988875542 222222221112 22336789999999 6665544 56778999
Q ss_pred ceEEEEeeCCCCC--ChHHHHHHHHhccCC-C-CCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCceEEEcccCCCCCH
Q 015293 193 DCIVVLVDACKAP--ERIDEILEEGVGDHK-D-KLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 193 DvillVvD~~~~~--~~~~~~l~~~l~~~~-~-~~p~ilvlNK~Dl~~~~~~~~-~~~~~~~~~~~~~iv~iSA~~g~gi 267 (409)
-.+++|+|.++.. +....|+.+...... + ++-+++|+.|+|+.....+.. ..+.+....+. .++.+||++|.|+
T Consensus 83 vgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM-~FVETSak~g~NV 161 (213)
T KOG0091|consen 83 VGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGM-AFVETSAKNGCNV 161 (213)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCc-eEEEecccCCCcH
Confidence 9999999998765 445566655443322 3 344678999999986554432 23444444444 6899999999999
Q ss_pred HHHHHHHHhhC
Q 015293 268 EDIRDWILTKL 278 (409)
Q Consensus 268 ~~L~~~L~~~l 278 (409)
++-+..|.+.+
T Consensus 162 eEAF~mlaqeI 172 (213)
T KOG0091|consen 162 EEAFDMLAQEI 172 (213)
T ss_pred HHHHHHHHHHH
Confidence 99888887643
No 259
>PRK13768 GTPase; Provisional
Probab=99.44 E-value=1.4e-12 Score=123.72 Aligned_cols=120 Identities=29% Similarity=0.390 Sum_probs=78.6
Q ss_pred eEEEEeCCCCchh-hhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhc---cCCCCCCEEEEEecCCCC
Q 015293 160 QMILYDTPGIIEK-KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVG---DHKDKLPILLVLNKKDLI 235 (409)
Q Consensus 160 ~i~liDtpG~~~~-~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~---~~~~~~p~ilvlNK~Dl~ 235 (409)
.++++||||..+. ........+.+...... ++++++|+|++......+......+. ....++|+++|+||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 6899999996431 12333334444333221 89999999998766554432222211 111579999999999998
Q ss_pred ChhhHHHHHHHH----------------------------HhcCCCceEEEcccCCCCCHHHHHHHHHhhCCCC
Q 015293 236 KPGEIAKKLEWY----------------------------EKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 281 (409)
Q Consensus 236 ~~~~~~~~~~~~----------------------------~~~~~~~~iv~iSA~~g~gi~~L~~~L~~~l~~~ 281 (409)
+..+.......+ .......+++++||+++.|+++|+++|.+.++..
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~ 249 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGG 249 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCC
Confidence 765543332222 2223345789999999999999999999998743
No 260
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=3.6e-13 Score=116.42 Aligned_cols=157 Identities=24% Similarity=0.298 Sum_probs=106.8
Q ss_pred EEecCCCChHHHHHHHhCCcce----eeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 116 VLGKPNVGKSTLANQMIGQKLS----IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~----~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
|+|..|+||||++.++-..... .......+|.-...+.++.++..+.|||..| ++...++ +..++..
T Consensus 22 IlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgG--Qe~lrSl-------w~~yY~~ 92 (197)
T KOG0076|consen 22 ILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGG--QESLRSL-------WKKYYWL 92 (197)
T ss_pred eeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCC--hHHHHHH-------HHHHHHH
Confidence 9999999999999987533211 1112233444455566666788999999999 6554444 4456889
Q ss_pred cceEEEEeeCCCCC--ChHHHHHHHHhcc-CCCCCCEEEEEecCCCCChhhHHHHHHHHH--h--cCCCceEEEcccCCC
Q 015293 192 ADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYE--K--FTDVDEVIPVSAKYG 264 (409)
Q Consensus 192 aDvillVvD~~~~~--~~~~~~l~~~l~~-~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~--~--~~~~~~iv~iSA~~g 264 (409)
|+++++|+|++++. +.....+...... .-.+.|+++.+||.|+.+..+..++...+. . ..+..++.||||.+|
T Consensus 93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~g 172 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTG 172 (197)
T ss_pred hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhc
Confidence 99999999999854 2222222222111 116899999999999987655444433332 1 113357899999999
Q ss_pred CCHHHHHHHHHhhCCCC
Q 015293 265 HGVEDIRDWILTKLPLG 281 (409)
Q Consensus 265 ~gi~~L~~~L~~~l~~~ 281 (409)
+||.+-+.|++..++..
T Consensus 173 egv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 173 EGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccHHHHHHHHHHHHhhc
Confidence 99999999999888754
No 261
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.43 E-value=2.9e-13 Score=146.40 Aligned_cols=109 Identities=24% Similarity=0.290 Sum_probs=76.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCC---------------ceEEEEEEEE----eCCCeeEEEEeCCCCchhhhhh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQ---------------TTRHRILGIC----SGPEYQMILYDTPGIIEKKIHM 176 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~---------------tt~~~~~~~~----~~~~~~i~liDtpG~~~~~~~~ 176 (409)
++|++++|||||+++|+.....+.....+ .|.......+ ..++.+++|+||||+.+
T Consensus 25 iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d----- 99 (731)
T PRK07560 25 IIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD----- 99 (731)
T ss_pred EEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC-----
Confidence 99999999999999998543322111111 1222111111 22468899999999644
Q ss_pred HhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCC
Q 015293 177 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 235 (409)
Q Consensus 177 l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~ 235 (409)
+...+..++..+|++|+|+|+..+...++..++..... .+.|.|+++||+|+.
T Consensus 100 ----f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~--~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 100 ----FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR--ERVKPVLFINKVDRL 152 (731)
T ss_pred ----hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH--cCCCeEEEEECchhh
Confidence 23456677889999999999999887777777766444 467889999999986
No 262
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.43 E-value=4.8e-12 Score=116.83 Aligned_cols=155 Identities=26% Similarity=0.305 Sum_probs=98.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC-CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~-~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|.+|||||||+++|.+..+..................... ...+.+|||+| +..++.+ +..+...+++
T Consensus 10 v~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~g--q~~~~~~-------~~~y~~~~~~ 80 (219)
T COG1100 10 VLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG--QEEYRSL-------RPEYYRGANG 80 (219)
T ss_pred EEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCC--HHHHHHH-------HHHHhcCCCE
Confidence 999999999999999999887532222212222222222221 46799999999 4444333 3345789999
Q ss_pred EEEEeeCCCCC--ChHHHHHHHHhccCC-CCCCEEEEEecCCCCChhhHHHH-------------HHHHHhcC--CCceE
Q 015293 195 IVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKK-------------LEWYEKFT--DVDEV 256 (409)
Q Consensus 195 illVvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilvlNK~Dl~~~~~~~~~-------------~~~~~~~~--~~~~i 256 (409)
+++|+|.+... ......+...+.... ...|+++|+||+|+......... ........ ....+
T Consensus 81 ~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (219)
T COG1100 81 ILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPAL 160 (219)
T ss_pred EEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccce
Confidence 99999998633 333333333333322 36899999999999765321110 00000001 12237
Q ss_pred EEcccC--CCCCHHHHHHHHHhhCC
Q 015293 257 IPVSAK--YGHGVEDIRDWILTKLP 279 (409)
Q Consensus 257 v~iSA~--~g~gi~~L~~~L~~~l~ 279 (409)
+.+||+ ++.|+.+++..+...+.
T Consensus 161 ~~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 161 LETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred eEeecccCCCcCHHHHHHHHHHHHH
Confidence 999999 99999999999887664
No 263
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.42 E-value=1.6e-12 Score=118.49 Aligned_cols=155 Identities=21% Similarity=0.250 Sum_probs=102.3
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhh
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 189 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~--~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~ 189 (409)
+++ ++|.+|||||+|+.++++..+. ..+.+|..+.....+. .....+.++||+| ++.+..+.. .++
T Consensus 4 ~kvvvlG~~gVGKSal~~qf~~~~f~--~~y~ptied~y~k~~~v~~~~~~l~ilDt~g--~~~~~~~~~-------~~~ 72 (196)
T KOG0395|consen 4 YKVVVLGAGGVGKSALTIQFLTGRFV--EDYDPTIEDSYRKELTVDGEVCMLEILDTAG--QEEFSAMRD-------LYI 72 (196)
T ss_pred eEEEEECCCCCCcchheeeecccccc--cccCCCccccceEEEEECCEEEEEEEEcCCC--cccChHHHH-------Hhh
Confidence 445 9999999999999999988874 4455555454444433 3445688999999 434333322 347
Q ss_pred cCcceEEEEeeCCCCCC--hHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHH-HHHHHhcCCCceEEEcccCCCC
Q 015293 190 INADCIVVLVDACKAPE--RIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKK-LEWYEKFTDVDEVIPVSAKYGH 265 (409)
Q Consensus 190 ~~aDvillVvD~~~~~~--~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~-~~~~~~~~~~~~iv~iSA~~g~ 265 (409)
..+|..++|+++++..+ .........++.. ....|+++|+||+|+.....+... ...+..... ++++.+||+.+.
T Consensus 73 ~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~-~~f~E~Sak~~~ 151 (196)
T KOG0395|consen 73 RNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWG-CAFIETSAKLNY 151 (196)
T ss_pred ccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcC-CcEEEeeccCCc
Confidence 78899999999987652 2222222221211 145799999999999763322211 112222222 358999999999
Q ss_pred CHHHHHHHHHhhCC
Q 015293 266 GVEDIRDWILTKLP 279 (409)
Q Consensus 266 gi~~L~~~L~~~l~ 279 (409)
+++++|..|...+.
T Consensus 152 ~v~~~F~~L~r~~~ 165 (196)
T KOG0395|consen 152 NVDEVFYELVREIR 165 (196)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987654
No 264
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.41 E-value=6.1e-13 Score=110.74 Aligned_cols=109 Identities=21% Similarity=0.324 Sum_probs=66.5
Q ss_pred EEecCCCChHHHHHHHhCCcce---eeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLS---IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~---~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
|+|.+|||||||+++|.+.... ......+.+..............+.+||++|. ......... .+..+
T Consensus 4 V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~--~~~~~~~~~-------~~~~~ 74 (119)
T PF08477_consen 4 VLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQ--EEFYSQHQF-------FLKKA 74 (119)
T ss_dssp EECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSS--HCHHCTSHH-------HHHHS
T ss_pred EECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCcc--ceecccccc-------hhhcC
Confidence 8999999999999999988765 12233333433333344444456899999995 222222111 26789
Q ss_pred ceEEEEeeCCCCCChHH-HHH---HHHhccCCCCCCEEEEEecCC
Q 015293 193 DCIVVLVDACKAPERID-EIL---EEGVGDHKDKLPILLVLNKKD 233 (409)
Q Consensus 193 DvillVvD~~~~~~~~~-~~l---~~~l~~~~~~~p~ilvlNK~D 233 (409)
|++++|+|++++..-.. ..+ +..++....+.|+++|+||.|
T Consensus 75 d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 75 DAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp CEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred cEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999987541111 111 122222225699999999998
No 265
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=6.3e-12 Score=104.98 Aligned_cols=151 Identities=19% Similarity=0.195 Sum_probs=107.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
.+|..++||||++.+|.......+.++.| +....+++.+..+++||..| +.. ++ .-++.++.....+
T Consensus 22 mlGLd~aGKTtiLyKLkl~~~~~~ipTvG----FnvetVtykN~kfNvwdvGG--qd~---iR----plWrhYy~gtqgl 88 (180)
T KOG0071|consen 22 MLGLDAAGKTTILYKLKLGQSVTTIPTVG----FNVETVTYKNVKFNVWDVGG--QDK---IR----PLWRHYYTGTQGL 88 (180)
T ss_pred EEecccCCceehhhHHhcCCCcccccccc----eeEEEEEeeeeEEeeeeccC--chh---hh----HHHHhhccCCceE
Confidence 89999999999999998766433333322 33445677889999999999 433 22 2356678999999
Q ss_pred EEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHH---hcCCCceEEEcccCCCCCHHH
Q 015293 196 VVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 196 llVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~---~~~~~~~iv~iSA~~g~gi~~ 269 (409)
|||+|+.+.. ++...++...+... ....|++|..||.|+..+....++...++ .....+-+.|+||.+|.|+.+
T Consensus 89 IFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 89 IFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred EEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence 9999987654 44445555554431 15789999999999986544444333332 222345689999999999999
Q ss_pred HHHHHHhhCC
Q 015293 270 IRDWILTKLP 279 (409)
Q Consensus 270 L~~~L~~~l~ 279 (409)
-+.||.+.+.
T Consensus 169 glswlsnn~~ 178 (180)
T KOG0071|consen 169 GLSWLSNNLK 178 (180)
T ss_pred HHHHHHhhcc
Confidence 9999988764
No 266
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.37 E-value=2e-11 Score=117.27 Aligned_cols=124 Identities=17% Similarity=0.250 Sum_probs=78.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeec--------CCCce-EEEEEEEEeCCC--eeEEEEeCCCCchhhh-----hhHhH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTN--------KPQTT-RHRILGICSGPE--YQMILYDTPGIIEKKI-----HMLDS 179 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~--------~~~tt-~~~~~~~~~~~~--~~i~liDtpG~~~~~~-----~~l~~ 179 (409)
++|.+|+|||||+|+|++..+..... ...|+ .......+..++ ..+.+|||||+.+... ..+..
T Consensus 9 vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~ 88 (276)
T cd01850 9 VVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVD 88 (276)
T ss_pred EEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHH
Confidence 99999999999999999988764432 23333 223333344445 4699999999865211 11111
Q ss_pred HHHHHHH------------Hhh--cCcceEEEEeeCCC-CCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHH
Q 015293 180 MMMKNVR------------SAG--INADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 242 (409)
Q Consensus 180 ~~~~~~~------------~~~--~~aDvillVvD~~~-~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~ 242 (409)
.+.++.. ..+ ..+|+++|+++.+. +....+..++..+. .++|+++|+||+|+....++..
T Consensus 89 yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~~e~~~ 163 (276)
T cd01850 89 YIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLS---KRVNIIPVIAKADTLTPEELKE 163 (276)
T ss_pred HHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHh---ccCCEEEEEECCCcCCHHHHHH
Confidence 1111110 111 15899999999874 55666566665554 3689999999999987655443
No 267
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.36 E-value=9.6e-12 Score=119.54 Aligned_cols=123 Identities=20% Similarity=0.289 Sum_probs=82.4
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhh--
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG-- 189 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~-- 189 (409)
..+ ++|.+|+||||++|+|+|...+.++...++|..........++..+.+|||||+.+.. .+.....+.+..++
T Consensus 39 ~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~--~~~e~~~~~ik~~l~~ 116 (313)
T TIGR00991 39 LTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG--YINDQAVNIIKRFLLG 116 (313)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH--HHHHHHHHHHHHHhhc
Confidence 344 9999999999999999999988778877766665555555678999999999986532 22222222232222
Q ss_pred cCcceEEEEeeCCC-CCChHHHHHHHHhccC-C--CCCCEEEEEecCCCCCh
Q 015293 190 INADCIVVLVDACK-APERIDEILEEGVGDH-K--DKLPILLVLNKKDLIKP 237 (409)
Q Consensus 190 ~~aDvillVvD~~~-~~~~~~~~l~~~l~~~-~--~~~p~ilvlNK~Dl~~~ 237 (409)
...|++|||..... .....+..+.+.+... + --.+.|+|+|++|..++
T Consensus 117 ~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 117 KTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred CCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 36899999955432 2344444444443332 1 23679999999998743
No 268
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.2e-11 Score=131.14 Aligned_cols=110 Identities=25% Similarity=0.265 Sum_probs=86.2
Q ss_pred EEecCCCChHHHHHHHhCCccee-----ee------------cCCCceEEEEEEEEeCCC-eeEEEEeCCCCchhhhhhH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-----VT------------NKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHML 177 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-----v~------------~~~~tt~~~~~~~~~~~~-~~i~liDtpG~~~~~~~~l 177 (409)
|+||..+|||||..+|+-....+ +. ..-|.|.......+.+.+ ..|+||||||+++
T Consensus 15 I~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD------ 88 (697)
T COG0480 15 IVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD------ 88 (697)
T ss_pred EEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc------
Confidence 99999999999999997432211 11 112334444444567775 9999999999876
Q ss_pred hHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 178 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 178 ~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
|...+..+++-+|.+++|+|+..+.+.+++.++..+.. .+.|.++++||+|+..
T Consensus 89 ---Ft~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~--~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 89 ---FTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK--YGVPRILFVNKMDRLG 142 (697)
T ss_pred ---cHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh--cCCCeEEEEECccccc
Confidence 44566777899999999999999999999999888777 7899999999999864
No 269
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=9.1e-12 Score=122.65 Aligned_cols=153 Identities=19% Similarity=0.142 Sum_probs=120.0
Q ss_pred EEecCCCChHHHHHHHhCCcce--eeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~--~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
..|+...|||||+.++.|..-. .-..+-|+|.|........++..+.|+|.||+.+ ++..+...+...|
T Consensus 5 t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~---------~i~~miag~~~~d 75 (447)
T COG3276 5 TAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPD---------FISNLLAGLGGID 75 (447)
T ss_pred EeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHH---------HHHHHHhhhcCCc
Confidence 5688999999999999987533 3456788999988888888888999999999532 5566777788999
Q ss_pred eEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhc--CCCceEEEcccCCCCCHHHHH
Q 015293 194 CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF--TDVDEVIPVSAKYGHGVEDIR 271 (409)
Q Consensus 194 villVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~--~~~~~iv~iSA~~g~gi~~L~ 271 (409)
.++||||+.++...++-+.+..++.+ .....++|+||+|+.+...+......+... ....+++++||.+|+||++|.
T Consensus 76 ~alLvV~~deGl~~qtgEhL~iLdll-gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk 154 (447)
T COG3276 76 YALLVVAADEGLMAQTGEHLLILDLL-GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELK 154 (447)
T ss_pred eEEEEEeCccCcchhhHHHHHHHHhc-CCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHH
Confidence 99999999999988887777766652 334559999999999765444433333222 233478999999999999999
Q ss_pred HHHHhhC
Q 015293 272 DWILTKL 278 (409)
Q Consensus 272 ~~L~~~l 278 (409)
+.|.++.
T Consensus 155 ~~l~~L~ 161 (447)
T COG3276 155 NELIDLL 161 (447)
T ss_pred HHHHHhh
Confidence 9999887
No 270
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.35 E-value=6e-12 Score=103.30 Aligned_cols=139 Identities=20% Similarity=0.254 Sum_probs=99.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
+||..|+|||||.++|.|...- +-.|.- +++.+ =-.+||||..-+ .+.+.......+.++|++
T Consensus 6 ~vG~~gcGKTtL~q~L~G~~~l-----ykKTQA-----ve~~d--~~~IDTPGEy~~-----~~~~Y~aL~tt~~dadvi 68 (148)
T COG4917 6 FVGQVGCGKTTLFQSLYGNDTL-----YKKTQA-----VEFND--KGDIDTPGEYFE-----HPRWYHALITTLQDADVI 68 (148)
T ss_pred EecccccCchhHHHHhhcchhh-----hcccce-----eeccC--ccccCCchhhhh-----hhHHHHHHHHHhhcccee
Confidence 8999999999999999997653 111111 11211 135899994221 123445555667899999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~ 275 (409)
++|-.+.++.+.....+... ..+|+|-|++|+|+....++.....++...+ ..++|.+|+.++.|+++|+++|.
T Consensus 69 ~~v~~and~~s~f~p~f~~~-----~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG-a~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 69 IYVHAANDPESRFPPGFLDI-----GVKKVIGVVTKADLAEDADISLVKRWLREAG-AEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred eeeecccCccccCCcccccc-----cccceEEEEecccccchHhHHHHHHHHHHcC-CcceEEEeccCcccHHHHHHHHH
Confidence 99999988765544333322 3466999999999997777777777776654 66899999999999999999997
Q ss_pred hh
Q 015293 276 TK 277 (409)
Q Consensus 276 ~~ 277 (409)
..
T Consensus 143 ~~ 144 (148)
T COG4917 143 SL 144 (148)
T ss_pred hh
Confidence 54
No 271
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.35 E-value=2.4e-12 Score=121.69 Aligned_cols=152 Identities=23% Similarity=0.210 Sum_probs=104.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEe-CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~-~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
+||++|+|||||+++|++.... ..+.-..|-|+...... ..|..+++.||-|+.+.-...|-+.| +.+......||+
T Consensus 183 vVGYTNaGKsTLikaLT~Aal~-p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF-~ATLeeVaeadl 260 (410)
T KOG0410|consen 183 VVGYTNAGKSTLIKALTKAALY-PNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAF-QATLEEVAEADL 260 (410)
T ss_pred EEeecCccHHHHHHHHHhhhcC-ccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHH-HHHHHHHhhcce
Confidence 9999999999999999966554 23444556554433322 24567899999999876555565555 455566789999
Q ss_pred EEEEeeCCCCC-ChHHHHHHHHhccCC-CCCC----EEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 195 IVVLVDACKAP-ERIDEILEEGVGDHK-DKLP----ILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 195 illVvD~~~~~-~~~~~~l~~~l~~~~-~~~p----~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
++.|+|+++|. +.+...++..++.+. +..| ++=|-||+|..+...-.+ . ...+++||++|.|++
T Consensus 261 llHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E---------~-n~~v~isaltgdgl~ 330 (410)
T KOG0410|consen 261 LLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE---------K-NLDVGISALTGDGLE 330 (410)
T ss_pred EEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc---------c-CCccccccccCccHH
Confidence 99999999987 445555555555532 1233 455677888654221000 1 126899999999999
Q ss_pred HHHHHHHhhCC
Q 015293 269 DIRDWILTKLP 279 (409)
Q Consensus 269 ~L~~~L~~~l~ 279 (409)
++++.+-..+.
T Consensus 331 el~~a~~~kv~ 341 (410)
T KOG0410|consen 331 ELLKAEETKVA 341 (410)
T ss_pred HHHHHHHHHhh
Confidence 99999877654
No 272
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.35 E-value=3.7e-13 Score=111.29 Aligned_cols=153 Identities=20% Similarity=0.200 Sum_probs=96.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCce-EEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt-~~~~~~~~~--~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++|.+++|||+|+-++....+-. .+...|. .+.....++ ....++.+|||+| ++.++++ +..++++|
T Consensus 2 llgds~~gktcllir~kdgafl~-~~fistvgid~rnkli~~~~~kvklqiwdtag--qerfrsv-------t~ayyrda 71 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLA-GNFISTVGIDFRNKLIDMDDKKVKLQIWDTAG--QERFRSV-------THAYYRDA 71 (192)
T ss_pred ccccCccCceEEEEEeccCceec-CceeeeeeeccccceeccCCcEEEEEEeeccc--hHHHhhh-------hHhhhccc
Confidence 68999999999987665433321 1111111 122222333 3446789999999 6665544 55678999
Q ss_pred ceEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 193 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 193 DvillVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~-~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
|.+++++|+.+.. +....|+.+. ..+ .....+.+++||||+.....+. ..-+.+.+..+ .|++.+||++|.|++
T Consensus 72 ~allllydiankasfdn~~~wlsei-~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~-ipfmetsaktg~nvd 149 (192)
T KOG0083|consen 72 DALLLLYDIANKASFDNCQAWLSEI-HEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYG-IPFMETSAKTGFNVD 149 (192)
T ss_pred ceeeeeeecccchhHHHHHHHHHHH-HHHHHhhHhHhhhccccccchhhccccchHHHHHHHHC-CCceeccccccccHh
Confidence 9999999998764 3334444332 222 1457789999999996532211 01111222223 378999999999999
Q ss_pred HHHHHHHhhCCC
Q 015293 269 DIRDWILTKLPL 280 (409)
Q Consensus 269 ~L~~~L~~~l~~ 280 (409)
--|-.|.+.+..
T Consensus 150 ~af~~ia~~l~k 161 (192)
T KOG0083|consen 150 LAFLAIAEELKK 161 (192)
T ss_pred HHHHHHHHHHHH
Confidence 999888876644
No 273
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.2e-11 Score=116.87 Aligned_cols=159 Identities=18% Similarity=0.230 Sum_probs=105.8
Q ss_pred EEecCCCChHHHHHHHhCCcce-----------eeecCCCceE-----------EEEEEEEeCCC------eeEEEEeCC
Q 015293 116 VLGKPNVGKSTLANQMIGQKLS-----------IVTNKPQTTR-----------HRILGICSGPE------YQMILYDTP 167 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~-----------~v~~~~~tt~-----------~~~~~~~~~~~------~~i~liDtp 167 (409)
++|+...|||||..+|.|.... +--.+..++. ......+...+ ..+.|+|+|
T Consensus 15 ~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VSfVDaP 94 (415)
T COG5257 15 MVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVSFVDAP 94 (415)
T ss_pred eeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEEEeeCC
Confidence 9999999999999999874211 1111111110 00001111111 358899999
Q ss_pred CCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCC-ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHH
Q 015293 168 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW 246 (409)
Q Consensus 168 G~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~-~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~ 246 (409)
| |+. ++..+.+...-.|.+++|++++.+. ++++.+.+-.+.-. .-+.+|+|-||+|+...+...+..+.
T Consensus 95 G--He~-------LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi-gik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 95 G--HET-------LMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII-GIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred c--hHH-------HHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh-ccceEEEEecccceecHHHHHHHHHH
Confidence 9 432 4556666667789999999998765 66666555444332 34679999999999987654443333
Q ss_pred HHhc-----CCCceEEEcccCCCCCHHHHHHHHHhhCCCCCCC
Q 015293 247 YEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAY 284 (409)
Q Consensus 247 ~~~~-----~~~~~iv~iSA~~g~gi~~L~~~L~~~l~~~~~~ 284 (409)
+.++ ....|++|+||..+.||+.|+++|.+.+|.....
T Consensus 165 Ik~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd 207 (415)
T COG5257 165 IKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERD 207 (415)
T ss_pred HHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccC
Confidence 3322 2345899999999999999999999999865543
No 274
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.35 E-value=9.2e-12 Score=136.45 Aligned_cols=109 Identities=23% Similarity=0.236 Sum_probs=80.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceE---------------EEEEEEEeC----------------CCeeEEEE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR---------------HRILGICSG----------------PEYQMILY 164 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~---------------~~~~~~~~~----------------~~~~i~li 164 (409)
|+|++++|||||+++|+.....+.....++++ ......+.+ .+..++|+
T Consensus 24 iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inli 103 (843)
T PLN00116 24 VIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYLINLI 103 (843)
T ss_pred EEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceEEEEE
Confidence 99999999999999998655432222222222 111111222 35778999
Q ss_pred eCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCC
Q 015293 165 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 235 (409)
Q Consensus 165 DtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~ 235 (409)
||||+.+ |...+..+++.+|++|+|+|+..+...+++.++..+.. .++|+++++||+|+.
T Consensus 104 DtPGh~d---------F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~--~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 104 DSPGHVD---------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG--ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCCCHHH---------HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH--CCCCEEEEEECCccc
Confidence 9999543 45556777899999999999999988888877776665 789999999999997
No 275
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.1e-11 Score=103.59 Aligned_cols=146 Identities=23% Similarity=0.290 Sum_probs=96.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceE-EEEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~-~~~~~~--~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++|.-|+|||+|+..+...++. .+-|+|-. .+...+ +.....++.+|||+| ++.++ .-.+++++.+
T Consensus 16 iigdmgvgkscllhqftekkfm--adcphtigvefgtriievsgqkiklqiwdtag--qerfr-------avtrsyyrga 84 (215)
T KOG0097|consen 16 IIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG--QERFR-------AVTRSYYRGA 84 (215)
T ss_pred EEccccccHHHHHHHHHHHHHh--hcCCcccceecceeEEEecCcEEEEEEeeccc--HHHHH-------HHHHHHhccc
Confidence 9999999999999999988875 33444321 122233 334456789999999 65544 3366778999
Q ss_pred ceEEEEeeCCCCCCh--HHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 193 DCIVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 193 DvillVvD~~~~~~~--~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~-~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
-..+.|+|.++.... ...|+.....--.++..++++.||.|+....++.- ....+....+. -++.+||++|.|+++
T Consensus 85 agalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl-~fle~saktg~nved 163 (215)
T KOG0097|consen 85 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGL-MFLEASAKTGQNVED 163 (215)
T ss_pred cceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCe-EEEEecccccCcHHH
Confidence 999999999876522 23344332211125677899999999976544321 12222222232 578999999999998
Q ss_pred HHHH
Q 015293 270 IRDW 273 (409)
Q Consensus 270 L~~~ 273 (409)
-|-.
T Consensus 164 afle 167 (215)
T KOG0097|consen 164 AFLE 167 (215)
T ss_pred HHHH
Confidence 6543
No 276
>PTZ00416 elongation factor 2; Provisional
Probab=99.31 E-value=1e-11 Score=135.92 Aligned_cols=109 Identities=21% Similarity=0.235 Sum_probs=80.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceE---------------EEEEEEEeCC----------CeeEEEEeCCCCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR---------------HRILGICSGP----------EYQMILYDTPGII 170 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~---------------~~~~~~~~~~----------~~~i~liDtpG~~ 170 (409)
++|++++|||||+++|+.....+.....++|+ +.....+.+. +..++|+||||+.
T Consensus 24 iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~ 103 (836)
T PTZ00416 24 VIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSPGHV 103 (836)
T ss_pred EECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcCCCHH
Confidence 99999999999999999754433222333332 1111112222 5679999999964
Q ss_pred hhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCC
Q 015293 171 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 235 (409)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~ 235 (409)
+ +...+..++..+|++|+|+|+..+...++..++..+.. .++|+|+++||+|+.
T Consensus 104 ~---------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~--~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 104 D---------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQ--ERIRPVLFINKVDRA 157 (836)
T ss_pred h---------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHH--cCCCEEEEEEChhhh
Confidence 3 44556777899999999999999998888888777665 678999999999997
No 277
>PLN00023 GTP-binding protein; Provisional
Probab=99.31 E-value=3.3e-11 Score=116.60 Aligned_cols=116 Identities=15% Similarity=0.163 Sum_probs=72.8
Q ss_pred eeE-EEecCCCChHHHHHHHhCCccee-eecCCCceEEEEEEEEe-------------CCCeeEEEEeCCCCchhhhhhH
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICS-------------GPEYQMILYDTPGIIEKKIHML 177 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~-v~~~~~tt~~~~~~~~~-------------~~~~~i~liDtpG~~~~~~~~l 177 (409)
.++ ++|..|||||||++++++..+.. ..++.+.+.......+. .....+.||||+| ++.+..+
T Consensus 22 iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAG--qErfrsL 99 (334)
T PLN00023 22 VRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSG--HERYKDC 99 (334)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCC--Chhhhhh
Confidence 344 99999999999999999876531 11222222211111111 1235689999999 5555444
Q ss_pred hHHHHHHHHHhhcCcceEEEEeeCCCCC--ChHHHHHHHHhccC------------CCCCCEEEEEecCCCCCh
Q 015293 178 DSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDH------------KDKLPILLVLNKKDLIKP 237 (409)
Q Consensus 178 ~~~~~~~~~~~~~~aDvillVvD~~~~~--~~~~~~l~~~l~~~------------~~~~p~ilvlNK~Dl~~~ 237 (409)
. ..+++.+|++|+|+|+++.. .....|+..+.... ..+.|++||+||+|+...
T Consensus 100 ~-------~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 100 R-------SLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred h-------HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 3 33488999999999998754 22333333332210 024899999999999653
No 278
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.29 E-value=9.3e-12 Score=115.03 Aligned_cols=165 Identities=15% Similarity=0.134 Sum_probs=99.3
Q ss_pred EEEecCCCChHHHHHHHhCCcceeeec-CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh--hhHhHHHHHHHHHhhcC
Q 015293 115 SVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~~~~~~v~~-~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~--~~l~~~~~~~~~~~~~~ 191 (409)
+|+|.+|+||||++|.|+|........ ....|..........++..+.++||||+.+... ..+...+.+.+......
T Consensus 4 lllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g 83 (212)
T PF04548_consen 4 LLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPG 83 (212)
T ss_dssp EEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-
T ss_pred EEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCC
Confidence 399999999999999999998765442 334455555555578889999999999965322 22333344444445667
Q ss_pred cceEEEEeeCCCCCChHHHHHHHHhcc-CC--CCCCEEEEEecCCCCChhhHHHH---------HHHHHhcCCCceEEEc
Q 015293 192 ADCIVVLVDACKAPERIDEILEEGVGD-HK--DKLPILLVLNKKDLIKPGEIAKK---------LEWYEKFTDVDEVIPV 259 (409)
Q Consensus 192 aDvillVvD~~~~~~~~~~~l~~~l~~-~~--~~~p~ilvlNK~Dl~~~~~~~~~---------~~~~~~~~~~~~iv~i 259 (409)
.|++|||+... ..+..+...++.+.. ++ --..++||++..|......+... ...+....+ .++.+
T Consensus 84 ~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~--R~~~f 160 (212)
T PF04548_consen 84 PHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGG--RYHVF 160 (212)
T ss_dssp ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT--CEEEC
T ss_pred CeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCC--EEEEE
Confidence 99999999998 454444444433332 11 12568999999998765443322 222333333 34444
Q ss_pred ccC------CCCCHHHHHHHHHhhCCCCC
Q 015293 260 SAK------YGHGVEDIRDWILTKLPLGP 282 (409)
Q Consensus 260 SA~------~g~gi~~L~~~L~~~l~~~~ 282 (409)
+.+ ....+.+|++.|-+++....
T Consensus 161 ~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 161 NNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 444 33568888888888776543
No 279
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=6.5e-11 Score=112.70 Aligned_cols=153 Identities=18% Similarity=0.248 Sum_probs=100.9
Q ss_pred EEecCCCChHHHHHHHhC--Ccce----eeecCCCceEEEEEEEEe---------CCCeeEEEEeCCCCchhhhhhHhHH
Q 015293 116 VLGKPNVGKSTLANQMIG--QKLS----IVTNKPQTTRHRILGICS---------GPEYQMILYDTPGIIEKKIHMLDSM 180 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~--~~~~----~v~~~~~tt~~~~~~~~~---------~~~~~i~liDtpG~~~~~~~~l~~~ 180 (409)
++|+..+|||||..+|.. ...+ ..|..-+.|.|.....+. ....++.++||||+. +
T Consensus 12 iLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa--s------- 82 (522)
T KOG0461|consen 12 ILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA--S------- 82 (522)
T ss_pred eEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH--H-------
Confidence 999999999999999963 2221 123333444443322222 223578999999942 2
Q ss_pred HHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhH----HHHHHHHHh------c
Q 015293 181 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI----AKKLEWYEK------F 250 (409)
Q Consensus 181 ~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~----~~~~~~~~~------~ 250 (409)
+++.+.....-.|+.++|+|+..+.+.+..+.+-.-.. .-...++|+||+|..+.... ++....+.+ .
T Consensus 83 LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~--~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f 160 (522)
T KOG0461|consen 83 LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL--LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF 160 (522)
T ss_pred HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh--hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence 56667777778899999999998876555443322111 23567899999998865332 222222221 2
Q ss_pred CCCceEEEcccCCC----CCHHHHHHHHHhhCC
Q 015293 251 TDVDEVIPVSAKYG----HGVEDIRDWILTKLP 279 (409)
Q Consensus 251 ~~~~~iv~iSA~~g----~gi~~L~~~L~~~l~ 279 (409)
.+..|++++||+.| +++.+|.+.|.+.+.
T Consensus 161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 161 DGNSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred CCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 34579999999999 899999999987764
No 280
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.28 E-value=1.3e-11 Score=112.93 Aligned_cols=156 Identities=22% Similarity=0.304 Sum_probs=112.7
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
.++ ++|.|.||||||+..+++.+-. ...+..||...+.+++.+++..+.++|.||+.......-.+ -+++.+..+.
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~Se-aA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGR--GRQviavArt 139 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSE-AASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGR--GRQVIAVART 139 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhh-hhceeeeEEEeecceEEecCceEEEecCcccccccccCCCC--CceEEEEeec
Confidence 345 9999999999999999988754 46788999999999999999999999999998744322111 1345566788
Q ss_pred cceEEEEeeCCCCCChH---HH----------------------------------------------------------
Q 015293 192 ADCIVVLVDACKAPERI---DE---------------------------------------------------------- 210 (409)
Q Consensus 192 aDvillVvD~~~~~~~~---~~---------------------------------------------------------- 210 (409)
||+++.|+|++...... ..
