Query 015293
Match_columns 409
No_of_seqs 547 out of 3954
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 10:04:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015293.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015293hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iev_A GTP-binding protein ERA 100.0 1.1E-58 3.9E-63 450.5 28.8 291 111-403 8-307 (308)
2 1wf3_A GTP-binding protein; GT 100.0 1.2E-57 4E-62 441.7 26.8 285 116-404 12-298 (301)
3 1ega_A Protein (GTP-binding pr 100.0 6.9E-55 2.4E-59 422.4 26.6 287 116-405 13-300 (301)
4 3gee_A MNME, tRNA modification 99.9 4E-24 1.4E-28 218.4 12.0 156 116-279 238-397 (476)
5 1mky_A Probable GTP-binding pr 99.9 2.1E-23 7.1E-28 211.8 12.2 160 116-280 6-166 (439)
6 4dhe_A Probable GTP-binding pr 99.9 1.6E-22 5.5E-27 185.3 16.2 166 114-281 31-212 (223)
7 2dyk_A GTP-binding protein; GT 99.9 6.7E-23 2.3E-27 177.4 11.9 156 116-279 6-161 (161)
8 2aka_B Dynamin-1; fusion prote 99.9 1.4E-23 5E-28 201.3 6.0 201 114-319 28-292 (299)
9 3geh_A MNME, tRNA modification 99.9 2.9E-23 9.8E-28 211.3 7.6 158 116-282 229-386 (462)
10 2gj8_A MNME, tRNA modification 99.9 3E-22 1E-26 177.0 12.7 160 113-280 5-166 (172)
11 2qpt_A EH domain-containing pr 99.9 4.6E-25 1.6E-29 229.4 -6.8 226 116-363 70-340 (550)
12 2hjg_A GTP-binding protein ENG 99.9 1.2E-22 4E-27 206.1 9.8 219 116-357 8-233 (436)
13 3pqc_A Probable GTP-binding pr 99.9 3.2E-21 1.1E-25 172.1 17.2 162 113-279 24-193 (195)
14 3iby_A Ferrous iron transport 99.9 6.2E-22 2.1E-26 186.8 12.6 164 116-287 6-173 (256)
15 1jwy_B Dynamin A GTPase domain 99.9 1.6E-22 5.4E-27 195.7 8.6 199 116-319 29-298 (315)
16 2hjg_A GTP-binding protein ENG 99.9 3.7E-22 1.3E-26 202.3 10.6 165 114-280 177-349 (436)
17 2qu8_A Putative nucleolar GTP- 99.9 7.1E-21 2.4E-25 175.7 18.3 166 113-279 30-204 (228)
18 1svi_A GTP-binding protein YSX 99.9 7.7E-21 2.6E-25 170.1 17.8 162 113-279 24-194 (195)
19 2xtp_A GTPase IMAP family memb 99.9 1E-22 3.5E-27 191.9 5.4 180 113-295 23-224 (260)
20 1xzp_A Probable tRNA modificat 99.9 3E-22 1E-26 204.7 8.4 157 116-279 248-404 (482)
21 1zj6_A ADP-ribosylation factor 99.9 2.2E-20 7.5E-25 166.5 18.9 161 113-286 17-184 (187)
22 1mky_A Probable GTP-binding pr 99.9 6.8E-21 2.3E-25 193.2 16.4 165 114-280 182-355 (439)
23 1f6b_A SAR1; gtpases, N-termin 99.8 1.4E-20 4.9E-25 170.0 16.3 153 113-278 26-197 (198)
24 1wxq_A GTP-binding protein; st 99.8 1.8E-22 6.1E-27 201.9 3.7 245 116-377 5-369 (397)
25 3a1s_A Iron(II) transport prot 99.8 7.3E-21 2.5E-25 179.7 14.3 157 116-279 10-166 (258)
26 1fzq_A ADP-ribosylation factor 99.8 5.3E-20 1.8E-24 163.7 19.0 155 112-279 16-177 (181)
27 4dcu_A GTP-binding protein ENG 99.8 2.6E-21 8.8E-26 197.3 11.8 166 113-280 196-369 (456)
28 3i8s_A Ferrous iron transport 99.8 1.8E-21 6.2E-26 185.4 9.7 161 114-281 5-170 (274)
29 3q72_A GTP-binding protein RAD 99.8 6.5E-21 2.2E-25 165.8 12.2 152 116-278 7-162 (166)
30 2fg5_A RAB-22B, RAS-related pr 99.8 2.9E-20 1E-24 166.7 16.4 156 116-282 28-188 (192)
31 2nzj_A GTP-binding protein REM 99.8 8.7E-21 3E-25 166.3 12.4 156 114-278 6-167 (175)
32 1r2q_A RAS-related protein RAB 99.8 1.5E-20 5.1E-25 163.6 13.6 154 116-280 11-169 (170)
33 4dcu_A GTP-binding protein ENG 99.8 3.8E-21 1.3E-25 196.0 11.2 158 116-280 28-185 (456)
34 1m2o_B GTP-binding protein SAR 99.8 4.2E-20 1.4E-24 165.7 16.7 152 114-278 25-190 (190)
35 4bas_A ADP-ribosylation factor 99.8 5.6E-20 1.9E-24 164.9 16.8 154 113-279 18-188 (199)
36 2wji_A Ferrous iron transport 99.8 4.8E-21 1.6E-25 167.8 9.4 157 116-279 8-164 (165)
37 1z0j_A RAB-22, RAS-related pro 99.8 3.6E-20 1.2E-24 161.3 14.9 154 116-279 11-168 (170)
38 1upt_A ARL1, ADP-ribosylation 99.8 6.6E-20 2.3E-24 160.0 16.2 154 113-279 8-168 (171)
39 2h17_A ADP-ribosylation factor 99.8 1.1E-19 3.9E-24 161.1 17.7 149 116-277 26-180 (181)
40 1r8s_A ADP-ribosylation factor 99.8 4.4E-20 1.5E-24 160.2 14.7 151 116-279 5-161 (164)
41 2efe_B Small GTP-binding prote 99.8 7.3E-20 2.5E-24 161.4 16.0 155 116-281 17-176 (181)
42 1c1y_A RAS-related protein RAP 99.8 4.8E-20 1.6E-24 160.1 14.2 151 116-278 8-165 (167)
43 3gj0_A GTP-binding nuclear pro 99.8 3.1E-21 1E-25 177.0 6.9 156 116-283 20-178 (221)
44 2lkc_A Translation initiation 99.8 1.6E-20 5.4E-25 165.3 11.2 154 113-279 9-170 (178)
45 1x3s_A RAS-related protein RAB 99.8 4.5E-20 1.6E-24 164.7 14.1 161 116-287 20-185 (195)
46 3izq_1 HBS1P, elongation facto 99.8 1.1E-20 3.7E-25 198.7 11.5 199 113-331 168-433 (611)
47 1ek0_A Protein (GTP-binding pr 99.8 3.1E-20 1.1E-24 161.6 12.5 154 116-279 8-168 (170)
48 3k53_A Ferrous iron transport 99.8 3E-20 1E-24 176.5 13.1 162 114-281 5-167 (271)
49 1ksh_A ARF-like protein 2; sma 99.8 7.4E-20 2.5E-24 162.6 14.9 155 113-280 19-180 (186)
50 1zd9_A ADP-ribosylation factor 99.8 1.5E-19 5.1E-24 161.5 16.8 152 116-280 27-185 (188)
51 3tw8_B RAS-related protein RAB 99.8 2.1E-20 7.2E-25 164.5 10.9 151 116-279 14-170 (181)
52 2h57_A ADP-ribosylation factor 99.8 9.5E-20 3.3E-24 162.8 15.3 153 116-279 26-186 (190)
53 2b6h_A ADP-ribosylation factor 99.8 2.1E-19 7.2E-24 161.4 17.6 154 113-279 30-190 (192)
54 2g6b_A RAS-related protein RAB 99.8 2.9E-20 9.9E-25 163.9 11.5 153 116-279 15-173 (180)
55 1g16_A RAS-related protein SEC 99.8 4.4E-20 1.5E-24 160.8 12.5 152 116-279 8-164 (170)
56 4dsu_A GTPase KRAS, isoform 2B 99.8 7.2E-20 2.5E-24 162.4 13.8 152 116-279 9-165 (189)
57 3zvr_A Dynamin-1; hydrolase, D 99.8 8.4E-21 2.9E-25 201.8 9.0 208 115-328 55-336 (772)
58 3tkl_A RAS-related protein RAB 99.8 9.7E-20 3.3E-24 162.9 14.5 153 116-279 21-178 (196)
59 1wms_A RAB-9, RAB9, RAS-relate 99.8 1.4E-19 4.7E-24 159.1 15.1 153 116-279 12-173 (177)
60 3b1v_A Ferrous iron uptake tra 99.8 1.2E-20 4E-25 179.6 8.6 157 116-280 8-164 (272)
61 2y8e_A RAB-protein 6, GH09086P 99.8 5.7E-20 1.9E-24 161.5 12.3 152 116-279 19-176 (179)
62 1mh1_A RAC1; GTP-binding, GTPa 99.8 5.8E-20 2E-24 162.6 12.4 156 116-282 10-182 (186)
63 1moz_A ARL1, ADP-ribosylation 99.8 1.3E-19 4.6E-24 160.2 14.5 153 113-278 19-178 (183)
64 4djt_A GTP-binding nuclear pro 99.8 5E-20 1.7E-24 168.2 11.8 159 116-284 16-179 (218)
65 2x2e_A Dynamin-1; nitration, h 99.8 1.8E-21 6E-26 192.1 2.1 207 116-327 36-315 (353)
66 3clv_A RAB5 protein, putative; 99.8 2.5E-19 8.5E-24 160.4 15.7 152 113-278 8-202 (208)
67 3reg_A RHO-like small GTPase; 99.8 6.1E-20 2.1E-24 164.6 11.5 153 116-280 28-188 (194)
68 4dkx_A RAS-related protein RAB 99.8 5.9E-20 2E-24 168.9 11.5 157 113-280 14-176 (216)
69 1z0f_A RAB14, member RAS oncog 99.8 1.2E-19 4E-24 159.5 12.9 153 116-279 20-177 (179)
70 2fn4_A P23, RAS-related protei 99.8 1.1E-19 3.6E-24 160.0 12.7 152 116-279 14-171 (181)
71 4gzl_A RAS-related C3 botulinu 99.8 1.1E-19 3.8E-24 164.8 13.1 155 113-278 31-203 (204)
72 3cph_A RAS-related protein SEC 99.8 1E-19 3.5E-24 165.1 12.7 155 113-279 21-181 (213)
73 2bme_A RAB4A, RAS-related prot 99.8 1.3E-19 4.5E-24 160.6 13.0 152 116-279 15-172 (186)
74 2oil_A CATX-8, RAS-related pro 99.8 9.5E-20 3.2E-24 163.0 12.0 152 116-278 30-186 (193)
75 2il1_A RAB12; G-protein, GDP, 99.8 1.7E-19 5.9E-24 161.8 13.6 151 116-278 31-188 (192)
76 2x77_A ADP-ribosylation factor 99.8 1.4E-19 4.7E-24 161.5 12.9 154 113-279 23-183 (189)
77 1vg8_A RAS-related protein RAB 99.8 1.3E-19 4.5E-24 163.6 12.7 154 116-279 13-174 (207)
78 3j2k_7 ERF3, eukaryotic polype 99.8 1.9E-19 6.3E-24 182.6 15.1 146 116-272 22-217 (439)
79 2j1l_A RHO-related GTP-binding 99.8 1.6E-19 5.5E-24 164.9 13.3 153 116-279 39-208 (214)
80 2wjg_A FEOB, ferrous iron tran 99.8 7.1E-20 2.4E-24 162.9 10.4 160 116-282 12-171 (188)
81 1u8z_A RAS-related protein RAL 99.8 1.2E-19 4.1E-24 157.3 11.6 152 114-278 6-165 (168)
82 1kao_A RAP2A; GTP-binding prot 99.8 5.7E-20 1.9E-24 159.2 9.5 150 116-278 8-164 (167)
83 2hup_A RAS-related protein RAB 99.8 2.3E-19 7.7E-24 162.4 13.8 153 116-279 34-192 (201)
84 1zbd_A Rabphilin-3A; G protein 99.8 2.2E-19 7.7E-24 161.9 13.7 152 116-278 13-169 (203)
85 2gf9_A RAS-related protein RAB 99.8 1.3E-19 4.4E-24 161.7 12.0 152 116-278 27-183 (189)
86 2atx_A Small GTP binding prote 99.8 1.8E-19 6E-24 161.4 12.8 151 116-278 23-191 (194)
87 3kkq_A RAS-related protein M-R 99.8 4.8E-19 1.6E-23 156.8 15.2 150 116-278 23-180 (183)
88 1lnz_A SPO0B-associated GTP-bi 99.8 4.1E-20 1.4E-24 181.2 9.0 166 116-288 163-340 (342)
89 3t5g_A GTP-binding protein RHE 99.8 8.4E-20 2.9E-24 161.4 10.1 153 116-281 11-170 (181)
90 3qq5_A Small GTP-binding prote 99.8 1.5E-20 5.2E-25 189.1 5.9 161 113-281 35-197 (423)
91 2fu5_C RAS-related protein RAB 99.8 5.9E-20 2E-24 162.6 8.7 151 116-278 13-169 (183)
92 3dz8_A RAS-related protein RAB 99.8 7E-20 2.4E-24 163.9 9.0 154 114-278 25-184 (191)
93 2erx_A GTP-binding protein DI- 99.8 2.1E-19 7.3E-24 156.5 11.7 153 116-280 8-167 (172)
94 2q3h_A RAS homolog gene family 99.8 1.7E-19 5.7E-24 162.5 11.3 154 113-278 21-193 (201)
95 2o52_A RAS-related protein RAB 99.8 1.6E-19 5.5E-24 163.1 11.1 152 116-279 30-187 (200)
96 2e87_A Hypothetical protein PH 99.8 7.3E-19 2.5E-23 173.6 16.7 160 116-279 172-335 (357)
97 2ce2_X GTPase HRAS; signaling 99.8 4.4E-19 1.5E-23 153.2 13.3 150 116-278 8-163 (166)
98 3tr5_A RF-3, peptide chain rel 99.8 1.6E-20 5.5E-25 194.1 4.9 111 116-237 18-149 (528)
99 2fh5_B SR-beta, signal recogni 99.8 4.1E-19 1.4E-23 161.7 13.7 153 114-278 9-214 (214)
100 2ew1_A RAS-related protein RAB 99.8 2.4E-19 8.3E-24 162.6 12.1 152 116-279 31-188 (201)
101 3bwd_D RAC-like GTP-binding pr 99.8 5.4E-20 1.8E-24 162.4 7.5 156 113-279 9-180 (182)
102 3lxw_A GTPase IMAP family memb 99.8 1.4E-19 4.9E-24 169.6 10.7 172 116-290 26-219 (247)
103 2j0v_A RAC-like GTP-binding pr 99.8 1.7E-19 5.9E-24 163.9 10.8 154 116-280 14-180 (212)
104 3q85_A GTP-binding protein REM 99.8 2.5E-19 8.5E-24 156.2 11.2 152 116-278 7-165 (169)
105 2fv8_A H6, RHO-related GTP-bin 99.8 3E-19 1E-23 162.1 12.1 156 113-279 26-199 (207)
106 2a9k_A RAS-related protein RAL 99.8 3.7E-19 1.3E-23 157.4 12.4 152 114-278 20-179 (187)
107 2hxs_A RAB-26, RAS-related pro 99.8 2.1E-19 7.2E-24 158.0 10.8 155 116-282 11-175 (178)
108 2gco_A H9, RHO-related GTP-bin 99.8 3.5E-19 1.2E-23 160.9 12.4 152 116-278 30-198 (201)
109 1z08_A RAS-related protein RAB 99.8 3E-19 1E-23 155.7 11.5 152 116-279 11-168 (170)
110 2qtf_A Protein HFLX, GTP-bindi 99.8 2.9E-19 9.8E-24 176.8 12.8 165 116-282 184-356 (364)
111 3q3j_B RHO-related GTP-binding 99.8 1.4E-19 4.7E-24 165.6 9.7 157 113-281 28-204 (214)
112 3o47_A ADP-ribosylation factor 99.8 7.6E-19 2.6E-23 171.6 15.4 154 114-280 167-327 (329)
113 2a5j_A RAS-related protein RAB 99.8 3E-19 1E-23 159.7 11.6 152 116-278 26-182 (191)
114 1z2a_A RAS-related protein RAB 99.8 3.1E-19 1.1E-23 155.1 11.3 150 116-278 10-165 (168)
115 3bc1_A RAS-related protein RAB 99.8 1.2E-18 4E-23 154.9 15.3 151 116-278 16-183 (195)
116 2p5s_A RAS and EF-hand domain 99.8 3.8E-19 1.3E-23 160.3 12.1 156 113-279 29-196 (199)
117 2iwr_A Centaurin gamma 1; ANK 99.8 4.5E-19 1.5E-23 156.2 12.3 148 113-278 8-167 (178)
118 2bcg_Y Protein YP2, GTP-bindin 99.8 3.5E-19 1.2E-23 161.1 11.8 152 116-279 13-170 (206)
119 3t1o_A Gliding protein MGLA; G 99.8 1.8E-19 6.1E-24 160.9 9.7 153 116-278 19-190 (198)
120 2gf0_A GTP-binding protein DI- 99.8 1.1E-18 3.8E-23 156.3 14.8 156 113-281 9-172 (199)
121 2bov_A RAla, RAS-related prote 99.8 1.4E-18 4.7E-23 156.6 15.5 151 116-279 19-176 (206)
122 1ky3_A GTP-binding protein YPT 99.8 3.7E-19 1.3E-23 156.7 11.4 152 116-278 13-176 (182)
123 3oes_A GTPase rhebl1; small GT 99.8 1.9E-19 6.5E-24 162.5 9.0 151 116-279 29-186 (201)
124 1z06_A RAS-related protein RAB 99.8 9.7E-19 3.3E-23 156.0 13.4 154 116-279 25-187 (189)
125 3con_A GTPase NRAS; structural 99.8 1.2E-18 4.1E-23 155.3 13.9 151 116-279 26-182 (190)
126 2f7s_A C25KG, RAS-related prot 99.8 7.2E-19 2.5E-23 160.3 12.4 150 116-278 30-197 (217)
127 2yc2_C IFT27, small RAB-relate 99.8 3E-19 1E-23 161.0 9.6 153 116-279 25-191 (208)
128 2cxx_A Probable GTP-binding pr 99.8 2.6E-18 8.9E-23 152.6 14.7 155 116-279 6-183 (190)
129 2atv_A RERG, RAS-like estrogen 99.8 1.4E-18 4.7E-23 156.1 13.0 152 113-278 29-189 (196)
130 1wb1_A Translation elongation 99.8 8.9E-19 3E-23 179.5 13.3 153 116-279 24-188 (482)
131 1f60_A Elongation factor EEF1A 99.8 2.6E-20 8.8E-25 189.9 1.8 224 116-357 12-329 (458)
132 3cbq_A GTP-binding protein REM 99.8 8.9E-19 3E-23 157.9 11.2 152 116-279 28-187 (195)
133 3cpj_B GTP-binding protein YPT 99.8 4.7E-19 1.6E-23 162.8 9.6 153 116-280 18-176 (223)
134 3lvq_E ARF-GAP with SH3 domain 99.8 1.9E-18 6.6E-23 177.7 15.0 154 116-282 327-486 (497)
135 3llu_A RAS-related GTP-binding 99.8 3.2E-18 1.1E-22 153.9 14.5 159 113-278 21-195 (196)
136 1m7b_A RND3/RHOE small GTP-bin 99.8 4.4E-19 1.5E-23 157.7 8.6 151 116-278 12-181 (184)
137 3sjy_A Translation initiation 99.8 2.6E-18 9E-23 172.3 15.2 159 113-281 9-193 (403)
138 3ihw_A Centg3; RAS, centaurin, 99.8 2.3E-18 7.8E-23 153.6 13.0 145 116-278 25-178 (184)
139 3r7w_A Gtpase1, GTP-binding pr 99.8 3.9E-18 1.3E-22 165.0 15.5 161 113-278 4-179 (307)
140 2g3y_A GTP-binding protein GEM 99.8 9.4E-19 3.2E-23 160.3 10.3 155 114-278 39-201 (211)
141 3t5d_A Septin-7; GTP-binding p 99.8 4.8E-18 1.6E-22 161.5 14.5 160 116-279 13-203 (274)
142 3mca_A HBS1, elongation factor 99.8 1.2E-19 4.1E-24 190.2 2.8 153 116-279 182-396 (592)
143 3p26_A Elongation factor 1 alp 99.7 5E-19 1.7E-23 181.6 6.2 147 113-269 34-227 (483)
144 2cjw_A GTP-binding protein GEM 99.7 2E-18 7E-23 155.1 9.4 155 114-278 8-170 (192)
145 1gwn_A RHO-related GTP-binding 99.7 1.5E-18 5E-23 157.9 8.5 151 116-278 33-202 (205)
146 3l0i_B RAS-related protein RAB 99.7 3.6E-20 1.2E-24 167.0 -2.6 154 116-280 38-196 (199)
147 3izy_P Translation initiation 99.7 1.4E-19 4.8E-24 186.7 1.4 153 116-280 9-168 (537)
148 2zej_A Dardarin, leucine-rich 99.7 7.6E-18 2.6E-22 149.9 12.3 155 116-280 7-178 (184)
149 3c5c_A RAS-like protein 12; GD 99.7 2.4E-18 8.3E-23 153.6 9.1 149 116-278 26-184 (187)
150 1kk1_A EIF2gamma; initiation o 99.7 1.6E-17 5.6E-22 166.9 16.0 156 116-281 15-201 (410)
151 3cb4_D GTP-binding protein LEP 99.7 3.6E-18 1.2E-22 178.6 11.4 190 116-331 9-220 (599)
152 2elf_A Protein translation elo 99.7 6.6E-18 2.3E-22 167.4 12.6 142 116-279 26-179 (370)
153 1s0u_A EIF-2-gamma, translatio 99.7 2.3E-17 7.8E-22 165.7 16.0 159 113-281 9-199 (408)
154 1zo1_I IF2, translation initia 99.7 2.3E-20 7.8E-25 191.0 -6.2 246 116-390 9-262 (501)
155 3th5_A RAS-related C3 botulinu 99.6 1.6E-19 5.4E-24 163.3 0.0 152 116-278 35-203 (204)
156 2c78_A Elongation factor TU-A; 99.7 8E-18 2.7E-22 168.9 12.0 155 116-281 16-213 (405)
157 1d2e_A Elongation factor TU (E 99.7 3E-17 1E-21 164.3 15.6 154 116-280 8-195 (397)
158 2wkq_A NPH1-1, RAS-related C3 99.7 9.3E-18 3.2E-22 162.6 11.4 156 113-279 156-329 (332)
159 2www_A Methylmalonic aciduria 99.7 5E-19 1.7E-23 174.2 2.4 181 116-317 79-316 (349)
160 3lxx_A GTPase IMAP family memb 99.7 1.9E-17 6.5E-22 153.9 13.0 162 116-280 34-214 (239)
161 1pui_A ENGB, probable GTP-bind 99.7 8.3E-17 2.8E-21 145.7 16.5 164 113-282 27-201 (210)
162 2ywe_A GTP-binding protein LEP 99.7 2.2E-17 7.5E-22 172.4 14.3 191 116-332 11-223 (600)
163 3vqt_A RF-3, peptide chain rel 99.7 7.4E-18 2.5E-22 175.0 9.3 114 113-237 32-167 (548)
164 1zun_B Sulfate adenylate trans 99.7 1.1E-16 3.8E-21 162.0 15.5 143 116-269 29-213 (434)
165 3p32_A Probable GTPase RV1496/ 99.7 5.3E-18 1.8E-22 167.3 4.7 178 116-313 84-317 (355)
166 2rdo_7 EF-G, elongation factor 99.7 2.2E-16 7.6E-21 168.5 16.2 110 116-236 15-148 (704)
167 2h5e_A Peptide chain release f 99.7 2.8E-16 9.5E-21 162.5 16.4 111 116-237 18-149 (529)
168 4a9a_A Ribosome-interacting GT 99.7 5.8E-17 2E-21 160.1 10.6 117 114-234 74-194 (376)
169 1jny_A EF-1-alpha, elongation 99.7 1E-16 3.5E-21 162.3 12.4 143 116-269 11-202 (435)
170 1g7s_A Translation initiation 99.7 4.5E-17 1.5E-21 170.4 10.0 151 116-279 10-217 (594)
171 1dar_A EF-G, elongation factor 99.7 2E-16 6.8E-21 168.7 15.1 111 116-237 17-144 (691)
172 2j69_A Bacterial dynamin-like 99.7 6.6E-17 2.3E-21 172.5 10.9 159 113-279 70-324 (695)
173 2p67_A LAO/AO transport system 99.7 3.3E-17 1.1E-21 160.7 6.8 178 116-314 61-295 (341)
174 3dpu_A RAB family protein; roc 99.7 7.2E-17 2.4E-21 167.6 9.3 157 114-283 43-211 (535)
175 3avx_A Elongation factor TS, e 99.7 4.3E-16 1.5E-20 170.5 14.5 154 116-280 301-486 (1289)
176 2xex_A Elongation factor G; GT 99.6 4.6E-16 1.6E-20 165.9 13.0 111 116-237 15-142 (693)
177 2f9l_A RAB11B, member RAS onco 99.6 1E-15 3.4E-20 137.9 12.1 151 116-278 10-166 (199)
178 2dy1_A Elongation factor G; tr 99.6 2.3E-15 8E-20 159.8 15.2 109 116-235 14-139 (665)
179 1r5b_A Eukaryotic peptide chai 99.6 9.8E-16 3.3E-20 156.4 11.5 145 116-271 48-243 (467)
180 3c5h_A Glucocorticoid receptor 99.6 1.2E-15 3.9E-20 143.6 10.5 87 191-278 162-253 (255)
181 1udx_A The GTP-binding protein 99.6 3E-15 1E-19 150.1 13.1 159 116-282 162-327 (416)
182 2qm8_A GTPase/ATPase; G protei 99.6 1.8E-16 6.2E-21 155.2 3.6 179 116-315 60-296 (337)
183 1h65_A Chloroplast outer envel 99.6 4.6E-15 1.6E-19 140.5 12.5 121 116-238 44-170 (270)
184 3j25_A Tetracycline resistance 99.6 4.2E-16 1.4E-20 164.8 5.6 156 115-281 6-240 (638)
185 1oix_A RAS-related protein RAB 99.6 8.7E-15 3E-19 131.1 11.3 150 116-277 34-189 (191)
186 3r7w_B Gtpase2, GTP-binding pr 99.6 1.4E-14 4.8E-19 140.1 13.0 155 116-279 4-173 (331)
187 1nrj_B SR-beta, signal recogni 99.6 3.9E-14 1.3E-18 128.9 14.6 140 114-266 14-170 (218)
188 2qag_A Septin-2, protein NEDD5 99.6 1.7E-14 5.7E-19 142.5 12.2 160 116-279 42-236 (361)
189 3t34_A Dynamin-related protein 99.6 5.6E-15 1.9E-19 145.8 8.7 114 157-273 134-254 (360)
190 3def_A T7I23.11 protein; chlor 99.6 1.3E-14 4.4E-19 136.9 10.8 119 116-236 41-165 (262)
191 2v3c_C SRP54, signal recogniti 99.5 4.5E-17 1.6E-21 164.2 -7.9 240 116-375 104-414 (432)
192 4fn5_A EF-G 1, elongation fact 99.5 4.6E-14 1.6E-18 151.0 14.2 110 116-236 18-151 (709)
193 1yrb_A ATP(GTP)binding protein 99.5 1.2E-14 4.1E-19 136.3 8.1 159 116-280 19-257 (262)
194 2qag_C Septin-7; cell cycle, c 99.5 4.3E-14 1.5E-18 141.8 9.9 207 116-364 36-283 (418)
195 2wsm_A Hydrogenase expression/ 99.5 1.1E-14 3.8E-19 132.9 5.2 146 116-279 35-213 (221)
196 2ged_A SR-beta, signal recogni 99.5 3.2E-14 1.1E-18 126.8 8.0 120 114-245 50-179 (193)
197 1jal_A YCHF protein; nucleotid 99.5 2.5E-13 8.5E-18 133.5 13.4 83 116-203 7-108 (363)
198 2j37_W Signal recognition part 99.5 6.6E-16 2.3E-20 158.1 -6.8 252 116-375 106-422 (504)
199 2dby_A GTP-binding protein; GD 99.4 3.8E-13 1.3E-17 132.8 9.8 83 116-203 6-111 (368)
200 2ohf_A Protein OLA1, GTP-bindi 99.4 1.1E-13 3.9E-18 137.2 3.1 185 116-323 27-233 (396)
201 1n0u_A EF-2, elongation factor 99.4 2.1E-13 7.3E-18 148.2 5.3 109 116-235 24-163 (842)
202 2qnr_A Septin-2, protein NEDD5 99.3 3.5E-12 1.2E-16 122.7 11.5 157 116-278 23-212 (301)
203 3ec1_A YQEH GTPase; atnos1, at 99.3 7.8E-14 2.7E-18 138.1 -4.3 146 115-267 166-318 (369)
204 2hf9_A Probable hydrogenase ni 99.3 9.1E-12 3.1E-16 113.8 9.0 57 222-278 164-222 (226)
205 3h2y_A GTPase family protein; 99.3 1.7E-13 5.7E-18 135.7 -2.9 140 116-262 165-312 (368)
206 1tq4_A IIGP1, interferon-induc 99.3 4.3E-11 1.5E-15 119.7 13.8 184 116-309 74-288 (413)
207 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 1.7E-13 5.7E-18 136.2 -5.3 177 116-323 25-235 (392)
208 2qag_B Septin-6, protein NEDD5 99.1 9.5E-10 3.3E-14 110.0 13.7 143 116-261 47-217 (427)
209 1u0l_A Probable GTPase ENGC; p 98.9 2.2E-09 7.6E-14 103.1 9.7 103 160-276 64-169 (301)
210 3sop_A Neuronal-specific septi 98.9 6.1E-09 2.1E-13 98.4 11.0 125 116-243 7-161 (270)
211 1cip_A Protein (guanine nucleo 98.8 2.4E-09 8.3E-14 105.0 5.9 118 152-278 186-342 (353)
212 1puj_A YLQF, conserved hypothe 98.8 5.5E-10 1.9E-14 106.3 0.6 54 116-172 125-178 (282)
213 1zcb_A G alpha I/13; GTP-bindi 98.7 6.8E-09 2.3E-13 102.1 5.6 117 153-278 195-351 (362)
214 1puj_A YLQF, conserved hypothe 98.7 3.4E-08 1.2E-12 93.9 9.8 102 164-279 4-105 (282)
215 1azs_C GS-alpha; complex (lyas 98.6 4E-08 1.4E-12 97.7 7.9 117 153-278 211-383 (402)
216 1f5n_A Interferon-induced guan 98.6 2.2E-08 7.5E-13 104.1 5.7 54 116-171 43-103 (592)
217 2xtz_A Guanine nucleotide-bind 98.6 2.4E-08 8.3E-13 97.9 5.7 113 157-278 181-343 (354)
218 3dm5_A SRP54, signal recogniti 98.6 1.8E-07 6E-12 94.0 10.5 142 116-270 105-281 (443)
219 3l82_B F-box only protein 4; T 98.6 3E-07 1E-11 82.8 10.4 96 185-280 119-223 (227)
220 2xxa_A Signal recognition part 98.6 1.7E-09 5.7E-14 109.0 -4.8 237 116-372 105-412 (433)
221 2yv5_A YJEQ protein; hydrolase 98.5 1.6E-07 5.5E-12 90.1 9.1 85 187-276 75-165 (302)
222 4fid_A G protein alpha subunit 98.5 7.6E-08 2.6E-12 93.6 6.4 77 151-236 153-242 (340)
223 3ohm_A Guanine nucleotide-bind 98.5 1.1E-07 3.8E-12 92.0 7.4 119 151-278 159-316 (327)
224 3h2y_A GTPase family protein; 98.5 2.7E-07 9.1E-12 91.0 8.4 91 185-279 63-159 (368)
225 3ec1_A YQEH GTPase; atnos1, at 98.4 4.6E-07 1.6E-11 89.4 9.1 90 186-279 66-161 (369)
226 3cnl_A YLQF, putative uncharac 98.4 4.9E-08 1.7E-12 91.8 1.7 53 116-171 104-156 (262)
227 3cnl_A YLQF, putative uncharac 98.4 2.1E-07 7.2E-12 87.4 4.5 85 184-277 14-98 (262)
228 3kl4_A SRP54, signal recogniti 98.3 8.9E-07 3E-11 88.8 8.2 140 116-268 102-278 (433)
229 3l2o_B F-box only protein 4; s 98.3 1.7E-06 5.9E-11 81.5 8.5 96 185-280 204-308 (312)
230 3szr_A Interferon-induced GTP- 98.1 7E-06 2.4E-10 86.1 8.7 78 159-238 147-230 (608)
231 1j8m_F SRP54, signal recogniti 98.0 8.9E-06 3E-10 77.7 8.1 141 116-270 103-281 (297)
232 3q5d_A Atlastin-1; G protein, 98.0 8.3E-06 2.8E-10 82.1 8.0 55 116-171 72-152 (447)
233 1t9h_A YLOQ, probable GTPase E 97.8 7.8E-06 2.7E-10 78.4 3.8 84 188-274 83-171 (307)
234 3e70_C DPA, signal recognition 97.5 0.00026 9E-09 68.4 9.1 99 159-270 212-310 (328)
235 2rcn_A Probable GTPase ENGC; Y 97.4 0.00032 1.1E-08 68.4 8.6 83 188-274 127-213 (358)
236 1zu4_A FTSY; GTPase, signal re 97.2 0.0017 5.8E-08 62.4 10.9 73 157-236 190-268 (320)
237 2yhs_A FTSY, cell division pro 97.2 0.0011 3.6E-08 67.4 9.1 144 116-270 298-480 (503)
238 1rj9_A FTSY, signal recognitio 97.1 0.0015 5.1E-08 62.3 9.4 74 159-236 185-261 (304)
239 2px0_A Flagellar biosynthesis 97.1 0.00055 1.9E-08 65.1 6.1 112 116-236 110-253 (296)
240 1t9h_A YLOQ, probable GTPase E 97.0 0.00012 4.2E-09 70.0 0.6 52 116-171 178-236 (307)
241 4dzz_A Plasmid partitioning pr 97.0 0.00061 2.1E-08 60.3 4.9 106 118-235 9-143 (206)
242 2rcn_A Probable GTPase ENGC; Y 96.8 0.00044 1.5E-08 67.5 2.3 52 116-170 220-279 (358)
243 2ffh_A Protein (FFH); SRP54, s 96.7 0.0029 1E-07 63.1 7.6 72 157-236 179-251 (425)
244 2yv5_A YJEQ protein; hydrolase 96.7 0.0014 4.6E-08 62.5 4.7 51 116-170 170-227 (302)
245 1vma_A Cell division protein F 96.6 0.0053 1.8E-07 58.6 8.6 101 157-269 185-290 (306)
246 2og2_A Putative signal recogni 96.5 0.0082 2.8E-07 58.5 9.2 74 159-236 241-317 (359)
247 3b9q_A Chloroplast SRP recepto 96.5 0.0066 2.3E-07 57.7 8.3 74 159-236 184-260 (302)
248 1u0l_A Probable GTPase ENGC; p 96.4 0.0015 5.3E-08 62.1 3.1 22 116-137 174-195 (301)
249 1nij_A Hypothetical protein YJ 96.2 0.015 5.2E-07 55.5 9.3 19 116-134 9-27 (318)
250 3cwq_A Para family chromosome 96.1 0.0033 1.1E-07 56.3 3.4 107 117-236 7-134 (209)
251 1ls1_A Signal recognition part 95.8 0.018 6.2E-07 54.5 7.4 72 157-236 179-251 (295)
252 3end_A Light-independent proto 95.7 0.014 4.7E-07 55.2 6.5 67 158-234 156-225 (307)
253 3ney_A 55 kDa erythrocyte memb 95.7 0.0016 5.5E-08 58.1 -0.3 51 116-168 24-75 (197)
254 4b4t_L 26S protease subunit RP 95.0 0.12 4.3E-06 51.4 10.9 25 110-134 213-238 (437)
255 1kgd_A CASK, peripheral plasma 94.8 0.014 4.8E-07 50.7 2.9 19 116-134 10-28 (180)
256 4b4t_J 26S protease regulatory 94.6 0.22 7.5E-06 49.1 11.2 25 110-134 180-205 (405)
257 1lvg_A Guanylate kinase, GMP k 94.6 0.014 4.7E-07 51.7 2.3 19 116-134 9-27 (198)
258 1bif_A 6-phosphofructo-2-kinas 94.5 0.0029 1E-07 63.9 -2.5 96 116-217 44-146 (469)
259 4ido_A Atlastin-1; GTPase, GTP 94.4 0.1 3.5E-06 52.2 8.5 17 116-132 72-88 (457)
260 1zp6_A Hypothetical protein AT 94.3 0.027 9.1E-07 48.9 3.6 19 116-134 14-32 (191)
261 1znw_A Guanylate kinase, GMP k 94.2 0.021 7.3E-07 50.6 2.8 20 116-135 25-44 (207)
262 1ye8_A Protein THEP1, hypothet 94.2 0.017 6E-07 50.3 2.0 20 116-135 5-24 (178)
263 3tau_A Guanylate kinase, GMP k 94.1 0.027 9.4E-07 50.0 3.3 20 116-135 13-32 (208)
264 3tr0_A Guanylate kinase, GMP k 93.9 0.028 9.6E-07 49.3 2.9 19 116-134 12-30 (205)
265 1ex7_A Guanylate kinase; subst 93.8 0.025 8.4E-07 49.8 2.4 35 115-149 5-40 (186)
266 4b4t_H 26S protease regulatory 93.8 0.21 7.2E-06 50.1 9.3 25 110-134 241-266 (467)
267 1z6g_A Guanylate kinase; struc 93.8 0.027 9.1E-07 50.6 2.6 19 116-134 28-46 (218)
268 3c8u_A Fructokinase; YP_612366 93.8 0.03 1E-06 49.7 2.9 23 113-135 23-46 (208)
269 3tif_A Uncharacterized ABC tra 93.7 0.035 1.2E-06 50.6 3.3 24 112-135 31-55 (235)
270 1s96_A Guanylate kinase, GMP k 93.7 0.03 1E-06 50.5 2.7 20 116-135 21-40 (219)
271 2pcj_A ABC transporter, lipopr 93.4 0.034 1.2E-06 50.3 2.6 24 112-135 30-54 (224)
272 1jbk_A CLPB protein; beta barr 93.4 0.084 2.9E-06 44.9 5.0 22 113-134 45-66 (195)
273 3a00_A Guanylate kinase, GMP k 93.4 0.027 9.4E-07 49.0 1.9 20 116-135 6-25 (186)
274 4b4t_K 26S protease regulatory 93.4 0.097 3.3E-06 52.1 6.0 25 110-134 204-229 (428)
275 2cbz_A Multidrug resistance-as 93.4 0.044 1.5E-06 50.0 3.3 24 112-135 31-55 (237)
276 1mv5_A LMRA, multidrug resista 93.3 0.047 1.6E-06 50.0 3.4 25 111-135 27-52 (243)
277 4b4t_I 26S protease regulatory 93.2 0.29 1E-05 48.5 9.2 25 110-134 214-239 (437)
278 1b0u_A Histidine permease; ABC 93.2 0.047 1.6E-06 50.6 3.3 24 112-135 32-56 (262)
279 2qz4_A Paraplegin; AAA+, SPG7, 93.2 0.61 2.1E-05 42.1 10.8 21 113-133 40-61 (262)
280 1xjc_A MOBB protein homolog; s 93.1 0.16 5.3E-06 43.9 6.2 18 116-133 9-26 (169)
281 1htw_A HI0065; nucleotide-bind 93.1 0.048 1.6E-06 46.5 2.9 24 112-135 33-57 (158)
282 2olj_A Amino acid ABC transpor 93.0 0.053 1.8E-06 50.4 3.3 24 112-135 50-74 (263)
283 1vpl_A ABC transporter, ATP-bi 93.0 0.054 1.8E-06 50.1 3.3 24 112-135 41-65 (256)
284 4gp7_A Metallophosphoesterase; 93.0 0.041 1.4E-06 47.3 2.3 18 116-133 14-31 (171)
285 2v9p_A Replication protein E1; 93.0 0.045 1.5E-06 52.0 2.8 25 110-134 124-149 (305)
286 2ghi_A Transport protein; mult 92.9 0.055 1.9E-06 50.1 3.3 23 112-134 46-69 (260)
287 2zu0_C Probable ATP-dependent 92.9 0.057 2E-06 50.2 3.3 24 111-134 45-69 (267)
288 2onk_A Molybdate/tungstate ABC 92.8 0.045 1.5E-06 50.1 2.5 23 113-135 25-48 (240)
289 2ixe_A Antigen peptide transpo 92.8 0.058 2E-06 50.3 3.3 25 111-135 44-69 (271)
290 3t15_A Ribulose bisphosphate c 92.8 0.18 6.3E-06 47.2 6.7 21 113-133 37-58 (293)
291 2yz2_A Putative ABC transporte 92.7 0.061 2.1E-06 50.0 3.3 25 111-135 32-57 (266)
292 1g6h_A High-affinity branched- 92.7 0.046 1.6E-06 50.5 2.4 24 112-135 33-57 (257)
293 1sgw_A Putative ABC transporte 92.7 0.048 1.6E-06 49.0 2.4 24 112-135 35-59 (214)
294 4b4t_M 26S protease regulatory 92.7 0.12 4.1E-06 51.5 5.5 25 110-134 213-238 (434)
295 3asz_A Uridine kinase; cytidin 92.6 0.062 2.1E-06 47.4 3.1 19 116-134 11-29 (211)
296 2j41_A Guanylate kinase; GMP, 92.6 0.059 2E-06 47.2 2.9 20 116-135 11-30 (207)
297 3gfo_A Cobalt import ATP-bindi 92.5 0.051 1.7E-06 50.8 2.4 24 112-135 34-58 (275)
298 4g1u_C Hemin import ATP-bindin 92.5 0.052 1.8E-06 50.5 2.4 24 112-135 37-61 (266)
299 2pze_A Cystic fibrosis transme 92.5 0.053 1.8E-06 49.2 2.4 24 112-135 34-58 (229)
300 2eyu_A Twitching motility prot 92.4 0.063 2.1E-06 49.8 2.9 19 116-134 30-48 (261)
301 2ff7_A Alpha-hemolysin translo 92.4 0.055 1.9E-06 49.7 2.4 24 112-135 35-59 (247)
302 1ji0_A ABC transporter; ATP bi 92.4 0.055 1.9E-06 49.4 2.4 20 116-135 37-56 (240)
303 2d2e_A SUFC protein; ABC-ATPas 92.3 0.056 1.9E-06 49.7 2.5 23 112-134 29-52 (250)
304 2x8a_A Nuclear valosin-contain 92.3 0.061 2.1E-06 50.1 2.8 23 112-134 44-67 (274)
305 2qi9_C Vitamin B12 import ATP- 92.3 0.056 1.9E-06 49.8 2.4 24 112-135 26-50 (249)
306 3ec2_A DNA replication protein 92.2 0.052 1.8E-06 46.7 2.0 23 113-135 39-62 (180)
307 3h4m_A Proteasome-activating n 92.2 0.38 1.3E-05 44.3 8.0 23 112-134 51-74 (285)
308 2bdt_A BH3686; alpha-beta prot 92.2 0.054 1.8E-06 47.0 2.0 18 116-133 7-24 (189)
309 4eun_A Thermoresistant glucoki 92.1 0.07 2.4E-06 46.9 2.7 19 116-134 34-52 (200)
310 3b85_A Phosphate starvation-in 92.1 0.048 1.7E-06 48.7 1.6 19 116-134 27-45 (208)
311 3k9g_A PF-32 protein; ssgcid, 92.0 0.35 1.2E-05 44.2 7.5 66 158-234 144-209 (267)
312 2bbs_A Cystic fibrosis transme 92.0 0.09 3.1E-06 49.5 3.5 25 111-135 63-88 (290)
313 2ihy_A ABC transporter, ATP-bi 92.0 0.064 2.2E-06 50.2 2.4 24 112-135 47-71 (279)
314 4a74_A DNA repair and recombin 92.0 0.062 2.1E-06 47.8 2.2 19 116-134 30-48 (231)
315 2nq2_C Hypothetical ABC transp 91.9 0.065 2.2E-06 49.4 2.4 24 112-135 31-55 (253)
316 2qor_A Guanylate kinase; phosp 91.9 0.096 3.3E-06 46.1 3.4 19 116-134 17-35 (204)
317 3lnc_A Guanylate kinase, GMP k 91.8 0.052 1.8E-06 48.9 1.5 20 116-135 32-52 (231)
318 3b9p_A CG5977-PA, isoform A; A 91.8 0.25 8.4E-06 46.0 6.3 22 112-133 54-76 (297)
319 1kag_A SKI, shikimate kinase I 91.8 0.064 2.2E-06 45.6 2.0 19 116-134 9-27 (173)
320 1ixz_A ATP-dependent metallopr 91.7 0.083 2.8E-06 48.2 2.9 22 113-134 50-72 (254)
321 2i3b_A HCR-ntpase, human cance 91.7 0.062 2.1E-06 47.3 1.9 19 116-134 6-24 (189)
322 1np6_A Molybdopterin-guanine d 91.7 0.067 2.3E-06 46.5 2.0 19 116-134 11-29 (174)
323 1knq_A Gluconate kinase; ALFA/ 91.6 0.097 3.3E-06 44.6 3.0 18 116-133 13-30 (175)
324 3nh6_A ATP-binding cassette SU 91.6 0.061 2.1E-06 51.1 1.8 26 110-135 78-104 (306)
325 3fvq_A Fe(3+) IONS import ATP- 91.5 0.11 3.8E-06 50.5 3.5 24 112-135 30-54 (359)
326 2kjq_A DNAA-related protein; s 91.4 0.075 2.6E-06 44.7 2.0 22 113-134 37-59 (149)
327 2bbw_A Adenylate kinase 4, AK4 91.4 0.083 2.8E-06 48.1 2.5 20 116-135 32-54 (246)
328 3cf0_A Transitional endoplasmi 91.4 0.37 1.3E-05 45.2 7.1 24 111-134 48-72 (301)
329 3uie_A Adenylyl-sulfate kinase 91.3 0.1 3.5E-06 45.8 2.9 19 116-134 30-48 (200)
330 3tui_C Methionine import ATP-b 91.3 0.11 3.7E-06 50.6 3.3 24 112-135 54-78 (366)
331 2pjz_A Hypothetical protein ST 91.3 0.086 3E-06 48.9 2.4 24 112-135 30-54 (263)
332 3aez_A Pantothenate kinase; tr 91.2 0.11 3.7E-06 49.5 3.2 19 116-134 95-113 (312)
333 2yyz_A Sugar ABC transporter, 91.1 0.12 4E-06 50.3 3.3 24 112-135 29-53 (359)
334 2it1_A 362AA long hypothetical 91.0 0.12 4.2E-06 50.2 3.3 24 112-135 29-53 (362)
335 3lw7_A Adenylate kinase relate 90.9 0.097 3.3E-06 44.0 2.3 16 116-131 6-21 (179)
336 1xwi_A SKD1 protein; VPS4B, AA 90.8 0.39 1.3E-05 45.6 6.7 23 112-134 45-68 (322)
337 2ehv_A Hypothetical protein PH 90.8 0.1 3.5E-06 47.0 2.4 18 116-133 35-52 (251)
338 3qf7_A RAD50; ABC-ATPase, ATPa 90.8 0.44 1.5E-05 46.2 7.1 17 116-132 28-44 (365)
339 3rlf_A Maltose/maltodextrin im 90.7 0.13 4.6E-06 50.3 3.3 24 112-135 29-53 (381)
340 1v43_A Sugar-binding transport 90.7 0.13 4.6E-06 50.1 3.3 24 112-135 37-61 (372)
341 1d2n_A N-ethylmaleimide-sensit 90.7 0.34 1.2E-05 44.5 6.0 22 113-134 65-87 (272)
342 3kb2_A SPBC2 prophage-derived 90.7 0.1 3.6E-06 44.0 2.2 18 116-133 6-23 (173)
343 3jvv_A Twitching mobility prot 90.7 0.11 3.7E-06 50.5 2.6 19 116-134 128-146 (356)
344 1z47_A CYSA, putative ABC-tran 90.6 0.11 3.6E-06 50.5 2.5 20 116-135 46-65 (355)
345 3bfv_A CAPA1, CAPB2, membrane 90.5 0.25 8.6E-06 45.8 4.9 65 159-235 192-257 (271)
346 3eie_A Vacuolar protein sortin 90.5 0.54 1.9E-05 44.5 7.4 23 112-134 51-74 (322)
347 1iy2_A ATP-dependent metallopr 90.5 0.13 4.4E-06 47.7 2.9 22 113-134 74-96 (278)
348 3gd7_A Fusion complex of cysti 90.5 0.15 5.2E-06 50.1 3.5 24 111-134 46-70 (390)
349 3vaa_A Shikimate kinase, SK; s 90.5 0.15 5E-06 44.7 3.1 18 116-133 30-47 (199)
350 1ly1_A Polynucleotide kinase; 90.4 0.12 4E-06 44.0 2.3 18 116-133 7-24 (181)
351 3zq6_A Putative arsenical pump 90.4 11 0.00039 35.3 16.6 89 187-277 215-317 (324)
352 2f1r_A Molybdopterin-guanine d 90.3 0.058 2E-06 46.7 0.3 19 116-134 7-25 (171)
353 3ug7_A Arsenical pump-driving 90.2 12 0.0004 35.7 16.8 86 192-279 237-334 (349)
354 2jeo_A Uridine-cytidine kinase 90.2 0.15 5E-06 46.4 2.9 19 116-134 30-48 (245)
355 1g29_1 MALK, maltose transport 90.2 0.12 4.1E-06 50.5 2.5 20 116-135 34-53 (372)
356 2qt1_A Nicotinamide riboside k 90.2 0.2 6.7E-06 44.1 3.7 19 116-134 26-44 (207)
357 2ewv_A Twitching motility prot 90.1 0.14 4.7E-06 50.0 2.8 19 116-134 141-159 (372)
358 3kta_A Chromosome segregation 90.1 0.12 4.2E-06 44.3 2.2 18 116-133 31-48 (182)
359 2pt7_A CAG-ALFA; ATPase, prote 90.0 0.12 4.1E-06 49.6 2.2 19 116-134 176-194 (330)
360 3d31_A Sulfate/molybdate ABC t 89.9 0.11 3.9E-06 50.2 2.0 24 112-135 26-50 (348)
361 2gza_A Type IV secretion syste 89.9 0.14 4.7E-06 49.8 2.6 23 112-134 175-198 (361)
362 2v1u_A Cell division control p 89.8 1.1 3.7E-05 42.8 8.9 20 115-134 48-67 (387)
363 1qhx_A CPT, protein (chloramph 89.7 0.14 4.9E-06 43.6 2.3 18 116-133 8-25 (178)
364 1f2t_A RAD50 ABC-ATPase; DNA d 89.7 0.17 5.8E-06 42.5 2.7 17 116-132 28-44 (149)
365 1sq5_A Pantothenate kinase; P- 89.7 0.19 6.4E-06 47.6 3.3 19 116-134 85-103 (308)
366 1cr0_A DNA primase/helicase; R 89.6 0.18 6.1E-06 47.1 3.1 19 116-134 40-58 (296)
367 1nks_A Adenylate kinase; therm 89.5 0.16 5.5E-06 43.6 2.5 18 116-133 6-23 (194)
368 3n70_A Transport activator; si 89.4 0.24 8.3E-06 41.0 3.5 20 115-134 28-47 (145)
369 2ph1_A Nucleotide-binding prot 89.4 0.97 3.3E-05 41.2 7.9 67 157-234 127-194 (262)
370 1rz3_A Hypothetical protein rb 89.4 0.21 7E-06 43.9 3.2 18 116-133 27-44 (201)
371 3cf2_A TER ATPase, transitiona 89.4 0.44 1.5E-05 51.1 6.2 26 110-135 236-262 (806)
372 1p9r_A General secretion pathw 89.3 0.16 5.4E-06 50.4 2.6 19 116-134 172-190 (418)
373 3t61_A Gluconokinase; PSI-biol 89.2 0.14 4.9E-06 44.8 2.0 19 116-134 23-41 (202)
374 1lv7_A FTSH; alpha/beta domain 89.2 0.19 6.5E-06 45.8 2.9 22 113-134 46-68 (257)
375 3vfd_A Spastin; ATPase, microt 89.2 0.53 1.8E-05 45.8 6.3 22 112-133 148-170 (389)
376 1oxx_K GLCV, glucose, ABC tran 89.2 0.11 3.8E-06 50.3 1.3 20 116-135 36-55 (353)
377 3zvl_A Bifunctional polynucleo 89.2 0.79 2.7E-05 45.2 7.6 19 116-134 263-281 (416)
378 2rhm_A Putative kinase; P-loop 89.1 0.18 6.1E-06 43.5 2.5 18 116-133 10-27 (193)
379 1jjv_A Dephospho-COA kinase; P 89.0 0.18 6.1E-06 44.2 2.4 18 116-133 7-24 (206)
380 3ozx_A RNAse L inhibitor; ATP 89.0 0.23 7.8E-06 51.0 3.5 20 116-135 30-49 (538)
381 1cke_A CK, MSSA, protein (cyti 89.0 0.15 5.2E-06 45.3 2.0 18 116-133 10-27 (227)
382 2oap_1 GSPE-2, type II secreti 89.0 0.17 5.9E-06 51.5 2.6 19 116-134 265-283 (511)
383 2w0m_A SSO2452; RECA, SSPF, un 89.0 0.15 5.2E-06 45.1 2.0 19 116-134 28-46 (235)
384 2if2_A Dephospho-COA kinase; a 88.9 0.17 5.7E-06 44.3 2.2 18 116-133 6-23 (204)
385 1lw7_A Transcriptional regulat 88.8 0.12 4.3E-06 50.0 1.4 24 112-135 170-194 (365)
386 1in4_A RUVB, holliday junction 88.8 0.2 6.9E-06 47.9 2.8 22 113-134 53-74 (334)
387 1kht_A Adenylate kinase; phosp 88.7 0.18 6.2E-06 43.2 2.3 18 116-133 8-25 (192)
388 3d8b_A Fidgetin-like protein 1 88.5 0.54 1.9E-05 45.3 5.8 22 112-133 117-139 (357)
389 3hu3_A Transitional endoplasmi 88.5 0.52 1.8E-05 47.7 5.8 22 112-133 238-260 (489)
390 3cio_A ETK, tyrosine-protein k 88.3 0.58 2E-05 44.0 5.7 65 159-235 214-279 (299)
391 2yvu_A Probable adenylyl-sulfa 88.3 0.3 1E-05 42.0 3.5 18 116-133 18-35 (186)
392 2cvh_A DNA repair and recombin 88.3 0.24 8.2E-06 43.5 2.8 18 116-133 25-42 (220)
393 2chg_A Replication factor C sm 88.2 0.83 2.8E-05 39.5 6.3 19 115-133 42-60 (226)
394 1yqt_A RNAse L inhibitor; ATP- 88.2 0.25 8.6E-06 50.6 3.3 24 112-135 47-71 (538)
395 2jaq_A Deoxyguanosine kinase; 88.1 0.21 7.1E-06 43.4 2.3 18 116-133 5-22 (205)
396 1sxj_A Activator 1 95 kDa subu 88.1 0.88 3E-05 46.2 7.3 21 113-133 78-99 (516)
397 1svm_A Large T antigen; AAA+ f 88.1 0.23 8E-06 48.5 2.9 22 112-133 169-191 (377)
398 1y63_A LMAJ004144AAA protein; 88.1 0.3 1E-05 42.1 3.3 19 116-134 15-33 (184)
399 3b60_A Lipid A export ATP-bind 88.1 0.27 9.4E-06 50.8 3.5 26 110-135 367-393 (582)
400 3u61_B DNA polymerase accessor 88.0 1.4 4.6E-05 41.4 8.1 99 113-236 49-150 (324)
401 2npi_A Protein CLP1; CLP1-PCF1 87.9 0.24 8.2E-06 49.7 2.8 24 111-134 137-161 (460)
402 4e22_A Cytidylate kinase; P-lo 87.8 0.3 1E-05 44.6 3.3 17 116-132 32-48 (252)
403 3cm0_A Adenylate kinase; ATP-b 87.8 0.23 7.7E-06 42.6 2.3 18 116-133 9-26 (186)
404 2vp4_A Deoxynucleoside kinase; 87.6 0.25 8.4E-06 44.4 2.5 19 116-134 25-43 (230)
405 3j16_B RLI1P; ribosome recycli 87.4 0.31 1.1E-05 50.7 3.4 24 112-135 103-127 (608)
406 2zan_A Vacuolar protein sortin 87.4 1.2 4E-05 44.3 7.5 24 111-134 166-190 (444)
407 2b8t_A Thymidine kinase; deoxy 87.3 0.52 1.8E-05 42.5 4.4 43 192-236 88-130 (223)
408 2obl_A ESCN; ATPase, hydrolase 87.3 0.29 9.9E-06 47.3 2.9 24 112-135 71-95 (347)
409 3b5x_A Lipid A export ATP-bind 87.2 0.29 1E-05 50.6 3.1 25 111-135 368-393 (582)
410 1n0w_A DNA repair protein RAD5 87.2 0.23 7.9E-06 44.4 2.0 19 116-134 29-47 (243)
411 3qf4_B Uncharacterized ABC tra 87.1 0.3 1E-05 50.7 3.1 26 110-135 379-405 (598)
412 2yl4_A ATP-binding cassette SU 87.0 0.28 9.4E-06 50.9 2.8 26 110-135 368-394 (595)
413 3trf_A Shikimate kinase, SK; a 87.0 0.27 9.3E-06 42.1 2.3 18 115-132 9-26 (185)
414 2pez_A Bifunctional 3'-phospho 86.9 0.37 1.3E-05 41.1 3.1 18 116-133 10-27 (179)
415 2plr_A DTMP kinase, probable t 86.9 0.27 9.3E-06 42.9 2.3 18 116-133 9-26 (213)
416 1gtv_A TMK, thymidylate kinase 86.9 0.16 5.4E-06 44.7 0.7 18 116-133 5-22 (214)
417 3iij_A Coilin-interacting nucl 86.7 0.29 9.8E-06 41.8 2.3 17 116-132 16-32 (180)
418 3bk7_A ABC transporter ATP-bin 86.6 0.35 1.2E-05 50.4 3.2 24 112-135 117-141 (607)
419 1odf_A YGR205W, hypothetical 3 86.6 0.37 1.3E-05 45.3 3.1 19 116-134 36-54 (290)
420 1via_A Shikimate kinase; struc 86.5 0.3 1E-05 41.6 2.3 18 116-133 9-26 (175)
421 1zak_A Adenylate kinase; ATP:A 86.4 0.44 1.5E-05 42.3 3.4 19 115-133 9-27 (222)
422 2ce7_A Cell division protein F 86.4 0.88 3E-05 45.8 6.0 22 113-134 50-72 (476)
423 3ea0_A ATPase, para family; al 86.3 1.1 3.7E-05 40.0 6.1 68 159-237 119-187 (245)
424 2wwf_A Thymidilate kinase, put 86.3 0.33 1.1E-05 42.5 2.5 18 116-133 15-32 (212)
425 1gvn_B Zeta; postsegregational 86.2 0.29 9.9E-06 45.8 2.2 18 116-133 38-55 (287)
426 3fb4_A Adenylate kinase; psych 86.2 0.31 1.1E-05 42.9 2.3 18 116-133 5-22 (216)
427 3bos_A Putative DNA replicatio 86.2 0.39 1.4E-05 42.5 3.0 19 116-134 57-75 (242)
428 3qks_A DNA double-strand break 86.1 0.37 1.2E-05 42.6 2.7 17 116-132 28-44 (203)
429 1tev_A UMP-CMP kinase; ploop, 86.1 0.32 1.1E-05 41.7 2.3 18 116-133 8-25 (196)
430 2c95_A Adenylate kinase 1; tra 86.0 0.35 1.2E-05 41.6 2.5 18 116-133 14-31 (196)
431 1aky_A Adenylate kinase; ATP:A 86.0 0.42 1.4E-05 42.4 3.0 18 116-133 9-26 (220)
432 1qvr_A CLPB protein; coiled co 85.9 1.9 6.3E-05 46.7 8.7 22 113-134 193-214 (854)
433 3tqc_A Pantothenate kinase; bi 85.9 0.29 9.9E-06 46.8 2.0 18 116-133 97-114 (321)
434 3euj_A Chromosome partition pr 85.9 0.28 9.6E-06 49.5 2.0 18 116-133 34-51 (483)
435 3dl0_A Adenylate kinase; phosp 85.8 0.34 1.2E-05 42.8 2.3 18 116-133 5-22 (216)
436 3tqf_A HPR(Ser) kinase; transf 85.7 0.6 2.1E-05 40.5 3.7 28 112-139 16-44 (181)
437 4a82_A Cystic fibrosis transme 85.6 0.26 9E-06 50.9 1.7 26 110-135 365-391 (578)
438 2v54_A DTMP kinase, thymidylat 85.6 0.35 1.2E-05 42.0 2.3 19 116-134 9-27 (204)
439 1nn5_A Similar to deoxythymidy 85.6 0.37 1.3E-05 42.1 2.5 18 116-133 14-31 (215)
440 2z0h_A DTMP kinase, thymidylat 85.5 0.35 1.2E-05 41.6 2.3 18 116-133 5-22 (197)
441 1zd8_A GTP:AMP phosphotransfer 85.5 0.37 1.3E-05 43.0 2.5 18 115-132 11-28 (227)
442 3la6_A Tyrosine-protein kinase 85.5 0.97 3.3E-05 42.2 5.5 67 159-236 202-268 (286)
443 2pbr_A DTMP kinase, thymidylat 85.5 0.35 1.2E-05 41.4 2.3 18 116-133 5-22 (195)
444 2bwj_A Adenylate kinase 5; pho 85.5 0.39 1.3E-05 41.5 2.5 18 116-133 17-34 (199)
445 1uf9_A TT1252 protein; P-loop, 85.4 0.54 1.9E-05 40.7 3.5 19 116-134 13-31 (203)
446 1ukz_A Uridylate kinase; trans 85.3 0.56 1.9E-05 40.8 3.5 18 116-133 20-37 (203)
447 3qf4_A ABC transporter, ATP-bi 85.3 0.32 1.1E-05 50.4 2.2 26 110-135 367-393 (587)
448 1qf9_A UMP/CMP kinase, protein 85.2 0.4 1.4E-05 41.0 2.5 18 116-133 11-28 (194)
449 2w58_A DNAI, primosome compone 85.2 0.51 1.8E-05 41.0 3.2 20 114-133 56-76 (202)
450 1tue_A Replication protein E1; 85.2 0.35 1.2E-05 43.2 2.0 20 113-132 59-79 (212)
451 2p65_A Hypothetical protein PF 85.2 0.39 1.3E-05 40.5 2.3 20 115-134 47-66 (187)
452 1e6c_A Shikimate kinase; phosp 85.2 0.37 1.3E-05 40.6 2.2 18 116-133 7-24 (173)
453 3a4m_A L-seryl-tRNA(SEC) kinas 84.9 0.38 1.3E-05 44.1 2.3 18 116-133 9-26 (260)
454 1qhl_A Protein (cell division 84.9 0.11 3.9E-06 47.1 -1.3 20 116-135 32-51 (227)
455 1wcv_1 SOJ, segregation protei 84.9 0.97 3.3E-05 41.0 5.1 69 157-236 110-183 (257)
456 3qkt_A DNA double-strand break 84.9 0.42 1.4E-05 45.7 2.7 20 113-132 23-44 (339)
457 2qmh_A HPR kinase/phosphorylas 84.9 0.74 2.5E-05 40.8 4.0 25 113-137 35-60 (205)
458 2vli_A Antibiotic resistance p 84.9 0.29 1E-05 41.7 1.4 17 116-132 10-26 (183)
459 2cdn_A Adenylate kinase; phosp 84.9 0.39 1.4E-05 41.8 2.3 18 116-133 25-42 (201)
460 1m7g_A Adenylylsulfate kinase; 84.8 0.54 1.8E-05 41.4 3.2 18 116-133 30-47 (211)
461 2pt5_A Shikimate kinase, SK; a 84.8 0.39 1.4E-05 40.3 2.2 18 116-133 5-22 (168)
462 3q9l_A Septum site-determining 84.8 0.97 3.3E-05 40.7 5.0 66 158-234 113-185 (260)
463 1nlf_A Regulatory protein REPA 84.7 0.38 1.3E-05 44.5 2.2 18 116-133 35-52 (279)
464 3umf_A Adenylate kinase; rossm 84.7 0.53 1.8E-05 42.2 3.1 18 116-133 34-51 (217)
465 2iyv_A Shikimate kinase, SK; t 84.6 0.42 1.4E-05 40.9 2.3 18 116-133 7-24 (184)
466 2ze6_A Isopentenyl transferase 84.5 0.41 1.4E-05 43.8 2.3 18 116-133 6-23 (253)
467 1ko7_A HPR kinase/phosphatase; 84.5 0.69 2.4E-05 43.9 3.9 30 112-141 144-174 (314)
468 1yqt_A RNAse L inhibitor; ATP- 84.5 0.45 1.5E-05 48.7 2.8 23 113-135 313-336 (538)
469 1e4v_A Adenylate kinase; trans 84.3 0.46 1.6E-05 41.9 2.5 18 116-133 5-22 (214)
470 2oze_A ORF delta'; para, walke 84.3 2.3 7.8E-05 39.3 7.5 68 158-236 154-226 (298)
471 2dpy_A FLII, flagellum-specifi 84.0 0.41 1.4E-05 47.7 2.2 24 112-135 157-181 (438)
472 3tlx_A Adenylate kinase 2; str 83.8 0.64 2.2E-05 42.1 3.3 18 116-133 34-51 (243)
473 3syl_A Protein CBBX; photosynt 83.8 0.7 2.4E-05 43.0 3.6 18 116-133 72-89 (309)
474 3kjh_A CO dehydrogenase/acetyl 83.7 0.75 2.6E-05 41.1 3.7 63 159-233 132-194 (254)
475 3ozx_A RNAse L inhibitor; ATP 83.7 0.45 1.6E-05 48.7 2.4 20 116-135 299-318 (538)
476 3cf2_A TER ATPase, transitiona 83.6 1.9 6.4E-05 46.3 7.2 25 111-135 510-535 (806)
477 2p5t_B PEZT; postsegregational 83.5 0.32 1.1E-05 44.4 1.1 18 116-133 37-54 (253)
478 2xb4_A Adenylate kinase; ATP-b 83.4 0.49 1.7E-05 42.2 2.3 18 116-133 5-22 (223)
479 3sr0_A Adenylate kinase; phosp 83.2 0.52 1.8E-05 41.8 2.4 18 116-133 5-22 (206)
480 4fcw_A Chaperone protein CLPB; 83.1 0.61 2.1E-05 43.4 2.9 23 112-134 47-70 (311)
481 2dhr_A FTSH; AAA+ protein, hex 83.0 0.57 1.9E-05 47.5 2.8 22 113-134 65-87 (499)
482 2qby_A CDC6 homolog 1, cell di 83.0 0.61 2.1E-05 44.5 2.9 19 116-134 50-68 (386)
483 2dr3_A UPF0273 protein PH0284; 82.9 0.57 2E-05 41.8 2.6 18 116-133 28-45 (247)
484 2r62_A Cell division protease 82.9 0.38 1.3E-05 43.9 1.3 22 113-134 45-67 (268)
485 3nwj_A ATSK2; P loop, shikimat 82.8 0.48 1.6E-05 43.5 2.0 18 116-133 53-70 (250)
486 3be4_A Adenylate kinase; malar 82.8 0.58 2E-05 41.4 2.5 18 116-133 10-27 (217)
487 3bk7_A ABC transporter ATP-bin 82.6 0.53 1.8E-05 48.9 2.5 20 116-135 387-406 (607)
488 1vht_A Dephospho-COA kinase; s 82.5 0.55 1.9E-05 41.4 2.3 18 116-133 9-26 (218)
489 1zuh_A Shikimate kinase; alpha 82.5 0.57 1.9E-05 39.4 2.2 18 116-133 12-29 (168)
490 1njg_A DNA polymerase III subu 82.2 0.6 2E-05 40.9 2.3 18 116-133 50-67 (250)
491 4eaq_A DTMP kinase, thymidylat 82.1 0.6 2.1E-05 42.0 2.3 18 116-133 31-48 (229)
492 3auy_A DNA double-strand break 81.9 0.7 2.4E-05 44.8 2.9 20 113-132 25-46 (371)
493 1ofh_A ATP-dependent HSL prote 81.9 0.76 2.6E-05 42.5 3.1 19 115-133 54-72 (310)
494 1g3q_A MIND ATPase, cell divis 81.7 1.1 3.7E-05 39.8 3.9 66 159-236 112-177 (237)
495 4f4c_A Multidrug resistance pr 81.6 0.53 1.8E-05 53.5 2.2 24 110-133 1103-1127(1321)
496 1ypw_A Transitional endoplasmi 81.6 2.5 8.7E-05 45.4 7.4 24 111-134 237-261 (806)
497 1e69_A Chromosome segregation 81.4 0.62 2.1E-05 44.2 2.3 17 116-132 29-45 (322)
498 1pzn_A RAD51, DNA repair and r 81.4 0.61 2.1E-05 44.9 2.2 19 116-134 136-154 (349)
499 2qp9_X Vacuolar protein sortin 81.4 0.79 2.7E-05 44.1 3.1 24 111-134 83-107 (355)
500 1ltq_A Polynucleotide kinase; 81.1 0.66 2.3E-05 43.1 2.3 18 116-133 7-24 (301)
No 1
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=100.00 E-value=1.1e-58 Score=450.45 Aligned_cols=291 Identities=35% Similarity=0.562 Sum_probs=260.8
Q ss_pred CCeeE--EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC-CeeEEEEeCCCCchhh-hhhHhHHHHHHHH
Q 015293 111 PNHKS--VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKK-IHMLDSMMMKNVR 186 (409)
Q Consensus 111 ~~~~~--ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~-~~~i~liDtpG~~~~~-~~~l~~~~~~~~~ 186 (409)
+..|+ ++|.||||||||+|+|+|.+++++++.++||++...++...+ +.++.||||||+.... .+.+...+...+.
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 34555 999999999999999999999989999999999999998888 9999999999985421 1556777888888
Q ss_pred HhhcCcceEEEEeeCCCCCChHHHHH-HHHhccCCCCCCEEEEEecCCCC-ChhhHHHHHHHHHhcC-CCceEEEcccCC
Q 015293 187 SAGINADCIVVLVDACKAPERIDEIL-EEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFT-DVDEVIPVSAKY 263 (409)
Q Consensus 187 ~~~~~aDvillVvD~~~~~~~~~~~l-~~~l~~~~~~~p~ilvlNK~Dl~-~~~~~~~~~~~~~~~~-~~~~iv~iSA~~ 263 (409)
.++..+|++++|+|++++....+..+ .+.+.. .+.|+++|+||+|+. ...........+.... .+.+++++||++
T Consensus 88 ~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~--~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~ 165 (308)
T 3iev_A 88 QSLEEADVILFMIDATEGWRPRDEEIYQNFIKP--LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALK 165 (308)
T ss_dssp HHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG--GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTT
T ss_pred HHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh--cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 89999999999999998876666655 666665 679999999999998 5555555555555444 567899999999
Q ss_pred CCCHHHHHHHHHhhCCCCCCCCCCccccCchHHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecC--CCeeEEEEEEE
Q 015293 264 GHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRP--TAKDFIQVEIV 341 (409)
Q Consensus 264 g~gi~~L~~~L~~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~~~~eipys~~v~v~~~~~~~--~~~~~i~~~i~ 341 (409)
|.|+++|+++|.+.++++++.||.+..++++.+++++|++||+++..+++|+||++.+.++.|++++ ++...|.+.|+
T Consensus 166 g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~~v~i~~~~~~~~~~~~~~i~a~i~ 245 (308)
T 3iev_A 166 GANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDANPNMLVIKGEII 245 (308)
T ss_dssp TBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEECSSCTTSEEEEEEEE
T ss_pred CCCHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCeeEEEeEEEEEccCCCCeEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999886 36789999999
Q ss_pred EeeCCcceEEeecCCchHHHHHHHHHHHHHHHcCCcEEEEEEEEeCCCcccCHHHHhhcCCc
Q 015293 342 VEKNSQKIILIGKGGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKHYGYG 403 (409)
Q Consensus 342 v~~~~~~~iliG~~G~~ik~i~~~ar~~l~~~~~~~v~l~l~vkv~~~w~~~~~~~~~~g~~ 403 (409)
|+|+|||.|+||++|++||+|+..||++||++||++|||+|||||+++||+|+..|++|||.