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ 219 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF 219 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence 99999999998654111 00
Q ss_pred -------HHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHHhhC
Q 015293 211 -------ILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 211 -------~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~~~l 278 (409)
.+...+.....-.+++.|.||+|...-++++. +...+ +-+-+||...-|++.|++.|.+.+
T Consensus 220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~eevdr----lAr~P---nsvViSC~m~lnld~lle~iWe~l 287 (364)
T KOG1486|consen 220 REDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIEEVDR----LARQP---NSVVISCNMKLNLDRLLERIWEEL 287 (364)
T ss_pred ecCCChHHHHHHHhccceEEEEEEEeeccceecHHHHHH----HhcCC---CcEEEEeccccCHHHHHHHHHHHh
Confidence 01111111113367899999999887655443 23322 346789999999999999999877
No 281
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=9.5e-12 Score=104.38 Aligned_cols=151 Identities=17% Similarity=0.219 Sum_probs=103.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|-.|+||||++.++--.++...-++++. ....+++++.++.+||..| +.+.. --++.++.+.|.+
T Consensus 23 ilgldGaGkttIlyrlqvgevvttkPtigf----nve~v~yKNLk~~vwdLgg--qtSir-------PyWRcYy~dt~av 89 (182)
T KOG0072|consen 23 ILGLDGAGKTTILYRLQVGEVVTTKPTIGF----NVETVPYKNLKFQVWDLGG--QTSIR-------PYWRCYYADTDAV 89 (182)
T ss_pred EeeccCCCeeEEEEEcccCcccccCCCCCc----CccccccccccceeeEccC--ccccc-------HHHHHHhcccceE
Confidence 899999999999988876655433333332 2334556788999999999 43322 2367789999999
Q ss_pred EEEeeCCCCC--ChHHHHHHHHhccCC-CCCCEEEEEecCCCCChhhHHH---HHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 196 VVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAK---KLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 196 llVvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilvlNK~Dl~~~~~~~~---~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
|+|||.++.. .....++...+..-. .+..+++++||.|........+ .+...+.....+.+|.+||.+|+|++.
T Consensus 90 IyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~ 169 (182)
T KOG0072|consen 90 IYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP 169 (182)
T ss_pred EEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence 9999998765 222333443343311 4577899999999864332222 222222222446899999999999999
Q ss_pred HHHHHHhhCC
Q 015293 270 IRDWILTKLP 279 (409)
Q Consensus 270 L~~~L~~~l~ 279 (409)
.++||.+-++
T Consensus 170 ~~DWL~~~l~ 179 (182)
T KOG0072|consen 170 AMDWLQRPLK 179 (182)
T ss_pred HHHHHHHHHh
Confidence 9999988765
No 282
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=9.8e-12 Score=105.87 Aligned_cols=153 Identities=18% Similarity=0.195 Sum_probs=96.9
Q ss_pred EEecCCCChHHHHHHHhCCcceee-ecCCCceEEEEEEEEeCC---------CeeEEEEeCCCCchhhhhhHhHHHHHHH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGP---------EYQMILYDTPGIIEKKIHMLDSMMMKNV 185 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v-~~~~~tt~~~~~~~~~~~---------~~~i~liDtpG~~~~~~~~l~~~~~~~~ 185 (409)
.+|.+||||||++.+.+..++... -.+.|........++... ...+.+|||+| ++.++++-..|
T Consensus 14 aLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAG--QERFRSLTTAF---- 87 (219)
T KOG0081|consen 14 ALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAG--QERFRSLTTAF---- 87 (219)
T ss_pred hhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeecccc--HHHHHHHHHHH----
Confidence 689999999999998887665310 000111100111111111 13578999999 77777765444
Q ss_pred HHhhcCcceEEEEeeCCCCC--ChHHHHHHHHhc-cCCCCCCEEEEEecCCCCChhhHHHH-HHHHHhcCCCceEEEccc
Q 015293 186 RSAGINADCIVVLVDACKAP--ERIDEILEEGVG-DHKDKLPILLVLNKKDLIKPGEIAKK-LEWYEKFTDVDEVIPVSA 261 (409)
Q Consensus 186 ~~~~~~aDvillVvD~~~~~--~~~~~~l~~~l~-~~~~~~p~ilvlNK~Dl~~~~~~~~~-~~~~~~~~~~~~iv~iSA 261 (409)
+++|=..++++|.++.. -....|+.++.. .+..+..+|+++||+|+.+...+... ...+....+. |+|.+||
T Consensus 88 ---fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kygl-PYfETSA 163 (219)
T KOG0081|consen 88 ---FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGL-PYFETSA 163 (219)
T ss_pred ---HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCC-Ceeeecc
Confidence 67788899999998654 223344444322 23466779999999999876554332 2223333343 8999999
Q ss_pred CCCCCHHHHHHHHHhhC
Q 015293 262 KYGHGVEDIRDWILTKL 278 (409)
Q Consensus 262 ~~g~gi~~L~~~L~~~l 278 (409)
-+|.||++-.+.|..++
T Consensus 164 ~tg~Nv~kave~Lldlv 180 (219)
T KOG0081|consen 164 CTGTNVEKAVELLLDLV 180 (219)
T ss_pred ccCcCHHHHHHHHHHHH
Confidence 99999998777776654
No 283
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.27 E-value=7.7e-12 Score=112.33 Aligned_cols=153 Identities=19% Similarity=0.186 Sum_probs=107.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC-C--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-E--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~-~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
+||..++|||+|+.......+. ..+..|..+.....+..+ + ..+.+|||+| ++.++.++.. .+.++
T Consensus 9 vVGDga~GKT~ll~~~t~~~fp--~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAG--qedYDrlRpl-------sY~~t 77 (198)
T KOG0393|consen 9 VVGDGAVGKTCLLISYTTNAFP--EEYVPTVFDNYSANVTVDDGKPVELGLWDTAG--QEDYDRLRPL-------SYPQT 77 (198)
T ss_pred EECCCCcCceEEEEEeccCcCc--ccccCeEEccceEEEEecCCCEEEEeeeecCC--Cccccccccc-------CCCCC
Confidence 9999999999999888766543 455555555554444442 3 4678999999 6677766532 57899
Q ss_pred ceEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh-HHHH------------HHHHHhcCCCceEE
Q 015293 193 DCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKK------------LEWYEKFTDVDEVI 257 (409)
Q Consensus 193 DvillVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~-~~~~------------~~~~~~~~~~~~iv 257 (409)
|++|++++..++. ......+...++.+.++.|+|+|++|.||..... .+.. ...+.+..+...++
T Consensus 78 dvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~ 157 (198)
T KOG0393|consen 78 DVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYL 157 (198)
T ss_pred CEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceee
Confidence 9999999988765 2323344445555568999999999999974321 1111 12223334556899
Q ss_pred EcccCCCCCHHHHHHHHHhhCC
Q 015293 258 PVSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 258 ~iSA~~g~gi~~L~~~L~~~l~ 279 (409)
.+||++..|+.+.|+.-....-
T Consensus 158 EcSa~tq~~v~~vF~~a~~~~l 179 (198)
T KOG0393|consen 158 ECSALTQKGVKEVFDEAIRAAL 179 (198)
T ss_pred eehhhhhCCcHHHHHHHHHHHh
Confidence 9999999999999988776553
No 284
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.27 E-value=2.6e-11 Score=101.43 Aligned_cols=152 Identities=20% Similarity=0.290 Sum_probs=105.1
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|-.|+||||++..|.+....-+.++.|...... ...+.+.+++||..| +.. ++ .-+..++.+.|.+
T Consensus 22 llGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v---~~~g~f~LnvwDiGG--qr~---IR----pyWsNYyenvd~l 89 (185)
T KOG0074|consen 22 LLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKV---EYDGTFHLNVWDIGG--QRG---IR----PYWSNYYENVDGL 89 (185)
T ss_pred EEecCCCcchhHHHHHccCChhhccccCCcceEEE---eecCcEEEEEEecCC--ccc---cc----hhhhhhhhccceE
Confidence 89999999999999999998876666655332222 222348999999999 432 22 2255678899999
Q ss_pred EEEeeCCCCC--ChHHHHHHHHhccCC-CCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCceEEEcccCCCCCHHH
Q 015293 196 VVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 196 llVvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~---~~~~~~iv~iSA~~g~gi~~ 269 (409)
|||+|.++.. ++..+.+.+++..-+ ...|+++..||.|++.+...+.....+.. ....+.+-.+||.+++|+.+
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~d 169 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTD 169 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccC
Confidence 9999976543 333344444443321 56899999999999865444433222111 11345788899999999999
Q ss_pred HHHHHHhhCC
Q 015293 270 IRDWILTKLP 279 (409)
Q Consensus 270 L~~~L~~~l~ 279 (409)
-.+|+.+...
T Consensus 170 g~~wv~sn~~ 179 (185)
T KOG0074|consen 170 GSDWVQSNPE 179 (185)
T ss_pred cchhhhcCCC
Confidence 9999887654
No 285
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=5.1e-11 Score=120.56 Aligned_cols=198 Identities=20% Similarity=0.235 Sum_probs=124.7
Q ss_pred EEecCCCChHHHHHHHhCC------------------------cceeee------cCCCceEEEEEEEEeCCCeeEEEEe
Q 015293 116 VLGKPNVGKSTLANQMIGQ------------------------KLSIVT------NKPQTTRHRILGICSGPEYQMILYD 165 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~------------------------~~~~v~------~~~~tt~~~~~~~~~~~~~~i~liD 165 (409)
++|+.++|||||+..|+.. .++.+- ..-|.|.+.....++.....++|+|
T Consensus 182 v~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~~~tliD 261 (603)
T KOG0458|consen 182 VLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSKIVTLID 261 (603)
T ss_pred EEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCceeEEEec
Confidence 9999999999999998621 011111 2234566666666777778899999
Q ss_pred CCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCC-------ChHHHHHHHHhccCCCCCCEEEEEecCCCCC--
Q 015293 166 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLPILLVLNKKDLIK-- 236 (409)
Q Consensus 166 tpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~-------~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~-- 236 (409)
+||+.+ |+..+......||++++|+|++.+. ..+..+...+++.+ .-..++|++||+|++.
T Consensus 262 aPGhkd---------Fi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L-gi~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 262 APGHKD---------FIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL-GISQLIVAINKMDLVSWS 331 (603)
T ss_pred CCCccc---------cchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc-CcceEEEEeecccccCcc
Confidence 999543 4455666678999999999998653 33555666666654 3467899999999985
Q ss_pred hhhHHHHH----HHHHhcCCC----ceEEEcccCCCCCHHHH---------------HHHHHhhCCCCCCCCCCccccCc
Q 015293 237 PGEIAKKL----EWYEKFTDV----DEVIPVSAKYGHGVEDI---------------RDWILTKLPLGPAYYPKDIVSEH 293 (409)
Q Consensus 237 ~~~~~~~~----~~~~~~~~~----~~iv~iSA~~g~gi~~L---------------~~~L~~~l~~~~~~~~~~~~t~~ 293 (409)
.+....+. .++.+..+| ..++|||+.+|+|+-.. +..|-. +. .| ....+.
T Consensus 332 q~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~-----~p-~~~~~k 404 (603)
T KOG0458|consen 332 QDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FK-----IP-ERPIDK 404 (603)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhh-cc-----CC-CCcccC
Confidence 32222222 222122333 26899999999998543 222222 11 11 111445
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCCeeEEE
Q 015293 294 PERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQ 337 (409)
Q Consensus 294 ~~r~~i~EiiRe~i~~~~~~eipys~~v~v~~~~~~~~~~~~i~ 337 (409)
|.+.-+.++.+ -+..+.+....++.+...++..++|.
T Consensus 405 Pl~ltIsdi~~-------~~~~~~~i~gkiesG~iq~gqkl~i~ 441 (603)
T KOG0458|consen 405 PLRLTISDIYP-------LPSSGVSISGKIESGYIQPGQKLYIM 441 (603)
T ss_pred CeEEEhhheee-------cCCCeeEEEEEEeccccccCCEEEEe
Confidence 66666666553 34555666777777776666555543
No 286
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.24 E-value=1.8e-11 Score=132.22 Aligned_cols=110 Identities=23% Similarity=0.263 Sum_probs=77.2
Q ss_pred EEecCCCChHHHHHHHhCCccee---------eecC------CCceEEEE----EEEEeCCCeeEEEEeCCCCchhhhhh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI---------VTNK------PQTTRHRI----LGICSGPEYQMILYDTPGIIEKKIHM 176 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~---------v~~~------~~tt~~~~----~~~~~~~~~~i~liDtpG~~~~~~~~ 176 (409)
++|+.++|||||+++|+.....+ ..+. .+.|.... ...+.+.+.+++||||||+.+
T Consensus 24 ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~----- 98 (720)
T TIGR00490 24 IVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD----- 98 (720)
T ss_pred EEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc-----
Confidence 99999999999999997431110 0111 22333221 122556788999999999643
Q ss_pred HhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 177 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 177 l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
+...+..++..+|++|+|+|+..+....+..++..+.. .+.|.++++||+|+..
T Consensus 99 ----f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 99 ----FGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred ----cHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHH--cCCCEEEEEEChhccc
Confidence 22345567889999999999998877766666665444 5788899999999863
No 287
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.23 E-value=1.1e-11 Score=109.04 Aligned_cols=149 Identities=17% Similarity=0.107 Sum_probs=97.1
Q ss_pred HHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCC
Q 015293 185 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 264 (409)
Q Consensus 185 ~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g 264 (409)
.+.++.+||++++|+|++.+.......+...+.....++|+++|+||+|+.++.........+.....+ .++++||+++
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~-~~~~iSa~~~ 80 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPT-IAFHASINNP 80 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcE-EEEEeecccc
Confidence 356688999999999999876554555555554422458999999999998766555555555554333 2688999999
Q ss_pred CCHHHHHHHHHhhCCCCCCCCCCccccCchHHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec------CCCeeEEEE
Q 015293 265 HGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTAKDFIQV 338 (409)
Q Consensus 265 ~gi~~L~~~L~~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~~~~eipys~~v~v~~~~~~------~~~~~~i~~ 338 (409)
.|+++|++.|.+.+..... + .. -.++....+++|+||.+|.+..... +++ .....
T Consensus 81 ~~~~~L~~~l~~~~~~~~~--~--------~~--------~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~-T~~~~ 141 (157)
T cd01858 81 FGKGSLIQLLRQFSKLHSD--K--------KQ--------ISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGE-TKVWQ 141 (157)
T ss_pred ccHHHHHHHHHHHHhhhcc--c--------cc--------eEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCe-eEeEE
Confidence 9999999999876531000 0 00 0122345788888888887654322 232 22111
Q ss_pred EEEEeeCCcceEEeecCC
Q 015293 339 EIVVEKNSQKIILIGKGG 356 (409)
Q Consensus 339 ~i~v~~~~~~~iliG~~G 356 (409)
.+ ..++...+++++|
T Consensus 142 ~~---~~~~~~~liDtPG 156 (157)
T cd01858 142 YI---TLMKRIYLIDCPG 156 (157)
T ss_pred EE---EcCCCEEEEECcC
Confidence 11 2345688999887
No 288
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.21 E-value=6.9e-11 Score=113.10 Aligned_cols=144 Identities=23% Similarity=0.215 Sum_probs=96.7
Q ss_pred EEecCCCChHHHHHHHhCCccee----------e----------------------ecCCCceEEEEEEEEeCCCeeEEE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI----------V----------------------TNKPQTTRHRILGICSGPEYQMIL 163 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~----------v----------------------~~~~~tt~~~~~~~~~~~~~~i~l 163 (409)
-.|...-||||||-+|+....++ . ....|.|.|..+..+.....+|++
T Consensus 11 TcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~KRkFIi 90 (431)
T COG2895 11 TCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEKRKFII 90 (431)
T ss_pred EeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccccceEEE
Confidence 78999999999999998543221 0 122366778777778888899999
Q ss_pred EeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChh--hHH
Q 015293 164 YDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIA 241 (409)
Q Consensus 164 iDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~--~~~ 241 (409)
.||||+.+ +.+.+....+.||+++++||+..+...++....-...-+ .=+.+++++||+||.+-. ..+
T Consensus 91 ADTPGHeQ---------YTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL-GIrhvvvAVNKmDLvdy~e~~F~ 160 (431)
T COG2895 91 ADTPGHEQ---------YTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL-GIRHVVVAVNKMDLVDYSEEVFE 160 (431)
T ss_pred ecCCcHHH---------HhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh-CCcEEEEEEeeecccccCHHHHH
Confidence 99999533 233444556789999999999988866554332221111 236789999999998632 222
Q ss_pred HHHHHH---HhcCC--CceEEEcccCCCCCHHH
Q 015293 242 KKLEWY---EKFTD--VDEVIPVSAKYGHGVED 269 (409)
Q Consensus 242 ~~~~~~---~~~~~--~~~iv~iSA~~g~gi~~ 269 (409)
.+...+ ....+ ...++|+||..|+|+-.
T Consensus 161 ~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 161 AIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 222222 12222 23689999999999843
No 289
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.20 E-value=2e-10 Score=111.73 Aligned_cols=104 Identities=20% Similarity=0.273 Sum_probs=65.5
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCCh
Q 015293 158 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 237 (409)
Q Consensus 158 ~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~ 237 (409)
++.++|+||||..+... ..+..+|.++++.+...+ .+. ..+...+ .++|.++|+||+|+...
T Consensus 126 g~D~viidT~G~~~~e~------------~i~~~aD~i~vv~~~~~~-~el-~~~~~~l----~~~~~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 126 GYDVIIVETVGVGQSEV------------DIANMADTFVVVTIPGTG-DDL-QGIKAGL----MEIADIYVVNKADGEGA 187 (300)
T ss_pred CCCEEEEeCCCCchhhh------------HHHHhhceEEEEecCCcc-HHH-HHHHHHH----hhhccEEEEEcccccch
Confidence 57899999999764221 125678999988654322 111 1122211 45788999999999865
Q ss_pred hhHHHHH-------HHHHhc-CCC-ceEEEcccCCCCCHHHHHHHHHhhCC
Q 015293 238 GEIAKKL-------EWYEKF-TDV-DEVIPVSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 238 ~~~~~~~-------~~~~~~-~~~-~~iv~iSA~~g~gi~~L~~~L~~~l~ 279 (409)
....... ..+... .++ .+++++||++|.|+++|+++|.+...
T Consensus 188 ~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 188 TNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred hHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 4321111 111111 111 25899999999999999999988643
No 290
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.20 E-value=7.8e-11 Score=110.57 Aligned_cols=158 Identities=26% Similarity=0.322 Sum_probs=76.5
Q ss_pred EEecCCCChHHHHHHHh------CCcceeeecCCCceEEEEEEEEeCC--------------------------------
Q 015293 116 VLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHRILGICSGP-------------------------------- 157 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~------~~~~~~v~~~~~tt~~~~~~~~~~~-------------------------------- 157 (409)
|+|++|+||||++.++. +.+..++.-.|+...-+....++..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~d 80 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENID 80 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHHH
Confidence 68999999999999985 4445545444443321111110000
Q ss_pred ---------CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhh--cCcceEEEEeeCCCCCChHH---HHHHHHhccCCCCC
Q 015293 158 ---------EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG--INADCIVVLVDACKAPERID---EILEEGVGDHKDKL 223 (409)
Q Consensus 158 ---------~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~--~~aDvillVvD~~~~~~~~~---~~l~~~l~~~~~~~ 223 (409)
...+.++||||..+ ....+..+ ......+ ...-++++++|+........ ..+....-....+.
T Consensus 81 ~l~~~i~~~~~~y~l~DtPGQiE--lf~~~~~~-~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~l 157 (238)
T PF03029_consen 81 WLDEEIEKYEDDYLLFDTPGQIE--LFTHSDSG-RKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLEL 157 (238)
T ss_dssp HHHHHHHHHH-SEEEEE--SSHH--HHHHSHHH-HHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhhcCCcEEEEeCCCCEE--EEEechhH-HHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCC
Confidence 12689999999543 22222222 1122223 34568999999876544322 11211111112579
Q ss_pred CEEEEEecCCCCChhhHHHHHHHHH---------------------h---cCCCc-eEEEcccCCCCCHHHHHHHHHhh
Q 015293 224 PILLVLNKKDLIKPGEIAKKLEWYE---------------------K---FTDVD-EVIPVSAKYGHGVEDIRDWILTK 277 (409)
Q Consensus 224 p~ilvlNK~Dl~~~~~~~~~~~~~~---------------------~---~~~~~-~iv~iSA~~g~gi~~L~~~L~~~ 277 (409)
|.|.|+||+|+.+.. .....+++. . ..+.. .++++|+.+++|+.+|+..|.+.
T Consensus 158 P~vnvlsK~Dl~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 158 PHVNVLSKIDLLSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp EEEEEE--GGGS-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred CEEEeeeccCcccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 999999999998732 111111111 0 11233 78999999999999999988754
No 291
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=2.6e-10 Score=102.26 Aligned_cols=153 Identities=25% Similarity=0.322 Sum_probs=93.5
Q ss_pred EEEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
+++|..++|||+|+-.|...... ...|...+..+.+..+.....++|.||+.. ++..+.+..... ..+-.
T Consensus 42 ll~Gl~dSGKT~LF~qL~~gs~~----~TvtSiepn~a~~r~gs~~~~LVD~PGH~r-----lR~kl~e~~~~~-~~aka 111 (238)
T KOG0090|consen 42 LLVGLSDSGKTSLFTQLITGSHR----GTVTSIEPNEATYRLGSENVTLVDLPGHSR-----LRRKLLEYLKHN-YSAKA 111 (238)
T ss_pred EEEecCCCCceeeeeehhcCCcc----CeeeeeccceeeEeecCcceEEEeCCCcHH-----HHHHHHHHcccc-cccee
Confidence 39999999999999998865321 112222333444555556689999999432 333333322211 37899
Q ss_pred EEEEeeCCCCCC---hHHHHHHHHhccC---CCCCCEEEEEecCCCCChhhHHHHHHHHHh-------------------
Q 015293 195 IVVLVDACKAPE---RIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIAKKLEWYEK------------------- 249 (409)
Q Consensus 195 illVvD~~~~~~---~~~~~l~~~l~~~---~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~------------------- 249 (409)
++||||+..... ...+.+...+-.. ..+.|+++++||.|+..+..-..+...+++
T Consensus 112 iVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed 191 (238)
T KOG0090|consen 112 IVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDED 191 (238)
T ss_pred EEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccc
Confidence 999999876542 3334444443322 257899999999999753322111111110
Q ss_pred ------------------cC-CCceEEEcccCCCCCHHHHHHHHHhhC
Q 015293 250 ------------------FT-DVDEVIPVSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 250 ------------------~~-~~~~iv~iSA~~g~gi~~L~~~L~~~l 278 (409)
.. ....+.+.|++++ +++++.+||.+.+
T Consensus 192 ~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 192 IAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred ccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 00 1125678899888 8999999987653
No 292
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.6e-10 Score=112.42 Aligned_cols=83 Identities=25% Similarity=0.346 Sum_probs=65.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC------------------eeEEEEeCCCCchhhh--h
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE------------------YQMILYDTPGIIEKKI--H 175 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~------------------~~i~liDtpG~~~~~~--~ 175 (409)
|||.||||||||+|+++... +...++|.||.++..++..... ..+.|+|.+|++.... .
T Consensus 7 IVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs~Ge 85 (372)
T COG0012 7 IVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGASKGE 85 (372)
T ss_pred EecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcccCC
Confidence 89999999999999999998 5579999999998888743221 2588999999987432 3
Q ss_pred hHhHHHHHHHHHhhcCcceEEEEeeCCC
Q 015293 176 MLDSMMMKNVRSAGINADCIVVLVDACK 203 (409)
Q Consensus 176 ~l~~~~~~~~~~~~~~aDvillVvD~~~ 203 (409)
.|...| +..++++|+++.|||+..
T Consensus 86 GLGNkF----L~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 86 GLGNKF----LDNIREVDAIIHVVRCFG 109 (372)
T ss_pred CcchHH----HHhhhhcCeEEEEEEecC
Confidence 454444 444689999999999974
No 293
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.18 E-value=1.4e-10 Score=114.23 Aligned_cols=160 Identities=18% Similarity=0.237 Sum_probs=99.8
Q ss_pred EEecCCCChHHHHHHHhCC----cce-----------eeecCCC---ceEEEEE---EE---EeC--CCeeEEEEeCCCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ----KLS-----------IVTNKPQ---TTRHRIL---GI---CSG--PEYQMILYDTPGI 169 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~----~~~-----------~v~~~~~---tt~~~~~---~~---~~~--~~~~i~liDtpG~ 169 (409)
++|+.|+|||||+|++.+. +.+ .+++.+| ||.++.. .- ... -..++.|+||+|+
T Consensus 22 vvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~ 101 (492)
T TIGR02836 22 VVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGY 101 (492)
T ss_pred EEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEECCCc
Confidence 9999999999999999998 766 6888888 7766554 11 111 2368999999998
Q ss_pred chhhh-hhHhH---HHH------------H----HHHHhhc-CcceEEEEe-eCC------CCCChHHHHHHHHhccCCC
Q 015293 170 IEKKI-HMLDS---MMM------------K----NVRSAGI-NADCIVVLV-DAC------KAPERIDEILEEGVGDHKD 221 (409)
Q Consensus 170 ~~~~~-~~l~~---~~~------------~----~~~~~~~-~aDvillVv-D~~------~~~~~~~~~l~~~l~~~~~ 221 (409)
..... ..++. +|+ + -++..+. .+|+.|+|. |.+ .........+.+.++. .
T Consensus 102 ~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~--~ 179 (492)
T TIGR02836 102 TVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE--L 179 (492)
T ss_pred ccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHh--c
Confidence 65321 11110 000 0 0445566 899999999 875 2334455566666676 7
Q ss_pred CCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCC--CCCHHHHHHHHHhhCC
Q 015293 222 KLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY--GHGVEDIRDWILTKLP 279 (409)
Q Consensus 222 ~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~--g~gi~~L~~~L~~~l~ 279 (409)
++|+++|+||+|-..+.. ......+....+ .+++++||.. .+.|..+++.+.-.+|
T Consensus 180 ~kPfiivlN~~dp~~~et-~~l~~~l~eky~-vpvl~v~c~~l~~~DI~~il~~vL~EFP 237 (492)
T TIGR02836 180 NKPFIILLNSTHPYHPET-EALRQELEEKYD-VPVLAMDVESMRESDILSVLEEVLYEFP 237 (492)
T ss_pred CCCEEEEEECcCCCCchh-HHHHHHHHHHhC-CceEEEEHHHcCHHHHHHHHHHHHhcCC
Confidence 899999999999432221 122222333233 4778888753 3444445554444333
No 294
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.18 E-value=5.4e-11 Score=106.27 Aligned_cols=113 Identities=27% Similarity=0.406 Sum_probs=63.1
Q ss_pred EEecCCCChHHHHHHHhCCccee-eecCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-v~~~~~tt~~~~~~~--~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
|+|++|+|||+|+..|....... ++.. ...... -...+..+.++|+||+ .. ++..+.+.. .....+
T Consensus 8 L~Gps~SGKTaLf~~L~~~~~~~T~tS~-----e~n~~~~~~~~~~~~~~lvD~PGH--~r---lr~~~~~~~-~~~~~~ 76 (181)
T PF09439_consen 8 LVGPSGSGKTALFSQLVNGKTVPTVTSM-----ENNIAYNVNNSKGKKLRLVDIPGH--PR---LRSKLLDEL-KYLSNA 76 (181)
T ss_dssp EE-STTSSHHHHHHHHHHSS---B---S-----SEEEECCGSSTCGTCECEEEETT---HC---CCHHHHHHH-HHHGGE
T ss_pred EEcCCCCCHHHHHHHHhcCCcCCeeccc-----cCCceEEeecCCCCEEEEEECCCc--HH---HHHHHHHhh-hchhhC
Confidence 99999999999999999774321 1111 111111 1124568999999994 32 333333321 236789
Q ss_pred ceEEEEeeCCCCCC---hHHHHHHHHhcc---CCCCCCEEEEEecCCCCChhh
Q 015293 193 DCIVVLVDACKAPE---RIDEILEEGVGD---HKDKLPILLVLNKKDLIKPGE 239 (409)
Q Consensus 193 DvillVvD~~~~~~---~~~~~l~~~l~~---~~~~~p~ilvlNK~Dl~~~~~ 239 (409)
-+||||+|++.... ...+.+...+.. .....|++|++||.|+.....
T Consensus 77 k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 77 KGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp EEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred CEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence 99999999874321 122233332221 236789999999999976443
No 295
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.17 E-value=2.1e-10 Score=101.43 Aligned_cols=110 Identities=27% Similarity=0.305 Sum_probs=69.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEE------------------------------------------
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI------------------------------------------ 153 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~------------------------------------------ 153 (409)
++|..++|||||+|+|+|.++..++..+.|..-.....
T Consensus 3 v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T PF00350_consen 3 VVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIEGK 82 (168)
T ss_dssp EEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHHTS
T ss_pred EEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccccc
Confidence 89999999999999999988654444333221110000
Q ss_pred -------------EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCCh-HHHHHHHHhccC
Q 015293 154 -------------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER-IDEILEEGVGDH 219 (409)
Q Consensus 154 -------------~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~-~~~~l~~~l~~~ 219 (409)
.......+.|+||||+.... .... +.+..++..+|++++|+++.+.... ....+.+....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~--~~~~---~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~- 156 (168)
T PF00350_consen 83 LEQISSKVIVISISSPLLRNLTLVDTPGLNSTN--SEHT---EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP- 156 (168)
T ss_dssp SS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSH--TTTS---HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT-
T ss_pred ccccccceeEEeeccccccceEEEeCCccccch--hhhH---HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC-
Confidence 01112348999999985411 1111 3355567899999999999987653 34445555554
Q ss_pred CCCCCEEEEEecC
Q 015293 220 KDKLPILLVLNKK 232 (409)
Q Consensus 220 ~~~~p~ilvlNK~ 232 (409)
....+++|+||+
T Consensus 157 -~~~~~i~V~nk~ 168 (168)
T PF00350_consen 157 -DKSRTIFVLNKA 168 (168)
T ss_dssp -TCSSEEEEEE-G
T ss_pred -CCCeEEEEEcCC
Confidence 455699999995
No 296
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=3.2e-10 Score=106.12 Aligned_cols=155 Identities=20% Similarity=0.213 Sum_probs=104.5
Q ss_pred EEecCCCChHHHHHHHhCCc----------ceeee-----cCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHH
Q 015293 116 VLGKPNVGKSTLANQMIGQK----------LSIVT-----NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSM 180 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~----------~~~v~-----~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~ 180 (409)
.+|+.+.|||||..+|+..- +.... ..-|.|.......++..+..+-.+||||+.+
T Consensus 17 tiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD--------- 87 (394)
T COG0050 17 TIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD--------- 87 (394)
T ss_pred EeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH---------
Confidence 88999999999999986321 11111 1234565555556677788899999999543
Q ss_pred HHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCC-EEEEEecCCCCChhhHHH--------HHHHHHhcC
Q 015293 181 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAK--------KLEWYEKFT 251 (409)
Q Consensus 181 ~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilvlNK~Dl~~~~~~~~--------~~~~~~~~~ 251 (409)
.+++......+.|.+|+|+.+.+++.+++.+..-+.+. .+.| +++++||+|+.+..++.+ .++.+....
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarq--vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~g 165 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ--VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPG 165 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhh--cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 34555555678999999999999998777766555555 5665 677899999997554332 222222222
Q ss_pred CCceEEEcccCCC-C-------CHHHHHHHHHhhCCCC
Q 015293 252 DVDEVIPVSAKYG-H-------GVEDIRDWILTKLPLG 281 (409)
Q Consensus 252 ~~~~iv~iSA~~g-~-------gi~~L~~~L~~~l~~~ 281 (409)
...|++.-||+.. + -|.+|++++.++++..
T Consensus 166 d~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~P 203 (394)
T COG0050 166 DDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTP 203 (394)
T ss_pred CCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCC
Confidence 3457787777643 2 3577888888777643
No 297
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.17 E-value=9.5e-11 Score=107.75 Aligned_cols=155 Identities=26% Similarity=0.336 Sum_probs=113.1
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++ ++|.|.+|||||+..|.|..-. |..+.+||-.++.+...+.+.++.+.|.||+.+...+.-.+ -+++....+.|
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~-vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgr--g~qviavartc 137 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSE-VAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGR--GKQVIAVARTC 137 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCc-cccccceeEEEecceEeccccceeeecCcchhcccccCCCC--ccEEEEEeecc
Confidence 45 9999999999999999997654 78899999999999999999999999999998754432211 13455567889
Q ss_pred ceEEEEeeCCCCCChHH---------------------------------------HH----------------------
Q 015293 193 DCIVVLVDACKAPERID---------------------------------------EI---------------------- 211 (409)
Q Consensus 193 DvillVvD~~~~~~~~~---------------------------------------~~---------------------- 211 (409)
.++++|+|+..+..... ..
T Consensus 138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT 217 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT 217 (358)
T ss_pred cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence 99999999987642100 00
Q ss_pred ---HHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHHhhC
Q 015293 212 ---LEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 212 ---l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~~~l 278 (409)
+...+.......|++.++||+|-..-++++- . ......+++||.++.|+++|++.+.+.+
T Consensus 218 ~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdi----i---~~iphavpISA~~~wn~d~lL~~mweyL 280 (358)
T KOG1487|consen 218 ADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDI----I---YTIPHAVPISAHTGWNFDKLLEKMWEYL 280 (358)
T ss_pred hhhhhhhhccCceeeeeeeeecccceeeeeccce----e---eeccceeecccccccchHHHHHHHhhcc
Confidence 0001111012478999999999876544321 1 1233579999999999999999999876
No 298
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.16 E-value=6.8e-10 Score=94.24 Aligned_cols=156 Identities=20% Similarity=0.211 Sum_probs=105.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC-C--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-E--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~-~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
+.|.-++|||+++..|+..+...-+....|-.|.....++.+ | .++.|.||.|+... .. +-.+.+++-+
T Consensus 14 VcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~-~~-------eLprhy~q~a 85 (198)
T KOG3883|consen 14 VCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG-QQ-------ELPRHYFQFA 85 (198)
T ss_pred EECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCc-hh-------hhhHhHhccC
Confidence 999999999999999987666545555556566555544432 2 47899999998543 22 2234557889
Q ss_pred ceEEEEeeCCCCCChHHHHH-HHHhccC--CCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 193 DCIVVLVDACKAPERIDEIL-EEGVGDH--KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 193 DvillVvD~~~~~~~~~~~l-~~~l~~~--~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
|..++|++..++..-+...+ ...+.+. +...|++++.||+|+..+.++.......-....-...+.++|.....+-+
T Consensus 86 DafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~e 165 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYE 165 (198)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhh
Confidence 99999999987653332222 2222222 25689999999999976544332221111112234679999999999999
Q ss_pred HHHHHHhhCC
Q 015293 270 IRDWILTKLP 279 (409)
Q Consensus 270 L~~~L~~~l~ 279 (409)
.|.+|...+.
T Consensus 166 pf~~l~~rl~ 175 (198)
T KOG3883|consen 166 PFTYLASRLH 175 (198)
T ss_pred HHHHHHHhcc
Confidence 9999998774
No 299
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.16 E-value=1.1e-10 Score=108.10 Aligned_cols=123 Identities=23% Similarity=0.296 Sum_probs=74.7
Q ss_pred eeEEEEeCCCCchh-hhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHH---HHHHH--HhccCCCCCCEEEEEecC
Q 015293 159 YQMILYDTPGIIEK-KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID---EILEE--GVGDHKDKLPILLVLNKK 232 (409)
Q Consensus 159 ~~i~liDtpG~~~~-~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~---~~l~~--~l~~~~~~~p~ilvlNK~ 232 (409)
.+.+++||||.+.- ....-...+.+... ....-++++|+|..+...+.. .++.. .+- +.+.|+|+|+||+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~la--ss~ptvv~YvvDt~rs~~p~tFMSNMlYAcSily--ktklp~ivvfNK~ 191 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLA--SSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILY--KTKLPFIVVFNKT 191 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHh--hcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHH--hccCCeEEEEecc
Confidence 45899999996541 11111112222222 235678999999865543322 22221 222 2689999999999
Q ss_pred CCCChhhHHHHH-------HHHHh-------------------cCCCceEEEcccCCCCCHHHHHHHHHhhCCCCCCCC
Q 015293 233 DLIKPGEIAKKL-------EWYEK-------------------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYY 285 (409)
Q Consensus 233 Dl~~~~~~~~~~-------~~~~~-------------------~~~~~~iv~iSA~~g~gi~~L~~~L~~~l~~~~~~~ 285 (409)
|+.+.....++. +.+.. +......+.+||.+|.|+++++..+.+.+.+....|
T Consensus 192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~y 270 (366)
T KOG1532|consen 192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEEY 270 (366)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHHh
Confidence 998764332222 11111 111235789999999999999999998886544444
No 300
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.16 E-value=4.3e-10 Score=116.52 Aligned_cols=121 Identities=19% Similarity=0.133 Sum_probs=79.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecC-CCceEEEEEEEEeCCCeeEEEEeCCCCchhhhh-hHhHHHHHHHHHhhc--C
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNK-PQTTRHRILGICSGPEYQMILYDTPGIIEKKIH-MLDSMMMKNVRSAGI--N 191 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~-~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~-~l~~~~~~~~~~~~~--~ 191 (409)
|+|.+|+|||||+|+|+|.+.+.++.. ++||+. .......++.++.+|||||+...... .....+.+.+...+. .
T Consensus 123 LVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~g 201 (763)
T TIGR00993 123 VLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNP 201 (763)
T ss_pred EECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999987766654 566664 33333456789999999999753221 233344455544444 5
Q ss_pred cceEEEEeeCCCCCC-hHHHHHHHHhcc-CCC--CCCEEEEEecCCCCCh
Q 015293 192 ADCIVVLVDACKAPE-RIDEILEEGVGD-HKD--KLPILLVLNKKDLIKP 237 (409)
Q Consensus 192 aDvillVvD~~~~~~-~~~~~l~~~l~~-~~~--~~p~ilvlNK~Dl~~~ 237 (409)
+|++|||........ ..+...++.+.. ++. -..+|||+|+.|..++
T Consensus 202 pDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 202 PDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred CCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 899999987653332 222223333322 221 2578999999999853
No 301
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.15 E-value=5e-11 Score=113.81 Aligned_cols=155 Identities=19% Similarity=0.222 Sum_probs=90.5
Q ss_pred EEecCCCChHHHHHHHhCC-----cceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 116 VLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~-----~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
|+|.||+|||||++.+++. ....+....++..|.. .+...+.+...+-|++..+ +...++..+...+.