T Consensus 246 ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~l~vkv~~~w~~~~~~~~~~g~~ 307 (308)
T 3iev_A 246 VDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLELWVKVVPDWRRRPEYVRLFGYA 307 (308)
T ss_dssp ESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEEEEEEECTTGGGCHHHHHHTTCC
T ss_pred EccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEEEEEEECCCcccCHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999995
No 2
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=100.00 E-value=1.2e-57 Score=441.68 Aligned_cols=285 Identities=36% Similarity=0.557 Sum_probs=257.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
|+|+||||||||+|+|++.+++++++.++||++...+++..++.++.||||||+.. ..+.+...+...+..++..+|++
T Consensus 12 ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~-~~~~l~~~~~~~~~~~l~~ad~i 90 (301)
T 1wf3_A 12 IVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHK-PMDALGEFMDQEVYEALADVNAV 90 (301)
T ss_dssp EECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCC-CCSHHHHHHHHHHHHHTSSCSEE
T ss_pred EECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccc-hhhHHHHHHHHHHHHHHhcCCEE
Confidence 99999999999999999999998899999999988888888899999999999854 44567777888888999999999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh-HHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 274 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~-~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L 274 (409)
++|+|++++....+.++++.++....+.|+++|+||+|+..... +......+ .++.+++++||++|.|+++|++.|
T Consensus 91 l~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~~iSA~~g~gv~~l~~~l 167 (301)
T 1wf3_A 91 VWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL---LPEAEPRMLSALDERQVAELKADL 167 (301)
T ss_dssp EEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT---STTSEEEECCTTCHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh---cCcCcEEEEeCCCCCCHHHHHHHH
Confidence 99999998887777777766665223799999999999986554 33333332 456689999999999999999999
Q ss_pred HhhCCCCCCCCCCccc-cCchHHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCCeeEEEEEEEEeeCCcceEEee
Q 015293 275 LTKLPLGPAYYPKDIV-SEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIG 353 (409)
Q Consensus 275 ~~~l~~~~~~~~~~~~-t~~~~r~~i~EiiRe~i~~~~~~eipys~~v~v~~~~~~~~~~~~i~~~i~v~~~~~~~iliG 353 (409)
.+.++++++.||.+.. ++.|.++.++|++|++++..+++++||++.+.++.|++++++..+|.+.++|||++|+.|+||
T Consensus 168 ~~~l~~~~~~y~~~~~~td~~~~~~~~e~~Re~~~~~l~~eiP~~~~v~i~~~~~~~~~~~~i~~~i~ve~~~~k~iiig 247 (301)
T 1wf3_A 168 LALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAILYVERPSQKAIVIG 247 (301)
T ss_dssp HTTCCBCCCSSCTTCCSBSSCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEEETTTEEEEEEEEEESSHHHHHHHHC
T ss_pred HHhcccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhcccCceEEEEEEEEEecCCCeEEEEEEEEEeeCCceEEEEe
Confidence 9999999999999888 999999999999999999999999999999999999987677899999999999999999999
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCcEEEEEEEEeCCCcccCHHHHhhcCCcc
Q 015293 354 KGGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKHYGYGG 404 (409)
Q Consensus 354 ~~G~~ik~i~~~ar~~l~~~~~~~v~l~l~vkv~~~w~~~~~~~~~~g~~~ 404 (409)
++|.+||+|+.+||++||++|+++|||+|||||+++||+|+..|++|||..
T Consensus 248 ~~g~~lk~i~~~ar~~~~~~~~~~v~l~l~vkv~~~w~~~~~~~~~~g~~~ 298 (301)
T 1wf3_A 248 EGGRKIKEIGQATRKQLEALLGKKVYLDLEVKVYPDWRKDPEALRELGYRS 298 (301)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTSEEEEEEEEEECTTGGGCHHHHHHHTCCC
T ss_pred CCchHHHHHHHHHHHHHHHHHCCceEEEEEEEECCCcccCHHHHHHcCCCc
Confidence 999999999999999999999999999999999999999999999999964
No 3
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=100.00 E-value=6.9e-55 Score=422.44 Aligned_cols=287 Identities=32% Similarity=0.565 Sum_probs=252.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
|+|+||||||||+|+|+|.+++++++.++||++...+++..++.++.++||||+.......+...+...+..++..+|++
T Consensus 13 IvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~v 92 (301)
T 1ega_A 13 IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELV 92 (301)
T ss_dssp EECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEE
T ss_pred EECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEE
Confidence 99999999999999999999988899999999988888888899999999999752344455555666667788999999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC-hhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK-PGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 274 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~-~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L 274 (409)
++|+|+++ ....+.++.+.+.. .+.|+++|+||+|+.. ...+......+....++..++++||++|.|+++|++.|
T Consensus 93 l~Vvd~~~-~~~~~~~i~~~l~~--~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 93 IFVVEGTR-WTPDDEMVLNKLRE--GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp EEEEETTC-CCHHHHHHHHHHHS--SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred EEEEeCCC-CCHHHHHHHHHHHh--cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 99999988 77777777777665 6799999999999987 44454555555554455679999999999999999999
Q ss_pred HhhCCCCCCCCCCccccCchHHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCCeeEEEEEEEEeeCCcceEEeec
Q 015293 275 LTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGK 354 (409)
Q Consensus 275 ~~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~~~~eipys~~v~v~~~~~~~~~~~~i~~~i~v~~~~~~~iliG~ 354 (409)
...++++++.||.+..++.|.++.++|++|++++..+.+++||++.+.++.|+++.++.+.|.+.++|+|+|||+|+||+
T Consensus 170 ~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~~~v~i~~~~~~~~~~~~i~~~i~v~~~~~k~i~ig~ 249 (301)
T 1ega_A 170 RKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQKKMVIGN 249 (301)
T ss_dssp HTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEEEEECCSSCSEEEEEEEEESSHHHHHHHHCG
T ss_pred HHhCCcCCCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEEEEecCCCeEEEEEEEEEEECCceEEEECC
Confidence 99999999999999999999999999999999999999999999999999999876667889999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHcCCcEEEEEEEEeCCCcccCHHHHhhcCCccc
Q 015293 355 GGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKHYGYGGQ 405 (409)
Q Consensus 355 ~G~~ik~i~~~ar~~l~~~~~~~v~l~l~vkv~~~w~~~~~~~~~~g~~~~ 405 (409)
+|++||+|+.+||.+||++||++|+|+|||||+++||+++..|++|||..+
T Consensus 250 ~G~~~k~ig~~ar~~i~~~~~~~v~l~l~vkv~~~w~~~~~~~~~~g~~~~ 300 (301)
T 1ega_A 250 KGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERALRSLGYVDD 300 (301)
T ss_dssp GGHHHHHHHHHHHHHHHHHTTSCEEEEEEEEETTCCCHHHHHHTTC-----
T ss_pred CcHHHHHHHHHHHHHHHHHHCCCeEEEEEEEECCCcccCHHHHHHcCCCCC
Confidence 999999999999999999999999999999999999999999999999653
No 4
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.90 E-value=4e-24 Score=218.40 Aligned_cols=156 Identities=28% Similarity=0.285 Sum_probs=95.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
|+|+||||||||+|+|++.+.+++++.++||++.....+..++.++.||||||+.+ ..+.++..+++.+..++..||++
T Consensus 238 ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~-~~~~ve~~gi~~~~~~~~~aD~v 316 (476)
T 3gee_A 238 IAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE-AGEEIEHEGIRRSRMKMAEADLI 316 (476)
T ss_dssp EECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC---------------------CCCSSCSEE
T ss_pred EECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc-chhHHHHHHHHHHHhhcccCCEE
Confidence 99999999999999999998888999999999999888888999999999999753 33445555667778889999999
Q ss_pred EEEeeCCCCCCh----HHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHH
Q 015293 196 VVLVDACKAPER----IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 271 (409)
Q Consensus 196 llVvD~~~~~~~----~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~ 271 (409)
++|+|++++... ....+...+ .++|+++|+||+|+........ ..+... ++.+++++||++|.|+++|+
T Consensus 317 l~VvD~s~~~s~~~~~~~~~~l~~l----~~~piIvV~NK~Dl~~~~~~~~--~~l~~~-~~~~~i~vSAktg~GI~eL~ 389 (476)
T 3gee_A 317 LYLLDLGTERLDDELTEIRELKAAH----PAAKFLTVANKLDRAANADALI--RAIADG-TGTEVIGISALNGDGIDTLK 389 (476)
T ss_dssp EEEEETTTCSSGGGHHHHHHHHHHC----TTSEEEEEEECTTSCTTTHHHH--HHHHHH-HTSCEEECBTTTTBSHHHHH
T ss_pred EEEEECCCCcchhhhHHHHHHHHhc----CCCCEEEEEECcCCCCccchhH--HHHHhc-CCCceEEEEECCCCCHHHHH
Confidence 999999987754 333333333 3689999999999987654432 122221 12578999999999999999
Q ss_pred HHHHhhCC
Q 015293 272 DWILTKLP 279 (409)
Q Consensus 272 ~~L~~~l~ 279 (409)
++|.+.+.
T Consensus 390 ~~i~~~~~ 397 (476)
T 3gee_A 390 QHMGDLVK 397 (476)
T ss_dssp HHHTHHHH
T ss_pred HHHHHHHh
Confidence 99999886
No 5
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=2.1e-23 Score=211.77 Aligned_cols=160 Identities=27% Similarity=0.358 Sum_probs=117.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
|+|+||||||||+|+|++.+.+++++.|++|++.....+.+++..+.+|||||+.....+.+...+...+..+++.||++
T Consensus 6 ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~i 85 (439)
T 1mky_A 6 IVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLV 85 (439)
T ss_dssp EECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEE
T ss_pred EECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEE
Confidence 99999999999999999999888999999999999999999999999999999754333445555667788889999999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHH-HHHHHhcCCCceEEEcccCCCCCHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-LEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 274 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~-~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L 274 (409)
++|+|++.+....+.++...++. .++|+++|+||+|+..... ... .+++ . .++.+++++||++|.|+++|++.|
T Consensus 86 l~V~D~~~~~~~~d~~i~~~l~~--~~~p~ilv~NK~D~~~~~~-~~~~~~~~-~-lg~~~~~~iSA~~g~gv~~L~~~i 160 (439)
T 1mky_A 86 LFVVDGKRGITKEDESLADFLRK--STVDTILVANKAENLREFE-REVKPELY-S-LGFGEPIPVSAEHNINLDTMLETI 160 (439)
T ss_dssp EEEEETTTCCCHHHHHHHHHHHH--HTCCEEEEEESCCSHHHHH-HHTHHHHG-G-GSSCSCEECBTTTTBSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCCccccH-HHHHHHHH-h-cCCCCEEEEeccCCCCHHHHHHHH
Confidence 99999998887777777777765 5799999999999853211 112 2222 2 244468999999999999999999
Q ss_pred HhhCCC
Q 015293 275 LTKLPL 280 (409)
Q Consensus 275 ~~~l~~ 280 (409)
.+.+++
T Consensus 161 ~~~l~~ 166 (439)
T 1mky_A 161 IKKLEE 166 (439)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 988764
No 6
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.89 E-value=1.6e-22 Score=185.34 Aligned_cols=166 Identities=21% Similarity=0.210 Sum_probs=123.2
Q ss_pred eE-EEecCCCChHHHHHHHhCCc-ceeeecCCCceEEEEEEEEe-CCCeeEEEEeCCCCchhhh-hhHh---HHHHHHHH
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKI-HMLD---SMMMKNVR 186 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~-~~~v~~~~~tt~~~~~~~~~-~~~~~i~liDtpG~~~~~~-~~l~---~~~~~~~~ 186 (409)
.+ |+|.+|+|||||+|+|++.. .+.++..+++|++.....+. .++..+.||||||+..... .... ..+.....
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 110 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYL 110 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHH
Confidence 44 99999999999999999987 56788899999887666555 6778999999999743210 0011 12233333
Q ss_pred HhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHH----HHHHHhc-----CCCceEE
Q 015293 187 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK----LEWYEKF-----TDVDEVI 257 (409)
Q Consensus 187 ~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~----~~~~~~~-----~~~~~iv 257 (409)
.....+|++++|+|++++.......+...+.. .+.|+++|+||+|+......... ...+... ....+++
T Consensus 111 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 188 (223)
T 4dhe_A 111 QTRPQLCGMILMMDARRPLTELDRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQ 188 (223)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEE
T ss_pred hcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEE
Confidence 44556899999999998877777777777766 67999999999999876553322 2233332 3456899
Q ss_pred EcccCCCCCHHHHHHHHHhhCCCC
Q 015293 258 PVSAKYGHGVEDIRDWILTKLPLG 281 (409)
Q Consensus 258 ~iSA~~g~gi~~L~~~L~~~l~~~ 281 (409)
++||++|.|+++|+++|.+.++..
T Consensus 189 ~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 189 LFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp EEBTTTTBSHHHHHHHHHHHHC--
T ss_pred EeecCCCcCHHHHHHHHHHhcCcc
Confidence 999999999999999999988643
No 7
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.89 E-value=6.7e-23 Score=177.38 Aligned_cols=156 Identities=26% Similarity=0.368 Sum_probs=112.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|.+|+|||||+|+|.+.....+...+++|.+.....+..++..+.+|||||.... ..+...+...+..++..+|++
T Consensus 6 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~~~~~~~~~~~~~~~~~~ 83 (161)
T 2dyk_A 6 IVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG--DKWEKKIQEKVDRALEDAEVV 83 (161)
T ss_dssp EECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSS--SSCCHHHHHHHHHHTTTCSEE
T ss_pred EECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCc--cchHHHHHHHHHHHHHhCCEE
Confidence 999999999999999999887667788888888777777778889999999996431 123333445566678999999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~ 275 (409)
++|+|++++......++...+.. .+.|+++|+||+|+...... ...+.. .+..+++++||++|.|+++++++|.
T Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~---~~~~~~-~~~~~~~~~Sa~~~~gv~~l~~~l~ 157 (161)
T 2dyk_A 84 LFAVDGRAELTQADYEVAEYLRR--KGKPVILVATKVDDPKHELY---LGPLYG-LGFGDPIPTSSEHARGLEELLEAIW 157 (161)
T ss_dssp EEEEESSSCCCHHHHHHHHHHHH--HTCCEEEEEECCCSGGGGGG---CGGGGG-GSSCSCEECBTTTTBSHHHHHHHHH
T ss_pred EEEEECCCcccHhHHHHHHHHHh--cCCCEEEEEECcccccchHh---HHHHHh-CCCCCeEEEecccCCChHHHHHHHH
Confidence 99999998877766666666655 57999999999999754211 111222 2344789999999999999999999
Q ss_pred hhCC
Q 015293 276 TKLP 279 (409)
Q Consensus 276 ~~l~ 279 (409)
+.++
T Consensus 158 ~~l~ 161 (161)
T 2dyk_A 158 ERLP 161 (161)
T ss_dssp HHCC
T ss_pred HhCc
Confidence 8764
No 8
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.88 E-value=1.4e-23 Score=201.34 Aligned_cols=201 Identities=18% Similarity=0.250 Sum_probs=138.5
Q ss_pred eE-EEecCCCChHHHHHHHhCCcce-----eeecCCC----------------------ceEEE----------------
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLS-----IVTNKPQ----------------------TTRHR---------------- 149 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~-----~v~~~~~----------------------tt~~~---------------- 149 (409)
.+ ++|.||||||||+|+|+|.++. .++..|+ +|++.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g~~ 107 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTN 107 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSST
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhcccC
Confidence 44 9999999999999999998875 4455554 33220
Q ss_pred --------EEEEEeCCCeeEEEEeCCCCchhh----hhhHhHHHHHHHHHhhcCcceEE-EEeeCCCCCChHHH-HHHHH
Q 015293 150 --------ILGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGINADCIV-VLVDACKAPERIDE-ILEEG 215 (409)
Q Consensus 150 --------~~~~~~~~~~~i~liDtpG~~~~~----~~~l~~~~~~~~~~~~~~aDvil-lVvD~~~~~~~~~~-~l~~~ 215 (409)
...+.......+.||||||+.+.. ...+...+...+..++..++.++ +|+|++.+....+. .+...
T Consensus 108 ~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~ 187 (299)
T 2aka_B 108 KGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKE 187 (299)
T ss_dssp TCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHH
T ss_pred CCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHH
Confidence 001111124689999999986421 12233344455666777887665 79999877654442 35555
Q ss_pred hccCCCCCCEEEEEecCCCCChhh-HHHHHHH-HHhc-CCCceEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCccccC
Q 015293 216 VGDHKDKLPILLVLNKKDLIKPGE-IAKKLEW-YEKF-TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSE 292 (409)
Q Consensus 216 l~~~~~~~p~ilvlNK~Dl~~~~~-~~~~~~~-~~~~-~~~~~iv~iSA~~g~gi~~L~~~L~~~l~~~~~~~~~~~~t~ 292 (409)
+.. .+.|+++|+||+|+..... ....... .... .++.+++++||++|.|+++|+++|.+ ++++.|+.+..++
T Consensus 188 ~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~---~~~~~~~~~~~~~ 262 (299)
T 2aka_B 188 VDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA---ERKFFLSHPSYRH 262 (299)
T ss_dssp HCT--TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH---HHHHHHHCTTTGG
T ss_pred hCC--CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH---HHHHHhcCCcccc
Confidence 554 5789999999999976433 2221111 0000 13457899999999999999999987 4556667777777
Q ss_pred chHH---HHHHHHHHHHHHhhcCCCCCcee
Q 015293 293 HPER---FFVGEIIREKIFMQYRNEVPYAC 319 (409)
Q Consensus 293 ~~~r---~~i~EiiRe~i~~~~~~eipys~ 319 (409)
.+.+ +.+.+++|++++.++++++||..
T Consensus 263 ~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~ 292 (299)
T 2aka_B 263 LADRMGTPYLQKVLNQQLTNHIRDTLPGLR 292 (299)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhCHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 7777 88999999999999999999864
No 9
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.88 E-value=2.9e-23 Score=211.34 Aligned_cols=158 Identities=28% Similarity=0.386 Sum_probs=115.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|+||||||||+|+|++...+++++.++||++.....+..++.++.+|||||+.+ ..+.++..+++....++..+|++
T Consensus 229 ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~-~~~~ve~~gi~~~~~~~~~aD~v 307 (462)
T 3geh_A 229 IVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE-TSDQVEKIGVERSRQAANTADLV 307 (462)
T ss_dssp EEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC---------------------CCCCSCSEE
T ss_pred EEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCcccc-chhHHHHHHHHHHhhhhhcCCEE
Confidence 99999999999999999998888999999999887777777889999999999843 34455666667778889999999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~ 275 (409)
++|+|++++.......+...+. .+|+++|+||+|+....... .........+++++||++|.|+++|+++|.
T Consensus 308 l~VvD~s~~~~~~~~~i~~~l~----~~piivV~NK~Dl~~~~~~~----~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~ 379 (462)
T 3geh_A 308 LLTIDAATGWTTGDQEIYEQVK----HRPLILVMNKIDLVEKQLIT----SLEYPENITQIVHTAAAQKQGIDSLETAIL 379 (462)
T ss_dssp EEEEETTTCSCHHHHHHHHHHT----TSCEEEEEECTTSSCGGGST----TCCCCTTCCCEEEEBTTTTBSHHHHHHHHH
T ss_pred EEEeccCCCCCHHHHHHHHhcc----CCcEEEEEECCCCCcchhhH----HHHHhccCCcEEEEECCCCCCHHHHHHHHH
Confidence 9999999888777666666553 47999999999998754432 111112335789999999999999999999
Q ss_pred hhCCCCC
Q 015293 276 TKLPLGP 282 (409)
Q Consensus 276 ~~l~~~~ 282 (409)
+.+....
T Consensus 380 ~~~~~~~ 386 (462)
T 3geh_A 380 EIVQTGK 386 (462)
T ss_dssp HHHTTSS
T ss_pred HHHhccC
Confidence 9886543
No 10
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.88 E-value=3e-22 Score=177.04 Aligned_cols=160 Identities=24% Similarity=0.314 Sum_probs=115.7
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
..+ |+|.+|||||||+|+|.+...+.+++.+++|++.....+..++..+.+|||||+.. ....++.........++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~~~~~~~~ 83 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE-ASDEVERIGIERAWQEIEQ 83 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSC-CSSHHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCccc-chhHHHHHHHHHHHHHHHh
Confidence 345 99999999999999999988777788999998887777788888899999999743 1122333334445566889
Q ss_pred cceEEEEeeCCCCCChHHHHHHHHhc-cCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 192 ADCIVVLVDACKAPERIDEILEEGVG-DHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 192 aDvillVvD~~~~~~~~~~~l~~~l~-~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
+|++++|+|+++........++..+. ....++|+++|+||+|+..... . +... ...+++++||++|.|+++|
T Consensus 84 ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~-~~~~-~~~~~~~~SA~~g~gv~~l 156 (172)
T 2gj8_A 84 ADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL-----G-MSEV-NGHALIRLSARTGEGVDVL 156 (172)
T ss_dssp CSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----E-EEEE-TTEEEEECCTTTCTTHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh-----h-hhhc-cCCceEEEeCCCCCCHHHH
Confidence 99999999998766432332322222 2124689999999999853210 0 0111 2347899999999999999
Q ss_pred HHHHHhhCCC
Q 015293 271 RDWILTKLPL 280 (409)
Q Consensus 271 ~~~L~~~l~~ 280 (409)
+++|.+.+..
T Consensus 157 ~~~l~~~~~~ 166 (172)
T 2gj8_A 157 RNHLKQSMGF 166 (172)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHhhh
Confidence 9999988753
No 11
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.87 E-value=4.6e-25 Score=229.42 Aligned_cols=226 Identities=18% Similarity=0.210 Sum_probs=155.4
Q ss_pred EEecCCCChHHHHHHHhCCcce--eeecCCCceEEEEEEEE------------------------------------eCC
Q 015293 116 VLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGIC------------------------------------SGP 157 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~--~v~~~~~tt~~~~~~~~------------------------------------~~~ 157 (409)
|+|.+|+|||||+|+|+|.+++ .++..++|++......- ...
T Consensus 70 vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~~~~~~ 149 (550)
T 2qpt_A 70 VAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQLP 149 (550)
T ss_dssp EEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEEEEECC
T ss_pred EECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccceEEecc
Confidence 9999999999999999999876 57778887653221110 000
Q ss_pred C---eeEEEEeCCCCchhhhhhHhHH--HHHHHHHhhcCcceEEEEeeCCCC-CChHHHHHHHHhccCCCCCCEEEEEec
Q 015293 158 E---YQMILYDTPGIIEKKIHMLDSM--MMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGDHKDKLPILLVLNK 231 (409)
Q Consensus 158 ~---~~i~liDtpG~~~~~~~~l~~~--~~~~~~~~~~~aDvillVvD~~~~-~~~~~~~l~~~l~~~~~~~p~ilvlNK 231 (409)
+ .++.||||||+.......+... +...+..++..+|++|+|+|+++. .......++..+.. .+.|+++|+||
T Consensus 150 ~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~pvilVlNK 227 (550)
T 2qpt_A 150 NQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG--HEDKIRVVLNK 227 (550)
T ss_dssp CHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT--CGGGEEEEEEC
T ss_pred ccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh--cCCCEEEEEEC
Confidence 0 3689999999854221112111 334455667899999999999874 45555566666655 56899999999
Q ss_pred CCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCccccCchHHHHHHHHHHHHHHhhc
Q 015293 232 KDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQY 311 (409)
Q Consensus 232 ~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~~ 311 (409)
+|+....++......+.. .+..++++|.... +..+++.+++... +.+.+++.+|+ |++|..+
T Consensus 228 ~Dl~~~~el~~~~~~l~~--s~~~i~~vs~l~~-------------~~~~~~~~~~~~~-~~~~~~~~~E~--e~l~~~l 289 (550)
T 2qpt_A 228 ADMVETQQLMRVYGALMW--ALGKVVGTPEVLR-------------VYIGSFWSQPLLV-PDNRRLFELEE--QDLFRDI 289 (550)
T ss_dssp GGGSCHHHHHHHHHHHHH--HHHHHHCCSSCCC-------------EEESCCSSSCCSS-CTTHHHHHHHH--HHHHHHH
T ss_pred CCccCHHHHHHHHHHhhc--chhheeechHhhh-------------hccccCCCCcccC-CCCHHHHHHHH--HHHHHHh
Confidence 999987666555444320 1223444553221 1334555555544 68899999998 8999886
Q ss_pred CCCCCceeEEE-EEEEEecCCCeeEEEEEEEEeeCCcceEEeecCCchHHHHH
Q 015293 312 RNEVPYACQVN-VVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKALKLLA 363 (409)
Q Consensus 312 ~~eipys~~v~-v~~~~~~~~~~~~i~~~i~v~~~~~~~iliG~~G~~ik~i~ 363 (409)
+++||++.++ +..+..+. ....|.+.|+|++++|+.|+||++|...+.|.
T Consensus 290 -~elP~~~~v~~i~~~~~~~-~~~~I~a~I~v~~~sqk~i~iGk~g~~~~li~ 340 (550)
T 2qpt_A 290 -QGLPRHAALRKLNDLVKRA-RLVRVHAYIISYLKKEMPTVFGKENKKKQLIL 340 (550)
T ss_dssp -HTTGGGHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHH
T ss_pred -hhccHHHHHHHHHHHhccC-CeEEEEEEEEEeecccceeEECCchHHHHHHH
Confidence 8999999998 45555432 45668888999999999999999998877664
No 12
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.87 E-value=1.2e-22 Score=206.06 Aligned_cols=219 Identities=25% Similarity=0.344 Sum_probs=138.1
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
|+|+||||||||+|+|++...+++++.+|+|++.....+.+++..+.+|||||+.... ..+...+...+..++..||++
T Consensus 8 ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~-~~~~~~~~~~~~~~~~~ad~i 86 (436)
T 2hjg_A 8 IVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD-EPFLAQIRQQAEIAMDEADVI 86 (436)
T ss_dssp EECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC----------CHHHHHHHHHHHHHHHCSEE
T ss_pred EECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcc-hhHHHHHHHHHHHHHHhCCEE
Confidence 9999999999999999999988899999999999999999999999999999975322 235556667778889999999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~ 275 (409)
|+|+|++.+....+.++...++. .++|+++|+||+|+..... ...+.+ . .++.+++++||++|.|+++|+++|.
T Consensus 87 l~vvD~~~~~~~~d~~~~~~l~~--~~~pvilv~NK~D~~~~~~--~~~~~~-~-lg~~~~~~iSA~~g~gv~~L~~~i~ 160 (436)
T 2hjg_A 87 IFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA--NIYDFY-S-LGFGEPYPISGTHGLGLGDLLDAVA 160 (436)
T ss_dssp EEEEETTTCSCHHHHHHHHHHTT--CCSCEEEEEECCCC-------CCCSSG-G-GSSCCCEECBTTTTBTHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCccchh--hHHHHH-H-cCCCCeEEEeCcCCCChHHHHHHHH
Confidence 99999999888888888887776 7899999999999875321 111111 1 1344689999999999999999999
Q ss_pred hhCCCCCCCCCCccccCchHHHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEe------cCC-CeeEEEEEEEEeeCCcc
Q 015293 276 TKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKT------RPT-AKDFIQVEIVVEKNSQK 348 (409)
Q Consensus 276 ~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~~~~eipys~~v~v~~~~~------~~~-~~~~i~~~i~v~~~~~~ 348 (409)
+.+++.+.... .+.+. ++....++++|+||.++...... .++ +...+. ..++.+++.
T Consensus 161 ~~l~~~~~~~~----~~~~~----------ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~--~~~~~~~~~ 224 (436)
T 2hjg_A 161 EHFKNIPETKY----NEEVI----------QFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVD--TSFTYNQQE 224 (436)
T ss_dssp HTGGGCCSSCC----CTTCE----------EEEEECSTTSSHHHHHHHHHTSTTEEEC---------CC--EEEEETTEE
T ss_pred HhcCccccccc----cccCc----------EEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeE--EEEEECCeE
Confidence 98874321100 00100 11223455666666554432211 122 222222 334567788
Q ss_pred eEEeecCCc
Q 015293 349 IILIGKGGK 357 (409)
Q Consensus 349 ~iliG~~G~ 357 (409)
..++++.|.
T Consensus 225 ~~l~DT~G~ 233 (436)
T 2hjg_A 225 FVIVDTAGM 233 (436)
T ss_dssp EEETTHHHH
T ss_pred EEEEECCCc
Confidence 899999884
No 13
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.87 E-value=3.2e-21 Score=172.07 Aligned_cols=162 Identities=28% Similarity=0.371 Sum_probs=116.8
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh----hhHhHHHHHHHHH
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI----HMLDSMMMKNVRS 187 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~----~~l~~~~~~~~~~ 187 (409)
.++ ++|.+|||||||+|+|++.....+++.+++|........ +.++.+|||||+..... ......+......
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV---NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFK 100 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE---TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE---CCcEEEEECCCCccccCChhhHHHHHHHHHHHHh
Confidence 345 999999999999999999987778888888877655443 35789999999642111 1111122333334
Q ss_pred hhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHH---HhcCCCceEEEcccCCC
Q 015293 188 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWY---EKFTDVDEVIPVSAKYG 264 (409)
Q Consensus 188 ~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~---~~~~~~~~iv~iSA~~g 264 (409)
....+|++++|+|++.+.......+...+.. .+.|+++|+||+|+..........+.. ....+..+++++||++|
T Consensus 101 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 178 (195)
T 3pqc_A 101 NRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS--LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTG 178 (195)
T ss_dssp HCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTC
T ss_pred cCcCceEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCC
Confidence 4466799999999988776666666666655 579999999999998655443332222 22223458999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 015293 265 HGVEDIRDWILTKLP 279 (409)
Q Consensus 265 ~gi~~L~~~L~~~l~ 279 (409)
.|+++|+++|.+.++
T Consensus 179 ~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 179 EGISELLDLISTLLK 193 (195)
T ss_dssp TTHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999998765
No 14
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.87 E-value=6.2e-22 Score=186.82 Aligned_cols=164 Identities=23% Similarity=0.301 Sum_probs=116.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhh----hHhHHHHHHHHHhhcC
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH----MLDSMMMKNVRSAGIN 191 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~----~l~~~~~~~~~~~~~~ 191 (409)
++|.||||||||+|+|+|.+. .+++.|++|.+...+.+..++..+.+|||||+...... .....+.+... ....
T Consensus 6 lvG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~-~~~~ 83 (256)
T 3iby_A 6 LIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV-IDLE 83 (256)
T ss_dssp EEESTTSSHHHHHHHHHTTSE-EEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHH-HHSC
T ss_pred EECCCCCCHHHHHHHHHCCCC-CccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH-hhCC
Confidence 999999999999999999874 58899999999999999988899999999997542211 33333322222 1278
Q ss_pred cceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHH
Q 015293 192 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 271 (409)
Q Consensus 192 aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~ 271 (409)
+|++++|+|+++. .....+...+.. .+.|+++|+||+|+............+....+ .+++++||++|.|+++|+
T Consensus 84 ~d~vi~VvDas~~--~~~~~l~~~l~~--~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg-~~vi~~SA~~g~gi~el~ 158 (256)
T 3iby_A 84 YDCIINVIDACHL--ERHLYLTSQLFE--LGKPVVVALNMMDIAEHRGISIDTEKLESLLG-CSVIPIQAHKNIGIPALQ 158 (256)
T ss_dssp CSEEEEEEEGGGH--HHHHHHHHHHTT--SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC-SCEEECBGGGTBSHHHHH
T ss_pred CCEEEEEeeCCCc--hhHHHHHHHHHH--cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC-CCEEEEECCCCCCHHHHH
Confidence 9999999999873 222334444444 57999999999998643221111112222223 489999999999999999
Q ss_pred HHHHhhCCCCCCCCCC
Q 015293 272 DWILTKLPLGPAYYPK 287 (409)
Q Consensus 272 ~~L~~~l~~~~~~~~~ 287 (409)
++|.+. ......|+.
T Consensus 159 ~~i~~~-~~~~~~y~~ 173 (256)
T 3iby_A 159 QSLLHC-SQKIKPLKL 173 (256)
T ss_dssp HHHHTC-CSCCCCCCC
T ss_pred HHHHhh-hcCcccCCH
Confidence 999998 433324444
No 15
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.87 E-value=1.6e-22 Score=195.75 Aligned_cols=199 Identities=20% Similarity=0.246 Sum_probs=133.5
Q ss_pred EEecCCCChHHHHHHHhCCcc-----eeeecCC---CceEEE--------------------------------------
Q 015293 116 VLGKPNVGKSTLANQMIGQKL-----SIVTNKP---QTTRHR-------------------------------------- 149 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~-----~~v~~~~---~tt~~~-------------------------------------- 149 (409)
|+|.+|+|||||+|+|+|.++ .+++..| .++++.
T Consensus 29 vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 108 (315)
T 1jwy_B 29 VVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDR 108 (315)
T ss_dssp EEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHHHCC-
T ss_pred EEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHHHHHHHH
Confidence 999999999999999999987 4455555 333320
Q ss_pred EE-------------EEEeCCCeeEEEEeCCCCchhh----hhhHhHHHHHHHHHhhcCcceEEEEeeC-CCCCC-hHHH
Q 015293 150 IL-------------GICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGINADCIVVLVDA-CKAPE-RIDE 210 (409)
Q Consensus 150 ~~-------------~~~~~~~~~i~liDtpG~~~~~----~~~l~~~~~~~~~~~~~~aDvillVvD~-~~~~~-~~~~ 210 (409)
.. .+....+.++.||||||+...+ ...+...+...+..++..+|++++|+|+ +.+.. ....
T Consensus 109 ~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~ 188 (315)
T 1jwy_B 109 MTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDAL 188 (315)
T ss_dssp -------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHH
T ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHH
Confidence 00 0133345789999999985422 1234555677788889999999999997 43333 2223
Q ss_pred HHHHHhccCCCCCCEEEEEecCCCCChhh-HHHHHHH-HHhc-CCCceEEEcccCC---CCCHHHHHHHHHhhCCCCCCC
Q 015293 211 ILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEW-YEKF-TDVDEVIPVSAKY---GHGVEDIRDWILTKLPLGPAY 284 (409)
Q Consensus 211 ~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~-~~~~~~~-~~~~-~~~~~iv~iSA~~---g~gi~~L~~~L~~~l~~~~~~ 284 (409)
.+...+.. .+.|+++|+||+|+..... ....... .... .++.+++++||.+ +.|+.++++.+.+.++.+++
T Consensus 189 ~i~~~~~~--~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~- 265 (315)
T 1jwy_B 189 QLAKEVDP--EGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPI- 265 (315)
T ss_dssp HHHHHHCS--SCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTT-
T ss_pred HHHHHhCC--CCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCCc-
Confidence 45555555 6799999999999986443 1222111 0011 2334556666666 89999999999999988877
Q ss_pred CCCccccCchHHHHHHHHHHHHHHhhcCCCCCcee
Q 015293 285 YPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYAC 319 (409)
Q Consensus 285 ~~~~~~t~~~~r~~i~EiiRe~i~~~~~~eipys~ 319 (409)
|+ +..++.+.+++..+ +|++++.++++++||..
T Consensus 266 ~~-~~~~~~~~~~l~~~-lre~l~~~~~~elP~~~ 298 (315)
T 1jwy_B 266 YK-SIANRSGTAYLSKT-LNKLLMFHIRDTLPDLK 298 (315)
T ss_dssp GG-GSGGGCSHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred cc-cchhccCHHHHHHH-HHHHHHHHHHHHhHHHH
Confidence 44 45666777777765 99999999999999864
No 16
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=3.7e-22 Score=202.35 Aligned_cols=165 Identities=22% Similarity=0.277 Sum_probs=117.6
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh--hhHhHHHHHHHHHhhc
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRSAGI 190 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~--~~l~~~~~~~~~~~~~ 190 (409)
.+ ++|+||||||||+|+|++.....+++.++||++.....+..++..+.||||||+..... ..++....-....+++
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~ 256 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAID 256 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHH
Confidence 44 99999999999999999999888899999999988888888889999999999643211 1223333333445678
Q ss_pred CcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHh---cCCCceEEEcccCCCC
Q 015293 191 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEK---FTDVDEVIPVSAKYGH 265 (409)
Q Consensus 191 ~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~---~~~~~~iv~iSA~~g~ 265 (409)
.||++++|+|++++...++..+...+.. .++|+++|+||+|+..... ..+....+.. .....+++++||++|.
T Consensus 257 ~ad~~llv~D~~~~~s~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~ 334 (436)
T 2hjg_A 257 RSEVVAVVLDGEEGIIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKK 334 (436)
T ss_dssp HCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCT
T ss_pred hCCEEEEEEcCCcCCcHHHHHHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCC
Confidence 8999999999999887777666665555 6899999999999976432 2222222221 1234589999999999
Q ss_pred CHHHHHHHHHhhCCC
Q 015293 266 GVEDIRDWILTKLPL 280 (409)
Q Consensus 266 gi~~L~~~L~~~l~~ 280 (409)
|+++|++.+.+.+..
T Consensus 335 ~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 335 RIHTLMPAIIKASEN 349 (436)
T ss_dssp TGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999887653
No 17
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.86 E-value=7.1e-21 Score=175.71 Aligned_cols=166 Identities=18% Similarity=0.202 Sum_probs=109.3
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
..+ |+|.+|||||||+|+|++..+. +.+.+++|++........++..+.||||||+...................+..
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 108 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHI 108 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhcc
Confidence 345 9999999999999999999876 67788888888877777778899999999974321111111111222334678
Q ss_pred cceEEEEeeCCCCCC---hHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHH----HHHHHHHhcC-CCceEEEcccCC
Q 015293 192 ADCIVVLVDACKAPE---RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA----KKLEWYEKFT-DVDEVIPVSAKY 263 (409)
Q Consensus 192 aDvillVvD~~~~~~---~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~----~~~~~~~~~~-~~~~iv~iSA~~ 263 (409)
+|++++|+|++++.. .....+...+.....+.|+++|+||+|+.....+. .....+.... ...+++++||++
T Consensus 109 ~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 188 (228)
T 2qu8_A 109 NGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLT 188 (228)
T ss_dssp SEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTT
T ss_pred ccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 899999999987653 11223333333322479999999999997543221 1222222222 235899999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 015293 264 GHGVEDIRDWILTKLP 279 (409)
Q Consensus 264 g~gi~~L~~~L~~~l~ 279 (409)
|.|+++|+++|.+.+.
T Consensus 189 g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 189 GVGVEQAKITACELLK 204 (228)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998764
No 18
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.86 E-value=7.7e-21 Score=170.15 Aligned_cols=162 Identities=23% Similarity=0.299 Sum_probs=104.9
Q ss_pred eeE-EEecCCCChHHHHHHHhCCc-ceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhh-HhH---HHHHHHH
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM-LDS---MMMKNVR 186 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~-~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~-l~~---~~~~~~~ 186 (409)
..+ ++|.+|||||||+|+|++.. ...+++.+++|.+...... +..+.+|||||+....... ... .+.....
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIETYI 100 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHHHHHHHHHH
Confidence 344 99999999999999999987 4556778888876554433 2479999999974321100 011 1122222
Q ss_pred HhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCceEEEcccCC
Q 015293 187 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 263 (409)
Q Consensus 187 ~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~---~~~~~~iv~iSA~~ 263 (409)
.....+|++++|+|++++.......+...+.. .+.|+++|+||+|+.....+......+.. .....+++++||++
T Consensus 101 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 178 (195)
T 1svi_A 101 TTREELKAVVQIVDLRHAPSNDDVQMYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSET 178 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTT
T ss_pred hhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccC
Confidence 23345599999999998877666666666655 67999999999999876655433322222 12345899999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 015293 264 GHGVEDIRDWILTKLP 279 (409)
Q Consensus 264 g~gi~~L~~~L~~~l~ 279 (409)
|.|+++|+++|.+.++
T Consensus 179 ~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 179 KKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CTTHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999987654
No 19
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.86 E-value=1e-22 Score=191.93 Aligned_cols=180 Identities=14% Similarity=0.114 Sum_probs=125.1
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCC-ceEEEEEEEEeCCCeeEEEEeCCCCchhhh--hhHhHHHHHHHHHh
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQ-TTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRSA 188 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~-tt~~~~~~~~~~~~~~i~liDtpG~~~~~~--~~l~~~~~~~~~~~ 188 (409)
..+ |+|++|||||||+|+|++......+..+. +|++.....+.+++.++.||||||+.+... ......+.+.+..+
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~ 102 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLS 102 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhc
Confidence 344 99999999999999999988766665565 788888778888899999999999754221 11112335556667
Q ss_pred hcCcceEEEEeeCCCCCChHHHHHHHHhccCC---CCCCEEEEEe-cCCCCChhhHHH---------HHHHHHhcCC---
Q 015293 189 GINADCIVVLVDACKAPERIDEILEEGVGDHK---DKLPILLVLN-KKDLIKPGEIAK---------KLEWYEKFTD--- 252 (409)
Q Consensus 189 ~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~---~~~p~ilvlN-K~Dl~~~~~~~~---------~~~~~~~~~~--- 252 (409)
+..+|++|+|+|+++ .......++..+.... ...|.++|+| |+|+.... +.. ..........
T Consensus 103 ~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~ 180 (260)
T 2xtp_A 103 APGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAACGGRIC 180 (260)
T ss_dssp TTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTTTCEE
T ss_pred CCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHhCCeEE
Confidence 889999999999986 5555554444433310 1467787777 99997532 222 1112222221
Q ss_pred -CceEEEcccCCCCCHHHHHHHHHhhCCCCC-CCCCCccccCchH
Q 015293 253 -VDEVIPVSAKYGHGVEDIRDWILTKLPLGP-AYYPKDIVSEHPE 295 (409)
Q Consensus 253 -~~~iv~iSA~~g~gi~~L~~~L~~~l~~~~-~~~~~~~~t~~~~ 295 (409)
+.+ +++||++|.|+++|+++|.+.++..+ +.|+.+..++.+.
T Consensus 181 ~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 224 (260)
T 2xtp_A 181 AFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQR 224 (260)
T ss_dssp ECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHC--
T ss_pred EecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHH
Confidence 222 78999999999999999999988766 6777776666665
No 20
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.86 E-value=3e-22 Score=204.70 Aligned_cols=157 Identities=25% Similarity=0.342 Sum_probs=122.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
|+|+||||||||+|+|++.+.+++++.++||++.....+..++..+.||||||+.....+.++..+++.+..++..||++
T Consensus 248 ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~v 327 (482)
T 1xzp_A 248 IVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIV 327 (482)
T ss_dssp EECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEE
T ss_pred EECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEE
Confidence 99999999999999999998888999999999998888888899999999999852232333333445556678899999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~ 275 (409)
|+|+|++++.......+++.+ .++|+++|+||+|+.............. ...+++++||++|.|+++|+++|.
T Consensus 328 l~VvD~s~~~s~~~~~il~~l----~~~piivV~NK~DL~~~~~~~~~~~~~~---~~~~~i~iSAktg~Gi~eL~~~l~ 400 (482)
T 1xzp_A 328 LFVLDASSPLDEEDRKILERI----KNKRYLVVINKVDVVEKINEEEIKNKLG---TDRHMVKISALKGEGLEKLEESIY 400 (482)
T ss_dssp EEEEETTSCCCHHHHHHHHHH----TTSSEEEEEEECSSCCCCCHHHHHHHHT---CSTTEEEEEGGGTCCHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHh----cCCCEEEEEECcccccccCHHHHHHHhc---CCCcEEEEECCCCCCHHHHHHHHH
Confidence 999999887765555555544 4689999999999975422222222221 224789999999999999999999
Q ss_pred hhCC
Q 015293 276 TKLP 279 (409)
Q Consensus 276 ~~l~ 279 (409)
+.+.
T Consensus 401 ~~~~ 404 (482)
T 1xzp_A 401 RETQ 404 (482)
T ss_dssp HHTH
T ss_pred HHHh
Confidence 8764
No 21
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=2.2e-20 Score=166.49 Aligned_cols=161 Identities=17% Similarity=0.211 Sum_probs=107.9
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
..+ ++|.+|||||||+|+|++..+....++.+.+.. .+..++..+.+|||||. ..+..+. ..++..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~Dt~G~--~~~~~~~-------~~~~~~ 83 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQ--ESLRSSW-------NTYYTN 83 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCE----EEEETTEEEEEEECCC------CGGG-------HHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceE----EEEECCEEEEEEECCCC--HhHHHHH-------HHHhcC
Confidence 345 999999999999999998776655555554332 23346789999999995 3333332 234689
Q ss_pred cceEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHHhc---CCCceEEEcccCCCC
Q 015293 192 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKYGH 265 (409)
Q Consensus 192 aDvillVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~---~~~~~iv~iSA~~g~ 265 (409)
+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+....+... ....+++++||++|.
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (187)
T 1zj6_A 84 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGE 163 (187)
T ss_dssp CCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCc
Confidence 99999999998864 33444555544421 2579999999999997643333333333211 122478999999999
Q ss_pred CHHHHHHHHHhhCCCCCCCCC
Q 015293 266 GVEDIRDWILTKLPLGPAYYP 286 (409)
Q Consensus 266 gi~~L~~~L~~~l~~~~~~~~ 286 (409)
|+++++++|.+.+...++..|
T Consensus 164 gi~~l~~~l~~~~~~~~~~~~ 184 (187)
T 1zj6_A 164 GLCQGLEWMMSRLKIRLEHHH 184 (187)
T ss_dssp THHHHHHHHHHHHCC------
T ss_pred CHHHHHHHHHHHHHHHhhhhc
Confidence 999999999998876655444
No 22
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.85 E-value=6.8e-21 Score=193.23 Aligned_cols=165 Identities=25% Similarity=0.321 Sum_probs=116.5
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh---hhHhHHHHHHHHHhh
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI---HMLDSMMMKNVRSAG 189 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~---~~l~~~~~~~~~~~~ 189 (409)
.+ |+|+||||||||+|+|+|.....+++.++||++...+.+..++..+.+|||||+..... ..++.........++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 44 99999999999999999999888999999999998888888889999999999743111 001110111234567
Q ss_pred cCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHh---cCCCceEEEcccCCC
Q 015293 190 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEK---FTDVDEVIPVSAKYG 264 (409)
Q Consensus 190 ~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~---~~~~~~iv~iSA~~g 264 (409)
..+|++++|+|++.+....+..+...+.. .++|+++|+||+|+..... .......+.. .....+++++||++|
T Consensus 262 ~~ad~vllv~d~~~~~~~~~~~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 339 (439)
T 1mky_A 262 EKADVVVIVLDATQGITRQDQRMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKG 339 (439)
T ss_dssp HHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTT
T ss_pred hhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCC
Confidence 78999999999998877666666665555 6899999999999976432 2222222211 123458999999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 015293 265 HGVEDIRDWILTKLPL 280 (409)
Q Consensus 265 ~gi~~L~~~L~~~l~~ 280 (409)
.|+++|++.+.+.+..
T Consensus 340 ~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 340 WNIDRMIDAMNLAYAS 355 (439)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999887653
No 23
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.85 E-value=1.4e-20 Score=169.98 Aligned_cols=153 Identities=21% Similarity=0.194 Sum_probs=102.4
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
..+ ++|++|||||||+|+|.+..+....++.+.+. ..+..++..+.+|||||. ..+..+ +..++..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~----~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~~~ 92 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS----EELTIAGMTFTTFDLGGH--IQARRV-------WKNYLPA 92 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC------CCCCCSC----EEEEETTEEEEEEEECC------CCG-------GGGGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee----EEEEECCEEEEEEECCCc--HhhHHH-------HHHHHhc
Confidence 345 99999999999999999988765555555442 344566789999999994 333332 3345789
Q ss_pred cceEEEEeeCCCCC--ChHHHHHHHHhcc-CCCCCCEEEEEecCCCCChhhHHHHHHHHHhc---------------CCC
Q 015293 192 ADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---------------TDV 253 (409)
Q Consensus 192 aDvillVvD~~~~~--~~~~~~l~~~l~~-~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~---------------~~~ 253 (409)
+|++++|+|++++. .....++...+.. ...+.|+++|+||+|+.......+....+... ...
T Consensus 93 ~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1f6b_A 93 INGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARP 172 (198)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCce
Confidence 99999999998764 2333444444432 12579999999999997533333333333321 123
Q ss_pred ceEEEcccCCCCCHHHHHHHHHhhC
Q 015293 254 DEVIPVSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 254 ~~iv~iSA~~g~gi~~L~~~L~~~l 278 (409)
.++++|||++|.|+++++++|.+.+
T Consensus 173 ~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 173 LEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHhc
Confidence 5799999999999999999998764
No 24
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.85 E-value=1.8e-22 Score=201.91 Aligned_cols=245 Identities=19% Similarity=0.202 Sum_probs=129.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeC---------------------C---CeeEEEEeCCCCch
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---------------------P---EYQMILYDTPGIIE 171 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~---------------------~---~~~i~liDtpG~~~ 171 (409)
|+|.||||||||+|+|++.+ +.++++|+||++...+.... + ..++.||||||+..
T Consensus 5 ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~~~ 83 (397)
T 1wxq_A 5 VVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVP 83 (397)
T ss_dssp EEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC----
T ss_pred EECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCccc
Confidence 89999999999999999998 67889999999877765321 1 35799999999753
Q ss_pred hhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCC----------ChHH--------------------------------
Q 015293 172 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP----------ERID-------------------------------- 209 (409)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~----------~~~~-------------------------------- 209 (409)
... ....+...+..+++.||++++|+|++++. .+..
T Consensus 84 ~a~--~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~~~~ 161 (397)
T 1wxq_A 84 GAH--EGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQK 161 (397)
T ss_dssp -------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTTSSC
T ss_pred chh--hhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcC
Confidence 211 11122233446678999999999998751 0000
Q ss_pred ------------------------------------------HHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHH
Q 015293 210 ------------------------------------------EILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWY 247 (409)
Q Consensus 210 ------------------------------------------~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~ 247 (409)
..+...+.. ..+|+++|+||+|+.....+....+.+
T Consensus 162 ~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~l~~~~~~--~~kP~i~v~NK~D~~~~~~l~~l~~~~ 239 (397)
T 1wxq_A 162 IKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRR--VNKPMVIAANKADAASDEQIKRLVREE 239 (397)
T ss_dssp CCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHHH--HHSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHhcccCCCHHHHHHHHHHhccCCccccCCHHHHHHHHHhhhc--cCCCEEEEEeCccccchHHHHHHHHHH
Confidence 000000000 248999999999987443344444433
Q ss_pred HhcCCCceEEEcccCCCCCHHHHHH-HHHhhCCCCCCCCCCccccCchHHHHHHHHHHHHHHhhcCCCCC---------c
Q 015293 248 EKFTDVDEVIPVSAKYGHGVEDIRD-WILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVP---------Y 317 (409)
Q Consensus 248 ~~~~~~~~iv~iSA~~g~gi~~L~~-~L~~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~~~~eip---------y 317 (409)
... + .+++++||+.+.|+.+|++ .|.++++.+++.|+.+.+++++.+ +.|++||++|..+. +-+ |
T Consensus 240 ~~~-~-~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l~~~~~~--~~e~ire~~l~~~g-~~g~~~~i~~~~~ 314 (397)
T 1wxq_A 240 EKR-G-YIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKR--ALMVIKEKVLDRFG-STGVQEVINRVVF 314 (397)
T ss_dssp HHT-T-CEEEEECHHHHHHHHSCSSSCCCCSCC-------------------CTTHHHHHHTSSSS-SCSHHHHHHHHHH
T ss_pred hhc-C-CcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccCCHHHHH--HHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 322 2 4799999999999999988 889999999999999998887766 67899988877665 211 2
Q ss_pred eeEEEEEEEEecCCCeeEEEEEEEEeeCCc--ceEEeecCCchHHHHHHHHHHHHHHHcCCc
Q 015293 318 ACQVNVVSYKTRPTAKDFIQVEIVVEKNSQ--KIILIGKGGKALKLLATAARLDIEDFLQKK 377 (409)
Q Consensus 318 s~~v~v~~~~~~~~~~~~i~~~i~v~~~~~--~~iliG~~G~~ik~i~~~ar~~l~~~~~~~ 377 (409)
...--+..|...+..... ...+. ...++-++|.++.+++...-.++++-|-+-
T Consensus 315 ~~L~li~vft~~~~~~~~-------~~~g~~~~~~~~l~~G~t~~d~a~~iH~d~~~~f~~a 369 (397)
T 1wxq_A 315 DLLKLIPVYPVHDENKLT-------DQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYA 369 (397)
T ss_dssp TTSCEEEEEEESCC------------CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTEEEE
T ss_pred HHhCCeEEEeeccccccc-------CCcCcccceeEEeCCCCCHHHHHHHHhHHHHhhhhhh
Confidence 221112222211100000 01120 123333789999999999999999877543
No 25
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.85 E-value=7.3e-21 Score=179.66 Aligned_cols=157 Identities=22% Similarity=0.289 Sum_probs=112.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|.||||||||+|+|+|.... +++.|++|.+...+.+..++..+.+|||||............+...... ...+|++
T Consensus 10 lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~-~~~~d~i 87 (258)
T 3a1s_A 10 LAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL-KGDADLV 87 (258)
T ss_dssp EECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH-HSCCSEE
T ss_pred EECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh-hcCCCEE
Confidence 9999999999999999998865 7889999999888888888899999999997542222222222222221 2689999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~ 275 (409)
++|+|+++.. ....++. .+.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.|+++|+++|.
T Consensus 88 i~V~D~t~~~-~~~~~~~-~l~~--~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg-~~vi~~SA~~g~gi~el~~~i~ 162 (258)
T 3a1s_A 88 ILVADSVNPE-QSLYLLL-EILE--MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG-IPVVFTSSVTGEGLEELKEKIV 162 (258)
T ss_dssp EEEEETTSCH-HHHHHHH-HHHT--TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC-SCEEECCTTTCTTHHHHHHHHH
T ss_pred EEEeCCCchh-hHHHHHH-HHHh--cCCCEEEEEECcCCCCccchHHHHHHHHHHcC-CCEEEEEeeCCcCHHHHHHHHH
Confidence 9999998743 2223333 3333 57999999999998533211110111222223 3899999999999999999999
Q ss_pred hhCC
Q 015293 276 TKLP 279 (409)
Q Consensus 276 ~~l~ 279 (409)
+.++
T Consensus 163 ~~~~ 166 (258)
T 3a1s_A 163 EYAQ 166 (258)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8764
No 26
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.85 E-value=5.3e-20 Score=163.67 Aligned_cols=155 Identities=24% Similarity=0.343 Sum_probs=109.1
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
...+ ++|.+|||||||+++|.+..+..+.++.+.+.. .+..++..+.+|||||. ..+.. .+..++.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~----~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~~~~ 82 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQSQGFKLNVWDIGGQ--RKIRP-------YWRSYFE 82 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEE----EEEETTEEEEEEECSSC--GGGHH-------HHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEE----EEEECCEEEEEEECCCC--HHHHH-------HHHHHhC
Confidence 3445 999999999999999999887666666664432 23445789999999995 33222 2345578
Q ss_pred CcceEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCceEEEcccCCC
Q 015293 191 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYG 264 (409)
Q Consensus 191 ~aDvillVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~---~~~~~~iv~iSA~~g 264 (409)
.+|++++|+|++++. .....++...+... ..+.|+++|+||+|+............+.. .....+++++||++|
T Consensus 83 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 162 (181)
T 1fzq_A 83 NTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTG 162 (181)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCC
Confidence 999999999998754 22334444444331 257899999999999765443333333221 112247899999999
Q ss_pred CCHHHHHHHHHhhCC
Q 015293 265 HGVEDIRDWILTKLP 279 (409)
Q Consensus 265 ~gi~~L~~~L~~~l~ 279 (409)
.|+++++++|.+.+.
T Consensus 163 ~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 163 EGVQDGMNWVCKNVN 177 (181)
T ss_dssp TTHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998775
No 27
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.85 E-value=2.6e-21 Score=197.28 Aligned_cols=166 Identities=20% Similarity=0.250 Sum_probs=123.1
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh--hhHhHHHHHHHHHhh
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRSAG 189 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~--~~l~~~~~~~~~~~~ 189 (409)
..+ ++|.+|+|||||+|+|++.....+++.++||++.....+..++..+.||||||+..... ...+.........++
T Consensus 196 ~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~ 275 (456)
T 4dcu_A 196 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAI 275 (456)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHH
T ss_pred ceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHH
Confidence 344 99999999999999999998888999999999988777888888999999999754210 112222333445567
Q ss_pred cCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChh--hHHHHHHHHHhc---CCCceEEEcccCCC
Q 015293 190 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKF---TDVDEVIPVSAKYG 264 (409)
Q Consensus 190 ~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~--~~~~~~~~~~~~---~~~~~iv~iSA~~g 264 (409)
..||++|+|+|++.+...++..+...+.. .++|+++|+||+|+.... ...+..+.+... .+..+++++||++|
T Consensus 276 ~~ad~~llviD~~~~~~~~~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 353 (456)
T 4dcu_A 276 DRSEVVAVVLDGEEGIIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTK 353 (456)
T ss_dssp HHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTC
T ss_pred hhCCEEEEEEeCCCCcCHHHHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCC
Confidence 89999999999999888888888777766 689999999999997532 223333333332 23468999999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 015293 265 HGVEDIRDWILTKLPL 280 (409)
Q Consensus 265 ~gi~~L~~~L~~~l~~ 280 (409)
.|+++|++.|.+.+..
T Consensus 354 ~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 354 KRIHTLMPAIIKASEN 369 (456)
T ss_dssp TTGGGHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999987653
No 28
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.85 E-value=1.8e-21 Score=185.39 Aligned_cols=161 Identities=26% Similarity=0.302 Sum_probs=116.0
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh----hhHhHHHHHHHHHh
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI----HMLDSMMMKNVRSA 188 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~----~~l~~~~~~~~~~~ 188 (409)
.+ ++|.+|||||||+|+|+|... .+++.+++|.+.....+...+..+.+|||||+..... ..++..+... ...
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~-~~~ 82 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH-YIL 82 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHH-HHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHH-HHh
Confidence 44 999999999999999999984 6899999999999999998889999999999754221 2233332222 223
Q ss_pred hcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 189 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 189 ~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
...+|++++|+|+++.. . ...+...+.. .+.|+++|+||+|+............+....+ .+++++||++|.|++
T Consensus 83 ~~~~d~ii~VvD~~~~~-~-~~~~~~~l~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg-~~~i~~SA~~g~gi~ 157 (274)
T 3i8s_A 83 SGDADLLINVVDASNLE-R-NLYLTLQLLE--LGIPCIVALNMLDIAEKQNIRIEIDALSARLG-CPVIPLVSTRGRGIE 157 (274)
T ss_dssp HTCCSEEEEEEEGGGHH-H-HHHHHHHHHH--HTCCEEEEEECHHHHHHTTEEECHHHHHHHHT-SCEEECCCGGGHHHH
T ss_pred hcCCCEEEEEecCCChH-H-HHHHHHHHHh--cCCCEEEEEECccchhhhhHHHHHHHHHHhcC-CCEEEEEcCCCCCHH
Confidence 47999999999998632 2 2223333333 47999999999998643221111111222223 479999999999999
Q ss_pred HHHHHHHhhCCCC
Q 015293 269 DIRDWILTKLPLG 281 (409)
Q Consensus 269 ~L~~~L~~~l~~~ 281 (409)
+|+++|.+.++..
T Consensus 158 el~~~i~~~~~~~ 170 (274)
T 3i8s_A 158 ALKLAIDRYKANE 170 (274)
T ss_dssp HHHHHHHTCCCCC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988754
No 29
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.84 E-value=6.5e-21 Score=165.83 Aligned_cols=152 Identities=24% Similarity=0.307 Sum_probs=90.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|.+|||||||+|+|.+.....+++.++++..... .+......+.+|||||. ..+..+ ...++..+|++
T Consensus 7 ~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~--~~~~~~-------~~~~~~~~~~~ 76 (166)
T 3q72_A 7 LLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSI-VVDGEEASLMVYDIWEQ--DGGRWL-------PGHCMAMGDAY 76 (166)
T ss_dssp EEESTTSSHHHHHHHHCCC----------CEEEEEE-EETTEEEEEEEEECC------------------------CCEE
T ss_pred EECCCCCCHHHHHHHHcCccccCCCCccccceEEEE-EECCEEEEEEEEECCCC--ccchhh-------hhhhhhhCCEE
Confidence 999999999999999999888777788888875332 34445567899999994 333322 23346889999
Q ss_pred EEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCceEEEcccCCCCCHHHHH
Q 015293 196 VVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 271 (409)
Q Consensus 196 llVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~-~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~ 271 (409)
++|+|++++. .....++....... ..+.|+++|+||+|+.....+. .....+....+ .+++++||++|.|+++++
T Consensus 77 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~ 155 (166)
T 3q72_A 77 VIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFD-CKFIETSAALHHNVQALF 155 (166)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTT-CEEEECBGGGTBSHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhC-CcEEEeccCCCCCHHHHH
Confidence 9999998654 22233333333221 2579999999999997533211 11122222223 489999999999999999
Q ss_pred HHHHhhC
Q 015293 272 DWILTKL 278 (409)
Q Consensus 272 ~~L~~~l 278 (409)
++|.+.+
T Consensus 156 ~~l~~~~ 162 (166)
T 3q72_A 156 EGVVRQI 162 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 30
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=2.9e-20 Score=166.66 Aligned_cols=156 Identities=19% Similarity=0.258 Sum_probs=107.8
Q ss_pred EEecCCCChHHHHHHHhCCcce-eeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLS-IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~-~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|.+|+|||||+|+|++..+. ...+..+++.......+......+.+|||||. ..+..+. ..++..+|+
T Consensus 28 vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~-------~~~~~~~d~ 98 (192)
T 2fg5_A 28 LLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQ--ERFHSLA-------PMYYRGSAA 98 (192)
T ss_dssp EEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCS--GGGGGGT-------HHHHTTCSE
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCc--hhhHhhh-------HHhhccCCE
Confidence 9999999999999999988753 35566777666555555556678999999994 3333332 234678999
Q ss_pred EEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 195 IVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 195 illVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
+++|+|++++.. ....++.........+.|+++|+||+|+..... .......... .+ .+++++||++|.|+++|
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~~Sa~~~~gi~~l 176 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAES-IG-AIVVETSAKNAINIEEL 176 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT-TT-CEEEECBTTTTBSHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHH-cC-CEEEEEeCCCCcCHHHH
Confidence 999999987642 222233222221124789999999999964221 2223333332 23 47999999999999999
Q ss_pred HHHHHhhCCCCC
Q 015293 271 RDWILTKLPLGP 282 (409)
Q Consensus 271 ~~~L~~~l~~~~ 282 (409)
+++|.+.+...+
T Consensus 177 ~~~l~~~i~~~~ 188 (192)
T 2fg5_A 177 FQGISRQIPPLD 188 (192)
T ss_dssp HHHHHHTCC---
T ss_pred HHHHHHHHHhhC
Confidence 999999887544
No 31
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.84 E-value=8.7e-21 Score=166.28 Aligned_cols=156 Identities=22% Similarity=0.256 Sum_probs=97.9
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
.+ ++|.+|||||||+|+|.+.......+.++++.......+......+.+|||||........+ ...++..+
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~-------~~~~~~~~ 78 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWS-------QESCLQGG 78 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHH-------HHHTTTSC
T ss_pred EEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhh-------HHhhcccC
Confidence 44 99999999999999999998877777777776544433433445789999999532111212 23457789
Q ss_pred ceEEEEeeCCCCCC--hHHHHHHHHhccC-CCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCH
Q 015293 193 DCIVVLVDACKAPE--RIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 193 DvillVvD~~~~~~--~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi 267 (409)
|++++|+|++++.. ....++..+.... ..+.|+++|+||+|+..... ......+.... + .+++++||++|.|+
T Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 79 SAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVF-D-CKFIETSATLQHNV 156 (175)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHH-T-SEEEECBTTTTBSH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHc-C-CeEEEEecCCCCCH
Confidence 99999999986542 2223332222211 14799999999999975322 12222222222 2 37999999999999
Q ss_pred HHHHHHHHhhC
Q 015293 268 EDIRDWILTKL 278 (409)
Q Consensus 268 ~~L~~~L~~~l 278 (409)
++|+++|.+.+
T Consensus 157 ~~l~~~l~~~~ 167 (175)
T 2nzj_A 157 AELFEGVVRQL 167 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 32
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.84 E-value=1.5e-20 Score=163.63 Aligned_cols=154 Identities=21% Similarity=0.215 Sum_probs=104.4
Q ss_pred EEecCCCChHHHHHHHhCCcceee-ecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v-~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|.+|+|||||+|+|++..+... .+..+++.......+...+..+.+|||||. ..+..+ ...++..+|+
T Consensus 11 v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--~~~~~~-------~~~~~~~~d~ 81 (170)
T 1r2q_A 11 LLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ--ERYHSL-------APMYYRGAQA 81 (170)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS--GGGGGG-------HHHHHTTCSE
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCc--HHhhhh-------hHHhccCCCE
Confidence 999999999999999998765432 234444444444344444678999999995 333333 2344789999
Q ss_pred EEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 195 IVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 195 illVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
+++|+|++++. .....++.........+.|+++|+||+|+..... .......... .+ .+++++||++|.|+++|
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~g~gi~~l 159 (170)
T 1r2q_A 82 AIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADD-NS-LLFMETSAKTSMNVNEI 159 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TT-CEEEECCTTTCTTHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHH-cC-CeEEEEeCCCCCCHHHH
Confidence 99999998753 2233333333332225789999999999864321 1222222222 22 47899999999999999
Q ss_pred HHHHHhhCCC
Q 015293 271 RDWILTKLPL 280 (409)
Q Consensus 271 ~~~L~~~l~~ 280 (409)
+++|.+.+++
T Consensus 160 ~~~i~~~~~~ 169 (170)
T 1r2q_A 160 FMAIAKKLPK 169 (170)
T ss_dssp HHHHHHTSCC
T ss_pred HHHHHHHHhh
Confidence 9999988753
No 33
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.84 E-value=3.8e-21 Score=196.02 Aligned_cols=158 Identities=28% Similarity=0.404 Sum_probs=114.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
|+|+||||||||+|+|++...+.+.+.+++|++.....+.+.+..+.+|||||+.. ....+...+...+..++..||++
T Consensus 28 lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~-~~~~~~~~~~~~~~~~~~~ad~i 106 (456)
T 4dcu_A 28 IVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI-GDEPFLAQIRQQAEIAMDEADVI 106 (456)
T ss_dssp EECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC-------CCHHHHHHHHHHHHHHCSEE
T ss_pred EECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCC-cchHHHHHHHHHHHhhHhhCCEE
Confidence 99999999999999999999988999999999999999999999999999999752 33344566677788889999999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~ 275 (409)
|+|+|+..+....+.++.+.++. .++|+++|+||+|+..... ...+.+. .++..++++||++|.|+.+|++.+.
T Consensus 107 l~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~--~~~e~~~--lg~~~~~~iSA~~g~gv~~L~~~i~ 180 (456)
T 4dcu_A 107 IFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA--NIYDFYS--LGFGEPYPISGTHGLGLGDLLDAVA 180 (456)
T ss_dssp EEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC-----------CCSGG--GSSSSEEECCTTTCTTHHHHHHHHH
T ss_pred EEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccchhhhh--hHHHHHH--cCCCceEEeecccccchHHHHHHHH
Confidence 99999999888888888888877 7899999999999864321 1111111 1344678999999999999999999
Q ss_pred hhCCC
Q 015293 276 TKLPL 280 (409)
Q Consensus 276 ~~l~~ 280 (409)
+.++.
T Consensus 181 ~~l~~ 185 (456)
T 4dcu_A 181 EHFKN 185 (456)
T ss_dssp TTGGG
T ss_pred hhccc
Confidence 87753
No 34
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.84 E-value=4.2e-20 Score=165.68 Aligned_cols=152 Identities=20% Similarity=0.185 Sum_probs=106.7
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
.+ ++|.+|||||||+|+|.+..+....++.+.+ ...+..++..+.+|||||.. .+..+ ...++..+
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~~~~~ 91 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT----SEELAIGNIKFTTFDLGGHI--QARRL-------WKDYFPEV 91 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE----EEEEEETTEEEEEEECCCSG--GGTTS-------GGGGCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC----eEEEEECCEEEEEEECCCCH--HHHHH-------HHHHHhcC
Confidence 44 9999999999999999988776544444443 34455667999999999953 33322 23457899
Q ss_pred ceEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHHhc----------CCCceEEEc
Q 015293 193 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF----------TDVDEVIPV 259 (409)
Q Consensus 193 DvillVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~----------~~~~~iv~i 259 (409)
|++++|+|++++. .....++...++.. ..+.|+++|+||+|+.......+..+.+... ....+++++
T Consensus 92 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (190)
T 1m2o_B 92 NGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMC 171 (190)
T ss_dssp CEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEEC
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEe
Confidence 9999999998764 22334444443321 2579999999999997633333333333221 123479999
Q ss_pred ccCCCCCHHHHHHHHHhhC
Q 015293 260 SAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 260 SA~~g~gi~~L~~~L~~~l 278 (409)
||++|.|+++++++|.+.+
T Consensus 172 Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 172 SVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp BTTTTBSHHHHHHHHHTTC
T ss_pred ECCcCCCHHHHHHHHHhhC
Confidence 9999999999999998653
No 35
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.84 E-value=5.6e-20 Score=164.85 Aligned_cols=154 Identities=19% Similarity=0.213 Sum_probs=105.1
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceee--ecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhh
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 189 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v--~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~ 189 (409)
.++ |+|.+|||||||+|+|++..+..+ .++.+.+ ...+...+..+.+|||||. ..+..+ ...++
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~ 84 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYN----VETFEKGRVAFTVFDMGGA--KKFRGL-------WETYY 84 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEE----EEEEEETTEEEEEEEECCS--GGGGGG-------GGGGC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCccccccccccee----EEEEEeCCEEEEEEECCCC--HhHHHH-------HHHHH
Confidence 344 999999999999999999987654 3444422 2234567889999999995 333333 23457
Q ss_pred cCcceEEEEeeCCCCC--ChHHHHHHHHhccCC--------CCCCEEEEEecCCCCChhhHHHHHHHHHh----cCCCce
Q 015293 190 INADCIVVLVDACKAP--ERIDEILEEGVGDHK--------DKLPILLVLNKKDLIKPGEIAKKLEWYEK----FTDVDE 255 (409)
Q Consensus 190 ~~aDvillVvD~~~~~--~~~~~~l~~~l~~~~--------~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~----~~~~~~ 255 (409)
..+|++|+|+|++++. .....++...+.... .+.|+++|+||+|+............+.. .....+
T Consensus 85 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (199)
T 4bas_A 85 DNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFV 164 (199)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEE
T ss_pred hcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeE
Confidence 8999999999999764 233344544443210 27899999999999866333332222210 112348
Q ss_pred EEEcccCCCCCHHHHHHHHHhhCC
Q 015293 256 VIPVSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 256 iv~iSA~~g~gi~~L~~~L~~~l~ 279 (409)
++++||++|.||++++++|.+.+.
T Consensus 165 ~~~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 165 IFASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHH
T ss_pred EEEeeCCCccCHHHHHHHHHHHHH
Confidence 999999999999999999988664
No 36
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.84 E-value=4.8e-21 Score=167.76 Aligned_cols=157 Identities=27% Similarity=0.369 Sum_probs=100.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|++|||||||+|+|.+.... ++..+++|.+.....+..++..+.+|||||............+..... ....+|++
T Consensus 8 lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~~~~ 85 (165)
T 2wji_A 8 LIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYI-INEKPDLV 85 (165)
T ss_dssp EECSTTSSHHHHHHHHHCCSSS-CC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHH-HHHCCSEE
T ss_pred EECCCCCCHHHHHHHHhCCCee-ccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHH-hcCCCCEE
Confidence 9999999999999999987653 566777777766666777788999999999643221111111211111 12479999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~ 275 (409)
++|+|+++. .....++.. +.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.|+++++++|.
T Consensus 86 i~v~D~~~~-~~~~~~~~~-~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~SA~~~~~v~~l~~~l~ 160 (165)
T 2wji_A 86 VNIVDATAL-ERNLYLTLQ-LME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILG-VKVVPLSAAKKMGIEELKKAIS 160 (165)
T ss_dssp EEEEETTCH-HHHHHHHHH-HHH--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT-SCEEECBGGGTBSHHHHHHHHH
T ss_pred EEEecCCch-hHhHHHHHH-HHh--cCCCEEEEEEchHhccccChhhHHHHHHHHhC-CCEEEEEcCCCCCHHHHHHHHH
Confidence 999999763 222223323 333 57999999999998532111000111111112 3789999999999999999998
Q ss_pred hhCC
Q 015293 276 TKLP 279 (409)
Q Consensus 276 ~~l~ 279 (409)
+.+.
T Consensus 161 ~~~~ 164 (165)
T 2wji_A 161 IAVK 164 (165)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 8763
No 37
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.84 E-value=3.6e-20 Score=161.33 Aligned_cols=154 Identities=16% Similarity=0.202 Sum_probs=104.4
Q ss_pred EEecCCCChHHHHHHHhCCcce-eeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLS-IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~-~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|.+|+|||||+|+|++..+. ...+..+++.......+......+.+|||||.. .+..+. ..++..+|+
T Consensus 11 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~--~~~~~~-------~~~~~~~~~ 81 (170)
T 1z0j_A 11 LLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE--RFRALA-------PMYYRGSAA 81 (170)
T ss_dssp EECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG--GGGGGT-------HHHHTTCSE
T ss_pred EECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch--hhhccc-------HhhCcCCCE
Confidence 9999999999999999988753 234555655554444444455789999999953 333332 234688999
Q ss_pred EEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCceEEEcccCCCCCHHHHH
Q 015293 195 IVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 271 (409)
Q Consensus 195 illVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~-~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~ 271 (409)
+++|+|++++.. ....++...........|+++|+||+|+.....+ ......+....+ .+++++||++|.|+++|+
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~ 160 (170)
T 1z0j_A 82 AIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIH-AIFVETSAKNAININELF 160 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECBTTTTBSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcC-CEEEEEeCCCCcCHHHHH
Confidence 999999987542 2222222222211267899999999999753221 111222222223 479999999999999999
Q ss_pred HHHHhhCC
Q 015293 272 DWILTKLP 279 (409)
Q Consensus 272 ~~L~~~l~ 279 (409)
++|.+.++
T Consensus 161 ~~i~~~i~ 168 (170)
T 1z0j_A 161 IEISRRIP 168 (170)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHh
Confidence 99998875
No 38
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.83 E-value=6.6e-20 Score=160.02 Aligned_cols=154 Identities=16% Similarity=0.227 Sum_probs=106.5
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
..+ ++|.+|+|||||+|+|.+..+....++.+ .....+..++..+.+|||||.. .+..+ +..++..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~Dt~G~~--~~~~~-------~~~~~~~ 74 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIG----FNVETVTYKNLKFQVWDLGGLT--SIRPY-------WRCYYSN 74 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSS----EEEEEEEETTEEEEEEEECCCG--GGGGG-------GGGGCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCc----cceEEEEECCEEEEEEECCCCh--hhhHH-------HHHHhcc
Confidence 344 99999999999999999877643222222 2233445568899999999953 33322 3455789
Q ss_pred cceEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCceEEEcccCCCC
Q 015293 192 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGH 265 (409)
Q Consensus 192 aDvillVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~---~~~~~~iv~iSA~~g~ 265 (409)
+|++++|+|++++. .....++...+... ..+.|+++|+||+|+............+.. .....+++++||++|.
T Consensus 75 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (171)
T 1upt_A 75 TDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGT 154 (171)
T ss_dssp CSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCc
Confidence 99999999998764 33444555544431 157899999999999865333333333221 1112378999999999
Q ss_pred CHHHHHHHHHhhCC
Q 015293 266 GVEDIRDWILTKLP 279 (409)
Q Consensus 266 gi~~L~~~L~~~l~ 279 (409)
|+++++++|.+.+.
T Consensus 155 gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 155 GLDEAMEWLVETLK 168 (171)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988764
No 39
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.83 E-value=1.1e-19 Score=161.11 Aligned_cols=149 Identities=16% Similarity=0.209 Sum_probs=106.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|.+|||||||+|+|++..+....++.+.+.. .+..++..+.+|||||.. .+..+ ...++..+|++
T Consensus 26 v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~~~~~d~i 92 (181)
T 2h17_A 26 IVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQE--SLRSS-------WNTYYTNTEFV 92 (181)
T ss_dssp EEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE----EEEETTEEEEEEEESSSG--GGTCG-------GGGGGTTCCEE
T ss_pred EECCCCCCHHHHHHHHhcCCCCccCCcCceeeE----EEEECCEEEEEEECCCCH--hHHHH-------HHHHhccCCEE
Confidence 999999999999999999888666777765543 233467899999999953 33322 24557899999
Q ss_pred EEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCceEEEcccCCCCCHHH
Q 015293 196 VVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 196 llVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~---~~~~~~iv~iSA~~g~gi~~ 269 (409)
++|+|++++. .....++...+... ..+.|+++|+||+|+............+.. .....+++++||++|.|+++
T Consensus 93 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 172 (181)
T 2h17_A 93 IVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ 172 (181)
T ss_dssp EEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHH
Confidence 9999998864 33334455544321 267999999999999764333333333211 11123789999999999999
Q ss_pred HHHHHHhh
Q 015293 270 IRDWILTK 277 (409)
Q Consensus 270 L~~~L~~~ 277 (409)
++++|.+.
T Consensus 173 l~~~l~~~ 180 (181)
T 2h17_A 173 GLEWMMSR 180 (181)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhh
Confidence 99999864
No 40
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.83 E-value=4.4e-20 Score=160.20 Aligned_cols=151 Identities=17% Similarity=0.159 Sum_probs=103.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|.+|||||||+|+|++..+....++.+ .....+..++..+.+|||||.. .+.. ....++..+|++
T Consensus 5 ~~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~--~~~~-------~~~~~~~~~d~~ 71 (164)
T 1r8s_A 5 MVGLDAAGKTTILYKLKLGEIVTTIPTIG----FNVETVEYKNISFTVWDVGGQD--KIRP-------LWRHYFQNTQGL 71 (164)
T ss_dssp EECSTTSSHHHHHHHHHHHCSSCCCCCSS----CCEEEEECSSCEEEEEECCCCG--GGHH-------HHHHHTTTCSEE
T ss_pred EECCCCCCHHHHHHHHHcCCcCcccCcCc----eeEEEEEECCEEEEEEEcCCCh--hhHH-------HHHHHhccCCEE
Confidence 89999999999999999876542222222 2334456677899999999953 3222 234457899999
Q ss_pred EEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHHhc---CCCceEEEcccCCCCCHHH
Q 015293 196 VVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 196 llVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~---~~~~~iv~iSA~~g~gi~~ 269 (409)
++|+|++++. .....++...+... ..+.|+++|+||+|+............+... ....+++++||++|.|+++
T Consensus 72 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 151 (164)
T 1r8s_A 72 IFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 151 (164)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHH
Confidence 9999998763 33334444444321 2578999999999997653333333332211 1123689999999999999
Q ss_pred HHHHHHhhCC
Q 015293 270 IRDWILTKLP 279 (409)
Q Consensus 270 L~~~L~~~l~ 279 (409)
++++|.+.+.
T Consensus 152 l~~~l~~~i~ 161 (164)
T 1r8s_A 152 GLDWLSNQLR 161 (164)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHh
Confidence 9999998775
No 41
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.83 E-value=7.3e-20 Score=161.43 Aligned_cols=155 Identities=18% Similarity=0.213 Sum_probs=102.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeee-cCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~-~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|.+|+|||||+|+|++..+.... +..+.+.......+......+.+|||||. ..+..+. ..++..+|+
T Consensus 17 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~-------~~~~~~~d~ 87 (181)
T 2efe_B 17 LLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ--ERYHSLA-------PMYYRGAAA 87 (181)
T ss_dssp EECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCS--GGGGGGT-------HHHHTTCSE
T ss_pred EECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCC--hhhhhhh-------HHHhccCCE
Confidence 9999999999999999987764322 23333333333333334568999999994 3333332 234788999
Q ss_pred EEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 195 IVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 195 illVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
+++|+|++++.. ....++.........+.|+++|+||+|+..... .......... .+ .+++++||++|.|++++
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~g~gi~~l 165 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQE-NG-LFFMETSAKTATNVKEI 165 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-TT-CEEEECCSSSCTTHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHH-cC-CEEEEEECCCCCCHHHH
Confidence 999999987542 222333333222225789999999999965322 2222222222 23 37999999999999999
Q ss_pred HHHHHhhCCCC
Q 015293 271 RDWILTKLPLG 281 (409)
Q Consensus 271 ~~~L~~~l~~~ 281 (409)
+++|.+.+...
T Consensus 166 ~~~l~~~~~~~ 176 (181)
T 2efe_B 166 FYEIARRLPRV 176 (181)
T ss_dssp HHHHHHTCC--
T ss_pred HHHHHHHHHhc
Confidence 99999988643
No 42
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.83 E-value=4.8e-20 Score=160.11 Aligned_cols=151 Identities=18% Similarity=0.162 Sum_probs=99.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeC--CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~--~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|+|++..+. .....|+.......+.. ....+.+|||||.. .+..+. ..++..+|
T Consensus 8 v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~--~~~~~~-------~~~~~~~d 76 (167)
T 1c1y_A 8 VLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTE--QFTAMR-------DLYMKNGQ 76 (167)
T ss_dssp EECSTTSSHHHHHHHHHHCCCC--CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSC--SSTTHH-------HHHHHHCS
T ss_pred EECCCCCCHHHHHHHHHcCCCC--CCCCCCccceEEEEEEECCEEEEEEEEECCChH--HHHHHH-------HHHhccCC
Confidence 9999999999999999987653 33344444433333333 34678999999953 333332 23456799
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhcc-CCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~~-~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
++++|+|++++. .....++...... ...+.|+++|+||+|+..... .......... .+..+++++||++|.|++
T Consensus 77 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~ 155 (167)
T 1c1y_A 77 GFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ-WCNCAFLESSAKSKINVN 155 (167)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-TTSCEEEECBTTTTBSHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHH-ccCCcEEEecCCCCCCHH
Confidence 999999998753 1222232222221 115799999999999965322 1222222222 224589999999999999
Q ss_pred HHHHHHHhhC
Q 015293 269 DIRDWILTKL 278 (409)
Q Consensus 269 ~L~~~L~~~l 278 (409)
+|+++|.+.+
T Consensus 156 ~l~~~l~~~i 165 (167)
T 1c1y_A 156 EIFYDLVRQI 165 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 43
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.83 E-value=3.1e-21 Score=176.97 Aligned_cols=156 Identities=21% Similarity=0.259 Sum_probs=110.5
Q ss_pred EEecCCCChHHHHHHHh-CCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMI-GQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~-~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|.+|||||||+|+++ +.......+++++|.......+...+..+.+|||||. ..+..+.. .++..+|+
T Consensus 20 v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~~-------~~~~~~~~ 90 (221)
T 3gj0_A 20 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ--EKFGGLRD-------GYYIQAQC 90 (221)
T ss_dssp EEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSG--GGTSCCCH-------HHHTTCCE
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCh--HHHhHHHH-------HHHhcCCE
Confidence 99999999999999954 4445556788888888877777777788999999994 44443332 33678999
Q ss_pred EEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHH
Q 015293 195 IVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 272 (409)
Q Consensus 195 illVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~ 272 (409)
+++|+|++++. .....++...... ..+.|+++|+||+|+................ + .+++++||++|.|++++++
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~~~gi~~l~~ 167 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVKAKSIVFHRKK-N-LQYYDISAKSNYNFEKPFL 167 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-STTCCEEEEEECTTSSSCSSCGGGCCHHHHH-T-CEEEECBGGGTBTTTHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECCccccccccHHHHHHHHHc-C-CEEEEEeCCCCCCHHHHHH
Confidence 99999998754 2222333333222 2579999999999997532211111111111 2 3799999999999999999
Q ss_pred HHHhhCCCCCC
Q 015293 273 WILTKLPLGPA 283 (409)
Q Consensus 273 ~L~~~l~~~~~ 283 (409)
+|.+.+...+.
T Consensus 168 ~l~~~l~~~~~ 178 (221)
T 3gj0_A 168 WLARKLIGDPN 178 (221)
T ss_dssp HHHHHHHTCTT
T ss_pred HHHHHHHhCcc
Confidence 99988765544
No 44
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.83 E-value=1.6e-20 Score=165.29 Aligned_cols=154 Identities=17% Similarity=0.197 Sum_probs=107.9
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
..+ ++|.+|||||||+|+|++..+. ....+++|.+.....+..++..+.+|||||.. .+..+ ....+..
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~~~~~~ 78 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHSKVT-EQEAGGITQHIGAYQVTVNDKKITFLDTPGHE--AFTTM-------RARGAQV 78 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTTCSS-CSSCCSSSTTCCCCEEEETTEEEEESCCCSSS--SSSCS-------CCSSCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccc-cCCCCceeEeeeEEEEEeCCceEEEEECCCCH--HHHHH-------HHHHHhh
Confidence 344 9999999999999999988764 34445555444444456677889999999953 33322 1244788
Q ss_pred cceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcC-------CCceEEEcccCCC
Q 015293 192 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT-------DVDEVIPVSAKYG 264 (409)
Q Consensus 192 aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~-------~~~~iv~iSA~~g 264 (409)
+|++++|+|++++........+..+.. .+.|+++|+||+|+..... ......+.... ...+++++||++|
T Consensus 79 ~d~~i~v~d~~~~~~~~~~~~l~~~~~--~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (178)
T 2lkc_A 79 TDIVILVVAADDGVMPQTVEAINHAKA--ANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSAKTK 155 (178)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHHHHGG--GSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred CCEEEEEEECCCCCcHHHHHHHHHHHh--CCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence 999999999988765544444444443 5799999999999976421 22222222211 1247999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 015293 265 HGVEDIRDWILTKLP 279 (409)
Q Consensus 265 ~gi~~L~~~L~~~l~ 279 (409)
.|+++|+++|.+.+.
T Consensus 156 ~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 156 EGLDHLLEMILLVSE 170 (178)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhh
Confidence 999999999987653
No 45
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=4.5e-20 Score=164.74 Aligned_cols=161 Identities=20% Similarity=0.239 Sum_probs=106.7
Q ss_pred EEecCCCChHHHHHHHhCCccee-eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|.+|||||||+|+|++..+.. ..+..+.+.......+......+.||||||. ..+..+ ...++..+|+
T Consensus 20 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~~~~d~ 90 (195)
T 1x3s_A 20 IIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ--ERFRTL-------TPSYYRGAQG 90 (195)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSS--GGGCCS-------HHHHHTTCCE
T ss_pred EECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCc--hhhhhh-------hHHHhccCCE
Confidence 99999999999999999877542 2233333433333333444578999999995 333333 2344789999
Q ss_pred EEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChh-hHHHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 195 IVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPG-EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 195 illVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~-~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
+++|+|++++. .....++....... ..+.|+++|+||+|+.... .......+... .+ .+++++||++|.|++++
T Consensus 91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~gi~~l 168 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARK-HS-MLFIEASAKTCDGVQCA 168 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHH-TT-CEEEECCTTTCTTHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHH-cC-CEEEEecCCCCCCHHHH
Confidence 99999998753 22233333333221 1468999999999995422 11222222222 23 47899999999999999
Q ss_pred HHHHHhhCCCCCCCCCC
Q 015293 271 RDWILTKLPLGPAYYPK 287 (409)
Q Consensus 271 ~~~L~~~l~~~~~~~~~ 287 (409)
+++|.+.+...++.++.
T Consensus 169 ~~~l~~~~~~~~~~~~~ 185 (195)
T 1x3s_A 169 FEELVEKIIQTPGLWES 185 (195)
T ss_dssp HHHHHHHHHTSGGGTCC
T ss_pred HHHHHHHHHhhhhhhcc
Confidence 99999988766555543
No 46
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.1e-20 Score=198.72 Aligned_cols=199 Identities=19% Similarity=0.123 Sum_probs=127.9
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeec------------------------------CCCceEEEEEEEEeCCCeeE
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTN------------------------------KPQTTRHRILGICSGPEYQM 161 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~------------------------------~~~tt~~~~~~~~~~~~~~i 161 (409)
..+ ++|++|+|||||+|+|++....+... .+|+|.+.....+...+.++
T Consensus 168 lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~~ 247 (611)
T 3izq_1 168 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANF 247 (611)
T ss_dssp CEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCceE
Confidence 345 99999999999999999875433221 25778777777778888999
Q ss_pred EEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCC-------CChHHHHHHHHhccCCCC-CCEEEEEecCC
Q 015293 162 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDK-LPILLVLNKKD 233 (409)
Q Consensus 162 ~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~-------~~~~~~~l~~~l~~~~~~-~p~ilvlNK~D 233 (409)
.||||||+.. +...+..++..||++|+|+|++.+ ...+.......+.. .+ .|+|+|+||+|
T Consensus 248 ~iiDTPG~e~---------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~--lgi~~iIVVvNKiD 316 (611)
T 3izq_1 248 TIVDAPGHRD---------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--LGIHNLIIAMNKMD 316 (611)
T ss_dssp EEEECCSSSC---------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT--TTCCEEEEEEECTT
T ss_pred EEEECCCCcc---------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH--cCCCeEEEEEeccc
Confidence 9999999633 445667778999999999999874 23344444444444 34 45999999999
Q ss_pred CCCh--hhHHHHH----HHHHhcC---CCceEEEcccCCCCCHHHH---------------HHHHHhhCCCCCCCCCCcc
Q 015293 234 LIKP--GEIAKKL----EWYEKFT---DVDEVIPVSAKYGHGVEDI---------------RDWILTKLPLGPAYYPKDI 289 (409)
Q Consensus 234 l~~~--~~~~~~~----~~~~~~~---~~~~iv~iSA~~g~gi~~L---------------~~~L~~~l~~~~~~~~~~~ 289 (409)
+... ....... ..+.... ...+++++||++|.|+.+| ++.|.......+ .+++..
T Consensus 317 l~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p-~~~p~~ 395 (611)
T 3izq_1 317 NVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKIS-KENEGI 395 (611)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCC-CSSSCC
T ss_pred ccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhccc-ccCccc
Confidence 9862 2122111 2222211 1358999999999999854 444444333222 233333
Q ss_pred ccCchHHHHHHHHHHHHHHhhcCC----CCCceeEEEEEEEEecCC
Q 015293 290 VSEHPERFFVGEIIREKIFMQYRN----EVPYACQVNVVSYKTRPT 331 (409)
Q Consensus 290 ~t~~~~r~~i~EiiRe~i~~~~~~----eipys~~v~v~~~~~~~~ 331 (409)
.++.|.++.+.+++ +. ..+-.....+..+..+.|
T Consensus 396 ~~~~p~r~~V~~v~--------~~~~~~g~g~v~~G~V~~G~lk~G 433 (611)
T 3izq_1 396 NKDDPFLFSVLEII--------PSKKTSNDLALVSGKLESGSIQPG 433 (611)
T ss_dssp SCCSCCEEECCEEE--------CCSSSCSSSSEEEEEEEESEECTT
T ss_pred ccccchhhheeeee--------ccCccCCCeeEEEEEEEeceeccC
Confidence 45667666555433 21 133445566666666654
No 47
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.83 E-value=3.1e-20 Score=161.60 Aligned_cols=154 Identities=21% Similarity=0.206 Sum_probs=101.5
Q ss_pred EEecCCCChHHHHHHHhCCccee-eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|.+|+|||||+|+|++..... ..+..+.+.......+......+.+|||||. ..+..+ ...++..+|+
T Consensus 8 v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--~~~~~~-------~~~~~~~~d~ 78 (170)
T 1ek0_A 8 LLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ--ERFASL-------APXYYRNAQA 78 (170)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS--GGGGGG-------HHHHHTTCSE
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCC--hhhhhh-------hhhhhccCcE
Confidence 99999999999999999877542 2333444433333333334468999999994 333333 3344789999
Q ss_pred EEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCCh---hhH-HHHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 195 IVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKP---GEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 195 illVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~---~~~-~~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
+++|+|++++.. ....++.........+.|+++|+||+|+... ..+ ......+....+ .+++++||++|.|++
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~ 157 (170)
T 1ek0_A 79 ALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG-LLFFETSAKTGENVN 157 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-CEEEECCTTTCTTHH
T ss_pred EEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHH
Confidence 999999987532 2223333332222257899999999998643 111 111111221122 379999999999999
Q ss_pred HHHHHHHhhCC
Q 015293 269 DIRDWILTKLP 279 (409)
Q Consensus 269 ~L~~~L~~~l~ 279 (409)
+++++|.+.+.
T Consensus 158 ~l~~~l~~~i~ 168 (170)
T 1ek0_A 158 DVFLGIGEKIP 168 (170)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHHHHHh
Confidence 99999998775
No 48
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.83 E-value=3e-20 Score=176.51 Aligned_cols=162 Identities=31% Similarity=0.348 Sum_probs=114.1
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
.+ ++|+||||||||+|+|+|... .++..+++|.+.....+..++..+.+|||||+.............. .......+
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~-~~~~~~~~ 82 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIAR-NFILDGNA 82 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHH-HHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHH-HhhhccCC
Confidence 44 999999999999999999887 6889999999999888888899999999999754322222222222 22223789
Q ss_pred ceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHH
Q 015293 193 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 272 (409)
Q Consensus 193 DvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~ 272 (409)
|++++|+|+++.. ....++.+.... ...|+++|+||+|+............+....+ .+++++||++|.|+++|++
T Consensus 83 d~vi~v~D~~~~~-~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg-~~~~~~Sa~~g~gi~~l~~ 158 (271)
T 3k53_A 83 DVIVDIVDSTCLM-RNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG-VPVIPTNAKKGEGVEELKR 158 (271)
T ss_dssp SEEEEEEEGGGHH-HHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS-SCEEECBGGGTBTHHHHHH
T ss_pred cEEEEEecCCcch-hhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHHHHHHHHHcC-CcEEEEEeCCCCCHHHHHH
Confidence 9999999998742 222233333322 23999999999997532211100111222223 4799999999999999999
Q ss_pred HHHhhCCCC
Q 015293 273 WILTKLPLG 281 (409)
Q Consensus 273 ~L~~~l~~~ 281 (409)
.|.+.+...
T Consensus 159 ~i~~~~~~~ 167 (271)
T 3k53_A 159 MIALMAEGK 167 (271)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhcc
Confidence 999877543
No 49
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.83 E-value=7.4e-20 Score=162.60 Aligned_cols=155 Identities=17% Similarity=0.208 Sum_probs=107.0
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
..+ ++|.+|||||||+|+|++.......++.+.+ ...+..++..+.+|||||.. .+.. ....++..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~Dt~G~~--~~~~-------~~~~~~~~ 85 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFN----IKTLEHRGFKLNIWDVGGQK--SLRS-------YWRNYFES 85 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEE----EEEEEETTEEEEEEEECCSH--HHHT-------TGGGGCTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcccccCccc----eEEEEECCEEEEEEECCCCH--hHHH-------HHHHHhcC
Confidence 445 9999999999999999988733223333322 23344567899999999953 2222 23456789
Q ss_pred cceEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCceEEEcccCCCC
Q 015293 192 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGH 265 (409)
Q Consensus 192 aDvillVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~---~~~~~~iv~iSA~~g~ 265 (409)
+|++++|+|++++. .....++...+... ..+.|+++|+||+|+............+.. .....+++++||++|.
T Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (186)
T 1ksh_A 86 TDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGE 165 (186)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCC
Confidence 99999999998764 22334444444321 257999999999999765444433333321 1123478999999999
Q ss_pred CHHHHHHHHHhhCCC
Q 015293 266 GVEDIRDWILTKLPL 280 (409)
Q Consensus 266 gi~~L~~~L~~~l~~ 280 (409)
|+++++++|.+.+.+
T Consensus 166 gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 166 DLLPGIDWLLDDISS 180 (186)
T ss_dssp THHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987754
No 50
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.83 E-value=1.5e-19 Score=161.49 Aligned_cols=152 Identities=16% Similarity=0.188 Sum_probs=104.2
Q ss_pred EEecCCCChHHHHHHHhCCccee-eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
|+|.+|||||||+|+|++..+.. ..++.+.+. ..+...+..+.+|||||. ..+..+ +..++..+|+
T Consensus 27 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~----~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~~~~~d~ 93 (188)
T 1zd9_A 27 LVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM----RKITKGNVTIKLWDIGGQ--PRFRSM-------WERYCRGVSA 93 (188)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE----EEEEETTEEEEEEEECCS--HHHHTT-------HHHHHTTCSE
T ss_pred EECCCCCCHHHHHHHHHcCCCCCccCCCCceeE----EEEEeCCEEEEEEECCCC--HhHHHH-------HHHHHccCCE
Confidence 99999999999999999877641 222222222 234567889999999995 332222 3345789999
Q ss_pred EEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHHhc---CCCceEEEcccCCCCCHH
Q 015293 195 IVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 195 illVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~---~~~~~iv~iSA~~g~gi~ 268 (409)
+++|+|+++.. .....++...+... ..+.|+++|+||+|+............+... ....+++++||++|.|++
T Consensus 94 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 173 (188)
T 1zd9_A 94 IVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNID 173 (188)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence 99999998754 33334454444421 1579999999999997643333333332211 123478999999999999
Q ss_pred HHHHHHHhhCCC
Q 015293 269 DIRDWILTKLPL 280 (409)
Q Consensus 269 ~L~~~L~~~l~~ 280 (409)
+|+++|.+.+..
T Consensus 174 ~l~~~l~~~~~~ 185 (188)
T 1zd9_A 174 ITLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999988753
No 51
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.82 E-value=2.1e-20 Score=164.53 Aligned_cols=151 Identities=18% Similarity=0.203 Sum_probs=102.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|+|++..+. ....+.++.+.....+..++ ..+.+|||||. ..+..+ ...++..+|
T Consensus 14 v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~~~~d 83 (181)
T 3tw8_B 14 IIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ--ERFRTI-------TSTYYRGTH 83 (181)
T ss_dssp EECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTG--GGCSSC-------CGGGGTTCS
T ss_pred EECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCc--hhhhhh-------HHHHhccCC
Confidence 9999999999999999998875 44556666666555555555 67999999994 333322 234578999
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
++++|+|++++.. ....++... .....+.|+++|+||+|+..... ........... + .+++++||++|.|+++
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~-~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~~~gi~~ 160 (181)
T 3tw8_B 84 GVIVVYDVTSAESFVNVKRWLHEI-NQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQM-G-IQLFETSAKENVNVEE 160 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHH-HHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHH-T-CCEEECBTTTTBSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHH-HHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHc-C-CeEEEEECCCCCCHHH
Confidence 9999999987532 122233222 22225799999999999864321 11222222222 2 3789999999999999
Q ss_pred HHHHHHhhCC
Q 015293 270 IRDWILTKLP 279 (409)
Q Consensus 270 L~~~L~~~l~ 279 (409)
++++|.+.+.
T Consensus 161 l~~~l~~~~~ 170 (181)
T 3tw8_B 161 MFNCITELVL 170 (181)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 52
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.82 E-value=9.5e-20 Score=162.76 Aligned_cols=153 Identities=18% Similarity=0.227 Sum_probs=105.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|.+|||||||+|+|++....... .. +|.......+..++..+.+|||||.. .+..+ ...++..+|++
T Consensus 26 v~G~~~~GKSsli~~l~~~~~~~~~-~~-~t~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~~~~~~~d~i 94 (190)
T 2h57_A 26 CLGLDNSGKTTIINKLKPSNAQSQN-IL-PTIGFSIEKFKSSSLSFTVFDMSGQG--RYRNL-------WEHYYKEGQAI 94 (190)
T ss_dssp EEECTTSSHHHHHHHTSCGGGCCSS-CC-CCSSEEEEEEECSSCEEEEEEECCST--TTGGG-------GGGGGGGCSEE
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCC-cC-CccceeEEEEEECCEEEEEEECCCCH--HHHHH-------HHHHHhcCCEE
Confidence 9999999999999999988743222 22 22223445566778899999999953 33322 23457899999
Q ss_pred EEEeeCCCCC--ChHHHHHHHHhccCC---CCCCEEEEEecCCCCChhhHHHHHHHHH--hcC-CCceEEEcccCCCCCH
Q 015293 196 VVLVDACKAP--ERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYE--KFT-DVDEVIPVSAKYGHGV 267 (409)
Q Consensus 196 llVvD~~~~~--~~~~~~l~~~l~~~~---~~~p~ilvlNK~Dl~~~~~~~~~~~~~~--~~~-~~~~iv~iSA~~g~gi 267 (409)
++|+|++++. .....++...+.... .+.|+++|+||+|+............+. ... ...+++++||++|.|+
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 174 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGL 174 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCH
Confidence 9999998753 333344444443321 4789999999999976543333333332 111 2347899999999999
Q ss_pred HHHHHHHHhhCC
Q 015293 268 EDIRDWILTKLP 279 (409)
Q Consensus 268 ~~L~~~L~~~l~ 279 (409)
++|+++|.+.+.
T Consensus 175 ~~l~~~l~~~i~ 186 (190)
T 2h57_A 175 QEGVDWLQDQIQ 186 (190)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 999999998775
No 53
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.82 E-value=2.1e-19 Score=161.41 Aligned_cols=154 Identities=17% Similarity=0.185 Sum_probs=103.6
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
..+ ++|.+|||||||+|+|++..+....++.+ .....+..++..+.+|||||. ..+..+ +..++..
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~~~ 96 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG----FNVETVEYKNICFTVWDVGGQ--DKIRPL-------WRHYFQN 96 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSSCCEEEEEETT----EEEEEEEETTEEEEEEECC-------CTT-------HHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCccccCCcCc----eeEEEEEECCEEEEEEECCCC--HhHHHH-------HHHHhcc
Confidence 345 99999999999999999877653322222 333445567889999999995 333333 2334679
Q ss_pred cceEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHHhc---CCCceEEEcccCCCC
Q 015293 192 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKYGH 265 (409)
Q Consensus 192 aDvillVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~---~~~~~iv~iSA~~g~ 265 (409)
+|++++|+|++++. .....++...+... ..+.|+++|+||+|+............+... ....+++++||++|.
T Consensus 97 ~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~ 176 (192)
T 2b6h_A 97 TQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGT 176 (192)
T ss_dssp CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcC
Confidence 99999999998764 33334444444321 1479999999999997653333333332211 122468999999999
Q ss_pred CHHHHHHHHHhhCC
Q 015293 266 GVEDIRDWILTKLP 279 (409)
Q Consensus 266 gi~~L~~~L~~~l~ 279 (409)
|+++++++|.+.+.
T Consensus 177 gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 177 GLYDGLDWLSHELS 190 (192)
T ss_dssp THHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998774
No 54
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=2.9e-20 Score=163.87 Aligned_cols=153 Identities=17% Similarity=0.149 Sum_probs=100.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|+|++..+......+.++.+.....+..++ ..+.+|||||. ..+. ..+..++..+|
T Consensus 15 v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~-------~~~~~~~~~~d 85 (180)
T 2g6b_A 15 LVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ--ERFR-------SVTHAYYRDAH 85 (180)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------CCGGGCS
T ss_pred EECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCc--HHHH-------HHHHHHccCCC
Confidence 9999999999999999988875434445555554444444444 57899999994 2222 22455678999
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
++++|+|++++.. ....++.........+.|+++|+||+|+..... ........... + .+++++||++|.|+++
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~~~gi~~ 163 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEY-G-LPFMETSAKTGLNVDL 163 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHH-T-CCEEECCTTTCTTHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHc-C-CeEEEEeCCCCCCHHH
Confidence 9999999987542 222333222221125789999999999975321 11222222222 2 3789999999999999
Q ss_pred HHHHHHhhCC
Q 015293 270 IRDWILTKLP 279 (409)
Q Consensus 270 L~~~L~~~l~ 279 (409)
++++|.+.+.
T Consensus 164 l~~~l~~~~~ 173 (180)
T 2g6b_A 164 AFTAIAKELK 173 (180)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 55
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.82 E-value=4.4e-20 Score=160.82 Aligned_cols=152 Identities=18% Similarity=0.182 Sum_probs=97.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|+|||||+|+|++.++. ....+..+.+.....+..+ ...+.+|||||. ..+..+ +..++..+|
T Consensus 8 v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~~-------~~~~~~~~d 77 (170)
T 1g16_A 8 LIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ--ERFRTI-------TTAYYRGAM 77 (170)
T ss_dssp EEESTTSSHHHHHHHHHHCCCC-C-------CCEEEEEEESSSCEEEEEEECCTTG--GGTSCC-------CHHHHTTEE
T ss_pred EECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEeCCCC--hhhhhh-------HHHHhccCC
Confidence 9999999999999999988764 2233333333333344444 357899999994 333333 223467899
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhh-HHHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~-~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
++++|+|++++.. ....++.........+.|+++|+||+|+..... ........... + .+++++||++|.|++++
T Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 78 GIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKEL-G-IPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHH-T-CCEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHc-C-CeEEEEECCCCCCHHHH
Confidence 9999999987532 222333322222225789999999999953211 11222222222 3 37999999999999999
Q ss_pred HHHHHhhCC
Q 015293 271 RDWILTKLP 279 (409)
Q Consensus 271 ~~~L~~~l~ 279 (409)
+++|.+.+.
T Consensus 156 ~~~l~~~~~ 164 (170)
T 1g16_A 156 FFTLAKLIQ 164 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987664
No 56
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.82 E-value=7.2e-20 Score=162.42 Aligned_cols=152 Identities=20% Similarity=0.174 Sum_probs=101.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|+|++..+. ...++|+.+.....+..++ ..+.+|||||. ..+..+.. .++..+|
T Consensus 9 v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~~-------~~~~~~~ 77 (189)
T 4dsu_A 9 VVGADGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ--EEYSAMRD-------QYMRTGE 77 (189)
T ss_dssp EECCTTSSHHHHHHHHHHSSCC--CCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-----CTTHH-------HHHHHCS
T ss_pred EECCCCCCHHHHHHHHHhCCCC--CCCCCCchheEEEEEEECCcEEEEEEEECCCc--HHHHHHHH-------HHHhcCC
Confidence 9999999999999999987753 4555666555555544444 45778999994 33333322 3466799
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
++++|+|++++.. ....++....... ..+.|+++|+||+|+............+....+ .+++++||++|.|++++
T Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l 156 (189)
T 4dsu_A 78 GFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDA 156 (189)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHT-CCEEECCTTTCTTHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence 9999999987532 2222222222211 157999999999999753322222222222223 37999999999999999
Q ss_pred HHHHHhhCC
Q 015293 271 RDWILTKLP 279 (409)
Q Consensus 271 ~~~L~~~l~ 279 (409)
+++|.+.+.
T Consensus 157 ~~~l~~~~~ 165 (189)
T 4dsu_A 157 FYTLVREIR 165 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 57
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.82 E-value=8.4e-21 Score=201.82 Aligned_cols=208 Identities=19% Similarity=0.221 Sum_probs=145.3
Q ss_pred EEEecCCCChHHHHHHHhCCcceeeecCCCceEE----------------------------------------------
Q 015293 115 SVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH---------------------------------------------- 148 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~---------------------------------------------- 148 (409)
+++|.+|+|||||+|+|+|..+......+ +|+.
T Consensus 55 ~vvG~~saGKSSllnaL~g~~~LP~g~g~-~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~ 133 (772)
T 3zvr_A 55 AVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNK 133 (772)
T ss_dssp EEEECTTTCHHHHHHHHHSSCCSCCSSSC-SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTT
T ss_pred EEECCCCCcHHHHHHHHhCCCccCcCCcc-ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCC
Confidence 39999999999999999998763222221 1211
Q ss_pred -----EE-EEEEeCCCeeEEEEeCCCCchhh----hhhHhHHHHHHHHHhh-cCcceEEEEeeCCCCCChHHH-HHHHHh
Q 015293 149 -----RI-LGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAG-INADCIVVLVDACKAPERIDE-ILEEGV 216 (409)
Q Consensus 149 -----~~-~~~~~~~~~~i~liDtpG~~~~~----~~~l~~~~~~~~~~~~-~~aDvillVvD~~~~~~~~~~-~l~~~l 216 (409)
.+ ..+..-...++.|+||||+.... ...+...+.+.+..++ ..+|++++|+|++.+....+. .+...+
T Consensus 134 ~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L 213 (772)
T 3zvr_A 134 GISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV 213 (772)
T ss_dssp CCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHH
T ss_pred cccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHH
Confidence 11 11122234579999999986521 1111222222233333 689999999999987755554 566666
Q ss_pred ccCCCCCCEEEEEecCCCCChhhHH-HHHHH--HHhcCCCceEEEcccCCCCCHHHHHHHHHh---hCCCCCCCCCCccc
Q 015293 217 GDHKDKLPILLVLNKKDLIKPGEIA-KKLEW--YEKFTDVDEVIPVSAKYGHGVEDIRDWILT---KLPLGPAYYPKDIV 290 (409)
Q Consensus 217 ~~~~~~~p~ilvlNK~Dl~~~~~~~-~~~~~--~~~~~~~~~iv~iSA~~g~gi~~L~~~L~~---~l~~~~~~~~~~~~ 290 (409)
.. .+.|+++|+||+|+....... ..... +....++.+++++||++|.|+++|++.|.+ .++++|++ +.+
T Consensus 214 ~~--~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~y---d~l 288 (772)
T 3zvr_A 214 DP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSY---RHL 288 (772)
T ss_dssp CT--TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTT---GGG
T ss_pred Hh--cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccCCcch---hhh
Confidence 65 679999999999998654321 11110 001124568899999999999999999987 47777765 567
Q ss_pred cCchHHHHHHHHHHHHHHhhcCCCCCc----------eeEEEEEEEEe
Q 015293 291 SEHPERFFVGEIIREKIFMQYRNEVPY----------ACQVNVVSYKT 328 (409)
Q Consensus 291 t~~~~r~~i~EiiRe~i~~~~~~eipy----------s~~v~v~~~~~ 328 (409)
++++.++.+++++||+++.++++++|| ++.+.+..+.+
T Consensus 289 tDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~~~ 336 (772)
T 3zvr_A 289 ADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYKN 336 (772)
T ss_dssp GGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999999 88888777653
No 58
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.82 E-value=9.7e-20 Score=162.89 Aligned_cols=153 Identities=18% Similarity=0.177 Sum_probs=104.1
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|+|++.... ....+.++.+.....+..++ ..+.+|||||. ..+..+ ...++..+|
T Consensus 21 v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~~~~d 90 (196)
T 3tkl_A 21 LIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ--ERFRTI-------TSSYYRGAH 90 (196)
T ss_dssp EECSTTSSHHHHHHHHHHSCCC-SCCCCCSSEEEEEEEEEETTEEEEEEEEEECCS--GGGCTT-------HHHHHTTCS
T ss_pred EECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEECCEEEEEEEEECCCc--Hhhhhh-------HHHHHhhCC
Confidence 9999999999999999987764 34445555555555555554 67999999994 333333 234478999
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~-~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
++++|+|++++. .....++.........+.|+++|+||+|+.....+. .....+....+ .+++++||++|.|++++
T Consensus 91 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gv~~l 169 (196)
T 3tkl_A 91 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQS 169 (196)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-CCEEEECTTTCTTHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-CcEEEEeCCCCCCHHHH
Confidence 999999998753 222233322222212578999999999997543221 11222222223 37999999999999999
Q ss_pred HHHHHhhCC
Q 015293 271 RDWILTKLP 279 (409)
Q Consensus 271 ~~~L~~~l~ 279 (409)
+++|.+.+.
T Consensus 170 ~~~l~~~i~ 178 (196)
T 3tkl_A 170 FMTMAAEIK 178 (196)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987664
No 59
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.82 E-value=1.4e-19 Score=159.05 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=99.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|+|||||+|+|++..+. ....+..+.+.....+..++ ..+.+|||||. ..+. .....++..+|
T Consensus 12 v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~-------~~~~~~~~~~~ 81 (177)
T 1wms_A 12 LLGDGGVGKSSLMNRYVTNKFD-TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ--ERFR-------SLRTPFYRGSD 81 (177)
T ss_dssp EECCTTSSHHHHHHHHHHSCCC-C----CCSEEEEEEEEEETTEEEEEEEEECCCC--GGGH-------HHHGGGGTTCS
T ss_pred EECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEEEEEECCEEEEEEEEeCCCc--hhhh-------hhHHHHHhcCC
Confidence 9999999999999999987754 22233333444344444444 58999999994 3322 22445688999
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccC----CCCCCEEEEEecCCCCChh-hHHHHHHHHHhcCCCceEEEcccCCCCC
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDH----KDKLPILLVLNKKDLIKPG-EIAKKLEWYEKFTDVDEVIPVSAKYGHG 266 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~----~~~~p~ilvlNK~Dl~~~~-~~~~~~~~~~~~~~~~~iv~iSA~~g~g 266 (409)
++++|+|++++.. ....++....... ..+.|+++|+||+|+.... ............ ...+++++||++|.|
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~g 160 (177)
T 1wms_A 82 CCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDN-GDYPYFETSAKDATN 160 (177)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHT-TCCCEEECCTTTCTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhc-CCceEEEEeCCCCCC
Confidence 9999999987541 1222222221111 1568999999999996322 122222322222 335799999999999
Q ss_pred HHHHHHHHHhhCC
Q 015293 267 VEDIRDWILTKLP 279 (409)
Q Consensus 267 i~~L~~~L~~~l~ 279 (409)
+++++++|.+.+.
T Consensus 161 i~~l~~~l~~~~~ 173 (177)
T 1wms_A 161 VAAAFEEAVRRVL 173 (177)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987664
No 60
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.82 E-value=1.2e-20 Score=179.60 Aligned_cols=157 Identities=23% Similarity=0.277 Sum_probs=108.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|.||||||||+|+|+|... .+++.||+|.+...+.+.. +..+.+|||||............+...... ...+|++
T Consensus 8 lvG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~-~~~~d~v 84 (272)
T 3b1v_A 8 LIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLL-SQRADSI 84 (272)
T ss_dssp EECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHH-TTCCSEE
T ss_pred EECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHh-cCCCCEE
Confidence 999999999999999999874 4788999998887777776 788999999996432212222222222221 1479999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~ 275 (409)
++|+|+++. ..... +...+.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.|+++|+++|.
T Consensus 85 i~V~D~t~~-e~~~~-~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg-~~vi~~SA~~g~gi~el~~~i~ 159 (272)
T 3b1v_A 85 LNVVDATNL-ERNLY-LTTQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG-VPVVATSALKQTGVDQVVKKAA 159 (272)
T ss_dssp EEEEEGGGH-HHHHH-HHHHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT-SCEEECBTTTTBSHHHHHHHHH
T ss_pred EEEecCCch-HhHHH-HHHHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC-CCEEEEEccCCCCHHHHHHHHH
Confidence 999999863 22222 2223333 57999999999998532211101111111123 3799999999999999999999
Q ss_pred hhCCC
Q 015293 276 TKLPL 280 (409)
Q Consensus 276 ~~l~~ 280 (409)
+.+..
T Consensus 160 ~~~~~ 164 (272)
T 3b1v_A 160 HTTTS 164 (272)
T ss_dssp HSCTT
T ss_pred HHHhh
Confidence 98754
No 61
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.82 E-value=5.7e-20 Score=161.48 Aligned_cols=152 Identities=20% Similarity=0.244 Sum_probs=102.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|+|||||+|+|++..+.. ...+.++.+.....+..++ ..+.+|||||. ..+..+. ..++..+|
T Consensus 19 v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~~~~-------~~~~~~~d 88 (179)
T 2y8e_A 19 FLGEQSVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ--ERFRSLI-------PSYIRDST 88 (179)
T ss_dssp EEESTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGGGGS-------HHHHHTCS
T ss_pred EECCCCCCHHHHHHHHHcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEECCCc--HHHHHHH-------HHHhcCCC
Confidence 99999999999999999877642 3344445455444444444 57999999994 3333332 23467899
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
++++|+|++++. .....++.........+.|+++|+||+|+..... ........... + .+++++||++|.|+++
T Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~~~~i~~ 166 (179)
T 2y8e_A 89 VAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-N-VMFIETSAKAGYNVKQ 166 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHH-T-CEEEEEBTTTTBSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHc-C-CeEEEEeCCCCCCHHH
Confidence 999999998653 2223333333222125789999999999864322 12222222222 2 3799999999999999
Q ss_pred HHHHHHhhCC
Q 015293 270 IRDWILTKLP 279 (409)
Q Consensus 270 L~~~L~~~l~ 279 (409)
++++|.+.++
T Consensus 167 l~~~l~~~~~ 176 (179)
T 2y8e_A 167 LFRRVAAALP 176 (179)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 62
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.82 E-value=5.8e-20 Score=162.61 Aligned_cols=156 Identities=19% Similarity=0.145 Sum_probs=102.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~--~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+++|++..+. .....|+.+.....+. .....+.+|||||.. .+..+ ...++..+|
T Consensus 10 ~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~~~~~d 78 (186)
T 1mh1_A 10 VVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE--DYDRL-------RPLSYPQTD 78 (186)
T ss_dssp EECSTTSSHHHHHHHHHHSSCC--SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSG--GGTTT-------GGGGCTTCS
T ss_pred EECCCCCCHHHHHHHHHcCCCC--CCcCCcccceeEEEEEECCEEEEEEEEECCCCH--hHHHH-------HHHhccCCc
Confidence 9999999999999999987653 3333444333332333 334567899999953 33322 234578999
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHH-------------HHHHHHhcCCCceEEE
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTDVDEVIP 258 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~-------------~~~~~~~~~~~~~iv~ 258 (409)
++++|+|++++.. .....+...+.....+.|+++|+||+|+........ ....+....+..++++
T Consensus 79 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 158 (186)
T 1mh1_A 79 VSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 158 (186)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 9999999987542 222123333333224799999999999865432111 1111222234458999
Q ss_pred cccCCCCCHHHHHHHHHhhCCCCC
Q 015293 259 VSAKYGHGVEDIRDWILTKLPLGP 282 (409)
Q Consensus 259 iSA~~g~gi~~L~~~L~~~l~~~~ 282 (409)
+||++|.|+++|+++|.+.+...+
T Consensus 159 ~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 159 CSALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp CCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred ecCCCccCHHHHHHHHHHHHhccc
Confidence 999999999999999999886544
No 63
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.82 E-value=1.3e-19 Score=160.19 Aligned_cols=153 Identities=15% Similarity=0.183 Sum_probs=105.4
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
..+ ++|.+|||||||+|+|++..+....++.+.+.. .+..++..+.+|||||.. .+..+ +..++..
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~~~~ 85 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE----TLSYKNLKLNVWDLGGQT--SIRPY-------WRCYYAD 85 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE----EEEETTEEEEEEEEC------CCTT-------GGGTTTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceE----EEEECCEEEEEEECCCCH--hHHHH-------HHHHhcc
Confidence 445 999999999999999998887655566654432 234467899999999953 22222 3345789
Q ss_pred cceEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHHhc---CCCceEEEcccCCCC
Q 015293 192 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKYGH 265 (409)
Q Consensus 192 aDvillVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~---~~~~~iv~iSA~~g~ 265 (409)
+|++++|+|++++. .....++...+... ..+.|+++|+||+|+............+... ....+++++||++|.
T Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (183)
T 1moz_A 86 TAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGE 165 (183)
T ss_dssp EEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence 99999999998764 23334455444421 2678999999999997643333333333211 122378999999999
Q ss_pred CHHHHHHHHHhhC
Q 015293 266 GVEDIRDWILTKL 278 (409)
Q Consensus 266 gi~~L~~~L~~~l 278 (409)
|+++++++|.+.+
T Consensus 166 gi~~l~~~l~~~~ 178 (183)
T 1moz_A 166 GITEGLDWLIDVI 178 (183)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 64
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.82 E-value=5e-20 Score=168.19 Aligned_cols=159 Identities=19% Similarity=0.185 Sum_probs=102.5
Q ss_pred EEecCCCChHHHHHHHhCCccee-eecCCCceEEEEEEEEeCCC-eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-v~~~~~tt~~~~~~~~~~~~-~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|+|++..+.. ...+.+++..........+. ..+.+|||||. ..+..+.. .++..+|
T Consensus 16 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~~~-------~~~~~~d 86 (218)
T 4djt_A 16 LIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ--EKKAVLKD-------VYYIGAS 86 (218)
T ss_dssp EECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSG--GGTSCCCH-------HHHTTCS
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCc--hhhchHHH-------HHhhcCC
Confidence 99999999999999999776543 23444444443333222222 67999999994 33333332 2367899
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~-~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
++++|+|++++.. ....++.........+.|+++|+||+|+.....+. .....+.... ..+++++||++|.|++++
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~g~gv~~l 165 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGK-NYEYFEISAKTAHNFGLP 165 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTC-CCEEEEEBTTTTBTTTHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc-CCcEEEEecCCCCCHHHH
Confidence 9999999987642 22222222222112468999999999997543221 1222222222 347999999999999999
Q ss_pred HHHHHhhCCCCCCC
Q 015293 271 RDWILTKLPLGPAY 284 (409)
Q Consensus 271 ~~~L~~~l~~~~~~ 284 (409)
+++|.+.+......
T Consensus 166 ~~~l~~~~~~~~~~ 179 (218)
T 4djt_A 166 FLHLARIFTGRPDL 179 (218)
T ss_dssp HHHHHHHHHCCTTC
T ss_pred HHHHHHHHhccccc
Confidence 99999887654433
No 65
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.82 E-value=1.8e-21 Score=192.10 Aligned_cols=207 Identities=19% Similarity=0.229 Sum_probs=135.5
Q ss_pred EEecCCCChHHHHHHHhCCcce-----eeecCCC----------------------ceEEE-------------------
Q 015293 116 VLGKPNVGKSTLANQMIGQKLS-----IVTNKPQ----------------------TTRHR------------------- 149 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~-----~v~~~~~----------------------tt~~~------------------- 149 (409)
|+|.||||||||+|+|+|.++. +++..|+ +|++.
T Consensus 36 vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~~~gi 115 (353)
T 2x2e_A 36 VVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGI 115 (353)
T ss_dssp EECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTTTTCC
T ss_pred EECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcccCCCc
Confidence 9999999999999999998875 4455555 22210
Q ss_pred -----EEEEEeCCCeeEEEEeCCCCchhh----hhhHhHHHHHHHHHhh-cCcceEEEEeeCCCCCChHHH-HHHHHhcc
Q 015293 150 -----ILGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAG-INADCIVVLVDACKAPERIDE-ILEEGVGD 218 (409)
Q Consensus 150 -----~~~~~~~~~~~i~liDtpG~~~~~----~~~l~~~~~~~~~~~~-~~aDvillVvD~~~~~~~~~~-~l~~~l~~ 218 (409)
...+...++.++.||||||+.... ...+...+...+..++ ..++++++|+|++......+. .++..+..
T Consensus 116 ~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~ 195 (353)
T 2x2e_A 116 SPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDP 195 (353)
T ss_dssp CCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCT
T ss_pred ccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCc
Confidence 011122235689999999986421 1122222333344444 445677778888765544433 25555544
Q ss_pred CCCCCCEEEEEecCCCCChhh-HHHHHHH--HHhcCCCceEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCccccCchH
Q 015293 219 HKDKLPILLVLNKKDLIKPGE-IAKKLEW--YEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPE 295 (409)
Q Consensus 219 ~~~~~p~ilvlNK~Dl~~~~~-~~~~~~~--~~~~~~~~~iv~iSA~~g~gi~~L~~~L~~~l~~~~~~~~~~~~t~~~~ 295 (409)
.+.|+++|+||+|+..... ....... +....++.+++++||++|.|+++|++++.+ +.++.++.+.+++.+.
T Consensus 196 --~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~---e~~~f~~~~~~~~~~~ 270 (353)
T 2x2e_A 196 --QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA---ERKFFLSHPSYRHLAD 270 (353)
T ss_dssp --TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH---HHHHHHHCTTTGGGGG
T ss_pred --CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH---HHHHhccCCcccccHH
Confidence 6799999999999975432 1221110 000123457889999999999999999986 3334444455555666
Q ss_pred H---HHHHHHHHHHHHhhcCCCCCc----------eeEEEEEEEE
Q 015293 296 R---FFVGEIIREKIFMQYRNEVPY----------ACQVNVVSYK 327 (409)
Q Consensus 296 r---~~i~EiiRe~i~~~~~~eipy----------s~~v~v~~~~ 327 (409)
+ +.+.+++|++++.++++++|| ++.+.+..+.
T Consensus 271 r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~~~~ 315 (353)
T 2x2e_A 271 RMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYK 315 (353)
T ss_dssp GCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 6 889999999999999999999 7766665554
No 66
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.81 E-value=2.5e-19 Score=160.40 Aligned_cols=152 Identities=20% Similarity=0.247 Sum_probs=100.0
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC---------------------------------
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--------------------------------- 158 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--------------------------------- 158 (409)
.++ ++|.+|||||||+|+|++..+. ....+.+..+.....+..++
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDTFH-ENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNY 86 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSCEEEEEEEETTC-------------------------------CC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-CCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccc
Confidence 345 9999999999999999988754 12222222333333333333
Q ss_pred ------eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEe
Q 015293 159 ------YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLN 230 (409)
Q Consensus 159 ------~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlN 230 (409)
..+.||||||. ..+..+ ...++..+|++++|+|++++.. ....++...... ...|+++|+|
T Consensus 87 ~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~--~~~piilv~N 155 (208)
T 3clv_A 87 NENLCNIKFDIWDTAGQ--ERYASI-------VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS--SNYIIILVAN 155 (208)
T ss_dssp CTTTCEEEEEEEECTTG--GGCTTT-------HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH--SCCEEEEEEE
T ss_pred cCccceeEEEEEECCCc--HHHHHH-------HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh--CCCcEEEEEE
Confidence 78999999994 333333 3344789999999999987642 223333333332 3499999999
Q ss_pred cCCCCC-hhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHHhhC
Q 015293 231 KKDLIK-PGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 231 K~Dl~~-~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~~~l 278 (409)
|+|+.. .........+... .+ .+++++||++|.|+++++++|.+.+
T Consensus 156 K~D~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 156 KIDKNKFQVDILEVQKYAQD-NN-LLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp CTTCC-CCSCHHHHHHHHHH-TT-CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CCCcccccCCHHHHHHHHHH-cC-CcEEEEecCCCCCHHHHHHHHHHHH
Confidence 999422 1122333333333 23 3899999999999999999998754
No 67
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.81 E-value=6.1e-20 Score=164.59 Aligned_cols=153 Identities=16% Similarity=0.104 Sum_probs=103.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|+|++..+. ....+|+.......+..++ ..+.+|||||. +.+..+ ...++..+|
T Consensus 28 ~vG~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~~~~d 96 (194)
T 3reg_A 28 VVGDGAVGKTCLLLAFSKGEIP--TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ--EEYDRL-------RPLSYADSD 96 (194)
T ss_dssp EECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGTTT-------GGGGCTTCS
T ss_pred EECcCCCCHHHHHHHHhcCCCC--CccCCeeeeeeEEEEEECCEEEEEEEEECCCc--HHHHHH-------hHhhccCCc
Confidence 9999999999999999988753 4444555544444444443 55799999994 333333 334578999
Q ss_pred eEEEEeeCCCCCChHH--HHHHHHhccCCCCCCEEEEEecCCCCCh----hhHHHHHHHHHhcCCCceEEEcccCCCCCH
Q 015293 194 CIVVLVDACKAPERID--EILEEGVGDHKDKLPILLVLNKKDLIKP----GEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 194 villVvD~~~~~~~~~--~~l~~~l~~~~~~~p~ilvlNK~Dl~~~----~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi 267 (409)
++++|+|++++..... ..+...+.....+.|+++|+||+|+... ......... ....+...++++||++|.|+
T Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi 175 (194)
T 3reg_A 97 VVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDL-CQKLGCVAYIEASSVAKIGL 175 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHH-HHHHTCSCEEECBTTTTBSH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHH-HHhcCCCEEEEeecCCCCCH
Confidence 9999999987542211 2233333332357999999999998642 111222222 22224434999999999999
Q ss_pred HHHHHHHHhhCCC
Q 015293 268 EDIRDWILTKLPL 280 (409)
Q Consensus 268 ~~L~~~L~~~l~~ 280 (409)
++++++|.+.+..
T Consensus 176 ~~l~~~l~~~i~~ 188 (194)
T 3reg_A 176 NEVFEKSVDCIFS 188 (194)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987643
No 68
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.81 E-value=5.9e-20 Score=168.89 Aligned_cols=157 Identities=20% Similarity=0.217 Sum_probs=102.2
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceee-ecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v-~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
.++ |+|.+|||||||+++++...+... .++.+................+.||||+| ++.+..+.. .+++
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaG--qe~~~~l~~-------~~~~ 84 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG--LERFRSLIP-------SYIR 84 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSC--TTTCGGGHH-------HHHT
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCC--chhhhhHHH-------HHhc
Confidence 455 999999999999999997765321 12222222222222333446789999999 556665543 3478
Q ss_pred CcceEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCC
Q 015293 191 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHG 266 (409)
Q Consensus 191 ~aDvillVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~g 266 (409)
.+|++++|+|.++.. .....|+.........+.|++||+||+|+..... ..+...+... .+ .++++|||++|.|
T Consensus 85 ~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~-~~-~~~~e~SAktg~n 162 (216)
T 4dkx_A 85 DSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKE-LN-VMFIETSAKAGYN 162 (216)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHH-HT-CEEEEEBTTTTBS
T ss_pred cccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHH-hC-CeeEEEeCCCCcC
Confidence 999999999998754 3334444443332236789999999999865322 1222222222 23 3689999999999
Q ss_pred HHHHHHHHHhhCCC
Q 015293 267 VEDIRDWILTKLPL 280 (409)
Q Consensus 267 i~~L~~~L~~~l~~ 280 (409)
|+++|+.|++.+..
T Consensus 163 V~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 163 VKQLFRRVAAALPG 176 (216)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998864
No 69
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.81 E-value=1.2e-19 Score=159.48 Aligned_cols=153 Identities=22% Similarity=0.233 Sum_probs=100.5
Q ss_pred EEecCCCChHHHHHHHhCCcceee-ecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v-~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|.+|||||||+|+|++..+... .+..+.+.......+......+.+|||||. ..+..+ +..++..+|+
T Consensus 20 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~~~~~d~ 90 (179)
T 1z0f_A 20 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ--ERFRAV-------TRSYYRGAAG 90 (179)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTG--GGTCHH-------HHHHHHTCSE
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCC--hHhhhh-------HHHHhccCCE
Confidence 999999999999999998876421 222333333333333334468999999994 333332 3445779999
Q ss_pred EEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 195 IVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 195 illVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
+++|+|++++.. ....++.........+.|+++|+||+|+..... ......+... .+ .+++++||++|.|++++
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~gi~~l 168 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE-NG-LLFLEASAKTGENVEDA 168 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-TT-CEEEECCTTTCTTHHHH
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH-cC-CEEEEEeCCCCCCHHHH
Confidence 999999987532 222233222221125789999999999964322 2222233322 23 47999999999999999
Q ss_pred HHHHHhhCC
Q 015293 271 RDWILTKLP 279 (409)
Q Consensus 271 ~~~L~~~l~ 279 (409)
+++|.+.+.
T Consensus 169 ~~~l~~~i~ 177 (179)
T 1z0f_A 169 FLEAAKKIY 177 (179)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999987653
No 70
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.81 E-value=1.1e-19 Score=160.03 Aligned_cols=152 Identities=19% Similarity=0.263 Sum_probs=103.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|+|++..+ .....+|+.......+..++ ..+.+|||||. ..+..+.. .++..+|
T Consensus 14 v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~~~~~-------~~~~~~d 82 (181)
T 2fn4_A 14 VVGGGGVGKSALTIQFIQSYF--VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQ--EEFGAMRE-------QYMRAGH 82 (181)
T ss_dssp EEECTTSSHHHHHHHHHHSSC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCT--TTTSCCHH-------HHHHHCS
T ss_pred EECCCCCCHHHHHHHHHhCcC--ccccCCCcCceEEEEEEECCEEEEEEEEECCCc--hhhHHHHH-------HHHhhCC
Confidence 999999999999999998865 35566666665555555554 57889999994 33333322 2356799
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~-~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
++++|+|+++.. .....++...++.. ..+.|+++|+||+|+.....+ ......+....+ .+++++||++|.|+++
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~ 161 (181)
T 2fn4_A 83 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHH-VAYFEASAKLRLNVDE 161 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEECBTTTTBSHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-CeEEEecCCCCCCHHH
Confidence 999999998753 22223333332211 257899999999998653221 111222222223 3799999999999999
Q ss_pred HHHHHHhhCC
Q 015293 270 IRDWILTKLP 279 (409)
Q Consensus 270 L~~~L~~~l~ 279 (409)
++++|.+.+.
T Consensus 162 l~~~l~~~~~ 171 (181)
T 2fn4_A 162 AFEQLVRAVR 171 (181)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987663
No 71
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.81 E-value=1.1e-19 Score=164.81 Aligned_cols=155 Identities=18% Similarity=0.131 Sum_probs=105.2
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhh
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 189 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~ 189 (409)
.++ ++|.+|||||||++++++..+. ....+|+.+.....+..++ ..+.+|||||. +.+..+ ...++
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 99 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL--EDYDRL-------RPLSY 99 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC--C-CCCCSEEEEEEEEECC-CEEEEEEEEECCS--GGGTTT-------GGGGC
T ss_pred EEEEEECcCCCCHHHHHHHHHhCCCC--CCcCCeecceeEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHHHh
Confidence 344 9999999999999999987653 4555666666555555554 45669999995 333322 33457
Q ss_pred cCcceEEEEeeCCCCCChHH--HHHHHHhccCCCCCCEEEEEecCCCCChhhHHH-------------HHHHHHhcCCCc
Q 015293 190 INADCIVVLVDACKAPERID--EILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTDVD 254 (409)
Q Consensus 190 ~~aDvillVvD~~~~~~~~~--~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~-------------~~~~~~~~~~~~ 254 (409)
..+|++++|+|++++..... ..+...+.....+.|+++|+||+|+........ ....+....+..
T Consensus 100 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 179 (204)
T 4gzl_A 100 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 179 (204)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCc
Confidence 89999999999987542221 123333333225799999999999976433211 111222333455
Q ss_pred eEEEcccCCCCCHHHHHHHHHhhC
Q 015293 255 EVIPVSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 255 ~iv~iSA~~g~gi~~L~~~L~~~l 278 (409)
+++++||++|.|+++++++|.+.+
T Consensus 180 ~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 180 KYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHTT
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHh
Confidence 799999999999999999998754
No 72
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.81 E-value=1e-19 Score=165.06 Aligned_cols=155 Identities=19% Similarity=0.171 Sum_probs=102.0
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhh
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 189 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~ 189 (409)
..+ ++|.+|||||||+|+|++..+. ....+..+.+.....+..++ ..+.||||||. ..+..+ +..++
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~~ 90 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ--ERFRTI-------TTAYY 90 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC-CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTG--GGGTCC-------CHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcccceEEEEEEEECCEEEEEEEEeCCCc--HHHHHH-------HHHHh
Confidence 344 9999999999999999987764 23334444444444444454 68999999994 333333 23346
Q ss_pred cCcceEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh-HHHHHHHHHhcCCCceEEEcccCCCCC
Q 015293 190 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHG 266 (409)
Q Consensus 190 ~~aDvillVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~-~~~~~~~~~~~~~~~~iv~iSA~~g~g 266 (409)
..+|++++|+|++++. .....++.........+.|+++|+||+|+..... .......... .+ .+++++||++|.|
T Consensus 91 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~g 168 (213)
T 3cph_A 91 RGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKE-LG-IPFIESSAKNDDN 168 (213)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHH-HT-CCEEECBTTTTBS
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHH-cC-CEEEEEeCCCCCC
Confidence 8999999999998753 1222333332222224789999999999953211 1111222222 22 3799999999999
Q ss_pred HHHHHHHHHhhCC
Q 015293 267 VEDIRDWILTKLP 279 (409)
Q Consensus 267 i~~L~~~L~~~l~ 279 (409)
+++++++|.+.+.
T Consensus 169 i~~l~~~l~~~~~ 181 (213)
T 3cph_A 169 VNEIFFTLAKLIQ 181 (213)
T ss_dssp SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 73
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.81 E-value=1.3e-19 Score=160.64 Aligned_cols=152 Identities=21% Similarity=0.189 Sum_probs=101.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|+|++..+.. ...+..+.+.....+..++ ..+.+|||||.. .+. ..+..++..+|
T Consensus 15 v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~-------~~~~~~~~~~d 84 (186)
T 2bme_A 15 VIGNAGTGKSCLLHQFIEKKFKD-DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE--RFR-------SVTRSYYRGAA 84 (186)
T ss_dssp EEESTTSSHHHHHHHHHHSSCCT-TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG--GGH-------HHHHTTSTTCS
T ss_pred EECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcH--HHH-------HHHHHHHhcCC
Confidence 99999999999999999887653 2233344444444444444 689999999953 322 23456688999
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
++++|+|++++.. ....++.........+.|+++|+||+|+..... .......... .+ .+++++||++|.|+++
T Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~gi~~ 162 (186)
T 2bme_A 85 GALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQE-NE-LMFLETSALTGENVEE 162 (186)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TT-CEEEECCTTTCTTHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH-cC-CEEEEecCCCCCCHHH
Confidence 9999999987542 122233222211126789999999999964322 1222222222 23 4799999999999999
Q ss_pred HHHHHHhhCC
Q 015293 270 IRDWILTKLP 279 (409)
Q Consensus 270 L~~~L~~~l~ 279 (409)
++++|.+.+.
T Consensus 163 l~~~l~~~~~ 172 (186)
T 2bme_A 163 AFVQCARKIL 172 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 74
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.81 E-value=9.5e-20 Score=163.03 Aligned_cols=152 Identities=18% Similarity=0.188 Sum_probs=101.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeec-CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~-~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
|+|.+|||||||+|+|++..+..... ..+.+.......+...+..+.+|||||.. .+..+ ...++..+|+
T Consensus 30 v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~~~~~d~ 100 (193)
T 2oil_A 30 LIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE--RYRAI-------TSAYYRGAVG 100 (193)
T ss_dssp EESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCC--TTCTT-------HHHHHTTCCE
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCch--hhhhh-------hHHHhccCCE
Confidence 99999999999999999987654322 22333333333344455789999999963 33333 2334789999
Q ss_pred EEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 195 IVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 195 illVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
+++|+|++++.. ....++.........+.|+++|+||+|+..... ......+.. ..+ .+++++||++|.|++++
T Consensus 101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~-~~~~~~Sa~~~~gi~~l 178 (193)
T 2oil_A 101 ALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAE-NNG-LLFLETSALDSTNVELA 178 (193)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-HTT-CEEEEECTTTCTTHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHH-HcC-CEEEEEeCCCCCCHHHH
Confidence 999999987542 222333333322225789999999999965321 222222222 223 37999999999999999
Q ss_pred HHHHHhhC
Q 015293 271 RDWILTKL 278 (409)
Q Consensus 271 ~~~L~~~l 278 (409)
+++|.+.+
T Consensus 179 ~~~l~~~i 186 (193)
T 2oil_A 179 FETVLKEI 186 (193)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
No 75
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=161.76 Aligned_cols=151 Identities=17% Similarity=0.209 Sum_probs=95.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|+|++..+... ..+..+.+.....+..++ ..+.+|||||. ..+..+ ...++..+|
T Consensus 31 vvG~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~~~~~~d 100 (192)
T 2il1_A 31 IIGSRGVGKTSLMERFTDDTFCEA-CKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ--ERFNSI-------TSAYYRSAK 100 (192)
T ss_dssp EECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCS--GGGHHH-------HHHHHHHCS
T ss_pred EECCCCCCHHHHHHHHhcCCCCcC-CCCccceeEEEEEEEECCeEEEEEEEeCCCc--HHHHHH-------HHHHhcCCC
Confidence 999999999999999998876532 223333333333333333 67999999994 333322 344567899
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhcc-CCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~-~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
++++|+|++++.. ....++ ..+.. ...+.|+++|+||+|+..... ...... +.......+++++||++|.|++
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~-~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~-~~~~~~~~~~~~~SA~~g~gi~ 178 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWM-KMIDKYASEDAELLLVGNKLDCETDREITRQQGEK-FAQQITGMRFCEASAKDNFNVD 178 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHH-HHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHH-HHHTSTTCEEEECBTTTTBSHH
T ss_pred EEEEEEECcCHHHHHHHHHHH-HHHHHhcCCCCcEEEEEECcccccccccCHHHHHH-HHHhcCCCeEEEEeCCCCCCHH
Confidence 9999999987542 122222 22222 125799999999999864322 122222 2222223589999999999999
Q ss_pred HHHHHHHhhC
Q 015293 269 DIRDWILTKL 278 (409)
Q Consensus 269 ~L~~~L~~~l 278 (409)
+++++|.+.+
T Consensus 179 ~l~~~l~~~i 188 (192)
T 2il1_A 179 EIFLKLVDDI 188 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 76
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.81 E-value=1.4e-19 Score=161.46 Aligned_cols=154 Identities=18% Similarity=0.223 Sum_probs=106.2
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
..+ ++|.+|||||||+|+|.+..+....++.+.+ ...+..++..+.+|||||.. .+..+ ...+++.
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~Dt~G~~--~~~~~-------~~~~~~~ 89 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVN----LETLQYKNISFEVWDLGGQT--GVRPY-------WRCYFSD 89 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCC----EEEEEETTEEEEEEEECCSS--SSCCC-------CSSSSTT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceE----EEEEEECCEEEEEEECCCCH--hHHHH-------HHHHhhc
Confidence 445 9999999999999999987765433433322 22344567899999999953 22222 2345789
Q ss_pred cceEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCceEEEcccCCCC
Q 015293 192 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGH 265 (409)
Q Consensus 192 aDvillVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~---~~~~~~iv~iSA~~g~ 265 (409)
+|++++|+|++++. .....++...+... ..+.|+++|+||+|+............+.. .....+++++||++|.
T Consensus 90 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 169 (189)
T 2x77_A 90 TDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGD 169 (189)
T ss_dssp CCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCcc
Confidence 99999999998764 33344555544431 157899999999999865333333333221 1112378999999999
Q ss_pred CHHHHHHHHHhhCC
Q 015293 266 GVEDIRDWILTKLP 279 (409)
Q Consensus 266 gi~~L~~~L~~~l~ 279 (409)
|+++++++|.+.+.
T Consensus 170 gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 170 GLVEGMDWLVERLR 183 (189)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 77
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.81 E-value=1.3e-19 Score=163.58 Aligned_cols=154 Identities=23% Similarity=0.228 Sum_probs=101.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
|+|.+|||||||+|+|++..+.. ...+..+.+.....+..+ ...+.||||||. ..+..+ ...++..+|
T Consensus 13 v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~~~~~d 82 (207)
T 1vg8_A 13 ILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ--ERFQSL-------GVAFYRGAD 82 (207)
T ss_dssp EECCTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEESSSCEEEEEEEEECSS--GGGSCS-------CCGGGTTCS
T ss_pred EECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEeCCCc--HHHHHh-------HHHHHhCCc
Confidence 99999999999999999887642 223333444444444444 368999999995 333322 234578999
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccC----CCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCH
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~----~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi 267 (409)
++++|+|++++.. ....++....... ..+.|+++|+||+|+............+.......+++++||++|.|+
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 83 CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999987531 2223332222211 146899999999999743221122222222123347999999999999
Q ss_pred HHHHHHHHhhCC
Q 015293 268 EDIRDWILTKLP 279 (409)
Q Consensus 268 ~~L~~~L~~~l~ 279 (409)
++++++|.+.+.
T Consensus 163 ~~l~~~l~~~~~ 174 (207)
T 1vg8_A 163 EQAFQTIARNAL 174 (207)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 78
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.81 E-value=1.9e-19 Score=182.58 Aligned_cols=146 Identities=16% Similarity=0.181 Sum_probs=103.1
Q ss_pred EEecCCCChHHHHHHHhCCcceeee------------------------------cCCCceEEEEEEEEeCCCeeEEEEe
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVT------------------------------NKPQTTRHRILGICSGPEYQMILYD 165 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~------------------------------~~~~tt~~~~~~~~~~~~~~i~liD 165 (409)
++|++|+|||||+|+|++....+.. ...+.|.+.....+..++.++.|||
T Consensus 22 iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~~~iiD 101 (439)
T 3j2k_7 22 FIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILD 101 (439)
T ss_pred EEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeEEEEEE
Confidence 9999999999999999765332211 2257788888888888889999999
Q ss_pred CCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCC-------hHHHHHHHHhccCCCCCC-EEEEEecCCCCCh
Q 015293 166 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE-------RIDEILEEGVGDHKDKLP-ILLVLNKKDLIKP 237 (409)
Q Consensus 166 tpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~-------~~~~~l~~~l~~~~~~~p-~ilvlNK~Dl~~~ 237 (409)
|||+. . +...+..++..||++|+|+|++++.. .++...+..+.. .+.| +|+|+||+|+...
T Consensus 102 TPGh~--~-------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 102 APGHK--S-------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPTV 170 (439)
T ss_pred CCChH--H-------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCccc
Confidence 99953 2 34556666889999999999998753 345555544444 4666 9999999999642
Q ss_pred h----hHHHH----HHHHHhcC----CCceEEEcccCCCCCHHHHHH
Q 015293 238 G----EIAKK----LEWYEKFT----DVDEVIPVSAKYGHGVEDIRD 272 (409)
Q Consensus 238 ~----~~~~~----~~~~~~~~----~~~~iv~iSA~~g~gi~~L~~ 272 (409)
. ..... ...+.... ...+++++||++|.|++++.+
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 1 11111 12221111 134799999999999999544
No 79
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=164.95 Aligned_cols=153 Identities=17% Similarity=0.130 Sum_probs=90.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|+|++..+. ....+|+.+.....+..+ ...+.+|||||. ..+..+ ...++..+|
T Consensus 39 vvG~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~~~~~~d 107 (214)
T 2j1l_A 39 LVGDGGCGKTSLLMVFADGAFP--ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ--DDYDRL-------RPLFYPDAS 107 (214)
T ss_dssp EEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC------------------------CEE
T ss_pred EECcCCCCHHHHHHHHHcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCc--hhhhHH-------HHHHhccCC
Confidence 9999999999999999987764 233334433333333333 357899999994 333322 234578999
Q ss_pred eEEEEeeCCCCCCh--HHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHH-------------HHHHHhcCCCceEEE
Q 015293 194 CIVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-------------LEWYEKFTDVDEVIP 258 (409)
Q Consensus 194 villVvD~~~~~~~--~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~-------------~~~~~~~~~~~~iv~ 258 (409)
++++|+|++++... ....+...+.....+.|+++|+||+|+......... ...+....+..++++
T Consensus 108 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 187 (214)
T 2j1l_A 108 VLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLE 187 (214)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEE
Confidence 99999999875321 111233333322257999999999999765432111 122222334458999
Q ss_pred cccCCCCCHHHHHHHHHhhCC
Q 015293 259 VSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 259 iSA~~g~gi~~L~~~L~~~l~ 279 (409)
+||++|.|+++++++|.+.+.
T Consensus 188 ~SA~~g~gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 188 CSARLHDNVHAVFQEAAEVAL 208 (214)
T ss_dssp CBTTTTBSHHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999987654
No 80
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.81 E-value=7.1e-20 Score=162.87 Aligned_cols=160 Identities=27% Similarity=0.345 Sum_probs=108.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|++|||||||+|+|++... .++..+++|.+.....+..++..+.+|||||............+...... ...+|++
T Consensus 12 lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-~~~~~~~ 89 (188)
T 2wjg_A 12 LIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII-NEKPDLV 89 (188)
T ss_dssp EECSTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHH-HHCCSEE
T ss_pred EECCCCCCHHHHHHHHhCCCc-cccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHh-ccCCCEE
Confidence 999999999999999999775 36778888888888888888899999999996432111111111111111 1368999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~ 275 (409)
++|+|+++. .....++ ..+.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.|+++|+++|.
T Consensus 90 i~v~d~~~~-~~~~~~~-~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~i~ 164 (188)
T 2wjg_A 90 VNIVDATAL-ERNLYLT-LQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILG-VKVVPLSAAKKMGIEELKKAIS 164 (188)
T ss_dssp EEEEEGGGH-HHHHHHH-HHHHT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT-SCEEECBGGGTBSHHHHHHHHH
T ss_pred EEEecchhH-HHHHHHH-HHHHh--cCCCEEEEEEhhhccccccchHHHHHHHHHhC-CCeEEEEecCCCCHHHHHHHHH
Confidence 999998752 2222333 33333 57899999999998533211111111111112 3789999999999999999999
Q ss_pred hhCCCCC
Q 015293 276 TKLPLGP 282 (409)
Q Consensus 276 ~~l~~~~ 282 (409)
+.+....