T Consensus 109 l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~--rI~~~g~pvvqi~tG~~Ch-----l~a~mv~~Al~~L~ 181 (290)
T PRK10463 109 LVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAA--RIRATGTPAIQVNTGKGCH-----LDAQMIADAAPRLP 181 (290)
T ss_pred EECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHH--HHHhcCCcEEEecCCCCCc-----CcHHHHHHHHHHHh
Confidence 9999999999999887653 2222222333332211 1222334556666665443 22334444445455
Q ss_pred CcceEEEEeeCCCCC-ChHHHHHHHH--------hc------cCC--CCCCEEEEEecCCCCC--hhhHHHHHHHHHhcC
Q 015293 191 NADCIVVLVDACKAP-ERIDEILEEG--------VG------DHK--DKLPILLVLNKKDLIK--PGEIAKKLEWYEKFT 251 (409)
Q Consensus 191 ~aDvillVvD~~~~~-~~~~~~l~~~--------l~------~~~--~~~p~ilvlNK~Dl~~--~~~~~~~~~~~~~~~ 251 (409)
..+.-+++++..... .+....+-.. .. +++ -..+-++|+||+|+.+ ..++......+....
T Consensus 182 ~~~~d~liIEnvGnLvcPa~fdlge~~~v~vlsV~eg~dkplKyp~~f~~ADIVVLNKiDLl~~~~~dle~~~~~lr~ln 261 (290)
T PRK10463 182 LDDNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEGEDKPLKYPHMFAAASLMLLNKVDLLPYLNFDVEKCIACAREVN 261 (290)
T ss_pred hcCCcEEEEECCCCccCCCccchhhceeEEEEECccccccchhccchhhcCcEEEEEhHHcCcccHHHHHHHHHHHHhhC
Confidence 555555566654321 1110000000 00 000 1245699999999986 335666677777766
Q ss_pred CCceEEEcccCCCCCHHHHHHHHHhh
Q 015293 252 DVDEVIPVSAKYGHGVEDIRDWILTK 277 (409)
Q Consensus 252 ~~~~iv~iSA~~g~gi~~L~~~L~~~ 277 (409)
+..+++++||++|+|+++|++||.+.
T Consensus 262 p~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 262 PEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 77899999999999999999999764
No 302
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.15 E-value=8.5e-11 Score=109.43 Aligned_cols=178 Identities=21% Similarity=0.292 Sum_probs=97.7
Q ss_pred eeE-EEecCCCChHHHHHHHh------CCcceeeecCCC--ce------------------EEEEEEE------------
Q 015293 113 HKS-VLGKPNVGKSTLANQMI------GQKLSIVTNKPQ--TT------------------RHRILGI------------ 153 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~------~~~~~~v~~~~~--tt------------------~~~~~~~------------ 153 (409)
+.+ |.|.||+|||||+++|. |.+++.+.-.|. .| ..++...
T Consensus 30 ~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls~~ 109 (266)
T PF03308_consen 30 HVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLSRA 109 (266)
T ss_dssp EEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHHHH
T ss_pred eEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCccHh
Confidence 455 99999999999999985 445544322221 11 1122222
Q ss_pred -------EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCC--ChHHHHHHHHhccCCCCCC
Q 015293 154 -------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLP 224 (409)
Q Consensus 154 -------~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~--~~~~~~l~~~l~~~~~~~p 224 (409)
+...|+.++|+.|.|..+... ....-||.+++|+-...+. +....-+++. +
T Consensus 110 t~~~v~ll~aaG~D~IiiETVGvGQsE~------------~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------a 169 (266)
T PF03308_consen 110 TRDAVRLLDAAGFDVIIIETVGVGQSEV------------DIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------A 169 (266)
T ss_dssp HHHHHHHHHHTT-SEEEEEEESSSTHHH------------HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCccHH------------HHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------c
Confidence 223457899999999876321 1256799999999876554 3333333332 3
Q ss_pred EEEEEecCCCCChhhHH-HHHHHHHhc---CC--CceEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCccccC---chH
Q 015293 225 ILLVLNKKDLIKPGEIA-KKLEWYEKF---TD--VDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSE---HPE 295 (409)
Q Consensus 225 ~ilvlNK~Dl~~~~~~~-~~~~~~~~~---~~--~~~iv~iSA~~g~gi~~L~~~L~~~l~~~~~~~~~~~~t~---~~~ 295 (409)
=++|+||+|+...+... +....+... .. ..|++.+||.+|.|+++|.+.|.++..... ....... +..
T Consensus 170 Di~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~---~sg~~~~rr~~q~ 246 (266)
T PF03308_consen 170 DIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLK---ESGELEERRREQA 246 (266)
T ss_dssp SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHH---HTTHHHHHHHHHH
T ss_pred cEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHH---HcchHHHHHHHHH
Confidence 48999999965433222 122222211 11 248999999999999999999987542100 0000110 122
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 015293 296 RFFVGEIIREKIFMQYRN 313 (409)
Q Consensus 296 r~~i~EiiRe~i~~~~~~ 313 (409)
+.++.+.+++.+...++.
T Consensus 247 ~~~~~~~~~~~l~~~~~~ 264 (266)
T PF03308_consen 247 RREMWELIEEELLERLRA 264 (266)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344566677777665543
No 303
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.14 E-value=1.8e-10 Score=106.02 Aligned_cols=81 Identities=23% Similarity=0.277 Sum_probs=52.8
Q ss_pred cceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCCh--hhHHHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 192 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 192 aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~--~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
.+..+.|+|+.+........ ... ...|.++++||+|+... .........+....+..+++++||++|.|+++
T Consensus 124 ~~~~i~Vvd~~~~d~~~~~~----~~~--~~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~ 197 (207)
T TIGR00073 124 EHMRVVLLSVTEGDDKPLKY----PGM--FKEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDE 197 (207)
T ss_pred cCeEEEEEecCcccchhhhh----HhH--HhhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHH
Confidence 34455677776543221111 111 34678999999999753 22334444444444556899999999999999
Q ss_pred HHHHHHhhC
Q 015293 270 IRDWILTKL 278 (409)
Q Consensus 270 L~~~L~~~l 278 (409)
+++++.++.
T Consensus 198 l~~~i~~~~ 206 (207)
T TIGR00073 198 WLEFLEGQV 206 (207)
T ss_pred HHHHHHHhh
Confidence 999998753
No 304
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1e-10 Score=118.62 Aligned_cols=112 Identities=22% Similarity=0.267 Sum_probs=84.3
Q ss_pred EEecCCCChHHHHHHHhCCccee-----ee------------cCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-----VT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLD 178 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-----v~------------~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~ 178 (409)
+..+-.+||||+.++++.....+ |. ..-|.|.......+.|.+..+++|||||+.+....
T Consensus 44 i~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~E--- 120 (721)
T KOG0465|consen 44 ISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFE--- 120 (721)
T ss_pred eEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEE---
Confidence 88899999999999987432211 11 11233444444457788899999999998764432
Q ss_pred HHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChh
Q 015293 179 SMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 238 (409)
Q Consensus 179 ~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~ 238 (409)
+..+++.-|.+++|+|+..+.+.++..++..++. .+.|.|..+||+|+....
T Consensus 121 ------VeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r--y~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 121 ------VERALRVLDGAVLVLDAVAGVESQTETVWRQMKR--YNVPRICFINKMDRMGAS 172 (721)
T ss_pred ------ehhhhhhccCeEEEEEcccceehhhHHHHHHHHh--cCCCeEEEEehhhhcCCC
Confidence 3345678899999999999999999888888777 789999999999997543
No 305
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.11 E-value=8.3e-10 Score=103.40 Aligned_cols=77 Identities=18% Similarity=0.171 Sum_probs=56.8
Q ss_pred eeEEEEeCCCCchhh----hhhHhHHHHHHHHHhhc-CcceEEEEeeCCCCCChHH-HHHHHHhccCCCCCCEEEEEecC
Q 015293 159 YQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGI-NADCIVVLVDACKAPERID-EILEEGVGDHKDKLPILLVLNKK 232 (409)
Q Consensus 159 ~~i~liDtpG~~~~~----~~~l~~~~~~~~~~~~~-~aDvillVvD~~~~~~~~~-~~l~~~l~~~~~~~p~ilvlNK~ 232 (409)
..+.|+||||+.... ...+...+.+.+..+++ ..+++++|+|+.......+ ..+.+.++. .+.|+++|+||+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~--~~~rti~ViTK~ 202 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP--QGERTIGVITKL 202 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH--cCCcEEEEEECC
Confidence 568999999996421 13355556666778888 4569999999987765554 456666655 679999999999
Q ss_pred CCCCh
Q 015293 233 DLIKP 237 (409)
Q Consensus 233 Dl~~~ 237 (409)
|...+
T Consensus 203 D~~~~ 207 (240)
T smart00053 203 DLMDE 207 (240)
T ss_pred CCCCc
Confidence 99864
No 306
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=1.7e-10 Score=99.21 Aligned_cols=149 Identities=23% Similarity=0.195 Sum_probs=96.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|-.|+|||||++.|-......--+ |.++....+.+++..+..+|..|+.+ ..+-+..++..+|.+
T Consensus 25 FlGLDNAGKTTLLHMLKdDrl~qhvP----TlHPTSE~l~Ig~m~ftt~DLGGH~q---------Arr~wkdyf~~v~~i 91 (193)
T KOG0077|consen 25 FLGLDNAGKTTLLHMLKDDRLGQHVP----TLHPTSEELSIGGMTFTTFDLGGHLQ---------ARRVWKDYFPQVDAI 91 (193)
T ss_pred EEeecCCchhhHHHHHccccccccCC----CcCCChHHheecCceEEEEccccHHH---------HHHHHHHHHhhhcee
Confidence 99999999999999998877653333 44444556677889999999999533 123466778899999
Q ss_pred EEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHH---HHHHHhcC------------CCceEE
Q 015293 196 VVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKK---LEWYEKFT------------DVDEVI 257 (409)
Q Consensus 196 llVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~---~~~~~~~~------------~~~~iv 257 (409)
++.+|+-+.. .+...++..++..- -...|+++.+||+|...+....+. ...+.... ....++
T Consensus 92 v~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf 171 (193)
T KOG0077|consen 92 VYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF 171 (193)
T ss_pred EeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence 9999998654 22222221111110 157999999999999765322221 11111111 122578
Q ss_pred EcccCCCCCHHHHHHHHHhh
Q 015293 258 PVSAKYGHGVEDIRDWILTK 277 (409)
Q Consensus 258 ~iSA~~g~gi~~L~~~L~~~ 277 (409)
.||...+.|..+-+.|+..+
T Consensus 172 mcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 172 MCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEEEccCccceeeeehhhh
Confidence 88888888866666665543
No 307
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.06 E-value=8.4e-10 Score=111.80 Aligned_cols=152 Identities=18% Similarity=0.190 Sum_probs=103.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCC-ceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQ-TTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~-tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|..|+|||||+-+|+...+.. ..|. -.+-.+...++-+.....++||+.-.+ .. ......++.||+
T Consensus 14 liGD~G~GKtSLImSL~~eef~~--~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~-~~--------~~l~~EirkA~v 82 (625)
T KOG1707|consen 14 LIGDEGVGKTSLIMSLLEEEFVD--AVPRRLPRILIPADVTPENVPTSIVDTSSDSD-DR--------LCLRKEIRKADV 82 (625)
T ss_pred EECCCCccHHHHHHHHHhhhccc--cccccCCccccCCccCcCcCceEEEecccccc-hh--------HHHHHHHhhcCE
Confidence 99999999999999999887642 2211 111122233444556789999986322 11 123344789999
Q ss_pred EEEEeeCCCCC--ChHHHHHHHHhccCC---CCCCEEEEEecCCCCChhhH--H-HHHHHHHhcCCCceEEEcccCCCCC
Q 015293 195 IVVLVDACKAP--ERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEI--A-KKLEWYEKFTDVDEVIPVSAKYGHG 266 (409)
Q Consensus 195 illVvD~~~~~--~~~~~~l~~~l~~~~---~~~p~ilvlNK~Dl~~~~~~--~-~~~~~~~~~~~~~~iv~iSA~~g~g 266 (409)
+++|++++++. +.....|+.+++... .+.|+|+|+||+|....... + .+...+..+.....+|.|||++-.+
T Consensus 83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n 162 (625)
T KOG1707|consen 83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLAN 162 (625)
T ss_pred EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence 99999887643 444455667777654 67999999999998743221 1 2334444444555789999999999
Q ss_pred HHHHHHHHHhhC
Q 015293 267 VEDIRDWILTKL 278 (409)
Q Consensus 267 i~~L~~~L~~~l 278 (409)
+.+++.+-.+.+
T Consensus 163 ~~e~fYyaqKaV 174 (625)
T KOG1707|consen 163 VSELFYYAQKAV 174 (625)
T ss_pred hHhhhhhhhhee
Confidence 999998877655
No 308
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.04 E-value=3e-09 Score=99.09 Aligned_cols=159 Identities=14% Similarity=0.122 Sum_probs=89.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEe-CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~-~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|+.++||||+.+.+.++..+.-+..-+.|.+.....+. .+...+.+||+||.... ... .+.......++.+++
T Consensus 4 LmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~-~~~---~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 4 LMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDF-MEN---YFNSQREEIFSNVGV 79 (232)
T ss_dssp EEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCST-THT---THTCCHHHHHCTESE
T ss_pred EEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccc-ccc---cccccHHHHHhccCE
Confidence 8999999999999999987765445555555554444443 55679999999995321 111 111122234789999
Q ss_pred EEEEeeCCCCC-ChHHHHH---HHHhccCCCCCCEEEEEecCCCCChhhHHHHH--------HHHHhcC-CCceEEEccc
Q 015293 195 IVVLVDACKAP-ERIDEIL---EEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL--------EWYEKFT-DVDEVIPVSA 261 (409)
Q Consensus 195 illVvD~~~~~-~~~~~~l---~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~--------~~~~~~~-~~~~iv~iSA 261 (409)
+|||+|+.... ......+ ...+....++..+.+++.|+|+...+...... +...... ....++.||-
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 99999998433 2222222 22233334788999999999998755433222 1111111 1246788887
Q ss_pred CCCCCHHHHHHHHHhhCC
Q 015293 262 KYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 262 ~~g~gi~~L~~~L~~~l~ 279 (409)
.. +.+-+-+..+++.+-
T Consensus 160 ~D-~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLI 176 (232)
T ss_dssp TS-THHHHHHHHHHHTTS
T ss_pred cC-cHHHHHHHHHHHHHc
Confidence 76 566666666666553
No 309
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.03 E-value=2e-09 Score=101.69 Aligned_cols=149 Identities=21% Similarity=0.331 Sum_probs=88.7
Q ss_pred eeE-EEecCCCChHHHHHHHh------CCcceeeecCCC--ceEEEE------------------EEE------------
Q 015293 113 HKS-VLGKPNVGKSTLANQMI------GQKLSIVTNKPQ--TTRHRI------------------LGI------------ 153 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~------~~~~~~v~~~~~--tt~~~~------------------~~~------------ 153 (409)
+.+ |.|.||+|||||+.+|. |.+++.+.-.|. .|.-.+ ...
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~a 131 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRA 131 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhHH
Confidence 455 99999999999999985 444544322221 111111 110
Q ss_pred -------EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEE
Q 015293 154 -------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL 226 (409)
Q Consensus 154 -------~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~i 226 (409)
++-.|+.++|+.|.|..+..- ....-||.+++|.=..-+.+-+. +..-+ -..-=|
T Consensus 132 t~~~i~~ldAaG~DvIIVETVGvGQsev------------~I~~~aDt~~~v~~pg~GD~~Q~--iK~Gi----mEiaDi 193 (323)
T COG1703 132 TREAIKLLDAAGYDVIIVETVGVGQSEV------------DIANMADTFLVVMIPGAGDDLQG--IKAGI----MEIADI 193 (323)
T ss_pred HHHHHHHHHhcCCCEEEEEecCCCcchh------------HHhhhcceEEEEecCCCCcHHHH--HHhhh----hhhhhe
Confidence 223356799999999876321 11457899999886554432221 11111 123448
Q ss_pred EEEecCCCCChhh----HHHHHHHHH----hcCCCceEEEcccCCCCCHHHHHHHHHhhCC
Q 015293 227 LVLNKKDLIKPGE----IAKKLEWYE----KFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 227 lvlNK~Dl~~~~~----~~~~~~~~~----~~~~~~~iv~iSA~~g~gi~~L~~~L~~~l~ 279 (409)
+|+||.|+..... +...+.... ...-..|++.+||.+|+|+++|++.|.++..
T Consensus 194 ~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 194 IVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred eeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 9999999754322 122222221 1111237899999999999999999988664
No 310
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.03 E-value=2.7e-09 Score=95.08 Aligned_cols=78 Identities=19% Similarity=0.160 Sum_probs=53.9
Q ss_pred eEEEEeeCCCCCChHHHHHHHHhccCC-CCCCEEEEEecCCCCChh--hHHHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 194 CIVVLVDACKAPERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 194 villVvD~~~~~~~~~~~l~~~l~~~~-~~~p~ilvlNK~Dl~~~~--~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
+-++|+|++.+...-. +..+ -.+-=++|+||.|+.+.- +++.+........+..+++++|+++|+|++++
T Consensus 120 ~~v~VidvteGe~~P~-------K~gP~i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~ 192 (202)
T COG0378 120 LRVVVIDVTEGEDIPR-------KGGPGIFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEW 192 (202)
T ss_pred eEEEEEECCCCCCCcc-------cCCCceeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHH
Confidence 6777777776642210 0000 011348999999998643 34666666666777789999999999999999
Q ss_pred HHHHHhhC
Q 015293 271 RDWILTKL 278 (409)
Q Consensus 271 ~~~L~~~l 278 (409)
++++....
T Consensus 193 ~~~i~~~~ 200 (202)
T COG0378 193 LRFIEPQA 200 (202)
T ss_pred HHHHHhhc
Confidence 99987543
No 311
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.97 E-value=9.3e-10 Score=96.64 Aligned_cols=53 Identities=30% Similarity=0.444 Sum_probs=45.0
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCC
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 169 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~ 169 (409)
.+ ++|.||||||||+|+|++.+...+++.+|+|++...... +..+.++||||+
T Consensus 104 ~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 104 SVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred EEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc---CCCEEEEECcCC
Confidence 44 999999999999999999999899999999998665332 235899999995
No 312
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.96 E-value=9.2e-10 Score=98.27 Aligned_cols=51 Identities=35% Similarity=0.464 Sum_probs=45.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCC
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 169 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~ 169 (409)
++|.||||||||+|+|++.+.+.+++.||+|++.+..... .++.++||||+
T Consensus 122 ~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~---~~~~l~DtPGi 172 (172)
T cd04178 122 VVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD---KKVKLLDSPGI 172 (172)
T ss_pred EEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC---CCEEEEECcCC
Confidence 9999999999999999999998899999999987765542 46899999995
No 313
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.94 E-value=1.8e-09 Score=103.75 Aligned_cols=157 Identities=21% Similarity=0.232 Sum_probs=96.4
Q ss_pred HHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcc
Q 015293 181 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 260 (409)
Q Consensus 181 ~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iS 260 (409)
..+++...+..||++++|+|+..+.......+.+.+ .++|+++|+||+|+.+..........+... + .+++++|
T Consensus 11 ~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~-~-~~vi~iS 84 (276)
T TIGR03596 11 ARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR----GNKPRLIVLNKADLADPAVTKQWLKYFEEK-G-IKALAIN 84 (276)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH----CCCCEEEEEEccccCCHHHHHHHHHHHHHc-C-CeEEEEE
Confidence 346677788999999999999877655545555544 358999999999997654444444444331 2 3689999
Q ss_pred cCCCCCHHHHHHHHHhhCCCCCCCCCCccccCchHHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEe------cCCCee
Q 015293 261 AKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKT------RPTAKD 334 (409)
Q Consensus 261 A~~g~gi~~L~~~L~~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~~~~eipys~~v~v~~~~~------~~~~~~ 334 (409)
|+++.|+++|++.|.+.++.........-..... -+++-...+++|+||.+|.+.... .+++ +
T Consensus 85 a~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~----------~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~-T 153 (276)
T TIGR03596 85 AKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRP----------IRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGV-T 153 (276)
T ss_pred CCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCC----------eEEEEECCCCCCHHHHHHHHhCCCccccCCCCCe-e
Confidence 9999999999999988875422110000000000 012233467888888777654322 1221 2
Q ss_pred EEEEEEEEeeCCcceEEeecCCc
Q 015293 335 FIQVEIVVEKNSQKIILIGKGGK 357 (409)
Q Consensus 335 ~i~~~i~v~~~~~~~iliG~~G~ 357 (409)
...+.+.+ +.+..+++++|-
T Consensus 154 ~~~~~~~~---~~~~~l~DtPG~ 173 (276)
T TIGR03596 154 KGQQWIKL---SDGLELLDTPGI 173 (276)
T ss_pred cceEEEEe---CCCEEEEECCCc
Confidence 22122222 346788899886
No 314
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.93 E-value=2e-10 Score=99.80 Aligned_cols=148 Identities=17% Similarity=0.221 Sum_probs=94.3
Q ss_pred EEecCCCChHHHHHHHhCCcceee-ecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v-~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
|+|..+|||||++.+.+..-+..- ....++..-.-...+...+..+.+|||+| ++.++.+ +..+++.|.+
T Consensus 25 ivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtag--qeEfDaI-------tkAyyrgaqa 95 (246)
T KOG4252|consen 25 IVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAG--QEEFDAI-------TKAYYRGAQA 95 (246)
T ss_pred EECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhcc--chhHHHH-------HHHHhccccc
Confidence 999999999999999985433210 01111110000001223446678999999 6555544 4566899999
Q ss_pred EEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhH-----HHHHHHHHhcCCCceEEEcccCCCCCH
Q 015293 195 IVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-----AKKLEWYEKFTDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 195 illVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~-----~~~~~~~~~~~~~~~iv~iSA~~g~gi 267 (409)
.++|+..++.. +....|... .......+|.++|-||+|++....+ +.....+. ..++.+|++...|+
T Consensus 96 ~vLVFSTTDr~SFea~~~w~~k-v~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~-----~RlyRtSvked~NV 169 (246)
T KOG4252|consen 96 SVLVFSTTDRYSFEATLEWYNK-VQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLH-----KRLYRTSVKEDFNV 169 (246)
T ss_pred eEEEEecccHHHHHHHHHHHHH-HHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhh-----hhhhhhhhhhhhhh
Confidence 99999987654 222222222 2222267999999999999854332 22222221 24678999999999
Q ss_pred HHHHHHHHhhC
Q 015293 268 EDIRDWILTKL 278 (409)
Q Consensus 268 ~~L~~~L~~~l 278 (409)
...|.+|.+.+
T Consensus 170 ~~vF~YLaeK~ 180 (246)
T KOG4252|consen 170 MHVFAYLAEKL 180 (246)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 315
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.93 E-value=5.4e-09 Score=91.54 Aligned_cols=90 Identities=26% Similarity=0.154 Sum_probs=64.4
Q ss_pred HhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCC
Q 015293 187 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 266 (409)
Q Consensus 187 ~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~g 266 (409)
..+.+||++++|+|++++.......+...+.. .++|+++|+||+|+.+............ .. ..+++++||++|.|
T Consensus 8 ~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~-~~-~~~~~~iSa~~~~g 83 (156)
T cd01859 8 RIIKESDVVLEVLDARDPELTRSRKLERYVLE--LGKKLLIVLNKADLVPKEVLEKWKSIKE-SE-GIPVVYVSAKERLG 83 (156)
T ss_pred HHHhhCCEEEEEeeCCCCcccCCHHHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHHHHHH-hC-CCcEEEEEcccccc
Confidence 34567999999999987664444445444433 5789999999999976443332222222 22 24789999999999
Q ss_pred HHHHHHHHHhhCCC
Q 015293 267 VEDIRDWILTKLPL 280 (409)
Q Consensus 267 i~~L~~~L~~~l~~ 280 (409)
+++|++.|.+.++.
T Consensus 84 i~~L~~~l~~~~~~ 97 (156)
T cd01859 84 TKILRRTIKELAKI 97 (156)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998864
No 316
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=2e-09 Score=94.69 Aligned_cols=155 Identities=21% Similarity=0.271 Sum_probs=102.4
Q ss_pred EEecCCCChHHHHHHHhCCccee-eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|..++||||++++.+-..+.. ..++.|...+.....-..+...+..|||.| ++.+..++. .++=.+.+
T Consensus 15 lvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtag--qEk~gglrd-------gyyI~~qc 85 (216)
T KOG0096|consen 15 LVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAG--QEKKGGLRD-------GYYIQGQC 85 (216)
T ss_pred EecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeeccc--ceeeccccc-------ccEEecce
Confidence 99999999999999987666542 233444444544444334458899999999 444333322 12345678
Q ss_pred EEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHH
Q 015293 195 IVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 272 (409)
Q Consensus 195 illVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~ 272 (409)
+++++|+.... .....|..++.+. +.++|+++++||.|........+-.....+ ....++.+||+++.|.+.-|-
T Consensus 86 AiimFdVtsr~t~~n~~rwhrd~~rv-~~NiPiv~cGNKvDi~~r~~k~k~v~~~rk--knl~y~~iSaksn~NfekPFl 162 (216)
T KOG0096|consen 86 AIIMFDVTSRFTYKNVPRWHRDLVRV-RENIPIVLCGNKVDIKARKVKAKPVSFHRK--KNLQYYEISAKSNYNFERPFL 162 (216)
T ss_pred eEEEeeeeehhhhhcchHHHHHHHHH-hcCCCeeeeccceeccccccccccceeeec--ccceeEEeecccccccccchH
Confidence 88889987654 3344455554444 256899999999998654311111111111 234689999999999999999
Q ss_pred HHHhhCCCCC
Q 015293 273 WILTKLPLGP 282 (409)
Q Consensus 273 ~L~~~l~~~~ 282 (409)
||...+...|
T Consensus 163 ~LarKl~G~p 172 (216)
T KOG0096|consen 163 WLARKLTGDP 172 (216)
T ss_pred HHhhhhcCCC
Confidence 9999886544
No 317
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.90 E-value=3.9e-08 Score=94.53 Aligned_cols=129 Identities=14% Similarity=0.204 Sum_probs=74.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeee-cC-------CCce-EEEEEEEEeCCC--eeEEEEeCCCCchhh-----hhhHhH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVT-NK-------PQTT-RHRILGICSGPE--YQMILYDTPGIIEKK-----IHMLDS 179 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~-~~-------~~tt-~~~~~~~~~~~~--~~i~liDtpG~~~~~-----~~~l~~ 179 (409)
++|.+|+|||||+|.|++....... .. ..++ .......+..++ ..+.++||||+.+.- ...+..
T Consensus 9 VvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~ 88 (281)
T PF00735_consen 9 VVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWEPIVD 88 (281)
T ss_dssp EEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhHHHHH
Confidence 9999999999999999998654332 11 1111 122222333333 367899999986521 112222
Q ss_pred HHHHHHHHhh-------------cCcceEEEEeeCC-CCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHH
Q 015293 180 MMMKNVRSAG-------------INADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLE 245 (409)
Q Consensus 180 ~~~~~~~~~~-------------~~aDvillVvD~~-~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~ 245 (409)
.+.++...++ ...|++||+++++ ++..+.+...+..+. ...++|-|+.|+|.+...++..+..
T Consensus 89 yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls---~~vNvIPvIaKaD~lt~~el~~~k~ 165 (281)
T PF00735_consen 89 YIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLS---KRVNVIPVIAKADTLTPEELQAFKQ 165 (281)
T ss_dssp HHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHT---TTSEEEEEESTGGGS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhc---ccccEEeEEecccccCHHHHHHHHH
Confidence 2211111111 2469999999986 456777777766665 5689999999999998877765544
Q ss_pred HH
Q 015293 246 WY 247 (409)
Q Consensus 246 ~~ 247 (409)
.+
T Consensus 166 ~i 167 (281)
T PF00735_consen 166 RI 167 (281)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 318
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.90 E-value=1.3e-08 Score=93.11 Aligned_cols=81 Identities=21% Similarity=0.210 Sum_probs=55.5
Q ss_pred cceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCCh--hhHHHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 192 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 192 aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~--~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
+|.++.|+|+.+....... ... . -...-++++||+|+.+. ..+....+......+..+++++||++|+|+++
T Consensus 113 ~~~~i~vvD~~~~~~~~~~-~~~---q--i~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~e 186 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPRK-GGP---G--ITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDT 186 (199)
T ss_pred hCcEEEEEEcchhhhhhhh-hHh---H--hhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHH
Confidence 5789999999865442211 001 1 11233899999999852 33444445555544567899999999999999
Q ss_pred HHHHHHhhC
Q 015293 270 IRDWILTKL 278 (409)
Q Consensus 270 L~~~L~~~l 278 (409)
++++|.+.+
T Consensus 187 l~~~i~~~~ 195 (199)
T TIGR00101 187 VIDWIEHYA 195 (199)
T ss_pred HHHHHHhhc
Confidence 999998765
No 319
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.89 E-value=2.2e-09 Score=92.59 Aligned_cols=82 Identities=23% Similarity=0.172 Sum_probs=59.9
Q ss_pred HHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccC
Q 015293 183 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 262 (409)
Q Consensus 183 ~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~ 262 (409)
+.++.++..||++++|+|+..+.......+.+.+.....++|+++|+||+|+.+..........+.... .+++++||+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~--~~ii~iSa~ 80 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEG--IVVVFFSAL 80 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcC--CeEEEEEec
Confidence 456677899999999999988776555555555544224789999999999987655544445554432 478999999
Q ss_pred CCCC
Q 015293 263 YGHG 266 (409)
Q Consensus 263 ~g~g 266 (409)
++.+
T Consensus 81 ~~~~ 84 (141)
T cd01857 81 KENA 84 (141)
T ss_pred CCCc
Confidence 9876
No 320
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.87 E-value=5.8e-09 Score=97.26 Aligned_cols=159 Identities=21% Similarity=0.085 Sum_probs=100.7
Q ss_pred EEEecCCCChHHHHHHHhCCccee--eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh-hhHhHHHHHHHHHhh--
Q 015293 115 SVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-HMLDSMMMKNVRSAG-- 189 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~~~~~~--v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~-~~l~~~~~~~~~~~~-- 189 (409)
+++|.+|+|||+|||.++..+... .+.++|.|+......+ +..+.++|.||+....+ ..+-+.+..-+..++
T Consensus 140 ~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~le 216 (320)
T KOG2486|consen 140 AFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLE 216 (320)
T ss_pred eeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCCcccccCCccCcchHhHhHHHHHHh
Confidence 399999999999999999876433 2346777766544333 36789999999433111 111111111122222
Q ss_pred -cCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh------HHHHHHHHHhcC-----CCceEE
Q 015293 190 -INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------IAKKLEWYEKFT-----DVDEVI 257 (409)
Q Consensus 190 -~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~------~~~~~~~~~~~~-----~~~~iv 257 (409)
+.--.+.+++|++.+....+...++++.. .+.|..+|+||||...... .......+.... ...|.+
T Consensus 217 R~nLv~~FLLvd~sv~i~~~D~~~i~~~ge--~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~ 294 (320)
T KOG2486|consen 217 RENLVRVFLLVDASVPIQPTDNPEIAWLGE--NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWI 294 (320)
T ss_pred hhhhheeeeeeeccCCCCCCChHHHHHHhh--cCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCce
Confidence 23345677889998888888877888877 7899999999999863211 111111111111 112456
Q ss_pred EcccCCCCCHHHHHHHHHhhC
Q 015293 258 PVSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 258 ~iSA~~g~gi~~L~~~L~~~l 278 (409)
.+|+.++.|++.|+-.+.+..
T Consensus 295 ~~Ssvt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 295 YVSSVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred eeecccccCceeeeeehhhhh
Confidence 799999999999987776543
No 321
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.84 E-value=3.2e-09 Score=104.12 Aligned_cols=55 Identities=45% Similarity=0.649 Sum_probs=49.1
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 173 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~ 173 (409)
++|.||||||||||+|++.+.+.+++.||+|+..+..... ..+.|+||||+....
T Consensus 137 vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~---~~i~LlDtPGii~~~ 191 (322)
T COG1161 137 VVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD---DGIYLLDTPGIIPPK 191 (322)
T ss_pred EEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC---CCeEEecCCCcCCCC
Confidence 9999999999999999999999999999999998876665 348999999997643
No 322
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.84 E-value=1.8e-08 Score=89.85 Aligned_cols=93 Identities=26% Similarity=0.349 Sum_probs=68.1
Q ss_pred HHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcc
Q 015293 181 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 260 (409)
Q Consensus 181 ~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iS 260 (409)
.+++++..+..||++++|+|++.+.......+...+ .++|+++|+||+|+.+........+.+... ...++++|
T Consensus 9 ~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~--~~~vi~iS 82 (171)
T cd01856 9 ALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL----GNKPRIIVLNKADLADPKKTKKWLKYFESK--GEKVLFVN 82 (171)
T ss_pred HHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh----cCCCEEEEEehhhcCChHHHHHHHHHHHhc--CCeEEEEE
Confidence 456778889999999999999876644333344333 357999999999997654433333333322 23689999
Q ss_pred cCCCCCHHHHHHHHHhhCC
Q 015293 261 AKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 261 A~~g~gi~~L~~~L~~~l~ 279 (409)
|+++.|+++|.+.|.+.++
T Consensus 83 a~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 83 AKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred CCCcccHHHHHHHHHHHHH
Confidence 9999999999999998764
No 323
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.84 E-value=1.8e-08 Score=85.93 Aligned_cols=162 Identities=21% Similarity=0.288 Sum_probs=103.1
Q ss_pred EEecCCCChHHHHHHHhCCccee-eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|.+..|||||+-+.++..... -....|..-.-....+......+.+||..|. +. +.....-+..++-+
T Consensus 25 llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~--~~-------~~n~lPiac~dsva 95 (205)
T KOG1673|consen 25 LLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQ--RE-------FINMLPIACKDSVA 95 (205)
T ss_pred eecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCc--Hh-------hhccCceeecCcEE
Confidence 99999999999999998876531 1111111111111112223356789999994 32 33445556788999
Q ss_pred EEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCC---Chh---hHHHHHHHHHhcCCCceEEEcccCCCCC
Q 015293 195 IVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLI---KPG---EIAKKLEWYEKFTDVDEVIPVSAKYGHG 266 (409)
Q Consensus 195 illVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~---~~~---~~~~~~~~~~~~~~~~~iv~iSA~~g~g 266 (409)
++|++|.+++. .....|..+........+| |+|++|-|+. +++ .+......+.+..+ .+.+++|+.+..|
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mn-AsL~F~Sts~sIN 173 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMN-ASLFFCSTSHSIN 173 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhC-CcEEEeecccccc
Confidence 99999998765 3444555444332113344 6789999974 222 12222233444333 4789999999999
Q ss_pred HHHHHHHHHhhCCCCCCCCCCc
Q 015293 267 VEDIRDWILTKLPLGPAYYPKD 288 (409)
Q Consensus 267 i~~L~~~L~~~l~~~~~~~~~~ 288 (409)
+..+|..+...+..-||..|..
T Consensus 174 v~KIFK~vlAklFnL~~ti~~~ 195 (205)
T KOG1673|consen 174 VQKIFKIVLAKLFNLPWTIPEI 195 (205)
T ss_pred HHHHHHHHHHHHhCCceecccc
Confidence 9999999998888888876643
No 324
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=2.5e-08 Score=103.67 Aligned_cols=110 Identities=24% Similarity=0.283 Sum_probs=80.5
Q ss_pred EEEecCCCChHHHHHHHhCCcceeeecCCCceEEEE-------EE------E--EeCCCeeEEEEeCCCCchhhhhhHhH
Q 015293 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI-------LG------I--CSGPEYQMILYDTPGIIEKKIHMLDS 179 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~-------~~------~--~~~~~~~i~liDtpG~~~~~~~~l~~ 179 (409)
+++.|...|||||.+.|+..+..+-+...|+-|..- .+ . ...++..++|||+||+.+
T Consensus 13 ~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd-------- 84 (887)
T KOG0467|consen 13 CLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD-------- 84 (887)
T ss_pred EEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc--------
Confidence 399999999999999999877654444444433211 01 1 223678899999999776
Q ss_pred HHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCC
Q 015293 180 MMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 235 (409)
Q Consensus 180 ~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~ 235 (409)
|...+..+...||.+++++|+..+...++..+++..-. .+...++|+||+|++
T Consensus 85 -f~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~--~~~~~~lvinkidrl 137 (887)
T KOG0467|consen 85 -FSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI--EGLKPILVINKIDRL 137 (887)
T ss_pred -hhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH--ccCceEEEEehhhhH
Confidence 33456667889999999999999998887777653322 567789999999953
No 325
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.83 E-value=1.5e-08 Score=100.07 Aligned_cols=157 Identities=20% Similarity=0.151 Sum_probs=85.7
Q ss_pred EEecCCCChHHHHHHHhCCc----ceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 116 VLGKPNVGKSTLANQMIGQK----LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~----~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
|+|.+|+|||||||+|.|-. .+.......||........ ..-..+.+||.||+.... ...... .+.. .+..