T Consensus 165 ~~~~~~~ 171 (188)
T 2wjg_A 165 IAVKDKK 171 (188)
T ss_dssp HHHTTC-
T ss_pred HHHHhcc
Confidence 9886543
No 81
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.81 E-value=1.2e-19 Score=157.32 Aligned_cols=152 Identities=18% Similarity=0.207 Sum_probs=99.2
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
.+ ++|.+|+|||||+|+|++..+. ....+|+.......+..+ ...+.+|||||. ..+..+ ...++.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~~-------~~~~~~ 74 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ--EDYAAI-------RDNYFR 74 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----CHHH-------HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhCccC--CCCCCCcceEEEEEEEECCEEEEEEEEECCCc--chhHHH-------HHHHhh
Confidence 44 9999999999999999988753 344444444433333333 357999999994 333222 334467
Q ss_pred CcceEEEEeeCCCCCC--hHHHHHHHHhccC-CCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCC
Q 015293 191 NADCIVVLVDACKAPE--RIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGH 265 (409)
Q Consensus 191 ~aDvillVvD~~~~~~--~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~ 265 (409)
.+|++++|+|++++.. ....++....... ..+.|+++|+||+|+..... ........... + .+++++||++|.
T Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~~~ 152 (168)
T 1u8z_A 75 SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQW-N-VNYVETSAKTRA 152 (168)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHH-T-CEEEECCTTTCT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHc-C-CeEEEeCCCCCC
Confidence 8999999999986532 1222222222211 14799999999999864322 22222333222 2 379999999999
Q ss_pred CHHHHHHHHHhhC
Q 015293 266 GVEDIRDWILTKL 278 (409)
Q Consensus 266 gi~~L~~~L~~~l 278 (409)
|+++++++|.+.+
T Consensus 153 gi~~l~~~l~~~i 165 (168)
T 1u8z_A 153 NVDKVFFDLMREI 165 (168)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 82
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.81 E-value=5.7e-20 Score=159.22 Aligned_cols=150 Identities=20% Similarity=0.198 Sum_probs=97.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|++|+|||||+|+|++..+.. ....++.+.....+..+ ...+.+|||||. ..+..+ ...++..+|
T Consensus 8 v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~~-------~~~~~~~~~ 76 (167)
T 1kao_A 8 VLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGT--EQFASM-------RDLYIKNGQ 76 (167)
T ss_dssp EECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCT--TCCHHH-------HHHHHHHCS
T ss_pred EECCCCCCHHHHHHHHHcCCCcc--cCCCCcceeEEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHHHhccCC
Confidence 99999999999999999877542 33333333333333333 345899999994 333332 233467899
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccC-CCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
++++|+|++++.. ....++....... ..+.|+++|+||+|+..... ........... + .+++++||++|.|++
T Consensus 77 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~~~gi~ 154 (167)
T 1kao_A 77 GFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEW-G-CPFMETSAKSKTMVD 154 (167)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-T-SCEEEECTTCHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHh-C-CCEEEecCCCCcCHH
Confidence 9999999987532 2222332222211 15799999999999864322 11122222222 2 378999999999999
Q ss_pred HHHHHHHhhC
Q 015293 269 DIRDWILTKL 278 (409)
Q Consensus 269 ~L~~~L~~~l 278 (409)
+|+++|.+.+
T Consensus 155 ~l~~~l~~~~ 164 (167)
T 1kao_A 155 ELFAEIVRQM 164 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 83
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.81 E-value=2.3e-19 Score=162.36 Aligned_cols=153 Identities=20% Similarity=0.190 Sum_probs=98.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|+|++..+.. ...+..+.+.....+..++ ..+.+|||||. ..+..+ ...++..+|
T Consensus 34 vvG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~~~~d 103 (201)
T 2hup_A 34 LVGDASVGKTCVVQRFKTGAFSE-RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ--ERFRTI-------TQSYYRSAN 103 (201)
T ss_dssp EEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTC--GGGHHH-------HHHHHTTCS
T ss_pred EECcCCCCHHHHHHHHhhCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCc--HhHHHH-------HHHHHhhCC
Confidence 99999999999999999877542 1122222333333344444 68999999994 333322 345578999
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChh--hHHHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~--~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
++++|+|++++. .....++.........+.|+++|+||+|+.... .......+.. ..+..+++++||++|.|+++
T Consensus 104 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~~SA~~g~gi~~ 182 (201)
T 2hup_A 104 GAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAE-HYDILCAIETSAKDSSNVEE 182 (201)
T ss_dssp EEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-HTTCSEEEECBTTTTBSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHH-HcCCCEEEEEeCCCCCCHHH
Confidence 999999998653 222233333322212578999999999996422 1222222222 23444899999999999999
Q ss_pred HHHHHHhhCC
Q 015293 270 IRDWILTKLP 279 (409)
Q Consensus 270 L~~~L~~~l~ 279 (409)
++++|.+.+.
T Consensus 183 l~~~l~~~i~ 192 (201)
T 2hup_A 183 AFLRVATELI 192 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987664
No 84
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.81 E-value=2.2e-19 Score=161.89 Aligned_cols=152 Identities=14% Similarity=0.132 Sum_probs=100.9
Q ss_pred EEecCCCChHHHHHHHhCCcceee-ecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v-~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
|+|.+|||||||+|+|++..+... .+..+++..............+.+|||||.. .+. ..+..++..+|+
T Consensus 13 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~-------~~~~~~~~~~d~ 83 (203)
T 1zbd_A 13 IIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE--RYR-------TITTAYYRGAMG 83 (203)
T ss_dssp EECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG--GGH-------HHHHTTGGGCSE
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCch--hhc-------chHHHhhcCCCE
Confidence 999999999999999999876422 2333444333333333445689999999953 322 224566889999
Q ss_pred EEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 195 IVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 195 illVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
+++|+|++++.. ....++.........+.|+++|+||+|+..... .......... .+ .+++++||++|.|++++
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~gi~~l 161 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH-LG-FEFFEASAKDNINVKQT 161 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHH-HT-CEEEECBTTTTBSSHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHH-CC-CeEEEEECCCCCCHHHH
Confidence 999999987532 122233222221125789999999999975322 1222222222 23 37999999999999999
Q ss_pred HHHHHhhC
Q 015293 271 RDWILTKL 278 (409)
Q Consensus 271 ~~~L~~~l 278 (409)
+++|.+.+
T Consensus 162 ~~~l~~~i 169 (203)
T 1zbd_A 162 FERLVDVI 169 (203)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998755
No 85
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.81 E-value=1.3e-19 Score=161.75 Aligned_cols=152 Identities=14% Similarity=0.148 Sum_probs=100.9
Q ss_pred EEecCCCChHHHHHHHhCCcceee-ecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v-~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|.+|||||||+|+|++..+... .+..+++..............+.+|||||. ..+..+ ...++..+|+
T Consensus 27 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~~~~~d~ 97 (189)
T 2gf9_A 27 LIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQ--ERYRTI-------TTAYYRGAMG 97 (189)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSC--CSSCCS-------GGGGGTTCSE
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCc--HHHhhh-------HHHhccCCCE
Confidence 999999999999999998876432 333444443333333444568999999994 333322 3345789999
Q ss_pred EEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 195 IVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 195 illVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
+++|+|++++. .....++.........+.|+++|+||+|+..... ........... + .+++++||++|.|+++|
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~g~gi~~l 175 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDL-G-FEFFEASAKENINVKQV 175 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH-T-CEEEECBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHc-C-CeEEEEECCCCCCHHHH
Confidence 99999998653 2222233222221125789999999999965321 12222222222 3 37999999999999999
Q ss_pred HHHHHhhC
Q 015293 271 RDWILTKL 278 (409)
Q Consensus 271 ~~~L~~~l 278 (409)
+++|.+.+
T Consensus 176 ~~~l~~~i 183 (189)
T 2gf9_A 176 FERLVDVI 183 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
No 86
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.8e-19 Score=161.42 Aligned_cols=151 Identities=17% Similarity=0.172 Sum_probs=102.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+++|++..+. ....+|+.+.....+..++ ..+.+|||||.. .+..+ ...++..+|
T Consensus 23 v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~--~~~~~-------~~~~~~~~d 91 (194)
T 2atx_A 23 VVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE--DYDRL-------RPLSYPMTD 91 (194)
T ss_dssp EEECTTSSHHHHHHHHHHSSCC--CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSS--SSTTT-------GGGGCTTCS
T ss_pred EECCCCCCHHHHHHHHhcCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCc--chhHH-------HHHhcCCCC
Confidence 9999999999999999987653 4445555444444445544 678999999953 33322 234578999
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--------------HHHHHHHHHhcCCCceEE
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--------------IAKKLEWYEKFTDVDEVI 257 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--------------~~~~~~~~~~~~~~~~iv 257 (409)
++++|+|++++.. .....+...+.....+.|+++|+||+|+..... ......+... .+..+++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~ 170 (194)
T 2atx_A 92 VFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKE-IGACCYV 170 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHH-HTCSCEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHH-cCCcEEE
Confidence 9999999987532 222123333333225799999999999975421 1112222222 2344789
Q ss_pred EcccCCCCCHHHHHHHHHhhC
Q 015293 258 PVSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 258 ~iSA~~g~gi~~L~~~L~~~l 278 (409)
++||++|.|+++++++|.+.+
T Consensus 171 ~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 171 ECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998754
No 87
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.80 E-value=4.8e-19 Score=156.77 Aligned_cols=150 Identities=20% Similarity=0.231 Sum_probs=99.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|+|++..+. .....++..........++ ..+.+|||||. ..+..+.. .++..+|
T Consensus 23 v~G~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~~-------~~~~~~d 91 (183)
T 3kkq_A 23 VVGDGGVGKSALTIQFFQKIFV--DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQ--EEFSAMRE-------QYMRTGD 91 (183)
T ss_dssp EECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCSC--GGGCSSHH-------HHHHHCS
T ss_pred EECCCCCCHHHHHHHHHhCCCC--CCCCCCccceeEEEEEeCCcEEEEEEEECCCc--hhhHHHHH-------HHHhcCC
Confidence 9999999999999999987653 3444444443344444444 34667999994 34444432 3366799
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhcc-CCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccC-CCCCH
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAK-YGHGV 267 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~~-~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~-~g~gi 267 (409)
++++|+|++++. .....++...... ...+.|+++|+||+|+..... ........... + .+++++||+ +|.|+
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~~~Sa~~~~~~v 169 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKY-N-IPYIETSAKDPPLNV 169 (183)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHH-T-CCEEEEBCSSSCBSH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHh-C-CeEEEeccCCCCCCH
Confidence 999999998753 2222333322221 126789999999999865221 12222222222 2 479999999 99999
Q ss_pred HHHHHHHHhhC
Q 015293 268 EDIRDWILTKL 278 (409)
Q Consensus 268 ~~L~~~L~~~l 278 (409)
++++++|.+.+
T Consensus 170 ~~l~~~l~~~i 180 (183)
T 3kkq_A 170 DKTFHDLVRVI 180 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 88
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.80 E-value=4.1e-20 Score=181.19 Aligned_cols=166 Identities=24% Similarity=0.284 Sum_probs=116.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC-eeEEEEeCCCCchhh--hhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKK--IHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~-~~i~liDtpG~~~~~--~~~l~~~~~~~~~~~~~~a 192 (409)
|+|.||||||||+|+|++.+.. +++++.+|.++..+.+..++ ..+.+|||||+.... ...+... ....+..+
T Consensus 163 lvG~~nvGKSTLln~L~~~~~~-i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~----fl~~i~~~ 237 (342)
T 1lnz_A 163 LVGFPSVGKSTLLSVVSSAKPK-IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQ----FLRHIERT 237 (342)
T ss_dssp EESSTTSSHHHHHHHSEEECCE-ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHH----HHHHHHHC
T ss_pred eeCCCCCCHHHHHHHHHcCCCc-cccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHH----HHHHHHhc
Confidence 9999999999999999988754 57889999888888887765 889999999975421 1223333 33445679
Q ss_pred ceEEEEeeCCCC---C-ChHHHHHHHHhccCC---CCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCC
Q 015293 193 DCIVVLVDACKA---P-ERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 265 (409)
Q Consensus 193 DvillVvD~~~~---~-~~~~~~l~~~l~~~~---~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~ 265 (409)
|++|+|+|+++. . ......+...+..+. .++|+++|+||+|+....+. ............+++++||+++.
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~--~~~l~~~l~~~~~v~~iSA~tg~ 315 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAEN--LEAFKEKLTDDYPVFPISAVTRE 315 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHH--HHHHHHHCCSCCCBCCCSSCCSS
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHH--HHHHHHHhhcCCCEEEEECCCCc
Confidence 999999999862 2 111122333333221 47999999999999865421 11111222212478999999999
Q ss_pred CHHHHHHHHHhhCCCCCC--CCCCc
Q 015293 266 GVEDIRDWILTKLPLGPA--YYPKD 288 (409)
Q Consensus 266 gi~~L~~~L~~~l~~~~~--~~~~~ 288 (409)
|+++|+++|.+.+...++ .|+.+
T Consensus 316 gi~eL~~~l~~~l~~~~~~~~y~~e 340 (342)
T 1lnz_A 316 GLRELLFEVANQLENTPEFPLYDEE 340 (342)
T ss_dssp TTHHHHHHHHHHHTSCCCCCSSCSC
T ss_pred CHHHHHHHHHHHHhhCccccCCCcc
Confidence 999999999999876655 55544
No 89
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.80 E-value=8.4e-20 Score=161.37 Aligned_cols=153 Identities=24% Similarity=0.257 Sum_probs=101.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|+|++..+ .....+|+.......+..++ ..+.+|||||.. .+..+ ...++..+|
T Consensus 11 ~~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~~~~~~~~ 79 (181)
T 3t5g_A 11 ILGYRSVGKSSLTIQFVEGQF--VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQD--EYSIF-------PQTYSIDIN 79 (181)
T ss_dssp EEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCC--TTCCC-------CGGGTTTCS
T ss_pred EECcCCCCHHHHHHHHHcCCC--CCCCCCCccccEEEEEEECCEEEEEEEEeCCCch--hhhHH-------HHHHHhcCC
Confidence 999999999999999997664 34444555544444455554 577999999953 32222 224477899
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~--~~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
++++|+|+++.. .....++....... ..+.|+++|+||+|+.....+ ......... .+ .+++++||++|.|++
T Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~~v~ 157 (181)
T 3t5g_A 80 GYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAES-WN-AAFLESSAKENQTAV 157 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH-TT-CEEEECCTTSHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHH-hC-CcEEEEecCCCCCHH
Confidence 999999998643 12222222222221 157899999999998643221 222222222 23 379999999999999
Q ss_pred HHHHHHHhhCCCC
Q 015293 269 DIRDWILTKLPLG 281 (409)
Q Consensus 269 ~L~~~L~~~l~~~ 281 (409)
+++++|.+.+...
T Consensus 158 ~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 158 DVFRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999877543
No 90
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.80 E-value=1.5e-20 Score=189.06 Aligned_cols=161 Identities=28% Similarity=0.392 Sum_probs=112.1
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCe-eEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~-~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
..+ ++|++|+|||||+|+|++..+..++..+++|.+.....+...+. .+.+|||||+.+ +..+.....+.+..++.
T Consensus 35 ~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d--~~~l~~~~~~~~~~~l~ 112 (423)
T 3qq5_A 35 RYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDD--VGELGRLRVEKARRVFY 112 (423)
T ss_dssp EEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTC--CCTTCCCCHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCc--ccchhHHHHHHHHHHHh
Confidence 344 99999999999999999999887889999998877777666554 899999999643 33333333445667788
Q ss_pred CcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 191 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 191 ~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
.+|++|+|+|+ +.......+...+.. .+.|+++|+||+|+...... .....+....+ .+++++||++|.|+++|
T Consensus 113 ~aD~vllVvD~--~~~~~~~~~l~~l~~--~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g-~~v~~vSAktg~gI~eL 186 (423)
T 3qq5_A 113 RADCGILVTDS--APTPYEDDVVNLFKE--MEIPFVVVVNKIDVLGEKAE-ELKGLYESRYE-AKVLLVSALQKKGFDDI 186 (423)
T ss_dssp SCSEEEEECSS--SCCHHHHHHHHHHHH--TTCCEEEECCCCTTTTCCCT-HHHHHSSCCTT-CCCCCCSSCCTTSTTTH
T ss_pred cCCEEEEEEeC--CChHHHHHHHHHHHh--cCCCEEEEEeCcCCCCccHH-HHHHHHHHHcC-CCEEEEECCCCCCHHHH
Confidence 99999999999 445555666666665 58999999999999865443 22333333333 37899999999999999
Q ss_pred HHHHHhhCCCC
Q 015293 271 RDWILTKLPLG 281 (409)
Q Consensus 271 ~~~L~~~l~~~ 281 (409)
+++|.+.++..
T Consensus 187 ~~~L~~~l~~~ 197 (423)
T 3qq5_A 187 GKTISEILPGD 197 (423)
T ss_dssp HHHHHHHSCCC
T ss_pred HHHHHHhhhhh
Confidence 99999999654
No 91
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.80 E-value=5.9e-20 Score=162.65 Aligned_cols=151 Identities=13% Similarity=0.111 Sum_probs=79.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|+|++..+. ....+.++.+.....+..++ ..+.+|||||. ..+.. ....++..+|
T Consensus 13 v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~-------~~~~~~~~~d 82 (183)
T 2fu5_C 13 LIGDSGVGKTCVLFRFSEDAFN-STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ--ERFRT-------ITTAYYRGAM 82 (183)
T ss_dssp EECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC------------------CCTTTTTCS
T ss_pred EECCCCCCHHHHHHHHHhCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEcCCCC--hhhhh-------hHHHHHhcCC
Confidence 9999999999999999977653 23334445555444444454 78999999994 22222 2345578999
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
++++|+|++++.. ....++.........+.|+++|+||+|+..... ......+.... + .+++++||++|.|+++
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~~~Sa~~~~~i~~ 160 (183)
T 2fu5_C 83 GIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDY-G-IKFMETSAKANINVEN 160 (183)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHH-T-CEEEECCC---CCHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHc-C-CeEEEEeCCCCCCHHH
Confidence 9999999987532 222233222222125789999999999975321 12222222222 3 3799999999999999
Q ss_pred HHHHHHhhC
Q 015293 270 IRDWILTKL 278 (409)
Q Consensus 270 L~~~L~~~l 278 (409)
++++|.+.+
T Consensus 161 l~~~l~~~i 169 (183)
T 2fu5_C 161 AFFTLARDI 169 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
No 92
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=7e-20 Score=163.89 Aligned_cols=154 Identities=14% Similarity=0.149 Sum_probs=104.2
Q ss_pred eE-EEecCCCChHHHHHHHhCCccee-eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~-v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
++ |+|.+|||||||+|+|++..+.. ..+..+++..............+.|||||| +..+..+ ...++..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~~~-------~~~~~~~ 95 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAG--QERYRTI-------TTAYYRG 95 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHH--HHHCHHH-------HHHHHTT
T ss_pred EEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCC--hHHHHHH-------HHHHHcc
Confidence 44 99999999999999999876432 233445555555555566778999999999 4333322 4455789
Q ss_pred cceEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCH
Q 015293 192 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 192 aDvillVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi 267 (409)
+|++++|+|+++.. .....++.........+.|+++|+||+|+..... ...... +....+. +++++||++|.|+
T Consensus 96 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~-~~~~~Sa~~~~gi 173 (191)
T 3dz8_A 96 AMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQL-LAEQLGF-DFFEASAKENISV 173 (191)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHH-HHHHHTC-EEEECBTTTTBSH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHH-HHHHcCC-eEEEEECCCCCCH
Confidence 99999999998643 2222333222221125789999999999864321 111112 2222233 7999999999999
Q ss_pred HHHHHHHHhhC
Q 015293 268 EDIRDWILTKL 278 (409)
Q Consensus 268 ~~L~~~L~~~l 278 (409)
++++++|.+.+
T Consensus 174 ~~l~~~l~~~i 184 (191)
T 3dz8_A 174 RQAFERLVDAI 184 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 93
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=2.1e-19 Score=156.52 Aligned_cols=153 Identities=20% Similarity=0.242 Sum_probs=95.3
Q ss_pred EEecCCCChHHHHHHHhCCcceee-ecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v-~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|.+|||||||+|+|++..+... .+..+.+.. ...........+.+|||||.. .+..+ ...++..+|+
T Consensus 8 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~--~~~~~-------~~~~~~~~~~ 77 (172)
T 2erx_A 8 VFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH--QFPAM-------QRLSISKGHA 77 (172)
T ss_dssp EECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCS--SCHHH-------HHHHHHHCSE
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCch--hhHHH-------HHHhcccCCE
Confidence 999999999999999998765311 111111111 111222334578999999953 22222 2334677999
Q ss_pred EEEEeeCCCCC--ChHHHHHHHHhc--cCCCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 195 IVVLVDACKAP--ERIDEILEEGVG--DHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 195 illVvD~~~~~--~~~~~~l~~~l~--~~~~~~p~ilvlNK~Dl~~~~~~--~~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
+++|+|++++. .....++..... ....+.|+++|+||+|+.....+ .......... + .+++++||++|.|++
T Consensus 78 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~~~Sa~~~~gi~ 155 (172)
T 2erx_A 78 FILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTW-K-CAFMETSAKLNHNVK 155 (172)
T ss_dssp EEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-T-CEEEECBTTTTBSHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHh-C-CeEEEecCCCCcCHH
Confidence 99999998653 112222222111 11147899999999998643221 1112222222 2 378999999999999
Q ss_pred HHHHHHHhhCCC
Q 015293 269 DIRDWILTKLPL 280 (409)
Q Consensus 269 ~L~~~L~~~l~~ 280 (409)
+++++|.+.+..
T Consensus 156 ~l~~~l~~~~~~ 167 (172)
T 2erx_A 156 ELFQELLNLEKR 167 (172)
T ss_dssp HHHHHHHHTCCS
T ss_pred HHHHHHHHHHhh
Confidence 999999998763
No 94
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=162.48 Aligned_cols=154 Identities=19% Similarity=0.139 Sum_probs=99.7
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhh
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 189 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~ 189 (409)
..+ ++|.+|||||||+|+|++..+ ....++|+.+.....+..++ ..+.+|||||.. .+..+ ...++
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~~ 89 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNGY--PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQD--EFDKL-------RPLCY 89 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCST--TCSSS-------GGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCH--HHHHH-------hHhhc
Confidence 344 999999999999999998874 35556666665555555555 467799999953 33333 22357
Q ss_pred cCcceEEEEeeCCCCCChHH--HHHHHHhccCCCCCCEEEEEecCCCCChhh--------------HHHHHHHHHhcCCC
Q 015293 190 INADCIVVLVDACKAPERID--EILEEGVGDHKDKLPILLVLNKKDLIKPGE--------------IAKKLEWYEKFTDV 253 (409)
Q Consensus 190 ~~aDvillVvD~~~~~~~~~--~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--------------~~~~~~~~~~~~~~ 253 (409)
..+|++++|+|++++..... ..+...+.....+.|+++|+||+|+..... ...... +....+.
T Consensus 90 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~ 168 (201)
T 2q3h_A 90 TNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKL-LAEEIKA 168 (201)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-HHHHHTC
T ss_pred CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHH-HHHhcCC
Confidence 89999999999987542211 123332332225799999999999864321 111122 2222244
Q ss_pred ceEEEcccCCCCCHHHHHHHHHhhC
Q 015293 254 DEVIPVSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 254 ~~iv~iSA~~g~gi~~L~~~L~~~l 278 (409)
.+++++||++|.|+++++++|.+.+
T Consensus 169 ~~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 169 ASYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998765
No 95
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=163.10 Aligned_cols=152 Identities=19% Similarity=0.187 Sum_probs=94.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
|+|.+|||||||+|+|++..+... ..+..+.+.....+..++ ..+.||||||. ..+..+ +..++..+|
T Consensus 30 v~G~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~~~~~~d 99 (200)
T 2o52_A 30 VIGSAGTGKSCLLHQFIENKFKQD-SNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ--ERFRSV-------TRSYYRGAA 99 (200)
T ss_dssp EEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTH--HHHSCC-------CHHHHTTCS
T ss_pred EECcCCCCHHHHHHHHHhCCCCcc-CCCcccceeEEEEEEECCeeeEEEEEcCCCc--HhHHHH-------HHHHhccCC
Confidence 999999999999999998876532 222222223333333344 68999999993 333333 233478999
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
++++|+|++++. .....++.........+.|+++|+||+|+..... .......... .+ .+++++||++|.|+++
T Consensus 100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~~SA~~g~gi~~ 177 (200)
T 2o52_A 100 GALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQE-NE-LMFLETSALTGENVEE 177 (200)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TT-CEEEEECTTTCTTHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHH-cC-CEEEEEeCCCCCCHHH
Confidence 999999998754 2222333332221125789999999999864322 1222222222 22 4799999999999999
Q ss_pred HHHHHHhhCC
Q 015293 270 IRDWILTKLP 279 (409)
Q Consensus 270 L~~~L~~~l~ 279 (409)
++++|.+.+.
T Consensus 178 l~~~l~~~i~ 187 (200)
T 2o52_A 178 AFLKCARTIL 187 (200)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 96
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.80 E-value=7.3e-19 Score=173.57 Aligned_cols=160 Identities=26% Similarity=0.387 Sum_probs=114.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|.+|||||||+|+|++... .+...+++|.+.....+..++..+.+|||||+.+.....+..............+|++
T Consensus 172 lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~i 250 (357)
T 2e87_A 172 IAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLI 250 (357)
T ss_dssp EECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEE
T ss_pred EECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEE
Confidence 999999999999999999884 4677888888877777777788999999999755322222211112233344579999
Q ss_pred EEEeeCCCCC----ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHH
Q 015293 196 VVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 271 (409)
Q Consensus 196 llVvD~~~~~----~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~ 271 (409)
++|+|++++. .....++....... .++|+++|+||+|+.....+.......... ..+++++||++|+|+++|+
T Consensus 251 llV~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~NK~Dl~~~~~~~~~~~~~~~~--~~~~~~iSA~~g~gi~~l~ 327 (357)
T 2e87_A 251 IYIFDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVINKIDVADEENIKRLEKFVKEK--GLNPIKISALKGTGIDLVK 327 (357)
T ss_dssp EEEECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEECCTTTCCHHHHHHHHHHHHHT--TCCCEECBTTTTBTHHHHH
T ss_pred EEEEeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEEECcccCChHHHHHHHHHHHhc--CCCeEEEeCCCCcCHHHHH
Confidence 9999987653 22223333332221 379999999999998766554444433322 2478999999999999999
Q ss_pred HHHHhhCC
Q 015293 272 DWILTKLP 279 (409)
Q Consensus 272 ~~L~~~l~ 279 (409)
++|.+.+.
T Consensus 328 ~~i~~~l~ 335 (357)
T 2e87_A 328 EEIIKTLR 335 (357)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 97
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.80 E-value=4.4e-19 Score=153.25 Aligned_cols=150 Identities=21% Similarity=0.179 Sum_probs=97.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|+|||||+|+|++..+. ....+++.+.....+..+ ...+.+|||||.. .+..+ ...++..+|
T Consensus 8 v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~--~~~~~-------~~~~~~~~~ 76 (166)
T 2ce2_X 8 VVGAGGVGKSALTIQLIQNHFV--DECDPTIEDSYRKQVVIDGETCLLDILDTAGQE--EYSAM-------RDQYMRTGE 76 (166)
T ss_dssp EEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCS--SCCHH-------HHHHHHHCS
T ss_pred EECCCCCCHHHHHHHHHhCcCc--cccCCccceEEEEEEEECCEEEEEEEEECCCch--hhhHH-------HHHhhccCC
Confidence 9999999999999999987654 333444444333333333 3568899999953 33332 223466899
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccC-CCCCCEEEEEecCCCCChhh-HHHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~-~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
++++|+|+++... ....++....... ..+.|+++|+||+|+..... .......... .+ .+++++||++|.|+++
T Consensus 77 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~gi~~ 154 (166)
T 2ce2_X 77 GFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARS-YG-IPYIETSAKTRQGVED 154 (166)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH-HT-CCEEEECTTTCTTHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHH-cC-CeEEEecCCCCCCHHH
Confidence 9999999986532 1222222221111 14799999999999875321 1222222222 23 3799999999999999
Q ss_pred HHHHHHhhC
Q 015293 270 IRDWILTKL 278 (409)
Q Consensus 270 L~~~L~~~l 278 (409)
++++|.+.+
T Consensus 155 l~~~l~~~~ 163 (166)
T 2ce2_X 155 AFYTLVREI 163 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
No 98
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.80 E-value=1.6e-20 Score=194.07 Aligned_cols=111 Identities=22% Similarity=0.266 Sum_probs=83.9
Q ss_pred EEecCCCChHHHHHHHhCCccee---------------e------ecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI---------------V------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 174 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~---------------v------~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~ 174 (409)
|+|++|+|||||+|+|++....+ + ....+.|.......+.+++..++||||||+.+ +
T Consensus 18 IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~d--f 95 (528)
T 3tr5_A 18 IISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHAD--F 95 (528)
T ss_dssp EEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCSTT--C
T ss_pred EECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCchh--H
Confidence 99999999999999997322111 1 11234454444556677889999999999643 2
Q ss_pred hhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCCh
Q 015293 175 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 237 (409)
Q Consensus 175 ~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~ 237 (409)
...+..++..+|++|+|+|++++...+...++..+.. .++|+++|+||+|+...
T Consensus 96 -------~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~--~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 96 -------TEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL--RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp -------CHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT--TTCCEEEEEECTTSCCS
T ss_pred -------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCCccc
Confidence 2335667889999999999999888888777777766 68999999999999754
No 99
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.80 E-value=4.1e-19 Score=161.66 Aligned_cols=153 Identities=19% Similarity=0.246 Sum_probs=98.0
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC---CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhh
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP---EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 189 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~---~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~ 189 (409)
.+ ++|.+|||||||+++|++..+. ...+.++.+... +..+ +..+.+|||||.. .+.. . ....++
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~--~~~~---~---~~~~~~ 76 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQYR--DTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHE--SLRF---Q---LLDRFK 76 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC--CBCCCCSCEEEE--EECSSTTCCEEEEEECCCCH--HHHH---H---HHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcc--cccCCcceeeEE--EEecCCCccEEEEEECCCCh--hHHH---H---HHHHHH
Confidence 44 9999999999999999987753 344444444333 3433 6789999999953 2221 0 123347
Q ss_pred cCcceEEEEeeCCCCCC---hHHHHHHHHhcc---CCCCCCEEEEEecCCCCChhhHHHHHHHHH---------------
Q 015293 190 INADCIVVLVDACKAPE---RIDEILEEGVGD---HKDKLPILLVLNKKDLIKPGEIAKKLEWYE--------------- 248 (409)
Q Consensus 190 ~~aDvillVvD~~~~~~---~~~~~l~~~l~~---~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~--------------- 248 (409)
..+|++++|+|+++... ....++...+.. ...+.|+++|+||+|+............+.
T Consensus 77 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s 156 (214)
T 2fh5_B 77 SSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPS 156 (214)
T ss_dssp GGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC----
T ss_pred hhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccc
Confidence 89999999999986321 111223322211 125789999999999975433322221111
Q ss_pred --------h-cCC-------------CceEEEcccCCC------CCHHHHHHHHHhhC
Q 015293 249 --------K-FTD-------------VDEVIPVSAKYG------HGVEDIRDWILTKL 278 (409)
Q Consensus 249 --------~-~~~-------------~~~iv~iSA~~g------~gi~~L~~~L~~~l 278 (409)
. ..+ ..++++|||++| .||++++++|.+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 157 TLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp --------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred cccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 0 111 347899999999 99999999998753
No 100
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=2.4e-19 Score=162.61 Aligned_cols=152 Identities=20% Similarity=0.195 Sum_probs=100.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|+|++..+.. ...+..+.+.....+..++ ..+.+|||||. ..+. .....++..+|
T Consensus 31 lvG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~-------~~~~~~~~~~d 100 (201)
T 2ew1_A 31 LIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ--ERFR-------SITQSYYRSAN 100 (201)
T ss_dssp EEESTTSSHHHHHHHHHHSSCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGH-------HHHGGGSTTCS
T ss_pred EECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCc--HHHH-------HHHHHHHhcCC
Confidence 99999999999999999877542 2233333444444444444 57899999994 3322 23456688999
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
++++|+|++++.. ....++.........+.|+++|+||+|+..... ......+... .+ .+++++||++|.|+++
T Consensus 101 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~~Sa~~g~gv~~ 178 (201)
T 2ew1_A 101 ALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEA-QD-MYYLETSAKESDNVEK 178 (201)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHH-HT-CCEEECCTTTCTTHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH-cC-CEEEEEeCCCCCCHHH
Confidence 9999999987532 122333222221125789999999999964322 1122222222 12 3789999999999999
Q ss_pred HHHHHHhhCC
Q 015293 270 IRDWILTKLP 279 (409)
Q Consensus 270 L~~~L~~~l~ 279 (409)
++++|.+.+.
T Consensus 179 l~~~l~~~i~ 188 (201)
T 2ew1_A 179 LFLDLACRLI 188 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 101
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.80 E-value=5.4e-20 Score=162.42 Aligned_cols=156 Identities=19% Similarity=0.161 Sum_probs=94.7
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeC--CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhh
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 189 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~--~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~ 189 (409)
.++ ++|.+|+|||||++++++..+. ....+|+.+.....+.. ....+.+|||||. ..+..+ ...++
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~ 77 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ--EDYNRL-------RPLSY 77 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCC------------CBCCCC-------CEEECCCC---CTTTTT-------GGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCeeeeeEEEEEEECCEEEEEEEEECCCC--hhhhhh-------HHhhc
Confidence 344 9999999999999999987643 33444443332222222 2356779999994 333322 23457
Q ss_pred cCcceEEEEeeCCCCCCh--HHHHHHHHhccCCCCCCEEEEEecCCCCChhhH-----------HHHHHHHHhcCCCceE
Q 015293 190 INADCIVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-----------AKKLEWYEKFTDVDEV 256 (409)
Q Consensus 190 ~~aDvillVvD~~~~~~~--~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~-----------~~~~~~~~~~~~~~~i 256 (409)
..+|++++|+|++++... ....+...+.....+.|+++|+||+|+...... ......+....+..++
T Consensus 78 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 157 (182)
T 3bwd_D 78 RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAY 157 (182)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEE
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEE
Confidence 889999999999875422 221233333332247999999999998654332 1111222222244589
Q ss_pred EEcccCCCCCHHHHHHHHHhhCC
Q 015293 257 IPVSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 257 v~iSA~~g~gi~~L~~~L~~~l~ 279 (409)
+++||++|.|+++++++|.+.+.
T Consensus 158 ~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 158 IECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999987653
No 102
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.80 E-value=1.4e-19 Score=169.60 Aligned_cols=172 Identities=16% Similarity=0.142 Sum_probs=112.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCC-CceEEEEEEEEeCCCeeEEEEeCCCCchhhh---hhHhHHHHHHHHHhhcC
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILGICSGPEYQMILYDTPGIIEKKI---HMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~-~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~---~~l~~~~~~~~~~~~~~ 191 (409)
|+|.+|||||||+|+|++.+.......+ ++|+.........++..+.||||||+.+... ..+...+.+........
T Consensus 26 lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~ 105 (247)
T 3lxw_A 26 LVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPG 105 (247)
T ss_dssp EESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTC
T ss_pred EECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999887654433 5888888888888899999999999854221 11222233333444589
Q ss_pred cceEEEEeeCCCCCChHHHHHHHHhccC-C---CCCCEEEEEecCCCCChhh---H-----HHHHHHHHhcCCCceEEEc
Q 015293 192 ADCIVVLVDACKAPERIDEILEEGVGDH-K---DKLPILLVLNKKDLIKPGE---I-----AKKLEWYEKFTDVDEVIPV 259 (409)
Q Consensus 192 aDvillVvD~~~~~~~~~~~l~~~l~~~-~---~~~p~ilvlNK~Dl~~~~~---~-----~~~~~~~~~~~~~~~iv~i 259 (409)
+|++|+|+|+++ ....+..+.+.+... . .+.|+||++||+|+..... + .........+.. .++.+
T Consensus 106 ~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~--~~~~~ 182 (247)
T 3lxw_A 106 PHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGG--RVCAF 182 (247)
T ss_dssp CSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTT--CEEEC
T ss_pred CCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCC--eEEEE
Confidence 999999999985 444444444433321 1 2689999999999965321 1 112223333332 34444
Q ss_pred ccCC-----CCCHHHHHHHHHhhCCC-CCCCCCCccc
Q 015293 260 SAKY-----GHGVEDIRDWILTKLPL-GPAYYPKDIV 290 (409)
Q Consensus 260 SA~~-----g~gi~~L~~~L~~~l~~-~~~~~~~~~~ 290 (409)
++.. +.|+.+|++.|.+++++ ++.+|+.++.
T Consensus 183 ~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~~~ 219 (247)
T 3lxw_A 183 DNRATGREQEAQVEQLLGMVEGLVLEHKGAHYSNEVY 219 (247)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHH
T ss_pred eCCCCccccHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 4443 68999999999999874 6677877654
No 103
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.79 E-value=1.7e-19 Score=163.88 Aligned_cols=154 Identities=19% Similarity=0.132 Sum_probs=102.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+++|++..+. ....+|+.+.....+..+ ...+.+|||||. +.+..+ ...++..+|
T Consensus 14 i~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~~~~d 82 (212)
T 2j0v_A 14 TVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQ--EDYSRL-------RPLSYRGAD 82 (212)
T ss_dssp EEESTTSSHHHHHHHHHHSCCC--SSCCCSSCCCEEEEEECSSCEEEEEEECCCCC--CCCCC---------CGGGTTCS
T ss_pred EECCCCCCHHHHHHHHhcCCCC--ccCCCccceeEEEEEEECCEEEEEEEEECCCc--HHHHHH-------HHhhccCCC
Confidence 9999999999999999987653 344444444333333443 368999999995 333333 234578999
Q ss_pred eEEEEeeCCCCCCh--HHHHHHHHhccCCCCCCEEEEEecCCCCChhhH---------HHHHHHHHhcCCCceEEEcccC
Q 015293 194 CIVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI---------AKKLEWYEKFTDVDEVIPVSAK 262 (409)
Q Consensus 194 villVvD~~~~~~~--~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~---------~~~~~~~~~~~~~~~iv~iSA~ 262 (409)
++++|+|++++... ....+...+.....+.|+++|+||+|+...... ......+....+..+++++||+
T Consensus 83 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 162 (212)
T 2j0v_A 83 IFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSK 162 (212)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCC
Confidence 99999999875421 111233333332247999999999998654321 1112222222244589999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 015293 263 YGHGVEDIRDWILTKLPL 280 (409)
Q Consensus 263 ~g~gi~~L~~~L~~~l~~ 280 (409)
+|.|+++++++|.+.+..
T Consensus 163 ~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 163 TQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999987754
No 104
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.79 E-value=2.5e-19 Score=156.23 Aligned_cols=152 Identities=19% Similarity=0.210 Sum_probs=92.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|+|++.........+ ++.+.....+..+ ...+.+|||||... +... ....++..+|
T Consensus 7 ivG~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~------~~~~~~~~~d 77 (169)
T 3q85_A 7 LVGESGVGKSTLAGTFGGLQGDHAHEME-NSEDTYERRIMVDKEEVTLIVYDIWEQGD--AGGW------LQDHCLQTGD 77 (169)
T ss_dssp EECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC----------------CHHHHHCS
T ss_pred EECCCCCCHHHHHHHHHhccCcccccCC-CcCCeeeEEEEECCeEEEEEEEECCCccc--cchh------hhhhhhccCC
Confidence 9999999999999999987665433332 2333333333333 46788999999532 2210 1122356799
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhccCC-CCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
++++|+|++++. .....++........ .+.|+++|+||+|+..... .... ..+....+. +++++||++|.|++
T Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~~~v~ 155 (169)
T 3q85_A 78 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEG-RHLAGTLSC-KHIETSAALHHNTR 155 (169)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHH-HHHHHHTTC-EEEECBTTTTBSHH
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHH-HHHHHHcCC-cEEEecCccCCCHH
Confidence 999999998743 223344444333211 3799999999999864322 1222 222222333 89999999999999
Q ss_pred HHHHHHHhhC
Q 015293 269 DIRDWILTKL 278 (409)
Q Consensus 269 ~L~~~L~~~l 278 (409)
+++++|.+.+
T Consensus 156 ~l~~~l~~~i 165 (169)
T 3q85_A 156 ELFEGAVRQI 165 (169)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 105
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=3e-19 Score=162.13 Aligned_cols=156 Identities=21% Similarity=0.184 Sum_probs=99.7
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhh
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 189 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~ 189 (409)
.++ ++|.+|||||||+|+|++..+.. ...+|+.......+..++ ..+.+|||||.. .+..+ ...++
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~~ 94 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQE--DYDRL-------RPLSY 94 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCT--TCTTT-------GGGGC
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCCC--cCCCcccceEEEEEEECCEEEEEEEEECCCcH--HHHHH-------HHhhc
Confidence 345 99999999999999999887652 222232222222233333 578999999953 33222 23457
Q ss_pred cCcceEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHH-------------HHHHhcCCCc
Q 015293 190 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-------------EWYEKFTDVD 254 (409)
Q Consensus 190 ~~aDvillVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~-------------~~~~~~~~~~ 254 (409)
..+|++++|+|++++. ......+...+.....+.|+++|+||+|+.......... ..+....+..
T Consensus 95 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 174 (207)
T 2fv8_A 95 PDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAY 174 (207)
T ss_dssp TTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCC
Confidence 8999999999998653 222123333333322579999999999997543222111 1112222344
Q ss_pred eEEEcccCCCCCHHHHHHHHHhhCC
Q 015293 255 EVIPVSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 255 ~iv~iSA~~g~gi~~L~~~L~~~l~ 279 (409)
+++++||++|.|+++|+++|.+.+.
T Consensus 175 ~~~~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 175 DYLECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 7999999999999999999988764
No 106
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.79 E-value=3.7e-19 Score=157.37 Aligned_cols=152 Identities=18% Similarity=0.184 Sum_probs=101.8
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
++ ++|.+|+|||||+|+|++..+. ....+|+.......+..++ ..+.||||||. ..+..+ ...++.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~~~ 88 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ--EDYAAI-------RDNYFR 88 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC--CSCCTTCCEEEEEEEEETTEEEEEEEEECCCT--TCCHHH-------HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCC--CcCCCccceEEEEEEEECCEEEEEEEEECCCC--cccHHH-------HHHHhc
Confidence 44 9999999999999999987753 4445555444444344443 57899999994 333322 234467
Q ss_pred CcceEEEEeeCCCCCC--hHHHHHHHHhccC-CCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCC
Q 015293 191 NADCIVVLVDACKAPE--RIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGH 265 (409)
Q Consensus 191 ~aDvillVvD~~~~~~--~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~ 265 (409)
.+|++++|+|+++... ....++....... ..+.|+++|+||+|+..... .......... .+ .+++++||++|.
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~ 166 (187)
T 2a9k_A 89 SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ-WN-VNYVETSAKTRA 166 (187)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHH-TT-CEEEECCTTTCT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH-cC-CeEEEeCCCCCC
Confidence 8999999999986532 2222222222211 14799999999999865321 2223333333 23 379999999999
Q ss_pred CHHHHHHHHHhhC
Q 015293 266 GVEDIRDWILTKL 278 (409)
Q Consensus 266 gi~~L~~~L~~~l 278 (409)
|+++++++|.+.+
T Consensus 167 gi~~l~~~l~~~i 179 (187)
T 2a9k_A 167 NVDKVFFDLMREI 179 (187)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 107
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.79 E-value=2.1e-19 Score=158.03 Aligned_cols=155 Identities=18% Similarity=0.122 Sum_probs=98.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC---eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE---YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~---~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++|.+|||||||+|+|++..+.. ...+.++.+.....+..++ ..+.+|||||. ..+..+ ...++..+
T Consensus 11 v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~~~-------~~~~~~~~ 80 (178)
T 2hxs_A 11 VLGDGASGKTSLTTCFAQETFGK-QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ--TIGGKM-------LDKYIYGA 80 (178)
T ss_dssp EECCTTSSHHHHHHHHHGGGTTH-HHHHTTTSSEEEEEEEETTTEEEEEEEEECTTC--CTTCTT-------HHHHHTTC
T ss_pred EECcCCCCHHHHHHHHHhCcCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCC--ccccch-------hhHHHhhC
Confidence 99999999999999999877531 1112222223333334333 78999999994 333333 23347899
Q ss_pred ceEEEEeeCCCCCC--hHHHHHHHHhccC--CCCCC-EEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCC
Q 015293 193 DCIVVLVDACKAPE--RIDEILEEGVGDH--KDKLP-ILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGH 265 (409)
Q Consensus 193 DvillVvD~~~~~~--~~~~~l~~~l~~~--~~~~p-~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~ 265 (409)
|++++|+|++++.. ....++....... ..+.| +++|+||+|+..... ........... + .+++++||++|.
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~~~ 158 (178)
T 2hxs_A 81 QGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQEN-G-FSSHFVSAKTGD 158 (178)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHH-T-CEEEEECTTTCT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHc-C-CcEEEEeCCCCC
Confidence 99999999987542 2222222221100 02456 899999999964221 12222222222 2 378999999999
Q ss_pred CHHHHHHHHHhhCCCCC
Q 015293 266 GVEDIRDWILTKLPLGP 282 (409)
Q Consensus 266 gi~~L~~~L~~~l~~~~ 282 (409)
|+++++++|.+.+...+
T Consensus 159 gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 159 SVFLCFQKVAAEILGIK 175 (178)
T ss_dssp THHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHhhh
Confidence 99999999998876543
No 108
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.79 E-value=3.5e-19 Score=160.90 Aligned_cols=152 Identities=21% Similarity=0.202 Sum_probs=98.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|+|.+..+... ..+.++.... ..+..+ ...+.+|||||. ..+..+ ...++..+|
T Consensus 30 vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~~~~d 98 (201)
T 2gco_A 30 IVGDGACGKTCLLIVFSKDQFPEV-YVPTVFENYI-ADIEVDGKQVELALWDTAGQ--EDYDRL-------RPLSYPDTD 98 (201)
T ss_dssp EEESTTSSHHHHHHHHHHSSCCSS-CCCSSCCCCE-EEEEETTEEEEEEEECCCCS--GGGTTT-------GGGGCTTCS
T ss_pred EECCCCCCHHHHHHHHHhCcCCcc-cCCcccceEE-EEEEECCEEEEEEEEECCCc--hhHHHH-------HHHhcCCCC
Confidence 999999999999999998776421 1222222221 122333 357899999994 333333 224578999
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHH-------------HHHHHHhcCCCceEEE
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTDVDEVIP 258 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~-------------~~~~~~~~~~~~~iv~ 258 (409)
++++|+|++++. ......+...+.....+.|+++|+||+|+........ ....+....+..++++
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (201)
T 2gco_A 99 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE 178 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence 999999998653 2221233333333225799999999999976432211 1111222234447999
Q ss_pred cccCCCCCHHHHHHHHHhhC
Q 015293 259 VSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 259 iSA~~g~gi~~L~~~L~~~l 278 (409)
+||++|.|+++|+++|.+.+
T Consensus 179 ~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 179 CSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998753
No 109
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.79 E-value=3e-19 Score=155.69 Aligned_cols=152 Identities=17% Similarity=0.182 Sum_probs=97.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|+|++..+.. ...+..+.+.....+..+ ...+.+|||||. ..+. .....++..+|
T Consensus 11 v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~-------~~~~~~~~~~d 80 (170)
T 1z08_A 11 LLGEGCVGKTSLVLRYCENKFND-KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ--ERFH-------ALGPIYYRDSN 80 (170)
T ss_dssp EECCTTSCHHHHHHHHHHCCCCS-SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC----------------CCSSTTCS
T ss_pred EECcCCCCHHHHHHHHHcCCCCc-CCCCccceEEEEEEEEECCEEEEEEEEECCCc--Hhhh-------hhHHHHhccCC
Confidence 99999999999999999877542 223333333333334443 357899999994 2222 22344578999
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
++++|+|++++. .....++.........+.|+++|+||+|+..... .......... .+ .+++++||++|.|+++
T Consensus 81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~gi~~ 158 (170)
T 1z08_A 81 GAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAES-VG-AKHYHTSAKQNKGIEE 158 (170)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH-TT-CEEEEEBTTTTBSHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHH-cC-CeEEEecCCCCCCHHH
Confidence 999999998754 1222222222111125689999999999965321 2222222222 23 4789999999999999
Q ss_pred HHHHHHhhCC
Q 015293 270 IRDWILTKLP 279 (409)
Q Consensus 270 L~~~L~~~l~ 279 (409)
++++|.+.+.
T Consensus 159 l~~~l~~~~~ 168 (170)
T 1z08_A 159 LFLDLCKRMI 168 (170)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987653
No 110
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.79 E-value=2.9e-19 Score=176.75 Aligned_cols=165 Identities=22% Similarity=0.203 Sum_probs=107.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
|+|+||||||||+|+|++... .+++.+++|++.....+..++..+.++||||+.......+-..+ ..+...+..||++
T Consensus 184 lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f-~~tl~~~~~aD~i 261 (364)
T 2qtf_A 184 IVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAF-FVTLSEAKYSDAL 261 (364)
T ss_dssp EECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHH-HHHHHGGGGSSEE
T ss_pred EECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHH-HHHHHHHHhCCEE
Confidence 999999999999999999885 57888999998888888888889999999997543222222223 3455668899999
Q ss_pred EEEeeCCCCCC---hHHHHHHHHhccCC-CCCCEEEEEecCCCCChhhHH--HHH-HHHHhc-CCCceEEEcccCCCCCH
Q 015293 196 VVLVDACKAPE---RIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIA--KKL-EWYEKF-TDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 196 llVvD~~~~~~---~~~~~l~~~l~~~~-~~~p~ilvlNK~Dl~~~~~~~--~~~-~~~~~~-~~~~~iv~iSA~~g~gi 267 (409)
++|+|++++.. .....+...+.... .+.|+++|+||+|+.+..... ... ...... ....+++++||++|.|+
T Consensus 262 l~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi 341 (364)
T 2qtf_A 262 ILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNL 341 (364)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSH
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCH
Confidence 99999987641 11111222222211 578999999999997643111 111 111222 22236899999999999
Q ss_pred HHHHHHHHhhCCCCC
Q 015293 268 EDIRDWILTKLPLGP 282 (409)
Q Consensus 268 ~~L~~~L~~~l~~~~ 282 (409)
++|+++|.+.+...+
T Consensus 342 ~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 342 ELLRDKIYQLATQLS 356 (364)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccC
Confidence 999999998775443
No 111
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.79 E-value=1.4e-19 Score=165.63 Aligned_cols=157 Identities=13% Similarity=0.052 Sum_probs=103.5
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEE--eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhh
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 189 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~--~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~ 189 (409)
.++ ++|.+|||||||+++|++..+. .....|+.......+ ......+.+|||||. ..+..+ ...++
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 96 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTACLETEEQRVELSLWDTSGS--PYYDNV-------RPLCY 96 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEC--CEEEEEEEEECCS--GGGTTT-------GGGGC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCC--CCcCCeeeeeEEEEEEECCEEEEEEEEECCCC--HhHHHH-------HHHHc
Confidence 344 9999999999999999988764 333444443333333 334468999999994 333333 23457
Q ss_pred cCcceEEEEeeCCCCCChHH--HHHHHHhccCCCCCCEEEEEecCCCCCh--------------hhHHHHHHHHHhcCCC
Q 015293 190 INADCIVVLVDACKAPERID--EILEEGVGDHKDKLPILLVLNKKDLIKP--------------GEIAKKLEWYEKFTDV 253 (409)
Q Consensus 190 ~~aDvillVvD~~~~~~~~~--~~l~~~l~~~~~~~p~ilvlNK~Dl~~~--------------~~~~~~~~~~~~~~~~ 253 (409)
..+|++|+|+|+++...... ..+...+.....+.|+++|+||+|+... ........+ ....+.
T Consensus 97 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~ 175 (214)
T 3q3j_B 97 SDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAI-AKQLGA 175 (214)
T ss_dssp TTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH-HHHHTC
T ss_pred CCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHH-HHHcCC
Confidence 89999999999987642221 2233333332357999999999998642 111111222 222244
Q ss_pred ceEEEcccCCCCC-HHHHHHHHHhhCCCC
Q 015293 254 DEVIPVSAKYGHG-VEDIRDWILTKLPLG 281 (409)
Q Consensus 254 ~~iv~iSA~~g~g-i~~L~~~L~~~l~~~ 281 (409)
.++++|||++|.| +++++++|.+.+...
T Consensus 176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 176 EIYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred CEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 4799999999998 999999999877543
No 112
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.79 E-value=7.6e-19 Score=171.57 Aligned_cols=154 Identities=19% Similarity=0.207 Sum_probs=107.0
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++ |+|.+|||||||+|+|++..+... .| |.......+...+..+.|||||| +..+..+ ...++..+
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~~~~--~p--T~~~~~~~~~~~~~~l~i~Dt~G--~~~~~~~-------~~~~~~~a 233 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNISFTVWDVGG--QDKIRPL-------WRHYFQNT 233 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCCEEE--EE--ETTEEEEEEEETTEEEEEEECC-------CCS-------HHHHHTTE
T ss_pred eEEEECCCCccHHHHHHHHhCCCCCCc--cc--ccceEEEEEecCcEEEEEEECCC--CHhHHHH-------HHHHhccC
Confidence 44 999999999999999998886432 22 33334445667789999999999 4444443 23347889
Q ss_pred ceEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHHhcC---CCceEEEcccCCCCC
Q 015293 193 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT---DVDEVIPVSAKYGHG 266 (409)
Q Consensus 193 DvillVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~---~~~~iv~iSA~~g~g 266 (409)
|++|+|+|+++.. .....++...+... ..+.|++||+||+|+............+.... ...+++++||++|.|
T Consensus 234 d~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~g 313 (329)
T 3o47_A 234 QGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 313 (329)
T ss_dssp EEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBT
T ss_pred CEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcC
Confidence 9999999998754 33444555554432 14789999999999986544444444332211 234789999999999
Q ss_pred HHHHHHHHHhhCCC
Q 015293 267 VEDIRDWILTKLPL 280 (409)
Q Consensus 267 i~~L~~~L~~~l~~ 280 (409)
|++|+++|.+.+..
T Consensus 314 i~el~~~l~~~l~~ 327 (329)
T 3o47_A 314 LYEGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987653
No 113
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.79 E-value=3e-19 Score=159.75 Aligned_cols=152 Identities=19% Similarity=0.226 Sum_probs=97.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeec-CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~-~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|.+|||||||+|+|++..+..... ..+.+.......+......+.+|||||. ..+..+. ..++..+|+
T Consensus 26 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~-------~~~~~~~d~ 96 (191)
T 2a5j_A 26 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ--ESFRSIT-------RSYYRGAAG 96 (191)
T ss_dssp EESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTG--GGTSCCC-------HHHHTTCSE
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCc--hhhhhhH-------HHHhccCCE
Confidence 99999999999999999887653322 2233333222222223368999999994 3443332 234678999
Q ss_pred EEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 195 IVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 195 illVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
+++|+|++++. .....++.........+.|+++|+||+|+..... ......+.... + .+++++||++|.|++++
T Consensus 97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~~~Sa~~~~gi~~l 174 (191)
T 2a5j_A 97 ALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREH-G-LIFMETSAKTACNVEEA 174 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH-T-CEEEEECTTTCTTHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHc-C-CEEEEEeCCCCCCHHHH
Confidence 99999998753 2222333333222225789999999999964221 12222222222 2 37899999999999999
Q ss_pred HHHHHhhC
Q 015293 271 RDWILTKL 278 (409)
Q Consensus 271 ~~~L~~~l 278 (409)
+++|.+.+
T Consensus 175 ~~~l~~~i 182 (191)
T 2a5j_A 175 FINTAKEI 182 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
No 114
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.79 E-value=3.1e-19 Score=155.07 Aligned_cols=150 Identities=19% Similarity=0.227 Sum_probs=97.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeC--CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~--~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|+|||||+|+|++..+.. ...+..+.+.....+.. ....+.+|||||. ..+..+ ...++..+|
T Consensus 10 v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~~~~~d 79 (168)
T 1z2a_A 10 VVGNGAVGKSSMIQRYCKGIFTK-DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ--EEFDAI-------TKAYYRGAQ 79 (168)
T ss_dssp EECSTTSSHHHHHHHHHHCCCCC-CSSCCCSSSEEEEEEEETTEEEEEEEECCTTG--GGTTCC-------CHHHHTTCC
T ss_pred EECcCCCCHHHHHHHHHcCCCCC-CCCCceEEEEEEEEEEECCEEEEEEEEcCCCc--HhHHHH-------HHHHhcCCC
Confidence 99999999999999999876542 11222222222223332 3468999999994 333333 223467999
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
++++|+|++++. .....++...... ..+.|+++|+||+|+..... ........... + .+++++||++|.|+++
T Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~~~~i~~ 156 (168)
T 1z2a_A 80 ACVLVFSTTDRESFEAISSWREKVVAE-VGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRL-K-LRFYRTSVKEDLNVSE 156 (168)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-HCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHH-T-CEEEECBTTTTBSSHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECcccCcccccCHHHHHHHHHHc-C-CeEEEEecCCCCCHHH
Confidence 999999998753 2222233222221 15789999999999865321 12222222222 3 3799999999999999
Q ss_pred HHHHHHhhC
Q 015293 270 IRDWILTKL 278 (409)
Q Consensus 270 L~~~L~~~l 278 (409)
++++|.+.+
T Consensus 157 l~~~l~~~~ 165 (168)
T 1z2a_A 157 VFKYLAEKH 165 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
No 115
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.79 E-value=1.2e-18 Score=154.95 Aligned_cols=151 Identities=18% Similarity=0.174 Sum_probs=98.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEE-EEEEeCC-----------CeeEEEEeCCCCchhhhhhHhHHHHH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI-LGICSGP-----------EYQMILYDTPGIIEKKIHMLDSMMMK 183 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~-~~~~~~~-----------~~~i~liDtpG~~~~~~~~l~~~~~~ 183 (409)
|+|.+|||||||+|+|++..+.. ...+....+.. ...+..+ ...+.+|||||.. .+. .
T Consensus 16 v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~-------~ 85 (195)
T 3bc1_A 16 ALGDSGVGKTSVLYQYTDGKFNS-KFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE--RFR-------S 85 (195)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG--GGH-------H
T ss_pred EECCCCCCHHHHHHHHhcCCCCc-CcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH--HHH-------H
Confidence 99999999999999999876532 11222222222 2233333 3589999999953 222 2
Q ss_pred HHHHhhcCcceEEEEeeCCCCCCh--HHHHHHHHhccCC-CCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEE
Q 015293 184 NVRSAGINADCIVVLVDACKAPER--IDEILEEGVGDHK-DKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIP 258 (409)
Q Consensus 184 ~~~~~~~~aDvillVvD~~~~~~~--~~~~l~~~l~~~~-~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~ 258 (409)
.+..++..+|++++|+|++++... ...++........ .+.|+++|+||+|+..... ........... + .++++
T Consensus 86 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~ 163 (195)
T 3bc1_A 86 LTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKY-G-IPYFE 163 (195)
T ss_dssp HHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHH-T-CCEEE
T ss_pred HHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHc-C-CCEEE
Confidence 345668899999999999875421 2223322222111 5789999999999964221 12222222222 2 37899
Q ss_pred cccCCCCCHHHHHHHHHhhC
Q 015293 259 VSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 259 iSA~~g~gi~~L~~~L~~~l 278 (409)
+||++|.|+++++++|.+.+
T Consensus 164 ~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 164 TSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999998765
No 116
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=160.30 Aligned_cols=156 Identities=19% Similarity=0.199 Sum_probs=95.6
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcce-eeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLS-IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~-~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
..+ ++|.+|||||||+|+|++..+. ...+..+.+.......+......+.||||||. ..+..+ +..++.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~~ 99 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ--ERFRSI-------AKSYFR 99 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTC--TTCHHH-------HHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCC--cchhhh-------HHHHHh
Confidence 344 9999999999999999987753 22334444433333333444467999999994 333222 334567
Q ss_pred CcceEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChh------h--HHHHHHHHHhcCCCceEEEcc
Q 015293 191 NADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPG------E--IAKKLEWYEKFTDVDEVIPVS 260 (409)
Q Consensus 191 ~aDvillVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~------~--~~~~~~~~~~~~~~~~iv~iS 260 (409)
.+|++++|+|++++.. ....++..+......+.|+++|+||+|+.... . ......+.... + .+++++|
T Consensus 100 ~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~-~-~~~~~~S 177 (199)
T 2p5s_A 100 KADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY-G-ALFCETS 177 (199)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH-T-CEEEECC
T ss_pred hCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHc-C-CeEEEee
Confidence 8999999999987542 22222222211112578999999999985211 1 11111222222 2 3789999
Q ss_pred cCCCCCHHHHHHHHHhhCC
Q 015293 261 AKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 261 A~~g~gi~~L~~~L~~~l~ 279 (409)
|++|.|+++++++|.+.+.
T Consensus 178 A~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 178 AKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp TTTCTTHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988664
No 117
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.79 E-value=4.5e-19 Score=156.24 Aligned_cols=148 Identities=15% Similarity=0.193 Sum_probs=96.3
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhh
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 189 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~ 189 (409)
.++ ++|.+|||||||+|+|++..+....++.+... ...+..+ ...+.+|||||... ..++
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~--------------~~~~ 70 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY---KKEMLVDGQTHLVLIREEAGAPD--------------AKFS 70 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE---EEEEEETTEEEEEEEEECSSSCC--------------HHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE---EEEEEECCEEEEEEEEECCCCch--------------hHHH
Confidence 344 99999999999999999887754333333222 2222333 35789999999532 1235
Q ss_pred cCcceEEEEeeCCCCCC--hHHHH---HHHHhccCCCCCCEEEEEecCCCCC--h--hhHHHHHHHHHhcCCCceEEEcc
Q 015293 190 INADCIVVLVDACKAPE--RIDEI---LEEGVGDHKDKLPILLVLNKKDLIK--P--GEIAKKLEWYEKFTDVDEVIPVS 260 (409)
Q Consensus 190 ~~aDvillVvD~~~~~~--~~~~~---l~~~l~~~~~~~p~ilvlNK~Dl~~--~--~~~~~~~~~~~~~~~~~~iv~iS 260 (409)
+.+|++++|+|++++.. ....+ +.........+.|+++|+||+|+.. . ........+.... +..+++++|
T Consensus 71 ~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~-~~~~~~~~S 149 (178)
T 2iwr_A 71 GWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADM-KRCSYYETX 149 (178)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH-SSEEEEEEB
T ss_pred HhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhh-cCCeEEEEe
Confidence 67999999999987542 22222 2222221125789999999999831 1 1122222222222 234799999
Q ss_pred cCCCCCHHHHHHHHHhhC
Q 015293 261 AKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 261 A~~g~gi~~L~~~L~~~l 278 (409)
|++|.|+++++++|.+.+
T Consensus 150 a~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 150 ATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp TTTTBTHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHH
Confidence 999999999999998755
No 118
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.79 E-value=3.5e-19 Score=161.13 Aligned_cols=152 Identities=18% Similarity=0.137 Sum_probs=100.1
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
|+|.+|||||||+|+|++..+.. ...+..+.+.....+..+ ...+.+|||||. ..+..+ +..++..+|
T Consensus 13 v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~~~~~d 82 (206)
T 2bcg_Y 13 LIGNSGVGKSCLLLRFSDDTYTN-DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ--ERFRTI-------TSSYYRGSH 82 (206)
T ss_dssp EEESTTSSHHHHHHHHHHCCCCT-TCCCSSCCCEEEEEEEETTEEEEEEEECCTTT--TTTTCC-------CGGGGTTCS
T ss_pred EECCCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEeCCCh--HHHHHH-------HHHhccCCC
Confidence 99999999999999999887642 222333333333333333 358999999994 333322 334578999
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
++++|+|++++.. ....++.........+.|+++|+||+|+..... ......+. ...+ .+++++||++|.|+++
T Consensus 83 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~~~-~~~~~~Sa~~g~gi~~ 160 (206)
T 2bcg_Y 83 GIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-DANK-MPFLETSALDSTNVED 160 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHH-HHTT-CCEEECCTTTCTTHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHH-HHcC-CeEEEEeCCCCCCHHH
Confidence 9999999987542 222233222221125789999999999975322 12222222 2223 3799999999999999
Q ss_pred HHHHHHhhCC
Q 015293 270 IRDWILTKLP 279 (409)
Q Consensus 270 L~~~L~~~l~ 279 (409)
++++|.+.+.
T Consensus 161 l~~~l~~~i~ 170 (206)
T 2bcg_Y 161 AFLTMARQIK 170 (206)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987664
No 119
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.79 E-value=1.8e-19 Score=160.88 Aligned_cols=153 Identities=19% Similarity=0.145 Sum_probs=98.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecC-------CCceEEEEEE-----EEeCCCeeEEEEeCCCCchhhhhhHhHHHHH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNK-------PQTTRHRILG-----ICSGPEYQMILYDTPGIIEKKIHMLDSMMMK 183 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~-------~~tt~~~~~~-----~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~ 183 (409)
++|.+|||||||++.+.+.......+. ...|...... .+......+.+|||||. ..+..+
T Consensus 19 vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~------ 90 (198)
T 3t1o_A 19 YYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQ--VFYNAS------ 90 (198)
T ss_dssp EECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSC--CSCSHH------
T ss_pred EECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCCh--HHHHHH------
Confidence 999999999999998887654321111 1122211111 12233467999999994 333333
Q ss_pred HHHHhhcCcceEEEEeeCCCCCChHH----HHHHHH---hccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceE
Q 015293 184 NVRSAGINADCIVVLVDACKAPERID----EILEEG---VGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEV 256 (409)
Q Consensus 184 ~~~~~~~~aDvillVvD~~~~~~~~~----~~l~~~---l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~i 256 (409)
...++..+|++++|+|++++..... ..+..+ ++....+.|+++|+||+|+............... .+..++
T Consensus 91 -~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-~~~~~~ 168 (198)
T 3t1o_A 91 -RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP-EGKFPV 168 (198)
T ss_dssp -HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCT-TCCSCE
T ss_pred -HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHh-cCCceE
Confidence 3345789999999999985431111 111122 2222267999999999999765444444444333 344489
Q ss_pred EEcccCCCCCHHHHHHHHHhhC
Q 015293 257 IPVSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 257 v~iSA~~g~gi~~L~~~L~~~l 278 (409)
+++||++|.|+++++++|.+.+
T Consensus 169 ~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 169 LEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp EECBGGGTBTHHHHHHHHHHHH
T ss_pred EEEecCCCcCHHHHHHHHHHHH
Confidence 9999999999999999998755
No 120
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=1.1e-18 Score=156.33 Aligned_cols=156 Identities=17% Similarity=0.216 Sum_probs=98.2
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhh
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 189 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~--~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~ 189 (409)
..+ ++|.+|||||||+|+|++..+.. ....+........ .......+.+|||||. ..+..+ ...++
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~~ 77 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGTFRD--TYIPTIEDTYRQVISCDKSVCTLQITDTTGS--HQFPAM-------QRLSI 77 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCC--TTSCCCCEEEEEEEEETTEEEEEEEEECCGG--GSCHHH-------HHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCC--cccCccccceeEEEEECCEEEEEEEEeCCCh--HHhHHH-------HHHhh
Confidence 344 99999999999999999876542 1111211111122 2333457899999994 333322 23346
Q ss_pred cCcceEEEEeeCCCCC--ChHHHHHHHH--hccCCCCCCEEEEEecCCCCChhh-HHHHHHHHHhcCCCceEEEcccCCC
Q 015293 190 INADCIVVLVDACKAP--ERIDEILEEG--VGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYG 264 (409)
Q Consensus 190 ~~aDvillVvD~~~~~--~~~~~~l~~~--l~~~~~~~p~ilvlNK~Dl~~~~~-~~~~~~~~~~~~~~~~iv~iSA~~g 264 (409)
..+|++++|+|++++. .....++..+ ......+.|+++|+||+|+..... ........... + .+++++||++|
T Consensus 78 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~~ 155 (199)
T 2gf0_A 78 SKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEW-K-CAFMETSAKMN 155 (199)
T ss_dssp HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHH-T-CEEEECBTTTT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHh-C-CeEEEEecCCC
Confidence 7899999999998643 1112222111 111114689999999999975321 12222222222 2 37899999999
Q ss_pred CCHHHHHHHHHhhCCCC
Q 015293 265 HGVEDIRDWILTKLPLG 281 (409)
Q Consensus 265 ~gi~~L~~~L~~~l~~~ 281 (409)
.|+++|+++|.+.+...
T Consensus 156 ~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 156 YNVKELFQELLTLETRR 172 (199)
T ss_dssp BSHHHHHHHHHHHCSSS
T ss_pred CCHHHHHHHHHHHHhhh
Confidence 99999999999988643
No 121
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=156.57 Aligned_cols=151 Identities=17% Similarity=0.194 Sum_probs=102.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
|+|.+|||||||+|+|++..+. ...++|+.+.....+..++ ..+.||||||. ..+..+ ...++..+|
T Consensus 19 v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~~~~~~ 87 (206)
T 2bov_A 19 MVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ--EDYAAI-------RDNYFRSGE 87 (206)
T ss_dssp EECSTTSSHHHHHHHHHHSCCC--TTCCTTCCEEEEEEEEETTEEEEEEEEECCCT--TCCHHH-------HHHHHHHCS
T ss_pred EECCCCCCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEcCCCh--hhhHHH-------HHHHHhhCC
Confidence 9999999999999999988753 4455555554444444444 57899999994 333322 234467899
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccC-CCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
++++|+|+++... ....++....... ..+.|+++|+||+|+..... ......+.... + .+++++||++|.|++
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~g~gi~ 165 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQW-N-VNYVETSAKTRANVD 165 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHH-T-CEEEEECTTTCTTHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHh-C-CeEEEEeCCCCCCHH
Confidence 9999999987531 2223332222211 14799999999999965322 22223333322 2 379999999999999
Q ss_pred HHHHHHHhhCC
Q 015293 269 DIRDWILTKLP 279 (409)
Q Consensus 269 ~L~~~L~~~l~ 279 (409)
+|+++|.+.+.
T Consensus 166 ~l~~~l~~~i~ 176 (206)
T 2bov_A 166 KVFFDLMREIR 176 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987663
No 122
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.79 E-value=3.7e-19 Score=156.68 Aligned_cols=152 Identities=21% Similarity=0.211 Sum_probs=93.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC---CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP---EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~---~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
++|.+|+|||||+|+|++..+.. ...+..+.+.....+..+ ...+.+|||||. ..+. .....++..+
T Consensus 13 v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~-------~~~~~~~~~~ 82 (182)
T 1ky3_A 13 ILGDSGVGKTSLMHRYVNDKYSQ-QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ--ERFQ-------SLGVAFYRGA 82 (182)
T ss_dssp EECCTTSSHHHHHHHHHHSCCCT-TC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------CCSTTC
T ss_pred EECCCCCCHHHHHHHHHhCcCCc-ccCCccceEEEEEEEEEcCCcEEEEEEEECCCC--hHhh-------hhhHHHhhcC
Confidence 99999999999999999877542 112222222333333333 468999999994 3322 2244567899
Q ss_pred ceEEEEeeCCCCCC--hHHHHHHHHhccC----CCCCCEEEEEecCCCCChh---hHHHHHHHHHhcCCCceEEEcccCC
Q 015293 193 DCIVVLVDACKAPE--RIDEILEEGVGDH----KDKLPILLVLNKKDLIKPG---EIAKKLEWYEKFTDVDEVIPVSAKY 263 (409)
Q Consensus 193 DvillVvD~~~~~~--~~~~~l~~~l~~~----~~~~p~ilvlNK~Dl~~~~---~~~~~~~~~~~~~~~~~iv~iSA~~ 263 (409)
|++++|+|++++.. ....++....... ..+.|+++|+||+|+.... ....... +.......+++++||++
T Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~-~~~~~~~~~~~~~Sa~~ 161 (182)
T 1ky3_A 83 DCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQE-LAKSLGDIPLFLTSAKN 161 (182)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHH-HHHHTTSCCEEEEBTTT
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHH-HHHhcCCCeEEEEecCC
Confidence 99999999987541 2222322222111 1578999999999996432 1222222 22212345799999999
Q ss_pred CCCHHHHHHHHHhhC
Q 015293 264 GHGVEDIRDWILTKL 278 (409)
Q Consensus 264 g~gi~~L~~~L~~~l 278 (409)
|.|+++++++|.+.+
T Consensus 162 ~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 162 AINVDTAFEEIARSA 176 (182)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998754
No 123
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.78 E-value=1.9e-19 Score=162.52 Aligned_cols=151 Identities=23% Similarity=0.293 Sum_probs=100.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~--~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
|+|.+|||||||+|+|++..+. .....|+......... .....+.||||||.. .+..+ ...++..+|
T Consensus 29 vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~~~~~~~d 97 (201)
T 3oes_A 29 ILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQD--EYSIL-------PYSFIIGVH 97 (201)
T ss_dssp EEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCC--TTCCC-------CGGGTTTCC
T ss_pred EECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCcc--chHHH-------HHHHHhcCC
Confidence 9999999999999999988865 3344444444343333 345778999999953 33322 334578999
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~--~~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
++++|+|+++.. .....++..+.... ..+.|+++|+||+|+.....+ ......... .+ .+++++||++|.|++
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~~Sa~~~~~v~ 175 (201)
T 3oes_A 98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAES-WG-ATFMESSARENQLTQ 175 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHH-HT-CEEEECCTTCHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHH-hC-CeEEEEeCCCCCCHH
Confidence 999999998653 22223333332221 147899999999998643221 111222222 23 379999999999999
Q ss_pred HHHHHHHhhCC
Q 015293 269 DIRDWILTKLP 279 (409)
Q Consensus 269 ~L~~~L~~~l~ 279 (409)
+++++|.+.+.