T Consensus 40 V~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~-f~~~~Y-l~~~--~~~~ 114 (376)
T PF05049_consen 40 VTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPN-FPPEEY-LKEV--KFYR 114 (376)
T ss_dssp EEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS---HHHH-HHHT--TGGG
T ss_pred EECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCC-CCHHHH-HHHc--cccc
Confidence 99999999999999998732 2212222234444333322 222468999999985422 222222 2222 3668
Q ss_pred cceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCC-C------h-----hh-HHHH----HHHHHhcC-CC
Q 015293 192 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-K------P-----GE-IAKK----LEWYEKFT-DV 253 (409)
Q Consensus 192 aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~-~------~-----~~-~~~~----~~~~~~~~-~~ 253 (409)
.|.+|++.+. .....+.++...++. .++|+.+|-+|+|.. . + .. +..+ .+.+.+.. ..
T Consensus 115 yD~fiii~s~--rf~~ndv~La~~i~~--~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~ 190 (376)
T PF05049_consen 115 YDFFIIISSE--RFTENDVQLAKEIQR--MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSE 190 (376)
T ss_dssp -SEEEEEESS--S--HHHHHHHHHHHH--TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS
T ss_pred cCEEEEEeCC--CCchhhHHHHHHHHH--cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCc
Confidence 8988887753 355666777777776 789999999999961 0 0 01 1121 22222221 23
Q ss_pred ceEEEcccCCC--CCHHHHHHHHHhhCCCC
Q 015293 254 DEVIPVSAKYG--HGVEDIRDWILTKLPLG 281 (409)
Q Consensus 254 ~~iv~iSA~~g--~gi~~L~~~L~~~l~~~ 281 (409)
.++|.+|+..- .....|.+.|..-+|..
T Consensus 191 P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 191 PQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp --EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred CceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 47899998764 56889999999888753
No 326
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=4.5e-08 Score=93.52 Aligned_cols=154 Identities=21% Similarity=0.190 Sum_probs=101.9
Q ss_pred EEecCCCChHHHHHHHhCC-------c---ce-----eeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHH
Q 015293 116 VLGKPNVGKSTLANQMIGQ-------K---LS-----IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSM 180 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~-------~---~~-----~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~ 180 (409)
-+|+...|||||..+|+.. + +. .-...-|.|......-++.....+--+||||+.+
T Consensus 59 TIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD--------- 129 (449)
T KOG0460|consen 59 TIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD--------- 129 (449)
T ss_pred ccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH---------
Confidence 7899999999999998621 1 11 1112234455444444455556788899999543
Q ss_pred HHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCC-CCEEEEEecCCCCChhhHH--------HHHHHHHhcC
Q 015293 181 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLIKPGEIA--------KKLEWYEKFT 251 (409)
Q Consensus 181 ~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~-~p~ilvlNK~Dl~~~~~~~--------~~~~~~~~~~ 251 (409)
+++.......+-|.+|+||.+++++-+++.+.+-+.+. -+ ..+++.+||.|+.+..+.. +.+..+...+
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQ--VGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQ--VGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHH--cCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 45566666778899999999999998887776655555 34 4577889999999544332 2233333333
Q ss_pred CCceEEEcccCC---C----C---CHHHHHHHHHhhCCC
Q 015293 252 DVDEVIPVSAKY---G----H---GVEDIRDWILTKLPL 280 (409)
Q Consensus 252 ~~~~iv~iSA~~---g----~---gi~~L~~~L~~~l~~ 280 (409)
...|++.-||+. | . .|..|++.+-+++|.
T Consensus 208 d~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~ 246 (449)
T KOG0460|consen 208 DNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPT 246 (449)
T ss_pred CCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCC
Confidence 456888877754 3 1 267777777777764
No 327
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.82 E-value=3.7e-09 Score=102.19 Aligned_cols=92 Identities=24% Similarity=0.361 Sum_probs=69.0
Q ss_pred HHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEccc
Q 015293 182 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 261 (409)
Q Consensus 182 ~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA 261 (409)
.+++...+..||++|+|+|+..+.......+...+ .++|+++|+||+|+.+..........+... + .+++++||
T Consensus 15 ~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~-~-~~vi~vSa 88 (287)
T PRK09563 15 RREIKENLKLVDVVIEVLDARIPLSSENPMIDKII----GNKPRLLILNKSDLADPEVTKKWIEYFEEQ-G-IKALAINA 88 (287)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHh----CCCCEEEEEEchhcCCHHHHHHHHHHHHHc-C-CeEEEEEC
Confidence 45667778999999999999887655555555544 368999999999997654344444444322 2 36899999
Q ss_pred CCCCCHHHHHHHHHhhCC
Q 015293 262 KYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 262 ~~g~gi~~L~~~L~~~l~ 279 (409)
+++.|+++|++.|.+.++
T Consensus 89 ~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 89 KKGQGVKKILKAAKKLLK 106 (287)
T ss_pred CCcccHHHHHHHHHHHHH
Confidence 999999999999988765
No 328
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.81 E-value=2.1e-08 Score=90.90 Aligned_cols=95 Identities=25% Similarity=0.294 Sum_probs=64.9
Q ss_pred HHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHH-HHHHH-----Hhc-CCC
Q 015293 181 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWY-----EKF-TDV 253 (409)
Q Consensus 181 ~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~-~~~~~-----~~~-~~~ 253 (409)
+...+..++..+|++++|+|+++........+.. .. .++|+++|+||+|+.+...... ...+. ... ...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~--~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FG--GNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKP 99 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhHHH--hc--CCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCc
Confidence 3455666789999999999998765443333321 12 4689999999999975332111 11111 111 122
Q ss_pred ceEEEcccCCCCCHHHHHHHHHhhCC
Q 015293 254 DEVIPVSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 254 ~~iv~iSA~~g~gi~~L~~~L~~~l~ 279 (409)
.+++++||++|.|+++|+++|.+.++
T Consensus 100 ~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 100 KDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 46899999999999999999999876
No 329
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.80 E-value=4.6e-08 Score=94.80 Aligned_cols=109 Identities=18% Similarity=0.241 Sum_probs=75.5
Q ss_pred eEEEEeCCCCchhhhhhHhHHHHHHHHHh--hcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCCh
Q 015293 160 QMILYDTPGIIEKKIHMLDSMMMKNVRSA--GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 237 (409)
Q Consensus 160 ~i~liDtpG~~~~~~~~l~~~~~~~~~~~--~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~ 237 (409)
-+.|+||.| |++. .+.+... -+..|-.++++-+.++++....+.+-.+-. .+.|+++|++|+|+.+.
T Consensus 202 lVsfVDtvG--HEpw-------LrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a--~~lPviVvvTK~D~~~d 270 (527)
T COG5258 202 LVSFVDTVG--HEPW-------LRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALA--MELPVIVVVTKIDMVPD 270 (527)
T ss_pred EEEEEecCC--ccHH-------HHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhh--hcCCEEEEEEecccCcH
Confidence 478999999 4432 1222211 357899999999999998877776665544 68999999999999876
Q ss_pred hhHHHHHHHHHh---------------------------cCCCceEEEcccCCCCCHHHHHHHHHhhCCC
Q 015293 238 GEIAKKLEWYEK---------------------------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPL 280 (409)
Q Consensus 238 ~~~~~~~~~~~~---------------------------~~~~~~iv~iSA~~g~gi~~L~~~L~~~l~~ 280 (409)
+.+....+.+.. .....|+|.+|+.||+|++-|.+.+. ++|.
T Consensus 271 dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~-~Lp~ 339 (527)
T COG5258 271 DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL-LLPK 339 (527)
T ss_pred HHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH-hCCc
Confidence 544332222111 11256899999999999987766654 4443
No 330
>PF07650 KH_2: KH domain syndrome, contains KH motifs.; InterPro: IPR004044 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-2 KH domain include eukaryotic and prokaryotic S3 family of ribosomal proteins, and the prokaryotic GTP-binding protein, era.; GO: 0003723 RNA binding; PDB: 2XR1_B 3OAR_C 3OFX_C 1VS7_C 3I1O_C 2WWL_C 3R8O_C 2QAL_C 3J00_C 3J0V_F ....
Probab=98.77 E-value=6.8e-09 Score=80.22 Aligned_cols=53 Identities=43% Similarity=0.660 Sum_probs=50.4
Q ss_pred EEEEEeeCCcceEEeecCCchHHHHHHHHHHHHHHHcCCcEEEEEEEEeCCCcc
Q 015293 338 VEIVVEKNSQKIILIGKGGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWR 391 (409)
Q Consensus 338 ~~i~v~~~~~~~iliG~~G~~ik~i~~~ar~~l~~~~~~~v~l~l~vkv~~~w~ 391 (409)
+.+++.+.+|+.++||++|++|++|+..++++|+.+++++|+|+++ +|++.||
T Consensus 26 ~~~i~i~~~~~~ivIGk~G~~ik~i~~~~~k~l~~~~~~~V~l~v~-~V~~~~~ 78 (78)
T PF07650_consen 26 QIIIVIKASQPGIVIGKKGSNIKKIREELRKELEKLLNKKVFLNVV-KVKKPWR 78 (78)
T ss_dssp EEEEEEEESSHHHHHTGGGHHHHHHHHHHHHHHHHHCSSSEEEEEE-EESSCGG
T ss_pred eEEEEEeCCCccHhHHhhhHHHHHHHHHHHHHHhhcCCCcEEEEEE-EecCCCC
Confidence 4467889999999999999999999999999999999999999999 9999997
No 331
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.76 E-value=5.2e-08 Score=93.24 Aligned_cols=83 Identities=28% Similarity=0.336 Sum_probs=65.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC-----------------eeEEEEeCCCCchhhh--hh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKKI--HM 176 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~-----------------~~i~liDtpG~~~~~~--~~ 176 (409)
|||.||+||||++|+|+..+.. ..++|.+|.++..+.+...+ ..+.+.|++|+...+. ..
T Consensus 25 IVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~G 103 (391)
T KOG1491|consen 25 IVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEG 103 (391)
T ss_pred EeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcccCcC
Confidence 9999999999999999999987 89999999998877654322 2589999999976432 33
Q ss_pred HhHHHHHHHHHhhcCcceEEEEeeCCC
Q 015293 177 LDSMMMKNVRSAGINADCIVVLVDACK 203 (409)
Q Consensus 177 l~~~~~~~~~~~~~~aDvillVvD~~~ 203 (409)
|...| ++.++.+|.++.|+++..
T Consensus 104 LGN~F----Ls~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 104 LGNKF----LSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred chHHH----HHhhhhccceeEEEEecC
Confidence 44444 445678999999999864
No 332
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.76 E-value=3.8e-08 Score=86.20 Aligned_cols=83 Identities=23% Similarity=0.263 Sum_probs=60.6
Q ss_pred ceEEEEeeCCCCCChHHHHHH-HHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHH
Q 015293 193 DCIVVLVDACKAPERIDEILE-EGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 271 (409)
Q Consensus 193 DvillVvD~~~~~~~~~~~l~-~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~ 271 (409)
|++++|+|+..+......++. ..+.. .++|+++|+||+|+.+...+..+...+.... ...++++||++|.|+++|+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~-~~~ii~vSa~~~~gi~~L~ 77 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE--KGKKLILVLNKADLVPKEVLRKWLAYLRHSY-PTIPFKISATNGQGIEKKE 77 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc--CCCCEEEEEechhcCCHHHHHHHHHHHHhhC-CceEEEEeccCCcChhhHH
Confidence 789999999887655444454 33343 6799999999999987654444333333332 3578999999999999999
Q ss_pred HHHHhhC
Q 015293 272 DWILTKL 278 (409)
Q Consensus 272 ~~L~~~l 278 (409)
+.|.+..
T Consensus 78 ~~i~~~~ 84 (155)
T cd01849 78 SAFTKQT 84 (155)
T ss_pred HHHHHHh
Confidence 9987654
No 333
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.76 E-value=1.2e-08 Score=87.90 Aligned_cols=52 Identities=37% Similarity=0.608 Sum_probs=44.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGII 170 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~ 170 (409)
++|.||+|||||+|+|++.....++..+++|++.....+. ..+.+|||||+.
T Consensus 88 ~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~DtpG~~ 139 (141)
T cd01857 88 LVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLT---PTITLCDCPGLV 139 (141)
T ss_pred EECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeC---CCEEEEECCCcC
Confidence 9999999999999999999988889999999987654442 268999999974
No 334
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=9.1e-08 Score=92.33 Aligned_cols=125 Identities=21% Similarity=0.309 Sum_probs=82.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC------C-------------------------------
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP------E------------------------------- 158 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~------~------------------------------- 158 (409)
++|+-.+||||+|+.|+...+......|..|.+....++..+ |
T Consensus 63 l~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~csqmp 142 (532)
T KOG1954|consen 63 LVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCSQLP 142 (532)
T ss_pred EEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHhcCC
Confidence 999999999999999999887643333333333333322111 0
Q ss_pred ----eeEEEEeCCCCchhhhhhHhHH--HHHHHHHhhcCcceEEEEeeCCCCC-ChHHHHHHHHhccCCCCCCEEEEEec
Q 015293 159 ----YQMILYDTPGIIEKKIHMLDSM--MMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNK 231 (409)
Q Consensus 159 ----~~i~liDtpG~~~~~~~~l~~~--~~~~~~~~~~~aDvillVvD~~~~~-~~~~~~l~~~l~~~~~~~p~ilvlNK 231 (409)
..+.++||||+.......+.+. |.......+..||.|++++|+..-. ......++..++. ..-.+-||+||
T Consensus 143 ~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG--~EdkiRVVLNK 220 (532)
T KOG1954|consen 143 NQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG--HEDKIRVVLNK 220 (532)
T ss_pred hhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC--CcceeEEEecc
Confidence 1489999999976443323221 2333444467899999999987543 4444555556665 55678899999
Q ss_pred CCCCChhhHHH
Q 015293 232 KDLIKPGEIAK 242 (409)
Q Consensus 232 ~Dl~~~~~~~~ 242 (409)
.|.++..++-.
T Consensus 221 ADqVdtqqLmR 231 (532)
T KOG1954|consen 221 ADQVDTQQLMR 231 (532)
T ss_pred ccccCHHHHHH
Confidence 99998776543
No 335
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.73 E-value=1.5e-08 Score=88.81 Aligned_cols=51 Identities=39% Similarity=0.514 Sum_probs=45.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCC
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 169 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~ 169 (409)
++|.||+|||||+|+|++.....++..++||++.....+. ..+.++||||+
T Consensus 105 ~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 105 VIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred EEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCCC
Confidence 9999999999999999999877788999999998775543 56899999995
No 336
>PRK12289 GTPase RsgA; Reviewed
Probab=98.71 E-value=2.4e-08 Score=98.80 Aligned_cols=84 Identities=24% Similarity=0.397 Sum_probs=61.0
Q ss_pred hhcCcceEEEEeeCCCCC-Ch--HHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCC
Q 015293 188 AGINADCIVVLVDACKAP-ER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 264 (409)
Q Consensus 188 ~~~~aDvillVvD~~~~~-~~--~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g 264 (409)
++.++|.+++|+|+.++. .. .+.++... .. .++|+++|+||+|+.+......+...+... ++ +++++||++|
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a-~~--~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~-g~-~v~~iSA~tg 160 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKA-ES--TGLEIVLCLNKADLVSPTEQQQWQDRLQQW-GY-QPLFISVETG 160 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHH-HH--CCCCEEEEEEchhcCChHHHHHHHHHHHhc-CC-eEEEEEcCCC
Confidence 367999999999998654 22 23333322 22 679999999999998765544444444433 34 7899999999
Q ss_pred CCHHHHHHHHHh
Q 015293 265 HGVEDIRDWILT 276 (409)
Q Consensus 265 ~gi~~L~~~L~~ 276 (409)
.|+++|++.|..
T Consensus 161 ~GI~eL~~~L~~ 172 (352)
T PRK12289 161 IGLEALLEQLRN 172 (352)
T ss_pred CCHHHHhhhhcc
Confidence 999999998864
No 337
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.71 E-value=1.9e-08 Score=97.21 Aligned_cols=54 Identities=39% Similarity=0.588 Sum_probs=46.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 172 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~ 172 (409)
++|.||||||||+|+|++.+.+.+++.||+|++.+..... .++.++||||+...
T Consensus 126 ~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~---~~~~l~DtPGi~~~ 179 (287)
T PRK09563 126 IIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG---KGLELLDTPGILWP 179 (287)
T ss_pred EECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC---CcEEEEECCCcCCC
Confidence 9999999999999999999988899999999997653332 46899999998653
No 338
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=3.1e-08 Score=101.43 Aligned_cols=109 Identities=22% Similarity=0.340 Sum_probs=76.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeec-------CC---------CceEE--EEEEEE---eCCCeeEEEEeCCCCchhhh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTN-------KP---------QTTRH--RILGIC---SGPEYQMILYDTPGIIEKKI 174 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~-------~~---------~tt~~--~~~~~~---~~~~~~i~liDtpG~~~~~~ 174 (409)
++|+-.+|||+|+..|.+......+. ++ |.+.. +.+-.+ ....+-++++||||+..
T Consensus 133 l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVn--- 209 (971)
T KOG0468|consen 133 LVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVN--- 209 (971)
T ss_pred EeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCccc---
Confidence 99999999999999998754321100 00 11111 111111 22345689999999765
Q ss_pred hhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCC
Q 015293 175 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 235 (409)
Q Consensus 175 ~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~ 235 (409)
|+..+..+++.+|++++|+|+..+..-..+.++...-. .+.|+++|+||+|++
T Consensus 210 ------F~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq--~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 210 ------FSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ--NRLPIVVVINKVDRL 262 (971)
T ss_pred ------chHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh--ccCcEEEEEehhHHH
Confidence 45666677899999999999999986666666655444 689999999999974
No 339
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.70 E-value=2.7e-08 Score=95.61 Aligned_cols=54 Identities=43% Similarity=0.600 Sum_probs=46.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 172 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~ 172 (409)
++|.||||||||+|+|.+.+.+.+++.||+|+..+...+. ..+.++||||+...
T Consensus 123 ~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~---~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 123 IVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS---DGLELLDTPGILWP 176 (276)
T ss_pred EECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC---CCEEEEECCCcccC
Confidence 9999999999999999999988899999999987654432 36899999998643
No 340
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.69 E-value=1.7e-08 Score=91.38 Aligned_cols=51 Identities=41% Similarity=0.483 Sum_probs=42.7
Q ss_pred EEecCCCChHHHHHHHhCCcc--------eeeecCCCceEEEEEEEEeCCCeeEEEEeCCCC
Q 015293 116 VLGKPNVGKSTLANQMIGQKL--------SIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 169 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~--------~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~ 169 (409)
++|.||||||||+|+|++... ..++..||||++.....+.. .+.++||||+
T Consensus 132 ~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 132 VVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred EEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 999999999999999998542 35788999999988766542 5799999995
No 341
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.68 E-value=3.3e-08 Score=97.61 Aligned_cols=86 Identities=22% Similarity=0.212 Sum_probs=66.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC-----------------eeEEEEeCCCCchhhhhhHh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKKIHMLD 178 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~-----------------~~i~liDtpG~~~~~~~~l~ 178 (409)
|+|.||+|||||+|+|++.+...+.++|.||.++..+++...+ ..+.++|.||+.......
T Consensus 7 ivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g-- 84 (368)
T TIGR00092 7 IVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKG-- 84 (368)
T ss_pred EECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchhcc--
Confidence 8999999999999999999874578899999998888766544 368999999997643221
Q ss_pred HHHHHHHHHhhcCcceEEEEeeCCC
Q 015293 179 SMMMKNVRSAGINADCIVVLVDACK 203 (409)
Q Consensus 179 ~~~~~~~~~~~~~aDvillVvD~~~ 203 (409)
..+-......++.+|++++|+|+..
T Consensus 85 ~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 85 EGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cCcchHHHHHHHhCCEEEEEEeCCC
Confidence 1112334556789999999999863
No 342
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=7.2e-08 Score=93.07 Aligned_cols=132 Identities=17% Similarity=0.199 Sum_probs=84.9
Q ss_pred eEEEEeCCCCchhhhhhHhHHHHHHHHHhhc--CcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCCh
Q 015293 160 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGI--NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 237 (409)
Q Consensus 160 ~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~--~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~ 237 (409)
-+.|+|.+|.. .+. +.+...+. ..|.+++|+.+..+....+++.+.+... .+.|++++++|+|+..+
T Consensus 250 lvTfiDLAGh~--kY~-------~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~A--L~iPfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 250 LVTFIDLAGHA--KYQ-------KTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAA--LNIPFFVLVTKMDLVDR 318 (591)
T ss_pred eEEEeecccch--hhh-------eeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHH--hCCCeEEEEEeeccccc
Confidence 48899999953 221 11111121 4689999999999887666666666666 78999999999999876
Q ss_pred hhHHHHHHHHHh----------------------------cCCCceEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCcc
Q 015293 238 GEIAKKLEWYEK----------------------------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDI 289 (409)
Q Consensus 238 ~~~~~~~~~~~~----------------------------~~~~~~iv~iSA~~g~gi~~L~~~L~~~l~~~~~~~~~~~ 289 (409)
..+......+.. ..+..|+|.+|..+|+|++-|...|. .+++.......+.
T Consensus 319 ~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn-~Lsp~~~~~e~~~ 397 (591)
T KOG1143|consen 319 QGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLN-CLSPAGTAEERIQ 397 (591)
T ss_pred hhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHh-hcCCcCChHHHHH
Confidence 444333222211 23567999999999999987666554 4443333333333
Q ss_pred ccCchHHHHHHHHH
Q 015293 290 VSEHPERFFVGEII 303 (409)
Q Consensus 290 ~t~~~~r~~i~Eii 303 (409)
+...+-.|.+.||.
T Consensus 398 L~q~~~eFqvdEiy 411 (591)
T KOG1143|consen 398 LVQLPAEFQVDEIY 411 (591)
T ss_pred HhcCcceeeHhHee
Confidence 44455555566554
No 343
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.65 E-value=2.6e-08 Score=99.34 Aligned_cols=53 Identities=42% Similarity=0.504 Sum_probs=43.4
Q ss_pred EEecCCCChHHHHHHHhCCc-----ceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCch
Q 015293 116 VLGKPNVGKSTLANQMIGQK-----LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 171 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~-----~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~ 171 (409)
++|.+|||||||+|+|++.. ...++..|+||++.....+. ..+.++||||+..
T Consensus 159 ~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~---~~~~l~DtPG~~~ 216 (360)
T TIGR03597 159 VVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD---DGHSLYDTPGIIN 216 (360)
T ss_pred EECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC---CCCEEEECCCCCC
Confidence 99999999999999999853 35689999999987755432 3468999999864
No 344
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=6.2e-08 Score=91.25 Aligned_cols=116 Identities=21% Similarity=0.345 Sum_probs=77.5
Q ss_pred eEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCC-ChHHHHHHHHhccCCCCCCEEEEEecCCCCChh
Q 015293 160 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 238 (409)
Q Consensus 160 ~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~-~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~ 238 (409)
.+.|+|||| |. .++..+.....-.|.+++++.++.+. ++++.+.+....-+ .-+.++++-||+|+....
T Consensus 126 HVSfVDCPG--HD-------iLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM-~LkhiiilQNKiDli~e~ 195 (466)
T KOG0466|consen 126 HVSFVDCPG--HD-------ILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM-KLKHIIILQNKIDLIKES 195 (466)
T ss_pred EEEeccCCc--hH-------HHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh-hhceEEEEechhhhhhHH
Confidence 477999999 32 13444544455678899999887654 44444433322221 346789999999998765
Q ss_pred hHHHHHHHHHhc-----CCCceEEEcccCCCCCHHHHHHHHHhhCCCCCCCC
Q 015293 239 EIAKKLEWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYY 285 (409)
Q Consensus 239 ~~~~~~~~~~~~-----~~~~~iv~iSA~~g~gi~~L~~~L~~~l~~~~~~~ 285 (409)
...+..+.+.++ ..-.|++|+||.-+.|++-+.++|++.+|..+..|
T Consensus 196 ~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf 247 (466)
T KOG0466|consen 196 QALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDF 247 (466)
T ss_pred HHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcccc
Confidence 433333322221 12358999999999999999999999998665544
No 345
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.62 E-value=8.8e-08 Score=89.25 Aligned_cols=86 Identities=20% Similarity=0.139 Sum_probs=61.5
Q ss_pred EEecCCCChHHHHHHHhCC--cceeeecCCCceEEEEEEEEeC---CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 116 VLGKPNVGKSTLANQMIGQ--KLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~--~~~~v~~~~~tt~~~~~~~~~~---~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
|+|.+++|||+|+|.|+|. .+........+|+......... .+..++++||||+....... ...+....++.
T Consensus 12 v~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~---~~~~~~~~~l~ 88 (224)
T cd01851 12 VFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE---FEDDARLFALA 88 (224)
T ss_pred EECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc---hhhhhHHHHHH
Confidence 9999999999999999999 7776666778888766655554 36789999999986532221 11122223333
Q ss_pred --CcceEEEEeeCCCC
Q 015293 191 --NADCIVVLVDACKA 204 (409)
Q Consensus 191 --~aDvillVvD~~~~ 204 (409)
.+|++|+.++....
T Consensus 89 ~llss~~i~n~~~~~~ 104 (224)
T cd01851 89 TLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHhCEEEEeccCccc
Confidence 48999999987644
No 346
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.60 E-value=8.2e-08 Score=85.54 Aligned_cols=51 Identities=49% Similarity=0.630 Sum_probs=44.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCC
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 169 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~ 169 (409)
++|.+|+|||||+|+|++.....++..+++|++.....+. ..+.++||||+
T Consensus 120 ~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 120 VVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred EECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 9999999999999999999887788999999887765543 56899999996
No 347
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.54 E-value=2.3e-06 Score=78.46 Aligned_cols=128 Identities=17% Similarity=0.244 Sum_probs=80.2
Q ss_pred EEecCCCChHHHHHHHhCCccee-------eecCCCceEEEE-EEEEeCCCe--eEEEEeCCCCchhh-----hhhHhHH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-------VTNKPQTTRHRI-LGICSGPEY--QMILYDTPGIIEKK-----IHMLDSM 180 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-------v~~~~~tt~~~~-~~~~~~~~~--~i~liDtpG~~~~~-----~~~l~~~ 180 (409)
+||.+|.|||||+|.|...++.. ..+.|.||.-.. .-++..++. ++.++||||+.+.- ...+...
T Consensus 51 VVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWePI~ky 130 (336)
T KOG1547|consen 51 VVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPIEKY 130 (336)
T ss_pred EEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHHHHHH
Confidence 99999999999999998765432 124455554433 334455554 57899999997631 2233333
Q ss_pred HHHHHHHhhc--------------CcceEEEEeeCCCC-CChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHH
Q 015293 181 MMKNVRSAGI--------------NADCIVVLVDACKA-PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLE 245 (409)
Q Consensus 181 ~~~~~~~~~~--------------~aDvillVvD~~~~-~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~ 245 (409)
+.++..++++ ..++++|.+..+.. ..+.+.+++..+. .-..+|=|+-|.|-+.-++...+..
T Consensus 131 IneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt---~vvNvvPVIakaDtlTleEr~~Fkq 207 (336)
T KOG1547|consen 131 INEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLT---EVVNVVPVIAKADTLTLEERSAFKQ 207 (336)
T ss_pred HHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHh---hhheeeeeEeecccccHHHHHHHHH
Confidence 3333333221 46889999887643 3666666655443 3467888899999876555444443
Q ss_pred H
Q 015293 246 W 246 (409)
Q Consensus 246 ~ 246 (409)
.
T Consensus 208 r 208 (336)
T KOG1547|consen 208 R 208 (336)
T ss_pred H
Confidence 3
No 348
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=1.2e-06 Score=85.65 Aligned_cols=129 Identities=16% Similarity=0.207 Sum_probs=82.5
Q ss_pred EEecCCCChHHHHHHHhCCcceee------ecCCCce--EEEEEEEEeCCCe--eEEEEeCCCCchhh-----hhhHhHH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV------TNKPQTT--RHRILGICSGPEY--QMILYDTPGIIEKK-----IHMLDSM 180 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v------~~~~~tt--~~~~~~~~~~~~~--~i~liDtpG~~~~~-----~~~l~~~ 180 (409)
++|..|.|||||+|.|++..+..- +..+..| .......+..+|+ .++++||||+.+.- +..+-..
T Consensus 26 vvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~pi~~y 105 (366)
T KOG2655|consen 26 VVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNY 105 (366)
T ss_pred EecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchhhhHH
Confidence 999999999999999998754321 1122222 2233334444554 57889999987621 1222222
Q ss_pred HHHHHHHh-----------hc--CcceEEEEeeCCC-CCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHH
Q 015293 181 MMKNVRSA-----------GI--NADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW 246 (409)
Q Consensus 181 ~~~~~~~~-----------~~--~aDvillVvD~~~-~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~ 246 (409)
...+...+ +. ..+++||.+..+. +..+.+..++..+. ...++|=|+-|.|...+.++..+...
T Consensus 106 i~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~---~~vNiIPVI~KaD~lT~~El~~~K~~ 182 (366)
T KOG2655|consen 106 IDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLS---KKVNLIPVIAKADTLTKDELNQFKKR 182 (366)
T ss_pred HHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHh---ccccccceeeccccCCHHHHHHHHHH
Confidence 22222222 22 6799999998764 46787777766554 57889999999999988877665444
Q ss_pred H
Q 015293 247 Y 247 (409)
Q Consensus 247 ~ 247 (409)
+
T Consensus 183 I 183 (366)
T KOG2655|consen 183 I 183 (366)
T ss_pred H
Confidence 3
No 349
>PRK12289 GTPase RsgA; Reviewed
Probab=98.52 E-value=1e-07 Score=94.38 Aligned_cols=54 Identities=37% Similarity=0.379 Sum_probs=42.2
Q ss_pred EEEecCCCChHHHHHHHhCCcceeeecCCC-------ceEEEEEEEEeCCCeeEEEEeCCCCch
Q 015293 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-------TTRHRILGICSGPEYQMILYDTPGIIE 171 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~~~~~~v~~~~~-------tt~~~~~~~~~~~~~~i~liDtpG~~~ 171 (409)
+|+|.||||||||+|+|++.....+...++ ||++.....+..++ .|+||||+..
T Consensus 176 v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~ 236 (352)
T PRK12289 176 VVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ 236 (352)
T ss_pred EEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence 399999999999999999987776676666 88887554443222 7999999864
No 350
>PRK12288 GTPase RsgA; Reviewed
Probab=98.51 E-value=1.9e-07 Score=92.38 Aligned_cols=55 Identities=29% Similarity=0.340 Sum_probs=41.1
Q ss_pred EEEecCCCChHHHHHHHhCCcceeeecCCC-------ceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 015293 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-------TTRHRILGICSGPEYQMILYDTPGIIEK 172 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~~~~~~v~~~~~-------tt~~~~~~~~~~~~~~i~liDtpG~~~~ 172 (409)
+|+|.||||||||+|+|++.....+...++ ||+......+..++ .++||||+...
T Consensus 209 ~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~ 270 (347)
T PRK12288 209 IFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREF 270 (347)
T ss_pred EEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCcc
Confidence 399999999999999999987665555443 67666655554333 59999998653
No 351
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.51 E-value=2.7e-06 Score=82.79 Aligned_cols=129 Identities=16% Similarity=0.205 Sum_probs=81.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeee----cCC-----CceEEEEEEEEeCCCe--eEEEEeCCCCchhh-----hhhHhH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVT----NKP-----QTTRHRILGICSGPEY--QMILYDTPGIIEKK-----IHMLDS 179 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~----~~~-----~tt~~~~~~~~~~~~~--~i~liDtpG~~~~~-----~~~l~~ 179 (409)
++|..|.||||++|.|++....... ..+ ..........+..++. .++++||||+++.- ...+-.
T Consensus 28 ~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~ 107 (373)
T COG5019 28 VVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVD 107 (373)
T ss_pred EecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHHHHHH
Confidence 9999999999999999988432111 111 1112233334444554 57899999997621 122222
Q ss_pred HHHHHHHHhh--------------cCcceEEEEeeCC-CCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHH
Q 015293 180 MMMKNVRSAG--------------INADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 244 (409)
Q Consensus 180 ~~~~~~~~~~--------------~~aDvillVvD~~-~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~ 244 (409)
.+..+...++ ...+++||.+-.+ ++..+.+..++..+. ..+.+|=|+-|+|.....++..+.
T Consensus 108 yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls---~~vNlIPVI~KaD~lT~~El~~~K 184 (373)
T COG5019 108 YIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLS---KRVNLIPVIAKADTLTDDELAEFK 184 (373)
T ss_pred HHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHh---cccCeeeeeeccccCCHHHHHHHH
Confidence 2222222221 2469999999865 455777777665554 568899999999999988876655
Q ss_pred HHH
Q 015293 245 EWY 247 (409)
Q Consensus 245 ~~~ 247 (409)
..+
T Consensus 185 ~~I 187 (373)
T COG5019 185 ERI 187 (373)
T ss_pred HHH
Confidence 443
No 352
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.48 E-value=2.5e-08 Score=87.57 Aligned_cols=152 Identities=17% Similarity=0.245 Sum_probs=101.9
Q ss_pred EEecCCCChHHHHHHHhCCcceee-ecCCCceEEEEEEEEeCCC---eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPE---YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v-~~~~~tt~~~~~~~~~~~~---~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
++|.-++|||+++.+.+...+... ....| .++...++.+++ .++.|||..| ++.+.++ .+-+++.
T Consensus 30 Vig~~~vgkts~i~ryv~~nfs~~yRAtIg--vdfalkVl~wdd~t~vRlqLwdIag--Qerfg~m-------trVyyke 98 (229)
T KOG4423|consen 30 VIGDLGVGKTSSIKRYVHQNFSYHYRATIG--VDFALKVLQWDDKTIVRLQLWDIAG--QERFGNM-------TRVYYKE 98 (229)
T ss_pred eeeeccccchhHHHHHHHHHHHHHHHHHHh--HHHHHHHhccChHHHHHHHHhcchh--hhhhcce-------EEEEecC
Confidence 999999999999999876554310 01111 122233344443 3568999999 5544443 3445789
Q ss_pred cceEEEEeeCCCCC--ChHHHHHHHHhcc----CCCCCCEEEEEecCCCCChhhHH--HHHHHHHhcCCCceEEEcccCC
Q 015293 192 ADCIVVLVDACKAP--ERIDEILEEGVGD----HKDKLPILLVLNKKDLIKPGEIA--KKLEWYEKFTDVDEVIPVSAKY 263 (409)
Q Consensus 192 aDvillVvD~~~~~--~~~~~~l~~~l~~----~~~~~p~ilvlNK~Dl~~~~~~~--~~~~~~~~~~~~~~iv~iSA~~ 263 (409)
+.+..+|+|.++.. +....|..++... .+...|+++..||||..+..... .....+.+..+|...+.+||+.
T Consensus 99 a~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Ke 178 (229)
T KOG4423|consen 99 AHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKE 178 (229)
T ss_pred CcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccc
Confidence 99999999998876 3333444333222 12457889999999986532222 3345555666788899999999
Q ss_pred CCCHHHHHHHHHhhC
Q 015293 264 GHGVEDIRDWILTKL 278 (409)
Q Consensus 264 g~gi~~L~~~L~~~l 278 (409)
+.++++..+.|++.+
T Consensus 179 nkni~Ea~r~lVe~~ 193 (229)
T KOG4423|consen 179 NKNIPEAQRELVEKI 193 (229)
T ss_pred ccChhHHHHHHHHHH
Confidence 999999988888765
No 353
>PRK13796 GTPase YqeH; Provisional
Probab=98.48 E-value=1.5e-07 Score=94.04 Aligned_cols=53 Identities=43% Similarity=0.578 Sum_probs=42.3
Q ss_pred EEecCCCChHHHHHHHhCC-----cceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCch
Q 015293 116 VLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 171 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~-----~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~ 171 (409)
++|.||||||||+|+|++. +...++..||||++.+...+.. ...++||||+..
T Consensus 165 vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~---~~~l~DTPGi~~ 222 (365)
T PRK13796 165 VVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD---GSFLYDTPGIIH 222 (365)
T ss_pred EEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC---CcEEEECCCccc
Confidence 9999999999999999854 2344789999999977654432 248999999864
No 354
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.45 E-value=3.7e-07 Score=81.50 Aligned_cols=56 Identities=27% Similarity=0.325 Sum_probs=42.3
Q ss_pred ceEEEEeeCCCCCChHHHHHHHH--hccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhc
Q 015293 193 DCIVVLVDACKAPERIDEILEEG--VGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF 250 (409)
Q Consensus 193 DvillVvD~~~~~~~~~~~l~~~--l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~ 250 (409)
|++++|+|+..+.......+.+. +.. .++|+|+|+||+|+.++..+..+...+...
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~--~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~ 58 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAG--GNKKLVLVLNKIDLVPKENVEKWLKYLRRE 58 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhcc--CCCCEEEEEehhhcCCHHHHHHHHHHHHhh
Confidence 89999999998776555556555 333 568999999999999877766666666543
No 355
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.45 E-value=8.5e-07 Score=83.76 Aligned_cols=84 Identities=23% Similarity=0.357 Sum_probs=60.4
Q ss_pred hhcCcceEEEEeeCCCCCC---hHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCceEEEcccCC
Q 015293 188 AGINADCIVVLVDACKAPE---RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKY 263 (409)
Q Consensus 188 ~~~~aDvillVvD~~~~~~---~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~-~~~~~~~~~~~~~~iv~iSA~~ 263 (409)
++.++|.+++|+|+.++.. ..+.++. .+.. .+.|+++|+||+||....... .....+.. .+ .+++.+||++
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l~-~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~-~g-~~v~~~SAkt 107 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQLDRFLV-VAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRN-IG-YQVLMTSSKN 107 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHHHHHHHH-HHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHH-CC-CeEEEEecCC
Confidence 4789999999999987652 3333433 3333 679999999999997544433 33344443 23 3789999999
Q ss_pred CCCHHHHHHHHHh
Q 015293 264 GHGVEDIRDWILT 276 (409)
Q Consensus 264 g~gi~~L~~~L~~ 276 (409)
|.|+++|++.|..
T Consensus 108 g~gi~eLf~~l~~ 120 (245)
T TIGR00157 108 QDGLKELIEALQN 120 (245)
T ss_pred chhHHHHHhhhcC
Confidence 9999999998864
No 356
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.43 E-value=3.4e-07 Score=80.07 Aligned_cols=52 Identities=35% Similarity=0.551 Sum_probs=42.3
Q ss_pred EEEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCC
Q 015293 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 169 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~ 169 (409)
+++|.+|+|||||+|+|.+.....+++.+++|++...... + ..+.+|||||+
T Consensus 105 ~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~~~DtpGi 156 (156)
T cd01859 105 GVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI--T-SKIYLLDTPGV 156 (156)
T ss_pred EEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc--C-CCEEEEECcCC
Confidence 3999999999999999998887777888998877543322 2 36899999995
No 357
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.43 E-value=4.6e-06 Score=84.30 Aligned_cols=114 Identities=19% Similarity=0.245 Sum_probs=68.0
Q ss_pred EEecCCCChHHHHHHHh------CCcceeeecCCC-----------ceEE--EEEEEEe----------------CCCee
Q 015293 116 VLGKPNVGKSTLANQMI------GQKLSIVTNKPQ-----------TTRH--RILGICS----------------GPEYQ 160 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~------~~~~~~v~~~~~-----------tt~~--~~~~~~~----------------~~~~~ 160 (409)
++|.+|+||||++.+|. |.++..++..+. ..+. +...... ..++.
T Consensus 105 lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~~~D 184 (429)
T TIGR01425 105 FVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKENFD 184 (429)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999986 556665554332 1111 1111111 02568
Q ss_pred EEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 161 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 161 i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
++|+||||..+. ...+-..+... .. ...+|.++||+|++.+.... ........ .-.+.-+++||.|...
T Consensus 185 vViIDTaGr~~~-d~~lm~El~~i-~~-~~~p~e~lLVlda~~Gq~a~--~~a~~F~~--~~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 185 IIIVDTSGRHKQ-EDSLFEEMLQV-AE-AIQPDNIIFVMDGSIGQAAE--AQAKAFKD--SVDVGSVIITKLDGHA 253 (429)
T ss_pred EEEEECCCCCcc-hHHHHHHHHHH-hh-hcCCcEEEEEeccccChhHH--HHHHHHHh--ccCCcEEEEECccCCC
Confidence 999999996442 22232332222 22 34678999999998764432 22222222 2346788999999864
No 358
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.41 E-value=3e-07 Score=86.87 Aligned_cols=54 Identities=31% Similarity=0.289 Sum_probs=39.3
Q ss_pred EEEecCCCChHHHHHHHhCCcceee---ec----CCCceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 015293 115 SVLGKPNVGKSTLANQMIGQKLSIV---TN----KPQTTRHRILGICSGPEYQMILYDTPGIIEK 172 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~~~~~~v---~~----~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~ 172 (409)
+++|.||||||||+|+|++.....+ +. ..+||++.....+ .+ -.++||||+...
T Consensus 124 ~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~---~~liDtPG~~~~ 184 (245)
T TIGR00157 124 VFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HG---GLIADTPGFNEF 184 (245)
T ss_pred EEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CC---cEEEeCCCcccc
Confidence 3999999999999999998754433 32 2347877765554 22 279999998663
No 359
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=4.8e-07 Score=88.47 Aligned_cols=112 Identities=19% Similarity=0.189 Sum_probs=83.0
Q ss_pred EEecCCCChHHHHHHHhCCccee-----------------eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-----------------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLD 178 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-----------------v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~ 178 (409)
++.+..+||||...+++....++ .....|.|.......++|+|.++++|||||+++...
T Consensus 42 iiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l---- 117 (753)
T KOG0464|consen 42 IIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL---- 117 (753)
T ss_pred eEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE----
Confidence 89999999999999987432221 112234455555566889999999999999766321
Q ss_pred HHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChh
Q 015293 179 SMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 238 (409)
Q Consensus 179 ~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~ 238 (409)
.+...++--|.++.|+|++.+.+.++..++....+ .+.|.+..+||+|.....
T Consensus 118 -----everclrvldgavav~dasagve~qtltvwrqadk--~~ip~~~finkmdk~~an 170 (753)
T KOG0464|consen 118 -----EVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADK--FKIPAHCFINKMDKLAAN 170 (753)
T ss_pred -----EHHHHHHHhcCeEEEEeccCCcccceeeeehhccc--cCCchhhhhhhhhhhhhh
Confidence 12233556799999999999998888777766555 689999999999987543
No 360
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.38 E-value=2.7e-07 Score=88.11 Aligned_cols=57 Identities=33% Similarity=0.404 Sum_probs=40.4
Q ss_pred eEEEecCCCChHHHHHHHhCCccee---eecC----CCceEEEEEEEEeCCCeeEEEEeCCCCchhh
Q 015293 114 KSVLGKPNVGKSTLANQMIGQKLSI---VTNK----PQTTRHRILGICSGPEYQMILYDTPGIIEKK 173 (409)
Q Consensus 114 ~~ivG~~n~GKSsLln~l~~~~~~~---v~~~----~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~ 173 (409)
.+++|++|||||||+|+|.+..... +|.. -+||++.....+..+| .++||||+....
T Consensus 167 svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 167 TVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred EEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 3499999999999999999754322 3333 3577776665555455 689999986533
No 361
>PRK12288 GTPase RsgA; Reviewed
Probab=98.35 E-value=9.9e-07 Score=87.31 Aligned_cols=83 Identities=27% Similarity=0.370 Sum_probs=57.5
Q ss_pred hcCcceEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhh---HHHHHHHHHhcCCCceEEEcccCC
Q 015293 189 GINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFTDVDEVIPVSAKY 263 (409)
Q Consensus 189 ~~~aDvillVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~---~~~~~~~~~~~~~~~~iv~iSA~~ 263 (409)
..++|.+++|++...... ..+.++. .... .++|.++|+||+|+.+... .......+... + .+++++||++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~-~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~-g-~~v~~vSA~t 192 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLV-ACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNI-G-YRVLMVSSHT 192 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHH-HHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhC-C-CeEEEEeCCC
Confidence 468999999999764432 3334443 2333 5789999999999986442 22233333332 3 3899999999
Q ss_pred CCCHHHHHHHHHh
Q 015293 264 GHGVEDIRDWILT 276 (409)
Q Consensus 264 g~gi~~L~~~L~~ 276 (409)
+.|+++|+++|..
T Consensus 193 g~GideL~~~L~~ 205 (347)
T PRK12288 193 GEGLEELEAALTG 205 (347)
T ss_pred CcCHHHHHHHHhh
Confidence 9999999999865
No 362
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=4.7e-06 Score=86.40 Aligned_cols=95 Identities=24% Similarity=0.294 Sum_probs=55.6
Q ss_pred eEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCCh--
Q 015293 160 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP-- 237 (409)
Q Consensus 160 ~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~-- 237 (409)
.+.++|.||+.-.+ .....+-....++|++|||+.+.+........+...... .+..++|+.||+|....
T Consensus 207 DivliDsPGld~~s------e~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~--~KpniFIlnnkwDasase~ 278 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDS------ELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSE--EKPNIFILNNKWDASASEP 278 (749)
T ss_pred cceeccCCCCCCch------hhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhc--cCCcEEEEechhhhhcccH
Confidence 48899999974321 122334445678999999999877665444444433333 34556777788998643
Q ss_pred hhHHHHHHHHHhcC------CCceEEEcccC
Q 015293 238 GEIAKKLEWYEKFT------DVDEVIPVSAK 262 (409)
Q Consensus 238 ~~~~~~~~~~~~~~------~~~~iv~iSA~ 262 (409)
+..+.....+.... ...-++++||+
T Consensus 279 ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 279 ECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred HHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 22222233222211 12358899976
No 363
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.33 E-value=1.3e-05 Score=78.47 Aligned_cols=144 Identities=16% Similarity=0.260 Sum_probs=77.8
Q ss_pred EEecCCCChHHHHHHHhC------CcceeeecCCCc-----------eEEEEEEEE------------------eCCCee
Q 015293 116 VLGKPNVGKSTLANQMIG------QKLSIVTNKPQT-----------TRHRILGIC------------------SGPEYQ 160 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~------~~~~~v~~~~~t-----------t~~~~~~~~------------------~~~~~~ 160 (409)
++|.+|+||||++..|.+ .++..+...+.. .+.....+. ...++.
T Consensus 119 lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~~~~D 198 (318)
T PRK10416 119 VVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKARGID 198 (318)
T ss_pred EECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999853 233333222210 011011110 124467
Q ss_pred EEEEeCCCCchhhhhhHhHHHHHHHHHh-----hcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCC
Q 015293 161 MILYDTPGIIEKKIHMLDSMMMKNVRSA-----GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 235 (409)
Q Consensus 161 i~liDtpG~~~~~~~~l~~~~~~~~~~~-----~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~ 235 (409)
++++||||..+.....+ ..+ +.+... -..++-+++|+|++.+...... ...... .-.+.-+|+||.|..
T Consensus 199 ~ViIDTaGr~~~~~~l~-~eL-~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~-a~~f~~---~~~~~giIlTKlD~t 272 (318)
T PRK10416 199 VLIIDTAGRLHNKTNLM-EEL-KKIKRVIKKADPDAPHEVLLVLDATTGQNALSQ-AKAFHE---AVGLTGIILTKLDGT 272 (318)
T ss_pred EEEEeCCCCCcCCHHHH-HHH-HHHHHHHhhhcCCCCceEEEEEECCCChHHHHH-HHHHHh---hCCCCEEEEECCCCC
Confidence 99999999754322212 111 112211 1357889999999966543332 222111 123567899999975
Q ss_pred ChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHH
Q 015293 236 KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 271 (409)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~ 271 (409)
.... ..+...... + .|+.+++ +|+++++|.
T Consensus 273 ~~~G--~~l~~~~~~-~-~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 273 AKGG--VVFAIADEL-G-IPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCcc--HHHHHHHHH-C-CCEEEEe--CCCChhhCc
Confidence 4321 112222221 2 3788887 888887753
No 364
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.32 E-value=3.9e-06 Score=83.76 Aligned_cols=90 Identities=30% Similarity=0.312 Sum_probs=62.2
Q ss_pred HHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChh----hHHHHHHHHHhcCCC--ceEEE
Q 015293 185 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--DEVIP 258 (409)
Q Consensus 185 ~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~----~~~~~~~~~~~~~~~--~~iv~ 258 (409)
.......++++++|+|+.+........+.+.+ .++|+++|+||+|+.+.. .+..+...+....++ ..++.
T Consensus 57 l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~ 132 (360)
T TIGR03597 57 LNSLGDSNALIVYVVDIFDFEGSLIPELKRFV----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIIL 132 (360)
T ss_pred HhhcccCCcEEEEEEECcCCCCCccHHHHHHh----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEE
Confidence 44446788999999999877655555555443 368999999999997532 222222111222233 25899
Q ss_pred cccCCCCCHHHHHHHHHhhC
Q 015293 259 VSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 259 iSA~~g~gi~~L~~~L~~~l 278 (409)
+||++|.|+++|++.|.+..
T Consensus 133 vSAk~g~gv~eL~~~l~~~~ 152 (360)
T TIGR03597 133 VSAKKGNGIDELLDKIKKAR 152 (360)
T ss_pred ecCCCCCCHHHHHHHHHHHh
Confidence 99999999999999997753
No 365
>PRK00098 GTPase RsgA; Reviewed
Probab=98.30 E-value=2.6e-06 Score=82.80 Aligned_cols=82 Identities=26% Similarity=0.389 Sum_probs=57.1
Q ss_pred hcCcceEEEEeeCCCCCC--hH-HHHHHHHhccCCCCCCEEEEEecCCCCCh-hhHHHHHHHHHhcCCCceEEEcccCCC
Q 015293 189 GINADCIVVLVDACKAPE--RI-DEILEEGVGDHKDKLPILLVLNKKDLIKP-GEIAKKLEWYEKFTDVDEVIPVSAKYG 264 (409)
Q Consensus 189 ~~~aDvillVvD~~~~~~--~~-~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~-~~~~~~~~~~~~~~~~~~iv~iSA~~g 264 (409)
+.++|++++|+|+.++.. .. +.++. .+.. .++|+++|+||+|+... .........+... + .+++++||++|
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~-~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~-g-~~v~~vSA~~g 152 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLV-LAEA--NGIKPIIVLNKIDLLDDLEEARELLALYRAI-G-YDVLELSAKEG 152 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHH-HHHH--CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHC-C-CeEEEEeCCCC
Confidence 689999999999976542 22 23333 2333 67999999999999733 2222333334332 3 37899999999
Q ss_pred CCHHHHHHHHH
Q 015293 265 HGVEDIRDWIL 275 (409)
Q Consensus 265 ~gi~~L~~~L~ 275 (409)
.|+++|++.|.
T Consensus 153 ~gi~~L~~~l~ 163 (298)
T PRK00098 153 EGLDELKPLLA 163 (298)
T ss_pred ccHHHHHhhcc
Confidence 99999998874
No 366
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.29 E-value=1.8e-07 Score=90.97 Aligned_cols=55 Identities=29% Similarity=0.438 Sum_probs=47.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 173 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~ 173 (409)
+||+||+||||+||.|...+++.|.+.||.|..-++..+. ..|.||||||++..+
T Consensus 312 fiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLm---krIfLIDcPGvVyps 366 (572)
T KOG2423|consen 312 FIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLM---KRIFLIDCPGVVYPS 366 (572)
T ss_pred eecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHH---hceeEecCCCccCCC
Confidence 9999999999999999999999999999999875544333 578999999987643
No 367
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.28 E-value=3.8e-06 Score=73.93 Aligned_cols=71 Identities=21% Similarity=0.311 Sum_probs=44.8
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChH--HHHHHHHhccCCCCCCEEEEEecCCC
Q 015293 158 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI--DEILEEGVGDHKDKLPILLVLNKKDL 234 (409)
Q Consensus 158 ~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~--~~~l~~~l~~~~~~~p~ilvlNK~Dl 234 (409)
..+.+++||||+.+ +...+...+........-..|.+++++|+.+..... ...+...+.. --++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~-p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~-----ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLAD-PGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF-----ADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCC-HHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH-----CCEEEEecccC
Confidence 46789999999864 444444434444555667899999999987544221 1222233322 23679999996
No 368
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=1.6e-06 Score=84.85 Aligned_cols=148 Identities=19% Similarity=0.189 Sum_probs=91.7
Q ss_pred EEEecCCCChHHHHHHHhCCcce------------------------ee------ecCCCceEEEEEEEEeCCCeeEEEE
Q 015293 115 SVLGKPNVGKSTLANQMIGQKLS------------------------IV------TNKPQTTRHRILGICSGPEYQMILY 164 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~~~~~------------------------~v------~~~~~tt~~~~~~~~~~~~~~i~li 164 (409)
+++|+..+||||+-..|+..... -. ...-+.|.......+......+.++
T Consensus 83 vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~~ftiL 162 (501)
T KOG0459|consen 83 VFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENKRFTIL 162 (501)
T ss_pred EEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecceeEEee
Confidence 39999999999998887542111 01 1223445555566677777899999
Q ss_pred eCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCC-------ChHHHHHHHHhccCCCCCCEEEEEecCCCCCh
Q 015293 165 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 237 (409)
Q Consensus 165 DtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~-------~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~ 237 (409)
|+||+ .+ ++..+...+.+||+.++|+.+..+. ..++.....+.+.. .-...|+++||+|-...
T Consensus 163 DApGH--k~-------fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~-gv~~lVv~vNKMddPtv 232 (501)
T KOG0459|consen 163 DAPGH--KS-------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVKHLIVLINKMDDPTV 232 (501)
T ss_pred ccCcc--cc-------cchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh-ccceEEEEEEeccCCcc
Confidence 99994 33 2334445567999999999986543 11233333333321 44678999999998642
Q ss_pred hh----H----HHHHHHHHhc--C--CCceEEEcccCCCCCHHHHHH
Q 015293 238 GE----I----AKKLEWYEKF--T--DVDEVIPVSAKYGHGVEDIRD 272 (409)
Q Consensus 238 ~~----~----~~~~~~~~~~--~--~~~~iv~iSA~~g~gi~~L~~ 272 (409)
+- . .++..++... . .-..++++|..+|.++.+...
T Consensus 233 nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 233 NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 11 1 1112222211 1 123579999999999988665
No 369
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.25 E-value=3.8e-06 Score=81.43 Aligned_cols=111 Identities=14% Similarity=0.189 Sum_probs=71.8
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChh
Q 015293 159 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 238 (409)
Q Consensus 159 ~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~ 238 (409)
.-+.|||.+| ++.+-...-+++ .-...|..++++-++.+.-..+.+.+.+.-. ...|+++|++|+|.++..
T Consensus 219 KviTFIDLAG--HEkYLKTTvFGM-----TGH~PDf~MLMiGaNaGIiGmTKEHLgLALa--L~VPVfvVVTKIDMCPAN 289 (641)
T KOG0463|consen 219 KVITFIDLAG--HEKYLKTTVFGM-----TGHMPDFTMLMIGANAGIIGMTKEHLGLALA--LHVPVFVVVTKIDMCPAN 289 (641)
T ss_pred eeEEEEeccc--hhhhhheeeecc-----ccCCCCceEEEecccccceeccHHhhhhhhh--hcCcEEEEEEeeccCcHH
Confidence 4588999999 443211100010 0135799999999888774444444443333 679999999999999877
Q ss_pred hHHHHHHHHHhcC----------------------------CCceEEEcccCCCCCHHHHHHHHHhhCC
Q 015293 239 EIAKKLEWYEKFT----------------------------DVDEVIPVSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 239 ~~~~~~~~~~~~~----------------------------~~~~iv~iSA~~g~gi~~L~~~L~~~l~ 279 (409)
-+.+....+.+.. ..+|+|.+|-.+|+|++-|...| ++++
T Consensus 290 iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL-Nlls 357 (641)
T KOG0463|consen 290 ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL-NLLS 357 (641)
T ss_pred HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH-hhcC
Confidence 6655444333210 24689999999999998766555 4443
No 370
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.25 E-value=4.1e-06 Score=81.03 Aligned_cols=83 Identities=25% Similarity=0.343 Sum_probs=58.2
Q ss_pred hcCcceEEEEeeCCCCC---ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCC
Q 015293 189 GINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 265 (409)
Q Consensus 189 ~~~aDvillVvD~~~~~---~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~ 265 (409)
+.++|++++|+|+..+. ...+.++. .+.. .++|+++|+||+|+.+..........+.. .+ .+++++||++|.
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~-~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~-~g-~~v~~vSA~~g~ 150 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLV-AAEA--AGIEPVIVLTKADLLDDEEEELELVEALA-LG-YPVLAVSAKTGE 150 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHH-HHHH--cCCCEEEEEEHHHCCChHHHHHHHHHHHh-CC-CeEEEEECCCCc
Confidence 67999999999998775 22333333 2333 57899999999999765332222222222 23 378999999999
Q ss_pred CHHHHHHHHHh
Q 015293 266 GVEDIRDWILT 276 (409)
Q Consensus 266 gi~~L~~~L~~ 276 (409)
|+++|+..|..
T Consensus 151 gi~~L~~~L~~ 161 (287)
T cd01854 151 GLDELREYLKG 161 (287)
T ss_pred cHHHHHhhhcc
Confidence 99999988764
No 371
>PRK01889 GTPase RsgA; Reviewed
Probab=98.24 E-value=3.5e-06 Score=83.93 Aligned_cols=83 Identities=22% Similarity=0.241 Sum_probs=57.2
Q ss_pred hcCcceEEEEeeCCCCCCh-HHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCH
Q 015293 189 GINADCIVVLVDACKAPER-IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 189 ~~~aDvillVvD~~~~~~~-~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi 267 (409)
+.++|.+++|+++..+... ..+.++..+.. .+.|.+||+||+||.+... ....++.......+++++||++|.|+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~--~~i~piIVLNK~DL~~~~~--~~~~~~~~~~~g~~Vi~vSa~~g~gl 185 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE--SGAEPVIVLTKADLCEDAE--EKIAEVEALAPGVPVLAVSALDGEGL 185 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH--cCCCEEEEEEChhcCCCHH--HHHHHHHHhCCCCcEEEEECCCCccH
Confidence 5789999999999755443 33333333343 5778899999999986421 12222332223358999999999999
Q ss_pred HHHHHHHH
Q 015293 268 EDIRDWIL 275 (409)
Q Consensus 268 ~~L~~~L~ 275 (409)
++|..+|.
T Consensus 186 ~~L~~~L~ 193 (356)
T PRK01889 186 DVLAAWLS 193 (356)
T ss_pred HHHHHHhh
Confidence 99999985
No 372
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.23 E-value=2.9e-06 Score=77.40 Aligned_cols=122 Identities=16% Similarity=0.217 Sum_probs=82.3
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeC-CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~-~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
.++ ++|.+|+||||+=..+.....+.-...+|.|.|...+.+.. ++.-+.+||++| ++. .++..+..+-...++
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGg--qe~--fmen~~~~q~d~iF~ 80 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGG--QEE--FMENYLSSQEDNIFR 80 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCC--cHH--HHHHHHhhcchhhhe
Confidence 345 99999999999988887766665566788888877777654 346789999999 432 122333222334467
Q ss_pred CcceEEEEeeCCCCCChHH----HHHHHHhccCCCCCCEEEEEecCCCCChh
Q 015293 191 NADCIVVLVDACKAPERID----EILEEGVGDHKDKLPILLVLNKKDLIKPG 238 (409)
Q Consensus 191 ~aDvillVvD~~~~~~~~~----~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~ 238 (409)
..+++++|+|++...-+.+ +.-++.+....+...+.+.+.|+|+...+
T Consensus 81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 81 NVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred eheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccc
Confidence 8999999999987642211 11122222223667789999999998644
No 373
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=1.6e-06 Score=86.64 Aligned_cols=109 Identities=26% Similarity=0.301 Sum_probs=73.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEE--------------EE-----------------EeCCCeeEEEE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--------------GI-----------------CSGPEYQMILY 164 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~--------------~~-----------------~~~~~~~i~li 164 (409)
++.+...|||||...|+....-+.....|.||..-+ .+ -...++-++||
T Consensus 24 VIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLiNLI 103 (842)
T KOG0469|consen 24 VIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLINLI 103 (842)
T ss_pred EEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeEEec
Confidence 889999999999999986554333344443332110 00 11234668999
Q ss_pred eCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCC
Q 015293 165 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 235 (409)
Q Consensus 165 DtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~ 235 (409)
|.||+++. ...+-.+++-.|.+++|+|..++..-+++.++...-. ..+.-++++||+|+.
T Consensus 104 DSPGHVDF---------SSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~--ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 104 DSPGHVDF---------SSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA--ERIKPVLVMNKMDRA 163 (842)
T ss_pred cCCCcccc---------hhhhhheeEeccCcEEEEEccCceEechHHHHHHHHH--hhccceEEeehhhHH
Confidence 99998763 3456677899999999999999886555555443222 344447789999974
No 374
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.19 E-value=9.8e-07 Score=77.43 Aligned_cols=56 Identities=32% Similarity=0.418 Sum_probs=33.7
Q ss_pred eeEEEecCCCChHHHHHHHhCCccee---eecC----CCceEEEEEEEEeCCCeeEEEEeCCCCch
Q 015293 113 HKSVLGKPNVGKSTLANQMIGQKLSI---VTNK----PQTTRHRILGICSGPEYQMILYDTPGIIE 171 (409)
Q Consensus 113 ~~~ivG~~n~GKSsLln~l~~~~~~~---v~~~----~~tt~~~~~~~~~~~~~~i~liDtpG~~~ 171 (409)
..+++|++|||||||+|+|++..... ++.. -+||+......+. ....++||||+..
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~---~g~~iIDTPGf~~ 99 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLP---DGGYIIDTPGFRS 99 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEET---TSEEEECSHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecC---CCcEEEECCCCCc
Confidence 34499999999999999999874322 2322 3456555444442 2358999999755
No 375
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.19 E-value=4.1e-05 Score=73.45 Aligned_cols=144 Identities=18% Similarity=0.218 Sum_probs=77.1
Q ss_pred EEecCCCChHHHHHHHh------CCcceeeecCCCc-----------eEEEEEEEE------------------eCCCee
Q 015293 116 VLGKPNVGKSTLANQMI------GQKLSIVTNKPQT-----------TRHRILGIC------------------SGPEYQ 160 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~------~~~~~~v~~~~~t-----------t~~~~~~~~------------------~~~~~~ 160 (409)
++|.+|+||||++..|. |.++..+...+.. .+....... ...++.
T Consensus 77 l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D 156 (272)
T TIGR00064 77 FVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNID 156 (272)
T ss_pred EECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCC
Confidence 88999999999998875 3344433322210 000001000 124578
Q ss_pred EEEEeCCCCchhhhhhHhHHHHHHHHHhh-----cCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCC
Q 015293 161 MILYDTPGIIEKKIHMLDSMMMKNVRSAG-----INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 235 (409)
Q Consensus 161 i~liDtpG~~~~~~~~l~~~~~~~~~~~~-----~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~ 235 (409)
++|+||||..+.. ..+-..+ +...... ..+|.+++|+|++.+..... ......+. -.+.-+++||+|..
T Consensus 157 ~ViIDT~G~~~~d-~~~~~el-~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~-~~~~f~~~---~~~~g~IlTKlDe~ 230 (272)
T TIGR00064 157 VVLIDTAGRLQNK-VNLMDEL-KKIKRVIKKVDKDAPDEVLLVLDATTGQNALE-QAKVFNEA---VGLTGIILTKLDGT 230 (272)
T ss_pred EEEEeCCCCCcch-HHHHHHH-HHHHHHHhcccCCCCceEEEEEECCCCHHHHH-HHHHHHhh---CCCCEEEEEccCCC
Confidence 9999999965422 1111111 2222222 24899999999985533322 22222221 23567899999986
Q ss_pred ChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHH
Q 015293 236 KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 271 (409)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~ 271 (409)
..... .+...... + .|+.+++ +|+++++|.
T Consensus 231 ~~~G~--~l~~~~~~-~-~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 231 AKGGI--ILSIAYEL-K-LPIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCccH--HHHHHHHH-C-cCEEEEe--CCCChHhCc
Confidence 43221 11222111 2 3777776 788887753
No 376
>PRK13796 GTPase YqeH; Provisional
Probab=98.19 E-value=1.3e-05 Score=80.19 Aligned_cols=91 Identities=25% Similarity=0.250 Sum_probs=62.4
Q ss_pred HHHhhcCcc-eEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChh----hHHHHHHHHHhcCCC--ceEE
Q 015293 185 VRSAGINAD-CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--DEVI 257 (409)
Q Consensus 185 ~~~~~~~aD-villVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~----~~~~~~~~~~~~~~~--~~iv 257 (409)
....+..+| ++++|+|+.+........+.+.. .++|+++|+||+|+.+.. .+..+...+....+. ..++
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~ 137 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVV 137 (365)
T ss_pred HHHhhcccCcEEEEEEECccCCCchhHHHHHHh----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEE
Confidence 344556666 99999999887655555554433 468999999999997532 222222222222232 3689
Q ss_pred EcccCCCCCHHHHHHHHHhhCC
Q 015293 258 PVSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 258 ~iSA~~g~gi~~L~~~L~~~l~ 279 (409)
.+||++|.|+++|++.|.+..+
T Consensus 138 ~vSAk~g~gI~eL~~~I~~~~~ 159 (365)
T PRK13796 138 LISAQKGHGIDELLEAIEKYRE 159 (365)
T ss_pred EEECCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999987643
No 377
>PRK00098 GTPase RsgA; Reviewed
Probab=98.12 E-value=4.1e-06 Score=81.47 Aligned_cols=53 Identities=34% Similarity=0.347 Sum_probs=37.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCC-------CceEEEEEEEEeCCCeeEEEEeCCCCch
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKP-------QTTRHRILGICSGPEYQMILYDTPGIIE 171 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~-------~tt~~~~~~~~~~~~~~i~liDtpG~~~ 171 (409)
++|.+|||||||+|+|++.....+...+ +||+......+..+ ..++||||+..
T Consensus 169 ~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 169 LAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred EECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 9999999999999999987654333222 36665544433322 37899999864
No 378
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.04 E-value=2e-06 Score=84.09 Aligned_cols=55 Identities=35% Similarity=0.482 Sum_probs=47.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 173 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~ 173 (409)
|+|.|||||||+||+|...+.+.|.+.||.|+..+...+. ..|.|+|+||++-.+
T Consensus 257 ViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ld---k~i~llDsPgiv~~~ 311 (435)
T KOG2484|consen 257 IIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLD---KKIRLLDSPGIVPPS 311 (435)
T ss_pred eecCCCCChhHHHHHHHHhccccCCCCccchhhhhheecc---CCceeccCCceeecC
Confidence 9999999999999999999999999999999876554433 678999999987644
No 379
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.04 E-value=7.8e-06 Score=77.87 Aligned_cols=57 Identities=39% Similarity=0.495 Sum_probs=46.5
Q ss_pred EEecCCCChHHHHHHHhC-----CcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 015293 116 VLGKPNVGKSTLANQMIG-----QKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 172 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~-----~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~ 172 (409)
++|-||+|||||+|++.. .+.+.+.+.||.|+.....+--.....+.++||||+...
T Consensus 148 VvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P 209 (335)
T KOG2485|consen 148 VVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVP 209 (335)
T ss_pred EEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCC
Confidence 999999999999999853 356678999999998766554455577999999998764
No 380
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=3.8e-05 Score=77.97 Aligned_cols=102 Identities=23% Similarity=0.332 Sum_probs=71.6
Q ss_pred EEecCCCChHHHHHHHhCCccee-eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|+||+|||||+..|+...-.. .+...|. ..++......+.|+.||. + + ........-||+
T Consensus 74 vvGPpGtGKsTLirSlVrr~tk~ti~~i~GP-----iTvvsgK~RRiTflEcp~--D-----l-----~~miDvaKIaDL 136 (1077)
T COG5192 74 VVGPPGTGKSTLIRSLVRRFTKQTIDEIRGP-----ITVVSGKTRRITFLECPS--D-----L-----HQMIDVAKIADL 136 (1077)
T ss_pred eecCCCCChhHHHHHHHHHHHHhhhhccCCc-----eEEeecceeEEEEEeChH--H-----H-----HHHHhHHHhhhe
Confidence 99999999999999998643211 1111111 123445557899999996 2 1 122334567899
Q ss_pred EEEEeeCCCCCChHHHHHHHHhccCCCCCC-EEEEEecCCCCC
Q 015293 195 IVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIK 236 (409)
Q Consensus 195 illVvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilvlNK~Dl~~ 236 (409)
+|+++|+.-+.+-.+-++++.+.. .+.| ++-|++..|+..
T Consensus 137 VlLlIdgnfGfEMETmEFLnil~~--HGmPrvlgV~ThlDlfk 177 (1077)
T COG5192 137 VLLLIDGNFGFEMETMEFLNILIS--HGMPRVLGVVTHLDLFK 177 (1077)
T ss_pred eEEEeccccCceehHHHHHHHHhh--cCCCceEEEEeeccccc
Confidence 999999998887777778887766 5666 556899999975
No 381
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.02 E-value=1.2e-05 Score=77.80 Aligned_cols=53 Identities=38% Similarity=0.461 Sum_probs=37.3
Q ss_pred EEecCCCChHHHHHHHhCCcceee---e----cCCCceEEEEEEEEeCCCeeEEEEeCCCCch
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV---T----NKPQTTRHRILGICSGPEYQMILYDTPGIIE 171 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v---~----~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~ 171 (409)
++|++|||||||+|.|++.....+ + ...+||++.....+... ..++||||+..
T Consensus 166 ~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~ 225 (287)
T cd01854 166 LVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFRE 225 (287)
T ss_pred EECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCc
Confidence 999999999999999998764332 2 22346776654444322 27999999854
No 382
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.99 E-value=4.7e-05 Score=74.52 Aligned_cols=152 Identities=22% Similarity=0.356 Sum_probs=91.4
Q ss_pred EEEecCCCChHHHHHHHhC----CcceeeecCCCc-eEE--------------EEEEE--Ee---------------CCC
Q 015293 115 SVLGKPNVGKSTLANQMIG----QKLSIVTNKPQT-TRH--------------RILGI--CS---------------GPE 158 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~----~~~~~v~~~~~t-t~~--------------~~~~~--~~---------------~~~ 158 (409)
+|-|.=|+|||||+|.|+. .+++..-+..|. -.| ...+. ++ .+.
T Consensus 5 vitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~~ 84 (323)
T COG0523 5 VITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRDR 84 (323)
T ss_pred EEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccCC
Confidence 3789999999999999984 344432221111 111 11111 11 223
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHH---HHHHHHhccCCCCCCEEEEEecCCCC
Q 015293 159 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID---EILEEGVGDHKDKLPILLVLNKKDLI 235 (409)
Q Consensus 159 ~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~---~~l~~~l~~~~~~~p~ilvlNK~Dl~ 235 (409)
+..++|-|-|+.+ +...+...+........-.-|.++-|||+.+...... .....++. .-=+|++||+|+.
T Consensus 85 ~D~ivIEtTGlA~-P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia-----~AD~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLAD-PAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA-----FADVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCC-CHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH-----hCcEEEEecccCC
Confidence 5688999999865 3222222222122222335688999999987664332 23333332 2348899999999
Q ss_pred ChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHH
Q 015293 236 KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDW 273 (409)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~ 273 (409)
++..+......+....+..+++.+|. .+.+...++..
T Consensus 159 ~~~~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~~ 195 (323)
T COG0523 159 DAEELEALEARLRKLNPRARIIETSY-GDVDLAELLDE 195 (323)
T ss_pred CHHHHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhcc
Confidence 98877777778888777788898887 44555444443
No 383
>PRK14974 cell division protein FtsY; Provisional
Probab=97.97 E-value=9.5e-05 Score=72.84 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=55.8
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCCh
Q 015293 158 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 237 (409)
Q Consensus 158 ~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~ 237 (409)
+..++|+||||..+.....+ ..+ +.+.. ....|.+++|+|++.+.... ........ .-..--+++||+|....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm-~eL-~~i~~-~~~pd~~iLVl~a~~g~d~~-~~a~~f~~---~~~~~giIlTKlD~~~~ 294 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLM-DEL-KKIVR-VTKPDLVIFVGDALAGNDAV-EQAREFNE---AVGIDGVILTKVDADAK 294 (336)
T ss_pred CCCEEEEECCCccCCcHHHH-HHH-HHHHH-hhCCceEEEeeccccchhHH-HHHHHHHh---cCCCCEEEEeeecCCCC
Confidence 45699999999764322222 222 22222 23578999999997654222 11211111 12345788999998653
Q ss_pred hhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHH
Q 015293 238 GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 271 (409)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~ 271 (409)
-.. .+...... -.|+.+++ +|+++++|.
T Consensus 295 ~G~--~ls~~~~~--~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 295 GGA--ALSIAYVI--GKPILFLG--VGQGYDDLI 322 (336)
T ss_pred ccH--HHHHHHHH--CcCEEEEe--CCCChhhcc
Confidence 221 11111111 13777776 799998764
No 384
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.91 E-value=9.8e-05 Score=66.22 Aligned_cols=133 Identities=23% Similarity=0.366 Sum_probs=74.3
Q ss_pred EEecCCCChHHHHHHHh-----CCcceeeecCCCce----------EEEEEEE--------------------EeCC--C
Q 015293 116 VLGKPNVGKSTLANQMI-----GQKLSIVTNKPQTT----------RHRILGI--------------------CSGP--E 158 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~-----~~~~~~v~~~~~tt----------~~~~~~~--------------------~~~~--~ 158 (409)
+.|..|+|||||++.++ +.+.+.+.+..+.. ....... .... .