T Consensus 176 ~l~~~l~~~i~ 186 (201)
T 3oes_A 176 GIFTKVIQEIA 186 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 124
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.78 E-value=9.7e-19 Score=156.05 Aligned_cols=154 Identities=21% Similarity=0.236 Sum_probs=96.0
Q ss_pred EEecCCCChHHHHHHHhCCcceee-ecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhh-hHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH-MLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v-~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~-~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|+|++..+... .+..+.+.......+......+.+|||||. ..+. .+ ...+++.+|
T Consensus 25 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~~-------~~~~~~~~d 95 (189)
T 1z06_A 25 VIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ--ERFRKSM-------VQHYYRNVH 95 (189)
T ss_dssp EECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCS--HHHHTTT-------HHHHHTTCC
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc--hhhhhhh-------hHHHhcCCC
Confidence 999999999999999998776432 222222222222222223368999999994 2322 22 334578999
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCceEEEcccCCC---CC
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG---HG 266 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~-~~~~~~~~~~~~~~~iv~iSA~~g---~g 266 (409)
++++|+|++++.. ....++....... ..+.|+++|+||+|+.....+ ......+....+ .+++++||++| .|
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~~~~ 174 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHS-MPLFETSAKNPNDNDH 174 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CCEEECCSSSGGGGSC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcC-CEEEEEeCCcCCcccC
Confidence 9999999986431 2223333222211 267999999999999643221 111222222223 37899999999 99
Q ss_pred HHHHHHHHHhhCC
Q 015293 267 VEDIRDWILTKLP 279 (409)
Q Consensus 267 i~~L~~~L~~~l~ 279 (409)
+++++++|.+.++
T Consensus 175 i~~l~~~l~~~i~ 187 (189)
T 1z06_A 175 VEAIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987664
No 125
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.78 E-value=1.2e-18 Score=155.28 Aligned_cols=151 Identities=21% Similarity=0.209 Sum_probs=96.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|+|++..+. ....+++.+.....+..++ ..+.+|||||. ..+.. ....++..+|
T Consensus 26 vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~-------~~~~~~~~~d 94 (190)
T 3con_A 26 VVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ--EEYSA-------MRDQYMRTGE 94 (190)
T ss_dssp EECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC--------------------CTTCS
T ss_pred EECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEECCEEEEEEEEECCCh--HHHHH-------HHHHhhCcCC
Confidence 9999999999999999987653 3444555544444444443 56899999994 22222 2345578999
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccC-CCCCCEEEEEecCCCCChh-hHHHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDH-KDKLPILLVLNKKDLIKPG-EIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~-~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
++++|+|+++... ....++....... ..+.|+++|+||+|+.... ............ +. +++++||++|.|+++
T Consensus 95 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~Sa~~~~gi~~ 172 (190)
T 3con_A 95 GFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSY-GI-PFIETSAKTRQGVED 172 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHH-TC-CEEECCTTTCTTHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHc-CC-eEEEEeCCCCCCHHH
Confidence 9999999987542 1222222211110 1478999999999987521 112222222222 32 799999999999999
Q ss_pred HHHHHHhhCC
Q 015293 270 IRDWILTKLP 279 (409)
Q Consensus 270 L~~~L~~~l~ 279 (409)
++++|.+.+.
T Consensus 173 l~~~l~~~~~ 182 (190)
T 3con_A 173 AFYTLVREIR 182 (190)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 126
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.78 E-value=7.2e-19 Score=160.35 Aligned_cols=150 Identities=18% Similarity=0.178 Sum_probs=96.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEE--EeCC----------CeeEEEEeCCCCchhhhhhHhHHHHH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGP----------EYQMILYDTPGIIEKKIHMLDSMMMK 183 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~--~~~~----------~~~i~liDtpG~~~~~~~~l~~~~~~ 183 (409)
|+|.+|||||||+|+|++..+.. ...+..+.+..... +... ...+.|||||| +..+. .
T Consensus 30 vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G--~~~~~-------~ 99 (217)
T 2f7s_A 30 ALGDSGVGKTTFLYRYTDNKFNP-KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAG--QERFR-------S 99 (217)
T ss_dssp EESCTTSSHHHHHHHHHCSCCCC-EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEES--HHHHH-------H
T ss_pred EECcCCCCHHHHHHHHhcCCCCc-CCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCC--cHhHH-------h
Confidence 99999999999999999877531 11111122222222 2222 46899999999 33322 2
Q ss_pred HHHHhhcCcceEEEEeeCCCCCCh--HHHHHHHHhccCC--CCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEE
Q 015293 184 NVRSAGINADCIVVLVDACKAPER--IDEILEEGVGDHK--DKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVI 257 (409)
Q Consensus 184 ~~~~~~~~aDvillVvD~~~~~~~--~~~~l~~~l~~~~--~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv 257 (409)
.+..++..+|++|+|+|++++... ...++ ..+.... .+.|+++|+||+|+..... ......+. ...+ .+++
T Consensus 100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l-~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-~~~~-~~~~ 176 (217)
T 2f7s_A 100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWM-SQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA-DKYG-IPYF 176 (217)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHHHHHHH-HTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH-HHTT-CCEE
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHH-HHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHH-HHCC-CcEE
Confidence 344567899999999999875321 22222 2222211 5789999999999965322 12222222 2223 3799
Q ss_pred EcccCCCCCHHHHHHHHHhhC
Q 015293 258 PVSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 258 ~iSA~~g~gi~~L~~~L~~~l 278 (409)
++||++|.|+++|+++|.+.+
T Consensus 177 ~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 177 ETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp EEBTTTTBTHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 999999999999999998765
No 127
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.78 E-value=3e-19 Score=161.01 Aligned_cols=153 Identities=19% Similarity=0.202 Sum_probs=70.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceE-EEEEEEEeCC----CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRILGICSGP----EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~-~~~~~~~~~~----~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
++|.+|||||||+|+|++.+.........|+. +.....+..+ ...+.+|||||.. .+ ......++.
T Consensus 25 v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~-------~~~~~~~~~ 95 (208)
T 2yc2_C 25 VVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD--LY-------KEQISQYWN 95 (208)
T ss_dssp EC----------------------------------CEEEECTTSSEEEEEEEEETTTTH--HH-------HHHHSTTCC
T ss_pred EECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH--HH-------HHHHHHHHh
Confidence 99999999999999999884333344555543 4444445554 4689999999952 22 233556688
Q ss_pred CcceEEEEeeCCCCCC--hHHHHHHHHhccCC---CCCCEEEEEecCCCCC-hhh--HHHHHHHHHhcCCCceEEEcccC
Q 015293 191 NADCIVVLVDACKAPE--RIDEILEEGVGDHK---DKLPILLVLNKKDLIK-PGE--IAKKLEWYEKFTDVDEVIPVSAK 262 (409)
Q Consensus 191 ~aDvillVvD~~~~~~--~~~~~l~~~l~~~~---~~~p~ilvlNK~Dl~~-~~~--~~~~~~~~~~~~~~~~iv~iSA~ 262 (409)
.+|++++|+|++++.. ....++........ .+.|+++|+||+|+.. ... ......+.... + .+++++||+
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~-~-~~~~~~Sa~ 173 (208)
T 2yc2_C 96 GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTN-T-LDFFDVSAN 173 (208)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHT-T-CEEEECCC-
T ss_pred hCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHc-C-CEEEEeccC
Confidence 9999999999987642 22233333322211 4789999999999976 222 12222333332 3 489999999
Q ss_pred C-CCCHHHHHHHHHhhCC
Q 015293 263 Y-GHGVEDIRDWILTKLP 279 (409)
Q Consensus 263 ~-g~gi~~L~~~L~~~l~ 279 (409)
+ |.|+++++++|.+.+.
T Consensus 174 ~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 174 PPGKDADAPFLSIATTFY 191 (208)
T ss_dssp ------CHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 9 9999999999987653
No 128
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.78 E-value=2.6e-18 Score=152.60 Aligned_cols=155 Identities=28% Similarity=0.373 Sum_probs=97.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh------hhhHhHHHHHHHHHhh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK------IHMLDSMMMKNVRSAG 189 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~------~~~l~~~~~~~~~~~~ 189 (409)
++|.+|||||||+|+|++..+. ++..+++|.+....... .+.+|||||+.... ................
T Consensus 6 v~G~~~~GKSsli~~l~~~~~~-~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (190)
T 2cxx_A 6 FAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNA 80 (190)
T ss_dssp EEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHG
T ss_pred EECCCCCCHHHHHHHHhCcCCc-cCCCCCccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999998754 56667777654443332 78999999963210 1111111111122225
Q ss_pred cCcceEEEEeeCCCCCChHH-----------HHHHHHhccCCCCCCEEEEEecCCCCChh--hHHHHHHHHHhcCCC---
Q 015293 190 INADCIVVLVDACKAPERID-----------EILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDV--- 253 (409)
Q Consensus 190 ~~aDvillVvD~~~~~~~~~-----------~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~--~~~~~~~~~~~~~~~--- 253 (409)
..++++++|+|......... ..+...+.. .+.|+++|+||+|+.... ....+...+.. .+
T Consensus 81 ~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~ 156 (190)
T 2cxx_A 81 KNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNVQEVINFLAEKFEV--PLSEI 156 (190)
T ss_dssp GGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCHHHHHHHHHHHHTC--CGGGH
T ss_pred ccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh--cCCceEEEeehHhccCcHHHHHHHHHHHhhh--hhhcc
Confidence 56788888888754211111 112222333 579999999999998654 12222222211 11
Q ss_pred -ceEEEcccCCCCCHHHHHHHHHhhCC
Q 015293 254 -DEVIPVSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 254 -~~iv~iSA~~g~gi~~L~~~L~~~l~ 279 (409)
.+++++||++|.|+++++++|.+.+.
T Consensus 157 ~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 157 DKVFIPISAKFGDNIERLKNRIFEVIR 183 (190)
T ss_dssp HHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHhcc
Confidence 25899999999999999999988664
No 129
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=1.4e-18 Score=156.12 Aligned_cols=152 Identities=16% Similarity=0.130 Sum_probs=98.2
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEE--EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhh
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 189 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~--~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~ 189 (409)
.++ ++|.+|||||||+|+|++..+... ...|+...... .+......+.+|||||... ..+ ...++
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---~~~-------~~~~~ 96 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKRFIWE--YDPTLESTYRHQATIDDEVVSMEILDTAGQED---TIQ-------REGHM 96 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSC--CCTTCCEEEEEEEEETTEEEEEEEEECCCCCC---CHH-------HHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc--cCCCCCceEEEEEEECCEEEEEEEEECCCCCc---ccc-------hhhhh
Confidence 345 999999999999999998876432 22332222222 2333346799999999643 222 23346
Q ss_pred cCcceEEEEeeCCCCCC--hHHHHHHHHhcc-CCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCC
Q 015293 190 INADCIVVLVDACKAPE--RIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYG 264 (409)
Q Consensus 190 ~~aDvillVvD~~~~~~--~~~~~l~~~l~~-~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g 264 (409)
..+|++++|+|++++.. ....++...... ...+.|+++|+||+|+..... ........... + .+++++||++|
T Consensus 97 ~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~~~Sa~~g 174 (196)
T 2atv_A 97 RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATEL-A-CAFYECSACTG 174 (196)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-T-SEEEECCTTTC
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHh-C-CeEEEECCCcC
Confidence 78999999999987431 222222222211 115789999999999865321 12222222222 2 37999999999
Q ss_pred C-CHHHHHHHHHhhC
Q 015293 265 H-GVEDIRDWILTKL 278 (409)
Q Consensus 265 ~-gi~~L~~~L~~~l 278 (409)
. |+++++++|.+.+
T Consensus 175 ~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 175 EGNITEIFYELCREV 189 (196)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 9 9999999998765
No 130
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.78 E-value=8.9e-19 Score=179.51 Aligned_cols=153 Identities=25% Similarity=0.340 Sum_probs=107.8
Q ss_pred EEecCCCChHHHHHHHhCCcc------eeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhh
Q 015293 116 VLGKPNVGKSTLANQMIGQKL------SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 189 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~------~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~ 189 (409)
++|++|+|||||+|+|++... ...+..+++|.+.....+..++..+.||||||+ .. +...+...+
T Consensus 24 iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh--~~-------~~~~~~~~~ 94 (482)
T 1wb1_A 24 IFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH--AD-------LIRAVVSAA 94 (482)
T ss_dssp EEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH--HH-------HHHHHHHHT
T ss_pred EECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh--HH-------HHHHHHHHH
Confidence 999999999999999998762 123445667776655556667889999999994 22 345566678
Q ss_pred cCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHH----HHHHhc--CCCceEEEcccCC
Q 015293 190 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL----EWYEKF--TDVDEVIPVSAKY 263 (409)
Q Consensus 190 ~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~----~~~~~~--~~~~~iv~iSA~~ 263 (409)
..+|++|+|+|++++...++...+..+.. .+.|+++|+||+|+.+........ ..+... ....+++++||++
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~ 172 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEHMLILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT 172 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHHHHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred hhCCEEEEEEecCCCccHHHHHHHHHHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcC
Confidence 99999999999998887776666666555 578999999999998754333222 222221 1135799999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 015293 264 GHGVEDIRDWILTKLP 279 (409)
Q Consensus 264 g~gi~~L~~~L~~~l~ 279 (409)
|.|+++|+++|.+.++
T Consensus 173 g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 173 GFGVDELKNLIITTLN 188 (482)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhc
Confidence 9999999999998653
No 131
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.78 E-value=2.6e-20 Score=189.86 Aligned_cols=224 Identities=18% Similarity=0.206 Sum_probs=137.7
Q ss_pred EEecCCCChHHHHHHHhCCc--c----------------------eeeec------CCCceEEEEEEEEeCCCeeEEEEe
Q 015293 116 VLGKPNVGKSTLANQMIGQK--L----------------------SIVTN------KPQTTRHRILGICSGPEYQMILYD 165 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~--~----------------------~~v~~------~~~tt~~~~~~~~~~~~~~i~liD 165 (409)
++|++|+|||||+|+|++.. + +.+.+ ..+.|.+.....+...+..+.|||
T Consensus 12 iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~~iiD 91 (458)
T 1f60_A 12 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVID 91 (458)
T ss_dssp EEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCceEEEEE
Confidence 99999999999999998641 0 11111 245666555556677788999999
Q ss_pred CCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCCh-------HHHHHHHHhccCCCCCC-EEEEEecCCCCC-
Q 015293 166 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER-------IDEILEEGVGDHKDKLP-ILLVLNKKDLIK- 236 (409)
Q Consensus 166 tpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~-------~~~~l~~~l~~~~~~~p-~ilvlNK~Dl~~- 236 (409)
|||+. . +...+..++..+|++|+|+|++++..+ +....+..+.. .+.| +|+|+||+|+..
T Consensus 92 tPGh~--~-------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 92 APGHR--D-------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp CCCCT--T-------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGGTT
T ss_pred CCCcH--H-------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEccccccC
Confidence 99953 2 344566778999999999999875422 34444444443 4565 899999999973
Q ss_pred -hhhHHHH----HHHHHhcCC---CceEEEcccCCCCCHHH------------------------HHHHHHhhCCCCCCC
Q 015293 237 -PGEIAKK----LEWYEKFTD---VDEVIPVSAKYGHGVED------------------------IRDWILTKLPLGPAY 284 (409)
Q Consensus 237 -~~~~~~~----~~~~~~~~~---~~~iv~iSA~~g~gi~~------------------------L~~~L~~~l~~~~~~ 284 (409)
....... ...+....- ..+++++||++|.|+.+ |+++|...
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~~------- 233 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAI------- 233 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHTS-------
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhcc-------
Confidence 2222222 222222211 25899999999999863 55554432
Q ss_pred CCCccccCchHHHHHHHHHH------------HHHHhhcCCC---CCceeEEEEEEEEecC--------CCeeEEEEEEE
Q 015293 285 YPKDIVSEHPERFFVGEIIR------------EKIFMQYRNE---VPYACQVNVVSYKTRP--------TAKDFIQVEIV 341 (409)
Q Consensus 285 ~~~~~~t~~~~r~~i~EiiR------------e~i~~~~~~e---ipys~~v~v~~~~~~~--------~~~~~i~~~i~ 341 (409)
+++...++.|.++.+.+++| ++-.....++ +|+...+.|..++... +....|....+
T Consensus 234 ~~p~~~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi 313 (458)
T 1f60_A 234 EQPSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNV 313 (458)
T ss_dssp CCCCCCTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEETTEECSCBCTTCEEEEEESSC
T ss_pred CCCcccCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEECCeEEEEEcCCCEEEEEEcCC
Confidence 22233344555555554444 2222334555 6888888887776532 11122211111
Q ss_pred EeeCCcceEEeecCCc
Q 015293 342 VEKNSQKIILIGKGGK 357 (409)
Q Consensus 342 v~~~~~~~iliG~~G~ 357 (409)
-+++.++..++|..|.
T Consensus 314 ~~~~i~rG~vl~~~~~ 329 (458)
T 1f60_A 314 SVKEIRRGNVCGDAKN 329 (458)
T ss_dssp CTTTSCTTCEEEETTS
T ss_pred cccccCceeEEecCCC
Confidence 2567899999999874
No 132
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.77 E-value=8.9e-19 Score=157.88 Aligned_cols=152 Identities=20% Similarity=0.234 Sum_probs=99.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhh-HhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHM-LDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~-l~~~~~~~~~~~~~~a 192 (409)
++|.+|||||||+|+|.+..... ...+.++.+.....+..+ ...+.+|||||.. .+.. +. ..++..+
T Consensus 28 vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~--~~~~~~~-------~~~~~~~ 97 (195)
T 3cbq_A 28 LVGESGVGKSTLAGTFGGLQGDS-AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG--DAGGWLR-------DHCLQTG 97 (195)
T ss_dssp EECSTTSSHHHHHHHTCCEECCG-GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCS--GGGHHHH-------HHHHHHC
T ss_pred EECCCCCCHHHHHHHHHhccCCc-cCCCCcccceEEEEEEECCEEEEEEEEecCCCc--cchhhhH-------HHhhccC
Confidence 99999999999999998765432 334444444433333333 3578899999953 2221 21 2336689
Q ss_pred ceEEEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCH
Q 015293 193 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 193 DvillVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi 267 (409)
|++++|+|+++.. .....++....... ..+.|+++|+||+|+..... ......+. ...+ .+++++||++|.|+
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a-~~~~-~~~~e~Sa~~~~~v 175 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-GTLS-CKHIETSAALHHNT 175 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHH-HHTT-CEEEEEBTTTTBSH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHH-HHhC-CEEEEEcCCCCCCH
Confidence 9999999998653 23334443332221 14799999999999975322 22222222 2223 37899999999999
Q ss_pred HHHHHHHHhhCC
Q 015293 268 EDIRDWILTKLP 279 (409)
Q Consensus 268 ~~L~~~L~~~l~ 279 (409)
++++++|.+.+.
T Consensus 176 ~~lf~~l~~~i~ 187 (195)
T 3cbq_A 176 RELFEGAVRQIR 187 (195)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 133
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.77 E-value=4.7e-19 Score=162.75 Aligned_cols=153 Identities=15% Similarity=0.172 Sum_probs=96.1
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
|+|.+|||||||+|+|++..+..... +..+.+.....+..++ ..+.||||||. ..+..+ ...++..+|
T Consensus 18 v~G~~~vGKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~~~~d 87 (223)
T 3cpj_B 18 LIGDSGVGKSNLLSRFTKNEFNMDSK-STIGVEFATRTLEIEGKRIKAQIWDTAGQ--ERYRAI-------TSAYYRGAV 87 (223)
T ss_dssp EESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTT--TTTTCC-------CGGGTTTCC
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCCC-CcccceeEEEEEEECCEEEEEEEEECCCc--cchhhh-------HHHHhccCC
Confidence 99999999999999999887653322 2222222222333344 68999999994 333333 234578999
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
++|+|+|++++.. ....++..+......+.|++||+||+|+..... ......+... .+ .+++++||++|.|+++
T Consensus 88 ~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~~Sa~~~~gi~~ 165 (223)
T 3cpj_B 88 GALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQE-NQ-LLFTETSALNSENVDK 165 (223)
T ss_dssp EEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHH-TT-CEEEECCCC-CCCHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHH-cC-CEEEEEeCCCCCCHHH
Confidence 9999999987542 222233222221125789999999999864321 1222222222 23 4789999999999999
Q ss_pred HHHHHHhhCCC
Q 015293 270 IRDWILTKLPL 280 (409)
Q Consensus 270 L~~~L~~~l~~ 280 (409)
++++|.+.+..
T Consensus 166 l~~~l~~~i~~ 176 (223)
T 3cpj_B 166 AFEELINTIYQ 176 (223)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 99999987754
No 134
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.77 E-value=1.9e-18 Score=177.73 Aligned_cols=154 Identities=19% Similarity=0.170 Sum_probs=109.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
|+|.||||||||+|+|++..+....+ |.......+..++..+.||||||. ..+..+ +..++..+|++
T Consensus 327 lvG~~nvGKSsLl~~l~~~~~~~~~~----T~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~~~~ad~~ 393 (497)
T 3lvq_E 327 MLGLDAAGKTTILYKLKLGQSVTTIP----TVGFNVETVTYKNVKFNVWDVGGQ--DKIRPL-------WRHYYTGTQGL 393 (497)
T ss_dssp EECSTTSSHHHHHHHHHHSSCCCCCC----CSSEEEEEEESSSCEEEEEEECCC--GGGSGG-------GGGGGTTCCEE
T ss_pred EEcCCCCCHHHHHHHHhcCCCCCcCC----ccceeEEEEEeCCEEEEEEECCCc--HHHHHH-------HHHHhccCCEE
Confidence 99999999999999999888543222 444445567778899999999994 343333 34568899999
Q ss_pred EEEeeCCCCC--ChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhhHHHHHHHHHhc---CCCceEEEcccCCCCCHHH
Q 015293 196 VVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 196 llVvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~---~~~~~iv~iSA~~g~gi~~ 269 (409)
|+|+|++++. .....++...+... ..++|+|||+||+|+............+... ....+++++||++|.||++
T Consensus 394 i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 473 (497)
T 3lvq_E 394 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 473 (497)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHH
Confidence 9999998764 33344555544431 1579999999999997654333333332211 1234699999999999999
Q ss_pred HHHHHHhhCCCCC
Q 015293 270 IRDWILTKLPLGP 282 (409)
Q Consensus 270 L~~~L~~~l~~~~ 282 (409)
|+++|.+.+....
T Consensus 474 l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 474 GLTWLTSNYKSKL 486 (497)
T ss_dssp HHHHHHHHCC---
T ss_pred HHHHHHHHHHhcC
Confidence 9999999887543
No 135
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.77 E-value=3.2e-18 Score=153.90 Aligned_cols=159 Identities=12% Similarity=0.036 Sum_probs=99.0
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEE-eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~-~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
.++ ++|.+|||||||++++.+......+.....+.......+ ......+.+|||||. +.+..+.. ....++.
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~~----~~~~~~~ 94 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ--MDFFDPTF----DYEMIFR 94 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSS--CCTTCTTC----CHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCC--HHHHhhhh----hcccccc
Confidence 344 999999999999999988644322222222222222222 245678999999994 33333210 0023467
Q ss_pred CcceEEEEeeCCCCCChHHHHHHHHhcc---CCCCCCEEEEEecCCCCChhhH----HH----HHHHHHhc---CCCceE
Q 015293 191 NADCIVVLVDACKAPERIDEILEEGVGD---HKDKLPILLVLNKKDLIKPGEI----AK----KLEWYEKF---TDVDEV 256 (409)
Q Consensus 191 ~aDvillVvD~~~~~~~~~~~l~~~l~~---~~~~~p~ilvlNK~Dl~~~~~~----~~----~~~~~~~~---~~~~~i 256 (409)
.+|++|+|+|+++........+...+.. ...+.|+++|+||+|+...... .. ....+... ....++
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 174 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSF 174 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEE
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcce
Confidence 8999999999998643332333222222 1268999999999999764321 11 11222221 123478
Q ss_pred EEcccCCCCCHHHHHHHHHhhC
Q 015293 257 IPVSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 257 v~iSA~~g~gi~~L~~~L~~~l 278 (409)
+++||++ .|++++++.|.+.+
T Consensus 175 ~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 175 YLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEECTTS-THHHHHHHHHHHHT
T ss_pred EEEEech-hhHHHHHHHHHHHh
Confidence 9999999 99999999998754
No 136
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.77 E-value=4.4e-19 Score=157.71 Aligned_cols=151 Identities=17% Similarity=0.140 Sum_probs=97.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~--~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|+|++..+. .....|........+. .....+.+|||||. ..+..+ ...++..+|
T Consensus 12 v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~~~~~ 80 (184)
T 1m7b_A 12 VVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGS--PYYDNV-------RPLSYPDSD 80 (184)
T ss_dssp EEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCS--GGGTTT-------GGGGCTTCS
T ss_pred EECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCC--hhhhhh-------HHhhcCCCc
Confidence 9999999999999999987763 2223333322222233 33467899999994 333333 233578999
Q ss_pred eEEEEeeCCCCCChHH--HHHHHHhccCCCCCCEEEEEecCCCCChh--------------hHHHHHHHHHhcCCCceEE
Q 015293 194 CIVVLVDACKAPERID--EILEEGVGDHKDKLPILLVLNKKDLIKPG--------------EIAKKLEWYEKFTDVDEVI 257 (409)
Q Consensus 194 villVvD~~~~~~~~~--~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~--------------~~~~~~~~~~~~~~~~~iv 257 (409)
++++|+|++++..... ..+...+.....+.|+++|+||+|+.... .......+... .+..+++
T Consensus 81 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~ 159 (184)
T 1m7b_A 81 AVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ-IGAATYI 159 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH-HTCSEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHH-cCCcEEE
Confidence 9999999987542211 22223333222579999999999996421 11111222222 2335899
Q ss_pred EcccC-CCCCHHHHHHHHHhhC
Q 015293 258 PVSAK-YGHGVEDIRDWILTKL 278 (409)
Q Consensus 258 ~iSA~-~g~gi~~L~~~L~~~l 278 (409)
++||+ +|.|++++++.|.+.+
T Consensus 160 e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 160 ECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp ECBTTTBHHHHHHHHHHHHHHH
T ss_pred EeeecCCCcCHHHHHHHHHHHH
Confidence 99999 6899999999988654
No 137
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.77 E-value=2.6e-18 Score=172.32 Aligned_cols=159 Identities=19% Similarity=0.191 Sum_probs=104.7
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEE------EE--------Ee-----CCCeeEEEEeCCCCchh
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL------GI--------CS-----GPEYQMILYDTPGIIEK 172 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~------~~--------~~-----~~~~~i~liDtpG~~~~ 172 (409)
..+ ++|++|+|||||+|+|++...........++..... .. .. .....+.||||||+.
T Consensus 9 ~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~-- 86 (403)
T 3sjy_A 9 VNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE-- 86 (403)
T ss_dssp CEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG--
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH--
Confidence 345 999999999999999998543221111111110000 00 00 011679999999953
Q ss_pred hhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCC-ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhc-
Q 015293 173 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF- 250 (409)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~-~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~- 250 (409)
. +...+...+..+|++++|+|++++. ..+...++..+... ..+|+++|+||+|+.+........+.+...
T Consensus 87 ~-------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l 158 (403)
T 3sjy_A 87 V-------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQFT 158 (403)
T ss_dssp G-------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred H-------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccchHHHHHHHHHHHHHH
Confidence 2 2344556678999999999999876 55555555544432 336999999999998765444333332221
Q ss_pred ----CCCceEEEcccCCCCCHHHHHHHHHhhCCCC
Q 015293 251 ----TDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 281 (409)
Q Consensus 251 ----~~~~~iv~iSA~~g~gi~~L~~~L~~~l~~~ 281 (409)
....+++++||++|.|+++|+++|.+.++..
T Consensus 159 ~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 159 KGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp TTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 1235799999999999999999999987643
No 138
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.77 E-value=2.3e-18 Score=153.65 Aligned_cols=145 Identities=14% Similarity=0.136 Sum_probs=95.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
|+|.+|||||||+|++++..+... ...| .......+..++ ..+.+|||||.. .+. ++..+|
T Consensus 25 ivG~~~vGKSsL~~~~~~~~~~~~--~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~--~~~------------~~~~~~ 87 (184)
T 3ihw_A 25 IVGNLSSGKSALVHRYLTGTYVQE--ESPE-GGRFKKEIVVDGQSYLLLIRDEGGPP--ELQ------------FAAWVD 87 (184)
T ss_dssp EECCTTSCHHHHHHHHHHSSCCCC--CCTT-CEEEEEEEEETTEEEEEEEEECSSSC--CHH------------HHHHCS
T ss_pred EECCCCCCHHHHHHHHhcCCCCCC--cCCC-cceEEEEEEECCEEEEEEEEECCCCh--hhh------------eecCCC
Confidence 999999999999999998876422 2222 222223344444 567889999953 221 356799
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccC-CCCCCEEEEEecCCCCC----hhhHHHHHHHHHhcCCCceEEEcccCCCCC
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDH-KDKLPILLVLNKKDLIK----PGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 266 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~----~~~~~~~~~~~~~~~~~~~iv~iSA~~g~g 266 (409)
++++|+|+++... ....++..+.... ..+.|+++|+||+|+.. .........+.. ..+..+++++||++|.|
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~-~~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLST-DLKRCTYYETCATYGLN 166 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHH-HTTTCEEEEEBTTTTBT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHH-HcCCCeEEEecCCCCCC
Confidence 9999999987542 2233333332221 14689999999999842 111222222222 23345899999999999
Q ss_pred HHHHHHHHHhhC
Q 015293 267 VEDIRDWILTKL 278 (409)
Q Consensus 267 i~~L~~~L~~~l 278 (409)
+++++++|.+.+
T Consensus 167 v~~lf~~l~~~i 178 (184)
T 3ihw_A 167 VERVFQDVAQKV 178 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 139
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.77 E-value=3.9e-18 Score=164.98 Aligned_cols=161 Identities=16% Similarity=0.120 Sum_probs=111.2
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeC-CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~-~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
.++ ++|.+|||||||+|++++.....++..+++|.+.....+.. ++..+.+|||||. ..+ ....+......++.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~--~~~--~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQ--DVF--MENYFTKQKDHIFQ 79 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCS--HHH--HHHHHTTTHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCc--HHH--hhhhhhhHHHHHhc
Confidence 344 99999999999999999986666777888888777666653 6789999999995 322 11111233445578
Q ss_pred CcceEEEEeeCCCCCChHHH-HH---HHHhccCCCCCCEEEEEecCCCCChhhHH-------HHHHHHHhcCCC--ceEE
Q 015293 191 NADCIVVLVDACKAPERIDE-IL---EEGVGDHKDKLPILLVLNKKDLIKPGEIA-------KKLEWYEKFTDV--DEVI 257 (409)
Q Consensus 191 ~aDvillVvD~~~~~~~~~~-~l---~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~-------~~~~~~~~~~~~--~~iv 257 (409)
.+|++++|+|+++....... .+ ...+.....+.|+++|+||+|+....... .....+....++ .+++
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~ 159 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGF 159 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEE
T ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 99999999999887532211 11 11122112579999999999998732221 222333333442 6899
Q ss_pred EcccCCCCCHHHHHHHHHhhC
Q 015293 258 PVSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 258 ~iSA~~g~gi~~L~~~L~~~l 278 (409)
++||++ .|+.+++..+...+
T Consensus 160 ~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 160 PTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp ECCTTS-SHHHHHHHHHHHTT
T ss_pred EeeecC-ChHHHHHHHHHHHH
Confidence 999999 88999888887755
No 140
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=9.4e-19 Score=160.26 Aligned_cols=155 Identities=21% Similarity=0.218 Sum_probs=97.3
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
++ |+|.+|||||||+|++++.....++..+.++.+.....+..++ .++.+|||+|.... .. ++ ...+++
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~-~~-----~l--~~~~~~ 110 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE-NE-----WL--HDHCMQ 110 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH-HH-----HH--HHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch-hh-----hH--HHHHHh
Confidence 44 9999999999999999986654444444443333333333333 46789999994321 11 11 234567
Q ss_pred CcceEEEEeeCCCCC--ChHHHHHHHHhcc-CCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCC
Q 015293 191 NADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGH 265 (409)
Q Consensus 191 ~aDvillVvD~~~~~--~~~~~~l~~~l~~-~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~ 265 (409)
.+|++++|+|+++.. .....++..+... ...++|++||+||+|+..... ......+... .+ .++++|||++|.
T Consensus 111 ~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~-~~-~~~~e~SAk~g~ 188 (211)
T 2g3y_A 111 VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVV-FD-CKFIETSAAVQH 188 (211)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHH-HT-CEEEECBTTTTB
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHH-cC-CEEEEEeCCCCC
Confidence 899999999998643 2222333222221 114799999999999964321 1111111111 12 378999999999
Q ss_pred CHHHHHHHHHhhC
Q 015293 266 GVEDIRDWILTKL 278 (409)
Q Consensus 266 gi~~L~~~L~~~l 278 (409)
||++++++|.+.+
T Consensus 189 ~v~elf~~l~~~i 201 (211)
T 2g3y_A 189 NVKELFEGIVRQV 201 (211)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 141
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.76 E-value=4.8e-18 Score=161.55 Aligned_cols=160 Identities=16% Similarity=0.186 Sum_probs=93.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeec-------CCCceEEEEEEEEeCCC--eeEEEEeCCCCchh-----hhhhHhHHH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTN-------KPQTTRHRILGICSGPE--YQMILYDTPGIIEK-----KIHMLDSMM 181 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~-------~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~-----~~~~l~~~~ 181 (409)
++|.+|+|||||+|+|++.+...... .+.++.+.....+..++ ..+.+|||||+.+. ....+...+
T Consensus 13 vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i 92 (274)
T 3t5d_A 13 VVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYI 92 (274)
T ss_dssp EEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHH
Confidence 99999999999999999988764432 33334444444455554 48999999998431 122232222
Q ss_pred HHHHHHhhc-------------CcceEEEEeeCCC-CCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHH
Q 015293 182 MKNVRSAGI-------------NADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWY 247 (409)
Q Consensus 182 ~~~~~~~~~-------------~aDvillVvD~~~-~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~ 247 (409)
..+...++. .+|+++++++.+. +....+..++..+.. ++|+|+|+||+|+....+.......+
T Consensus 93 ~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~~~~~~~i 169 (274)
T 3t5d_A 93 DSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEECQQFKKQI 169 (274)
T ss_dssp HHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHHHHHHHHH
Confidence 222222232 3788999887654 567777777766653 79999999999998766654433222
Q ss_pred Hh---cCCCceEEEcccCCCCCHHHHHHHHHhhCC
Q 015293 248 EK---FTDVDEVIPVSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 248 ~~---~~~~~~iv~iSA~~g~gi~~L~~~L~~~l~ 279 (409)
.. ..+ .+++++||++++|+++|+++|.+.+|
T Consensus 170 ~~~l~~~~-i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 170 MKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHTT-CCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHcC-CeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 21 112 36788999999999999999999876
No 142
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.76 E-value=1.2e-19 Score=190.20 Aligned_cols=153 Identities=18% Similarity=0.180 Sum_probs=84.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeee------------------------------cCCCceEEEEEEEEeCCCeeEEEEe
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVT------------------------------NKPQTTRHRILGICSGPEYQMILYD 165 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~------------------------------~~~~tt~~~~~~~~~~~~~~i~liD 165 (409)
++|++|+|||||+|+|++....+.+ ..+|+|.+.....+..++..+.|||
T Consensus 182 iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i~iiD 261 (592)
T 3mca_A 182 VTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGD 261 (592)
T ss_dssp EECCSSSTHHHHHHHHHHHHHCC------------------------------------------------------CCE
T ss_pred EEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEEEEEE
Confidence 9999999999999999754322221 1457788877777778888999999
Q ss_pred CCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCC-------ChHHHHHHHHhccCCCCCC-EEEEEecCCCCC-
Q 015293 166 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLP-ILLVLNKKDLIK- 236 (409)
Q Consensus 166 tpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~-------~~~~~~l~~~l~~~~~~~p-~ilvlNK~Dl~~- 236 (409)
|||+.+ +. ..+..++..||++|+|+|++.+. ..++...+..+.. .+.| +|+|+||+|+..
T Consensus 262 TPGh~~--f~-------~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--lgip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 262 APGHRD--FI-------SGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--LGISEIVVSVNKLDLMSW 330 (592)
T ss_dssp EESSSE--EE-------EECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--SSCCCEEEEEECGGGGTT
T ss_pred CCChHH--HH-------HHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEeccccccc
Confidence 999643 21 11234467899999999998753 4555555555544 4565 999999999975
Q ss_pred -hhhHHHHHHHHH----hcCCC----ceEEEcccCCCCCHH--------------HHHHHHHhhCC
Q 015293 237 -PGEIAKKLEWYE----KFTDV----DEVIPVSAKYGHGVE--------------DIRDWILTKLP 279 (409)
Q Consensus 237 -~~~~~~~~~~~~----~~~~~----~~iv~iSA~~g~gi~--------------~L~~~L~~~l~ 279 (409)
..........+. ...++ .+++++||++|.|+. .|++.|...++
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 322222222222 11233 379999999999998 79999988765
No 143
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.75 E-value=5e-19 Score=181.58 Aligned_cols=147 Identities=18% Similarity=0.138 Sum_probs=99.2
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcce------------------------------eeecCCCceEEEEEEEEeCCCeeE
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLS------------------------------IVTNKPQTTRHRILGICSGPEYQM 161 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~------------------------------~v~~~~~tt~~~~~~~~~~~~~~i 161 (409)
..+ ++|++|+|||||+|+|++.... ......|.|.+.....+...+..+
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~ 113 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANF 113 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCceE
Confidence 344 9999999999999999765211 112234667776666778888999
Q ss_pred EEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCC-------CChHHHHHHHHhccCCCCCCEEEEEecCCC
Q 015293 162 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKLPILLVLNKKDL 234 (409)
Q Consensus 162 ~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~-------~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl 234 (409)
.||||||+.+ +...+..++..||++|+|+|++++ ...+..+....+... ...|+|+|+||+|+
T Consensus 114 ~iiDTPG~~~---------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl 183 (483)
T 3p26_A 114 TIVDAPGHRD---------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDN 183 (483)
T ss_dssp EEECCCCCGG---------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGG
T ss_pred EEEECCCcHH---------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCc
Confidence 9999999632 334456668899999999999986 334555555544441 23579999999999
Q ss_pred CCh--hhHHHHHHH----HHhcC---CCceEEEcccCCCCCHHH
Q 015293 235 IKP--GEIAKKLEW----YEKFT---DVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 235 ~~~--~~~~~~~~~----~~~~~---~~~~iv~iSA~~g~gi~~ 269 (409)
... ......... +.... ...+++++||++|.|+++
T Consensus 184 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 184 VDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 762 222222222 22111 135799999999999985
No 144
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.75 E-value=2e-18 Score=155.10 Aligned_cols=155 Identities=22% Similarity=0.257 Sum_probs=94.7
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
++ ++|.||||||||+|++++.....++..+.++.+.....+..++ ..+.+|||+|.... ...+. ..+++
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~-~~~~~-------~~~~~ 79 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGE-NEWLH-------DHCMQ 79 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-----CTTG-------GGHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcch-hhhHH-------Hhhcc
Confidence 44 9999999999999999975544444444443333333333343 46789999995321 12221 22356
Q ss_pred CcceEEEEeeCCCCC--ChHHHHHHHHhcc-CCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCC
Q 015293 191 NADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGH 265 (409)
Q Consensus 191 ~aDvillVvD~~~~~--~~~~~~l~~~l~~-~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~ 265 (409)
.+|++++|+|+++.. .....++..+... ...+.|+++|+||+|+..... .... ..+....+ .+++++||++|.
T Consensus 80 ~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~-~~~a~~~~-~~~~e~SA~~g~ 157 (192)
T 2cjw_A 80 VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEG-RAXAVVFD-XKFIETSAAVQH 157 (192)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHH-HHHHHHTT-CEEEECBTTTTB
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHH-HHHHHHhC-CceEEeccccCC
Confidence 789999999998643 2222232222211 114789999999999864221 1111 11222222 378999999999
Q ss_pred CHHHHHHHHHhhC
Q 015293 266 GVEDIRDWILTKL 278 (409)
Q Consensus 266 gi~~L~~~L~~~l 278 (409)
||++++++|.+.+
T Consensus 158 ~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 158 NVKELFEGIVRQV 170 (192)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998866
No 145
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.75 E-value=1.5e-18 Score=157.88 Aligned_cols=151 Identities=17% Similarity=0.133 Sum_probs=97.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeC--CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~--~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|+|++..+. .....|+.......+.. ....+.||||||. ..+..+ ...++..+|
T Consensus 33 vvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~~~~d 101 (205)
T 1gwn_A 33 VVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGS--PYYDNV-------RPLSYPDSD 101 (205)
T ss_dssp EEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSSEEEEEEEEECCS--GGGTTT-------GGGGCTTCS
T ss_pred EECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCEEEEEEEEeCCCc--HhhhHH-------HHhhccCCC
Confidence 9999999999999999987764 22233333322223333 3468999999995 333333 234578999
Q ss_pred eEEEEeeCCCCCChHH--HHHHHHhccCCCCCCEEEEEecCCCCChh--------------hHHHHHHHHHhcCCCceEE
Q 015293 194 CIVVLVDACKAPERID--EILEEGVGDHKDKLPILLVLNKKDLIKPG--------------EIAKKLEWYEKFTDVDEVI 257 (409)
Q Consensus 194 villVvD~~~~~~~~~--~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~--------------~~~~~~~~~~~~~~~~~iv 257 (409)
++++|+|+++...... ..+...+.....+.|+++|+||+|+.... .......+... .+..+++
T Consensus 102 ~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~ 180 (205)
T 1gwn_A 102 AVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ-IGAATYI 180 (205)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH-HTCSEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHH-cCCCEEE
Confidence 9999999987542111 22223333222579999999999996421 11111222222 2334799
Q ss_pred EcccC-CCCCHHHHHHHHHhhC
Q 015293 258 PVSAK-YGHGVEDIRDWILTKL 278 (409)
Q Consensus 258 ~iSA~-~g~gi~~L~~~L~~~l 278 (409)
+|||+ +|.|++++++.|.+.+
T Consensus 181 e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 181 ECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp ECCTTTCHHHHHHHHHHHHHHH
T ss_pred EeeeccCCcCHHHHHHHHHHHH
Confidence 99999 6899999999988653
No 146
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.75 E-value=3.6e-20 Score=166.99 Aligned_cols=154 Identities=18% Similarity=0.168 Sum_probs=93.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
|+|.+|||||||+|+|++..+.. ...+.++.+.....+..++ ..+.+|||||. ..+..+ ...++..+|
T Consensus 38 vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~~~~d 107 (199)
T 3l0i_B 38 LIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ--ERFRTI-------TSSYYRGAH 107 (199)
T ss_dssp EECCTTSCCTTTTTSSBCCCCCC-HHHHHHCCSEEEEEEEETTEEEEEEEECCTTC--TTCCCC-------SCC--CCCS
T ss_pred EECCCCCCHHHHHHHHhcCCCCC-CcCCcccceEEEEEEEECCEEEEEEEEECCCc--HhHHHH-------HHHHhhcCC
Confidence 99999999999999999877542 2233333333334444444 67999999994 333322 223478999
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~-~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
++++|+|+++... ....++.........+.|+++|+||+|+.....+. .....+....+ .+++++||++|.|++++
T Consensus 108 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 108 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQS 186 (199)
T ss_dssp EEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTT-CCBCCCCC---HHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcC-CeEEEEECCCCCCHHHH
Confidence 9999999987542 22233333322222478999999999997432211 00111222222 37899999999999999
Q ss_pred HHHHHhhCCC
Q 015293 271 RDWILTKLPL 280 (409)
Q Consensus 271 ~~~L~~~l~~ 280 (409)
+++|.+.+..
T Consensus 187 ~~~l~~~l~~ 196 (199)
T 3l0i_B 187 FMTMAAEIKK 196 (199)
T ss_dssp HHHHTTTTTT
T ss_pred HHHHHHHHHH
Confidence 9999887753
No 147
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.75 E-value=1.4e-19 Score=186.65 Aligned_cols=153 Identities=20% Similarity=0.254 Sum_probs=113.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeC-CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~-~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDv 194 (409)
++|++|+|||||+|+|++..+.. ...+++|.+.....+.. ++..+.||||||+ ..+..+ ....+..+|+
T Consensus 9 IvG~~~vGKTSLl~~L~~~~~~~-~~~~giT~~i~~~~v~~~~g~~i~~iDTPGh--e~f~~~-------~~~~~~~aD~ 78 (537)
T 3izy_P 9 IMGHVDHGKTTLLDKLRKTQVAA-MEAGGITQHIGAFLVSLPSGEKITFLDTPGH--AAFSAM-------RARGTQVTDI 78 (537)
T ss_dssp EEESTTTTHHHHHHHHHHHHHHH-SSSCCBCCCTTSCCBCSSCSSCCBCEECSSS--CCTTTS-------BBSSSBSBSS
T ss_pred EECCCCCCHHHHHHHHhCCCccc-ccCCceeEEEeEEEEEeCCCCEEEEEECCCh--HHHHHH-------HHHHHccCCE
Confidence 99999999999999999887653 45677777765555554 5678999999994 343333 2344788999
Q ss_pred EEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHH----HhcCCCceEEEcccCCCCCHH
Q 015293 195 IVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWY----EKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 195 illVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~----~~~~~~~~iv~iSA~~g~gi~ 268 (409)
+++|+|++++...++...+..+.. .+.|+++|+||+|+..... .......+ ..+....+++++||++|.|++
T Consensus 79 vILVVDa~dg~~~qt~e~l~~~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 79 VILVVAADDGVMKQTVESIQHAKD--AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp CEEECBSSSCCCHHHHHHHHHHHT--TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEEEEECCCCccHHHHHHHHHHHH--cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 999999999888887777777666 6789999999999864221 11111111 112233589999999999999
Q ss_pred HHHHHHHhhCCC
Q 015293 269 DIRDWILTKLPL 280 (409)
Q Consensus 269 ~L~~~L~~~l~~ 280 (409)
+|+++|...++.
T Consensus 157 eLle~I~~l~~~ 168 (537)
T 3izy_P 157 ALAEATIALAEM 168 (537)
T ss_dssp HHHHHHHHHHTT
T ss_pred hHHHHHHHhhhc
Confidence 999999987653
No 148
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.74 E-value=7.6e-18 Score=149.92 Aligned_cols=155 Identities=14% Similarity=0.088 Sum_probs=95.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCc-eEEEEEEEEe-----CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQT-TRHRILGICS-----GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 189 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~t-t~~~~~~~~~-----~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~ 189 (409)
|+|.+|||||||+|+|.+...........| ..+.....+. .....+.+|||||. +.+..+.. .++
T Consensus 7 ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~~-------~~~ 77 (184)
T 2zej_A 7 IVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGR--EEFYSTHP-------HFM 77 (184)
T ss_dssp EESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSH--HHHHTTSH-------HHH
T ss_pred EECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCC--HHHHHhhH-------HHc
Confidence 999999999999999998642222222222 2332222221 24568999999994 44444432 235
Q ss_pred cCcceEEEEeeCCCCC---ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHH----HHHHHHhcCCCc---eEEEc
Q 015293 190 INADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK----KLEWYEKFTDVD---EVIPV 259 (409)
Q Consensus 190 ~~aDvillVvD~~~~~---~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~----~~~~~~~~~~~~---~iv~i 259 (409)
..+|++++|+|++++. .....++...... ..+.|+++|+||+|+........ ....+....++. +++++
T Consensus 78 ~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
T 2zej_A 78 TQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR-ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFV 156 (184)
T ss_dssp HHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHH-CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEEC
T ss_pred cCCcEEEEEEeCCcchhHHHHHHHHHHHHHhh-CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEE
Confidence 6789999999998763 2233344333222 24789999999999986544321 222233223332 38999
Q ss_pred ccCCCC-CHHHHHHHHHhhCCC
Q 015293 260 SAKYGH-GVEDIRDWILTKLPL 280 (409)
Q Consensus 260 SA~~g~-gi~~L~~~L~~~l~~ 280 (409)
||++|. |+++|++.|.+.+..
T Consensus 157 Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 157 NATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp CTTSCCHHHHHHHHHHHHHHHC
T ss_pred ecccCchhHHHHHHHHHHHHhc
Confidence 999997 999999999887654
No 149
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.74 E-value=2.4e-18 Score=153.65 Aligned_cols=149 Identities=16% Similarity=0.134 Sum_probs=97.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEE--eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~--~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+|+|++..+. .....|+.+...... ......+.+|||||. ..+..+. .++..+|
T Consensus 26 vvG~~~vGKTsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~--------~~~~~~~ 93 (187)
T 3c5c_A 26 ILGRRGAGKSALTVKFLTKRFI--SEYDPNLEDTYSSEETVDHQPVHLRVMDTADL--DTPRNCE--------RYLNWAH 93 (187)
T ss_dssp EECCTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----CCCTH--------HHHTTCS
T ss_pred EECCCCCcHHHHHHHHHhCCCC--cccCCCccceeeEEEEECCEEEEEEEEECCCC--CcchhHH--------HHHhhCC
Confidence 9999999999999999988753 444555544433333 333467889999994 3333331 2467899
Q ss_pred eEEEEeeCCCCC--ChHHHHHHHHhccC---CCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEccc-CCCC
Q 015293 194 CIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSA-KYGH 265 (409)
Q Consensus 194 villVvD~~~~~--~~~~~~l~~~l~~~---~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA-~~g~ 265 (409)
++++|+|+++.. .....++....... ..+.|+++|+||+|+..... ......+.... + .+++++|| ++|.
T Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~e~Sa~~~g~ 171 (187)
T 3c5c_A 94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRF-G-CLFFEVSACLDFE 171 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHH-T-CEEEECCSSSCSH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHc-C-CcEEEEeecCccc
Confidence 999999998653 22222332222210 14799999999999864221 12222222222 3 37999999 8999
Q ss_pred CHHHHHHHHHhhC
Q 015293 266 GVEDIRDWILTKL 278 (409)
Q Consensus 266 gi~~L~~~L~~~l 278 (409)
|++++++.|.+.+
T Consensus 172 gv~~lf~~l~~~i 184 (187)
T 3c5c_A 172 HVQHVFHEAVREA 184 (187)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 9999999998754
No 150
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.74 E-value=1.6e-17 Score=166.89 Aligned_cols=156 Identities=17% Similarity=0.182 Sum_probs=104.9
Q ss_pred EEecCCCChHHHHHHHhCCccee--eecCCCceEEEEEEEEeC------------------C-----CeeEEEEeCCCCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGICSG------------------P-----EYQMILYDTPGII 170 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~--v~~~~~tt~~~~~~~~~~------------------~-----~~~i~liDtpG~~ 170 (409)
++|++|+|||||+++|+|..... ....++.|.+........ + ...+.||||||
T Consensus 15 iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPG-- 92 (410)
T 1kk1_A 15 MVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPG-- 92 (410)
T ss_dssp EECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSS--
T ss_pred EECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCC--
Confidence 99999999999999999764321 122344454322211111 0 16799999999
Q ss_pred hhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCC-ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHH----HHH
Q 015293 171 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK----KLE 245 (409)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~-~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~----~~~ 245 (409)
+.. +...+...+..+|++|+|+|++++. ..+....+..+... ...|+++|+||+|+........ ...
T Consensus 93 h~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~ 164 (410)
T 1kk1_A 93 HEA-------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQKNIIIAQNKIELVDKEKALENYRQIKE 164 (410)
T ss_dssp HHH-------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred hHH-------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEECccCCCHHHHHHHHHHHHH
Confidence 432 3345566678999999999999875 55555444444332 3368999999999987553222 222
Q ss_pred HHHhc-CCCceEEEcccCCCCCHHHHHHHHHhhCCCC
Q 015293 246 WYEKF-TDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 281 (409)
Q Consensus 246 ~~~~~-~~~~~iv~iSA~~g~gi~~L~~~L~~~l~~~ 281 (409)
++... ....+++++||++|.|+++|+++|.+.++..
T Consensus 165 ~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 165 FIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 22221 1245899999999999999999999988743
No 151
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.74 E-value=3.6e-18 Score=178.60 Aligned_cols=190 Identities=21% Similarity=0.231 Sum_probs=115.6
Q ss_pred EEecCCCChHHHHHHHhCCcceee--------e------cCCCceEEEEEEEEeC-----CCeeEEEEeCCCCchhhhhh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV--------T------NKPQTTRHRILGICSG-----PEYQMILYDTPGIIEKKIHM 176 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v--------~------~~~~tt~~~~~~~~~~-----~~~~i~liDtpG~~~~~~~~ 176 (409)
|+|++|+|||||+++|+.....+. . ...|.|.......+.+ .+..++||||||+.+ +
T Consensus 9 IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d--F-- 84 (599)
T 3cb4_D 9 IIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD--F-- 84 (599)
T ss_dssp EECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG--G--
T ss_pred EECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH--H--
Confidence 999999999999999986322111 1 1123343332223322 247899999999643 2
Q ss_pred HhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCC--c
Q 015293 177 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV--D 254 (409)
Q Consensus 177 l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~--~ 254 (409)
...+..++..||++|+|+|++++...++...+..... .+.|+++|+||+|+..... ......+....+. .
T Consensus 85 -----~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~--~~ipiIvViNKiDl~~a~~-~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 85 -----SYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME--MDLEVVPVLNKIDLPAADP-ERVAEEIEDIVGIDAT 156 (599)
T ss_dssp -----HHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH--TTCEEEEEEECTTSTTCCH-HHHHHHHHHHTCCCCT
T ss_pred -----HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEeeeccCcccccH-HHHHHHHHHHhCCCcc
Confidence 2234455788999999999999887666555444443 6789999999999976432 2222223322232 3
Q ss_pred eEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCccccCchHHHHHHHHHHHHHHh-hcCCCCCceeEEEEEEEEecCC
Q 015293 255 EVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFM-QYRNEVPYACQVNVVSYKTRPT 331 (409)
Q Consensus 255 ~iv~iSA~~g~gi~~L~~~L~~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~-~~~~eipys~~v~v~~~~~~~~ 331 (409)
+++++||++|.|+++|+++|.+.++..... .+.|.+.++ ++ .+.+.++..+.+++..+..+.+
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~------~~~p~~alI--------~d~~~d~~~G~v~~~rV~sG~l~~G 220 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDIPPPEGD------PEGPLQALI--------IDSWFDNYLGVVSLIRIKNGTLRKG 220 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHSCCCCCC------TTSCCEEEE--------EEEEEETTTEEEEEEEEEESCEESS
T ss_pred eEEEeecccCCCchhHHHHHhhcCCCcccc------ccCCceeee--------eeccccccccEEEEEEEEeCEEecC
Confidence 589999999999999999999999753221 112222111 11 2345677888888888776544
No 152
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.74 E-value=6.6e-18 Score=167.37 Aligned_cols=142 Identities=14% Similarity=0.097 Sum_probs=105.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|++|+|||||+++|+ ..+.|.+.....+..++..+.||||||+.+ +...+...+..+|++
T Consensus 26 iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~---------f~~~~~~~~~~aD~a 87 (370)
T 2elf_A 26 IIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPK---------TLKSLITALNISDIA 87 (370)
T ss_dssp EEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTT---------CHHHHHHHHHTCSEE
T ss_pred EECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHH---------HHHHHHHHHHHCCEE
Confidence 99999999999999998 233444444455677788999999999532 233445567899999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCE-EEEEe-cCCCCChhhHHHHHHHHHhcC-----CCceEEE--cccCC---
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLN-KKDLIKPGEIAKKLEWYEKFT-----DVDEVIP--VSAKY--- 263 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~-ilvlN-K~Dl~~~~~~~~~~~~~~~~~-----~~~~iv~--iSA~~--- 263 (409)
|+|+| +.+...+....+..+.. .+.|. ++++| |+|+ .........+.+.... ...++++ +||++
T Consensus 88 ilVvd-~~g~~~qt~e~~~~~~~--~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~ 163 (370)
T 2elf_A 88 VLCIP-PQGLDAHTGECIIALDL--LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNP 163 (370)
T ss_dssp EEEEC-TTCCCHHHHHHHHHHHH--TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSST
T ss_pred EEEEc-CCCCcHHHHHHHHHHHH--cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcC
Confidence 99999 87777777766666555 56787 99999 9999 6543333222222211 2358999 99999
Q ss_pred CCCHHHHHHHHHhhCC
Q 015293 264 GHGVEDIRDWILTKLP 279 (409)
Q Consensus 264 g~gi~~L~~~L~~~l~ 279 (409)
|.|+++|++.|.+.++
T Consensus 164 g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 164 FEGVDELKARINEVAE 179 (370)
T ss_dssp TTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhcc
Confidence 9999999999998765
No 153
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.74 E-value=2.3e-17 Score=165.74 Aligned_cols=159 Identities=17% Similarity=0.200 Sum_probs=98.5
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceee--ecCCCceEEEEEEEEeC---------------C--------CeeEEEEeC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSG---------------P--------EYQMILYDT 166 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v--~~~~~tt~~~~~~~~~~---------------~--------~~~i~liDt 166 (409)
..+ ++|++|+|||||+++|+|...... ...++.|.+........ . ...+.||||
T Consensus 9 ~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDt 88 (408)
T 1s0u_A 9 VNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDS 88 (408)
T ss_dssp EEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEEC
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEEC
Confidence 344 999999999999999997643211 22244454322111100 1 167999999
Q ss_pred CCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCC-ChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh----HH
Q 015293 167 PGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE----IA 241 (409)
Q Consensus 167 pG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~-~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~----~~ 241 (409)
|| +.. +...+...+..+|++|+|+|++++. ..+....+..+... ...|+++|+||+|+..... ..
T Consensus 89 PG--h~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l-~~~~iivv~NK~Dl~~~~~~~~~~~ 158 (408)
T 1s0u_A 89 PG--HET-------LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL-GIDKIIIVQNKIDLVDEKQAEENYE 158 (408)
T ss_dssp SS--HHH-------HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TCCCEEEEEECTTSSCTTTTTTHHH
T ss_pred CC--HHH-------HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc-CCCeEEEEEEccCCCCHHHHHHHHH
Confidence 99 432 3345566678899999999999875 55554444444331 3358999999999976432 22
Q ss_pred HHHHHHHhc-CCCceEEEcccCCCCCHHHHHHHHHhhCCCC
Q 015293 242 KKLEWYEKF-TDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 281 (409)
Q Consensus 242 ~~~~~~~~~-~~~~~iv~iSA~~g~gi~~L~~~L~~~l~~~ 281 (409)
+..+.+... ....+++++||++|.|+++|+++|.+.++..
T Consensus 159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 333333321 1235899999999999999999999988643
No 154
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.74 E-value=2.3e-20 Score=191.05 Aligned_cols=246 Identities=14% Similarity=0.109 Sum_probs=153.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 195 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvi 195 (409)
++|++|+|||||+++|++..+. ....++.|.+.....+..++..+.||||||+ ..+..+ ....+..+|++
T Consensus 9 IvGhvd~GKTTLl~~L~~~~v~-~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGh--e~f~~~-------~~~~~~~aD~a 78 (501)
T 1zo1_I 9 IMGHVDHGKTSLLEYIRSTKVA-SGEAGGITQHIGAYHVETENGMITFLDTPGH--AAFTSM-------RARGAQATDIV 78 (501)
T ss_dssp EEESTTSSSHHHHHHHHHHHHS-BTTBCCCCCCSSCCCCCTTSSCCCEECCCTT--TCCTTS-------BCSSSBSCSSE
T ss_pred EECCCCCCHHHHHHHHHcCCCc-cccCCCeeEeEEEEEEEECCEEEEEEECCCc--HHHHHH-------HHHHHhhCCEE
Confidence 9999999999999999986543 2334556655444455667788999999994 444333 22447889999
Q ss_pred EEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChh--hHHHHHHH---H-HhcCCCceEEEcccCCCCCHHH
Q 015293 196 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEW---Y-EKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 196 llVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~--~~~~~~~~---~-~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
++|+|++++...++...+..+.. .+.|+++++||+|+.... .+...+.. + ..+.+..+++++||++|.|+++
T Consensus 79 ILVVda~~g~~~qT~e~l~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~e 156 (501)
T 1zo1_I 79 VLVVAADDGVMPQTIEAIQHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDE 156 (501)
T ss_dssp EEEEETTTBSCTTTHHHHHHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTT
T ss_pred EEEeecccCccHHHHHHHHHHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcch
Confidence 99999998776665555555554 678999999999996421 11100000 0 1112235899999999999999
Q ss_pred HHHHHHhhCCCCCCCCCCccccCchHHHHHHHHHHHHHHhh-cCCCCCceeEEEEEEEEecCCCeeEEEEEEEEeeCCcc
Q 015293 270 IRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQ-YRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQK 348 (409)
Q Consensus 270 L~~~L~~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~-~~~eipys~~v~v~~~~~~~~~~~~i~~~i~v~~~~~~ 348 (409)
|+++|.......+...++ +.|.... +++. ..+..+....+.+..+..+.+..+.+ ....++.
T Consensus 157 Lle~I~~~~~~~~~~~~~----~~~~~~~--------V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~-----g~~~~kV 219 (501)
T 1zo1_I 157 LLDAILLQAEVLELKAVR----KGMASGA--------VIESFLDKGRGPVATVLVREGTLHKGDIVLC-----GFEYGRV 219 (501)
T ss_dssp HHHHTTTTCCCSTTTSCC----CSBCEEE--------EEEEEECSSSSEEEEEEEEESBCCTTCEEEE-----EBSSCEE
T ss_pred hhhhhhhhhhhhcccccc----ccccccc--------eEEEEEeCCcEEEEEEEEEeeEEecCCEEEE-----ccceeEE
Confidence 999987643211111111 1111100 1111 12345555666666666665533322 2345666
Q ss_pred eEEeecCCchHHHHHHHHHHHHHHHcCCcEEEEEEEEeCC-Cc
Q 015293 349 IILIGKGGKALKLLATAARLDIEDFLQKKVYLEIEVKVKE-NW 390 (409)
Q Consensus 349 ~iliG~~G~~ik~i~~~ar~~l~~~~~~~v~l~l~vkv~~-~w 390 (409)
+.+.+..|..+++++...+..+..+.+.+...+..+.+.. +|
T Consensus 220 r~i~~~~g~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~~~~~~~ 262 (501)
T 1zo1_I 220 RAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKK 262 (501)
T ss_dssp EEECCTTTTSEEEECCSSCSSSEEECSCCCTTEEEEEECSSCT
T ss_pred EEEEecCCCcCcEeccCCcEEEeCCCCCCCCCCEEEecCCHHH
Confidence 7777777877777776666665544455666777777754 45
No 155
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.59 E-value=1.6e-19 Score=163.30 Aligned_cols=152 Identities=17% Similarity=0.110 Sum_probs=98.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|.+|||||||+++|++..+. .....|+.+.....+..+ ...+.+|||||. ..+.. ....++..+|
T Consensus 35 v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~~~~~~d 103 (204)
T 3th5_A 35 VVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ--EDYDR-------LRPLSYPQTD 103 (204)
Confidence 9999999999999999977653 344445544443333333 356679999994 33222 2334577899
Q ss_pred eEEEEeeCCCCCCh--HHHHHHHHhccCCCCCCEEEEEecCCCCChhhHH-------------HHHHHHHhcCCCceEEE
Q 015293 194 CIVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTDVDEVIP 258 (409)
Q Consensus 194 villVvD~~~~~~~--~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~-------------~~~~~~~~~~~~~~iv~ 258 (409)
++++|+|++++... ....+...+.....+.|+++|+||+|+....... .....+....+..++++
T Consensus 104 ~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (204)
T 3th5_A 104 VFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183 (204)
Confidence 99999999876422 2213333333322478999999999997532111 00111112223347899
Q ss_pred cccCCCCCHHHHHHHHHhhC
Q 015293 259 VSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 259 iSA~~g~gi~~L~~~L~~~l 278 (409)
+||++|.|+++|+++|.+.+
T Consensus 184 vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 184 CSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 99999999999999987643
No 156
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.73 E-value=8e-18 Score=168.90 Aligned_cols=155 Identities=19% Similarity=0.201 Sum_probs=110.5
Q ss_pred EEecCCCChHHHHHHHhCC--------cceee--e------cCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhH
Q 015293 116 VLGKPNVGKSTLANQMIGQ--------KLSIV--T------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDS 179 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~--------~~~~v--~------~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~ 179 (409)
++|++|+|||||+|+|++. .+... . ...+.|.+.....+...+..+.||||||+.+
T Consensus 16 iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~-------- 87 (405)
T 2c78_A 16 TIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD-------- 87 (405)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG--------
T ss_pred EEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH--------
Confidence 9999999999999999873 11100 0 1345565555555667788999999999543
Q ss_pred HHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCC-EEEEEecCCCCChhh-HH----HHHHHHHhcC--
Q 015293 180 MMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGE-IA----KKLEWYEKFT-- 251 (409)
Q Consensus 180 ~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilvlNK~Dl~~~~~-~~----~~~~~~~~~~-- 251 (409)
+...+..++..+|++|+|+|++++...+...++..+.. .+.| +++|+||+|+..... .. +....+....
T Consensus 88 -f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~--~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (405)
T 2c78_A 88 -YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP 164 (405)
T ss_dssp -GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred -HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc
Confidence 23445566789999999999999887777666666655 5778 899999999984222 21 1222232221
Q ss_pred -CCceEEEcccCCCCC------------------HHHHHHHHHhhCCCC
Q 015293 252 -DVDEVIPVSAKYGHG------------------VEDIRDWILTKLPLG 281 (409)
Q Consensus 252 -~~~~iv~iSA~~g~g------------------i~~L~~~L~~~l~~~ 281 (409)
...+++++||++|.| +.+|+++|.+.++..
T Consensus 165 ~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p 213 (405)
T 2c78_A 165 GDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP 213 (405)
T ss_dssp TTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred ccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence 125899999999987 889999999988743
No 157
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.73 E-value=3e-17 Score=164.26 Aligned_cols=154 Identities=19% Similarity=0.172 Sum_probs=110.0
Q ss_pred EEecCCCChHHHHHHHhCCcc-------e--------eeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHH
Q 015293 116 VLGKPNVGKSTLANQMIGQKL-------S--------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSM 180 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~-------~--------~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~ 180 (409)
++|++|+|||||+++|++... . ......+.|.+.....+..++..+.||||||+ ..
T Consensus 8 iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~--~~------- 78 (397)
T 1d2e_A 8 TIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGH--AD------- 78 (397)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSH--HH-------
T ss_pred EEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCCh--HH-------
Confidence 999999999999999987411 0 01123456666555556677789999999994 32
Q ss_pred HHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCC-EEEEEecCCCCChhh-HH----HHHHHHHhcC---
Q 015293 181 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGE-IA----KKLEWYEKFT--- 251 (409)
Q Consensus 181 ~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilvlNK~Dl~~~~~-~~----~~~~~~~~~~--- 251 (409)
+...+..++..+|++|+|+|++++...+....+..+.. .+.| +++|+||+|+..... .. +..+.+....
T Consensus 79 f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 79 YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ--IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 33455667889999999999999887776666665555 5788 689999999985221 11 2222332221
Q ss_pred CCceEEEcccCCCCC----------HHHHHHHHHhhCCC
Q 015293 252 DVDEVIPVSAKYGHG----------VEDIRDWILTKLPL 280 (409)
Q Consensus 252 ~~~~iv~iSA~~g~g----------i~~L~~~L~~~l~~ 280 (409)
...+++++||++|.| +.+|+++|.+.++.
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 135899999999764 89999999998874
No 158
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.73 E-value=9.3e-18 Score=162.61 Aligned_cols=156 Identities=18% Similarity=0.108 Sum_probs=105.5
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCe--eEEEEeCCCCchhhhhhHhHHHHHHHHHhh
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY--QMILYDTPGIIEKKIHMLDSMMMKNVRSAG 189 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~l~~~~~~~~~~~~ 189 (409)
..+ ++|.+|+|||||++++++..+ .....+|+.+.....+..++. .+.+|||||.. .+..+ ...++
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~~~~ 224 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE--DYDRL-------RPLSY 224 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCG--GGTTT-------GGGGC
T ss_pred eEEEEECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCEEEEEEEEeCCCch--hhhHH-------HHHhc
Confidence 344 999999999999999998765 355666777666555555554 45699999953 33322 33457
Q ss_pred cCcceEEEEeeCCCCCChHH--HHHHHHhccCCCCCCEEEEEecCCCCChhhHHH-------------HHHHHHhcCCCc
Q 015293 190 INADCIVVLVDACKAPERID--EILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTDVD 254 (409)
Q Consensus 190 ~~aDvillVvD~~~~~~~~~--~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~-------------~~~~~~~~~~~~ 254 (409)
..+|++++|+|++++..... ..+...+.....++|+++|+||+|+........ ....+....+..
T Consensus 225 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 304 (332)
T 2wkq_A 225 PQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 304 (332)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCc
Confidence 89999999999987542221 122233333224799999999999865321111 111122223445
Q ss_pred eEEEcccCCCCCHHHHHHHHHhhCC
Q 015293 255 EVIPVSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 255 ~iv~iSA~~g~gi~~L~~~L~~~l~ 279 (409)
+++++||++|.|+++|++.|.+.+.
T Consensus 305 ~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 305 KYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHh
Confidence 8999999999999999999987653
No 159
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.73 E-value=5e-19 Score=174.19 Aligned_cols=181 Identities=22% Similarity=0.347 Sum_probs=112.2
Q ss_pred EEecCCCChHHHHHHHhC------CcceeeecCCCceEE--------------------EEE---------EE-------
Q 015293 116 VLGKPNVGKSTLANQMIG------QKLSIVTNKPQTTRH--------------------RIL---------GI------- 153 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~------~~~~~v~~~~~tt~~--------------------~~~---------~~------- 153 (409)
|+|+||||||||+|+|++ .+++++...|+++.. .+. +.
T Consensus 79 lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr~~~~~ 158 (349)
T 2www_A 79 LSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEA 158 (349)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CTTHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchHHHHHH
Confidence 999999999999999986 344444444443320 000 00
Q ss_pred ---EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEe
Q 015293 154 ---CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 230 (409)
Q Consensus 154 ---~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlN 230 (409)
+...+..+.|+||||+.+.. . .....+|++++|+|++.+... ..+...+ ...|.++|+|
T Consensus 159 ~~~~~~~~~~~iliDT~Gi~~~~-~-----------~l~~~~d~vl~V~d~~~~~~~--~~i~~~i----l~~~~ivVlN 220 (349)
T 2www_A 159 ILLCEGAGYDIILIETVGVGQSE-F-----------AVADMVDMFVLLLPPAGGDEL--QGIKRGI----IEMADLVAVT 220 (349)
T ss_dssp HHHHHHTTCSEEEEECCCC--CH-H-----------HHHTTCSEEEEEECCC------------------CCSCSEEEEC
T ss_pred HHhhccCCCCEEEEECCCcchhh-h-----------hHHhhCCEEEEEEcCCcchhH--HHhHHHH----HhcCCEEEEe
Confidence 12356789999999985321 1 124689999999999865321 1111111 2468899999
Q ss_pred cCCCCChhhHHHHHHHH----HhcC-----CCceEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCccccCc---hHHHH
Q 015293 231 KKDLIKPGEIAKKLEWY----EKFT-----DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEH---PERFF 298 (409)
Q Consensus 231 K~Dl~~~~~~~~~~~~~----~~~~-----~~~~iv~iSA~~g~gi~~L~~~L~~~l~~~~~~~~~~~~t~~---~~r~~ 298 (409)
|+|+............+ .... ...+++++||++|.|+++|+++|.+.++. .++...+++. +.+++
T Consensus 221 K~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~---~~~~~~~~~~R~~~~~~~ 297 (349)
T 2www_A 221 KSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL---MLASGELTAKRRKQQKVW 297 (349)
T ss_dssp CCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH---HHHHSHHHHHHHHHHHHH
T ss_pred eecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH---HhhCchHHHHHHHHHHHH
Confidence 99997543222111112 1111 13478999999999999999999987643 2333344443 56778
Q ss_pred HHHHHHHHHHhhcCCCCCc
Q 015293 299 VGEIIREKIFMQYRNEVPY 317 (409)
Q Consensus 299 i~EiiRe~i~~~~~~eipy 317 (409)
+.+++|++++..+.+++|+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~ 316 (349)
T 2www_A 298 MWNLIQESVLEHFRTHPTV 316 (349)
T ss_dssp HHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHHHHhCcch
Confidence 8999999999888877765
No 160
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=153.93 Aligned_cols=162 Identities=16% Similarity=0.238 Sum_probs=104.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCC--CceEEEEEEEEeCCCeeEEEEeCCCCchhhh--hhHhHHHHHHHHHhhcC
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKP--QTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~--~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~--~~l~~~~~~~~~~~~~~ 191 (409)
|+|.+|||||||+|+|+|.... .+..+ ++|.+.....+.+++..+.||||||+..... ..+...+.+.+..+...