T Consensus 5 i~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~~~~ 84 (178)
T PF02492_consen 5 ITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREYEER 84 (178)
T ss_dssp EEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCCHGC
T ss_pred EEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhcCCC
Confidence 88999999999999999 34555444433310 0111111 1122 4
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 159 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 159 ~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
...+++-|.|+.+.. .+ .+........-..+.++.|+|+.+.. ......+...+.. --++++||+|+.+
T Consensus 85 ~d~IiIE~sG~a~p~--~l--~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~-----ADvIvlnK~D~~~ 155 (178)
T PF02492_consen 85 PDRIIIETSGLADPA--PL--ILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF-----ADVIVLNKIDLVS 155 (178)
T ss_dssp -SEEEEEEECSSGGG--GH--HHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-GGGHH
T ss_pred cCEEEECCccccccc--hh--hhccccccccccccceeEEeccccccccccchhhhhhcchh-----cCEEEEeccccCC
Confidence 678999999975422 22 11122222234678999999996532 1222333334332 2378899999987
Q ss_pred hh-hHHHHHHHHHhcCCCceEE
Q 015293 237 PG-EIAKKLEWYEKFTDVDEVI 257 (409)
Q Consensus 237 ~~-~~~~~~~~~~~~~~~~~iv 257 (409)
.. .+....+..+...+..+++
T Consensus 156 ~~~~i~~~~~~ir~lnp~a~Iv 177 (178)
T PF02492_consen 156 DEQKIERVREMIRELNPKAPIV 177 (178)
T ss_dssp HH--HHHHHHHHHHH-TTSEEE
T ss_pred hhhHHHHHHHHHHHHCCCCEEe
Confidence 76 3366666666655555554
No 385
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.86 E-value=3.2e-05 Score=75.95 Aligned_cols=89 Identities=30% Similarity=0.313 Sum_probs=67.1
Q ss_pred HHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEccc
Q 015293 182 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 261 (409)
Q Consensus 182 ~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA 261 (409)
.+.....+..+|+|+.|+|+..+.......+.... ..+|.++|+||+|+.+......+...+....+. ..+.+|+
T Consensus 25 ~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v----~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~-~~~~v~~ 99 (322)
T COG1161 25 KRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIV----KEKPKLLVLNKADLAPKEVTKKWKKYFKKEEGI-KPIFVSA 99 (322)
T ss_pred HHHHHHhcccCCEEEEEEeccccccccCccHHHHH----ccCCcEEEEehhhcCCHHHHHHHHHHHHhcCCC-ccEEEEe
Confidence 34566678999999999999998866555565555 346669999999999988777777777665433 4578889
Q ss_pred CCCCCHHHHHHHHH
Q 015293 262 KYGHGVEDIRDWIL 275 (409)
Q Consensus 262 ~~g~gi~~L~~~L~ 275 (409)
+++.+...+..++.
T Consensus 100 ~~~~~~~~i~~~~~ 113 (322)
T COG1161 100 KSRQGGKKIRKALE 113 (322)
T ss_pred ecccCccchHHHHH
Confidence 98888888775443
No 386
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=0.00012 Score=72.87 Aligned_cols=118 Identities=17% Similarity=0.256 Sum_probs=62.5
Q ss_pred EEecCCCChHHHHHHHhCC--------cceeeecCCC----------------ceEEEEEE-------EEeCCCeeEEEE
Q 015293 116 VLGKPNVGKSTLANQMIGQ--------KLSIVTNKPQ----------------TTRHRILG-------ICSGPEYQMILY 164 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~--------~~~~v~~~~~----------------tt~~~~~~-------~~~~~~~~i~li 164 (409)
|+|++||||||++.+|... ++..++.... ........ .....+..++||
T Consensus 142 lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~DlVLI 221 (374)
T PRK14722 142 LMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKHMVLI 221 (374)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCEEEE
Confidence 9999999999999998642 2222221111 00000000 011245689999
Q ss_pred eCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCC-CC----CCEEEEEecCCCCC
Q 015293 165 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK-DK----LPILLVLNKKDLIK 236 (409)
Q Consensus 165 DtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~-~~----~p~ilvlNK~Dl~~ 236 (409)
||||..+.. ..+...+ ... .....++-.++|++++.+.......+........ +. .+-=++++|.|-..
T Consensus 222 DTaG~~~~d-~~l~e~L-a~L-~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 222 DTIGMSQRD-RTVSDQI-AML-HGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred cCCCCCccc-HHHHHHH-HHH-hccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 999975421 1121111 111 1223455678999998876555544433322100 00 13357889999764
No 387
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.73 E-value=3e-05 Score=69.97 Aligned_cols=77 Identities=21% Similarity=0.286 Sum_probs=43.3
Q ss_pred eeEEEEeCCCCch-hhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhc----cCCCCCCEEEEEecCC
Q 015293 159 YQMILYDTPGIIE-KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVG----DHKDKLPILLVLNKKD 233 (409)
Q Consensus 159 ~~i~liDtpG~~~-~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~----~~~~~~p~ilvlNK~D 233 (409)
..+.++||||.+. ...-.+-+.+++.... ..---++++++|+. ........+.-.+. ...-..|.|=|++|+|
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~-~~F~~c~Vylldsq-f~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMD 175 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQ-WNFNVCVVYLLDSQ-FLVDSTKFISGCLSALSAMISLEVPHINVLSKMD 175 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhc-ccCceeEEEEeccc-hhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHH
Confidence 3589999999654 1222334445555554 23334677777753 22222222211111 1115789999999999
Q ss_pred CCCh
Q 015293 234 LIKP 237 (409)
Q Consensus 234 l~~~ 237 (409)
+++.
T Consensus 176 Llk~ 179 (273)
T KOG1534|consen 176 LLKD 179 (273)
T ss_pred Hhhh
Confidence 9865
No 388
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.72 E-value=0.0005 Score=61.04 Aligned_cols=73 Identities=15% Similarity=0.235 Sum_probs=40.8
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCCh
Q 015293 158 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 237 (409)
Q Consensus 158 ~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~ 237 (409)
+..++++||||........+.. + ..... ....|.+++|+|+...... ........+. .+ ..-+++||+|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~-l-~~l~~-~~~~~~~~lVv~~~~~~~~-~~~~~~~~~~--~~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEE-L-KKIKR-VVKPDEVLLVVDAMTGQDA-VNQAKAFNEA--LG-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHH-H-HHHHh-hcCCCeEEEEEECCCChHH-HHHHHHHHhh--CC-CCEEEEECCcCCCC
Confidence 4568999999964321111111 1 11111 2348999999998654332 2333333332 22 35688899998643
No 389
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.67 E-value=0.00051 Score=70.04 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=39.3
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCC-CEEEEEecCCCCC
Q 015293 159 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-PILLVLNKKDLIK 236 (409)
Q Consensus 159 ~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~-p~ilvlNK~Dl~~ 236 (409)
..++++||||..+.... +-..+ ... ..+..+|.+++|+|++.+.... ... +.+.... ..-+|+||+|...
T Consensus 176 ~DvVIIDTAGr~~~d~~-lm~El-~~l-~~~~~pdevlLVvda~~gq~av-~~a----~~F~~~l~i~gvIlTKlD~~a 246 (437)
T PRK00771 176 ADVIIVDTAGRHALEED-LIEEM-KEI-KEAVKPDEVLLVIDATIGQQAK-NQA----KAFHEAVGIGGIIITKLDGTA 246 (437)
T ss_pred CCEEEEECCCcccchHH-HHHHH-HHH-HHHhcccceeEEEeccccHHHH-HHH----HHHHhcCCCCEEEEecccCCC
Confidence 47899999996542222 21111 111 2234689999999998763211 111 2211223 3467899999754
No 390
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.65 E-value=0.00019 Score=62.50 Aligned_cols=58 Identities=21% Similarity=0.274 Sum_probs=34.5
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCC
Q 015293 158 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 233 (409)
Q Consensus 158 ~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~D 233 (409)
++.++|+||||..+. ....+..||.+++|+... .......+.. .. -..--++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~------------~~~~~~~Ad~~ivv~tpe--~~D~y~~~k~--~~--~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS------------EVDIASMADTTVVVMAPG--AGDDIQAIKA--GI--MEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh------------hhhHHHhCCEEEEEECCC--chhHHHHhhh--hH--hhhcCEEEEeCCC
Confidence 467999999996431 112367899999998765 2221111111 00 2233488999998
No 391
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.60 E-value=0.00036 Score=63.65 Aligned_cols=141 Identities=19% Similarity=0.178 Sum_probs=72.5
Q ss_pred EEecCCCChHHHHHHHh------CCcceeeecCCCc---e----------EEEEEEE----------------EeCCCee
Q 015293 116 VLGKPNVGKSTLANQMI------GQKLSIVTNKPQT---T----------RHRILGI----------------CSGPEYQ 160 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~------~~~~~~v~~~~~t---t----------~~~~~~~----------------~~~~~~~ 160 (409)
+||++||||||++-+|. +.++..++..... . .-..... ...++..
T Consensus 6 lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~~D 85 (196)
T PF00448_consen 6 LVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKKGYD 85 (196)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHTTSS
T ss_pred EECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhcCCC
Confidence 99999999999998875 3344433322110 0 0011100 0113457
Q ss_pred EEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhH
Q 015293 161 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 240 (409)
Q Consensus 161 i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~ 240 (409)
++|+||||..+.... +...+ +.....+ ..+-+++|++++....... .+...... -.+-=++++|.|....-.
T Consensus 86 ~vlIDT~Gr~~~d~~-~~~el-~~~~~~~-~~~~~~LVlsa~~~~~~~~-~~~~~~~~---~~~~~lIlTKlDet~~~G- 157 (196)
T PF00448_consen 86 LVLIDTAGRSPRDEE-LLEEL-KKLLEAL-NPDEVHLVLSATMGQEDLE-QALAFYEA---FGIDGLILTKLDETARLG- 157 (196)
T ss_dssp EEEEEE-SSSSTHHH-HHHHH-HHHHHHH-SSSEEEEEEEGGGGGHHHH-HHHHHHHH---SSTCEEEEESTTSSSTTH-
T ss_pred EEEEecCCcchhhHH-HHHHH-HHHhhhc-CCccceEEEecccChHHHH-HHHHHhhc---ccCceEEEEeecCCCCcc-
Confidence 999999996543222 22222 2333333 6788999999987654433 33332222 123456799999865322
Q ss_pred HHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 241 AKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 241 ~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
..+....... .|+-.+| +|++|++
T Consensus 158 -~~l~~~~~~~--~Pi~~it--~Gq~V~D 181 (196)
T PF00448_consen 158 -ALLSLAYESG--LPISYIT--TGQRVDD 181 (196)
T ss_dssp -HHHHHHHHHT--SEEEEEE--SSSSTTG
T ss_pred -cceeHHHHhC--CCeEEEE--CCCChhc
Confidence 1222222211 2555554 5666644
No 392
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.0006 Score=70.47 Aligned_cols=138 Identities=20% Similarity=0.260 Sum_probs=70.8
Q ss_pred EEecCCCChHHHHHHHhC--------CcceeeecCCCce----------E-E--EEEEEE----------eCCCeeEEEE
Q 015293 116 VLGKPNVGKSTLANQMIG--------QKLSIVTNKPQTT----------R-H--RILGIC----------SGPEYQMILY 164 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~--------~~~~~v~~~~~tt----------~-~--~~~~~~----------~~~~~~i~li 164 (409)
|+|.+|+||||++.+|.. .++..++..+... . . ...... ...+..++||
T Consensus 355 LVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~DLVLI 434 (559)
T PRK12727 355 LVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYKLVLI 434 (559)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccCCEEEe
Confidence 999999999999998863 2333333221110 0 0 000000 1235689999
Q ss_pred eCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHH
Q 015293 165 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 244 (409)
Q Consensus 165 DtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~ 244 (409)
||||..+... .+...+ ....... ....++|++++.........+.. +. ...+.-+|+||+|....- -..+
T Consensus 435 DTaG~s~~D~-~l~eeL-~~L~aa~--~~a~lLVLpAtss~~Dl~eii~~-f~---~~~~~gvILTKlDEt~~l--G~aL 504 (559)
T PRK12727 435 DTAGMGQRDR-ALAAQL-NWLRAAR--QVTSLLVLPANAHFSDLDEVVRR-FA---HAKPQGVVLTKLDETGRF--GSAL 504 (559)
T ss_pred cCCCcchhhH-HHHHHH-HHHHHhh--cCCcEEEEECCCChhHHHHHHHH-HH---hhCCeEEEEecCcCccch--hHHH
Confidence 9999754221 111111 1222222 23567778877554444333322 22 235778999999985422 2223
Q ss_pred HHHHhcCCCceEEEcccCCCCCH
Q 015293 245 EWYEKFTDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 245 ~~~~~~~~~~~iv~iSA~~g~gi 267 (409)
...... + .|+.+++ +|.+|
T Consensus 505 sv~~~~-~-LPI~yvt--~GQ~V 523 (559)
T PRK12727 505 SVVVDH-Q-MPITWVT--DGQRV 523 (559)
T ss_pred HHHHHh-C-CCEEEEe--CCCCc
Confidence 333222 1 2555554 56666
No 393
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.59 E-value=0.00042 Score=71.13 Aligned_cols=149 Identities=21% Similarity=0.207 Sum_probs=85.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEE--EEEEE-EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH--RILGI-CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~--~~~~~-~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++|..|+|||.++++++|..... ...+++.. .+..+ .......++|.|.+-. ..+.+... -..|
T Consensus 430 V~G~k~~GKs~lL~sflgr~~~~--~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~---~~~~l~~k--------e~~c 496 (625)
T KOG1707|consen 430 VVGPKNCGKSALLQSFLGRSMSD--NNTGTTKPRYAVNSVEVKGQQKYLILREIGED---DQDFLTSK--------EAAC 496 (625)
T ss_pred EEcCCcCchHHHHHHHhcccccc--ccccCCCCceeeeeeeeccccceEEEeecCcc---ccccccCc--------ccee
Confidence 99999999999999999987754 22222211 11111 1122234556665532 11111110 1579
Q ss_pred ceEEEEeeCCCCCChHH-HHHHHHhccCCCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 193 DCIVVLVDACKAPERID-EILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 193 DvillVvD~~~~~~~~~-~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~-~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
|++++++|.+++..... ..+.+.... ..+.|+++|..|+|+...... ......+....+..+.+.+|.++... .++
T Consensus 497 Dv~~~~YDsS~p~sf~~~a~v~~~~~~-~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~l 574 (625)
T KOG1707|consen 497 DVACLVYDSSNPRSFEYLAEVYNKYFD-LYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NEL 574 (625)
T ss_pred eeEEEecccCCchHHHHHHHHHHHhhh-ccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chH
Confidence 99999999986542221 122221111 267999999999999653211 00112233334555667788885222 889
Q ss_pred HHHHHhhCC
Q 015293 271 RDWILTKLP 279 (409)
Q Consensus 271 ~~~L~~~l~ 279 (409)
+..|..++.
T Consensus 575 f~kL~~~A~ 583 (625)
T KOG1707|consen 575 FIKLATMAQ 583 (625)
T ss_pred HHHHHHhhh
Confidence 999988775
No 394
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.58 E-value=0.00033 Score=68.70 Aligned_cols=137 Identities=21% Similarity=0.360 Sum_probs=73.1
Q ss_pred EEecCCCChHHHHHHHhCC----cceeeecCCCce-E---------EEEEEE------EeCC------------------
Q 015293 116 VLGKPNVGKSTLANQMIGQ----KLSIVTNKPQTT-R---------HRILGI------CSGP------------------ 157 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~----~~~~v~~~~~tt-~---------~~~~~~------~~~~------------------ 157 (409)
|.|.-|+|||||+|.|+.. +++.+.+..|.+ . ...... ++..
T Consensus 9 ltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~~~~~~~ 88 (318)
T PRK11537 9 LTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLDKGN 88 (318)
T ss_pred EEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHHHHhccC
Confidence 8999999999999999843 333332222211 0 011110 1100
Q ss_pred -CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHH--HHHHHHhccCCCCCCEEEEEecCCC
Q 015293 158 -EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID--EILEEGVGDHKDKLPILLVLNKKDL 234 (409)
Q Consensus 158 -~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~--~~l~~~l~~~~~~~p~ilvlNK~Dl 234 (409)
....+++.|.|+.+ +..-+...+........-..+.++.|+|+.+...... ......+. .-=+||+||+|+
T Consensus 89 ~~~d~IvIEttG~a~-p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~-----~AD~IvlnK~Dl 162 (318)
T PRK11537 89 IQFDRLVIECTGMAD-PGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG-----YADRILLTKTDV 162 (318)
T ss_pred CCCCEEEEECCCccC-HHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH-----hCCEEEEecccc
Confidence 24578899999854 2222222111111111123588999999976432111 11212222 123889999999
Q ss_pred CChhhHHHHHHHHHhcCCCceEEEcc
Q 015293 235 IKPGEIAKKLEWYEKFTDVDEVIPVS 260 (409)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~iv~iS 260 (409)
.+.. ......+....+..+++.++
T Consensus 163 ~~~~--~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 163 AGEA--EKLRERLARINARAPVYTVV 186 (318)
T ss_pred CCHH--HHHHHHHHHhCCCCEEEEec
Confidence 8743 44555666555666777654
No 395
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.57 E-value=0.0027 Score=61.07 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=39.7
Q ss_pred CCCCEEEEEecCCCCCh----h-----hHHHHHHHHHh---cCCCceEEEcccCCCCCHHHHHHHHHhhCC
Q 015293 221 DKLPILLVLNKKDLIKP----G-----EIAKKLEWYEK---FTDVDEVIPVSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 221 ~~~p~ilvlNK~Dl~~~----~-----~~~~~~~~~~~---~~~~~~iv~iSA~~g~gi~~L~~~L~~~l~ 279 (409)
.++|++||++|||.+.. . ...-+..++++ ..+ ...|.+|++...|++-|..+|+..+.
T Consensus 221 lGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~G-aaLiyTSvKE~KNidllyKYivhr~y 290 (473)
T KOG3905|consen 221 LGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYG-AALIYTSVKETKNIDLLYKYIVHRSY 290 (473)
T ss_pred CCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcC-ceeEEeecccccchHHHHHHHHHHhc
Confidence 46799999999998531 1 11112222222 122 36899999999999999999998663
No 396
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.57 E-value=8.7e-05 Score=61.38 Aligned_cols=110 Identities=21% Similarity=0.160 Sum_probs=61.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCC-ceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQ-TTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~-tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|..|+|||+|+.++....+. ..+. .|.. +..+| ....+.++.
T Consensus 5 ~~G~~gvGKt~l~~~~~~~~~~---~~~~~~t~~------------~~~~~--------------------~~~~~s~~~ 49 (124)
T smart00010 5 GIGDSGVGKVGKSARFVQFPFD---YVPTVFTIG------------IDVYD--------------------PTSYESFDV 49 (124)
T ss_pred EECCCChhHHHHHHHHhcCCcc---ccCceehhh------------hhhcc--------------------ccccCCCCE
Confidence 8999999999999999655442 1111 1110 11111 112457788
Q ss_pred EEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 195 IVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 195 illVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
+++|++..........+....+...+.+.|.+++.||.|+........ ... .+++.+||++|.|+.
T Consensus 50 ~~~v~~~~~~~s~~~~~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~---~~~-----~~~~~~s~~~~~~~~ 115 (124)
T smart00010 50 VLQCWRVDDRDSADNKNVPEVLVGNKSDLPILVGGNRDVLEEERQVAT---EEG-----LEFAETSAKTPEEGE 115 (124)
T ss_pred EEEEEEccCHHHHHHHhHHHHHhcCCCCCcEEEEeechhhHhhCcCCH---HHH-----HHHHHHhCCCcchhh
Confidence 888888765432211132222222225678999999999843221111 100 124568999999884
No 397
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.55 E-value=0.0022 Score=65.32 Aligned_cols=76 Identities=20% Similarity=0.302 Sum_probs=46.3
Q ss_pred eEEEEeCCCCchhhhh----hHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccC-CCCCCEEEEEecCCC
Q 015293 160 QMILYDTPGIIEKKIH----MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH-KDKLPILLVLNKKDL 234 (409)
Q Consensus 160 ~i~liDtpG~~~~~~~----~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl 234 (409)
.++++|.||++..-.. .....+.+....++.+.++||+|+--..- ......+..+...+ +.+...|+|++|+|+
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSV-DAERSnVTDLVsq~DP~GrRTIfVLTKVDl 491 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV-DAERSIVTDLVSQMDPHGRRTIFVLTKVDL 491 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCc-chhhhhHHHHHHhcCCCCCeeEEEEeecch
Confidence 5899999998762111 11223445567789999999999853221 11111122222211 267889999999998
Q ss_pred CC
Q 015293 235 IK 236 (409)
Q Consensus 235 ~~ 236 (409)
..
T Consensus 492 AE 493 (980)
T KOG0447|consen 492 AE 493 (980)
T ss_pred hh
Confidence 64
No 398
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.55 E-value=0.00042 Score=68.23 Aligned_cols=72 Identities=24% Similarity=0.228 Sum_probs=52.3
Q ss_pred HHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCC
Q 015293 181 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 252 (409)
Q Consensus 181 ~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~ 252 (409)
+.+..+..+..+|+||.|+|+.++....-....+.+.....++..|+|+||+|+++.+.+.+++.++...++
T Consensus 136 Y~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~p 207 (435)
T KOG2484|consen 136 YDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGP 207 (435)
T ss_pred HHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCC
Confidence 456667778899999999999998733222222222111145899999999999999989888888877554
No 399
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.53 E-value=0.00085 Score=57.55 Aligned_cols=100 Identities=20% Similarity=0.266 Sum_probs=58.4
Q ss_pred EEecCCCChHHHHHHHh------CCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhh
Q 015293 116 VLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 189 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~------~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~ 189 (409)
.-|.+|+||||+.-.+. |.....+...++.+. + .+.++++|||+.... .....+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~------~---~yd~VIiD~p~~~~~-----------~~~~~l 64 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLAN------L---DYDYIIIDTGAGISD-----------NVLDFF 64 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCC------C---CCCEEEEECCCCCCH-----------HHHHHH
Confidence 45789999999977664 222333332222111 0 167899999984321 122447
Q ss_pred cCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCC
Q 015293 190 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 235 (409)
Q Consensus 190 ~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~ 235 (409)
..||.+++|++.+...-.......+.+.......++.+|+|+++..
T Consensus 65 ~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 65 LAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred HhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 7899999999986443222222233332212456788999999743
No 400
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.47 E-value=0.0003 Score=80.42 Aligned_cols=117 Identities=25% Similarity=0.262 Sum_probs=67.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeee-------cCCCceEEEEEEEEeCCCeeEEEEeCCCCchh--h----hhhHhHHHH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVT-------NKPQTTRHRILGICSGPEYQMILYDTPGIIEK--K----IHMLDSMMM 182 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~-------~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~--~----~~~l~~~~~ 182 (409)
|+|.||+||||+|+.. |-.+.... ...+.|+++.-- + ..+-+++||+|-.-. . .......+.
T Consensus 116 viG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~ww-f---~~~avliDtaG~y~~~~~~~~~~~~~W~~fL 190 (1169)
T TIGR03348 116 VIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWW-F---TDEAVLIDTAGRYTTQDSDPEEDAAAWLGFL 190 (1169)
T ss_pred EECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceE-e---cCCEEEEcCCCccccCCCcccccHHHHHHHH
Confidence 9999999999999987 44443211 112223321111 1 145689999994321 1 112223333
Q ss_pred HHHHHh--hcCcceEEEEeeCCCCCCh-----------HHHHHHHHhccCCCCCCEEEEEecCCCCCh
Q 015293 183 KNVRSA--GINADCIVVLVDACKAPER-----------IDEILEEGVGDHKDKLPILLVLNKKDLIKP 237 (409)
Q Consensus 183 ~~~~~~--~~~aDvillVvD~~~~~~~-----------~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~ 237 (409)
...+.. -+-.|.||+++|+.+-... ....+.++...++...|+.||+||||++..
T Consensus 191 ~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 191 GLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 333322 2457999999998765421 111222333334468999999999999853
No 401
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.46 E-value=0.0023 Score=65.83 Aligned_cols=61 Identities=21% Similarity=0.240 Sum_probs=41.1
Q ss_pred CCCEEEEEecCCCCCh---------hhHHHHHHHHHh---cCCCceEEEcccCCCCCHHHHHHHHHhhCCCCCC
Q 015293 222 KLPILLVLNKKDLIKP---------GEIAKKLEWYEK---FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPA 283 (409)
Q Consensus 222 ~~p~ilvlNK~Dl~~~---------~~~~~~~~~~~~---~~~~~~iv~iSA~~g~gi~~L~~~L~~~l~~~~~ 283 (409)
+.|++||++|+|.... ..++-+...++. ..+ ..+|.+|++...+++-|+.+|...+...+.
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yG-AsL~yts~~~~~n~~~L~~yi~h~l~~~~f 268 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYG-ASLIYTSVKEEKNLDLLYKYILHRLYGFPF 268 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcC-CeEEEeeccccccHHHHHHHHHHHhccCCC
Confidence 4799999999997531 111112222222 223 368999999999999999999988765443
No 402
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.46 E-value=0.0022 Score=63.55 Aligned_cols=149 Identities=18% Similarity=0.249 Sum_probs=82.0
Q ss_pred EEecCCCChHHHHHHHhCC----cceeeecCCCce----------------EEEEEEE--------------------Ee
Q 015293 116 VLGKPNVGKSTLANQMIGQ----KLSIVTNKPQTT----------------RHRILGI--------------------CS 155 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~----~~~~v~~~~~tt----------------~~~~~~~--------------------~~ 155 (409)
|.|.-|+|||||+|.++.. +++.+.+..|.. .+..... +.
T Consensus 9 ltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~~l~~l~~ 88 (341)
T TIGR02475 9 VTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIPTMTKLLA 88 (341)
T ss_pred EEECCCCCHHHHHHHHHhccCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHHHHHHHHh
Confidence 8999999999999999743 344333322211 0011111 00
Q ss_pred -CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCCh------------------------HHH
Q 015293 156 -GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER------------------------IDE 210 (409)
Q Consensus 156 -~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~------------------------~~~ 210 (409)
...+..+++.|.|+.+ + ..+-..+........-..|.++.|||+...... ...
T Consensus 89 ~~~~~d~IvIEtsG~a~-P-~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (341)
T TIGR02475 89 RRQRPDHILIETSGLAL-P-KPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEE 166 (341)
T ss_pred ccCCCCEEEEeCCCCCC-H-HHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHH
Confidence 1235678999999854 2 223222211111111246889999999743210 011
Q ss_pred HHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCC-CceEEEcccCCCCCHHHHHH
Q 015293 211 ILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD-VDEVIPVSAKYGHGVEDIRD 272 (409)
Q Consensus 211 ~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~-~~~iv~iSA~~g~gi~~L~~ 272 (409)
.+...+. ..=+|++||+|+.+..++......+....+ ..+++.++ ........|+.
T Consensus 167 ~~~~Qi~-----~AD~IvlnK~Dl~~~~~l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~ 223 (341)
T TIGR02475 167 LFEDQLA-----CADLVILNKADLLDAAGLARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG 223 (341)
T ss_pred HHHHHHH-----hCCEEEEeccccCCHHHHHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence 2222222 234889999999998888777777766333 44666654 23345555544
No 403
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.43 E-value=0.00068 Score=67.49 Aligned_cols=72 Identities=18% Similarity=0.150 Sum_probs=38.2
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 158 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 158 ~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
.+.++|+||.|..+ .+.....-++...... ...-+.||++++.......+.+ ...+. -..-=++++|.|-..
T Consensus 281 ~~d~ILVDTaGrs~--~D~~~i~el~~~~~~~-~~i~~~Lvlsat~K~~dlkei~-~~f~~---~~i~~~I~TKlDET~ 352 (407)
T COG1419 281 DCDVILVDTAGRSQ--YDKEKIEELKELIDVS-HSIEVYLVLSATTKYEDLKEII-KQFSL---FPIDGLIFTKLDETT 352 (407)
T ss_pred cCCEEEEeCCCCCc--cCHHHHHHHHHHHhcc-ccceEEEEEecCcchHHHHHHH-HHhcc---CCcceeEEEcccccC
Confidence 35799999999533 2322222223333333 3455667777775544433333 22222 122356789999764
No 404
>PRK10867 signal recognition particle protein; Provisional
Probab=97.42 E-value=0.0019 Score=65.74 Aligned_cols=72 Identities=22% Similarity=0.285 Sum_probs=37.5
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 158 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 158 ~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
++.++|+||||..+.. ..+-..+ ..+... -..+-+++|+|++.+. ...... ..... .-...-+|+||.|...
T Consensus 183 ~~DvVIIDTaGrl~~d-~~lm~eL-~~i~~~-v~p~evllVlda~~gq-~av~~a-~~F~~--~~~i~giIlTKlD~~~ 254 (433)
T PRK10867 183 GYDVVIVDTAGRLHID-EELMDEL-KAIKAA-VNPDEILLVVDAMTGQ-DAVNTA-KAFNE--ALGLTGVILTKLDGDA 254 (433)
T ss_pred CCCEEEEeCCCCcccC-HHHHHHH-HHHHHh-hCCCeEEEEEecccHH-HHHHHH-HHHHh--hCCCCEEEEeCccCcc
Confidence 4579999999964421 1221211 122222 2567789999987542 111111 11111 1123457889999653
No 405
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.38 E-value=0.0013 Score=65.36 Aligned_cols=114 Identities=13% Similarity=0.092 Sum_probs=59.9
Q ss_pred EEecCCCChHHHHHHHhC------CcceeeecCCCce-------------EEEEEEEEe-------------CCCeeEEE
Q 015293 116 VLGKPNVGKSTLANQMIG------QKLSIVTNKPQTT-------------RHRILGICS-------------GPEYQMIL 163 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~------~~~~~v~~~~~tt-------------~~~~~~~~~-------------~~~~~i~l 163 (409)
++|++|+||||++..|.. .++..++..+... ..+.....+ ..+..++|
T Consensus 211 lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VL 290 (407)
T PRK12726 211 LIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHIL 290 (407)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEE
Confidence 999999999999999852 2333333322211 001111100 13468999
Q ss_pred EeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 164 YDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 164 iDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
+||||..+.....+.. + ...... ...|.+++|+++........ +..+.+..-.+--+++||.|...
T Consensus 291 IDTAGr~~~d~~~l~E-L-~~l~~~-~~p~~~~LVLsag~~~~d~~----~i~~~f~~l~i~glI~TKLDET~ 356 (407)
T PRK12726 291 IDTVGRNYLAEESVSE-I-SAYTDV-VHPDLTCFTFSSGMKSADVM----TILPKLAEIPIDGFIITKMDETT 356 (407)
T ss_pred EECCCCCccCHHHHHH-H-HHHhhc-cCCceEEEECCCcccHHHHH----HHHHhcCcCCCCEEEEEcccCCC
Confidence 9999964422222211 1 112222 24578888887743322222 22222212234567899999864
No 406
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.34 E-value=0.00088 Score=68.97 Aligned_cols=142 Identities=18% Similarity=0.227 Sum_probs=69.8
Q ss_pred EEecCCCChHHHHHHHhCC--------cceeeecCCC-c----------eEE--EEEE----------EEeCCCeeEEEE
Q 015293 116 VLGKPNVGKSTLANQMIGQ--------KLSIVTNKPQ-T----------TRH--RILG----------ICSGPEYQMILY 164 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~--------~~~~v~~~~~-t----------t~~--~~~~----------~~~~~~~~i~li 164 (409)
|+|.+||||||++..|.+. ++..+...+. . ... .... .....+..+++|
T Consensus 261 LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~VLI 340 (484)
T PRK06995 261 LMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKHIVLI 340 (484)
T ss_pred EECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCCeEEe
Confidence 9999999999999998742 2332222221 0 000 0000 011234568999
Q ss_pred eCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHH
Q 015293 165 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 244 (409)
Q Consensus 165 DtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~ 244 (409)
||+|..+... .+... ...... .....-.++|+|++.......+ ..+.+......-+++||+|-..... ..+
T Consensus 341 DTaGr~~~d~-~~~e~-~~~l~~-~~~p~e~~LVLdAt~~~~~l~~----i~~~f~~~~~~g~IlTKlDet~~~G--~~l 411 (484)
T PRK06995 341 DTIGMSQRDR-MVSEQ-IAMLHG-AGAPVKRLLLLNATSHGDTLNE----VVQAYRGPGLAGCILTKLDEAASLG--GAL 411 (484)
T ss_pred CCCCcChhhH-HHHHH-HHHHhc-cCCCCeeEEEEeCCCcHHHHHH----HHHHhccCCCCEEEEeCCCCcccch--HHH
Confidence 9999654221 11111 111111 1112337899999765433322 2222212334567789999764221 122
Q ss_pred HHHHhcCCCceEEEcccCCCCCH-HHH
Q 015293 245 EWYEKFTDVDEVIPVSAKYGHGV-EDI 270 (409)
Q Consensus 245 ~~~~~~~~~~~iv~iSA~~g~gi-~~L 270 (409)
...... + .|+.+++ +|++| ++|
T Consensus 412 ~i~~~~-~-lPI~yvt--~GQ~VPeDL 434 (484)
T PRK06995 412 DVVIRY-K-LPLHYVS--NGQRVPEDL 434 (484)
T ss_pred HHHHHH-C-CCeEEEe--cCCCChhhh
Confidence 222221 1 2555553 67787 554
No 407
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.34 E-value=0.00058 Score=69.13 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=40.3
Q ss_pred CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 157 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 157 ~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
.+..++++||+|..+.. ..+...+ ... ......+-.++|+|++.........+. ... .-.+-=++++|.|-..
T Consensus 268 ~~~d~VLIDTaGrsqrd-~~~~~~l-~~l-~~~~~~~~~~LVl~at~~~~~~~~~~~-~f~---~~~~~~~I~TKlDEt~ 340 (420)
T PRK14721 268 RGKHMVLIDTVGMSQRD-QMLAEQI-AML-SQCGTQVKHLLLLNATSSGDTLDEVIS-AYQ---GHGIHGCIITKVDEAA 340 (420)
T ss_pred cCCCEEEecCCCCCcch-HHHHHHH-HHH-hccCCCceEEEEEcCCCCHHHHHHHHH-Hhc---CCCCCEEEEEeeeCCC
Confidence 34578999999975422 1222221 112 112334568899999865444433322 222 2234467899999864
No 408
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.32 E-value=0.0012 Score=66.67 Aligned_cols=115 Identities=16% Similarity=0.181 Sum_probs=62.0
Q ss_pred EEecCCCChHHHHHHHhCC-------cceeeecCCCce-----------E--EEEEEE---------EeCCCeeEEEEeC
Q 015293 116 VLGKPNVGKSTLANQMIGQ-------KLSIVTNKPQTT-----------R--HRILGI---------CSGPEYQMILYDT 166 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~-------~~~~v~~~~~tt-----------~--~~~~~~---------~~~~~~~i~liDt 166 (409)
++|.+||||||++..|... ++..++..+..+ . ...... +...+..++|+||
T Consensus 228 lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~VLIDT 307 (432)
T PRK12724 228 FVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELILIDT 307 (432)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEEEEeC
Confidence 9999999999999998632 232222211100 0 000000 1113568899999
Q ss_pred CCCchhhhhhHhHHHHHHHHHhhc--CcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 167 PGIIEKKIHMLDSMMMKNVRSAGI--NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 167 pG~~~~~~~~l~~~~~~~~~~~~~--~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
||..+.....+.. + ........ ...-.+||+|++.+.......... .. .-.+-=++++|.|-..
T Consensus 308 aGr~~rd~~~l~e-L-~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~-f~---~~~~~glIlTKLDEt~ 373 (432)
T PRK12724 308 AGYSHRNLEQLER-M-QSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKA-YE---SLNYRRILLTKLDEAD 373 (432)
T ss_pred CCCCccCHHHHHH-H-HHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHH-hc---CCCCCEEEEEcccCCC
Confidence 9975432222221 1 22222221 244688999998765444333222 22 2234567899999864
No 409
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.0018 Score=65.10 Aligned_cols=143 Identities=20% Similarity=0.205 Sum_probs=73.0
Q ss_pred EEecCCCChHHHHHHHhC----------CcceeeecCCCc--------e-----EEEEEEE----------EeCCCeeEE
Q 015293 116 VLGKPNVGKSTLANQMIG----------QKLSIVTNKPQT--------T-----RHRILGI----------CSGPEYQMI 162 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~----------~~~~~v~~~~~t--------t-----~~~~~~~----------~~~~~~~i~ 162 (409)
++|++|+||||++..|.. .++..++..+.. + ..+.... -...+..++
T Consensus 179 lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~~~DlV 258 (388)
T PRK12723 179 LVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDFDLV 258 (388)
T ss_pred EECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhCCCCEE
Confidence 999999999999988752 233333222210 0 0011111 012456899
Q ss_pred EEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHH
Q 015293 163 LYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 242 (409)
Q Consensus 163 liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~ 242 (409)
++||||..+.....+. . +..........+-+++|+|++.+.......+... . .-.+-=++++|.|-...-..
T Consensus 259 LIDTaGr~~~~~~~l~-e-l~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~-~---~~~~~~~I~TKlDet~~~G~-- 330 (388)
T PRK12723 259 LVDTIGKSPKDFMKLA-E-MKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF-S---PFSYKTVIFTKLDETTCVGN-- 330 (388)
T ss_pred EEcCCCCCccCHHHHH-H-HHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh-c---CCCCCEEEEEeccCCCcchH--
Confidence 9999996542111111 1 1222222222235889999987755444333222 1 12345678999998643221
Q ss_pred HHHHHHhcCCCceEEEcccCCCCCH-HHH
Q 015293 243 KLEWYEKFTDVDEVIPVSAKYGHGV-EDI 270 (409)
Q Consensus 243 ~~~~~~~~~~~~~iv~iSA~~g~gi-~~L 270 (409)
.+...... + .|+.+++ +|++| ++|
T Consensus 331 ~l~~~~~~-~-~Pi~yit--~Gq~vPeDl 355 (388)
T PRK12723 331 LISLIYEM-R-KEVSYVT--DGQIVPHNI 355 (388)
T ss_pred HHHHHHHH-C-CCEEEEe--CCCCChhhh
Confidence 12222111 1 2555553 57787 454
No 410
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.29 E-value=0.00047 Score=68.85 Aligned_cols=114 Identities=18% Similarity=0.255 Sum_probs=61.3
Q ss_pred EEecCCCChHHHHHHHhC------CcceeeecCCCc--------e---E--EEEEEEE------------e-CCCeeEEE
Q 015293 116 VLGKPNVGKSTLANQMIG------QKLSIVTNKPQT--------T---R--HRILGIC------------S-GPEYQMIL 163 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~------~~~~~v~~~~~t--------t---~--~~~~~~~------------~-~~~~~i~l 163 (409)
|+|++|+||||++..|.. .++..++..+.. + . -...... . ..+..++|
T Consensus 246 LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVL 325 (436)
T PRK11889 246 LIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYIL 325 (436)
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEE
Confidence 999999999999999863 233333322211 0 0 0000000 0 11357999
Q ss_pred EeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 164 YDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 164 iDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
+||||..+.....+.. +.+ ... ....|.++||+|++........ +..... .-..-=++++|.|-..
T Consensus 326 IDTaGRs~kd~~lm~E-L~~-~lk-~~~PdevlLVLsATtk~~d~~~-i~~~F~---~~~idglI~TKLDET~ 391 (436)
T PRK11889 326 IDTAGKNYRASETVEE-MIE-TMG-QVEPDYICLTLSASMKSKDMIE-IITNFK---DIHIDGIVFTKFDETA 391 (436)
T ss_pred EeCccccCcCHHHHHH-HHH-HHh-hcCCCeEEEEECCccChHHHHH-HHHHhc---CCCCCEEEEEcccCCC
Confidence 9999964432222222 211 111 1346788999998755433332 222222 2233467899999865
No 411
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.28 E-value=0.0002 Score=65.77 Aligned_cols=121 Identities=26% Similarity=0.360 Sum_probs=64.4
Q ss_pred EEEecCCCChHHHHHHH------hCCcceeeecCCCceEEEEEEE-----------------------------------
Q 015293 115 SVLGKPNVGKSTLANQM------IGQKLSIVTNKPQTTRHRILGI----------------------------------- 153 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l------~~~~~~~v~~~~~tt~~~~~~~----------------------------------- 153 (409)
+++|+||+||||..+.+ +|..+..|.-.|........-.
T Consensus 6 vVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~~i 85 (290)
T KOG1533|consen 6 VVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEANI 85 (290)
T ss_pred EEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHhhh
Confidence 39999999999999876 3666666655554332221100
Q ss_pred ------EeCCCeeEEEEeCCCCch--hhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCCh---HHHHHHHHhccCCCC
Q 015293 154 ------CSGPEYQMILYDTPGIIE--KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER---IDEILEEGVGDHKDK 222 (409)
Q Consensus 154 ------~~~~~~~i~liDtpG~~~--~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~---~~~~l~~~l~~~~~~ 222 (409)
+........++|+||.+. ...+.+...+ +...+ ..-.=+++-++|+.-...+ ....+..+.....-.
T Consensus 86 dwl~~~l~~~~~~Y~lFDcPGQVELft~h~~l~~I~-~~Lek-~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~me 163 (290)
T KOG1533|consen 86 DWLLEKLKPLTDHYVLFDCPGQVELFTHHDSLNKIF-RKLEK-LDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHME 163 (290)
T ss_pred HHHHHHhhhccCcEEEEeCCCcEEEEeccchHHHHH-HHHHH-cCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhc
Confidence 000113589999999654 1223333332 22222 3333455556665322221 111111111111257
Q ss_pred CCEEEEEecCCCCCh
Q 015293 223 LPILLVLNKKDLIKP 237 (409)
Q Consensus 223 ~p~ilvlNK~Dl~~~ 237 (409)
.|.|=|+.|+|+...
T Consensus 164 lphVNvlSK~Dl~~~ 178 (290)
T KOG1533|consen 164 LPHVNVLSKADLLKK 178 (290)
T ss_pred ccchhhhhHhHHHHh
Confidence 899999999998643
No 412
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.25 E-value=0.00042 Score=65.83 Aligned_cols=126 Identities=24% Similarity=0.385 Sum_probs=67.8
Q ss_pred EEecCCCChHHHHHHHhC----CcceeeecCCCceEEE-------E-EE--------------EEe--------------
Q 015293 116 VLGKPNVGKSTLANQMIG----QKLSIVTNKPQTTRHR-------I-LG--------------ICS-------------- 155 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~----~~~~~v~~~~~tt~~~-------~-~~--------------~~~-------------- 155 (409)
|.|+-|+|||||+|.++. ++++...+..|-..+. + -+ .++
T Consensus 62 ITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~gvraie~lvq 141 (391)
T KOG2743|consen 62 ITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNGVRAIENLVQ 141 (391)
T ss_pred EEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchHHHHHHHHHh
Confidence 999999999999999973 3344333333321110 0 00 011
Q ss_pred -CCCeeEEEEeCCCCchhhhhhHhHHH-HHHHHHhhcCcceEEEEeeCCCCCCh---------HHHHHHHHhccCCCCCC
Q 015293 156 -GPEYQMILYDTPGIIEKKIHMLDSMM-MKNVRSAGINADCIVVLVDACKAPER---------IDEILEEGVGDHKDKLP 224 (409)
Q Consensus 156 -~~~~~i~liDtpG~~~~~~~~l~~~~-~~~~~~~~~~aDvillVvD~~~~~~~---------~~~~l~~~l~~~~~~~p 224 (409)
-+.+...++.|-|+.... .+-+.| .......--.-|.++-|+|+.+.... ..+...+.. ..
T Consensus 142 kkGkfD~IllETTGlAnPa--Pia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA------~A 213 (391)
T KOG2743|consen 142 KKGKFDHILLETTGLANPA--PIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIA------LA 213 (391)
T ss_pred cCCCcceEEEeccCCCCcH--HHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHh------hh
Confidence 112356889999986532 232222 22222222246999999999753211 111111111 11
Q ss_pred EEEEEecCCCCChhhHHHHHHHHHh
Q 015293 225 ILLVLNKKDLIKPGEIAKKLEWYEK 249 (409)
Q Consensus 225 ~ilvlNK~Dl~~~~~~~~~~~~~~~ 249 (409)
--+++||.|+....++....+.+..
T Consensus 214 D~II~NKtDli~~e~~~~l~q~I~~ 238 (391)
T KOG2743|consen 214 DRIIMNKTDLVSEEEVKKLRQRIRS 238 (391)
T ss_pred heeeeccccccCHHHHHHHHHHHHH
Confidence 2467899999988776655544443
No 413
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.23 E-value=0.00071 Score=62.41 Aligned_cols=45 Identities=29% Similarity=0.248 Sum_probs=33.2
Q ss_pred hcCcceEEEEeeCCCCCChHHHHHHHHhccCCCC-CCEEEEEecCCCC
Q 015293 189 GINADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLI 235 (409)
Q Consensus 189 ~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~-~p~ilvlNK~Dl~ 235 (409)
.+.+|++|.|+|.+...-...+.+.++... -+ +++.+|+||+|-.
T Consensus 153 ~~~vD~vivVvDpS~~sl~taeri~~L~~e--lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 153 IEGVDLVIVVVDPSYKSLRTAERIKELAEE--LGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCCCEEEEEeCCcHHHHHHHHHHHHHHHH--hCCceEEEEEeeccch
Confidence 578999999999986543344455555554 44 8999999999964
No 414
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.21 E-value=0.00094 Score=67.75 Aligned_cols=81 Identities=22% Similarity=0.193 Sum_probs=59.4
Q ss_pred HHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcc
Q 015293 181 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 260 (409)
Q Consensus 181 ~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iS 260 (409)
+-++.+..+..+|+||.+||+.++.--....+..+.......+..+|++||+||+++.....+.+++... ..++++.|
T Consensus 164 ~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~--ni~~vf~S 241 (562)
T KOG1424|consen 164 IWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQN--NIPVVFFS 241 (562)
T ss_pred HHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhc--CceEEEEe
Confidence 4466778899999999999999987332233333344333557789999999999988877777776653 35888889
Q ss_pred cCC
Q 015293 261 AKY 263 (409)
Q Consensus 261 A~~ 263 (409)
|..
T Consensus 242 A~~ 244 (562)
T KOG1424|consen 242 ALA 244 (562)
T ss_pred ccc
Confidence 876
No 415
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.21 E-value=0.0011 Score=62.29 Aligned_cols=125 Identities=15% Similarity=0.218 Sum_probs=73.2
Q ss_pred EEecCCCChHHHHHHHhCCcceee---ecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchh-----hhhhHhH----HH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV---TNKPQTTRHRILGICSGPE--YQMILYDTPGIIEK-----KIHMLDS----MM 181 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v---~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~-----~~~~l~~----~~ 181 (409)
-||.+|.|||||++.|++.++... ...|+......+..+...+ .++.++||.|+.+. ++..+-. .|
T Consensus 47 CvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQF 126 (406)
T KOG3859|consen 47 CVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQF 126 (406)
T ss_pred EeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHHHHHHH
Confidence 789999999999999999886421 1112111111111122222 46889999998762 2222211 11
Q ss_pred ---------HHHHHHhhc--CcceEEEEeeCCC-CCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHH
Q 015293 182 ---------MKNVRSAGI--NADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 243 (409)
Q Consensus 182 ---------~~~~~~~~~--~aDvillVvD~~~-~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~ 243 (409)
+++....+. ..+++++.|..+. +....+...+..+. .+..+|-|+-|.|-....++..+
T Consensus 127 EaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld---skVNIIPvIAKaDtisK~eL~~F 197 (406)
T KOG3859|consen 127 EAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD---SKVNIIPVIAKADTISKEELKRF 197 (406)
T ss_pred HHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh---hhhhhHHHHHHhhhhhHHHHHHH
Confidence 122222232 4578888887763 34555544444443 56788888999998877766544
No 416
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.20 E-value=0.00066 Score=69.21 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=59.7
Q ss_pred EEecCCCChHHHHHHHhC--------CcceeeecCCCce-------------EEEEEEE----------EeCCCeeEEEE
Q 015293 116 VLGKPNVGKSTLANQMIG--------QKLSIVTNKPQTT-------------RHRILGI----------CSGPEYQMILY 164 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~--------~~~~~v~~~~~tt-------------~~~~~~~----------~~~~~~~i~li 164 (409)
|+|++||||||++..|.. .++..++..+... ....... -...+..++||
T Consensus 226 ~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~DlVlI 305 (424)
T PRK05703 226 LVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCDVILI 305 (424)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCCEEEE
Confidence 999999999998887642 2333333333100 0000000 01234679999
Q ss_pred eCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 165 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 165 DtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
||||..+.....+. .+ ..+.......+-+.+|++++.........+ ..... . .+--+++||+|...
T Consensus 306 Dt~G~~~~d~~~~~-~L-~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~-~~f~~--~-~~~~vI~TKlDet~ 371 (424)
T PRK05703 306 DTAGRSQRDKRLIE-EL-KALIEFSGEPIDVYLVLSATTKYEDLKDIY-KHFSR--L-PLDGLIFTKLDETS 371 (424)
T ss_pred eCCCCCCCCHHHHH-HH-HHHHhccCCCCeEEEEEECCCCHHHHHHHH-HHhCC--C-CCCEEEEecccccc
Confidence 99997542222111 11 122221223456788898876544433322 22222 1 23368899999854
No 417
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.20 E-value=0.0017 Score=63.82 Aligned_cols=75 Identities=17% Similarity=0.214 Sum_probs=49.5
Q ss_pred EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCC------------hHHHHHHHHhcc-C
Q 015293 153 ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE------------RIDEILEEGVGD-H 219 (409)
Q Consensus 153 ~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~------------~~~~~l~~~l~~-~ 219 (409)
.+..++..+.+||++|. ...+ +.+..++.++++++||+|.++... +....+..++.. .
T Consensus 155 ~f~~~~~~~~~~DvgGq--~~~R-------~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 155 KFTIKNLKFRMFDVGGQ--RSER-------KKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred EEEecceEEEEECCCCC--cccc-------hhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 45567889999999994 2222 335566889999999999986421 111122222222 1
Q ss_pred CCCCCEEEEEecCCCCC
Q 015293 220 KDKLPILLVLNKKDLIK 236 (409)
Q Consensus 220 ~~~~p~ilvlNK~Dl~~ 236 (409)
..++|++|++||.|+..
T Consensus 226 ~~~~pill~~NK~D~f~ 242 (317)
T cd00066 226 FANTSIILFLNKKDLFE 242 (317)
T ss_pred ccCCCEEEEccChHHHH
Confidence 15799999999999754
No 418
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.19 E-value=0.0057 Score=62.34 Aligned_cols=72 Identities=19% Similarity=0.161 Sum_probs=38.6
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 158 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 158 ~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
++.++++||||..+.. ..+-..+ ..+.. .-.+|-+++|+|++.+. ............ - ...=+|+||+|...
T Consensus 182 ~~DvVIIDTaGr~~~d-~~l~~eL-~~i~~-~~~p~e~lLVvda~tgq-~~~~~a~~f~~~--v-~i~giIlTKlD~~~ 253 (428)
T TIGR00959 182 GFDVVIVDTAGRLQID-EELMEEL-AAIKE-ILNPDEILLVVDAMTGQ-DAVNTAKTFNER--L-GLTGVVLTKLDGDA 253 (428)
T ss_pred CCCEEEEeCCCccccC-HHHHHHH-HHHHH-hhCCceEEEEEeccchH-HHHHHHHHHHhh--C-CCCEEEEeCccCcc
Confidence 4579999999964421 1222222 22222 23578899999987542 221111111111 1 23467799999643
No 419
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.0013 Score=70.93 Aligned_cols=145 Identities=16% Similarity=0.179 Sum_probs=71.1
Q ss_pred EEecCCCChHHHHHHHhCCc--------ceeeecCCC---ce--------EE--EEEEE----------EeCCCeeEEEE
Q 015293 116 VLGKPNVGKSTLANQMIGQK--------LSIVTNKPQ---TT--------RH--RILGI----------CSGPEYQMILY 164 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~--------~~~v~~~~~---tt--------~~--~~~~~----------~~~~~~~i~li 164 (409)
|+|++||||||++.+|.+.. +..++.... .. .. ..... -...+..++||
T Consensus 190 lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~VLI 269 (767)
T PRK14723 190 LVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHLVLI 269 (767)
T ss_pred EECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999987532 222211110 00 00 00000 01234579999
Q ss_pred eCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHH
Q 015293 165 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 244 (409)
Q Consensus 165 DtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~ 244 (409)
||||..+.. ..+...+ ..+.. ....+-+++|+|++.......+.+ ...+....-.+-=+|++|.|-...-. ..+
T Consensus 270 DTAGRs~~d-~~l~eel-~~l~~-~~~p~e~~LVLsAt~~~~~l~~i~-~~f~~~~~~~i~glIlTKLDEt~~~G--~iL 343 (767)
T PRK14723 270 DTVGMSQRD-RNVSEQI-AMLCG-VGRPVRRLLLLNAASHGDTLNEVV-HAYRHGAGEDVDGCIITKLDEATHLG--PAL 343 (767)
T ss_pred eCCCCCccC-HHHHHHH-HHHhc-cCCCCeEEEEECCCCcHHHHHHHH-HHHhhcccCCCCEEEEeccCCCCCcc--HHH
Confidence 999965422 2222221 11111 235677899999986433322222 22221000124467899999864321 112
Q ss_pred HHHHhcCCCceEEEcccCCCCCH-HHH
Q 015293 245 EWYEKFTDVDEVIPVSAKYGHGV-EDI 270 (409)
Q Consensus 245 ~~~~~~~~~~~iv~iSA~~g~gi-~~L 270 (409)
...... + .|+.+++ +|++| ++|
T Consensus 344 ~i~~~~-~-lPI~yit--~GQ~VPdDL 366 (767)
T PRK14723 344 DTVIRH-R-LPVHYVS--TGQKVPEHL 366 (767)
T ss_pred HHHHHH-C-CCeEEEe--cCCCChhhc
Confidence 222111 1 2555554 57777 443
No 420
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.14 E-value=0.0024 Score=52.10 Aligned_cols=91 Identities=23% Similarity=0.199 Sum_probs=53.9
Q ss_pred ecCCCChHHHHHHHh-------CCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 118 GKPNVGKSTLANQMI-------GQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 118 G~~n~GKSsLln~l~-------~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
+..|+||||+.-.|. |.....+...++.. ..++++|||+.... .....+.
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~------------~D~IIiDtpp~~~~-----------~~~~~l~ 63 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFG------------DDYVVVDLGRSLDE-----------VSLAALD 63 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCC------------CCEEEEeCCCCcCH-----------HHHHHHH
Confidence 568999999776663 33333343333322 16899999985431 1223467
Q ss_pred CcceEEEEeeCCCCCChHHHHHHHHhccCC-C-CCCEEEEEec
Q 015293 191 NADCIVVLVDACKAPERIDEILEEGVGDHK-D-KLPILLVLNK 231 (409)
Q Consensus 191 ~aDvillVvD~~~~~~~~~~~l~~~l~~~~-~-~~p~ilvlNK 231 (409)
.||.++++++.+.........+.+.++... . ...+.+|+|+
T Consensus 64 ~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 64 QADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 889999999876544333333334333321 2 3567788886
No 421
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.14 E-value=0.0012 Score=47.22 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=25.3
Q ss_pred hcCcceEEEEeeCCCCCCh---HHHHHHHHhccCCCCCCEEEEEecCC
Q 015293 189 GINADCIVVLVDACKAPER---IDEILEEGVGDHKDKLPILLVLNKKD 233 (409)
Q Consensus 189 ~~~aDvillVvD~~~~~~~---~~~~l~~~l~~~~~~~p~ilvlNK~D 233 (409)
...+++++|++|.+..... ....+...++....++|+++|+||+|
T Consensus 11 ~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 11 AHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 4568999999999976622 11223333343336899999999998
No 422
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.13 E-value=0.022 Score=49.77 Aligned_cols=89 Identities=20% Similarity=0.216 Sum_probs=52.5
Q ss_pred hhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHH----HHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhc
Q 015293 175 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERID----EILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF 250 (409)
Q Consensus 175 ~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~----~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~ 250 (409)
+.++..+......++..||+++ +|--.+.+-.. ..+.+.+. ..+|+|.++-+-+.-+ ....+...
T Consensus 84 ~~le~i~~~al~rA~~~aDvII--IDEIGpMElks~~f~~~ve~vl~---~~kpliatlHrrsr~P------~v~~ik~~ 152 (179)
T COG1618 84 EGLEEIAIPALRRALEEADVII--IDEIGPMELKSKKFREAVEEVLK---SGKPLIATLHRRSRHP------LVQRIKKL 152 (179)
T ss_pred HHHHHHhHHHHHHHhhcCCEEE--EecccchhhccHHHHHHHHHHhc---CCCcEEEEEecccCCh------HHHHhhhc
Confidence 3456667777888888899875 56443332222 22333333 6789998888776522 22333332
Q ss_pred CCCceEEEcccCCCCCHHHHHHHHHhhCC
Q 015293 251 TDVDEVIPVSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 251 ~~~~~iv~iSA~~g~gi~~L~~~L~~~l~ 279 (409)
.. -+++ .|.+|-+.++..|...+.
T Consensus 153 ~~--v~v~---lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 153 GG--VYVF---LTPENRNRILNEILSVLK 176 (179)
T ss_pred CC--EEEE---EccchhhHHHHHHHHHhc
Confidence 22 1232 677777888888877664
No 423
>PRK13695 putative NTPase; Provisional
Probab=97.07 E-value=0.016 Score=51.49 Aligned_cols=87 Identities=16% Similarity=0.219 Sum_probs=47.7
Q ss_pred HhHHHHHHHHHhhcCcceEEEEeeC---CCCCChHH-HHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCC
Q 015293 177 LDSMMMKNVRSAGINADCIVVLVDA---CKAPERID-EILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 252 (409)
Q Consensus 177 l~~~~~~~~~~~~~~aDvillVvD~---~~~~~~~~-~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~ 252 (409)
++..........+..+|+ +++|- ........ ..+...+ . .+.|++++.||.... .....+....+
T Consensus 82 le~~~~~l~~~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~-~--~~~~~i~v~h~~~~~------~~~~~i~~~~~ 150 (174)
T PRK13695 82 LERIGIPALERALEEADV--IIIDEIGKMELKSPKFVKAVEEVL-D--SEKPVIATLHRRSVH------PFVQEIKSRPG 150 (174)
T ss_pred HHHHHHHHHHhccCCCCE--EEEECCCcchhhhHHHHHHHHHHH-h--CCCeEEEEECchhhH------HHHHHHhccCC
Confidence 444455555566778888 57783 22222222 2233333 3 678999999985321 11222332222
Q ss_pred CceEEEcccCCCCCHHHHHHHHHhhC
Q 015293 253 VDEVIPVSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 253 ~~~iv~iSA~~g~gi~~L~~~L~~~l 278 (409)
..++.+ +.+|-+++...+.+.+
T Consensus 151 -~~i~~~---~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 151 -GRVYEL---TPENRDSLPFEILNRL 172 (174)
T ss_pred -cEEEEE---cchhhhhHHHHHHHHH
Confidence 245555 6677788888887654
No 424
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.04 E-value=0.0033 Score=55.64 Aligned_cols=109 Identities=20% Similarity=0.177 Sum_probs=60.7
Q ss_pred EEecCCCChHHHHHHHh------CCcceeeecCCC-ceEEEEEE--------EEeCCCeeEEEEeCCCCchhhhhhHhHH
Q 015293 116 VLGKPNVGKSTLANQMI------GQKLSIVTNKPQ-TTRHRILG--------ICSGPEYQMILYDTPGIIEKKIHMLDSM 180 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~------~~~~~~v~~~~~-tt~~~~~~--------~~~~~~~~i~liDtpG~~~~~~~~l~~~ 180 (409)
.-+.+|+||||+.-.|. |.++..+...++ ...+.... ....-...++++|||+-...
T Consensus 5 ~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiD~p~~~~~-------- 76 (179)
T cd02036 5 TSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVLAGDYILIDSPAGIER-------- 76 (179)
T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCCcchhhcccCCEEEEECCCCCcH--------
Confidence 34679999999987764 445444433332 11111100 00000016899999984321
Q ss_pred HHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 181 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 181 ~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
.....+..||.++++++...........+.+.+... ......+|+|++|...
T Consensus 77 ---~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~-~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 77 ---GFITAIAPADEALLVTTPEISSLRDADRVKGLLEAL-GIKVVGVIVNRVRPDM 128 (179)
T ss_pred ---HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHc-CCceEEEEEeCCcccc
Confidence 122346789999999988754433333344444331 2345678999998653
No 425
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.97 E-value=0.0054 Score=60.44 Aligned_cols=96 Identities=19% Similarity=0.106 Sum_probs=65.7
Q ss_pred HHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccC
Q 015293 183 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 262 (409)
Q Consensus 183 ~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~ 262 (409)
......+..+|++|-|+|+.++....-..+...++.-.+.+.+|+|+|||||++..--..+...+.+..+.. -|--|-.
T Consensus 205 ~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTi-AfHAsi~ 283 (572)
T KOG2423|consen 205 GELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTI-AFHASIN 283 (572)
T ss_pred HHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcce-eeehhhc
Confidence 445567889999999999999875544555555665446788999999999998655444444444433221 2444555
Q ss_pred CCCCHHHHHHHHHhhCC
Q 015293 263 YGHGVEDIRDWILTKLP 279 (409)
Q Consensus 263 ~g~gi~~L~~~L~~~l~ 279 (409)
+..|-..|++.|.+...
T Consensus 284 nsfGKgalI~llRQf~k 300 (572)
T KOG2423|consen 284 NSFGKGALIQLLRQFAK 300 (572)
T ss_pred CccchhHHHHHHHHHHh
Confidence 66788888888876553
No 426
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.94 E-value=0.0063 Score=58.22 Aligned_cols=72 Identities=21% Similarity=0.232 Sum_probs=41.8
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 158 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 158 ~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
+..++++||||..+.....++. +. .... ....|-+++|+|++.........+.. .. .-.+-=++++|.|...
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~e-l~-~~~~-~~~~~~~~LVl~a~~~~~d~~~~~~~-f~---~~~~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEE-MI-ETMG-QVEPDYICLTLSASMKSKDMIEIITN-FK---DIHIDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHH-HH-HHHh-hhCCCeEEEEEcCccCHHHHHHHHHH-hC---CCCCCEEEEEeecCCC
Confidence 4689999999965422222322 21 2222 23567889999987654443333322 22 2344567899999865
No 427
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.94 E-value=0.0051 Score=59.18 Aligned_cols=85 Identities=29% Similarity=0.381 Sum_probs=57.0
Q ss_pred hcCcceEEEEeeCCCCCCh---HHHHHHHHhccCCCCCCEEEEEecCCCCChhhHH--HHHHHHHhcCCCceEEEcccCC
Q 015293 189 GINADCIVVLVDACKAPER---IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA--KKLEWYEKFTDVDEVIPVSAKY 263 (409)
Q Consensus 189 ~~~aDvillVvD~~~~~~~---~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~--~~~~~~~~~~~~~~iv~iSA~~ 263 (409)
..+.|-+++|+.+..+.-. .+..+. .... .++.-+||+||+|+.+..+.. +....+... + .+++.+||++
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv-~ae~--~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~-g-y~v~~~s~~~ 151 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLV-LAEA--GGIEPVIVLNKIDLLDDEEAAVKELLREYEDI-G-YPVLFVSAKN 151 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHH-HHHH--cCCcEEEEEEccccCcchHHHHHHHHHHHHhC-C-eeEEEecCcC
Confidence 3457778888887776522 222222 2222 577778889999999766554 233344433 3 3789999999
Q ss_pred CCCHHHHHHHHHhhC
Q 015293 264 GHGVEDIRDWILTKL 278 (409)
Q Consensus 264 g~gi~~L~~~L~~~l 278 (409)
+.|+++|.++|...+
T Consensus 152 ~~~~~~l~~~l~~~~ 166 (301)
T COG1162 152 GDGLEELAELLAGKI 166 (301)
T ss_pred cccHHHHHHHhcCCe
Confidence 999999999987654
No 428
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.89 E-value=0.0031 Score=62.49 Aligned_cols=75 Identities=19% Similarity=0.152 Sum_probs=49.9
Q ss_pred EEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCC------------ChHHHHHHHHhcc-
Q 015293 152 GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP------------ERIDEILEEGVGD- 218 (409)
Q Consensus 152 ~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~------------~~~~~~l~~~l~~- 218 (409)
..+..++..+.+||.+|. ...+ +.+..++.++++++||+|.++.. ......+..++..
T Consensus 177 ~~f~~~~~~~~~~DvgGq--r~~R-------~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~ 247 (342)
T smart00275 177 TAFIVKKLFFRMFDVGGQ--RSER-------KKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR 247 (342)
T ss_pred EEEEECCeEEEEEecCCc--hhhh-------hhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc
Confidence 345667788999999994 2222 33556688999999999998642 1111222222222
Q ss_pred CCCCCCEEEEEecCCCC
Q 015293 219 HKDKLPILLVLNKKDLI 235 (409)
Q Consensus 219 ~~~~~p~ilvlNK~Dl~ 235 (409)
...+.|++|++||.|+.
T Consensus 248 ~~~~~piil~~NK~D~~ 264 (342)
T smart00275 248 WFANTSIILFLNKIDLF 264 (342)
T ss_pred cccCCcEEEEEecHHhH
Confidence 12678999999999985
No 429
>PRK01889 GTPase RsgA; Reviewed
Probab=96.81 E-value=0.00082 Score=67.03 Aligned_cols=53 Identities=40% Similarity=0.566 Sum_probs=34.1
Q ss_pred EEecCCCChHHHHHHHhCCcceeeec-------CCCceEEEEEEEEeCCCeeEEEEeCCCCch
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTN-------KPQTTRHRILGICSGPEYQMILYDTPGIIE 171 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~-------~~~tt~~~~~~~~~~~~~~i~liDtpG~~~ 171 (409)
++|.+|+|||||+|.|+|........ ..++|.......+..+ ..++||||+..
T Consensus 200 lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~---~~l~DtpG~~~ 259 (356)
T PRK01889 200 LLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSG---GLLIDTPGMRE 259 (356)
T ss_pred EECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCC---CeecCCCchhh
Confidence 99999999999999999865432111 1234444333333322 35889999743
No 430
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.54 E-value=0.043 Score=55.06 Aligned_cols=64 Identities=20% Similarity=0.227 Sum_probs=36.7
Q ss_pred HHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCC--CCCHHHHHHHHHhh
Q 015293 210 EILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY--GHGVEDIRDWILTK 277 (409)
Q Consensus 210 ~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~--g~gi~~L~~~L~~~ 277 (409)
+...+.++. -++|+++++|=.+=.... -......+....+ .++++++|.. .+.|..+++.+.-.
T Consensus 170 ervI~ELk~--igKPFvillNs~~P~s~e-t~~L~~eL~ekY~-vpVlpvnc~~l~~~DI~~Il~~vLyE 235 (492)
T PF09547_consen 170 ERVIEELKE--IGKPFVILLNSTKPYSEE-TQELAEELEEKYD-VPVLPVNCEQLREEDITRILEEVLYE 235 (492)
T ss_pred HHHHHHHHH--hCCCEEEEEeCCCCCCHH-HHHHHHHHHHHhC-CcEEEeehHHcCHHHHHHHHHHHHhc
Confidence 344455565 689999999988754433 2333444444433 4788887753 33444444444433
No 431
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.52 E-value=0.019 Score=44.75 Aligned_cols=69 Identities=25% Similarity=0.287 Sum_probs=42.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
+.|.+|+||||+...|...-.. .+.. ...+. .+.++|+||....... + .......+|.+
T Consensus 4 ~~g~~G~Gktt~~~~l~~~l~~-----~g~~----v~~~~----d~iivD~~~~~~~~~~-~-------~~~~~~~~~~v 62 (99)
T cd01983 4 VTGKGGVGKTTLAANLAAALAK-----RGKR----VLLID----DYVLIDTPPGLGLLVL-L-------CLLALLAADLV 62 (99)
T ss_pred EECCCCCCHHHHHHHHHHHHHH-----CCCe----EEEEC----CEEEEeCCCCccchhh-h-------hhhhhhhCCEE
Confidence 6788999999999987643211 0000 00011 7899999995432110 0 13346789999
Q ss_pred EEEeeCCCCC
Q 015293 196 VVLVDACKAP 205 (409)
Q Consensus 196 llVvD~~~~~ 205 (409)
+++++.....
T Consensus 63 i~v~~~~~~~ 72 (99)
T cd01983 63 IIVTTPEALA 72 (99)
T ss_pred EEecCCchhh
Confidence 9999887554
No 432
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.51 E-value=0.019 Score=46.18 Aligned_cols=61 Identities=30% Similarity=0.435 Sum_probs=39.1
Q ss_pred cCCCChHHHHHHHhC------CcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 119 KPNVGKSTLANQMIG------QKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 119 ~~n~GKSsLln~l~~------~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
..|+||||+.-.|.. .++..+...++ +.++++|||+..... ....+..|
T Consensus 8 kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~--------------~d~viiD~p~~~~~~-----------~~~~l~~a 62 (104)
T cd02042 8 KGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ--------------YDYIIIDTPPSLGLL-----------TRNALAAA 62 (104)
T ss_pred CCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC--------------CCEEEEeCcCCCCHH-----------HHHHHHHC
Confidence 689999998877642 22222222222 678999999853211 22446779
Q ss_pred ceEEEEeeCCCC
Q 015293 193 DCIVVLVDACKA 204 (409)
Q Consensus 193 DvillVvD~~~~ 204 (409)
|.++++++.+..
T Consensus 63 d~viv~~~~~~~ 74 (104)
T cd02042 63 DLVLIPVQPSPL 74 (104)
T ss_pred CEEEEeccCCHH
Confidence 999999987643
No 433
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.0029 Score=71.04 Aligned_cols=116 Identities=22% Similarity=0.269 Sum_probs=63.5
Q ss_pred EEecCCCChHHHHHHHhCCcceee-------ecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh--hhhHh----HHHH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV-------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLD----SMMM 182 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v-------~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~--~~~l~----~~~~ 182 (409)
|||+||+||||++..- |.++... ...++ |+++-- +-+..-++|||.|-.... ..... ..+.
T Consensus 130 viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g-T~~cdw----wf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL 203 (1188)
T COG3523 130 VIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG-TRNCDW----WFTDEAVLIDTAGRYITQDSADEVDRAEWLGFL 203 (1188)
T ss_pred EecCCCCCcchHHhcc-cccCcchhhhccccccCCC-CcccCc----ccccceEEEcCCcceecccCcchhhHHHHHHHH
Confidence 9999999999998753 2222211 12222 443321 123467899999942211 11111 1111
Q ss_pred HHHH--HhhcCcceEEEEeeCCCCCChH--H---------HHHHHHhccCCCCCCEEEEEecCCCCCh
Q 015293 183 KNVR--SAGINADCIVVLVDACKAPERI--D---------EILEEGVGDHKDKLPILLVLNKKDLIKP 237 (409)
Q Consensus 183 ~~~~--~~~~~aDvillVvD~~~~~~~~--~---------~~l~~~l~~~~~~~p~ilvlNK~Dl~~~ 237 (409)
.-.+ ...+--|.||+.+|+.+-.... . ..+.++...+....|+.|++||.|+++.
T Consensus 204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 1111 2245679999999987544211 1 1122222223367999999999999864
No 434
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.35 E-value=0.005 Score=59.80 Aligned_cols=100 Identities=23% Similarity=0.281 Sum_probs=54.5
Q ss_pred CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce-----EEEEeeCCCCCChH--HHHHHHHhccCCCCCCEEEEE
Q 015293 157 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC-----IVVLVDACKAPERI--DEILEEGVGDHKDKLPILLVL 229 (409)
Q Consensus 157 ~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv-----illVvD~~~~~~~~--~~~l~~~l~~~~~~~p~ilvl 229 (409)
.+..++|+||+|-.|...+ |-..+ +.+...+...+. +++|+|++.+.... -..+.+.. + --=+++
T Consensus 220 r~~DvvliDTAGRLhnk~n-LM~EL-~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav-----~-l~GiIl 291 (340)
T COG0552 220 RGIDVVLIDTAGRLHNKKN-LMDEL-KKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAV-----G-LDGIIL 291 (340)
T ss_pred cCCCEEEEeCcccccCchh-HHHHH-HHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhc-----C-CceEEE
Confidence 3467999999996664433 32222 333344444444 88888999876432 22232222 1 125788
Q ss_pred ecCCCCChhh-HHHHHHHHHhcCCCceEEEcccCCCCCHHHHH
Q 015293 230 NKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 271 (409)
Q Consensus 230 NK~Dl~~~~~-~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~ 271 (409)
+|+|-..... +-.+...+ + .|+.++- -|+++++|.
T Consensus 292 TKlDgtAKGG~il~I~~~l----~-~PI~fiG--vGE~~~DL~ 327 (340)
T COG0552 292 TKLDGTAKGGIILSIAYEL----G-IPIKFIG--VGEGYDDLR 327 (340)
T ss_pred EecccCCCcceeeeHHHHh----C-CCEEEEe--CCCChhhcc
Confidence 9999543221 11122222 1 2666653 478888874
No 435
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.23 E-value=0.021 Score=50.40 Aligned_cols=106 Identities=18% Similarity=0.175 Sum_probs=59.9
Q ss_pred EEecCCCChHHHHHHHh------CCcceeeecCCCc-eEEE-EEE---------E---EeCCCeeEEEEeCCCCchhhhh
Q 015293 116 VLGKPNVGKSTLANQMI------GQKLSIVTNKPQT-TRHR-ILG---------I---CSGPEYQMILYDTPGIIEKKIH 175 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~------~~~~~~v~~~~~t-t~~~-~~~---------~---~~~~~~~i~liDtpG~~~~~~~ 175 (409)
.-+.+|+||||+.-.|. |.++..+...++. +... ... . .....+.++++|||+.....
T Consensus 5 ~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~~-- 82 (169)
T cd02037 5 MSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWRGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDE-- 82 (169)
T ss_pred ecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHhCcchHHHHHHHHHHhhcCCCCEEEEeCCCCCcHH--
Confidence 34679999999876653 5555444333222 1110 000 0 11246789999999853211
Q ss_pred hHhHHHHHHHHHh--hcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCC-EEEEEecCCC
Q 015293 176 MLDSMMMKNVRSA--GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDL 234 (409)
Q Consensus 176 ~l~~~~~~~~~~~--~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilvlNK~Dl 234 (409)
.... +..+|.+++|+............+...++. .+.+ .-+|+|+++.