T Consensus 34 lvG~~g~GKStlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (239)
T 3lxx_A 34 LVGKTGAGKSATGNSILGRKVF-HSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPG 112 (239)
T ss_dssp EECCTTSSHHHHHHHHHTSCCS-CC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTC
T ss_pred EECCCCCCHHHHHHHHcCCCcC-ccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998874 34444 6777777777888889999999999865221 12333455556666788
Q ss_pred cceEEEEeeCCCCCChHHHHHHHHhccCC--CCCCEEEEEecCCCCChhhHH--------HHHHHHHhcCCCceEEEccc
Q 015293 192 ADCIVVLVDACKAPERIDEILEEGVGDHK--DKLPILLVLNKKDLIKPGEIA--------KKLEWYEKFTDVDEVIPVSA 261 (409)
Q Consensus 192 aDvillVvD~~~~~~~~~~~l~~~l~~~~--~~~p~ilvlNK~Dl~~~~~~~--------~~~~~~~~~~~~~~iv~iSA 261 (409)
+|++|+|+|+++.......++..+...+. ...|+++|+||+|+.....+. ........... .++.+++
T Consensus 113 ~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~--~~~~~~~ 190 (239)
T 3lxx_A 113 PHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD--RYCALNN 190 (239)
T ss_dssp CSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS--SEEECCT
T ss_pred CcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC--EEEEEEC
Confidence 99999999998654443333333322111 246999999999997654433 12222333332 3566665
Q ss_pred CCC-----CCHHHHHHHHHhhCCC
Q 015293 262 KYG-----HGVEDIRDWILTKLPL 280 (409)
Q Consensus 262 ~~g-----~gi~~L~~~L~~~l~~ 280 (409)
..+ .|+.+|++.+...+..
T Consensus 191 ~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 191 KATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHHHHHHHH
Confidence 543 7999999998887753
No 161
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.73 E-value=8.3e-17 Score=145.73 Aligned_cols=164 Identities=22% Similarity=0.219 Sum_probs=101.0
Q ss_pred eeE-EEecCCCChHHHHHHHhCCc-ceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh-----hhHhHHHHHHH
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-----HMLDSMMMKNV 185 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~-~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~-----~~l~~~~~~~~ 185 (409)
..+ ++|++|||||||+|+|+|.. ...+++.+|+|...... ..++ .+.++||||+..... .... ......
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~--~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~-~~~~~~ 102 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLF--EVAD-GKRLVDLPGYGYAEVPEEMKRKWQ-RALGEY 102 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-------------CCEEEE--EEET-TEEEEECCCCC------CCHHHHH-HHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEE--EecC-CEEEEECcCCcccccCHHHHHHHH-HHHHHH
Confidence 344 99999999999999999987 45567778877653322 2222 688999999743110 0111 112223
Q ss_pred HHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhH----HHHHHHHHhcCCCceEEEccc
Q 015293 186 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI----AKKLEWYEKFTDVDEVIPVSA 261 (409)
Q Consensus 186 ~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~----~~~~~~~~~~~~~~~iv~iSA 261 (409)
......+|.+++|+|++.+.......+...+.. .+.|+++|.||+|+....+. ......+........++++||
T Consensus 103 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 180 (210)
T 1pui_A 103 LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSS 180 (210)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBT
T ss_pred HHhhhcccEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEee
Confidence 333467899999999988765544445444444 67899999999999875432 223333333333457899999
Q ss_pred CCCCCHHHHHHHHHhhCCCCC
Q 015293 262 KYGHGVEDIRDWILTKLPLGP 282 (409)
Q Consensus 262 ~~g~gi~~L~~~L~~~l~~~~ 282 (409)
+++.|+++++++|.+.+..++
T Consensus 181 l~~~~~~~l~~~l~~~~~~~~ 201 (210)
T 1pui_A 181 LKKQGVDKLRQKLDTWFSEMQ 201 (210)
T ss_dssp TTTBSHHHHHHHHHHHHC---
T ss_pred cCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999998876543
No 162
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.73 E-value=2.2e-17 Score=172.40 Aligned_cols=191 Identities=24% Similarity=0.290 Sum_probs=117.1
Q ss_pred EEecCCCChHHHHHHHhCCcceee--------ec------CCCceEEEEEEEEeC-----CCeeEEEEeCCCCchhhhhh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIV--------TN------KPQTTRHRILGICSG-----PEYQMILYDTPGIIEKKIHM 176 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v--------~~------~~~tt~~~~~~~~~~-----~~~~i~liDtpG~~~~~~~~ 176 (409)
++|++|+|||||+++|+.....+. .+ ..|.|.......+.+ ....++||||||+.+ +
T Consensus 11 IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d--F-- 86 (600)
T 2ywe_A 11 IIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD--F-- 86 (600)
T ss_dssp EECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG--G--
T ss_pred EECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh--H--
Confidence 999999999999999986322111 01 112222111111211 236889999999644 2
Q ss_pred HhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCC--c
Q 015293 177 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV--D 254 (409)
Q Consensus 177 l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~--~ 254 (409)
...+..++..||++|+|+|++++...++...+..... .+.|+++|+||+|+.... .......+....++ .
T Consensus 87 -----~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~--~~ipiIvviNKiDl~~a~-~~~v~~el~~~lg~~~~ 158 (600)
T 2ywe_A 87 -----SYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE--QDLVIIPVINKIDLPSAD-VDRVKKQIEEVLGLDPE 158 (600)
T ss_dssp -----HHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH--TTCEEEEEEECTTSTTCC-HHHHHHHHHHTSCCCGG
T ss_pred -----HHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH--CCCCEEEEEeccCccccC-HHHHHHHHHHhhCCCcc
Confidence 2234455789999999999999887766655544444 679999999999997643 22333334433333 3
Q ss_pred eEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCccccCchHHHHHHHHHHHHHHh-hcCCCCCceeEEEEEEEEecCCC
Q 015293 255 EVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFM-QYRNEVPYACQVNVVSYKTRPTA 332 (409)
Q Consensus 255 ~iv~iSA~~g~gi~~L~~~L~~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~-~~~~eipys~~v~v~~~~~~~~~ 332 (409)
+++++||++|.|+++|+++|.+.++..... + +.|.+.. +++ .+.+..+..+.+.+..+..+.+.
T Consensus 159 ~vi~vSAktg~GI~~Lle~I~~~lp~p~~~-~-----~~pl~~l--------V~~~~~d~~~G~v~~~rV~sG~l~~Gd 223 (600)
T 2ywe_A 159 EAILASAKEGIGIEEILEAIVNRIPPPKGD-P-----QKPLKAL--------IFDSYYDPYRGAVAFVRIFDGEVKPGD 223 (600)
T ss_dssp GCEECBTTTTBSHHHHHHHHHHHSCCCCCC-T-----TSCCEEE--------EEEEEEETTTEEEEEEEEEESEECTTC
T ss_pred cEEEEEeecCCCchHHHHHHHHhccccccc-c-----cCCccee--------EEEEeecccceEEEEEEEEeCEEecCC
Confidence 589999999999999999999999753221 1 1111110 111 12344566667777777766543
No 163
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.72 E-value=7.4e-18 Score=175.00 Aligned_cols=114 Identities=19% Similarity=0.213 Sum_probs=84.8
Q ss_pred eeE-EEecCCCChHHHHHHHhCCccee---------------eecCC------CceEEEEEEEEeCCCeeEEEEeCCCCc
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSI---------------VTNKP------QTTRHRILGICSGPEYQMILYDTPGII 170 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~---------------v~~~~------~tt~~~~~~~~~~~~~~i~liDtpG~~ 170 (409)
+.+ |+||+++|||||..+|+.....+ +++.- |.|.......+.+++..|+|+||||+.
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 344 99999999999999997322111 11111 111111223467889999999999976
Q ss_pred hhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCCh
Q 015293 171 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 237 (409)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~ 237 (409)
+ |...+..+++-+|.+|+|||+..+.+.+++.+++.+.. .+.|.++++||+|+...
T Consensus 112 D---------F~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~--~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 112 D---------FSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM--RATPVMTFVNKMDREAL 167 (548)
T ss_dssp G---------CSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCCEEEEEECTTSCCC
T ss_pred H---------HHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH--hCCceEEEEecccchhc
Confidence 5 33456677899999999999999999999999988877 89999999999999753
No 164
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.70 E-value=1.1e-16 Score=162.01 Aligned_cols=143 Identities=24% Similarity=0.251 Sum_probs=95.1
Q ss_pred EEecCCCChHHHHHHHhCCccee----------eecCCCc----------------------eEEEEEEEEeCCCeeEEE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI----------VTNKPQT----------------------TRHRILGICSGPEYQMIL 163 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~----------v~~~~~t----------------------t~~~~~~~~~~~~~~i~l 163 (409)
++|++|+|||||+|+|++....+ .+..++| |.+.....+..++..+.|
T Consensus 29 iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~~~~i 108 (434)
T 1zun_B 29 TCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFII 108 (434)
T ss_dssp EECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSEEEEE
T ss_pred EEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCceEEE
Confidence 99999999999999998654221 1122233 333334456667789999
Q ss_pred EeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCC-CEEEEEecCCCCCh--hhH
Q 015293 164 YDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-PILLVLNKKDLIKP--GEI 240 (409)
Q Consensus 164 iDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~-p~ilvlNK~Dl~~~--~~~ 240 (409)
|||||+. .+ ...+..++..+|++|+|+|++++...+....+..+.. .+. |+++|+||+|+... ...
T Consensus 109 iDtpGh~--~f-------~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~--~~~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 109 ADTPGHE--QY-------TRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL--LGIKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp EECCCSG--GG-------HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEEECTTTTTSCHHHH
T ss_pred EECCChH--HH-------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEEcCcCCcccHHHH
Confidence 9999953 32 2233445789999999999999887666655555444 344 69999999999862 222
Q ss_pred HH----HHHHHHhcC---CCceEEEcccCCCCCHHH
Q 015293 241 AK----KLEWYEKFT---DVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 241 ~~----~~~~~~~~~---~~~~iv~iSA~~g~gi~~ 269 (409)
.. ....+.... ...+++++||++|.|+++
T Consensus 178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 21 222222222 225799999999999987
No 165
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.70 E-value=5.3e-18 Score=167.32 Aligned_cols=178 Identities=19% Similarity=0.234 Sum_probs=112.5
Q ss_pred EEecCCCChHHHHHHHh------CCcceeeecCCCceEEE-------E----------EEE-------------------
Q 015293 116 VLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHR-------I----------LGI------------------- 153 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~------~~~~~~v~~~~~tt~~~-------~----------~~~------------------- 153 (409)
|+|.||+|||||+++|. |.++..+...|+++... . ..+
T Consensus 84 i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~d~ 163 (355)
T 3p32_A 84 ITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRATRET 163 (355)
T ss_dssp EECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchhHHHHHH
Confidence 99999999999999986 55555555555544310 0 000
Q ss_pred ---EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEe
Q 015293 154 ---CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 230 (409)
Q Consensus 154 ---~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlN 230 (409)
+...+..++||||||+.+.. . ..+..+|++++|+|+....... . +.......|.++|+|
T Consensus 164 i~~~~~~~~~~iiiDTpGi~~~~-~-----------~~~~~aD~vl~V~d~~~~~~~~--~----l~~~~~~~p~ivVlN 225 (355)
T 3p32_A 164 VVLLEAAGFDVILIETVGVGQSE-V-----------AVANMVDTFVLLTLARTGDQLQ--G----IKKGVLELADIVVVN 225 (355)
T ss_dssp HHHHHHTTCCEEEEEECSCSSHH-H-----------HHHTTCSEEEEEEESSTTCTTT--T----CCTTSGGGCSEEEEE
T ss_pred HHHHhhCCCCEEEEeCCCCCcHH-H-----------HHHHhCCEEEEEECCCCCccHH--H----HHHhHhhcCCEEEEE
Confidence 12356789999999975421 1 1247899999999987543221 1 111013469999999
Q ss_pred cCCCCChhhHHHHHHHHHh----cC----C-CceEEEcccCCCCCHHHHHHHHHhhCCC--CCCCCCCccccCchHHHHH
Q 015293 231 KKDLIKPGEIAKKLEWYEK----FT----D-VDEVIPVSAKYGHGVEDIRDWILTKLPL--GPAYYPKDIVSEHPERFFV 299 (409)
Q Consensus 231 K~Dl~~~~~~~~~~~~~~~----~~----~-~~~iv~iSA~~g~gi~~L~~~L~~~l~~--~~~~~~~~~~t~~~~r~~i 299 (409)
|+|+............+.. .. . ..+++++||++|.|+++|+++|.+.++. .+..++. ... ...++++
T Consensus 226 K~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~~~~~~~~~-~r~-~~~~~~~ 303 (355)
T 3p32_A 226 KADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVLTGAGEFDA-RRR-DQQVDWT 303 (355)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHHHHTTHHHH-HHH-HHHHHHH
T ss_pred CCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHhhcCchHHH-HHH-HHHHHHH
Confidence 9999765443322222221 11 1 2479999999999999999999988754 2222222 111 2356678
Q ss_pred HHHHHHHHHhhcCC
Q 015293 300 GEIIREKIFMQYRN 313 (409)
Q Consensus 300 ~EiiRe~i~~~~~~ 313 (409)
.+++|++++..+.+
T Consensus 304 ~e~i~e~l~~~~~~ 317 (355)
T 3p32_A 304 WQLVRDAVLDRVWS 317 (355)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 89999999887654
No 166
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.69 E-value=2.2e-16 Score=168.52 Aligned_cols=110 Identities=16% Similarity=0.140 Sum_probs=79.3
Q ss_pred EEecCCCChHHHHHHHhCCcce-----------eeec------CCCceEEEEEEEEeCCC-------eeEEEEeCCCCch
Q 015293 116 VLGKPNVGKSTLANQMIGQKLS-----------IVTN------KPQTTRHRILGICSGPE-------YQMILYDTPGIIE 171 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~-----------~v~~------~~~tt~~~~~~~~~~~~-------~~i~liDtpG~~~ 171 (409)
|+|++|+|||||+++|+..... .+.+ ..+.|.......+.+.+ ..++||||||+.+
T Consensus 15 IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~d 94 (704)
T 2rdo_7 15 ISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVD 94 (704)
T ss_pred EECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCCCccc
Confidence 9999999999999999753211 0111 23344444444455555 8899999999643
Q ss_pred hhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 172 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
|...+..++..+|++|+|+|++.+...+...++..+.. .+.|+++|+||+|+..
T Consensus 95 ---------f~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~--~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 95 ---------FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANK--YKVPRIAFVNKMDRMG 148 (704)
T ss_pred ---------hHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHH--cCCCEEEEEeCCCccc
Confidence 22345566788999999999999887776666665554 6799999999999865
No 167
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.69 E-value=2.8e-16 Score=162.51 Aligned_cols=111 Identities=22% Similarity=0.276 Sum_probs=79.4
Q ss_pred EEecCCCChHHHHHHHhCCccee---------------eec------CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI---------------VTN------KPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 174 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~---------------v~~------~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~ 174 (409)
++|++|+|||||+++|++....+ +++ ..+.|.......+.+++..+.||||||+.+ +
T Consensus 18 IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~d--f 95 (529)
T 2h5e_A 18 IISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHED--F 95 (529)
T ss_dssp EEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCSTT--C
T ss_pred EECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCChh--H
Confidence 99999999999999998643211 111 122222222334566789999999999633 2
Q ss_pred hhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCCh
Q 015293 175 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 237 (409)
Q Consensus 175 ~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~ 237 (409)
. ..+..++..+|++|+|+|++++...+...++..+.. .+.|+++|+||+|+...
T Consensus 96 ~-------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~--~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 96 S-------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL--RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp C-------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT--TTCCEEEEEECTTSCCS
T ss_pred H-------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHH--cCCCEEEEEcCcCCccc
Confidence 2 334566889999999999999888877777777665 68999999999999754
No 168
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.69 E-value=5.8e-17 Score=160.14 Aligned_cols=117 Identities=24% Similarity=0.326 Sum_probs=85.5
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCc
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 192 (409)
.+ |||.||||||||+|+|++.+ +.++++|+||+++..+.+.+.+.++.|+||||+...+.. ...+...+...++.|
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~--~~~~g~~~l~~i~~a 150 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKD--GRGRGKQVIAVARTC 150 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-------CHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchh--hhHHHHHHHHHHHhc
Confidence 34 99999999999999999987 457999999999999999999999999999999754322 112235566778899
Q ss_pred ceEEEEeeCCCCCChHHHHHHHHhccC---CCCCCEEEEEecCCC
Q 015293 193 DCIVVLVDACKAPERIDEILEEGVGDH---KDKLPILLVLNKKDL 234 (409)
Q Consensus 193 DvillVvD~~~~~~~~~~~l~~~l~~~---~~~~p~ilvlNK~Dl 234 (409)
|++++|+|++++..... .+...+... -.++|.++++||+|.
T Consensus 151 d~il~vvD~~~p~~~~~-~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 151 NLLFIILDVNKPLHHKQ-IIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp SEEEEEEETTSHHHHHH-HHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred CccccccccCccHHHHH-HHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 99999999987643322 111111110 135667777777775
No 169
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.68 E-value=1e-16 Score=162.27 Aligned_cols=143 Identities=21% Similarity=0.284 Sum_probs=92.1
Q ss_pred EEecCCCChHHHHHHHhCCccee------------------------e------ecCCCceEEEEEEEEeCCCeeEEEEe
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI------------------------V------TNKPQTTRHRILGICSGPEYQMILYD 165 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~------------------------v------~~~~~tt~~~~~~~~~~~~~~i~liD 165 (409)
++|++|+|||||+++|++..... + ....++|.+.....+...+..+.|||
T Consensus 11 iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~~iiD 90 (435)
T 1jny_A 11 VIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIID 90 (435)
T ss_dssp EEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEEEECC
T ss_pred EEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeEEEEEE
Confidence 99999999999999998642110 0 11456777766666778889999999
Q ss_pred CCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCC-------CChHHHHHHHHhccCCCC-CCEEEEEecCCCCCh
Q 015293 166 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDK-LPILLVLNKKDLIKP 237 (409)
Q Consensus 166 tpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~-------~~~~~~~l~~~l~~~~~~-~p~ilvlNK~Dl~~~ 237 (409)
|||+.+ +...+..++..+|++|+|+|++++ ...+....+..+.. .+ .|+++|+||+|+...
T Consensus 91 tpG~~~---------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~--~~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 91 APGHRD---------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT--MGLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp CSSSTT---------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH--TTCTTCEEEEECGGGSSS
T ss_pred CCCcHH---------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEEcccCCCc
Confidence 999543 234456678999999999999986 44455555444443 34 469999999999862
Q ss_pred ----hhHH----HHHHHHHhcC---CCceEEEcccCCCCCHHH
Q 015293 238 ----GEIA----KKLEWYEKFT---DVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 238 ----~~~~----~~~~~~~~~~---~~~~iv~iSA~~g~gi~~ 269 (409)
.... +....+.... ...+++++||++|.|+.+
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence 1111 2222222221 125799999999999973
No 170
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.68 E-value=4.5e-17 Score=170.37 Aligned_cols=151 Identities=21% Similarity=0.263 Sum_probs=102.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCC-CceEEEEEEEEe------------------CCCeeEEEEeCCCCchhhhhh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILGICS------------------GPEYQMILYDTPGIIEKKIHM 176 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~-~tt~~~~~~~~~------------------~~~~~i~liDtpG~~~~~~~~ 176 (409)
++|++|+|||||+++|++..+.. ..+ +.|.+.....+. .....+.||||||+ ..+..
T Consensus 10 IvGh~d~GKTTLl~~L~~~~v~~--~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGh--e~F~~ 85 (594)
T 1g7s_A 10 VLGHVDHGKTTLLDHIRGSAVAS--REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGH--EAFTT 85 (594)
T ss_dssp EECSTTSSHHHHHHHHHHHHHSC--C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTT--SCCTT
T ss_pred EECCCCCcHHHHHHHHhcccCcc--ccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCc--HHHHH
Confidence 99999999999999999875532 111 233221111111 11236999999995 34433
Q ss_pred HhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChh-----------------h
Q 015293 177 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG-----------------E 239 (409)
Q Consensus 177 l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~-----------------~ 239 (409)
+. ..++..||++|+|+|++++...++...+..++. .+.|+++|+||+|+.... .
T Consensus 86 ~~-------~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 86 LR-------KRGGALADLAILIVDINEGFKPQTQEALNILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp SB-------CSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HH-------HHHHhhCCEEEEEEECCCCccHhHHHHHHHHHH--cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 32 234678999999999999888777777776665 689999999999996421 1
Q ss_pred HH--------HHHHHHHhc-------------CCCceEEEcccCCCCCHHHHHHHHHhhCC
Q 015293 240 IA--------KKLEWYEKF-------------TDVDEVIPVSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 240 ~~--------~~~~~~~~~-------------~~~~~iv~iSA~~g~gi~~L~~~L~~~l~ 279 (409)
+. .....+... ....+++++||++|.|+++|+++|...++
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 10 111111111 23458999999999999999999987664
No 171
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.68 E-value=2e-16 Score=168.67 Aligned_cols=111 Identities=18% Similarity=0.211 Sum_probs=77.8
Q ss_pred EEecCCCChHHHHHHHhCCcce-----e------eec------CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLS-----I------VTN------KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLD 178 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~-----~------v~~------~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~ 178 (409)
|+|++|+|||||+|+|+..... . +.+ ..+.|.......+.+.+..++||||||+.+
T Consensus 17 IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d------- 89 (691)
T 1dar_A 17 IAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD------- 89 (691)
T ss_dssp EEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT-------
T ss_pred EECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc-------
Confidence 9999999999999999832111 0 111 234444444455667789999999999643
Q ss_pred HHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCCh
Q 015293 179 SMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 237 (409)
Q Consensus 179 ~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~ 237 (409)
+...+..++..+|++|+|+|++++...+...++..+.. .+.|+++|+||+|+...
T Consensus 90 --f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~--~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 --FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK--YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp --CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECTTSTTC
T ss_pred --hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH--cCCCEEEEEECCCcccC
Confidence 22334556788999999999999887777666665555 68999999999999753
No 172
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.68 E-value=6.6e-17 Score=172.46 Aligned_cols=159 Identities=21% Similarity=0.215 Sum_probs=107.6
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCc--------------eEEEEEE----E---------EeCCC------
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQT--------------TRHRILG----I---------CSGPE------ 158 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~t--------------t~~~~~~----~---------~~~~~------ 158 (409)
..+ |+|.+|+|||||+|+|+|.++.+++..|+| |++...+ . +...+
T Consensus 70 ~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~l 149 (695)
T 2j69_A 70 FRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKL 149 (695)
T ss_dssp EEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHHH
Confidence 344 999999999999999999998888888877 3321000 0 00011
Q ss_pred ------------------------eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHH-
Q 015293 159 ------------------------YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILE- 213 (409)
Q Consensus 159 ------------------------~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~- 213 (409)
..+.||||||+.... . +...+..++..||++|+|+|++++....+..++
T Consensus 150 ~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~-~-----~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~ 223 (695)
T 2j69_A 150 EQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE-A-----RNELSLGYVNNCHAILFVMRASQPCTLGERRYLE 223 (695)
T ss_dssp HTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH-T-----CHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHH
T ss_pred hhccccccccceEEEEEccchhccCCeEEEECCCCCchh-h-----HHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHH
Confidence 369999999975421 1 234456678899999999999887755544333
Q ss_pred HHhccCCCCCCEEEEEecCCCCChh--------hHHH----HH----HHHHhcC-------CCceEEEcccC--------
Q 015293 214 EGVGDHKDKLPILLVLNKKDLIKPG--------EIAK----KL----EWYEKFT-------DVDEVIPVSAK-------- 262 (409)
Q Consensus 214 ~~l~~~~~~~p~ilvlNK~Dl~~~~--------~~~~----~~----~~~~~~~-------~~~~iv~iSA~-------- 262 (409)
+.+.. .+.|+++|+||+|+.... .+.. .. ..+.... ...++++|||+
T Consensus 224 ~~l~~--~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~ 301 (695)
T 2j69_A 224 NYIKG--RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK 301 (695)
T ss_dssp HHTTT--SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred HHHHh--hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence 34444 468999999999986442 1111 11 1122111 12368999999
Q ss_pred ------CCCCHHHHHHHHHhhCC
Q 015293 263 ------YGHGVEDIRDWILTKLP 279 (409)
Q Consensus 263 ------~g~gi~~L~~~L~~~l~ 279 (409)
+|.|+++|++.|.+.+.
T Consensus 302 ~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 302 NPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp CTTCCCTTSSHHHHHHHHHHHHH
T ss_pred CchhhhhccCHHHHHHHHHHHHH
Confidence 99999999999987663
No 173
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.67 E-value=3.3e-17 Score=160.71 Aligned_cols=178 Identities=20% Similarity=0.304 Sum_probs=112.0
Q ss_pred EEecCCCChHHHHHHHh------CCcceeeecCCCceEEE--------------------EEEE----------------
Q 015293 116 VLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHR--------------------ILGI---------------- 153 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~------~~~~~~v~~~~~tt~~~--------------------~~~~---------------- 153 (409)
++|+||+|||||+|.|. +.++.++...+++|... +...
T Consensus 61 i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~~~~~~~ 140 (341)
T 2p67_A 61 VTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRAREL 140 (341)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhHHHHHHH
Confidence 99999999999999996 56666677666655410 0000
Q ss_pred ---EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEe
Q 015293 154 ---CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 230 (409)
Q Consensus 154 ---~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlN 230 (409)
+..++.+++|+||||+.+.. . .....+|++++|+|++.+... +.+.....+.|.++|+|
T Consensus 141 ~~~~~~~~~~i~liDTpG~~~~~-~-----------~~~~~aD~vl~Vvd~~~~~~~------~~l~~~~~~~p~ivv~N 202 (341)
T 2p67_A 141 MLLCEAAGYDVVIVETVGVGQSE-T-----------EVARMVDCFISLQIAGGGDDL------QGIKKGLMEVADLIVIN 202 (341)
T ss_dssp HHHHHHTTCSEEEEEEECCTTHH-H-----------HHHTTCSEEEEEECC------------CCCCHHHHHHCSEEEEC
T ss_pred HHHhhccCCCEEEEeCCCccchH-H-----------HHHHhCCEEEEEEeCCccHHH------HHHHHhhhcccCEEEEE
Confidence 01456789999999986421 1 124799999999999754210 11110002468899999
Q ss_pred cCCCCChhhHHHHHHHHH----hcCC-----CceEEEcccCCCCCHHHHHHHHHhhCC---CCCCCCCCccccCchHHHH
Q 015293 231 KKDLIKPGEIAKKLEWYE----KFTD-----VDEVIPVSAKYGHGVEDIRDWILTKLP---LGPAYYPKDIVSEHPERFF 298 (409)
Q Consensus 231 K~Dl~~~~~~~~~~~~~~----~~~~-----~~~iv~iSA~~g~gi~~L~~~L~~~l~---~~~~~~~~~~~t~~~~r~~ 298 (409)
|+|+............+. .... ..+++++||++|.|+++|+++|.+.++ +++ .+| .... ...++.
T Consensus 203 K~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~~~~~-~~~-~~r~-~~~~~~ 279 (341)
T 2p67_A 203 KDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASG-RLQ-QVRQ-QQSVEW 279 (341)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHHTT-HHH-HHHH-HHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHHHhCC-hHH-HHHH-HHHHHH
Confidence 999987544332222221 1111 347899999999999999999988764 221 222 1112 225667
Q ss_pred HHHHHHHHHHhhcCCC
Q 015293 299 VGEIIREKIFMQYRNE 314 (409)
Q Consensus 299 i~EiiRe~i~~~~~~e 314 (409)
+.|.+++.++..+.++
T Consensus 280 ~~e~i~e~l~~~~~~~ 295 (341)
T 2p67_A 280 LRKQTEEEVLNHLFAN 295 (341)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 8889999999888765
No 174
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.67 E-value=7.2e-17 Score=167.61 Aligned_cols=157 Identities=18% Similarity=0.226 Sum_probs=95.0
Q ss_pred eE-EEecCCCChHHHHHHHhCCccee-eecCCCceEEEEEE----EEe----CCCeeEEEEeCCCCchhhhhhHhHHHHH
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILG----ICS----GPEYQMILYDTPGIIEKKIHMLDSMMMK 183 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~-v~~~~~tt~~~~~~----~~~----~~~~~i~liDtpG~~~~~~~~l~~~~~~ 183 (409)
++ ++|.||||||||+|+|++..+.. ..++.+.+...... .+. ..+..+.+||||| ++.+..+...+
T Consensus 43 kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G--~e~~~~~~~~~-- 118 (535)
T 3dpu_A 43 KVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGG--QEIMHASHQFF-- 118 (535)
T ss_dssp EEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCS--CCTTTTTCHHH--
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCc--HHHHHHHHHHH--
Confidence 44 99999999999999999987531 11222222211100 111 2357899999999 44444444433
Q ss_pred HHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEccc
Q 015293 184 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSA 261 (409)
Q Consensus 184 ~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA 261 (409)
+..+|++|+|+|+++. ..... +...+.....+.|+++|+||+|+..... ........... + .+++++||
T Consensus 119 -----l~~~d~ii~V~D~s~~-~~~~~-~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~~vSA 189 (535)
T 3dpu_A 119 -----MTRSSVYMLLLDSRTD-SNKHY-WLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAI-E-NRFHRISC 189 (535)
T ss_dssp -----HHSSEEEEEEECGGGG-GGHHH-HHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGG-T-TCEEECCC
T ss_pred -----ccCCcEEEEEEeCCCc-hhHHH-HHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhc-C-CceEEEec
Confidence 5679999999999865 33333 3333443335699999999999975432 22222333222 2 36999999
Q ss_pred CCCCCHHHHHHHHHhhCCCCCC
Q 015293 262 KYGHGVEDIRDWILTKLPLGPA 283 (409)
Q Consensus 262 ~~g~gi~~L~~~L~~~l~~~~~ 283 (409)
++|.|+++|++.|.+.+...+.
T Consensus 190 ~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 190 KNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp -----CTTHHHHHHHHHTCTTS
T ss_pred CcccCHHHHHHHHHHHHhcccc
Confidence 9999999999999998876554
No 175
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.66 E-value=4.3e-16 Score=170.48 Aligned_cols=154 Identities=18% Similarity=0.212 Sum_probs=104.5
Q ss_pred EEecCCCChHHHHHHHhCCcc----------e-----eeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHH
Q 015293 116 VLGKPNVGKSTLANQMIGQKL----------S-----IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSM 180 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~----------~-----~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~ 180 (409)
++|++|+|||||+++|++... . ......|.|.+.....+..++..+.||||||+ ..
T Consensus 301 IIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGH--ed------- 371 (1289)
T 3avx_A 301 TIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGH--AD------- 371 (1289)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCH--HH-------
T ss_pred EEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCCh--HH-------
Confidence 999999999999999987411 0 00123344444333345667789999999994 33
Q ss_pred HHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCC-EEEEEecCCCCChhh-HH----HHHHHHHhcC---
Q 015293 181 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGE-IA----KKLEWYEKFT--- 251 (409)
Q Consensus 181 ~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilvlNK~Dl~~~~~-~~----~~~~~~~~~~--- 251 (409)
+...+...+..+|++|+|+|++++...++..++..+.. .+.| +|+|+||+|+....+ .. +....+....
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~--lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~ 449 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ--VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG 449 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH--HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH--cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccc
Confidence 34456667899999999999999876666655555554 5678 789999999985322 11 1222232221
Q ss_pred CCceEEEcccCCC--------CCHHHHHHHHHhhCCC
Q 015293 252 DVDEVIPVSAKYG--------HGVEDIRDWILTKLPL 280 (409)
Q Consensus 252 ~~~~iv~iSA~~g--------~gi~~L~~~L~~~l~~ 280 (409)
...+++++||++| .|+.+|++.|.+.++.
T Consensus 450 ~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 450 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp TTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred cceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 2358999999999 5799999999998864
No 176
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.65 E-value=4.6e-16 Score=165.93 Aligned_cols=111 Identities=18% Similarity=0.191 Sum_probs=78.9
Q ss_pred EEecCCCChHHHHHHHhCCccee-----------eec------CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLD 178 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-----------v~~------~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~ 178 (409)
|+|++|+|||||+|+|++....+ +++ .+++|.......+.+++.+++||||||+.+ +
T Consensus 15 IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d--f---- 88 (693)
T 2xex_A 15 IMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD--F---- 88 (693)
T ss_dssp EECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS--C----
T ss_pred EECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc--h----
Confidence 99999999999999998522111 111 234454444555677789999999999743 2
Q ss_pred HHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCCh
Q 015293 179 SMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 237 (409)
Q Consensus 179 ~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~ 237 (409)
...+..++..+|++|+|+|++++....+..++..+.. .+.|+++|+||+|+...
T Consensus 89 ---~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~--~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 89 ---TVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATT--YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp ---CHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCCEEEEEECTTSTTC
T ss_pred ---HHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHH--cCCCEEEEEECCCcccc
Confidence 1234455778999999999999887777666666655 68999999999999753
No 177
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.64 E-value=1e-15 Score=137.86 Aligned_cols=151 Identities=21% Similarity=0.221 Sum_probs=95.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
++|++|||||||+++|.+..+.... .+..+.+...+.+..++ ..+.+|||||. ..+..+.. .++..+|
T Consensus 10 lvG~~g~GKSTLl~~l~~~~~~~~~-~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~--~~~~~~~~-------~~~~~~~ 79 (199)
T 2f9l_A 10 LIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDGKTIKAQIWDTAGQ--ERYRRITS-------AYYRGAV 79 (199)
T ss_dssp EESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSG--GGTTCCCH-------HHHTTCS
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCC-CCccceeEEEEEEEECCEEEEEEEEECCCc--hhhhhhhH-------HHHhcCC
Confidence 9999999999999999998765332 22222233334444444 46788999994 33333322 2356899
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~--~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
++++|+|+++... ....++.........+.|+++|+||+|+..... ......... ..+ ..++.+||+++.|+++
T Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~-~~~-~~~~d~Sal~~~~i~~ 157 (199)
T 2f9l_A 80 GALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE-KNN-LSFIETSALDSTNVEE 157 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-HTT-CEEEECCTTTCTTHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHH-HcC-CeEEEEeCCCCCCHHH
Confidence 9999999976532 112222222111125689999999999964221 122222222 233 3688899999999999
Q ss_pred HHHHHHhhC
Q 015293 270 IRDWILTKL 278 (409)
Q Consensus 270 L~~~L~~~l 278 (409)
++++|.+.+
T Consensus 158 l~~~l~~~~ 166 (199)
T 2f9l_A 158 AFKNILTEI 166 (199)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
No 178
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.63 E-value=2.3e-15 Score=159.84 Aligned_cols=109 Identities=23% Similarity=0.184 Sum_probs=80.5
Q ss_pred EEecCCCChHHHHHHHhCCccee-----------eec------CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLD 178 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-----------v~~------~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~ 178 (409)
|+|++|+|||||+++|++..... +.+ ..+.|.......+.+.+..++||||||+.+ +
T Consensus 14 IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~--f---- 87 (665)
T 2dy1_A 14 LVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD--F---- 87 (665)
T ss_dssp EEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG--G----
T ss_pred EECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc--h----
Confidence 99999999999999998432210 001 123344444445566788999999999543 2
Q ss_pred HHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCC
Q 015293 179 SMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 235 (409)
Q Consensus 179 ~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~ 235 (409)
...+..++..+|++++|+|++++...+...++..+.. .+.|+++|+||+|+.
T Consensus 88 ---~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 ---VGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp ---HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECGGGC
T ss_pred ---HHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHH--ccCCEEEEecCCchh
Confidence 2335566788999999999999888877777776665 689999999999987
No 179
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.62 E-value=9.8e-16 Score=156.41 Aligned_cols=145 Identities=20% Similarity=0.189 Sum_probs=85.7
Q ss_pred EEecCCCChHHHHHHHhCCcc------------------------eeeec------CCCceEEEEEEEEeCCCeeEEEEe
Q 015293 116 VLGKPNVGKSTLANQMIGQKL------------------------SIVTN------KPQTTRHRILGICSGPEYQMILYD 165 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~------------------------~~v~~------~~~tt~~~~~~~~~~~~~~i~liD 165 (409)
++|++|+|||||+++|++... +.+.+ ..+.|.+.....+..++..+.|||
T Consensus 48 iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~~iiD 127 (467)
T 1r5b_A 48 FIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLD 127 (467)
T ss_dssp EEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEEEECC
T ss_pred EEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeEEEEEE
Confidence 999999999999999974211 11111 235565555556677789999999
Q ss_pred CCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCC-------ChHHHHHHHHhccCCCCCC-EEEEEecCCCCCh
Q 015293 166 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKP 237 (409)
Q Consensus 166 tpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~-------~~~~~~l~~~l~~~~~~~p-~ilvlNK~Dl~~~ 237 (409)
|||+. . +...+...+..+|++|+|+|++++. ..+....+..+.. .+.| +|+|+||+|+...
T Consensus 128 tPGh~--~-------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~~ 196 (467)
T 1r5b_A 128 APGHK--G-------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKMDEPSV 196 (467)
T ss_dssp CCC--------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECTTSTTC
T ss_pred CCCcH--H-------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECccCCCc
Confidence 99953 2 2344556678999999999999873 1233333333333 5677 9999999999641
Q ss_pred ----hhHH----HHHHHHHhc-C-C---CceEEEcccCCCCCHHHHH
Q 015293 238 ----GEIA----KKLEWYEKF-T-D---VDEVIPVSAKYGHGVEDIR 271 (409)
Q Consensus 238 ----~~~~----~~~~~~~~~-~-~---~~~iv~iSA~~g~gi~~L~ 271 (409)
.... +....+... . . ..+++++||++|.|+.+++
T Consensus 197 ~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 197 QWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1111 122223222 1 1 2479999999999998754
No 180
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=143.57 Aligned_cols=87 Identities=17% Similarity=0.114 Sum_probs=59.3
Q ss_pred CcceEEEEeeCCCC--C--ChHHHHHHHHhcc-CCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCC
Q 015293 191 NADCIVVLVDACKA--P--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 265 (409)
Q Consensus 191 ~aDvillVvD~~~~--~--~~~~~~l~~~l~~-~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~ 265 (409)
.||++|+|+|++++ . .....++...... ...+.|+++|+||+|+.....+.....+..... ..+++++||++|.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~-~~~~~e~SAk~g~ 240 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKK-NLQVVETSARSNV 240 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSS-SCCEEECBTTTTB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcC-CCeEEEEECCCCC
Confidence 69999999999875 3 2233333333221 115799999999999976655543333332222 3479999999999
Q ss_pred CHHHHHHHHHhhC
Q 015293 266 GVEDIRDWILTKL 278 (409)
Q Consensus 266 gi~~L~~~L~~~l 278 (409)
|+++++++|.+.+
T Consensus 241 gv~elf~~l~~~l 253 (255)
T 3c5h_A 241 NVDLAFSTLVQLI 253 (255)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998754
No 181
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.61 E-value=3e-15 Score=150.06 Aligned_cols=159 Identities=26% Similarity=0.345 Sum_probs=110.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC-eeEEEEeCCCCchhh--hhhHhHHHHHHHHHhhcCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKK--IHMLDSMMMKNVRSAGINA 192 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~-~~i~liDtpG~~~~~--~~~l~~~~~~~~~~~~~~a 192 (409)
|+|+||||||||+++|.+... .+..++.+|..+..+.+..++ ..+.++||||+.... ...+...+ ...+..+
T Consensus 162 LVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~f----l~~~era 236 (416)
T 1udx_A 162 LVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEF----LRHIART 236 (416)
T ss_dssp EECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHH----HHHHTSS
T ss_pred EECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHH----HHHHHHH
Confidence 999999999999999999865 367888888887777777765 789999999985421 11222222 2335789
Q ss_pred ceEEEEeeCC-CCCChHHHHHHHHhccCC---CCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 193 DCIVVLVDAC-KAPERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 193 DvillVvD~~-~~~~~~~~~l~~~l~~~~---~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
+.+++|+|++ ++....... ...+..+. ...|.++|+||+|+.....+..+...+... + .+++++||++++|++
T Consensus 237 ~~lL~vvDls~~~~~~ls~g-~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~-g-~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 237 RVLLYVLDAADEPLKTLETL-RKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALARE-G-LAVLPVSALTGAGLP 313 (416)
T ss_dssp SEEEEEEETTSCHHHHHHHH-HHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTT-T-SCEEECCTTTCTTHH
T ss_pred HhhhEEeCCccCCHHHHHHH-HHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhc-C-CeEEEEECCCccCHH
Confidence 9999999997 211111111 11111110 358999999999998763333333333322 2 378999999999999
Q ss_pred HHHHHHHhhCCCCC
Q 015293 269 DIRDWILTKLPLGP 282 (409)
Q Consensus 269 ~L~~~L~~~l~~~~ 282 (409)
+|+++|.+.+...+
T Consensus 314 eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 314 ALKEALHALVRSTP 327 (416)
T ss_dssp HHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999886543
No 182
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.60 E-value=1.8e-16 Score=155.17 Aligned_cols=179 Identities=21% Similarity=0.298 Sum_probs=111.1
Q ss_pred EEecCCCChHHHHHHHh------CCcceeeecCCCceEE-----------------EEEEE-------------------
Q 015293 116 VLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRH-----------------RILGI------------------- 153 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~------~~~~~~v~~~~~tt~~-----------------~~~~~------------------- 153 (409)
|+|+||+|||||+|.|. +.++.+++..+.+++. .....
T Consensus 60 i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~ 139 (337)
T 2qm8_A 60 ITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRET 139 (337)
T ss_dssp EECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchHHHHHHH
Confidence 99999999999999998 5566555544443321 00000
Q ss_pred ---EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEe
Q 015293 154 ---CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 230 (409)
Q Consensus 154 ---~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlN 230 (409)
+...+.+++|+||||+.+.. . .....+|++++|+|+..+... +.+.......|.++++|
T Consensus 140 ~~~~~~~~~~~iliDT~Gi~~~~-~-----------~v~~~~d~vl~v~d~~~~~~~------~~i~~~i~~~~~ivvlN 201 (337)
T 2qm8_A 140 MLLCEAAGFDVILVETVGVGQSE-T-----------AVADLTDFFLVLMLPGAGDEL------QGIKKGIFELADMIAVN 201 (337)
T ss_dssp HHHHHHTTCCEEEEEECSSSSCH-H-----------HHHTTSSEEEEEECSCC------------CCTTHHHHCSEEEEE
T ss_pred HHHHhcCCCCEEEEECCCCCcch-h-----------hHHhhCCEEEEEEcCCCcccH------HHHHHHHhccccEEEEE
Confidence 22357899999999986521 1 113689999999998643210 10111001346688889
Q ss_pred cCCCCChhh-HHHHHHHHH----hcC----C-CceEEEcccCCCCCHHHHHHHHHhhCC---CCCCCCCCccccCchHHH
Q 015293 231 KKDLIKPGE-IAKKLEWYE----KFT----D-VDEVIPVSAKYGHGVEDIRDWILTKLP---LGPAYYPKDIVSEHPERF 297 (409)
Q Consensus 231 K~Dl~~~~~-~~~~~~~~~----~~~----~-~~~iv~iSA~~g~gi~~L~~~L~~~l~---~~~~~~~~~~~t~~~~r~ 297 (409)
|+|+..... .......+. ... . ..+++++||++|.|+++|++.|.+..+ ++++ + ....+. ..++
T Consensus 202 K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~~~~~~~~-~-~~~r~~-~~~~ 278 (337)
T 2qm8_A 202 KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTATGE-I-AGKRRE-QDVK 278 (337)
T ss_dssp CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTH-H-HHHHHH-HHHH
T ss_pred chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHhCcH-H-HHHHHH-HHHH
Confidence 999764322 111111111 111 1 347899999999999999999988764 2222 2 122232 3366
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 015293 298 FVGEIIREKIFMQYRNEV 315 (409)
Q Consensus 298 ~i~EiiRe~i~~~~~~ei 315 (409)
++.+++|++++..++++.
T Consensus 279 ~~~~~i~~~~~~~~~~~~ 296 (337)
T 2qm8_A 279 WMWALVHERLHQRLVGSA 296 (337)
T ss_dssp HHHHHHHHHHHHHHTSSH
T ss_pred HHHHHHHHHHHHHHHhCc
Confidence 789999999999888754
No 183
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.60 E-value=4.6e-15 Score=140.51 Aligned_cols=121 Identities=20% Similarity=0.360 Sum_probs=86.0
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHh--hcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA--GINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~--~~~aD 193 (409)
++|.+|+|||||+|+|++..+..+++.+++|.+.....+..++..+.+|||||+.. +..+.....+.+..+ ...+|
T Consensus 44 vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~--~~~~~~~~~~~i~~~~~~~~~d 121 (270)
T 1h65_A 44 VMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE--GGYINDMALNIIKSFLLDKTID 121 (270)
T ss_dssp EEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEE--TTEECHHHHHHHHHHTTTCEEC
T ss_pred EECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCC--CccchHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999877888888888777777777889999999999754 222222222333322 34799
Q ss_pred eEEEEeeCCC-CCChHHHHHHHHhccC-CCC--CCEEEEEecCCCCChh
Q 015293 194 CIVVLVDACK-APERIDEILEEGVGDH-KDK--LPILLVLNKKDLIKPG 238 (409)
Q Consensus 194 villVvD~~~-~~~~~~~~l~~~l~~~-~~~--~p~ilvlNK~Dl~~~~ 238 (409)
+++||+|++. .....+..+...+... ..+ .|+++|+||+|+.++.
T Consensus 122 ~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 122 VLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp EEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred EEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 9999988754 2344443444433321 122 6999999999997643
No 184
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.59 E-value=4.2e-16 Score=164.79 Aligned_cols=156 Identities=21% Similarity=0.217 Sum_probs=113.0
Q ss_pred EEEecCCCChHHHHHHHhCCccee-----e------ecCC------CceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhH
Q 015293 115 SVLGKPNVGKSTLANQMIGQKLSI-----V------TNKP------QTTRHRILGICSGPEYQMILYDTPGIIEKKIHML 177 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~~~~~~-----v------~~~~------~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l 177 (409)
.|+||.++|||||..+|+.....+ + ++.- |.|.......+.+++..|+|+||||+.+
T Consensus 6 ~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~D------ 79 (638)
T 3j25_A 6 GVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMD------ 79 (638)
T ss_dssp EEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSS------
T ss_pred EEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHH------
Confidence 399999999999999997322111 1 1111 2222223334678889999999999765
Q ss_pred hHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhH---HHHHH---------
Q 015293 178 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI---AKKLE--------- 245 (409)
Q Consensus 178 ~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~---~~~~~--------- 245 (409)
|...+..+++.+|.+|+|||+..+.+.+++.++..+.. .+.|.++++||+|+...+.. .++.+
T Consensus 80 ---F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~--~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~ 154 (638)
T 3j25_A 80 ---FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK--MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIK 154 (638)
T ss_dssp ---THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH--HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCC
T ss_pred ---HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH--cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCcccc
Confidence 44566777899999999999999999999998888777 78999999999998643211 11100
Q ss_pred --------------------------------HHH------------------hcCCCceEEEcccCCCCCHHHHHHHHH
Q 015293 246 --------------------------------WYE------------------KFTDVDEVIPVSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 246 --------------------------------~~~------------------~~~~~~~iv~iSA~~g~gi~~L~~~L~ 275 (409)
.+. ....+.|+++.||+++.|++.|++.|.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~ 234 (638)
T 3j25_A 155 QKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVIT 234 (638)
T ss_dssp CCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHH
T ss_pred ceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhh
Confidence 000 012345889999999999999999999
Q ss_pred hhCCCC
Q 015293 276 TKLPLG 281 (409)
Q Consensus 276 ~~l~~~ 281 (409)
+.+|..
T Consensus 235 ~~~p~p 240 (638)
T 3j25_A 235 NKFYSS 240 (638)
T ss_dssp HSCCCS
T ss_pred ccccCc
Confidence 998753
No 185
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.57 E-value=8.7e-15 Score=131.07 Aligned_cols=150 Identities=20% Similarity=0.189 Sum_probs=95.6
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCe--eEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY--QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 193 (409)
|+|.+|||||||+++|.+...... ..+..+.+...+.+..++. .+.+|||||... +..+. ...+..++
T Consensus 34 lvG~~g~GKSTLl~~l~~~~~~~~-~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~--~~~~~-------~~~~~~~~ 103 (191)
T 1oix_A 34 LIGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER--YRAIT-------SAYYRGAV 103 (191)
T ss_dssp EEECTTSSHHHHHHHHHHSCCCCS-CCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS--SSCCC-------HHHHTTCC
T ss_pred EECcCCCCHHHHHHHHhcCCCCCC-CCCccceEEEEEEEEECCEEEEEEEEECCCCcc--hhhhh-------HHHhhcCC
Confidence 999999999999999999876532 2233333444444555554 556799999632 22221 22356789
Q ss_pred eEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCChh--hHHHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 194 CIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 194 villVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~--~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
++++|+|.++... ....++.........+.|+++|+||+|+.... ......... ...+ ..++.+||+++.|+++
T Consensus 104 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~-~~~~-~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 104 GALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFA-EKNG-LSFIETSALDSTNVEA 181 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-HHTT-CEEEECCTTTCTTHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHH-HHcC-CEEEEEeCCCCCCHHH
Confidence 9999999876432 11222222111111468999999999986421 122222222 2233 3688899999999999
Q ss_pred HHHHHHhh
Q 015293 270 IRDWILTK 277 (409)
Q Consensus 270 L~~~L~~~ 277 (409)
+++.|.+.
T Consensus 182 l~~~l~~~ 189 (191)
T 1oix_A 182 AFQTILTE 189 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999764
No 186
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.57 E-value=1.4e-14 Score=140.11 Aligned_cols=155 Identities=14% Similarity=0.062 Sum_probs=96.3
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhh-HhHHHHHHHHHhhcCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM-LDSMMMKNVRSAGINADC 194 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~-l~~~~~~~~~~~~~~aDv 194 (409)
++|..|||||||++++.+..........+.|.......+ .....+.+||||| ++.+.. . + ....+++.|++
T Consensus 4 llGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-~~~v~LqIWDTAG--QErf~~~~---l--~~~~yyr~a~~ 75 (331)
T 3r7w_B 4 LMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPG--QLNYFEPS---Y--DSERLFKSVGA 75 (331)
T ss_dssp EECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-CSSSCEEEEECCS--CSSSCCCS---H--HHHHHHTTCSE
T ss_pred EECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-ccEEEEEEEECCC--chhccchh---h--hhhhhccCCCE
Confidence 899999999999999886643321111222211111112 2347899999999 544421 0 0 12345789999
Q ss_pred EEEEeeCCCCCChHHHHHHHHh---ccCCCCCCEEEEEecCCCCChhhH----HHH----HHHHHhcC---CCceEEEcc
Q 015293 195 IVVLVDACKAPERIDEILEEGV---GDHKDKLPILLVLNKKDLIKPGEI----AKK----LEWYEKFT---DVDEVIPVS 260 (409)
Q Consensus 195 illVvD~~~~~~~~~~~l~~~l---~~~~~~~p~ilvlNK~Dl~~~~~~----~~~----~~~~~~~~---~~~~iv~iS 260 (409)
+|+|+|+++.......++.+.+ ....++.|+++|+||+|+...... +.. .+.+.... ...+++.||
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTS 155 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTS 155 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEec
Confidence 9999999986433334443222 212267999999999999865321 111 11222221 124789999
Q ss_pred cCCCCCHHHHHHHHHhhCC
Q 015293 261 AKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 261 A~~g~gi~~L~~~L~~~l~ 279 (409)
|++ .+|.+.+..|++.+.
T Consensus 156 Akd-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 156 IFD-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp SSS-SHHHHHHHHHHTTSS
T ss_pred cCC-CcHHHHHHHHHHHHH
Confidence 998 599999999887663
No 187
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.56 E-value=3.9e-14 Score=128.90 Aligned_cols=140 Identities=17% Similarity=0.218 Sum_probs=79.4
Q ss_pred eE-EEecCCCChHHHHHHHhCCcceee--ecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~v--~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
.+ ++|++|+|||||+|+|++..+... +..+.++. ......+.+|||||+. .+..+...+ ......
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~--~~~~~~~~~---~~~~~~ 81 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DYDGSGVTLVDFPGHV--KLRYKLSDY---LKTRAK 81 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET-------TGGGSSCEEEECCCCG--GGTHHHHHH---HHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE-------EeeCceEEEEECCCcH--HHHHHHHHH---HHhccc
Confidence 44 999999999999999998775321 12222221 1245789999999963 333322222 222234
Q ss_pred CcceEEEEeeCC-C--CCChHHHHHHHHhcc----CCCCCCEEEEEecCCCCChhhHHHH-------HHHHHhcCCCceE
Q 015293 191 NADCIVVLVDAC-K--APERIDEILEEGVGD----HKDKLPILLVLNKKDLIKPGEIAKK-------LEWYEKFTDVDEV 256 (409)
Q Consensus 191 ~aDvillVvD~~-~--~~~~~~~~l~~~l~~----~~~~~p~ilvlNK~Dl~~~~~~~~~-------~~~~~~~~~~~~i 256 (409)
.+|++++|+|++ + .......++...+.. ...+.|+++|+||+|+.....+... ...+....+ .++
T Consensus 82 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~-~~~ 160 (218)
T 1nrj_B 82 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK-KSL 160 (218)
T ss_dssp GEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred cCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHh-ccc
Confidence 589999999998 3 334444555444332 1257999999999999865433211 111111111 357
Q ss_pred EEcccCCCCC
Q 015293 257 IPVSAKYGHG 266 (409)
Q Consensus 257 v~iSA~~g~g 266 (409)
+++||++|.+
T Consensus 161 ~~~Sa~~~~~ 170 (218)
T 1nrj_B 161 NEVERKINEE 170 (218)
T ss_dssp HC--------
T ss_pred cccccccccc
Confidence 8899998865
No 188
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=142.51 Aligned_cols=160 Identities=14% Similarity=0.165 Sum_probs=80.9
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecC--------CCceEEEEEEEEeCCC--eeEEEEeCCCCch-----hhhhhHhHH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNK--------PQTTRHRILGICSGPE--YQMILYDTPGIIE-----KKIHMLDSM 180 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~--------~~tt~~~~~~~~~~~~--~~i~liDtpG~~~-----~~~~~l~~~ 180 (409)
|+|++|+|||||+|+|++......... +..+.......+...+ ..+.+|||||+.+ ..+..+...
T Consensus 42 vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~ 121 (361)
T 2qag_A 42 VVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISY 121 (361)
T ss_dssp ECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CCTHHH
T ss_pred EEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHH
Confidence 999999999999999988765432211 1122222222233333 3789999999743 122333332
Q ss_pred HHHHHHHhhc-------------CcceEEEEeeC-CCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHH
Q 015293 181 MMKNVRSAGI-------------NADCIVVLVDA-CKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW 246 (409)
Q Consensus 181 ~~~~~~~~~~-------------~aDvillVvD~-~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~ 246 (409)
+......++. .+|+++|+++. .++....+..+...+. .+.|+|+|+||+|+....++......
T Consensus 122 i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~piIlV~NK~Dl~~~~ev~~~k~~ 198 (361)
T 2qag_A 122 IDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLTLKERERLKKR 198 (361)
T ss_dssp HHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SCEEEEEECCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 2222222222 23578888876 4555666655555543 57999999999999887665442222
Q ss_pred H---HhcCCCceEEEcccCCCCC---HHHHHHHHHhhCC
Q 015293 247 Y---EKFTDVDEVIPVSAKYGHG---VEDIRDWILTKLP 279 (409)
Q Consensus 247 ~---~~~~~~~~iv~iSA~~g~g---i~~L~~~L~~~l~ 279 (409)
. ....+ .+++++||++|.| +..+...|.+.+|
T Consensus 199 i~~~~~~~~-i~~~~~Sa~~~~~~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 199 ILDEIEEHN-IKIYHLPDAESDEDEDFKEQTRLLKASIP 236 (361)
T ss_dssp HHHHTTCC--CCSCCCC---------CHHHHHHHHHTCS
T ss_pred HHHHHHHCC-CCEEeCCCcCCCcchhHHHHHHHHHhcCC
Confidence 2 22223 3789999999987 3344555555554
No 189
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.55 E-value=5.6e-15 Score=145.81 Aligned_cols=114 Identities=18% Similarity=0.133 Sum_probs=73.2
Q ss_pred CCeeEEEEeCCCCchhh----hhhHhHHHHHHHHHhhcCcceEEEEeeCCCCC--ChHHHHHHHHhccCCCCCCEEEEEe
Q 015293 157 PEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLN 230 (409)
Q Consensus 157 ~~~~i~liDtpG~~~~~----~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilvlN 230 (409)
....+.||||||+.... ...+...+...+..++..+|++++|+|+.... ......+...+.. .+.|+++|+|
T Consensus 134 ~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~--~~~~~i~V~n 211 (360)
T 3t34_A 134 NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDP--SGDRTFGVLT 211 (360)
T ss_dssp TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCT--TCTTEEEEEE
T ss_pred CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcc--cCCCEEEEEe
Confidence 34579999999986531 22344555667778899999999999875433 2222334444443 5789999999
Q ss_pred cCCCCChhh-HHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHH
Q 015293 231 KKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDW 273 (409)
Q Consensus 231 K~Dl~~~~~-~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~ 273 (409)
|+|+..... ........... ...+++++|+.++.|+++++..
T Consensus 212 K~Dl~~~~~~~~~~~~~~~~~-~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 212 KIDLMDKGTDAVEILEGRSFK-LKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp CGGGCCTTCCSHHHHTTSSSC-CSSCCEEECCCCHHHHHTTCCH
T ss_pred CCccCCCcccHHHHHcCcccc-ccCCeEEEEECChHHhccCCCH
Confidence 999986432 11111111111 1236789999999888876544
No 190
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.55 E-value=1.3e-14 Score=136.89 Aligned_cols=119 Identities=19% Similarity=0.264 Sum_probs=85.1
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhh--cCcc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG--INAD 193 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~--~~aD 193 (409)
++|++|+|||||+|+|++...+.++..+++|.......+..++..+.||||||+.+ +..+.....+.+...+ ..+|
T Consensus 41 lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~--~~~~~~~~~~~i~~~l~~~~~~ 118 (262)
T 3def_A 41 VLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVE--AGYVNHQALELIKGFLVNRTID 118 (262)
T ss_dssp EEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEE--TTEECHHHHHHHHHHTTTCEEC
T ss_pred EECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCC--cccchHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999877888899998888888888899999999999743 3333333333333333 3789
Q ss_pred eEEEEeeCCCC-CChHHHHHHHHhccC-CC--CCCEEEEEecCCCCC
Q 015293 194 CIVVLVDACKA-PERIDEILEEGVGDH-KD--KLPILLVLNKKDLIK 236 (409)
Q Consensus 194 villVvD~~~~-~~~~~~~l~~~l~~~-~~--~~p~ilvlNK~Dl~~ 236 (409)
++++|+|++.. ....+..+...+... .. ..|+++|+||+|+..
T Consensus 119 ~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 119 VLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp EEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 99999877543 344433344333321 11 259999999999963
No 191
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.54 E-value=4.5e-17 Score=164.24 Aligned_cols=240 Identities=16% Similarity=0.187 Sum_probs=138.0
Q ss_pred EEecCCCChHHHHHHHhC------CcceeeecCCC------------------------ceEEEE----EEEEeCCCeeE
Q 015293 116 VLGKPNVGKSTLANQMIG------QKLSIVTNKPQ------------------------TTRHRI----LGICSGPEYQM 161 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~------~~~~~v~~~~~------------------------tt~~~~----~~~~~~~~~~i 161 (409)
++|.+|+||||++++|.+ .++..++..+. +++++. ..+....+..+
T Consensus 104 ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~~~~D~ 183 (432)
T 2v3c_C 104 LVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFKKADV 183 (432)
T ss_dssp EECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTSSCSE
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHhhCCCE
Confidence 999999999999999975 34443332211 233211 01111256789
Q ss_pred EEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCC-C-EEEEEecCCCCChhh
Q 015293 162 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-P-ILLVLNKKDLIKPGE 239 (409)
Q Consensus 162 ~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~-p-~ilvlNK~Dl~~~~~ 239 (409)
+|+||||..+.. ..+...+ .. ...+..+|.+++|+|++.+.... . ...... ... | ..+|+||+|......
T Consensus 184 vIIDT~G~~~~~-~~l~~~l-~~-i~~~~~~d~vllVvda~~g~~~~-~-~~~~~~---~~~~~i~gvVlnK~D~~~~~g 255 (432)
T 2v3c_C 184 LIIDTAGRHKEE-KGLLEEM-KQ-IKEITNPDEIILVIDGTIGQQAG-I-QAKAFK---EAVGEIGSIIVTKLDGSAKGG 255 (432)
T ss_dssp EEEECCCSCSSH-HHHHHHH-HH-TTSSSCCSEEEEEEEGGGGGGHH-H-HHHHHH---TTSCSCEEEEEECSSSCSTTH
T ss_pred EEEcCCCCcccc-HHHHHHH-HH-HHHHhcCcceeEEeeccccHHHH-H-HHHHHh---hcccCCeEEEEeCCCCccchH
Confidence 999999975421 1222222 11 12234799999999997654221 1 222222 335 5 899999999864322
Q ss_pred -HHHHHHHHH-------------hcCCCceEEEcccCCCCC-HHHHHHHHHhhCCCCCCCCCCccccCchHHHHHHHHHH
Q 015293 240 -IAKKLEWYE-------------KFTDVDEVIPVSAKYGHG-VEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIR 304 (409)
Q Consensus 240 -~~~~~~~~~-------------~~~~~~~iv~iSA~~g~g-i~~L~~~L~~~l~~~~~~~~~~~~t~~~~r~~i~EiiR 304 (409)
......... ....+.+..++|+..|.| +..|++.+.+.++ .+. ++.+.++...++.+
T Consensus 256 ~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~-------e~~-~~~~~k~~~~~~~~ 327 (432)
T 2v3c_C 256 GALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVD-------EKT-EESIDAIMRGKFTL 327 (432)
T ss_dssp HHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSC-------SSS-STTHHHHCCSCCHH
T ss_pred HHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHH-------hhh-HHHHHHHHcCCCCH
Confidence 111211111 001233445678888888 7777666655433 333 55677777778888
Q ss_pred HHHHhhcCC------------CCCceeEE-EEEEEEecCCCeeEEEEEEE----EeeCCcceEEeecCCchHHHHHHHHH
Q 015293 305 EKIFMQYRN------------EVPYACQV-NVVSYKTRPTAKDFIQVEIV----VEKNSQKIILIGKGGKALKLLATAAR 367 (409)
Q Consensus 305 e~i~~~~~~------------eipys~~v-~v~~~~~~~~~~~~i~~~i~----v~~~~~~~iliG~~G~~ik~i~~~ar 367 (409)
+.++..+++ ++||...+ ....++..+.....|.+.|+ +||++++.| +|+++|+|+..|+
T Consensus 328 ~~~~~~l~~~~~~g~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~a~i~smt~~er~~~~~i----~~sr~~rI~~gsg 403 (432)
T 2v3c_C 328 NELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTKEERENPKII----KASRIRRIARGSG 403 (432)
T ss_dssp HHHHHHTTTTSCC-----------------------CCHHHHHHHHHHHTTSCHHHHSSCTTC----CHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHccccccccchhhhcccHHHHHHHHHHHHhCCHHHhhCcccc----CHHHHHHHHhhcC
Confidence 999988886 99996653 23444422222345667787 999999955 7999999999997
Q ss_pred H---HHHHHcC
Q 015293 368 L---DIEDFLQ 375 (409)
Q Consensus 368 ~---~l~~~~~ 375 (409)
. ++.++++
T Consensus 404 ~~~~~v~~ll~ 414 (432)
T 2v3c_C 404 TTENDVREVLR 414 (432)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 6 6666553
No 192
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.53 E-value=4.6e-14 Score=151.01 Aligned_cols=110 Identities=19% Similarity=0.141 Sum_probs=79.2
Q ss_pred EEecCCCChHHHHHHHhCCccee-----e------ecCC------CceEEEEEEEEeC-------CCeeEEEEeCCCCch
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI-----V------TNKP------QTTRHRILGICSG-------PEYQMILYDTPGIIE 171 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~-----v------~~~~------~tt~~~~~~~~~~-------~~~~i~liDtpG~~~ 171 (409)
|+||.++|||||..+|+.....+ + ++.- |.|.......+.+ +++.|+|+||||+.+
T Consensus 18 IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvD 97 (709)
T 4fn5_A 18 ICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVD 97 (709)
T ss_dssp EECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCSCTT
T ss_pred EEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcc
Confidence 99999999999999997432111 1 1111 1111111111222 357899999999766
Q ss_pred hhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 172 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
|..++..+++-+|.+|+|||+..+.+.+++.+++.+.. .+.|.++++||+|+..
T Consensus 98 ---------F~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~--~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 98 ---------FTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK--YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp ---------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--HTCCEEEEEECSSSTT
T ss_pred ---------cHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEccccccC
Confidence 34566777899999999999999999999998888776 7899999999999864
No 193
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.52 E-value=1.2e-14 Score=136.29 Aligned_cols=159 Identities=19% Similarity=0.170 Sum_probs=99.8
Q ss_pred EEecCCCChHHHHHHHh-----CCcceeeecCCCceEE------------EEEEEE------------------------
Q 015293 116 VLGKPNVGKSTLANQMI-----GQKLSIVTNKPQTTRH------------RILGIC------------------------ 154 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~-----~~~~~~v~~~~~tt~~------------~~~~~~------------------------ 154 (409)
++|.+|||||||++.|. |.++..+...++.+.. .....+
T Consensus 19 ~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 98 (262)
T 1yrb_A 19 FVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLMEKFNEY 98 (262)
T ss_dssp EECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHTTHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHhhhHHHH
Confidence 89999999999999998 8888777766552210 000000
Q ss_pred -----e-CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHH-----HHHHhccCCCCC
Q 015293 155 -----S-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI-----LEEGVGDHKDKL 223 (409)
Q Consensus 155 -----~-~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~-----l~~~l~~~~~~~ 223 (409)
. ..+..++||||||.... ..+.. +......++.. +++++|+|+.........+ ....... .+.
T Consensus 99 ~~~l~~~~~~~d~iiiDtpG~~~~--~~~~~-l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~ 172 (262)
T 1yrb_A 99 LNKILRLEKENDYVLIDTPGQMET--FLFHE-FGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGA 172 (262)
T ss_dssp HHHHHHHHHHCSEEEEECCSSHHH--HHHSH-HHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTS
T ss_pred HHHHHHHhhcCCEEEEeCCCccch--hhhhh-hHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCC
Confidence 0 01247999999996432 11211 12223344567 9999999987665443321 1111111 468
Q ss_pred CEEEEEecCCCCChhhHHHHHHH----------------------------HHhcCCCceEEEcccCCCCCHHHHHHHHH
Q 015293 224 PILLVLNKKDLIKPGEIAKKLEW----------------------------YEKFTDVDEVIPVSAKYGHGVEDIRDWIL 275 (409)
Q Consensus 224 p~ilvlNK~Dl~~~~~~~~~~~~----------------------------~~~~~~~~~iv~iSA~~g~gi~~L~~~L~ 275 (409)
|+++|+||+|+............ ........+++++||++|.|+++|+++|.
T Consensus 173 p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~ 252 (262)
T 1yrb_A 173 TTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAY 252 (262)
T ss_dssp CEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHH
T ss_pred CeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHH
Confidence 99999999999865432211111 12222334789999999999999999998
Q ss_pred hhCCC
Q 015293 276 TKLPL 280 (409)
Q Consensus 276 ~~l~~ 280 (409)
+.++.
T Consensus 253 ~~~~~ 257 (262)
T 1yrb_A 253 EHYCT 257 (262)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 87653
No 194
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.49 E-value=4.3e-14 Score=141.75 Aligned_cols=207 Identities=15% Similarity=0.184 Sum_probs=102.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeee------cCCCceE-EEEEEEEeCCC--eeEEEEeCCCCchhhh-----hhHhHHH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVT------NKPQTTR-HRILGICSGPE--YQMILYDTPGIIEKKI-----HMLDSMM 181 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~------~~~~tt~-~~~~~~~~~~~--~~i~liDtpG~~~~~~-----~~l~~~~ 181 (409)
|+|.+|+|||||+|.|+|....... ....++. ......+...+ ..+.+|||||+..... ..+...+
T Consensus 36 lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i 115 (418)
T 2qag_C 36 VVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYI 115 (418)
T ss_dssp EECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHHHHHH
T ss_pred EECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHH
Confidence 9999999999999999998753211 0122222 12211222222 3689999999754211 1111111
Q ss_pred HHHH-----------HHhhcC--cceEEEEeeCC-CCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHH---
Q 015293 182 MKNV-----------RSAGIN--ADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL--- 244 (409)
Q Consensus 182 ~~~~-----------~~~~~~--aDvillVvD~~-~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~--- 244 (409)
.... +..+.+ +|++||+++.+ ++....+..++..+. .+.|+|+|+||+|+....++..+.
T Consensus 116 ~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev~~~k~~i 192 (418)
T 2qag_C 116 DSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQQFKKQI 192 (418)
T ss_dssp HHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHHHHHHHHH
Confidence 1111 112333 45677777776 567776655555554 478999999999998766554322
Q ss_pred -HHHHhcCCCceEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCccccCchHHHHHHHHHHHHHHhhcCCCCCceeEEEE
Q 015293 245 -EWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNV 323 (409)
Q Consensus 245 -~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~~~l~~~~~~~~~~~~t~~~~r~~i~EiiRe~i~~~~~~eipys~~v~v 323 (409)
..+... + .+++.+||+++.++++++..| .+++||++....
T Consensus 193 ~~~~~~~-~-i~~~~~sa~~~~~v~~~~~~l-------------------------------------~~~iPfavv~s~ 233 (418)
T 2qag_C 193 MKEIQEH-K-IKIYEFPETDDEEENKLVKKI-------------------------------------KDRLPLAVVGSN 233 (418)
T ss_dssp HHHHHHH-T-CCCCCCC------------------------------------------------------CCEEECC--
T ss_pred HHHHHHc-C-CeEEeCCCCCCcCHHHHHHHH-------------------------------------HhhCCcceeecc
Confidence 222222 2 367889999888876544333 455666665444
Q ss_pred EEEEecC---CCeeEEEEEEEEeeCCcce------EEeecCCchHHHHHH
Q 015293 324 VSYKTRP---TAKDFIQVEIVVEKNSQKI------ILIGKGGKALKLLAT 364 (409)
Q Consensus 324 ~~~~~~~---~~~~~i~~~i~v~~~~~~~------iliG~~G~~ik~i~~ 364 (409)
..++... .++.++...+.|++++|.. ++|++....++..-.
T Consensus 234 ~~~~~~g~~vr~R~y~wg~i~Ven~~h~df~~Lr~~Li~~~~~dl~~~T~ 283 (418)
T 2qag_C 234 TIIEVNGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTN 283 (418)
T ss_dssp -----------CEECSSCEECC--CCSSTTTHHHHHHHTTSHHHHHHHHH
T ss_pred eeEecCCceeecccccceEEEecchhhCCHHHHHHHHHHHHHHHHHHhhh
Confidence 4333321 1244456678889999984 589999988887664
No 195
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.49 E-value=1.1e-14 Score=132.89 Aligned_cols=146 Identities=16% Similarity=0.238 Sum_probs=94.0
Q ss_pred EEecCCCChHHHHHHHhCC-----cceeeecCCCceEEE--------EEEEE------------------eCCCeeEEEE
Q 015293 116 VLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHR--------ILGIC------------------SGPEYQMILY 164 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~-----~~~~v~~~~~tt~~~--------~~~~~------------------~~~~~~i~li 164 (409)
++|++|+|||||+++|++. +.+.+...++++.+. ....+ ...+..+++|
T Consensus 35 i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii 114 (221)
T 2wsm_A 35 IMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDCDLLLI 114 (221)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTCSEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCCCEEEE
Confidence 9999999999999999864 344455555433110 00011 1234678999
Q ss_pred eCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCCh--hhHHH
Q 015293 165 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAK 242 (409)
Q Consensus 165 DtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~--~~~~~ 242 (409)
||||....+.. ....++.+++|+|++.+....... . .. .+.|.++|+||+|+... .....
T Consensus 115 dt~G~~~~~~~------------~~~~~~~~i~vvd~~~~~~~~~~~-~---~~--~~~~~iiv~NK~Dl~~~~~~~~~~ 176 (221)
T 2wsm_A 115 ENVGNLICPVD------------FDLGENYRVVMVSVTEGDDVVEKH-P---EI--FRVADLIVINKVALAEAVGADVEK 176 (221)
T ss_dssp EEEEBSSGGGG------------CCCSCSEEEEEEEGGGCTTHHHHC-H---HH--HHTCSEEEEECGGGHHHHTCCHHH
T ss_pred eCCCCCCCCch------------hccccCcEEEEEeCCCcchhhhhh-h---hh--hhcCCEEEEecccCCcchhhHHHH
Confidence 99994211100 012568899999998764332211 1 11 35789999999998643 13344
Q ss_pred HHHHHHhcCCCceEEEcccCCCCCHHHHHHHHHhhCC
Q 015293 243 KLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 243 ~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~~~l~ 279 (409)
....+.......+++++||++|.|+++|+++|.+.+.
T Consensus 177 ~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 177 MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp HHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 4444444334458999999999999999999988764
No 196
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.49 E-value=3.2e-14 Score=126.76 Aligned_cols=120 Identities=18% Similarity=0.272 Sum_probs=72.6
Q ss_pred eE-EEecCCCChHHHHHHHhCCccee--eecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 114 KS-VLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~~~~~~--v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
.+ ++|.+|||||||+|+|++..... .+..+.++.+ ..+..+.+|||||... +..... ......+.