T Consensus 83 ---------~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~--~~~~~~gvv~N~~~~ 133 (169)
T cd02037 83 ---------HLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKK--VNIPILGVVENMSYF 133 (169)
T ss_pred ---------HHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHh--cCCCeEEEEEcCCcc
Confidence 1111 257899999998765443333444445554 3444 4578999885
No 436
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=0.031 Score=55.22 Aligned_cols=87 Identities=24% Similarity=0.344 Sum_probs=52.9
Q ss_pred EEecCCCChHHHHHHHh------CCcceeeecCC-------------CceEEEEEEE----------------EeCCCee
Q 015293 116 VLGKPNVGKSTLANQMI------GQKLSIVTNKP-------------QTTRHRILGI----------------CSGPEYQ 160 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~------~~~~~~v~~~~-------------~tt~~~~~~~----------------~~~~~~~ 160 (409)
+||.-|+||||.+-+|. |.+.+.+.... ..++.+.++. +..+++.
T Consensus 106 fVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fd 185 (483)
T KOG0780|consen 106 FVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFD 185 (483)
T ss_pred EEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCc
Confidence 99999999999998885 33433332111 1122233332 1224567
Q ss_pred EEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCC
Q 015293 161 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP 205 (409)
Q Consensus 161 i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~ 205 (409)
++++||.|-++ ...+|-.++.+ +..++ ..|-+|||+|++-+.
T Consensus 186 vIIvDTSGRh~-qe~sLfeEM~~-v~~ai-~Pd~vi~VmDasiGQ 227 (483)
T KOG0780|consen 186 VIIVDTSGRHK-QEASLFEEMKQ-VSKAI-KPDEIIFVMDASIGQ 227 (483)
T ss_pred EEEEeCCCchh-hhHHHHHHHHH-HHhhc-CCCeEEEEEeccccH
Confidence 99999999644 23344444432 33333 589999999998765
No 437
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=95.92 E-value=0.068 Score=49.65 Aligned_cols=100 Identities=9% Similarity=0.116 Sum_probs=56.3
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCC----ChHHHHHHHHhccCCCCCCEEEEEecCC
Q 015293 158 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKD 233 (409)
Q Consensus 158 ~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~----~~~~~~l~~~l~~~~~~~p~ilvlNK~D 233 (409)
++.++|+||+|.... + ..-++..+|++|+=+-.+... .....++.+..+...+..|.-|++|++.
T Consensus 83 ~~d~VlvDleG~as~--------~---~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~ 151 (231)
T PF07015_consen 83 GFDFVLVDLEGGASE--------L---NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVP 151 (231)
T ss_pred CCCEEEEeCCCCCch--------h---HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCC
Confidence 467899999995321 1 122356799998866544322 1112333343333347799999999997
Q ss_pred CCChhhHHHH-HHHHHhcCCCceEEEcccCCCCCHHHHHH
Q 015293 234 LIKPGEIAKK-LEWYEKFTDVDEVIPVSAKYGHGVEDIRD 272 (409)
Q Consensus 234 l~~~~~~~~~-~~~~~~~~~~~~iv~iSA~~g~gi~~L~~ 272 (409)
-......... .+.+.. .|++.++-.......+++.
T Consensus 152 ~~~~~~~~~~~~e~~~~----lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 152 AARLTRAQRIISEQLES----LPVLDTELHERDAFRAMFS 187 (231)
T ss_pred cchhhHHHHHHHHHHhc----CCccccccccHHHHHHHHH
Confidence 4322222222 233322 4677777666655555554
No 438
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=95.90 E-value=0.027 Score=50.14 Aligned_cols=67 Identities=24% Similarity=0.185 Sum_probs=45.5
Q ss_pred CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 157 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 157 ~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
+.+.++++|||+.... .....+..||.+++++..+.........+.+.++. .+.|+.+|+||+|...
T Consensus 91 ~~~d~viiDtpp~~~~-----------~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~--~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIGC-----------PVIASLTGADAALLVTEPTPSGLHDLERAVELVRH--FGIPVGVVINKYDLND 157 (179)
T ss_pred cCCCEEEEECcCCCcH-----------HHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHH--cCCCEEEEEeCCCCCc
Confidence 4578999999974321 12334678999999999875543333444445554 4678899999999754
No 439
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=95.88 E-value=0.024 Score=54.52 Aligned_cols=90 Identities=21% Similarity=0.286 Sum_probs=59.9
Q ss_pred HHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcc
Q 015293 181 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 260 (409)
Q Consensus 181 ~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iS 260 (409)
.++.....+...|++|=|=|+.-+.......+...+ ..+|.|||+||+||+++.+...+...++..... .++..+
T Consensus 36 alr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~----~~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~-~~~~~~ 110 (335)
T KOG2485|consen 36 ALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFL----PPKPRIIVLNKMDLADPKEQKKIIQYLEWQNLE-SYIKLD 110 (335)
T ss_pred HHHHHHhhcccccEEEEeeccccCCccccHHHHHhc----CCCceEEEEecccccCchhhhHHHHHHHhhccc-chhhhh
Confidence 345666778999999999999988876655555444 468999999999999876666666665544322 333334
Q ss_pred cCC--CCCHHHHHHHHH
Q 015293 261 AKY--GHGVEDIRDWIL 275 (409)
Q Consensus 261 A~~--g~gi~~L~~~L~ 275 (409)
+.. ..++..++..+.
T Consensus 111 c~~~~~~~v~~l~~il~ 127 (335)
T KOG2485|consen 111 CNKDCNKQVSPLLKILT 127 (335)
T ss_pred hhhhhhhccccHHHHHH
Confidence 333 333555554443
No 440
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=0.03 Score=51.97 Aligned_cols=113 Identities=14% Similarity=0.130 Sum_probs=64.9
Q ss_pred EEEecCCCChHHHHHHHhCCccee----eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 115 SVLGKPNVGKSTLANQMIGQKLSI----VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~~~~~~----v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
+++|.-.+||||+-.....+.-+. +..+...|++.+.. .=..+.+||.||....-...+... ...+
T Consensus 31 lLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~----sfinf~v~dfPGQ~~~Fd~s~D~e------~iF~ 100 (347)
T KOG3887|consen 31 LLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISN----SFINFQVWDFPGQMDFFDPSFDYE------MIFR 100 (347)
T ss_pred EEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhh----hhcceEEeecCCccccCCCccCHH------HHHh
Confidence 399999999999877655443221 22233333333221 125688999999654211112111 2257
Q ss_pred CcceEEEEeeCCCCCChHHHHH-HHHhccC--CCCCCEEEEEecCCCCCh
Q 015293 191 NADCIVVLVDACKAPERIDEIL-EEGVGDH--KDKLPILLVLNKKDLIKP 237 (409)
Q Consensus 191 ~aDvillVvD~~~~~~~~~~~l-~~~l~~~--~~~~p~ilvlNK~Dl~~~ 237 (409)
.+-+++||+|+.+...+....+ .-..+.+ .+++.+=+.+.|+|-+..
T Consensus 101 ~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 101 GVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred ccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 8899999999865432211111 1112222 366778899999998754
No 441
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=95.61 E-value=0.039 Score=51.64 Aligned_cols=66 Identities=9% Similarity=0.015 Sum_probs=39.7
Q ss_pred CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCC-hHHH---HHHHHhccCCCCCCEEEEEecC
Q 015293 157 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE-RIDE---ILEEGVGDHKDKLPILLVLNKK 232 (409)
Q Consensus 157 ~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~-~~~~---~l~~~l~~~~~~~p~ilvlNK~ 232 (409)
+++.++|+||||... .....++..||.+|..+..+...- .... .+.+..+....+.|..+++|.+
T Consensus 82 ~~yD~iiID~pp~~~-----------~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~ 150 (231)
T PRK13849 82 QGFDYALADTHGGSS-----------ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRV 150 (231)
T ss_pred CCCCEEEEeCCCCcc-----------HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEec
Confidence 457899999999532 113344678999998887654321 1111 1222221222567888999998
Q ss_pred C
Q 015293 233 D 233 (409)
Q Consensus 233 D 233 (409)
+
T Consensus 151 ~ 151 (231)
T PRK13849 151 P 151 (231)
T ss_pred c
Confidence 7
No 442
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.52 E-value=0.018 Score=48.07 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=18.1
Q ss_pred eEEEecCCCChHHHHHHHhCCc
Q 015293 114 KSVLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 114 ~~ivG~~n~GKSsLln~l~~~~ 135 (409)
.+|.|.+|+|||++++.+....
T Consensus 7 ~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 7 LVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHH
T ss_pred cEEEcCCCCCHHHHHHHHHHHh
Confidence 3499999999999999998754
No 443
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.45 E-value=0.044 Score=45.51 Aligned_cols=19 Identities=37% Similarity=0.588 Sum_probs=17.1
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
+.|+||+|||+++..+...
T Consensus 3 l~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 3 LHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EESSTTSSHHHHHHHHHHH
T ss_pred EECcCCCCeeHHHHHHHhh
Confidence 7899999999999998754
No 444
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=95.08 E-value=0.04 Score=54.33 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=49.1
Q ss_pred EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCC-----hHHH------HHHHHhcc--C
Q 015293 153 ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE-----RIDE------ILEEGVGD--H 219 (409)
Q Consensus 153 ~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~-----~~~~------~l~~~l~~--~ 219 (409)
.++.++..+.++|++|.+.+ .+.+...+.+++++|||++.+.-.+ .... .+.+.+-. .
T Consensus 189 ~F~~k~~~f~~~DvGGQRse---------RrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~ 259 (354)
T KOG0082|consen 189 EFTIKGLKFRMFDVGGQRSE---------RKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW 259 (354)
T ss_pred EEEeCCCceEEEeCCCcHHH---------hhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence 46677889999999994322 1334456899999999999886431 1111 11111111 1
Q ss_pred CCCCCEEEEEecCCCCC
Q 015293 220 KDKLPILLVLNKKDLIK 236 (409)
Q Consensus 220 ~~~~p~ilvlNK~Dl~~ 236 (409)
..+.++|+.+||.|+..
T Consensus 260 F~~tsiiLFLNK~DLFe 276 (354)
T KOG0082|consen 260 FANTSIILFLNKKDLFE 276 (354)
T ss_pred cccCcEEEEeecHHHHH
Confidence 25789999999999864
No 445
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.01 E-value=0.017 Score=42.23 Aligned_cols=17 Identities=35% Similarity=0.515 Sum_probs=16.0
Q ss_pred EEecCCCChHHHHHHHh
Q 015293 116 VLGKPNVGKSTLANQMI 132 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~ 132 (409)
|.|+.|+|||||++++.
T Consensus 28 i~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 28 ITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 99999999999999974
No 446
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.92 E-value=0.4 Score=45.91 Aligned_cols=141 Identities=13% Similarity=0.121 Sum_probs=67.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCC-------CCch-hhhhhHhHHHHHHHHH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTP-------GIIE-KKIHMLDSMMMKNVRS 187 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtp-------G~~~-~~~~~l~~~~~~~~~~ 187 (409)
|.|.|++||||+.+.|...-.. .+..+.+++.. .+.+ ......+..+...+..
T Consensus 6 l~G~P~SGKTt~a~~L~~~~~~-------------------~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r 66 (270)
T PF08433_consen 6 LCGLPCSGKTTRAKELKKYLEE-------------------KGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVER 66 (270)
T ss_dssp EE--TTSSHHHHHHHHHHHHHH-------------------TT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHH
T ss_pred EEcCCCCcHHHHHHHHHHHHHh-------------------cCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHH
Confidence 8899999999999998753211 11112222211 0101 1223345555666666
Q ss_pred hhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC---------------hhhHHHHHHHHHhcCC
Q 015293 188 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK---------------PGEIAKKLEWYEKFTD 252 (409)
Q Consensus 188 ~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~---------------~~~~~~~~~~~~~~~~ 252 (409)
.+..-+ |+++|..........++..+.+. .+.+..+|.-.+++.. .+-+..+...++....
T Consensus 67 ~ls~~~--iVI~Dd~nYiKg~RYelyclAr~--~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~P~~ 142 (270)
T PF08433_consen 67 ALSKDT--IVILDDNNYIKGMRYELYCLARA--YGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEEPDP 142 (270)
T ss_dssp HHTT-S--EEEE-S---SHHHHHHHHHHHHH--TT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---TTS
T ss_pred hhccCe--EEEEeCCchHHHHHHHHHHHHHH--cCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcCCCC
Confidence 665543 44688887777777778777777 6788888877777521 1112233333332211
Q ss_pred ---C-ceEEEcc-cCCCCCHHHHHHHHHhhCC
Q 015293 253 ---V-DEVIPVS-AKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 253 ---~-~~iv~iS-A~~g~gi~~L~~~L~~~l~ 279 (409)
+ .|.|.+. .-....++++.+.|....+
T Consensus 143 ~nrWD~plf~i~~~~~~~~~~~I~~~l~~~~~ 174 (270)
T PF08433_consen 143 KNRWDSPLFTIDSSDEELPLEEIWNALFENKP 174 (270)
T ss_dssp S-GGGS-SEEEE-TTS---HHHHHHHHHHHHT
T ss_pred CCCccCCeEEEecCCCCCCHHHHHHHHHhcCC
Confidence 1 1334443 5666778899888865443
No 447
>PHA02518 ParA-like protein; Provisional
Probab=94.87 E-value=0.17 Score=45.94 Aligned_cols=67 Identities=18% Similarity=0.151 Sum_probs=37.3
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhc---cCCCCCC-EEEEEecCC
Q 015293 158 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVG---DHKDKLP-ILLVLNKKD 233 (409)
Q Consensus 158 ~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~---~~~~~~p-~ilvlNK~D 233 (409)
.+.++++||||-.. .....++..||.+|+++..+...-.....+...++ ......| ..++.|+.+
T Consensus 76 ~~d~viiD~p~~~~-----------~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~ 144 (211)
T PHA02518 76 GYDYVVVDGAPQDS-----------ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAI 144 (211)
T ss_pred cCCEEEEeCCCCcc-----------HHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccC
Confidence 46799999998422 11334567899999999886533111111222221 1113344 456778776
Q ss_pred CC
Q 015293 234 LI 235 (409)
Q Consensus 234 l~ 235 (409)
..
T Consensus 145 ~~ 146 (211)
T PHA02518 145 KN 146 (211)
T ss_pred Cc
Confidence 43
No 448
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=94.82 E-value=0.018 Score=62.87 Aligned_cols=83 Identities=20% Similarity=0.310 Sum_probs=49.6
Q ss_pred EecCCCChHHHHHHHhCCcceeeec--CCCceEEEEEEEEe---CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 117 LGKPNVGKSTLANQMIGQKLSIVTN--KPQTTRHRILGICS---GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 117 vG~~n~GKSsLln~l~~~~~~~v~~--~~~tt~~~~~~~~~---~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
+|.-++|||||+|.|+|..+..... ..+||+-....... .....+.++|+-|.-......-...-.+.+.-++.-
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~d~~er~~~~~fe~~~alf~la~ 80 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDESGRQQTTKGIWMAKAKEVESSESNILVLDVEGTDGRERGEDQDFERKSALFALAV 80 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCccccccccccccchhhHHHhccccccCCCceEEEeCCCCCchhhccccchHHHHHHHHHHh
Confidence 4888999999999999999874332 23455432222211 123578899998863211111111122445666778
Q ss_pred cceEEEEe
Q 015293 192 ADCIVVLV 199 (409)
Q Consensus 192 aDvillVv 199 (409)
+|++|+=+
T Consensus 81 s~~~iiN~ 88 (742)
T PF05879_consen 81 SDVLIINM 88 (742)
T ss_pred hhheeeeh
Confidence 89988755
No 449
>PRK04195 replication factor C large subunit; Provisional
Probab=94.76 E-value=0.42 Score=49.69 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=18.2
Q ss_pred eEEEecCCCChHHHHHHHhCC
Q 015293 114 KSVLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 114 ~~ivG~~n~GKSsLln~l~~~ 134 (409)
-+|.|+||+||||++++|...
T Consensus 42 lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 42 LLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 349999999999999999754
No 450
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.75 E-value=0.21 Score=50.35 Aligned_cols=45 Identities=27% Similarity=0.513 Sum_probs=29.5
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHH--HhhcCcceEEEEeeCCCCCCh
Q 015293 158 EYQMILYDTPGIIEKKIHMLDSMMMKNVR--SAGINADCIVVLVDACKAPER 207 (409)
Q Consensus 158 ~~~i~liDtpG~~~~~~~~l~~~~~~~~~--~~~~~aDvillVvD~~~~~~~ 207 (409)
++.++++||+|-++ ++..++.+.. ...-..|=++||+|++-+...
T Consensus 182 ~~DvvIvDTAGRl~-----ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA 228 (451)
T COG0541 182 GYDVVIVDTAGRLH-----IDEELMDELKEIKEVINPDETLLVVDAMIGQDA 228 (451)
T ss_pred CCCEEEEeCCCccc-----ccHHHHHHHHHHHhhcCCCeEEEEEecccchHH
Confidence 35799999999543 2233333332 223478999999999987533
No 451
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.67 E-value=0.02 Score=51.73 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=26.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI 150 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~ 150 (409)
|+|++|+|||||+++|+..........+.|||-+-
T Consensus 9 l~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r 43 (186)
T PRK14737 9 ISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPR 43 (186)
T ss_pred EECCCCCCHHHHHHHHHhcCCccccccCccCCCCC
Confidence 99999999999999998764333344567777543
No 452
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=94.64 E-value=0.12 Score=51.68 Aligned_cols=17 Identities=41% Similarity=0.599 Sum_probs=15.2
Q ss_pred EEecCCCChHHHHHHHh
Q 015293 116 VLGKPNVGKSTLANQMI 132 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~ 132 (409)
++|+.++|||||...|.
T Consensus 78 vvG~vDSGKSTLt~~La 94 (398)
T COG1341 78 VVGPVDSGKSTLTTYLA 94 (398)
T ss_pred EECCcCcCHHHHHHHHH
Confidence 99999999999987665
No 453
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.084 Score=55.16 Aligned_cols=26 Identities=35% Similarity=0.647 Sum_probs=22.5
Q ss_pred CCCeeE-EEecCCCChHHHHHHHhCCc
Q 015293 110 HPNHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 110 ~~~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
+|.+|+ +=|+||+|||+|.|++.|.-
T Consensus 221 ~PprGvLlHGPPGCGKT~lA~AiAgel 247 (802)
T KOG0733|consen 221 RPPRGVLLHGPPGCGKTSLANAIAGEL 247 (802)
T ss_pred CCCCceeeeCCCCccHHHHHHHHhhhc
Confidence 566777 88999999999999998864
No 454
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.54 E-value=0.033 Score=51.04 Aligned_cols=33 Identities=30% Similarity=0.360 Sum_probs=23.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH 148 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~ 148 (409)
|+|.+|+|||||+++|...........+.||+.
T Consensus 18 i~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~ 50 (206)
T PRK14738 18 ISGPSGVGKDAVLARMRERKLPFHFVVTATTRP 50 (206)
T ss_pred EECcCCCCHHHHHHHHHhcCCcccccccccCCC
Confidence 999999999999999975433223344555543
No 455
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=94.53 E-value=0.2 Score=47.61 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=34.9
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccC--CCCCCE-EEEEecCCC
Q 015293 159 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH--KDKLPI-LLVLNKKDL 234 (409)
Q Consensus 159 ~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~--~~~~p~-ilvlNK~Dl 234 (409)
+.++++||||.... . .+..++..||.+|+++..+...-.....+.+.++.. ..+.++ .+|+|++|.
T Consensus 116 yD~vIIDt~g~~~~--~--------~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 116 YDVILFDVLGDVVC--G--------GFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred CCEEEEeCCCCccc--c--------cchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 56788899874221 1 112235689999999877543211111222211110 134443 478999984
No 456
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.53 E-value=0.18 Score=41.92 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=18.5
Q ss_pred EEEecCCCChHHHHHHHhCCc
Q 015293 115 SVLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~~~ 135 (409)
++.|.||+|||+|++.+...-
T Consensus 23 ~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 23 LLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 399999999999999997654
No 457
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.38 E-value=0.026 Score=52.82 Aligned_cols=20 Identities=40% Similarity=0.630 Sum_probs=18.5
Q ss_pred EEecCCCChHHHHHHHhCCc
Q 015293 116 VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~ 135 (409)
|+|++|||||||+|.+.|-.
T Consensus 34 ilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 34 ILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999998754
No 458
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.37 E-value=0.039 Score=46.58 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.1
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCcc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQKL 136 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~~ 136 (409)
...+ |+|.+|+|||||++.|.|...
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCEEEEEccCCCccccceeeeccccc
Confidence 3344 999999999999999998764
No 459
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.29 E-value=0.16 Score=48.07 Aligned_cols=19 Identities=42% Similarity=0.602 Sum_probs=17.8
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|+.|+|||||++.|.|-
T Consensus 33 iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 33 ILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EECCCCCCHHHHHHHHhcc
Confidence 9999999999999999873
No 460
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.19 E-value=0.15 Score=49.28 Aligned_cols=102 Identities=11% Similarity=0.144 Sum_probs=57.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh----------------hhhHhH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK----------------IHMLDS 179 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~----------------~~~l~~ 179 (409)
|+|.+|.|||++++++....... .+ +..+ ..+++.+.+|.-.... .... .
T Consensus 66 ivG~snnGKT~Ii~rF~~~hp~~-~d-~~~~-----------~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~-~ 131 (302)
T PF05621_consen 66 IVGDSNNGKTMIIERFRRLHPPQ-SD-EDAE-----------RIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRV-A 131 (302)
T ss_pred EecCCCCcHHHHHHHHHHHCCCC-CC-CCCc-----------cccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCH-H
Confidence 99999999999999998765431 11 1111 1467778877532211 0011 1
Q ss_pred HHHHHHHHhhcCcceEEEEeeCCCCC----ChHHHHHHHHhccCC--CCCCEEEEEec
Q 015293 180 MMMKNVRSAGINADCIVVLVDACKAP----ERIDEILEEGVGDHK--DKLPILLVLNK 231 (409)
Q Consensus 180 ~~~~~~~~~~~~aDvillVvD~~~~~----~~~~~~l~~~l~~~~--~~~p~ilvlNK 231 (409)
.....+...++...+=++|+|--+.. ......+++.++.++ ..+|+|.|+++
T Consensus 132 ~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 132 KLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 12333445677778888888855432 222233444444332 46788877654
No 461
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=94.02 E-value=0.062 Score=54.26 Aligned_cols=74 Identities=19% Similarity=0.210 Sum_probs=47.5
Q ss_pred EEeC-CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCC--------h-H---HHHHHHHhcc-
Q 015293 153 ICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE--------R-I---DEILEEGVGD- 218 (409)
Q Consensus 153 ~~~~-~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~--------~-~---~~~l~~~l~~- 218 (409)
.+.. ++..+.++|++|...+. +.|...+.++++||||++.+.... . . ...+..+...
T Consensus 229 ~f~~~~~~~~~~~DvGGqr~eR---------kKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~ 299 (389)
T PF00503_consen 229 DFNFSGSRKFRLIDVGGQRSER---------KKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNP 299 (389)
T ss_dssp EEEE-TTEEEEEEEETSSGGGG---------GGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSG
T ss_pred EEEeecccccceecCCCCchhh---------hhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCc
Confidence 3455 78899999999964322 235566789999999999874321 1 1 1112222221
Q ss_pred CCCCCCEEEEEecCCCC
Q 015293 219 HKDKLPILLVLNKKDLI 235 (409)
Q Consensus 219 ~~~~~p~ilvlNK~Dl~ 235 (409)
...+.|+||++||+|+.
T Consensus 300 ~~~~~~iil~lnK~D~f 316 (389)
T PF00503_consen 300 WFKNTPIILFLNKIDLF 316 (389)
T ss_dssp GGTTSEEEEEEE-HHHH
T ss_pred ccccCceEEeeecHHHH
Confidence 12579999999999974
No 462
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.01 E-value=0.036 Score=49.21 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=30.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCC
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTP 167 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtp 167 (409)
|+|++|+|||||++.|.+...........+|+.+..+. ..+..+.+++..
T Consensus 6 l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~ 55 (180)
T TIGR03263 6 ISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKE 55 (180)
T ss_pred EECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHH
Confidence 99999999999999999864333333344555433222 233445555543
No 463
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.96 E-value=0.046 Score=46.73 Aligned_cols=50 Identities=22% Similarity=0.189 Sum_probs=30.1
Q ss_pred EEecCCCChHHHHHHHhCCcc-eeeecCCCceEEEEEEEEeCCCeeEEEEeCC
Q 015293 116 VLGKPNVGKSTLANQMIGQKL-SIVTNKPQTTRHRILGICSGPEYQMILYDTP 167 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~-~~v~~~~~tt~~~~~~~~~~~~~~i~liDtp 167 (409)
|+|++|+|||||++.|..... ........||+....+. .++..+.++|..
T Consensus 4 i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~ 54 (137)
T cd00071 4 LSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKE 54 (137)
T ss_pred EECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHH
Confidence 899999999999999987521 11223344555433221 244555666543
No 464
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.89 E-value=0.042 Score=45.26 Aligned_cols=19 Identities=42% Similarity=0.704 Sum_probs=17.4
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|.|.|||||||+.+.|...
T Consensus 4 I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 4 ISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEESTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 8999999999999999764
No 465
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.76 E-value=0.058 Score=49.01 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=18.4
Q ss_pred EEecCCCChHHHHHHHhCCc
Q 015293 116 VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~ 135 (409)
|+|.+|+|||||++.|.+..
T Consensus 10 i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 10 LSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred EECCCCCCHHHHHHHHHhhC
Confidence 99999999999999998753
No 466
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=0.24 Score=48.78 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=21.8
Q ss_pred cCCCeeE-EEecCCCChHHHHHHHhCCc
Q 015293 109 SHPNHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 109 ~~~~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
.+|..|+ +-|+||+|||-|..+..+..
T Consensus 182 I~PPKGVLLYGPPGTGKTLLAkAVA~~T 209 (406)
T COG1222 182 IDPPKGVLLYGPPGTGKTLLAKAVANQT 209 (406)
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 4566777 99999999999999876543
No 467
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.55 E-value=0.27 Score=42.01 Aligned_cols=20 Identities=40% Similarity=0.451 Sum_probs=17.5
Q ss_pred EEecCCCChHHHHHHHhCCc
Q 015293 116 VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~ 135 (409)
|.|.||+|||+++..+.+.-
T Consensus 4 i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 4 VFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 78999999999999997643
No 468
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.41 E-value=0.028 Score=50.28 Aligned_cols=36 Identities=31% Similarity=0.415 Sum_probs=26.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG 152 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~ 152 (409)
|.|++|||||||+.+|+... ...-....|||.+-.+
T Consensus 9 lsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~g 44 (191)
T COG0194 9 LSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPG 44 (191)
T ss_pred EECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCC
Confidence 89999999999999999876 3333444566554433
No 469
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.39 E-value=2.8 Score=39.35 Aligned_cols=18 Identities=39% Similarity=0.693 Sum_probs=16.4
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
++|.||+||||+...|..
T Consensus 4 l~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 4 LTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 899999999999999863
No 470
>PF05729 NACHT: NACHT domain
Probab=93.32 E-value=0.25 Score=42.49 Aligned_cols=19 Identities=42% Similarity=0.677 Sum_probs=17.0
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|.|.||+||||++..+...
T Consensus 5 I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 5 ISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EECCCCCChHHHHHHHHHH
Confidence 8999999999999988753
No 471
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=93.31 E-value=0.062 Score=55.23 Aligned_cols=82 Identities=26% Similarity=0.343 Sum_probs=49.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeec---CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTN---KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~---~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++|.-.+|||||+|.|.|.++..... ..+||+-.-...+..-...+.++|.-|--......=...-.+.+.-++.-+
T Consensus 42 vmG~QSSGKSTLLN~LFgTnF~~MDA~~gRqQTTKGIWlar~~~i~p~i~vmDvEGTDGrERGEDqdFErksALFaiavS 121 (772)
T KOG2203|consen 42 VMGSQSSGKSTLLNHLFGTNFREMDAFKGRQQTTKGIWLARCAGIEPCILVMDVEGTDGRERGEDQDFERKSALFAIAVS 121 (772)
T ss_pred EecCcccchHHHHHHHhccChHHHHhhhccccccchhhHHhhcCCCCceEEEecccCCcccccccccHHHHhHHHHHhhh
Confidence 99999999999999999998764332 234554333333333334578889877421110000112234456677788
Q ss_pred ceEEE
Q 015293 193 DCIVV 197 (409)
Q Consensus 193 Dvill 197 (409)
|++|+
T Consensus 122 evviv 126 (772)
T KOG2203|consen 122 EVVIV 126 (772)
T ss_pred heehh
Confidence 88775
No 472
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.28 E-value=0.07 Score=48.76 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.4
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|..
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444 99999999999999999854
No 473
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=93.28 E-value=0.052 Score=58.25 Aligned_cols=45 Identities=13% Similarity=0.224 Sum_probs=32.4
Q ss_pred eeEEEEeCCCCchh----hhhhHhHHHHHHHHHhhcCcceEEEEeeCCC
Q 015293 159 YQMILYDTPGIIEK----KIHMLDSMMMKNVRSAGINADCIVVLVDACK 203 (409)
Q Consensus 159 ~~i~liDtpG~~~~----~~~~l~~~~~~~~~~~~~~aDvillVvD~~~ 203 (409)
..+.++|+||+... ....+..........++.....+++.+...+
T Consensus 132 ~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an 180 (657)
T KOG0446|consen 132 ANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPAN 180 (657)
T ss_pred chhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchh
Confidence 35889999998552 2234566666677788888899888887654
No 474
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.21 E-value=0.072 Score=49.63 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=20.5
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4444 99999999999999999854
No 475
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.19 E-value=0.074 Score=48.86 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=20.4
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|-.
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3444 99999999999999999864
No 476
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=93.18 E-value=0.071 Score=47.73 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=19.6
Q ss_pred eeE-EEecCCCChHHHHHHHhCCc
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
..+ |+|++|+|||||+|-+.|-.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhcc
Confidence 344 99999999999999998744
No 477
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.17 E-value=0.071 Score=47.73 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.4
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|+.|+|||||++.|.|-.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3444 99999999999999999864
No 478
>COG3911 Predicted ATPase [General function prediction only]
Probab=93.10 E-value=0.097 Score=45.19 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEecCCCChHHHHHHHhCCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLS 137 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~ 137 (409)
+.|.||+|||||+++|....++
T Consensus 14 ltGgpGaGKTtLL~aLa~~Gfa 35 (183)
T COG3911 14 LTGGPGAGKTTLLAALARAGFA 35 (183)
T ss_pred EeCCCCCcHHHHHHHHHHcCce
Confidence 8999999999999999887765
No 479
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.07 E-value=0.083 Score=45.47 Aligned_cols=25 Identities=32% Similarity=0.616 Sum_probs=20.9
Q ss_pred CCeeE-EEecCCCChHHHHHHHhCCc
Q 015293 111 PNHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 111 ~~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
+...+ |+|.+|+|||||++.|.|..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34444 99999999999999999864
No 480
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.02 E-value=0.071 Score=45.20 Aligned_cols=18 Identities=44% Similarity=0.693 Sum_probs=16.7
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
++|.||+||||++..|..
T Consensus 4 ~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 4 LCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 899999999999999873
No 481
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.01 E-value=0.081 Score=48.59 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=20.4
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|-.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444 99999999999999999854
No 482
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.99 E-value=0.064 Score=49.81 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=18.6
Q ss_pred EEecCCCChHHHHHHHhCCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKL 136 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~ 136 (409)
|+|++|+|||||+|.|-+-..
T Consensus 36 I~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 36 IVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EECCCCCCHHHHHHHHhcccC
Confidence 999999999999999877543
No 483
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=92.98 E-value=0.084 Score=47.46 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=20.2
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|-.
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344 99999999999999999854
No 484
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=92.89 E-value=0.086 Score=48.30 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.4
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|..
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4444 99999999999999999864
No 485
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.88 E-value=0.087 Score=48.54 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=20.3
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|.+|+|||||++.|.|--
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444 99999999999999999853
No 486
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.88 E-value=0.15 Score=51.86 Aligned_cols=75 Identities=19% Similarity=0.321 Sum_probs=43.8
Q ss_pred CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHH--HHHHHHhccCCCCCCE---EEEEec
Q 015293 157 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID--EILEEGVGDHKDKLPI---LLVLNK 231 (409)
Q Consensus 157 ~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~--~~l~~~l~~~~~~~p~---ilvlNK 231 (409)
.++.++|+||+|-.|....-+. .+.+- .-....|.|++|-.+--+.+..+ ..+...+.. ...|. -++++|
T Consensus 465 ~gfDVvLiDTAGR~~~~~~lm~-~l~k~--~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~--~~~~r~id~~~ltk 539 (587)
T KOG0781|consen 465 QGFDVVLIDTAGRMHNNAPLMT-SLAKL--IKVNKPDLILFVGEALVGNDSVDQLKKFNRALAD--HSTPRLIDGILLTK 539 (587)
T ss_pred cCCCEEEEeccccccCChhHHH-HHHHH--HhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhc--CCCccccceEEEEe
Confidence 4567999999996553322221 11111 12468899999988765554433 233333443 22332 478999
Q ss_pred CCCCC
Q 015293 232 KDLIK 236 (409)
Q Consensus 232 ~Dl~~ 236 (409)
+|-++
T Consensus 540 ~dtv~ 544 (587)
T KOG0781|consen 540 FDTVD 544 (587)
T ss_pred ccchh
Confidence 99765
No 487
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.87 E-value=0.086 Score=47.17 Aligned_cols=23 Identities=39% Similarity=0.329 Sum_probs=19.1
Q ss_pred CCeeE-EEecCCCChHHHHHHHhC
Q 015293 111 PNHKS-VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 111 ~~~~~-ivG~~n~GKSsLln~l~~ 133 (409)
+...+ |+|++|+|||||++.+++
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 34455 999999999999999864
No 488
>PRK08181 transposase; Validated
Probab=92.87 E-value=0.16 Score=48.59 Aligned_cols=19 Identities=37% Similarity=0.415 Sum_probs=17.1
Q ss_pred EEEecCCCChHHHHHHHhC
Q 015293 115 SVLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~ 133 (409)
+++|+||+|||.|+.++..
T Consensus 110 ll~Gp~GtGKTHLa~Aia~ 128 (269)
T PRK08181 110 LLFGPPGGGKSHLAAAIGL 128 (269)
T ss_pred EEEecCCCcHHHHHHHHHH
Confidence 3999999999999999864
No 489
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.85 E-value=0.087 Score=48.00 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=20.3
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|-.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444 99999999999999999854
No 490
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=92.79 E-value=0.088 Score=47.86 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=20.5
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|.+|+|||||++.|.|.-
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445 99999999999999999854
No 491
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.78 E-value=0.095 Score=43.11 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=18.8
Q ss_pred EEEecCCCChHHHHHHHhCCcc
Q 015293 115 SVLGKPNVGKSTLANQMIGQKL 136 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~~~~ 136 (409)
+|+|+||+||||++..+...-.
T Consensus 6 ~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 6 LIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred EEECCCCCcHHHHHHHHHhccC
Confidence 3999999999999999976543
No 492
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.77 E-value=0.092 Score=47.47 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.0
Q ss_pred CCeeE-EEecCCCChHHHHHHHhCCc
Q 015293 111 PNHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 111 ~~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
+...+ |+|.+|+|||||++.|.|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34445 99999999999999999864
No 493
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.76 E-value=0.76 Score=41.75 Aligned_cols=18 Identities=28% Similarity=0.165 Sum_probs=16.9
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|+.++|||||++.+.+
T Consensus 34 l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 34 ITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EECCCCCccHHHHHHHHH
Confidence 999999999999999974
No 494
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=92.76 E-value=0.091 Score=48.07 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=20.9
Q ss_pred CCeeE-EEecCCCChHHHHHHHhCCc
Q 015293 111 PNHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 111 ~~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
+...+ |+|++|+|||||++.|.|..
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34445 99999999999999999854
No 495
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=92.74 E-value=0.094 Score=47.95 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=20.5
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|..
T Consensus 26 G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4444 99999999999999999854
No 496
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.74 E-value=0.094 Score=47.91 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.4
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444 99999999999999999853
No 497
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.72 E-value=0.098 Score=46.60 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=20.4
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4444 99999999999999999863
No 498
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=92.72 E-value=0.095 Score=48.25 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=20.7
Q ss_pred CCeeE-EEecCCCChHHHHHHHhCCc
Q 015293 111 PNHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 111 ~~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
+...+ |+|++|+|||||++.|.|-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444 99999999999999998864
No 499
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.66 E-value=0.098 Score=45.96 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=20.9
Q ss_pred CCeeE-EEecCCCChHHHHHHHhCCc
Q 015293 111 PNHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 111 ~~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
+...+ |+|.+|+|||||++.|.|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34445 99999999999999999864
No 500
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.63 E-value=0.099 Score=47.87 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=20.4
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|-.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444 99999999999999999853
Done!