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~Dt~G~~~--~~~~~~---~~~~~~~~ 117 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------YDGSGVTLVDFPGHVK--LRYKLS---DYLKTRAK 117 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCC------------C-------CCCTTCSEEEETTCCB--SSCCHH---HHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee-------ecCCeEEEEECCCCch--HHHHHH---HHHHhhcc
Confidence 44 99999999999999999877532 1222333222 2557899999999633 222222 22233346
Q ss_pred CcceEEEEeeCC-CCC--ChHHHHHHHHhcc----CCCCCCEEEEEecCCCCChhhHHHHHH
Q 015293 191 NADCIVVLVDAC-KAP--ERIDEILEEGVGD----HKDKLPILLVLNKKDLIKPGEIAKKLE 245 (409)
Q Consensus 191 ~aDvillVvD~~-~~~--~~~~~~l~~~l~~----~~~~~p~ilvlNK~Dl~~~~~~~~~~~ 245 (409)
.+|++++|+|++ +.. .....++...+.. ...+.|+++|+||+|+...........
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 179 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKD 179 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHH
T ss_pred cCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHH
Confidence 799999999998 321 1222333333321 125799999999999986554444333
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.47 E-value=2.5e-13 Score=133.46 Aligned_cols=83 Identities=27% Similarity=0.316 Sum_probs=60.1
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC-----------------eeEEEEeCCCCchhhh--hh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKKI--HM 176 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~-----------------~~i~liDtpG~~~~~~--~~ 176 (409)
|+|.||||||||+|+|++.. +.++++|++|.++..+.+...+ ..+.||||||+..... ..
T Consensus 7 IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~g 85 (363)
T 1jal_A 7 IVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEG 85 (363)
T ss_dssp EECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGG
T ss_pred EECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccccch
Confidence 99999999999999999988 4578899999887766666654 4799999999864321 12
Q ss_pred HhHHHHHHHHHhhcCcceEEEEeeCCC
Q 015293 177 LDSMMMKNVRSAGINADCIVVLVDACK 203 (409)
Q Consensus 177 l~~~~~~~~~~~~~~aDvillVvD~~~ 203 (409)
+. ......++.+|++++|+|+++
T Consensus 86 l~----~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 86 LG----NKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp GT----CCHHHHHHTCSEEEEEEECSC
T ss_pred HH----HHHHHHHHhcCeEEEEEecCC
Confidence 21 223445789999999999986
No 198
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.46 E-value=6.6e-16 Score=158.11 Aligned_cols=252 Identities=17% Similarity=0.186 Sum_probs=140.2
Q ss_pred EEecCCCChHHHHHHHh------CCcceeeecCCCc-----------eE--EEEEEE----------------EeCCCee
Q 015293 116 VLGKPNVGKSTLANQMI------GQKLSIVTNKPQT-----------TR--HRILGI----------------CSGPEYQ 160 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~------~~~~~~v~~~~~t-----------t~--~~~~~~----------------~~~~~~~ 160 (409)
++|.+||||||++++|. |.++..++..+.. ++ -..... +...+..
T Consensus 106 ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~~~~~D 185 (504)
T 2j37_W 106 FVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFE 185 (504)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHHHTTCC
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHHHCCCc
Confidence 99999999999999999 8887766653311 00 011110 0115678
Q ss_pred EEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCE-EEEEecCCCCChhh
Q 015293 161 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKDLIKPGE 239 (409)
Q Consensus 161 i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~-ilvlNK~Dl~~~~~ 239 (409)
++||||||..+.. ..+...+.. +..+ ..+|.+++|+|++.+.... .....+. ...|+ ++|+||+|......
T Consensus 186 vvIIDTpG~~~~~-~~l~~el~~-~~~~-i~pd~vllVvDa~~g~~~~--~~a~~~~---~~~~i~gvVlNK~D~~~~~g 257 (504)
T 2j37_W 186 IIIVDTSGRHKQE-DSLFEEMLQ-VANA-IQPDNIVYVMDASIGQACE--AQAKAFK---DKVDVASVIVTKLDGHAKGG 257 (504)
T ss_dssp EEEEEECCCCTTC-HHHHHHHHH-HHHH-HCCSEEEEEEETTCCTTHH--HHHHHHH---HHHCCCCEEEECTTSCCCCT
T ss_pred EEEEeCCCCcccc-hhHHHHHHH-HHhh-hcCceEEEEEeccccccHH--HHHHHHH---hhcCceEEEEeCCccccchH
Confidence 9999999976421 122222211 2222 2789999999998875422 2222222 22674 89999999875322
Q ss_pred -HHHHHHHHH-------------hcCCCceEEEcccCCCCC-HHHHHHHHHhhCCCCCCCCCCccccCc-hHHHHHHHHH
Q 015293 240 -IAKKLEWYE-------------KFTDVDEVIPVSAKYGHG-VEDIRDWILTKLPLGPAYYPKDIVSEH-PERFFVGEII 303 (409)
Q Consensus 240 -~~~~~~~~~-------------~~~~~~~iv~iSA~~g~g-i~~L~~~L~~~l~~~~~~~~~~~~t~~-~~r~~i~Eii 303 (409)
.......+. ....+.+.+++||.+|.| +.+|++++.+...+..........+.. ....+...+.
T Consensus 258 ~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~~~~~~~~l~~k~~~g~~~l~d~~~~l~ 337 (504)
T 2j37_W 258 GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQ 337 (504)
T ss_dssp HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTTTTCCCTTTTTSCTTSGGGGCCCHHHHH
T ss_pred HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 111222111 011234556789999999 999999998762211111112222221 0111111111
Q ss_pred HH---HHHhhcCCCCCceeE--EEEEEEEecCCCeeEEEEEEE----EeeCCcc-eEEeecCCchHHHHHHHHHH---HH
Q 015293 304 RE---KIFMQYRNEVPYACQ--VNVVSYKTRPTAKDFIQVEIV----VEKNSQK-IILIGKGGKALKLLATAARL---DI 370 (409)
Q Consensus 304 Re---~i~~~~~~eipys~~--v~v~~~~~~~~~~~~i~~~i~----v~~~~~~-~iliG~~G~~ik~i~~~ar~---~l 370 (409)
.. --+..+-..+|+.+. +....+...+.....+.+.+. .||++|+ ..+||++|+.+++|+..|.. |+
T Consensus 338 ~~~~~G~~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~Er~~~~~p~~~~~~~sr~~ria~gsg~~~~~v 417 (504)
T 2j37_W 338 NIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDV 417 (504)
T ss_dssp HCCCCCCCCSSCCCCSCCSCGGGCSCCCCCHHHHHHHHHHHHTTSCHHHHHCTTHHHHHHHCTHHHHHHHHHTTCCHHHH
T ss_pred HHHHcCCHHHHHHhccccchhhccccccccChHhhhhhHHHHHhCCHHHhcCCCCCcccCCChHHHHHHHHhcCCCHHHH
Confidence 00 001233457888764 321111111111122333344 6888888 89999999999999999987 66
Q ss_pred HHHcC
Q 015293 371 EDFLQ 375 (409)
Q Consensus 371 ~~~~~ 375 (409)
.+++.
T Consensus 418 ~~ll~ 422 (504)
T 2j37_W 418 QELLT 422 (504)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.41 E-value=3.8e-13 Score=132.80 Aligned_cols=83 Identities=22% Similarity=0.313 Sum_probs=61.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCC---------------------CeeEEEEeCCCCchhhh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP---------------------EYQMILYDTPGIIEKKI 174 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~---------------------~~~i~liDtpG~~~~~~ 174 (409)
|+|.||||||||+|+|++.. +.++++|++|.++..+..... +..+.+|||||+.....
T Consensus 6 IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~a~ 84 (368)
T 2dby_A 6 IVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKGAH 84 (368)
T ss_dssp EECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCCCC
T ss_pred EECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcccccc
Confidence 89999999999999999876 446778888876655554332 35799999999864221
Q ss_pred --hhHhHHHHHHHHHhhcCcceEEEEeeCCC
Q 015293 175 --HMLDSMMMKNVRSAGINADCIVVLVDACK 203 (409)
Q Consensus 175 --~~l~~~~~~~~~~~~~~aDvillVvD~~~ 203 (409)
..+. ..+...++.||++++|+|+++
T Consensus 85 ~~~~lg----~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 85 KGEGLG----NQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp SSSCTT----HHHHHHHHTCSEEEEEEECCC
T ss_pred ccchHH----HHHHHHHHhCCEEEEEEECCC
Confidence 1232 234455789999999999986
No 200
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.37 E-value=1.1e-13 Score=137.21 Aligned_cols=185 Identities=19% Similarity=0.160 Sum_probs=93.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC-----------------eeEEEEeCCCCchhhhhhHh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKKIHMLD 178 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~-----------------~~i~liDtpG~~~~~~~~l~ 178 (409)
|+|.||||||||+|+|++.+. .++++|++|.++..+.+...+ .++.+|||||+..... -.
T Consensus 27 IVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as--~~ 103 (396)
T 2ohf_A 27 IVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH--NG 103 (396)
T ss_dssp EECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----------
T ss_pred EECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc--hh
Confidence 999999999999999999887 688999999888777766543 2599999999864221 11
Q ss_pred HHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEE
Q 015293 179 SMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIP 258 (409)
Q Consensus 179 ~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~ 258 (409)
..+...+..+++.+|++++|+|+++... +.. +.. ...| +|++|.+...-.......+.+.........
T Consensus 104 ~glg~~~l~~ir~aD~Il~VvD~~~~~~-----i~~-v~~--~~dP----~~di~~i~~El~l~d~~~~~k~~~~~~k~~ 171 (396)
T 2ohf_A 104 QGLGNAFLSHISACDGIFHLTRAFEDDD-----ITH-VEG--SVDP----IRDIEIIHEELQLKDEEMIGPIIDKLEKVA 171 (396)
T ss_dssp ---CCHHHHHHHTSSSEEEEEEC--------------------CTT----HHHHHHHHHHHHHHHHHHHHHHHHTTCSCC
T ss_pred hHHHHHHHHHHHhcCeEEEEEecCCCcc-----hhh-hcC--CCCh----HHHHHHhhhhhhhhhHHHHHHhhhhhhhhh
Confidence 2222345667889999999999975321 111 111 2234 455554432211111122221111112233
Q ss_pred cc--cCCCCCHHHHHHHHHhhCCCC-CCC--CCCccccCchHHHHHHHHHHHHHHhhcCCCCCceeEEEE
Q 015293 259 VS--AKYGHGVEDIRDWILTKLPLG-PAY--YPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNV 323 (409)
Q Consensus 259 iS--A~~g~gi~~L~~~L~~~l~~~-~~~--~~~~~~t~~~~r~~i~EiiRe~i~~~~~~eipys~~v~v 323 (409)
.| ++.+.+..++++.+...++++ ++. ++ + ++. .. .+++ +.++....+.++|.+.+..
T Consensus 172 ~~~g~~~~~~~~~ll~~i~~~L~e~~~~~~~~~-~-~~~---~e--~e~i-~~~~llt~KPviy~~Nv~e 233 (396)
T 2ohf_A 172 VRGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYH-D-WND---KE--IEVL-NKHLFLTSKPMVYLVNLSE 233 (396)
T ss_dssp --------CCHHHHHHHHHHHTTC--CCGGGCC-C-CCH---HH--HHHH-HHHCCGGGSCEEEEEECCH
T ss_pred hcccchhhhhHHHHHHHHHHHHHhcCcchhhcc-c-CCH---HH--HHHH-HHHHHHhCCceEEEEEecH
Confidence 44 577789999999999999887 443 22 1 221 11 2455 5666778899999887643
No 201
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.37 E-value=2.1e-13 Score=148.22 Aligned_cols=109 Identities=22% Similarity=0.248 Sum_probs=74.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCc---------------eEEEEEEEEeC----------------CCeeEEEE
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQT---------------TRHRILGICSG----------------PEYQMILY 164 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~t---------------t~~~~~~~~~~----------------~~~~i~li 164 (409)
|+|++|+|||||+|+|++....+.+..+++ |.......+.+ .+..++||
T Consensus 24 IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~li 103 (842)
T 1n0u_A 24 VIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLI 103 (842)
T ss_dssp EECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEE
T ss_pred EECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceEEEE
Confidence 999999999999999987643333222222 21111111112 26789999
Q ss_pred eCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCC
Q 015293 165 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 235 (409)
Q Consensus 165 DtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~ 235 (409)
||||+.+ +. ..+..+++.+|++|+|+|++++...++..++..+.. .+.|+++|+||+|+.
T Consensus 104 DTPG~~d--f~-------~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~--~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 104 DSPGHVD--FS-------SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--ERIKPVVVINKVDRA 163 (842)
T ss_dssp CCCCCCS--SC-------HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCEEEEEEECHHHH
T ss_pred ECcCchh--hH-------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCeEEEEECCCcc
Confidence 9999644 22 234556789999999999999887776665544443 679999999999986
No 202
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.35 E-value=3.5e-12 Score=122.73 Aligned_cols=157 Identities=17% Similarity=0.182 Sum_probs=76.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecC-------CCce-EEEEEEEEeCC--CeeEEEEeCCCCch-----hhhhhHhHH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNK-------PQTT-RHRILGICSGP--EYQMILYDTPGIIE-----KKIHMLDSM 180 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~-------~~tt-~~~~~~~~~~~--~~~i~liDtpG~~~-----~~~~~l~~~ 180 (409)
|+|++|+|||||+|.|.|......+.. ..+. ........... ...+.+|||||+.. +.+..+...
T Consensus 23 lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~ 102 (301)
T 2qnr_A 23 VVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISY 102 (301)
T ss_dssp EEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTTHHHH
T ss_pred EECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHH
Confidence 999999999999999998643322211 1111 11111122222 35789999999732 112222221
Q ss_pred HHH----HHHHh---------hcCcceEEEEeeCCC-CCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHH----
Q 015293 181 MMK----NVRSA---------GINADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK---- 242 (409)
Q Consensus 181 ~~~----~~~~~---------~~~aDvillVvD~~~-~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~---- 242 (409)
+.. ..... ...+++++++++.+. +.......++..+. .+.|+++|+||+|+....++..
T Consensus 103 l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~---~~~~iilV~~K~Dl~~~~e~~~~~~~ 179 (301)
T 2qnr_A 103 IDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLTLKERERLKKR 179 (301)
T ss_dssp HHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT---TTSCEEEEECCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH---hcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 111 11111 112456777777654 46665544443332 4679999999999987654432
Q ss_pred HHHHHHhcCCCceEEEcccCCCCCHHHHHHHHHhhC
Q 015293 243 KLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 243 ~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~~~l 278 (409)
....... .+ .+++++||++| |+++++..+.+.+
T Consensus 180 ~~~~~~~-~~-~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 180 ILDEIEE-HN-IKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp HHHHHHH-TT-CCCCCCC----------CHHHHHHH
T ss_pred HHHHHHH-cC-CeEEecCCccc-cccHHHHHHHHHh
Confidence 2222333 23 37899999999 9999998887655
No 203
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.28 E-value=7.8e-14 Score=138.08 Aligned_cols=146 Identities=21% Similarity=0.212 Sum_probs=93.3
Q ss_pred EEEecCCCChHHHHHHHhCC-----cceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh--hhhHhHHHHHHHHH
Q 015293 115 SVLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMKNVRS 187 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~~-----~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~--~~~l~~~~~~~~~~ 187 (409)
.++|.||+|||||+|+|++. ....+++.|+||++.....+. ..+.++||||+.... ...+.........
T Consensus 166 ~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~~~~l~~~~l~~~~- 241 (369)
T 3ec1_A 166 YVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE---SGATLYDTPGIINHHQMAHFVDARDLKIIT- 241 (369)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS---TTCEEEECCSCCCCSSGGGGSCTTTHHHHS-
T ss_pred EEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC---CCeEEEeCCCcCcHHHHHHHHhHHHHHHHh-
Confidence 39999999999999999987 566789999999987765433 247999999996532 1122222111111
Q ss_pred hhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCH
Q 015293 188 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 267 (409)
Q Consensus 188 ~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi 267 (409)
.....|.+++++++..............+.. .+.|+++++||+|.....+.....+.+.+..+. .+.+.++....++
T Consensus 242 ~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~--~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~-~l~p~~~~~~~~~ 318 (369)
T 3ec1_A 242 PKREIHPRVYQLNEGQTLFFGGLARLDYIKG--GRRSFVCYMANELTVHRTKLEKADSLYANQLGE-LLSPPSKRYAAEF 318 (369)
T ss_dssp CSSCCCCEEEEECTTEEEEETTTEEEEEEES--SSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTT-TBCSSCGGGTTTC
T ss_pred cccccCceEEEEcCCceEEECCEEEEEEccC--CCceEEEEecCCcccccccHHHHHHHHHHhcCC-ccCCCCchhhhhc
Confidence 1167899999999843210000000222333 568999999999998655555555555554442 4566666655444
No 204
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.27 E-value=9.1e-12 Score=113.83 Aligned_cols=57 Identities=26% Similarity=0.300 Sum_probs=41.5
Q ss_pred CCCEEEEEecCCCCChh--hHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHHhhC
Q 015293 222 KLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 222 ~~p~ilvlNK~Dl~~~~--~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~~~l 278 (409)
..|.++|+||+|+.... ........+.......+++++||++|.|+++|+++|.+.+
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 46789999999986431 2333344444333345899999999999999999998654
No 205
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.27 E-value=1.7e-13 Score=135.67 Aligned_cols=140 Identities=23% Similarity=0.232 Sum_probs=87.4
Q ss_pred EEecCCCChHHHHHHHhCCc------ceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh--hhhHhHHHHHHHHH
Q 015293 116 VLGKPNVGKSTLANQMIGQK------LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMKNVRS 187 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~------~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~--~~~l~~~~~~~~~~ 187 (409)
++|.||+|||||+|+|++.. ...++..|+||++.....+.. .+.++||||+.... ...+.........
T Consensus 165 ~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~~~~- 240 (368)
T 3h2y_A 165 VVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQSLKLIT- 240 (368)
T ss_dssp EEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHHHHHHHS-
T ss_pred EecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHHHHHHhc-
Confidence 99999999999999999863 455789999998877654332 38999999996532 1223222222211
Q ss_pred hhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccC
Q 015293 188 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 262 (409)
Q Consensus 188 ~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~ 262 (409)
.....+.+++++|+..............+.. .+.|+++++||+|...........+.+.+..+. .+.+.++.
T Consensus 241 ~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~--~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~-~l~p~~~~ 312 (368)
T 3h2y_A 241 PTKEIKPMVFQLNEEQTLFFSGLARFDYVSG--GRRAFTCHFSNRLTIHRTKLEKADELYKNHAGD-LLSPPTPE 312 (368)
T ss_dssp CSSCCCCEEEEECTTEEEEETTTEEEEEEES--SSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTT-TBCSSCHH
T ss_pred cccccCceEEEEcCCCEEEEcceEEEEEecC--CCceEEEEecCccccccccHHHHHHHHHHHhCC-ccCCCchh
Confidence 1367899999999843210000001222333 578999999999998777766666666665443 34555544
No 206
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.25 E-value=4.3e-11 Score=119.65 Aligned_cols=184 Identities=17% Similarity=0.190 Sum_probs=112.3
Q ss_pred EEecCCCChHHHHHHHhCC----cceeeecCCCceEEEEEEEEeCCC-eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhc
Q 015293 116 VLGKPNVGKSTLANQMIGQ----KLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 190 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~----~~~~v~~~~~tt~~~~~~~~~~~~-~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 190 (409)
|+|++|+|||||+|.|.|- ...+......+|+... +..... ..+.++|+||+.. ....+...+ +.. .+.
T Consensus 74 lvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~--v~q~~~~~~ltv~D~~g~~~-~~~~~~~~L-~~~--~L~ 147 (413)
T 1tq4_A 74 VTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPNIPNVVFWDLPGIGS-TNFPPDTYL-EKM--KFY 147 (413)
T ss_dssp EEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE--EEECSSCTTEEEEECCCGGG-SSCCHHHHH-HHT--TGG
T ss_pred EECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEE--eccccccCCeeehHhhcccc-hHHHHHHHH-HHc--CCC
Confidence 9999999999999999993 3333223333333211 222222 3689999999853 222232222 211 234
Q ss_pred CcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCC------------ChhhHHHHHHHHH-----hc-CC
Q 015293 191 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI------------KPGEIAKKLEWYE-----KF-TD 252 (409)
Q Consensus 191 ~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~------------~~~~~~~~~~~~~-----~~-~~ 252 (409)
..+..++ ++... ...+...+...+.. .++|+++|+||.|+. ....+...+..+. .. ..
T Consensus 148 ~~~~~~~-lS~G~-~~kqrv~la~aL~~--~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~ 223 (413)
T 1tq4_A 148 EYDFFII-ISATR-FKKNDIDIAKAISM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA 223 (413)
T ss_dssp GCSEEEE-EESSC-CCHHHHHHHHHHHH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred ccCCeEE-eCCCC-ccHHHHHHHHHHHh--cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4566655 77654 45566666666655 578999999999975 1222222222221 21 23
Q ss_pred CceEEEccc--CCCCCHHHHHHHHHhhCCCCCCCC-----CC-ccccCchHHHHHHHHHHHHHHh
Q 015293 253 VDEVIPVSA--KYGHGVEDIRDWILTKLPLGPAYY-----PK-DIVSEHPERFFVGEIIREKIFM 309 (409)
Q Consensus 253 ~~~iv~iSA--~~g~gi~~L~~~L~~~l~~~~~~~-----~~-~~~t~~~~r~~i~EiiRe~i~~ 309 (409)
...++++|+ .++.|+++|.+.|.+.++++++.+ |. ...+.+..+....+.+++..+.
T Consensus 224 ~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~~~~~l~~~~~~~~e~k~~~~~~~i~~~a~~ 288 (413)
T 1tq4_A 224 EPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFA 288 (413)
T ss_dssp SCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCcCCccCHHHHHHHHHHhCccchhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 447899999 667789999999999999988766 32 2233455666677777776654
No 207
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.23 E-value=1.7e-13 Score=136.21 Aligned_cols=177 Identities=22% Similarity=0.216 Sum_probs=111.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCC-----------------eeEEEEeCCCCchhh--hhh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKK--IHM 176 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~-----------------~~i~liDtpG~~~~~--~~~ 176 (409)
|+|+||||||||+|+|+|.+.+.++++|+||.++..+.+...+ ..+.++||||+.... ...
T Consensus 25 iVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~ 104 (392)
T 1ni3_A 25 IVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVG 104 (392)
T ss_dssp EEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSS
T ss_pred EECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHH
Confidence 9999999999999999999886789999999998888776654 468999999986421 112
Q ss_pred HhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCC------CCChh-------hHHHH
Q 015293 177 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD------LIKPG-------EIAKK 243 (409)
Q Consensus 177 l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~D------l~~~~-------~~~~~ 243 (409)
+.. .+...+..+|++++|+|+.... +++.+.+++| .++.. .+...
T Consensus 105 L~~----~fl~~ir~~d~il~Vvd~~~d~------------------~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~ 162 (392)
T 1ni3_A 105 LGN----AFLSHVRAVDAIYQVVRAFDDA------------------EIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKH 162 (392)
T ss_dssp SCH----HHHHHHTTCSEEEEEEECCCTT------------------CSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHHHHHHhccccc------------------eeeeeccccCcchhhhhchhhhHHHHHHHHHHH
Confidence 322 2345577899999999997511 1111223333 21110 11111
Q ss_pred HHHHHhc-CCCceEEEcccCCCCCHHHHHHHHHhhCCCC-CCCCCCccccCchHHHHHHHHHHHHHHhhcCCCCCceeEE
Q 015293 244 LEWYEKF-TDVDEVIPVSAKYGHGVEDIRDWILTKLPLG-PAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQV 321 (409)
Q Consensus 244 ~~~~~~~-~~~~~iv~iSA~~g~gi~~L~~~L~~~l~~~-~~~~~~~~~t~~~~r~~i~EiiRe~i~~~~~~eipys~~v 321 (409)
...+... ...... +-++.+.++.++++.+.+.+..+ +..++ ..+++. + .+++| +++....++++|.+.+
T Consensus 163 ~~~l~~~~~~~g~t--i~sh~~~~~~~l~~~i~~~L~~G~~~~~~-~~~~~~-e----~e~i~-~~~~lt~kp~~y~~Nv 233 (392)
T 1ni3_A 163 LEGLRKITSRGANT--LEMKAKKEEQAIIEKVYQYLTETKQPIRK-GDWSNR-E----VEIIN-SLYLLTAKPVIYLVNM 233 (392)
T ss_dssp HHHHHHTTCCSSCS--SSHHHHHHHHHHHHHHHHHHHTTCSCGGG-SCCCHH-H----HHHHH-TTCCGGGSCEEEEEEC
T ss_pred HHHHHHHHHhcCCc--cccccHHHHHHHHHHHHHHhccCCceeec-CCCCHH-H----HHHHH-HHhhhccCceEEEEEe
Confidence 2222221 100000 01566678888999998888877 66554 333333 2 26677 6666778899998876
Q ss_pred EE
Q 015293 322 NV 323 (409)
Q Consensus 322 ~v 323 (409)
..
T Consensus 234 ~e 235 (392)
T 1ni3_A 234 SE 235 (392)
T ss_dssp CH
T ss_pred cc
Confidence 53
No 208
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.07 E-value=9.5e-10 Score=109.99 Aligned_cols=143 Identities=13% Similarity=0.205 Sum_probs=84.5
Q ss_pred EEecCCCChHHHHHHHhCCccee---eecCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhh-----hhHhHHHHHHH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSI---VTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKI-----HMLDSMMMKNV 185 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~---v~~~~~tt~~~~~~~~~~~~--~~i~liDtpG~~~~~~-----~~l~~~~~~~~ 185 (409)
|+|++|+|||||+|.|+|..+.. ....++.++..+..+....+ ..+.++|+||+..... ..+...+...+
T Consensus 47 LvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~ 126 (427)
T 2qag_B 47 CVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQF 126 (427)
T ss_dssp EECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHH
Confidence 99999999999999999985422 12234555554444444333 3689999999864211 11111111111
Q ss_pred ----HHh---------hcCcc---eEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHh
Q 015293 186 ----RSA---------GINAD---CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK 249 (409)
Q Consensus 186 ----~~~---------~~~aD---villVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~ 249 (409)
... ..+++ +++|++|+.++....+..++..+. .+.|+|+|+||+|.+.+.++..+...+..
T Consensus 127 ~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~---~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~ 203 (427)
T 2qag_B 127 EAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD---SKVNIIPIIAKADAISKSELTKFKIKITS 203 (427)
T ss_dssp HHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC---SCSEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh---hCCCEEEEEcchhccchHHHHHHHHHHHH
Confidence 111 12333 577888988888888877777665 57899999999999988777665554443
Q ss_pred -c-CCCceEEEccc
Q 015293 250 -F-TDVDEVIPVSA 261 (409)
Q Consensus 250 -~-~~~~~iv~iSA 261 (409)
. ..-.+++.+|.
T Consensus 204 ~L~~~gi~I~~is~ 217 (427)
T 2qag_B 204 ELVSNGVQIYQFPT 217 (427)
T ss_dssp HHBTTBCCCCCCC-
T ss_pred HHHHcCCcEEecCC
Confidence 1 12235566664
No 209
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.94 E-value=2.2e-09 Score=103.06 Aligned_cols=103 Identities=21% Similarity=0.363 Sum_probs=71.0
Q ss_pred eEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCC---hHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 160 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE---RIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 160 ~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~---~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
.+.+||| ++.++.+.. .+++++|++|+|+|++++.. ....++. .++. .++|+++|+||+|+.+
T Consensus 64 ~~~iwD~----qer~~~l~~-------~~~~~ad~vilV~D~~~~~~s~~~l~~~l~-~~~~--~~~piilv~NK~DL~~ 129 (301)
T 1u0l_A 64 SGVIENV----LHRKNLLTK-------PHVANVDQVILVVTVKMPETSTYIIDKFLV-LAEK--NELETVMVINKMDLYD 129 (301)
T ss_dssp SEEEEEE----CCCSCEETT-------TTEESCCEEEEEECSSTTCCCHHHHHHHHH-HHHH--TTCEEEEEECCGGGCC
T ss_pred eEEEEEE----ccccceeec-------cccccCCEEEEEEeCCCCCCCHHHHHHHHH-HHHH--CCCCEEEEEeHHHcCC
Confidence 7899999 344454533 46899999999999997652 2233333 3333 5799999999999987
Q ss_pred hhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHHHHHHHh
Q 015293 237 PGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILT 276 (409)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~~ 276 (409)
...+.+...+........+++++||++|.|+++++..+..
T Consensus 130 ~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 130 EDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred chhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 5543222222222111157999999999999999998864
No 210
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.90 E-value=6.1e-09 Score=98.45 Aligned_cols=125 Identities=18% Similarity=0.315 Sum_probs=74.5
Q ss_pred EEecCCCChHHHHHHHhCCcceeee-------cCCCceEEEEEEEEe-CCC--eeEEEEeCCCCchhhh-----hhHhHH
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVT-------NKPQTTRHRILGICS-GPE--YQMILYDTPGIIEKKI-----HMLDSM 180 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~-------~~~~tt~~~~~~~~~-~~~--~~i~liDtpG~~~~~~-----~~l~~~ 180 (409)
|+|++|+|||||+|.|+|....... +.+.++.....+.+. ..+ ..+.++|+||+..... ..+...
T Consensus 7 lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i~~~ 86 (270)
T 3sop_A 7 VVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPIEKY 86 (270)
T ss_dssp EEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHHHHH
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHHHHH
Confidence 9999999999999999986433211 112222222222221 111 3689999999854211 122222
Q ss_pred HHHHHHH--------------hhcCcceEEEEeeCC-CCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHH
Q 015293 181 MMKNVRS--------------AGINADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 243 (409)
Q Consensus 181 ~~~~~~~--------------~~~~aDvillVvD~~-~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~ 243 (409)
+...... .+..++++++++|.. ++..+.+..++..+.. . .++|+|+||+|.+...++...
T Consensus 87 ~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~--~-~~vI~Vi~K~D~lt~~e~~~~ 161 (270)
T 3sop_A 87 INEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSK--V-VNIIPVIAKADTMTLEEKSEF 161 (270)
T ss_dssp HHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHT--T-SEEEEEETTGGGSCHHHHHHH
T ss_pred HHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHh--c-CcEEEEEeccccCCHHHHHHH
Confidence 2222111 233468899999965 6777777777776665 4 899999999999987665443
No 211
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.83 E-value=2.4e-09 Score=105.00 Aligned_cols=118 Identities=14% Similarity=0.108 Sum_probs=78.0
Q ss_pred EEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCC------------ChHHHHHHHHhcc-
Q 015293 152 GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP------------ERIDEILEEGVGD- 218 (409)
Q Consensus 152 ~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~------------~~~~~~l~~~l~~- 218 (409)
..+..++..+.+|||+| ++.++.+ +..++.+++++|||+|+++.. .....++......
T Consensus 186 ~~~~~~~~~l~iwDt~G--Qe~~r~~-------w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~ 256 (353)
T 1cip_A 186 THFTFKDLHFKMFDVGG--QRSERKK-------WIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256 (353)
T ss_dssp EEEEETTEEEEEEEECC--SGGGGGG-------GGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred EEEeeCCeeEEEEeCCC--chhhhHH-------HHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc
Confidence 34556788999999999 4444444 445689999999999998732 1222333333332
Q ss_pred CCCCCCEEEEEecCCCCChh-----------------hHHHHHHHHH----hc-----CCCceEEEcccCCCCCHHHHHH
Q 015293 219 HKDKLPILLVLNKKDLIKPG-----------------EIAKKLEWYE----KF-----TDVDEVIPVSAKYGHGVEDIRD 272 (409)
Q Consensus 219 ~~~~~p~ilvlNK~Dl~~~~-----------------~~~~~~~~~~----~~-----~~~~~iv~iSA~~g~gi~~L~~ 272 (409)
...+.|+||++||+|+.... .......+.. .. .....+++|||++|.||.++++
T Consensus 257 ~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~ 336 (353)
T 1cip_A 257 WFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFD 336 (353)
T ss_dssp GGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred cccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHH
Confidence 12579999999999984211 1222222222 11 1234689999999999999999
Q ss_pred HHHhhC
Q 015293 273 WILTKL 278 (409)
Q Consensus 273 ~L~~~l 278 (409)
++.+.+
T Consensus 337 ~v~~~i 342 (353)
T 1cip_A 337 AVTDVI 342 (353)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987654
No 212
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.81 E-value=5.5e-10 Score=106.33 Aligned_cols=54 Identities=33% Similarity=0.524 Sum_probs=35.2
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 172 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~ 172 (409)
++|.||||||||+|+|++.+.+.+++.|++|++...... +..+.++||||+...
T Consensus 125 ~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 125 IIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV---GKELELLDTPGILWP 178 (282)
T ss_dssp EEESTTSSHHHHHHHHHTSCCC------------CCEEE---TTTEEEEECCCCCCS
T ss_pred EEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe---CCCEEEEECcCcCCC
Confidence 999999999999999999998889999999998764332 347899999999753
No 213
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.74 E-value=6.8e-09 Score=102.15 Aligned_cols=117 Identities=15% Similarity=0.067 Sum_probs=73.5
Q ss_pred EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCC------------ChHHHHHHHHhcc-C
Q 015293 153 ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP------------ERIDEILEEGVGD-H 219 (409)
Q Consensus 153 ~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~------------~~~~~~l~~~l~~-~ 219 (409)
.+..++..+.+||||| +..+. ..+..++.+++++|||+|+++.. .....++...... .
T Consensus 195 ~~~~~~~~l~i~Dt~G--q~~~r-------~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~ 265 (362)
T 1zcb_A 195 DFEIKNVPFKMVDVGG--QRSER-------KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV 265 (362)
T ss_dssp EEEETTEEEEEEEECC----------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred EeeeCCeEEEEEeccc--hhhhh-------hhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh
Confidence 3555778999999999 43332 23455688999999999999731 1222333333332 1
Q ss_pred CCCCCEEEEEecCCCCCh------------------hhHHHHHHHH----Hhc-----CCCceEEEcccCCCCCHHHHHH
Q 015293 220 KDKLPILLVLNKKDLIKP------------------GEIAKKLEWY----EKF-----TDVDEVIPVSAKYGHGVEDIRD 272 (409)
Q Consensus 220 ~~~~p~ilvlNK~Dl~~~------------------~~~~~~~~~~----~~~-----~~~~~iv~iSA~~g~gi~~L~~ 272 (409)
..+.|+||++||+|+... ........++ ... .....+++|||++|.||.++++
T Consensus 266 ~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~ 345 (362)
T 1zcb_A 266 FSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFR 345 (362)
T ss_dssp GTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHH
T ss_pred hCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHH
Confidence 257899999999998521 1222222222 111 1224678999999999999999
Q ss_pred HHHhhC
Q 015293 273 WILTKL 278 (409)
Q Consensus 273 ~L~~~l 278 (409)
++.+.+
T Consensus 346 ~v~~~i 351 (362)
T 1zcb_A 346 DVKDTI 351 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987644
No 214
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.72 E-value=3.4e-08 Score=93.85 Aligned_cols=102 Identities=21% Similarity=0.237 Sum_probs=71.9
Q ss_pred EeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHH
Q 015293 164 YDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 243 (409)
Q Consensus 164 iDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~ 243 (409)
-+.||+... ..+++...+..+|++++|+|+..+.......+.+.+ .++|.++|+||+|+.+.......
T Consensus 4 ~w~PGhm~k--------a~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~~~~~~~ 71 (282)
T 1puj_A 4 QWFPGHMAK--------ARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----KNKPRIMLLNKADKADAAVTQQW 71 (282)
T ss_dssp -----CTTH--------HHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC----SSSCEEEEEECGGGSCHHHHHHH
T ss_pred cCCchHHHH--------HHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH----CCCCEEEEEECcccCCHHHHHHH
Confidence 357885332 235566778999999999999988755434455544 46899999999999986555555
Q ss_pred HHHHHhcCCCceEEEcccCCCCCHHHHHHHHHhhCC
Q 015293 244 LEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 244 ~~~~~~~~~~~~iv~iSA~~g~gi~~L~~~L~~~l~ 279 (409)
.+++... ++ +++++||++|.|+++|++.+.+.++
T Consensus 72 ~~~~~~~-g~-~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 72 KEHFENQ-GI-RSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HHHHHTT-TC-CEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHHHHhc-CC-cEEEEECCCcccHHHHHHHHHHHHH
Confidence 5555432 23 7899999999999999998877653
No 215
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.64 E-value=4e-08 Score=97.72 Aligned_cols=117 Identities=9% Similarity=0.086 Sum_probs=75.3
Q ss_pred EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCC----------CC--ChHHHHHHHHhcc-C
Q 015293 153 ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK----------AP--ERIDEILEEGVGD-H 219 (409)
Q Consensus 153 ~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~----------~~--~~~~~~l~~~l~~-~ 219 (409)
.+..++..+.+|||+| ++.+..+ +..+++.++++|||+|+++ .. .....++...... .
T Consensus 211 ~~~~~~v~l~iwDtaG--Qe~~r~~-------w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~ 281 (402)
T 1azs_C 211 KFQVDKVNFHMFDVGG--QRDERRK-------WIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW 281 (402)
T ss_dssp EEEETTEEEEEEEECC--SGGGGGG-------GGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTT
T ss_pred EeecCCccceecccch--hhhhhhh-------hHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhccc
Confidence 3455678999999999 5554444 4456889999999999987 21 2223344343332 1
Q ss_pred CCCCCEEEEEecCCCCChhh--------------------------------HHHHHHHH----Hhc-------CCCceE
Q 015293 220 KDKLPILLVLNKKDLIKPGE--------------------------------IAKKLEWY----EKF-------TDVDEV 256 (409)
Q Consensus 220 ~~~~p~ilvlNK~Dl~~~~~--------------------------------~~~~~~~~----~~~-------~~~~~i 256 (409)
..+.|++||+||+|+..... ......++ ... .....+
T Consensus 282 ~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~ 361 (402)
T 1azs_C 282 LRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYP 361 (402)
T ss_dssp CSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEE
T ss_pred CCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEE
Confidence 25789999999999842111 11111111 111 012356
Q ss_pred EEcccCCCCCHHHHHHHHHhhC
Q 015293 257 IPVSAKYGHGVEDIRDWILTKL 278 (409)
Q Consensus 257 v~iSA~~g~gi~~L~~~L~~~l 278 (409)
+.|||+++.||.++|.++.+.+
T Consensus 362 ~~TSA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 362 HFTCAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp EECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEeecCcCHHHHHHHHHHHH
Confidence 7899999999999999987644
No 216
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.63 E-value=2.2e-08 Score=104.15 Aligned_cols=54 Identities=30% Similarity=0.448 Sum_probs=40.8
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEE-------eCCCeeEEEEeCCCCch
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC-------SGPEYQMILYDTPGIIE 171 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~-------~~~~~~i~liDtpG~~~ 171 (409)
|+|.||||||||+|+|+|..... +.+++|++...++. ...+..+.|+||||+..
T Consensus 43 ivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 43 IVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp EEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred EECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 99999999999999999988542 45555544433332 23567899999999975
No 217
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.62 E-value=2.4e-08 Score=97.88 Aligned_cols=113 Identities=16% Similarity=0.147 Sum_probs=70.0
Q ss_pred CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCC----------CCC--ChHHHHHHHHhcc-CCCCC
Q 015293 157 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDAC----------KAP--ERIDEILEEGVGD-HKDKL 223 (409)
Q Consensus 157 ~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~----------~~~--~~~~~~l~~~l~~-~~~~~ 223 (409)
+...+.+|||+| ++.+..+ +..+++.++++|+|+|.+ +.. .....++...... ...+.
T Consensus 181 ~~v~l~iwDtaG--Qe~~r~~-------~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~ 251 (354)
T 2xtz_A 181 SGEVYRLFDVGG--QRNERRK-------WIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 251 (354)
T ss_dssp ---EEEEEEECC--STTGGGG-------TGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSC
T ss_pred cceeeEEEECCC--chhhhHH-------HHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCC
Confidence 347899999999 5555444 445688999999999987 211 1222233333322 12578
Q ss_pred CEEEEEecCCCCChh-----------------------hHHHHHHHHHh----c----------CCCceEEEcccCCCCC
Q 015293 224 PILLVLNKKDLIKPG-----------------------EIAKKLEWYEK----F----------TDVDEVIPVSAKYGHG 266 (409)
Q Consensus 224 p~ilvlNK~Dl~~~~-----------------------~~~~~~~~~~~----~----------~~~~~iv~iSA~~g~g 266 (409)
|++||+||+|+.... ...+...++.. . .....++.|||+++.|
T Consensus 252 piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~n 331 (354)
T 2xtz_A 252 SFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKL 331 (354)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHH
T ss_pred eEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchh
Confidence 999999999984211 11222222111 0 1223468999999999
Q ss_pred HHHHHHHHHhhC
Q 015293 267 VEDIRDWILTKL 278 (409)
Q Consensus 267 i~~L~~~L~~~l 278 (409)
|.++|+++.+.+
T Consensus 332 V~~vF~~v~~~I 343 (354)
T 2xtz_A 332 VKKTFKLVDETL 343 (354)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987643
No 218
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.58 E-value=1.8e-07 Score=94.03 Aligned_cols=142 Identities=18% Similarity=0.240 Sum_probs=80.5
Q ss_pred EEecCCCChHHHHHHHh------CCcceeeecCCCce-------------EEEEEEE----------------EeCCCee
Q 015293 116 VLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-------------RHRILGI----------------CSGPEYQ 160 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~------~~~~~~v~~~~~tt-------------~~~~~~~----------------~~~~~~~ 160 (409)
++|.+|+||||+++.|. |.++..+...+... ....... ....++.
T Consensus 105 ivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~D 184 (443)
T 3dm5_A 105 MVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVD 184 (443)
T ss_dssp EECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHTTCS
T ss_pred EECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999997 55655544322200 0000000 0113478
Q ss_pred EEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhH
Q 015293 161 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 240 (409)
Q Consensus 161 i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~ 240 (409)
++|+||||..+... .+-..+ ..... ...+|.+++|+|++.+.... ........ .-.+..+|+||+|.......
T Consensus 185 vVIIDTaGrl~~d~-~lm~el-~~i~~-~~~pd~vlLVvDA~~gq~a~--~~a~~f~~--~~~i~gVIlTKlD~~~~gG~ 257 (443)
T 3dm5_A 185 IIIVDTAGRHKEDK-ALIEEM-KQISN-VIHPHEVILVIDGTIGQQAY--NQALAFKE--ATPIGSIIVTKLDGSAKGGG 257 (443)
T ss_dssp EEEEECCCCSSCCH-HHHHHH-HHHHH-HHCCSEEEEEEEGGGGGGHH--HHHHHHHH--SCTTEEEEEECCSSCSSHHH
T ss_pred EEEEECCCcccchH-HHHHHH-HHHHH-hhcCceEEEEEeCCCchhHH--HHHHHHHh--hCCCeEEEEECCCCcccccH
Confidence 99999999754222 222222 22222 34689999999998754322 12222222 33567799999998754332
Q ss_pred HHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 241 AKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 241 ~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
....... .+ .|+.+++. |+++++|
T Consensus 258 --~ls~~~~-~g-~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 258 --ALSAVAA-TG-APIKFIGT--GEKIDDI 281 (443)
T ss_dssp --HHHHHHT-TC-CCEEEEEC--SSSTTCE
T ss_pred --HHHHHHH-HC-CCEEEEEc--CCChHHh
Confidence 1222222 22 36777764 7877664
No 219
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.56 E-value=3e-07 Score=82.84 Aligned_cols=96 Identities=11% Similarity=0.032 Sum_probs=66.0
Q ss_pred HHHhhcCcceEEEEeeCCCCC-ChHHHHH---HHHhccC--CCCCCEEEEEecC-CCCChhhHHHHHHHHH--hcCCCce
Q 015293 185 VRSAGINADCIVVLVDACKAP-ERIDEIL---EEGVGDH--KDKLPILLVLNKK-DLIKPGEIAKKLEWYE--KFTDVDE 255 (409)
Q Consensus 185 ~~~~~~~aDvillVvD~~~~~-~~~~~~l---~~~l~~~--~~~~p~ilvlNK~-Dl~~~~~~~~~~~~~~--~~~~~~~ 255 (409)
++.++..+|++|||||+++.. .....++ ..++... ..+.|++|+.||. |+...-...++.+.+. .....+.
T Consensus 119 Wr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~R~W~ 198 (227)
T 3l82_B 119 IQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWL 198 (227)
T ss_dssp HHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEE
T ss_pred HHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCCCCEE
Confidence 567789999999999998764 1233444 3334331 1578999999995 6754333333332221 1234568
Q ss_pred EEEcccCCCCCHHHHHHHHHhhCCC
Q 015293 256 VIPVSAKYGHGVEDIRDWILTKLPL 280 (409)
Q Consensus 256 iv~iSA~~g~gi~~L~~~L~~~l~~ 280 (409)
+.+|||++|+|+.+-++||.+.+..
T Consensus 199 Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 199 VQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp EEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred EEEeECCCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999987753
No 220
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.56 E-value=1.7e-09 Score=108.97 Aligned_cols=237 Identities=19% Similarity=0.202 Sum_probs=113.3
Q ss_pred EEecCCCChHHHHHHHh-------CCcceeeecCCCceE--------------EEEEE---------------EEeCCCe
Q 015293 116 VLGKPNVGKSTLANQMI-------GQKLSIVTNKPQTTR--------------HRILG---------------ICSGPEY 159 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~-------~~~~~~v~~~~~tt~--------------~~~~~---------------~~~~~~~ 159 (409)
++|.+|+||||++..|. |.++..+...+.... +.... .....++
T Consensus 105 ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~~~~ 184 (433)
T 2xxa_A 105 MAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFY 184 (433)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHHTTC
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHhCCC
Confidence 88999999999999987 666665544432110 00000 0012467
Q ss_pred eEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCC-EEEEEecCCCCChh
Q 015293 160 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPG 238 (409)
Q Consensus 160 ~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilvlNK~Dl~~~~ 238 (409)
.++|+||||..+.. ..+...+ ..+ ..+..+|.+++|+|+..+... .... .... ...+ .-+|+||+|.....
T Consensus 185 D~VIIDTpG~l~~~-~~l~~~L-~~~-~~~~~p~~vllVvda~~g~~~-~~~~-~~f~---~~l~i~gvVlnK~D~~~~~ 256 (433)
T 2xxa_A 185 DVLLVDTAGRLHVD-EAMMDEI-KQV-HASINPVETLFVVDAMTGQDA-ANTA-KAFN---EALPLTGVVLTKVDGDARG 256 (433)
T ss_dssp SEEEEECCCCCTTC-HHHHHHH-HHH-HHHSCCSEEEEEEETTBCTTH-HHHH-HHHH---HHSCCCCEEEECTTSSSCC
T ss_pred CEEEEECCCccccc-HHHHHHH-HHH-HHhhcCcceeEEeecchhHHH-HHHH-HHHh---ccCCCeEEEEecCCCCccH
Confidence 89999999965421 1221211 111 224478999999999866332 2222 2121 2234 34789999976432
Q ss_pred -hHHHHHHHHHhc-------CCCceE------EEcccCCCCC-HHHHHHHHHhhCCCCCCCCCCccccCchHHHHHH-HH
Q 015293 239 -EIAKKLEWYEKF-------TDVDEV------IPVSAKYGHG-VEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVG-EI 302 (409)
Q Consensus 239 -~~~~~~~~~~~~-------~~~~~i------v~iSA~~g~g-i~~L~~~L~~~l~~~~~~~~~~~~t~~~~r~~i~-Ei 302 (409)
............ .....+ ..+|+..|.| +..|++.+.+.... +.......+.... ++
T Consensus 257 g~~l~i~~~~~~Pi~~iG~ge~v~dl~~f~p~~~a~~l~g~gD~~~Lie~a~~~~~~-------~~~~~l~~k~~~~~~f 329 (433)
T 2xxa_A 257 GAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDR-------AQAEKLASKLKKGDGF 329 (433)
T ss_dssp THHHHHHHHHCCCEEEEECSSSSSCEEECCHHHHHHHHHCCCTTHHHHHHHHHHHHH-------HHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHCCCeEEEecCCCchhhhhcChHHHHHHHhCccchHHHHHHHHHhhhh-------hhhHHHHHHHhcCCCC
Confidence 222222222100 000111 1134455555 66666665443210 0000011111111 22
Q ss_pred HHHHHHhhcC------------CCCCceeEEEEEEEE--ecCCCeeEEEEEEE----EeeCCcceEEeecCCchHHHHHH
Q 015293 303 IREKIFMQYR------------NEVPYACQVNVVSYK--TRPTAKDFIQVEIV----VEKNSQKIILIGKGGKALKLLAT 364 (409)
Q Consensus 303 iRe~i~~~~~------------~eipys~~v~v~~~~--~~~~~~~~i~~~i~----v~~~~~~~iliG~~G~~ik~i~~ 364 (409)
.++.++..++ .++|+...+. ..++ ..+.....+.+.+. .||++++.| +|+++++|+.
T Consensus 330 ~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~-~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~----~~sr~~ria~ 404 (433)
T 2xxa_A 330 DLNDFLEQLRQMKNMGGMASLMGKLPGMGQIP-DNVKSQMDDKVLVRMEAIINSMTMKERAKPEII----KGSRKRRIAA 404 (433)
T ss_dssp CHHHHHHHHHHHHSCSSCHHHHCC----------------CHHHHHHHHHHHHTSCHHHHHCGGGC----CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCchhhhhcCcCcchhh-hhhhccccHHHHHHHHHHHHcCCHHHhcCcccc----CHHHHHHHHc
Confidence 2333333333 3799887642 2232 11111123444455 788888887 7999999999
Q ss_pred HHHHHHHH
Q 015293 365 AARLDIED 372 (409)
Q Consensus 365 ~ar~~l~~ 372 (409)
.|+..+++
T Consensus 405 gsg~~~~~ 412 (433)
T 2xxa_A 405 GSGMQVQD 412 (433)
T ss_dssp HHTCCHHH
T ss_pred cCCCCHHH
Confidence 99766554
No 221
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.55 E-value=1.6e-07 Score=90.05 Aligned_cols=85 Identities=24% Similarity=0.377 Sum_probs=61.8
Q ss_pred HhhcCcceEEEEeeCCCCC-Ch--HHHHHHHHhccCCCCCCEEEEEecCCCCChhh---HHHHHHHHHhcCCCceEEEcc
Q 015293 187 SAGINADCIVVLVDACKAP-ER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFTDVDEVIPVS 260 (409)
Q Consensus 187 ~~~~~aDvillVvD~~~~~-~~--~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~---~~~~~~~~~~~~~~~~iv~iS 260 (409)
.++.++|++++|+|++++. .. .+.++. .+.. .++|+++|+||+|+.+... .......+... ++ +++++|
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~-~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~-g~-~~~~~S 149 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLV-VYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDA-GY-DVLKVS 149 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHH-HHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT-TC-EEEECC
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHH-HHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHC-CC-eEEEEE
Confidence 3589999999999999764 22 233443 3333 6799999999999987642 33334444433 33 799999
Q ss_pred cCCCCCHHHHHHHHHh
Q 015293 261 AKYGHGVEDIRDWILT 276 (409)
Q Consensus 261 A~~g~gi~~L~~~L~~ 276 (409)
|++|.|+++|++.+..
T Consensus 150 A~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 150 AKTGEGIDELVDYLEG 165 (302)
T ss_dssp TTTCTTHHHHHHHTTT
T ss_pred CCCCCCHHHHHhhccC
Confidence 9999999999988764
No 222
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.54 E-value=7.6e-08 Score=93.59 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=52.4
Q ss_pred EEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCC---------CCCh---HHHHHHHHhcc
Q 015293 151 LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK---------APER---IDEILEEGVGD 218 (409)
Q Consensus 151 ~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~---------~~~~---~~~~l~~~l~~ 218 (409)
...+..++..+.+|||+| ++.++ ..+..++++++++|||+|+++ .... ...++...+..
T Consensus 153 ~~~~~~~~v~l~iwDtaG--Qe~~R-------~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~ 223 (340)
T 4fid_A 153 EYDFVVKDIPFHLIDVGG--QRSER-------KXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTN 223 (340)
T ss_dssp EEEEESSSCEEEEEECCS--CHHHH-------HHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHC
T ss_pred EEEEEeeeeeeccccCCC--ccccc-------ccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhh
Confidence 344566789999999999 54433 335677899999999999972 1111 22333333322
Q ss_pred -CCCCCCEEEEEecCCCCC
Q 015293 219 -HKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 219 -~~~~~p~ilvlNK~Dl~~ 236 (409)
...+.|++|++||+|+..
T Consensus 224 ~~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 224 EFLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp GGGTTSEEEEEEECHHHHH
T ss_pred hccCCCeEEEEEECchhhh
Confidence 125789999999999853
No 223
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.53 E-value=1.1e-07 Score=92.01 Aligned_cols=119 Identities=13% Similarity=0.074 Sum_probs=75.6
Q ss_pred EEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCC-------CC--CCh---HHHHHHHHhcc
Q 015293 151 LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDAC-------KA--PER---IDEILEEGVGD 218 (409)
Q Consensus 151 ~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~-------~~--~~~---~~~~l~~~l~~ 218 (409)
...+..++..+.+|||+| ++.++.+ +..++++++++|||+|.+ +. ... ...++...+..
T Consensus 159 ~~~~~~~~v~l~iwDtgG--Qe~~R~~-------w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~ 229 (327)
T 3ohm_A 159 EYPFDLQSVIFRMVDVGG--QRSERRK-------WIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY 229 (327)
T ss_dssp EEEEEETTEEEEEEEECC--SHHHHTT-------GGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS
T ss_pred EEEEEeeceeeEEEEcCC--chhHHHH-------HHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh
Confidence 334556789999999999 5444333 556789999999999765 21 111 22333333332
Q ss_pred -CCCCCCEEEEEecCCCCChh------------------hHHHHHHHHH----hc----CCCceEEEcccCCCCCHHHHH
Q 015293 219 -HKDKLPILLVLNKKDLIKPG------------------EIAKKLEWYE----KF----TDVDEVIPVSAKYGHGVEDIR 271 (409)
Q Consensus 219 -~~~~~p~ilvlNK~Dl~~~~------------------~~~~~~~~~~----~~----~~~~~iv~iSA~~g~gi~~L~ 271 (409)
...+.|++|++||+|+.... .......++. .. .....++.|||+++.||..+|
T Consensus 230 ~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF 309 (327)
T 3ohm_A 230 PWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVF 309 (327)
T ss_dssp GGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHH
T ss_pred hccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHH
Confidence 12579999999999985321 2222222221 11 112356889999999999999
Q ss_pred HHHHhhC
Q 015293 272 DWILTKL 278 (409)
Q Consensus 272 ~~L~~~l 278 (409)
..+.+.+
T Consensus 310 ~~v~~~I 316 (327)
T 3ohm_A 310 AAVKDTI 316 (327)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987654
No 224
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.47 E-value=2.7e-07 Score=91.01 Aligned_cols=91 Identities=24% Similarity=0.261 Sum_probs=60.3
Q ss_pred HHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChh----hHHHHHHHHHhcCCC--ceEEE
Q 015293 185 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--DEVIP 258 (409)
Q Consensus 185 ~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~----~~~~~~~~~~~~~~~--~~iv~ 258 (409)
.....+.+|++++|+|++++.......+.+.+ .++|+++|+||+|+.+.. .+...........++ .+++.
T Consensus 63 l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~ 138 (368)
T 3h2y_A 63 LNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFL 138 (368)
T ss_dssp HHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEE
T ss_pred HHHHhccCcEEEEEEECCCCcccHHHHHHHHh----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEE
Confidence 44456688899999999874321111222222 478999999999997543 222222222222333 37899
Q ss_pred cccCCCCCHHHHHHHHHhhCC
Q 015293 259 VSAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 259 iSA~~g~gi~~L~~~L~~~l~ 279 (409)
+||++|.|+++|++.|.+...
T Consensus 139 iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 139 ISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp CCTTTCTTHHHHHHHHHHHHT
T ss_pred EeCCCCcCHHHHHhhhhhhcc
Confidence 999999999999999987653
No 225
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.43 E-value=4.6e-07 Score=89.35 Aligned_cols=90 Identities=23% Similarity=0.195 Sum_probs=62.3
Q ss_pred HHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChh----hHHHHHHHHHhcCCC--ceEEEc
Q 015293 186 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--DEVIPV 259 (409)
Q Consensus 186 ~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~----~~~~~~~~~~~~~~~--~~iv~i 259 (409)
..+...++++++|+|++++.......+.+.+ .++|+++|+||+|+.+.. .+......+....++ .+++.+
T Consensus 66 ~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~i 141 (369)
T 3ec1_A 66 HRIGESKALVVNIVDIFDFNGSFIPGLPRFA----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLV 141 (369)
T ss_dssp HHHHHHCCEEEEEEETTCSGGGCCSSHHHHC----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEEC
T ss_pred HHhhccCcEEEEEEECCCCCCchhhHHHHHh----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEE
Confidence 3345788999999999987643333333333 478999999999998642 222222222222333 478999
Q ss_pred ccCCCCCHHHHHHHHHhhCC
Q 015293 260 SAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 260 SA~~g~gi~~L~~~L~~~l~ 279 (409)
||++|.|+++|++.|.+...
T Consensus 142 SA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 142 SAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp BTTTTBTHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHhhcc
Confidence 99999999999999987654
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.42 E-value=4.9e-08 Score=91.82 Aligned_cols=53 Identities=36% Similarity=0.501 Sum_probs=35.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCch
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 171 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~ 171 (409)
++|.||+|||||+|+|.+.....+++.+++|+...... . +..+.+|||||+..
T Consensus 104 ~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 104 IVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS--L-ENGVKILDTPGILY 156 (262)
T ss_dssp EEESTTSSHHHHHHHHHTTCC----------CCSCEEE--C-TTSCEEESSCEECC
T ss_pred EeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE--e-CCCEEEEECCCccc
Confidence 99999999999999999999877888999988754322 2 24789999999865
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.36 E-value=2.1e-07 Score=87.44 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=62.3
Q ss_pred HHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCceEEEcccCC
Q 015293 184 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 263 (409)
Q Consensus 184 ~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~ 263 (409)
.+...+..+|++++|+|+..+.......+. ++ ++|.++|+||+|+.+.........++... ++ ++ ++||++
T Consensus 14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-----~k~~iivlNK~DL~~~~~~~~~~~~~~~~-g~-~v-~iSa~~ 84 (262)
T 3cnl_A 14 QIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-----RKETIILLNKVDIADEKTTKKWVEFFKKQ-GK-RV-ITTHKG 84 (262)
T ss_dssp HHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-----TSEEEEEEECGGGSCHHHHHHHHHHHHHT-TC-CE-EECCTT
T ss_pred HHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-----CCCcEEEEECccCCCHHHHHHHHHHHHHc-CC-eE-EEECCC
Confidence 455668899999999999987644322221 11 68999999999999865555555555442 33 56 999999
Q ss_pred CCCHHHHHHHHHhh
Q 015293 264 GHGVEDIRDWILTK 277 (409)
Q Consensus 264 g~gi~~L~~~L~~~ 277 (409)
|.|+++|++.|...
T Consensus 85 ~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 85 EPRKVLLKKLSFDR 98 (262)
T ss_dssp SCHHHHHHHHCCCT
T ss_pred CcCHHHHHHHHHHh
Confidence 99999999887654
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.32 E-value=8.9e-07 Score=88.83 Aligned_cols=140 Identities=19% Similarity=0.204 Sum_probs=76.4
Q ss_pred EEecCCCChHHHHHHHh------CCcceeeecCC----------------CceEEEEE-----------E--EEeCCCee
Q 015293 116 VLGKPNVGKSTLANQMI------GQKLSIVTNKP----------------QTTRHRIL-----------G--ICSGPEYQ 160 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~------~~~~~~v~~~~----------------~tt~~~~~-----------~--~~~~~~~~ 160 (409)
++|.+|+||||++..|. |.++..+...+ +....... . .....++.
T Consensus 102 lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~~~~~D 181 (433)
T 3kl4_A 102 LVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMD 181 (433)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTTTTTCS
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999997 55554433211 11000000 0 01123678
Q ss_pred EEEEeCCCCch--hhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChh
Q 015293 161 MILYDTPGIIE--KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 238 (409)
Q Consensus 161 i~liDtpG~~~--~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~ 238 (409)
++++||||..+ ... .+-..+ ..+...+ .+|.+++|+|++.+.... ........ .-.+..+|+||+|.....
T Consensus 182 vvIIDTaGr~~~~~d~-~lm~el-~~i~~~~-~pd~vlLVlDa~~gq~a~--~~a~~f~~--~~~~~gVIlTKlD~~a~~ 254 (433)
T 3kl4_A 182 IIIVDTAGRHGYGEET-KLLEEM-KEMYDVL-KPDDVILVIDASIGQKAY--DLASRFHQ--ASPIGSVIITKMDGTAKG 254 (433)
T ss_dssp EEEEEECCCSSSCCTT-HHHHHH-HHHHHHH-CCSEEEEEEEGGGGGGGH--HHHHHHHH--HCSSEEEEEECGGGCSCH
T ss_pred EEEEECCCCccccCCH-HHHHHH-HHHHHhh-CCcceEEEEeCccchHHH--HHHHHHhc--ccCCcEEEEecccccccc
Confidence 99999999643 221 222222 2222333 579999999998753322 12222221 235688999999986433
Q ss_pred hHHHHHHHHHhcCCCceEEEcccCCCCCHH
Q 015293 239 EIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 268 (409)
Q Consensus 239 ~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~ 268 (409)
.. .+...... + .|+.+++. |++++
T Consensus 255 G~--als~~~~~-g-~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 255 GG--ALSAVVAT-G-ATIKFIGT--GEKID 278 (433)
T ss_dssp HH--HHHHHHHH-T-CEEEEEEC--CSSSS
T ss_pred hH--HHHHHHHH-C-CCEEEEEC--CCChH
Confidence 21 12222221 2 37777775 76664
No 229
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.28 E-value=1.7e-06 Score=81.54 Aligned_cols=96 Identities=11% Similarity=0.044 Sum_probs=65.1
Q ss_pred HHHhhcCcceEEEEeeCCCCCC-hHHHHHH---HHhccC--CCCCCEEEEEec-CCCCChhhHHHHHHHHH--hcCCCce
Q 015293 185 VRSAGINADCIVVLVDACKAPE-RIDEILE---EGVGDH--KDKLPILLVLNK-KDLIKPGEIAKKLEWYE--KFTDVDE 255 (409)
Q Consensus 185 ~~~~~~~aDvillVvD~~~~~~-~~~~~l~---~~l~~~--~~~~p~ilvlNK-~Dl~~~~~~~~~~~~~~--~~~~~~~ 255 (409)
++.++..+|++|||||+++... ....++. .++... ..+.|++|+.|| .|+...-...++.+.+. .....+.
T Consensus 204 Wr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~r~W~ 283 (312)
T 3l2o_B 204 IQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWL 283 (312)
T ss_dssp HHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEE
T ss_pred HHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccCCCcEE
Confidence 5677899999999999987652 1222222 223221 157899999997 58865433333333221 1234568
Q ss_pred EEEcccCCCCCHHHHHHHHHhhCCC
Q 015293 256 VIPVSAKYGHGVEDIRDWILTKLPL 280 (409)
Q Consensus 256 iv~iSA~~g~gi~~L~~~L~~~l~~ 280 (409)
+.+|||++|+|+.+-++||.+.+..
T Consensus 284 Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 284 VQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp EEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred EEecccCCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999998753
No 230
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.07 E-value=7e-06 Score=86.12 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=43.7
Q ss_pred eeEEEEeCCCCchhhhhh----HhHHHHHHHHHhhcC-cceEEEEeeCCCCC-ChHHHHHHHHhccCCCCCCEEEEEecC
Q 015293 159 YQMILYDTPGIIEKKIHM----LDSMMMKNVRSAGIN-ADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKK 232 (409)
Q Consensus 159 ~~i~liDtpG~~~~~~~~----l~~~~~~~~~~~~~~-aDvillVvD~~~~~-~~~~~~l~~~l~~~~~~~p~ilvlNK~ 232 (409)
..+.++|.||+...+... ....+...+..++.. ..++++++++.... ......+...+.. .+.+.|+|+||.
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~--~g~rtI~VlTK~ 224 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDP--EGDRTIGILTKP 224 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCS--SCCSEEEEEECG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhh--cCCceEEEecch
Confidence 569999999976532221 233334444454444 46677777654333 2222334444443 578999999999
Q ss_pred CCCChh
Q 015293 233 DLIKPG 238 (409)
Q Consensus 233 Dl~~~~ 238 (409)
|++...
T Consensus 225 Dlv~~g 230 (608)
T 3szr_A 225 DLVDKG 230 (608)
T ss_dssp GGSSSS
T ss_pred hhcCcc
Confidence 998543
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.04 E-value=8.9e-06 Score=77.69 Aligned_cols=141 Identities=18% Similarity=0.268 Sum_probs=76.2
Q ss_pred EEecCCCChHHHHHHHh------CCcceeeecCCCce-----------E---EEEEE-------------E--EeCCCee
Q 015293 116 VLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-----------R---HRILG-------------I--CSGPEYQ 160 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~------~~~~~~v~~~~~tt-----------~---~~~~~-------------~--~~~~~~~ 160 (409)
++|.+|+||||++..|. |.++..+...+... + +.... + ....++.
T Consensus 103 i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~~~D 182 (297)
T 1j8m_F 103 LVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKME 182 (297)
T ss_dssp EECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHTTCS
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhCCCC
Confidence 89999999999999986 44544333322110 0 00000 0 0115678
Q ss_pred EEEEeCCCCch--hhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCC-EEEEEecCCCCCh
Q 015293 161 MILYDTPGIIE--KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKP 237 (409)
Q Consensus 161 i~liDtpG~~~--~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilvlNK~Dl~~~ 237 (409)
++++||||..+ .. ..+-..+ .... .+..+|.+++|+|+..+. ..... ...+. ...| ..+|+||+|....
T Consensus 183 ~ViIDTpg~~~~~~~-~~l~~el-~~i~-~~~~~d~vllVvda~~g~-~~~~~-~~~~~---~~~~i~gvVlnk~D~~~~ 254 (297)
T 1j8m_F 183 IIIVDTAGRHGYGEE-AALLEEM-KNIY-EAIKPDEVTLVIDASIGQ-KAYDL-ASKFN---QASKIGTIIITKMDGTAK 254 (297)
T ss_dssp EEEEECCCSCCTTCH-HHHHHHH-HHHH-HHHCCSEEEEEEEGGGGG-GHHHH-HHHHH---HTCTTEEEEEECGGGCTT
T ss_pred EEEEeCCCCcccccH-HHHHHHH-HHHH-HHhcCCEEEEEeeCCchH-HHHHH-HHHHH---hhCCCCEEEEeCCCCCcc
Confidence 99999999754 11 1121111 1111 234789999999997542 22122 22222 2355 7889999997643
Q ss_pred hhHHHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 238 GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
.. ........ .+ .|+.+++ +|+++++|
T Consensus 255 ~g--~~~~~~~~-~~-~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 255 GG--GALSAVAA-TG-ATIKFIG--TGEKIDEL 281 (297)
T ss_dssp HH--HHHHHHHT-TT-CCEEEEE--CSSSTTCE
T ss_pred hH--HHHHHHHH-HC-cCEEEEe--CCCChhhc
Confidence 22 12222222 22 3666665 67777553
No 232
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.03 E-value=8.3e-06 Score=82.06 Aligned_cols=55 Identities=25% Similarity=0.288 Sum_probs=39.9
Q ss_pred EEecCCCChHHHHHHHhCC---------------cceeeecCCCceEEEEEEEEeCC-----------CeeEEEEeCCCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ---------------KLSIVTNKPQTTRHRILGICSGP-----------EYQMILYDTPGI 169 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~---------------~~~~v~~~~~tt~~~~~~~~~~~-----------~~~i~liDtpG~ 169 (409)
|+|.+++|||||+|.|+|. +....+..+ ||+....++..+. ..+++|+||||+
T Consensus 72 V~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~-t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDTeG~ 150 (447)
T 3q5d_A 72 VAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRG-GSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGT 150 (447)
T ss_dssp EEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCC-SSCCCCCEEEEESSCEEEECSSSCEEEEEEEEEECC
T ss_pred EECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCC-CCCCceeEEEEecCccccccCCCCcceEEEEcCCcc
Confidence 9999999999999999975 333333333 5555556664442 367999999998
Q ss_pred ch
Q 015293 170 IE 171 (409)
Q Consensus 170 ~~ 171 (409)
..
T Consensus 151 ~~ 152 (447)
T 3q5d_A 151 FD 152 (447)
T ss_dssp CS
T ss_pred cc
Confidence 65
No 233
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.84 E-value=7.8e-06 Score=78.38 Aligned_cols=84 Identities=20% Similarity=0.217 Sum_probs=59.3
Q ss_pred hhcCcceEEEEeeCCCCCChHHHHHHHHhccC-CCCCCEEEEEecCCCCChhh----HHHHHHHHHhcCCCceEEEcccC
Q 015293 188 AGINADCIVVLVDACKAPERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE----IAKKLEWYEKFTDVDEVIPVSAK 262 (409)
Q Consensus 188 ~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~-~~~~p~ilvlNK~Dl~~~~~----~~~~~~~~~~~~~~~~iv~iSA~ 262 (409)
.+.++|.+++|+|+..+..... .+...+... ..++|.+||+||+|+.+... +..+...+... ++ +++.+||.
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~-g~-~v~~~sa~ 159 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI-GY-DVYLTSSK 159 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH-TC-CEEECCHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhC-CC-eEEEEecC
Confidence 4789999999999987664433 333333210 15789999999999987644 34455555443 33 78999999
Q ss_pred CCCCHHHHHHHH
Q 015293 263 YGHGVEDIRDWI 274 (409)
Q Consensus 263 ~g~gi~~L~~~L 274 (409)
+|.|+++|+..+
T Consensus 160 ~~~g~~~L~~~~ 171 (307)
T 1t9h_A 160 DQDSLADIIPHF 171 (307)
T ss_dssp HHTTCTTTGGGG
T ss_pred CCCCHHHHHhhc
Confidence 999998877654
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.51 E-value=0.00026 Score=68.38 Aligned_cols=99 Identities=21% Similarity=0.269 Sum_probs=52.1
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCChh
Q 015293 159 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 238 (409)
Q Consensus 159 ~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~~~ 238 (409)
..+.++||+|..+.....+ ..+.. ...++ .+|-.++++|+..+. .....+.. +.. .-...++++||.|.....
T Consensus 212 ~d~vliDtaG~~~~~~~l~-~eL~~-i~ral-~~de~llvLDa~t~~-~~~~~~~~-~~~--~~~it~iilTKlD~~a~~ 284 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLM-DEMKK-IARVT-KPNLVIFVGDALAGN-AIVEQARQ-FNE--AVKIDGIILTKLDADARG 284 (328)
T ss_dssp CSEEEEEECCSCCTTTCHH-HHHHH-HHHHH-CCSEEEEEEEGGGTT-HHHHHHHH-HHH--HSCCCEEEEECGGGCSCC
T ss_pred chhhHHhhccchhHHHHHH-HHHHH-HHHHh-cCCCCEEEEecHHHH-HHHHHHHH-HHH--hcCCCEEEEeCcCCccch
Confidence 4578899999754332222 22222 22222 478999999987653 22222222 221 123457889999975322
Q ss_pred hHHHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 239 EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 239 ~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
.. ........ + .|+.+++ +|+++++|
T Consensus 285 G~--~l~~~~~~-~-~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 285 GA--ALSISYVI-D-APILFVG--VGQGYDDL 310 (328)
T ss_dssp HH--HHHHHHHH-T-CCEEEEE--CSSSTTCE
T ss_pred hH--HHHHHHHH-C-CCEEEEe--CCCCcccc
Confidence 11 12222222 1 3677776 77777553
No 235
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.43 E-value=0.00032 Score=68.44 Aligned_cols=83 Identities=20% Similarity=0.310 Sum_probs=53.8
Q ss_pred hhcCcceEEEEeeCCCCCChHHHHHHHHhcc-CCCCCCEEEEEecCCCCChhh---HHHHHHHHHhcCCCceEEEcccCC
Q 015293 188 AGINADCIVVLVDACKAPERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFTDVDEVIPVSAKY 263 (409)
Q Consensus 188 ~~~~aDvillVvD~~~~~~~~~~~l~~~l~~-~~~~~p~ilvlNK~Dl~~~~~---~~~~~~~~~~~~~~~~iv~iSA~~ 263 (409)
.+.++|.+++|.. ..+... ...+...+.. ...++|.+||+||+|+.+... +..+...+... ++ +++++||.+
T Consensus 127 i~anvD~v~iv~a-~~P~~~-~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~-G~-~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSA-ILPELS-LNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNI-GY-RVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEE-STTTCC-HHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTT-TC-CEEECBTTT
T ss_pred HHhcCCEEEEEEe-CCCCCC-HHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhC-CC-cEEEEecCC
Confidence 3689999997754 444322 2233232210 014678899999999987654 33344444432 33 689999999
Q ss_pred CCCHHHHHHHH
Q 015293 264 GHGVEDIRDWI 274 (409)
Q Consensus 264 g~gi~~L~~~L 274 (409)
|.|+++|...+
T Consensus 203 ~~gl~~L~~~~ 213 (358)
T 2rcn_A 203 QDGLKPLEEAL 213 (358)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHHhc
Confidence 99999988765
No 236
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.22 E-value=0.0017 Score=62.43 Aligned_cols=73 Identities=18% Similarity=0.270 Sum_probs=39.2
Q ss_pred CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhh-----cCcceEEEEeeCCCCCChHHHHHHHHhccCCCCC-CEEEEEe
Q 015293 157 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG-----INADCIVVLVDACKAPERIDEILEEGVGDHKDKL-PILLVLN 230 (409)
Q Consensus 157 ~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~-----~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~-p~ilvlN 230 (409)
.++.++|+||||..+.....+. .+ ..+...+ ..+|.+++|+|+..+ ...-..... .. ... ..=+|+|
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~-eL-~~~~~vi~~~~p~~~d~vllVl~a~~~-~~~l~~~~~-~~---~~~~i~GvVlt 262 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMA-EL-EKMNKIIQQVEKSAPHEVLLVIDATTG-QNGVIQAEE-FS---KVADVSGIILT 262 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHH-HH-HHHHHHHHTTCTTCCSEEEEEEEGGGT-HHHHHHHHH-HT---TTSCCCEEEEE
T ss_pred cCCCEEEEcCCCcccccHHHHH-HH-HHHHHHHhcccCCCCceEEEEEECCCc-HHHHHHHHH-Hh---hcCCCcEEEEe
Confidence 3567999999997542211111 11 1111112 348899999999854 221122211 11 223 3347899
Q ss_pred cCCCCC
Q 015293 231 KKDLIK 236 (409)
Q Consensus 231 K~Dl~~ 236 (409)
|+|...
T Consensus 263 k~d~~~ 268 (320)
T 1zu4_A 263 KMDSTS 268 (320)
T ss_dssp CGGGCS
T ss_pred CCCCCC
Confidence 999754
No 237
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.16 E-value=0.0011 Score=67.36 Aligned_cols=144 Identities=17% Similarity=0.244 Sum_probs=70.8
Q ss_pred EEecCCCChHHHHHHHhCC------cceeeecCCCce-----------EEEEEEEEe------------------CCCee
Q 015293 116 VLGKPNVGKSTLANQMIGQ------KLSIVTNKPQTT-----------RHRILGICS------------------GPEYQ 160 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~------~~~~v~~~~~tt-----------~~~~~~~~~------------------~~~~~ 160 (409)
|+|.+|+|||||++.|.|. ++.......... +..+..+.. ..+..
T Consensus 298 LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~~~~~D 377 (503)
T 2yhs_A 298 MVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNID 377 (503)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHHHTTCS
T ss_pred EECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999998742 332221111100 000011100 13456
Q ss_pred EEEEeCCCCchhhhhhHhHHHH---HHHHHh-hcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 161 MILYDTPGIIEKKIHMLDSMMM---KNVRSA-GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 161 i~liDtpG~~~~~~~~l~~~~~---~~~~~~-~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
++++||+|..+.....+. .+. ..++.. ....+-++||+|++.+.... ..+...... .+ ...+|+||.|-..
T Consensus 378 vVLIDTaGrl~~~~~lm~-EL~kiv~iar~l~~~~P~evLLvLDattGq~al-~~ak~f~~~--~~-itgvIlTKLD~ta 452 (503)
T 2yhs_A 378 VLIADTAGRLQNKSHLME-ELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV-SQAKLFHEA--VG-LTGITLTKLDGTA 452 (503)
T ss_dssp EEEECCCCSCCCHHHHHH-HHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH-HHHHHHHHH--TC-CSEEEEECGGGCS
T ss_pred EEEEeCCCccchhhhHHH-HHHHHHHHHHHhccCCCCeeEEEecCcccHHHH-HHHHHHHhh--cC-CCEEEEEcCCCcc
Confidence 899999997543322221 111 111111 12356789999988663222 112111111 12 2457899999753
Q ss_pred hhhHHHHHHHHHhcCCCceEEEcccCCCCCHHHH
Q 015293 237 PGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 270 (409)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~L 270 (409)
.... .+....... .|+.++ .+|+++++|
T Consensus 453 kgG~--~lsi~~~~~--~PI~fi--g~Ge~vdDL 480 (503)
T 2yhs_A 453 KGGV--IFSVADQFG--IPIRYI--GVGERIEDL 480 (503)
T ss_dssp CCTH--HHHHHHHHC--CCEEEE--ECSSSGGGE
T ss_pred cccH--HHHHHHHHC--CCEEEE--ecCCChhhc
Confidence 2211 122222221 256654 367777663
No 238
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.13 E-value=0.0015 Score=62.34 Aligned_cols=74 Identities=15% Similarity=0.116 Sum_probs=40.6
Q ss_pred eeEEEEeCCCCchhhhh---hHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCC
Q 015293 159 YQMILYDTPGIIEKKIH---MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 235 (409)
Q Consensus 159 ~~i~liDtpG~~~~~~~---~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~ 235 (409)
..+.++||+|..+.... .+.+.-..-.+.....++.+++++|+..+... ...+...... . ...++++||.|..
T Consensus 185 ~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~-~~~~~~~~~~--~-~~t~iivTh~d~~ 260 (304)
T 1rj9_A 185 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG-LEQAKKFHEA--V-GLTGVIVTKLDGT 260 (304)
T ss_dssp CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH-HHHHHHHHHH--H-CCSEEEEECTTSS
T ss_pred CCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHH-HHHHHHHHHH--c-CCcEEEEECCccc
Confidence 45789999997553222 22211111122334568889999998766432 2222222211 1 2357889999975
Q ss_pred C
Q 015293 236 K 236 (409)
Q Consensus 236 ~ 236 (409)
.
T Consensus 261 a 261 (304)
T 1rj9_A 261 A 261 (304)
T ss_dssp C
T ss_pred c
Confidence 3
No 239
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.10 E-value=0.00055 Score=65.11 Aligned_cols=112 Identities=15% Similarity=0.173 Sum_probs=59.6
Q ss_pred EEecCCCChHHHHHHHhC-------CcceeeecCCCc--eEE-----------EE-E---------EEEeCCCeeEEEEe
Q 015293 116 VLGKPNVGKSTLANQMIG-------QKLSIVTNKPQT--TRH-----------RI-L---------GICSGPEYQMILYD 165 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~-------~~~~~v~~~~~t--t~~-----------~~-~---------~~~~~~~~~i~liD 165 (409)
++|.+|+||||++..|.+ .++..+...+.. ..+ .. . .+....+..++|+|
T Consensus 110 lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~dlvIiD 189 (296)
T 2px0_A 110 LFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYDHVFVD 189 (296)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSSEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999999852 233333222210 000 00 0 00012456899999
Q ss_pred CCCCchhhhhhHhHHHHHHHHHhhc--CcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 166 TPGIIEKKIHMLDSMMMKNVRSAGI--NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 166 tpG~~~~~~~~l~~~~~~~~~~~~~--~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
|||....... .+......+. .+|.+++|+|++..... +.+..+.+..-...-+|+||.|...
T Consensus 190 T~G~~~~~~~-----~~~el~~~l~~~~~~~~~lVl~at~~~~~----~~~~~~~~~~l~~~giVltk~D~~~ 253 (296)
T 2px0_A 190 TAGRNFKDPQ-----YIDELKETIPFESSIQSFLVLSATAKYED----MKHIVKRFSSVPVNQYIFTKIDETT 253 (296)
T ss_dssp CCCCCTTSHH-----HHHHHHHHSCCCTTEEEEEEEETTBCHHH----HHHHTTTTSSSCCCEEEEECTTTCS
T ss_pred CCCCChhhHH-----HHHHHHHHHhhcCCCeEEEEEECCCCHHH----HHHHHHHHhcCCCCEEEEeCCCccc
Confidence 9997542211 1122222232 36788999998765322 2222222211123456779999764
No 240
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.01 E-value=0.00012 Score=70.01 Aligned_cols=52 Identities=31% Similarity=0.344 Sum_probs=29.1
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCC-------CceEEEEEEEEeCCCeeEEEEeCCCCch
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKP-------QTTRHRILGICSGPEYQMILYDTPGIIE 171 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~-------~tt~~~~~~~~~~~~~~i~liDtpG~~~ 171 (409)
|+|++|||||||+|.|.|.....+.... ++|+.... .... .-.++||||+..
T Consensus 178 lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~~~~--~g~v~dtpg~~~ 236 (307)
T 1t9h_A 178 FAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHTS--GGLVADTPGFSS 236 (307)
T ss_dssp EEESHHHHHHHHHHHHCC-------------------CCCCCE--EEET--TEEEESSCSCSS
T ss_pred EECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--hhcC--CEEEecCCCccc
Confidence 9999999999999999986543322222 34443221 1111 237899999753
No 241
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.99 E-value=0.00061 Score=60.28 Aligned_cols=106 Identities=16% Similarity=0.210 Sum_probs=64.1
Q ss_pred ecCCCChHHHHHHHh------CCcceeeecCCCceEE-------EEEEEEe-------------CCCeeEEEEeCCCCch
Q 015293 118 GKPNVGKSTLANQMI------GQKLSIVTNKPQTTRH-------RILGICS-------------GPEYQMILYDTPGIIE 171 (409)
Q Consensus 118 G~~n~GKSsLln~l~------~~~~~~v~~~~~tt~~-------~~~~~~~-------------~~~~~i~liDtpG~~~ 171 (409)
+..|+||||+.-.|. |.++..+...++.+.. .....+. ...+.++++|||+...
T Consensus 9 ~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~viiD~~~~~~ 88 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIVDGAGSLS 88 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEEECCSSSS
T ss_pred CCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEEECCCCCC
Confidence 678999999987763 4455444332221100 0001111 1346899999998532
Q ss_pred hhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccC---CCCCCEEEEEecCCCC
Q 015293 172 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH---KDKLPILLVLNKKDLI 235 (409)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~---~~~~p~ilvlNK~Dl~ 235 (409)
. .....+..||.+++++..+... .....+.+.++.. ..+.++.+|+|++|..
T Consensus 89 ~-----------~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 89 V-----------ITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp H-----------HHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred H-----------HHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 1 1223456799999999987665 5555555555432 1356779999999964
No 242
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.78 E-value=0.00044 Score=67.53 Aligned_cols=52 Identities=27% Similarity=0.334 Sum_probs=31.5
Q ss_pred EEecCCCChHHHHHHHhCCcc-eeeecC---CC----ceEEEEEEEEeCCCeeEEEEeCCCCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKL-SIVTNK---PQ----TTRHRILGICSGPEYQMILYDTPGII 170 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~-~~v~~~---~~----tt~~~~~~~~~~~~~~i~liDtpG~~ 170 (409)
|+|++|||||||+|.|.|... ...... ++ +|+......+..+ ..++||||+.
T Consensus 220 lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~---~~l~dtpgv~ 279 (358)
T 2rcn_A 220 FAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHG---GDVIDSPGVR 279 (358)
T ss_dssp EECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTS---CEEEECHHHH
T ss_pred EECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCC---CEecCcccHH
Confidence 999999999999999998665 322211 12 3333333333322 2578999964
No 243
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.70 E-value=0.0029 Score=63.13 Aligned_cols=72 Identities=21% Similarity=0.258 Sum_probs=39.6
Q ss_pred CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCC-CEEEEEecCCCC
Q 015293 157 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-PILLVLNKKDLI 235 (409)
Q Consensus 157 ~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~-p~ilvlNK~Dl~ 235 (409)
.++.++++||||..+.. ..+-..+ ..... +-.+|-+++|+|+..+. ....... ... ... ..-+|+||+|..
T Consensus 179 ~~~DvVIIDTaG~l~~d-~~l~~el-~~i~~-~~~pd~vlLVvDa~tgq-~av~~a~-~f~---~~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQID-EPLMGEL-ARLKE-VLGPDEVLLVLDAMTGQ-EALSVAR-AFD---EKVGVTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCC-HHHHHHH-HHHHH-HHCCSEEEEEEEGGGTT-HHHHHHH-HHH---HHTCCCEEEEESGGGC
T ss_pred CCCCEEEEcCCCccccc-HHHHHHH-HHhhh-ccCCceEEEEEeccchH-HHHHHHH-HHH---hcCCceEEEEeCcCCc
Confidence 45679999999965421 1111111 11112 23689999999997652 2222221 111 122 356789999975
Q ss_pred C
Q 015293 236 K 236 (409)
Q Consensus 236 ~ 236 (409)
.
T Consensus 251 ~ 251 (425)
T 2ffh_A 251 A 251 (425)
T ss_dssp S
T ss_pred c
Confidence 4
No 244
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.65 E-value=0.0014 Score=62.53 Aligned_cols=51 Identities=24% Similarity=0.228 Sum_probs=30.4
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecC-------CCceEEEEEEEEeCCCeeEEEEeCCCCc
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNK-------PQTTRHRILGICSGPEYQMILYDTPGII 170 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~-------~~tt~~~~~~~~~~~~~~i~liDtpG~~ 170 (409)
++|++|+|||||+|.|. ......... .++|+....... .. .-.++||||+.
T Consensus 170 l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~--~~-~g~v~d~pg~~ 227 (302)
T 2yv5_A 170 LAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPF--GK-GSFVGDTPGFS 227 (302)
T ss_dssp EECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEE--TT-TEEEESSCCCS
T ss_pred EECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEc--CC-CcEEEECcCcC
Confidence 99999999999999998 543222111 124433322111 11 23678999974
No 245
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.62 E-value=0.0053 Score=58.57 Aligned_cols=101 Identities=16% Similarity=0.139 Sum_probs=49.3
Q ss_pred CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhh-----cCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEec
Q 015293 157 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG-----INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 231 (409)
Q Consensus 157 ~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~-----~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK 231 (409)
.++.++++||||..+ ....+-..+ ......+ ..+|.+++|+|++.+.... ........ .-...-+|+||
T Consensus 185 ~~~dvvIiDtpg~~~-~~~~l~~eL-~~l~~~i~~~i~~~p~~vllVlda~t~~~~l-~~a~~~~~---~~~i~gvVlTk 258 (306)
T 1vma_A 185 RNKDVVIIDTAGRLH-TKKNLMEEL-RKVHRVVKKKIPDAPHETLLVIDATTGQNGL-VQAKIFKE---AVNVTGIILTK 258 (306)
T ss_dssp TTCSEEEEEECCCCS-CHHHHHHHH-HHHHHHGGGTCTTCCSEEEEEEEGGGHHHHH-HHHHHHHH---HSCCCEEEEEC
T ss_pred cCCCEEEEECCCchh-hHHHHHHHH-HHHHHHHhhccCCCCcEEEEEEECCCCHHHH-HHHHHHHh---cCCCCEEEEeC
Confidence 345799999999643 222222222 2222222 3488999999997432111 11111111 11234567899
Q ss_pred CCCCChhhHHHHHHHHHhcCCCceEEEcccCCCCCHHH
Q 015293 232 KDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 269 (409)
Q Consensus 232 ~Dl~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~~ 269 (409)
.|....... ........ + .|+.+++ +|+++++
T Consensus 259 ~D~~~~gG~--~l~~~~~~-~-~Pi~~i~--~Ge~~~d 290 (306)
T 1vma_A 259 LDGTAKGGI--TLAIAREL-G-IPIKFIG--VGEKAED 290 (306)
T ss_dssp GGGCSCTTH--HHHHHHHH-C-CCEEEEE--CSSSGGG
T ss_pred CCCccchHH--HHHHHHHH-C-CCEEEEe--CCCChhh
Confidence 997543221 12222221 1 2666664 4555555
No 246
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.50 E-value=0.0082 Score=58.54 Aligned_cols=74 Identities=18% Similarity=0.113 Sum_probs=39.9
Q ss_pred eeEEEEeCCCCchhhhh---hHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCC
Q 015293 159 YQMILYDTPGIIEKKIH---MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 235 (409)
Q Consensus 159 ~~i~liDtpG~~~~~~~---~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~ 235 (409)
....++||.|+.+.... .+.+.-..-.+.....++-+++|+|++.+...... ....... .+ ..+++++|.|-.
T Consensus 241 ~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~-~~~~~~~--~g-~t~iiiThlD~~ 316 (359)
T 2og2_A 241 YDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEV--VG-ITGLILTKLDGS 316 (359)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHH--TC-CCEEEEESCTTC
T ss_pred CHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH-HHHHHHh--cC-CeEEEEecCccc
Confidence 34688999998552222 22211111122234567888999997766544322 2222111 22 347788999875
Q ss_pred C
Q 015293 236 K 236 (409)
Q Consensus 236 ~ 236 (409)
.
T Consensus 317 ~ 317 (359)
T 2og2_A 317 A 317 (359)
T ss_dssp S
T ss_pred c
Confidence 4
No 247
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.48 E-value=0.0066 Score=57.75 Aligned_cols=74 Identities=18% Similarity=0.113 Sum_probs=39.1
Q ss_pred eeEEEEeCCCCchhhhh---hHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCC
Q 015293 159 YQMILYDTPGIIEKKIH---MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 235 (409)
Q Consensus 159 ~~i~liDtpG~~~~~~~---~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~ 235 (409)
....++||.|+.+.... .+.+....-.+.....++-+++|+|++.+.+.... +....+. .+ ..+++++|.|..
T Consensus 184 ~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~-~~~~~~~--~g-~t~iiiThlD~~ 259 (302)
T 3b9q_A 184 YDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEV--VG-ITGLILTKLDGS 259 (302)
T ss_dssp CSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHH--TC-CCEEEEECCSSC
T ss_pred CcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH-HHHHHHh--cC-CCEEEEeCCCCC
Confidence 34678999998542222 22211111112223467778899997766544322 2222111 23 346778999875
Q ss_pred C
Q 015293 236 K 236 (409)
Q Consensus 236 ~ 236 (409)
.
T Consensus 260 ~ 260 (302)
T 3b9q_A 260 A 260 (302)
T ss_dssp S
T ss_pred C
Confidence 3
No 248
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.37 E-value=0.0015 Score=62.06 Aligned_cols=22 Identities=32% Similarity=0.302 Sum_probs=19.7
Q ss_pred EEecCCCChHHHHHHHhCCcce
Q 015293 116 VLGKPNVGKSTLANQMIGQKLS 137 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~ 137 (409)
++|++|+|||||+|.|.|....
T Consensus 174 l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 174 MAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp EECSTTSSHHHHHHHHSTTCCC
T ss_pred EECCCCCcHHHHHHHhcccccc
Confidence 9999999999999999986543
No 249
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.23 E-value=0.015 Score=55.55 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=17.8
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|..|+|||||+|.|++.
T Consensus 9 i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 9 LTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEESSSSSCHHHHHHHHHS
T ss_pred EEecCCCCHHHHHHHHHhh
Confidence 9999999999999999964
No 250
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.06 E-value=0.0033 Score=56.30 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=61.1
Q ss_pred EecCCCChHHHHHHHh------CCcceeeecCCCceEEEEE-------EEEe-------CCCeeEEEEeCCCC-chhhhh
Q 015293 117 LGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHRIL-------GICS-------GPEYQMILYDTPGI-IEKKIH 175 (409)
Q Consensus 117 vG~~n~GKSsLln~l~------~~~~~~v~~~~~tt~~~~~-------~~~~-------~~~~~i~liDtpG~-~~~~~~ 175 (409)
-+..|+||||+.-.|. | ++..+...++.+..... .++. .+.+.++++|||+. ...
T Consensus 7 s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~~~~--- 82 (209)
T 3cwq_A 7 SFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARPEDE--- 82 (209)
T ss_dssp ESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECCCSSS---
T ss_pred cCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCCcCcH---
Confidence 4778999999987764 5 55444333321100000 0111 13467999999985 321
Q ss_pred hHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 176 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 176 ~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
.....+..||.+++++..+...-.....+.+.++.. .+.++.+|+|++|...
T Consensus 83 --------~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~-~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 83 --------DLEALADGCDLLVIPSTPDALALDALMLTIETLQKL-GNNRFRILLTIIPPYP 134 (209)
T ss_dssp --------HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHT-CSSSEEEEECSBCCTT
T ss_pred --------HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhc-cCCCEEEEEEecCCcc
Confidence 122346689999999987543222222333333331 2567899999999754
No 251
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.79 E-value=0.018 Score=54.48 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=37.9
Q ss_pred CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCC-CEEEEEecCCCC
Q 015293 157 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-PILLVLNKKDLI 235 (409)
Q Consensus 157 ~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~-p~ilvlNK~Dl~ 235 (409)
.++.++++||||..+.....+. .+. .....+ .+|.+++|+|+..+ ........ ... ... ..-+|+||+|..
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~-~l~-~~~~~~-~~~~~~lv~~~~~~-~~~~~~~~-~~~---~~~~i~givlnk~d~~ 250 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMG-ELA-RLKEVL-GPDEVLLVLDAMTG-QEALSVAR-AFD---EKVGVTGLVLTKLDGD 250 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHH-HHH-HHHHHH-CCSEEEEEEEGGGT-HHHHHHHH-HHH---HHTCCCEEEEECGGGC
T ss_pred CCCCEEEEeCCCCccccHHHHH-HHH-HHhhhc-CCCEEEEEEeCCCc-HHHHHHHH-HHh---hcCCCCEEEEECCCCC
Confidence 3467999999985432111121 111 111212 58888999998753 22111111 111 122 345789999975
Q ss_pred C
Q 015293 236 K 236 (409)
Q Consensus 236 ~ 236 (409)
.
T Consensus 251 ~ 251 (295)
T 1ls1_A 251 A 251 (295)
T ss_dssp S
T ss_pred c
Confidence 4
No 252
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.74 E-value=0.014 Score=55.19 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=38.9
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccC--CCCCCEE-EEEecCCC
Q 015293 158 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH--KDKLPIL-LVLNKKDL 234 (409)
Q Consensus 158 ~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~--~~~~p~i-lvlNK~Dl 234 (409)
.+.++++|||+..... .+...+..||.+++|+......-.....+.+.++.. ..+.+++ +|+|+++.
T Consensus 156 ~yD~ViiD~p~~~~~~----------~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG----------GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCG----------GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchH----------HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 4678999998843211 012346789999999976532212222233333321 1345554 89999994
No 253
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.71 E-value=0.0016 Score=58.12 Aligned_cols=51 Identities=24% Similarity=0.290 Sum_probs=34.0
Q ss_pred EEecCCCChHHHHHHHhCCcc-eeeecCCCceEEEEEEEEeCCCeeEEEEeCCC
Q 015293 116 VLGKPNVGKSTLANQMIGQKL-SIVTNKPQTTRHRILGICSGPEYQMILYDTPG 168 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~-~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG 168 (409)
|+|++|+|||||++.|++... ......+.|||.+..+. .+|..+.++|...
T Consensus 24 l~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~ 75 (197)
T 3ney_A 24 LIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEE 75 (197)
T ss_dssp EECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHH
T ss_pred EECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHH
Confidence 999999999999999987543 23455666776654332 3445555555544
No 254
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.04 E-value=0.12 Score=51.44 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=21.2
Q ss_pred CCCeeE-EEecCCCChHHHHHHHhCC
Q 015293 110 HPNHKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 110 ~~~~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
.+..|+ +.|+||+|||+|+.++.+.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 455677 9999999999999999764
No 255
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.79 E-value=0.014 Score=50.65 Aligned_cols=19 Identities=32% Similarity=0.648 Sum_probs=17.8
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|++|+|||||++.|.+.
T Consensus 10 i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 10 LLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 9999999999999999874
No 256
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.61 E-value=0.22 Score=49.08 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=21.1
Q ss_pred CCCeeE-EEecCCCChHHHHHHHhCC
Q 015293 110 HPNHKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 110 ~~~~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
.+..|+ +.|+||+|||+|..++.+.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 445677 9999999999999999764
No 257
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.55 E-value=0.014 Score=51.67 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=17.8
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|++|+|||||++.|.+.
T Consensus 9 lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 9 LSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 9999999999999999874
No 258
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.53 E-value=0.0029 Score=63.93 Aligned_cols=96 Identities=14% Similarity=0.108 Sum_probs=49.7
Q ss_pred EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEE----EeCCCeeEEEEeCCCCchhhhhhHhHH---HHHHHHHh
Q 015293 116 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI----CSGPEYQMILYDTPGIIEKKIHMLDSM---MMKNVRSA 188 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~----~~~~~~~i~liDtpG~~~~~~~~l~~~---~~~~~~~~ 188 (409)
++|.||+||||+.++|...-.. ... .|....... .........++|+.| ...+...+.. .......+
T Consensus 44 lvGlpGsGKSTia~~La~~l~~---~~~-~t~~~~~d~~r~~~~g~~~~~~ifd~~g--~~~~r~re~~~~~~l~~~~~~ 117 (469)
T 1bif_A 44 MVGLPARGKTYISKKLTRYLNF---IGV-PTREFNVGQYRRDMVKTYKSFEFFLPDN--EEGLKIRKQCALAALNDVRKF 117 (469)
T ss_dssp EECCTTSSHHHHHHHHHHHHHH---TTC-CEEEEEHHHHHHHHHCSCCCGGGGCTTC--HHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHhc---cCC-CceEEecchhhhhhccCCCcccccCCCC--HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998743211 000 111100000 000112234678877 3221111111 12233455
Q ss_pred hcCcceEEEEeeCCCCCChHHHHHHHHhc
Q 015293 189 GINADCIVVLVDACKAPERIDEILEEGVG 217 (409)
Q Consensus 189 ~~~aDvillVvD~~~~~~~~~~~l~~~l~ 217 (409)
+..++..++|+|++.........+...++
T Consensus 118 l~~~~G~~vV~D~tn~~~~~R~~~~~~~~ 146 (469)
T 1bif_A 118 LSEEGGHVAVFDATNTTRERRAMIFNFGE 146 (469)
T ss_dssp HHTTCCSEEEEESCCCSHHHHHHHHHHHH
T ss_pred HHhCCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 65678889999998775444445544444
No 259
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.44 E-value=0.1 Score=52.24 Aligned_cols=17 Identities=41% Similarity=0.452 Sum_probs=15.8
Q ss_pred EEecCCCChHHHHHHHh
Q 015293 116 VLGKPNVGKSTLANQMI 132 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~ 132 (409)
|+|.+++|||+|+|.|+
T Consensus 72 v~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 72 VAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEBTTSSHHHHHHHHH
T ss_pred EECCCCCchhHHHHHHH
Confidence 99999999999999765
No 260
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.33 E-value=0.027 Score=48.90 Aligned_cols=19 Identities=37% Similarity=0.616 Sum_probs=18.1
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|.+|+|||||++.|.+.
T Consensus 14 l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 14 LSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEECTTSCHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHHhc
Confidence 9999999999999999885
No 261
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.21 E-value=0.021 Score=50.64 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=18.3
Q ss_pred EEecCCCChHHHHHHHhCCc
Q 015293 116 VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~ 135 (409)
|+|++|+|||||++.|.|-.
T Consensus 25 l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 25 LSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EECSTTSSHHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhhC
Confidence 99999999999999998753
No 262
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.16 E-value=0.017 Score=50.30 Aligned_cols=20 Identities=35% Similarity=0.757 Sum_probs=18.0
Q ss_pred EEecCCCChHHHHHHHhCCc
Q 015293 116 VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~ 135 (409)
|+|++|+|||||++.|.|.-
T Consensus 5 l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 5 ITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 89999999999999998653
No 263
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.14 E-value=0.027 Score=50.03 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=18.4
Q ss_pred EEecCCCChHHHHHHHhCCc
Q 015293 116 VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~ 135 (409)
|+|++|+|||||++.|.+..
T Consensus 13 l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 13 LSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EECCTTSCHHHHHHHHHHST
T ss_pred EECcCCCCHHHHHHHHHhhC
Confidence 99999999999999998764
No 264
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.90 E-value=0.028 Score=49.29 Aligned_cols=19 Identities=16% Similarity=0.412 Sum_probs=17.9
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|++|+|||||++.|.+.
T Consensus 12 l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 12 ISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EECCTTSCHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHhh
Confidence 9999999999999999875
No 265
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.84 E-value=0.025 Score=49.84 Aligned_cols=35 Identities=29% Similarity=0.325 Sum_probs=24.9
Q ss_pred EEEecCCCChHHHHHHHhCCcc-eeeecCCCceEEE
Q 015293 115 SVLGKPNVGKSTLANQMIGQKL-SIVTNKPQTTRHR 149 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~~~~-~~v~~~~~tt~~~ 149 (409)
+|+|++|||||||+++|+.... ......+.|||.+
T Consensus 5 Vi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 5 VISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 4999999999999999985431 1234556666643
No 266
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.81 E-value=0.21 Score=50.06 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=21.2
Q ss_pred CCCeeE-EEecCCCChHHHHHHHhCC
Q 015293 110 HPNHKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 110 ~~~~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
.+..|+ +.|+||+|||+|..++.+.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 456677 9999999999999999764
No 267
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.80 E-value=0.027 Score=50.63 Aligned_cols=19 Identities=32% Similarity=0.662 Sum_probs=17.9
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|++|+|||||++.|.|.
T Consensus 28 lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 28 ICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 9999999999999999874
No 268
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.77 E-value=0.03 Score=49.66 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=19.3
Q ss_pred eeE-EEecCCCChHHHHHHHhCCc
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
..+ |+|++|+|||||++.|.+.-
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 344 99999999999999998743
No 269
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.74 E-value=0.035 Score=50.63 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=20.3
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|--
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4444 99999999999999999854
No 270
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.69 E-value=0.03 Score=50.52 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.5
Q ss_pred EEecCCCChHHHHHHHhCCc
Q 015293 116 VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~ 135 (409)
|+|++|+|||||++.|.|..
T Consensus 21 l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 21 VSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EECCTTSCHHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhccC
Confidence 99999999999999998854
No 271
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.42 E-value=0.034 Score=50.26 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=20.2
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3344 99999999999999999854
No 272
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.40 E-value=0.084 Score=44.87 Aligned_cols=22 Identities=23% Similarity=0.616 Sum_probs=18.3
Q ss_pred eeEEEecCCCChHHHHHHHhCC
Q 015293 113 HKSVLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 113 ~~~ivG~~n~GKSsLln~l~~~ 134 (409)
.-+|.|.||+|||+|++.+...
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 3349999999999999998754
No 273
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.39 E-value=0.027 Score=49.00 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=18.1
Q ss_pred EEecCCCChHHHHHHHhCCc
Q 015293 116 VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~ 135 (409)
|+|++|+|||||++.|.+..
T Consensus 6 l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 6 ISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EESSSSSSHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHhhC
Confidence 89999999999999998643
No 274
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.38 E-value=0.097 Score=52.11 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=21.1
Q ss_pred CCCeeE-EEecCCCChHHHHHHHhCC
Q 015293 110 HPNHKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 110 ~~~~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
.+..|+ +.|+||+|||+|+.++.+.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 445677 9999999999999999753
No 275
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.37 E-value=0.044 Score=50.03 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=20.5
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4444 99999999999999999864
No 276
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.31 E-value=0.047 Score=50.00 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=20.9
Q ss_pred CCeeE-EEecCCCChHHHHHHHhCCc
Q 015293 111 PNHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 111 ~~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
+...+ |+|++|+|||||++.|.|-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34445 99999999999999999854
No 277
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.23 E-value=0.29 Score=48.55 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=21.2
Q ss_pred CCCeeE-EEecCCCChHHHHHHHhCC
Q 015293 110 HPNHKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 110 ~~~~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
.+..|+ +.|+||+|||+|+.++.+.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHH
Confidence 445677 9999999999999999764
No 278
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.22 E-value=0.047 Score=50.63 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=20.3
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|--
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444 99999999999999999854
No 279
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.18 E-value=0.61 Score=42.12 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=18.3
Q ss_pred eeE-EEecCCCChHHHHHHHhC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~ 133 (409)
.++ |.|.||+|||+|+.++..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 445 999999999999999865
No 280
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.10 E-value=0.16 Score=43.92 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=16.7
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|.+|+|||||+++|+.
T Consensus 9 i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 9 VVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999874
No 281
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.09 E-value=0.048 Score=46.54 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=19.8
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|+.|+|||||++.|.|.-
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3344 99999999999999998753
No 282
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.00 E-value=0.053 Score=50.37 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=20.3
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|--
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3344 99999999999999999854
No 283
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.99 E-value=0.054 Score=50.11 Aligned_cols=24 Identities=17% Similarity=0.164 Sum_probs=20.4
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|+.|+|||||++.|.|-.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444 99999999999999999854
No 284
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.98 E-value=0.041 Score=47.30 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=16.5
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
++|++|+|||||++.+.+
T Consensus 14 l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 14 LIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EECCTTSCHHHHHHHHSC
T ss_pred EECCCCCCHHHHHHHHcc
Confidence 999999999999998664
No 285
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.96 E-value=0.045 Score=52.03 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=20.5
Q ss_pred CCCeeE-EEecCCCChHHHHHHHhCC
Q 015293 110 HPNHKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 110 ~~~~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
.+...+ |+|++|+|||||++.|.|-
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 445555 9999999999999999853
No 286
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.93 E-value=0.055 Score=50.10 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.0
Q ss_pred CeeE-EEecCCCChHHHHHHHhCC
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
...+ |+|++|+|||||++.|.|-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 4444 9999999999999999985
No 287
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.86 E-value=0.057 Score=50.19 Aligned_cols=24 Identities=33% Similarity=0.643 Sum_probs=20.4
Q ss_pred CCeeE-EEecCCCChHHHHHHHhCC
Q 015293 111 PNHKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 111 ~~~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
+...+ |+|++|+|||||++.|.|-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34444 9999999999999999995
No 288
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.82 E-value=0.045 Score=50.12 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=19.9
Q ss_pred eeE-EEecCCCChHHHHHHHhCCc
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
..+ |+|++|+|||||++.|.|--
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 344 99999999999999999854
No 289
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.81 E-value=0.058 Score=50.28 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=20.8
Q ss_pred CCeeE-EEecCCCChHHHHHHHhCCc
Q 015293 111 PNHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 111 ~~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
+...+ |+|++|+|||||++.|.|-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34444 99999999999999999864
No 290
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.77 E-value=0.18 Score=47.25 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=18.0
Q ss_pred eeE-EEecCCCChHHHHHHHhC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~ 133 (409)
.++ +.|+||+|||+|..++..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 455 779999999999999864
No 291
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.73 E-value=0.061 Score=49.97 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=20.7
Q ss_pred CCeeE-EEecCCCChHHHHHHHhCCc
Q 015293 111 PNHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 111 ~~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
+...+ |+|+.|+|||||++.|.|-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34444 99999999999999999854
No 292
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.71 E-value=0.046 Score=50.48 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=20.3
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344 99999999999999999854
No 293
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.70 E-value=0.048 Score=49.04 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=20.2
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|+.|+|||||++.|.|-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3344 99999999999999999854
No 294
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.67 E-value=0.12 Score=51.53 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.0
Q ss_pred CCCeeE-EEecCCCChHHHHHHHhCC
Q 015293 110 HPNHKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 110 ~~~~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
.+..|+ +.|+||+|||+|+.++.+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 345677 9999999999999999764
No 295
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.61 E-value=0.062 Score=47.41 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=17.8
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|.+|+|||||++.|.+.
T Consensus 11 i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 11 IAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEESTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 9999999999999999874
No 296
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.59 E-value=0.059 Score=47.16 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=18.3
Q ss_pred EEecCCCChHHHHHHHhCCc
Q 015293 116 VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~ 135 (409)
|+|.+|+||||+++.|.+.-
T Consensus 11 l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 11 LSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EECSTTSCHHHHHHHHHHCT
T ss_pred EECCCCCCHHHHHHHHHHhh
Confidence 99999999999999998754
No 297
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.51 E-value=0.051 Score=50.84 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=20.2
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|--
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3344 99999999999999999854
No 298
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.50 E-value=0.052 Score=50.51 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=20.3
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|--
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3344 99999999999999999854
No 299
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.46 E-value=0.053 Score=49.15 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=20.3
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|+.|+|||||++.|.|-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344 99999999999999999864
No 300
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.45 E-value=0.063 Score=49.77 Aligned_cols=19 Identities=42% Similarity=0.468 Sum_probs=17.8
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|++|+|||||++.|.+.
T Consensus 30 i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 30 VTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EECSTTCSHHHHHHHHHHH
T ss_pred EECCCCccHHHHHHHHHHh
Confidence 9999999999999999874
No 301
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.38 E-value=0.055 Score=49.73 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.4
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444 99999999999999999864
No 302
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.38 E-value=0.055 Score=49.44 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=18.6
Q ss_pred EEecCCCChHHHHHHHhCCc
Q 015293 116 VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~ 135 (409)
|+|++|+|||||++.|.|-.
T Consensus 37 l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 37 LIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999999854
No 303
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.34 E-value=0.056 Score=49.70 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=19.9
Q ss_pred CeeE-EEecCCCChHHHHHHHhCC
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
...+ |+|++|+|||||++.|.|-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 3344 9999999999999999995
No 304
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=92.34 E-value=0.061 Score=50.13 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=19.9
Q ss_pred CeeE-EEecCCCChHHHHHHHhCC
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
..|+ |+|+||+|||||+++|.+.
T Consensus 44 ~~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457 9999999999999999874
No 305
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.33 E-value=0.056 Score=49.77 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=20.3
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3344 99999999999999999864
No 306
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.20 E-value=0.052 Score=46.70 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=19.2
Q ss_pred eeE-EEecCCCChHHHHHHHhCCc
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
..+ |+|++|+|||||++.+.+.-
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 344 99999999999999987643
No 307
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.19 E-value=0.38 Score=44.34 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=19.1
Q ss_pred CeeE-EEecCCCChHHHHHHHhCC
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
..++ |.|+||+|||+|+.++...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 3455 9999999999999999653
No 308
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.15 E-value=0.054 Score=46.97 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=17.0
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|++|+|||||++.|.+
T Consensus 7 l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 7 ITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHhc
Confidence 899999999999999975
No 309
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.13 E-value=0.07 Score=46.90 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=17.3
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|.+|+|||||++.|.+.
T Consensus 34 l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 34 VMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp EECCTTSCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 9999999999999998753
No 310
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.08 E-value=0.048 Score=48.74 Aligned_cols=19 Identities=37% Similarity=0.300 Sum_probs=18.3
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|++|+|||||++.|.|-
T Consensus 27 liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 27 GLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EECCTTSSTTHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 9999999999999999986
No 311
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=92.02 E-value=0.35 Score=44.22 Aligned_cols=66 Identities=20% Similarity=0.264 Sum_probs=42.5
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCC
Q 015293 158 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 234 (409)
Q Consensus 158 ~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl 234 (409)
.+.++++|||+.... ....++..||.+++++............+.+.++....+.++.+|+|+++.
T Consensus 144 ~yD~viiD~pp~~~~-----------~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 144 KYDYIVIDTNPSLDV-----------TLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp TCSEEEEEECSSCSH-----------HHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred CCCEEEEECcCCccH-----------HHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccC
Confidence 467999999984321 122346679999999988643322233444445543345688899999954
No 312
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.01 E-value=0.09 Score=49.54 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=20.8
Q ss_pred CCeeE-EEecCCCChHHHHHHHhCCc
Q 015293 111 PNHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 111 ~~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
+...+ |+|+.|+|||||++.|.|-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34444 99999999999999999864
No 313
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.98 E-value=0.064 Score=50.23 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=20.3
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|+.|+|||||++.|.|--
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3344 99999999999999999854
No 314
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.96 E-value=0.062 Score=47.80 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=17.8
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|++|+|||||++.|.+.
T Consensus 30 l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 30 VFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEESTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 9999999999999999873
No 315
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.93 E-value=0.065 Score=49.40 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=20.3
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344 99999999999999999864
No 316
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.91 E-value=0.096 Score=46.13 Aligned_cols=19 Identities=37% Similarity=0.646 Sum_probs=17.3
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|.+|+|||||++.|...
T Consensus 17 l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 17 VCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp EECCTTSCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 9999999999999999753
No 317
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.79 E-value=0.052 Score=48.87 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=12.7
Q ss_pred EEecCCCChHHHHHHHh-CCc
Q 015293 116 VLGKPNVGKSTLANQMI-GQK 135 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~-~~~ 135 (409)
|+|++|+|||||++.|. +..
T Consensus 32 l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 32 LSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECSCC----CHHHHHHC---
T ss_pred EECCCCCCHHHHHHHHHhcCC
Confidence 99999999999999999 753
No 318
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.77 E-value=0.25 Score=45.97 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.0
Q ss_pred CeeE-EEecCCCChHHHHHHHhC
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~ 133 (409)
..++ |.|+||+|||+|++++.+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 3455 999999999999999975
No 319
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.76 E-value=0.064 Score=45.59 Aligned_cols=19 Identities=37% Similarity=0.565 Sum_probs=17.4
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|.+|+||||+.+.|.+.
T Consensus 9 l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 9 LVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp EECCTTSCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 9999999999999998763
No 320
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=91.75 E-value=0.083 Score=48.16 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=19.2
Q ss_pred eeE-EEecCCCChHHHHHHHhCC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
.++ |+|+||+|||||++++.+.
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 446 9999999999999999864
No 321
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.74 E-value=0.062 Score=47.27 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=17.6
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|++|+|||||++.|.|.
T Consensus 6 i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 6 LTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp EESCCSSCHHHHHHHHHHH
T ss_pred EECCCCChHHHHHHHHHhh
Confidence 8999999999999999864
No 322
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.65 E-value=0.067 Score=46.45 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=17.7
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|.+|+|||||+++|++.
T Consensus 11 i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 11 FAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EECCTTSCHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHh
Confidence 9999999999999999864
No 323
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.64 E-value=0.097 Score=44.62 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=16.8
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|.+|+||||+++.|.+
T Consensus 13 l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 13 LMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EECSTTSCHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 999999999999999865
No 324
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.58 E-value=0.061 Score=51.14 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=21.4
Q ss_pred CCCeeE-EEecCCCChHHHHHHHhCCc
Q 015293 110 HPNHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 110 ~~~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
.+...+ |+|++|+|||||++.|.|--
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 344555 99999999999999998854
No 325
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.46 E-value=0.11 Score=50.48 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.2
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|-.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3344 99999999999999999854
No 326
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.43 E-value=0.075 Score=44.71 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.0
Q ss_pred eeE-EEecCCCChHHHHHHHhCC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
..+ |+|.+|+|||||++.+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 344 9999999999999999874
No 327
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.43 E-value=0.083 Score=48.05 Aligned_cols=20 Identities=35% Similarity=0.758 Sum_probs=18.3
Q ss_pred EEecCCCChHHHHHHHh---CCc
Q 015293 116 VLGKPNVGKSTLANQMI---GQK 135 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~---~~~ 135 (409)
|+|.+|+|||||++.|. |-.
T Consensus 32 l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 32 ILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp EECCTTSSHHHHHHHHHHHHCCC
T ss_pred EECCCCCCHHHHHHHHHHHhCCe
Confidence 99999999999999998 654
No 328
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.41 E-value=0.37 Score=45.20 Aligned_cols=24 Identities=29% Similarity=0.583 Sum_probs=19.9
Q ss_pred CCeeE-EEecCCCChHHHHHHHhCC
Q 015293 111 PNHKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 111 ~~~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
+..++ |.|+||+|||+|++++.+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 34556 9999999999999999753
No 329
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.34 E-value=0.1 Score=45.77 Aligned_cols=19 Identities=42% Similarity=0.410 Sum_probs=17.3
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|.+|+||||+++.|.+.
T Consensus 30 l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 30 VTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 9999999999999998754
No 330
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.30 E-value=0.11 Score=50.61 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=20.3
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|-.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3444 99999999999999999854
No 331
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.26 E-value=0.086 Score=48.92 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=20.4
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344 99999999999999999864
No 332
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.20 E-value=0.11 Score=49.46 Aligned_cols=19 Identities=42% Similarity=0.429 Sum_probs=17.7
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|.+|+|||||++.|.|.
T Consensus 95 I~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 95 VAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EECCTTSCHHHHHHHHHHH
T ss_pred EECCCCchHHHHHHHHHhh
Confidence 9999999999999999874
No 333
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.09 E-value=0.12 Score=50.28 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.2
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3344 99999999999999999853
No 334
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.96 E-value=0.12 Score=50.21 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=20.2
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3344 99999999999999999854
No 335
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.91 E-value=0.097 Score=44.02 Aligned_cols=16 Identities=38% Similarity=0.673 Sum_probs=15.6
Q ss_pred EEecCCCChHHHHHHH
Q 015293 116 VLGKPNVGKSTLANQM 131 (409)
Q Consensus 116 ivG~~n~GKSsLln~l 131 (409)
|+|.||+||||+.+.|
T Consensus 6 l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 6 ITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EECCTTSCHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 8999999999999999
No 336
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.79 E-value=0.39 Score=45.63 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.5
Q ss_pred CeeE-EEecCCCChHHHHHHHhCC
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
.+++ |.|+||+|||+|+.++...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 3566 9999999999999998753
No 337
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.75 E-value=0.1 Score=47.01 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=16.9
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|++|+|||||++.|++
T Consensus 35 l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 35 LTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHH
Confidence 999999999999999984
No 338
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=90.75 E-value=0.44 Score=46.19 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=16.3
Q ss_pred EEecCCCChHHHHHHHh
Q 015293 116 VLGKPNVGKSTLANQMI 132 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~ 132 (409)
|+|++|+|||||+++|.
T Consensus 28 i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 28 VEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 99999999999999986
No 339
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.72 E-value=0.13 Score=50.30 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=20.2
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|-.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3344 99999999999999999854
No 340
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.71 E-value=0.13 Score=50.15 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.1
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|-.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3344 99999999999999999853
No 341
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.71 E-value=0.34 Score=44.53 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=18.6
Q ss_pred eeE-EEecCCCChHHHHHHHhCC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
..+ |.|.||+|||+|+.++...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 344 9999999999999998753
No 342
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=90.66 E-value=0.1 Score=43.97 Aligned_cols=18 Identities=28% Similarity=0.196 Sum_probs=16.6
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|.+|+||||+.+.|..
T Consensus 6 l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 6 LEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EECSSSSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 899999999999999864
No 343
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.66 E-value=0.11 Score=50.45 Aligned_cols=19 Identities=37% Similarity=0.433 Sum_probs=17.7
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|++|+|||||++.|++.
T Consensus 128 I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 128 VTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EECSTTSCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHhc
Confidence 9999999999999999864
No 344
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.60 E-value=0.11 Score=50.53 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=18.6
Q ss_pred EEecCCCChHHHHHHHhCCc
Q 015293 116 VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~ 135 (409)
|+|++|+|||||++.|.|-.
T Consensus 46 llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 46 LLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EECSTTSSHHHHHHHHHTSS
T ss_pred EECCCCCcHHHHHHHHhCCC
Confidence 99999999999999999854
No 345
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.55 E-value=0.25 Score=45.84 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=41.3
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEE-EEEecCCCC
Q 015293 159 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLI 235 (409)
Q Consensus 159 ~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~i-lvlNK~Dl~ 235 (409)
+.++|+|||+..... + +......||.+++|+..............+.+.. .+.+++ +|+|++|..
T Consensus 192 yD~VIIDtpp~~~~~-d---------~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~--~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT-D---------AQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEA--TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp CSEEEEECCCTTTCS-H---------HHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHT--TTCEEEEEEEEEECC-
T ss_pred CCEEEEeCCCCchHH-H---------HHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHh--CCCCEEEEEEeCCcCC
Confidence 458999999854311 1 1112356899999999876554444444555554 456666 899999864
No 346
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.53 E-value=0.54 Score=44.46 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=19.3
Q ss_pred CeeE-EEecCCCChHHHHHHHhCC
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
..++ |.|+||+|||+|+.++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 4456 9999999999999999653
No 347
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=90.52 E-value=0.13 Score=47.67 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=19.2
Q ss_pred eeE-EEecCCCChHHHHHHHhCC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
.++ |+|+||+|||||+++|.+.
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHHHHHH
Confidence 446 9999999999999999864
No 348
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.51 E-value=0.15 Score=50.09 Aligned_cols=24 Identities=33% Similarity=0.630 Sum_probs=20.3
Q ss_pred CCeeE-EEecCCCChHHHHHHHhCC
Q 015293 111 PNHKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 111 ~~~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
+...+ |+|++|+|||||++.|.|-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 34445 9999999999999999985
No 349
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.48 E-value=0.15 Score=44.74 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=16.8
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|.+|+||||+...|..
T Consensus 30 l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 30 LTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 999999999999999864
No 350
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.39 E-value=0.12 Score=44.04 Aligned_cols=18 Identities=44% Similarity=0.702 Sum_probs=17.0
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.||+||||+.+.|..
T Consensus 7 i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 7 TIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHh
Confidence 999999999999999975
No 351
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=90.36 E-value=11 Score=35.30 Aligned_cols=89 Identities=10% Similarity=0.025 Sum_probs=46.4
Q ss_pred HhhcCc--ceEEEEeeCCCCCChHHHHHHHHhccCCCCCCE-EEEEecCCCCCh-hh--------HHHHHHHHHhcCCCc
Q 015293 187 SAGINA--DCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKDLIKP-GE--------IAKKLEWYEKFTDVD 254 (409)
Q Consensus 187 ~~~~~a--DvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~-ilvlNK~Dl~~~-~~--------~~~~~~~~~~~~~~~ 254 (409)
..+.+. +.+++|.-.............+.++. .+.|+ -+|+|++.-... .. .....+.+....+..
T Consensus 215 ~~l~d~~~~~~vlV~~p~~~~~~~~~~~~~~l~~--~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 292 (324)
T 3zq6_A 215 EVMSDPERTSFKMVVIPEEMSIYESERAMKALEK--YSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKFSDK 292 (324)
T ss_dssp HHHTCTTTEEEEEEECSSHHHHHHHHHHHHHHHH--TTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHhcCCCCCeEEEEeCCcccHHHHHHHHHHHHHH--CCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHcCCC
Confidence 345554 47888876543222233344444554 56676 588999876421 10 011122222222222
Q ss_pred e--EEEcccCCCCCHHHHHHHHHhh
Q 015293 255 E--VIPVSAKYGHGVEDIRDWILTK 277 (409)
Q Consensus 255 ~--iv~iSA~~g~gi~~L~~~L~~~ 277 (409)
+ .+|.-...-.|++.|......+
T Consensus 293 ~~~~iPl~~~e~~g~~~L~~~~~~l 317 (324)
T 3zq6_A 293 VVAEVPLLKKEAKGIETLEKIAEQL 317 (324)
T ss_dssp EEEEEECCSSCSCSHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCCHHHHHHHHHHH
Confidence 2 4677777778988877665443
No 352
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.27 E-value=0.058 Score=46.67 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=17.7
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|.+|+|||||++.|.+.
T Consensus 7 IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 7 IVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEESCHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 9999999999999999874
No 353
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=90.24 E-value=12 Score=35.66 Aligned_cols=86 Identities=13% Similarity=0.100 Sum_probs=46.3
Q ss_pred cceEEEEeeCCCCCChHHHHHHHHhccCCCCCCE-EEEEecCCCCCh-hh--------HHHHHHHHHhcCCCc--eEEEc
Q 015293 192 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKDLIKP-GE--------IAKKLEWYEKFTDVD--EVIPV 259 (409)
Q Consensus 192 aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~-ilvlNK~Dl~~~-~~--------~~~~~~~~~~~~~~~--~iv~i 259 (409)
.+.+++|.-...............++. .+.|+ -+|+|++..... .. .....+.+....+.. -.+|.
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~--~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~iPl 314 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQK--YGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPL 314 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHH--TTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSEEEEEEC
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHH--CCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCcEEEecC
Confidence 366777775543222233344444555 56776 588999886521 11 011222222222222 34778
Q ss_pred ccCCCCCHHHHHHHHHhhCC
Q 015293 260 SAKYGHGVEDIRDWILTKLP 279 (409)
Q Consensus 260 SA~~g~gi~~L~~~L~~~l~ 279 (409)
....-.|++.|......+..
T Consensus 315 ~~~e~~g~~~L~~~~~~l~~ 334 (349)
T 3ug7_A 315 LRTEAKGIETLKQIAKILYG 334 (349)
T ss_dssp CSSCSCSHHHHHHHHHHHC-
T ss_pred CCCCCCCHHHHHHHHHHHcC
Confidence 88888899888766555443
No 354
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.21 E-value=0.15 Score=46.41 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=17.4
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|.+|+|||||++.|.+.
T Consensus 30 I~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 30 VSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 9999999999999998763
No 355
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.19 E-value=0.12 Score=50.49 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=18.6
Q ss_pred EEecCCCChHHHHHHHhCCc
Q 015293 116 VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~ 135 (409)
|+|++|+|||||++.|.|-.
T Consensus 34 llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 34 LLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EECSTTSSHHHHHHHHHTSS
T ss_pred EECCCCcHHHHHHHHHHcCC
Confidence 99999999999999999854
No 356
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.16 E-value=0.2 Score=44.05 Aligned_cols=19 Identities=37% Similarity=0.553 Sum_probs=18.1
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|.+|+||||+++.|.+.
T Consensus 26 i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 26 ISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEESTTSSHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 9999999999999999886
No 357
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.08 E-value=0.14 Score=50.02 Aligned_cols=19 Identities=42% Similarity=0.468 Sum_probs=17.8
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|++|+|||||++.|.+.
T Consensus 141 ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 141 VTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EECSSSSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 9999999999999999874
No 358
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.07 E-value=0.12 Score=44.25 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=16.7
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|..|+|||||+.+|.+
T Consensus 31 i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 31 IVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999854
No 359
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.95 E-value=0.12 Score=49.58 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=18.0
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|.+|+|||||++.|.|.
T Consensus 176 i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 176 VCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp EEESTTSCHHHHHHHGGGG
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 9999999999999999875
No 360
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.93 E-value=0.11 Score=50.16 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.2
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|-.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 3344 99999999999999999854
No 361
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.90 E-value=0.14 Score=49.79 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=19.7
Q ss_pred CeeE-EEecCCCChHHHHHHHhCC
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
...+ |+|.+|+|||||++.|.+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3344 9999999999999999885
No 362
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=89.75 E-value=1.1 Score=42.77 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=17.7
Q ss_pred EEEecCCCChHHHHHHHhCC
Q 015293 115 SVLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~~ 134 (409)
+|.|+||+|||+|++.+...
T Consensus 48 ll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 48 LLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp EECBCTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 39999999999999998753
No 363
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.69 E-value=0.14 Score=43.57 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=16.8
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.||+||||+.+.|..
T Consensus 8 l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 8 LNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999864
No 364
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.67 E-value=0.17 Score=42.48 Aligned_cols=17 Identities=29% Similarity=0.708 Sum_probs=16.1
Q ss_pred EEecCCCChHHHHHHHh
Q 015293 116 VLGKPNVGKSTLANQMI 132 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~ 132 (409)
|+|+.|+|||||+.+|.
T Consensus 28 I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 28 IIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 99999999999999975
No 365
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.67 E-value=0.19 Score=47.56 Aligned_cols=19 Identities=37% Similarity=0.424 Sum_probs=17.6
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|.+|+|||||++.|.+.
T Consensus 85 I~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 85 IAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEECTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 9999999999999999873
No 366
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.57 E-value=0.18 Score=47.11 Aligned_cols=19 Identities=37% Similarity=0.351 Sum_probs=17.6
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|+||+|||||+..|.+.
T Consensus 40 i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 40 VTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEESTTSSHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHH
Confidence 9999999999999998864
No 367
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.50 E-value=0.16 Score=43.62 Aligned_cols=18 Identities=44% Similarity=0.612 Sum_probs=16.6
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.||+||||+.+.|..
T Consensus 6 i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 6 VTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEECTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 899999999999999864
No 368
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=89.45 E-value=0.24 Score=41.00 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=17.6
Q ss_pred EEEecCCCChHHHHHHHhCC
Q 015293 115 SVLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~~ 134 (409)
+|.|.||+|||++..++...
T Consensus 28 ll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 28 WLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp EEESSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 39999999999999998653
No 369
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=89.43 E-value=0.97 Score=41.24 Aligned_cols=67 Identities=19% Similarity=0.130 Sum_probs=40.5
Q ss_pred CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEE-EEEecCCC
Q 015293 157 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDL 234 (409)
Q Consensus 157 ~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~i-lvlNK~Dl 234 (409)
+.+.++|+|||+..... .+ ....+..+|.+++|+..............+.++. .+.+++ +|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~--~~-------~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~--~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDA--PL-------TVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEE--TNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSH--HH-------HHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHT--TTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchH--HH-------HHHhhccCCeEEEEecCccchHHHHHHHHHHHHh--CCCCEEEEEECCCcc
Confidence 45679999999843211 01 0011236899999998765443333334444444 456776 99999874
No 370
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=89.40 E-value=0.21 Score=43.92 Aligned_cols=18 Identities=44% Similarity=0.556 Sum_probs=16.9
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|.+|+|||||++.|.+
T Consensus 27 i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 27 IDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999875
No 371
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.38 E-value=0.44 Score=51.14 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=21.3
Q ss_pred CCCeeE-EEecCCCChHHHHHHHhCCc
Q 015293 110 HPNHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 110 ~~~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
.+..++ +.|+||+|||+|++++.+.-
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 345666 99999999999999998643
No 372
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.30 E-value=0.16 Score=50.42 Aligned_cols=19 Identities=32% Similarity=0.317 Sum_probs=17.8
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|++|+|||||+++|++.
T Consensus 172 I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 172 VTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EECSTTSCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 9999999999999999874
No 373
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=89.23 E-value=0.14 Score=44.77 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=17.1
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|.+|+||||+.+.|...
T Consensus 23 l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 23 VMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp EECSTTSCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 9999999999999998643
No 374
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=89.22 E-value=0.19 Score=45.79 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=18.9
Q ss_pred eeE-EEecCCCChHHHHHHHhCC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
.++ |.|+||+|||||+.++.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 445 9999999999999999753
No 375
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.19 E-value=0.53 Score=45.85 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=18.6
Q ss_pred CeeE-EEecCCCChHHHHHHHhC
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~ 133 (409)
..++ |.|.||+|||+|+.++..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 3455 999999999999999854
No 376
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.18 E-value=0.11 Score=50.32 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=18.6
Q ss_pred EEecCCCChHHHHHHHhCCc
Q 015293 116 VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~ 135 (409)
|+|++|+|||||++.|.|-.
T Consensus 36 llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 36 ILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EECSCHHHHHHHHHHHHTSS
T ss_pred EECCCCCcHHHHHHHHhCCC
Confidence 99999999999999999854
No 377
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.16 E-value=0.79 Score=45.22 Aligned_cols=19 Identities=32% Similarity=0.523 Sum_probs=17.3
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|.||+||||+.+.|...
T Consensus 263 l~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 263 AVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp EESCTTSSHHHHHHHHTGG
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 9999999999999999753
No 378
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.13 E-value=0.18 Score=43.46 Aligned_cols=18 Identities=39% Similarity=0.684 Sum_probs=16.6
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|.||+||||+.+.|..
T Consensus 10 l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 10 VTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999853
No 379
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=88.99 E-value=0.18 Score=44.24 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=17.2
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|.+|+||||+.+.|.+
T Consensus 7 l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 7 LTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EECSTTSCHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999976
No 380
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.99 E-value=0.23 Score=50.97 Aligned_cols=20 Identities=45% Similarity=0.694 Sum_probs=18.6
Q ss_pred EEecCCCChHHHHHHHhCCc
Q 015293 116 VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~ 135 (409)
|+|+.|+|||||++.|.|.-
T Consensus 30 LiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 30 VLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCcHHHHHHHHhcCC
Confidence 99999999999999999853
No 381
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=88.98 E-value=0.15 Score=45.27 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=16.9
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|.+|+||||+.+.|.+
T Consensus 10 i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 10 IDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999865
No 382
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.97 E-value=0.17 Score=51.51 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=17.9
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|.+|+|||||+++|++.
T Consensus 265 I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 265 VVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp EEESTTSSHHHHHHHHGGG
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 9999999999999999873
No 383
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.96 E-value=0.15 Score=45.09 Aligned_cols=19 Identities=26% Similarity=0.630 Sum_probs=17.5
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|++|+|||||++.|.+.
T Consensus 28 i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 28 LTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHH
Confidence 9999999999999999854
No 384
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=88.95 E-value=0.17 Score=44.29 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=17.2
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|.+|+||||+.+.|.+
T Consensus 6 i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 6 LTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHH
Confidence 999999999999999987
No 385
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=88.82 E-value=0.12 Score=49.98 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.2
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|.+|+|||||++.|.|..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3445 99999999999999998753
No 386
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.77 E-value=0.2 Score=47.85 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=18.8
Q ss_pred eeEEEecCCCChHHHHHHHhCC
Q 015293 113 HKSVLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 113 ~~~ivG~~n~GKSsLln~l~~~ 134 (409)
+-+|+|+||+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3349999999999999999764
No 387
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=88.71 E-value=0.18 Score=43.22 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=16.5
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.||+||||+.+.|..
T Consensus 8 i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 8 VTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999854
No 388
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=88.51 E-value=0.54 Score=45.26 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=18.7
Q ss_pred CeeE-EEecCCCChHHHHHHHhC
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~ 133 (409)
..++ |.|.||+|||+|+.++..
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 3455 999999999999999964
No 389
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=88.48 E-value=0.52 Score=47.67 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=18.7
Q ss_pred CeeE-EEecCCCChHHHHHHHhC
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~ 133 (409)
..++ |.|.||+|||+|+.++..
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHH
Confidence 4456 999999999999999854
No 390
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=88.35 E-value=0.58 Score=44.01 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=39.5
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCE-EEEEecCCCC
Q 015293 159 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKDLI 235 (409)
Q Consensus 159 ~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~-ilvlNK~Dl~ 235 (409)
+.++|+|||+..... + .......+|.+|+|+..............+.++. .+.++ -+|+|++|..
T Consensus 214 yD~VIIDtpp~~~~~-d---------~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~--~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVS-D---------AAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQ--AGVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCT-H---------HHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHH--TTCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhH-H---------HHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHh--CCCCeEEEEEeCCccC
Confidence 358899999854311 1 1122467899999998776554444444444444 34443 3788999864
No 391
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=88.34 E-value=0.3 Score=41.99 Aligned_cols=18 Identities=33% Similarity=0.650 Sum_probs=16.7
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
++|.+|+||||+.+.|..
T Consensus 18 l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 18 LTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 999999999999999864
No 392
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.29 E-value=0.24 Score=43.55 Aligned_cols=18 Identities=44% Similarity=0.287 Sum_probs=17.4
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|+||+|||||+..|.+
T Consensus 25 i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 25 VYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999987
No 393
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=88.23 E-value=0.83 Score=39.47 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=17.1
Q ss_pred EEEecCCCChHHHHHHHhC
Q 015293 115 SVLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~ 133 (409)
+|.|.+|+|||+|+..+..
T Consensus 42 ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 42 LFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3999999999999998865
No 394
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.19 E-value=0.25 Score=50.62 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.4
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|+.|+|||||++.|.|.-
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445 99999999999999999853
No 395
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=88.14 E-value=0.21 Score=43.36 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=16.6
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.+|+||||+.+.|..
T Consensus 5 i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 5 IFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCccCHHHHHHHHHH
Confidence 899999999999999864
No 396
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.13 E-value=0.88 Score=46.15 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=18.0
Q ss_pred eeE-EEecCCCChHHHHHHHhC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~ 133 (409)
..+ |.|+||+|||+++.++..
T Consensus 78 ~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 344 999999999999999865
No 397
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.13 E-value=0.23 Score=48.49 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.0
Q ss_pred CeeE-EEecCCCChHHHHHHHhC
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~ 133 (409)
...+ |+|++|+|||||++.|.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 4445 999999999999999986
No 398
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=88.07 E-value=0.3 Score=42.13 Aligned_cols=19 Identities=26% Similarity=0.672 Sum_probs=17.3
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|.||+||||+.+.|...
T Consensus 15 l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 15 ITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 9999999999999998654
No 399
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=88.07 E-value=0.27 Score=50.78 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=21.4
Q ss_pred CCCeeE-EEecCCCChHHHHHHHhCCc
Q 015293 110 HPNHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 110 ~~~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
.+...+ ++|++|+|||||++.|.|-.
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 344455 99999999999999999854
No 400
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=87.96 E-value=1.4 Score=41.41 Aligned_cols=99 Identities=16% Similarity=0.191 Sum_probs=49.3
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcceeeecCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 191 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~~v~~~~~tt~~~~~~~~~~~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 191 (409)
+.+ +-|+||+|||+++.++...-. ..+.-++..... ...+...+..........
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~----------------------~~~~~i~~~~~~---~~~i~~~~~~~~~~~~~~ 103 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVN----------------------ADMMFVNGSDCK---IDFVRGPLTNFASAASFD 103 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTT----------------------EEEEEEETTTCC---HHHHHTHHHHHHHBCCCS
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhC----------------------CCEEEEcccccC---HHHHHHHHHHHHhhcccC
Confidence 445 556699999999999864321 122333333211 122222111111111112
Q ss_pred cceEEEEeeCCCCCC--hHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 192 ADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 192 aDvillVvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
...-++++|--+... .....+...+.....+.++|++.|..+...
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~ 150 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGII 150 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSC
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccC
Confidence 256677777655543 223344444443224577888888776443
No 401
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=87.89 E-value=0.24 Score=49.75 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=20.2
Q ss_pred CCeeE-EEecCCCChHHHHHHHhCC
Q 015293 111 PNHKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 111 ~~~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
....+ |+|+.|+|||||++.|.|-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 34455 9999999999999999875
No 402
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=87.85 E-value=0.3 Score=44.63 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=16.6
Q ss_pred EEecCCCChHHHHHHHh
Q 015293 116 VLGKPNVGKSTLANQMI 132 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~ 132 (409)
|+|.+|+||||+++.|.
T Consensus 32 I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 32 VDGPSGAGKGTLCKALA 48 (252)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 99999999999999998
No 403
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=87.81 E-value=0.23 Score=42.61 Aligned_cols=18 Identities=39% Similarity=0.650 Sum_probs=16.6
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|.||+||||+.+.|..
T Consensus 9 l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 9 FLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999863
No 404
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.64 E-value=0.25 Score=44.43 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=17.8
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|.|..|+|||||++.|.+.
T Consensus 25 i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 25 IEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EECSTTSCHHHHHHTTGGG
T ss_pred EECCCCCCHHHHHHHHHhc
Confidence 9999999999999999875
No 405
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=87.39 E-value=0.31 Score=50.74 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=20.3
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|++|+|||||++.|.|-.
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3344 99999999999999999854
No 406
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=87.38 E-value=1.2 Score=44.35 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=19.8
Q ss_pred CCeeE-EEecCCCChHHHHHHHhCC
Q 015293 111 PNHKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 111 ~~~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
+.+++ |.|+||+|||+|+.++...
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 34556 9999999999999998753
No 407
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=87.34 E-value=0.52 Score=42.50 Aligned_cols=43 Identities=7% Similarity=0.042 Sum_probs=25.1
Q ss_pred cceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 192 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 192 aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
.+.-++++|-..............+.. .+.|+|+++-..|-..
T Consensus 88 ~~~dvViIDEaQ~l~~~~ve~l~~L~~--~gi~Vil~Gl~~df~~ 130 (223)
T 2b8t_A 88 DETKVIGIDEVQFFDDRICEVANILAE--NGFVVIISGLDKNFKG 130 (223)
T ss_dssp TTCCEEEECSGGGSCTHHHHHHHHHHH--TTCEEEEECCSBCTTS
T ss_pred CCCCEEEEecCccCcHHHHHHHHHHHh--CCCeEEEEeccccccC
Confidence 345567788665443222222333333 5789999998888643
No 408
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=87.32 E-value=0.29 Score=47.26 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.3
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|.+|+|||||++.|.|..
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444 99999999999999998864
No 409
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=87.24 E-value=0.29 Score=50.57 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=20.8
Q ss_pred CCeeE-EEecCCCChHHHHHHHhCCc
Q 015293 111 PNHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 111 ~~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
+...+ ++|++|+|||||++.|.|-.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34445 99999999999999999854
No 410
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.17 E-value=0.23 Score=44.41 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=17.7
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|++|+|||||+..|.+.
T Consensus 29 i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 29 MFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHH
Confidence 9999999999999999873
No 411
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.09 E-value=0.3 Score=50.72 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=21.5
Q ss_pred CCCeeE-EEecCCCChHHHHHHHhCCc
Q 015293 110 HPNHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 110 ~~~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
.+...+ ++|++|+|||||++.|.|--
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 344555 99999999999999999854
No 412
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=87.01 E-value=0.28 Score=50.91 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=21.4
Q ss_pred CCCeeE-EEecCCCChHHHHHHHhCCc
Q 015293 110 HPNHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 110 ~~~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
.+...+ ++|++|+|||||++.|.|--
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 344455 99999999999999999854
No 413
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=86.98 E-value=0.27 Score=42.11 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=16.5
Q ss_pred EEEecCCCChHHHHHHHh
Q 015293 115 SVLGKPNVGKSTLANQMI 132 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~ 132 (409)
+++|.+|+||||+...|.
T Consensus 9 ~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 9 YLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 399999999999999985
No 414
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=86.92 E-value=0.37 Score=41.13 Aligned_cols=18 Identities=22% Similarity=0.363 Sum_probs=16.8
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|.+|+||||+.+.|.+
T Consensus 10 l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 10 LTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999865
No 415
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=86.92 E-value=0.27 Score=42.88 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=16.7
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.||+||||+.+.|..
T Consensus 9 i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 9 FEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 999999999999999864
No 416
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=86.86 E-value=0.16 Score=44.68 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=16.7
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.+|+||||+++.|..
T Consensus 5 i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 5 IEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 899999999999999864
No 417
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=86.70 E-value=0.29 Score=41.84 Aligned_cols=17 Identities=41% Similarity=0.812 Sum_probs=16.3
Q ss_pred EEecCCCChHHHHHHHh
Q 015293 116 VLGKPNVGKSTLANQMI 132 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~ 132 (409)
|+|.||+||||+.+.|.
T Consensus 16 i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 16 LTGTPGVGKTTLGKELA 32 (180)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHH
Confidence 99999999999999986
No 418
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=86.61 E-value=0.35 Score=50.35 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.3
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|+.|+|||||++.|.|.-
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3444 99999999999999999854
No 419
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=86.58 E-value=0.37 Score=45.27 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=17.1
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|.+|+|||||++.|.+.
T Consensus 36 I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 36 FSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 9999999999999988653
No 420
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=86.50 E-value=0.3 Score=41.58 Aligned_cols=18 Identities=39% Similarity=0.466 Sum_probs=16.5
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|.||+||||+...|..
T Consensus 9 i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 9 FIGFMGSGKSTLARALAK 26 (175)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 999999999999999854
No 421
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=86.44 E-value=0.44 Score=42.28 Aligned_cols=19 Identities=26% Similarity=0.393 Sum_probs=16.9
Q ss_pred EEEecCCCChHHHHHHHhC
Q 015293 115 SVLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~ 133 (409)
+|+|.||+||||+.+.|..
T Consensus 9 ~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 9 MISGAPASGKGTQCELIKT 27 (222)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3999999999999999863
No 422
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=86.42 E-value=0.88 Score=45.82 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=19.2
Q ss_pred eeE-EEecCCCChHHHHHHHhCC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
.++ |+|+||+|||+|++++.+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 456 9999999999999999863
No 423
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=86.31 E-value=1.1 Score=40.03 Aligned_cols=68 Identities=16% Similarity=0.101 Sum_probs=41.9
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCC-CCCCEEEEEecCCCCCh
Q 015293 159 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK-DKLPILLVLNKKDLIKP 237 (409)
Q Consensus 159 ~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~-~~~p~ilvlNK~Dl~~~ 237 (409)
+.++++|||+..... ....+..||.+++|+......-.....+.+.++... ....+-+|+|+++....
T Consensus 119 yD~viiD~p~~~~~~-----------~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~ 187 (245)
T 3ea0_A 119 YDYIIVDFGASIDHV-----------GVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSR 187 (245)
T ss_dssp CSEEEEEEESSCCTT-----------HHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTT
T ss_pred CCEEEEeCCCCCchH-----------HHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCC
Confidence 568999999843211 223467899999999875332222233444444322 24568899999996543
No 424
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=86.27 E-value=0.33 Score=42.45 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=16.7
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.+|+||||+.+.|..
T Consensus 15 l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 15 FEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 999999999999999864
No 425
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=86.21 E-value=0.29 Score=45.82 Aligned_cols=18 Identities=28% Similarity=0.595 Sum_probs=16.8
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.||+||||+...|..
T Consensus 38 l~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 38 LGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EECCTTSCTHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999964
No 426
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=86.20 E-value=0.31 Score=42.94 Aligned_cols=18 Identities=44% Similarity=0.741 Sum_probs=16.4
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.||+||||+.+.|..
T Consensus 5 l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 5 LMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 899999999999999853
No 427
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=86.17 E-value=0.39 Score=42.47 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=17.2
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|.|.||+|||+|+..+...
T Consensus 57 l~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 57 LWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 9999999999999998653
No 428
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=86.11 E-value=0.37 Score=42.58 Aligned_cols=17 Identities=29% Similarity=0.708 Sum_probs=16.0
Q ss_pred EEecCCCChHHHHHHHh
Q 015293 116 VLGKPNVGKSTLANQMI 132 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~ 132 (409)
|+|+.|+||||++++|.
T Consensus 28 I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 28 IIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHH
Confidence 99999999999999974
No 429
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=86.06 E-value=0.32 Score=41.68 Aligned_cols=18 Identities=39% Similarity=0.715 Sum_probs=16.3
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.||+||||+.+.|..
T Consensus 8 l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 8 VLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999998853
No 430
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=86.00 E-value=0.35 Score=41.63 Aligned_cols=18 Identities=33% Similarity=0.673 Sum_probs=16.5
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|.||+||||+.+.|..
T Consensus 14 l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 14 VVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999853
No 431
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=85.99 E-value=0.42 Score=42.37 Aligned_cols=18 Identities=33% Similarity=0.595 Sum_probs=16.5
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|.||+||||+.+.|..
T Consensus 9 l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 9 LIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999854
No 432
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.91 E-value=1.9 Score=46.67 Aligned_cols=22 Identities=23% Similarity=0.616 Sum_probs=18.7
Q ss_pred eeEEEecCCCChHHHHHHHhCC
Q 015293 113 HKSVLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 113 ~~~ivG~~n~GKSsLln~l~~~ 134 (409)
+.+|+|.||+|||+|+..+...
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHH
Confidence 3449999999999999998754
No 433
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=85.88 E-value=0.29 Score=46.75 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=16.7
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|.+|+|||||++.|.+
T Consensus 97 I~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 97 IAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999865
No 434
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=85.87 E-value=0.28 Score=49.52 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=17.1
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|++|+|||||++.|.|
T Consensus 34 liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 34 LSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHhc
Confidence 999999999999999975
No 435
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=85.75 E-value=0.34 Score=42.75 Aligned_cols=18 Identities=28% Similarity=0.667 Sum_probs=16.4
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|.||+||||+.+.|..
T Consensus 5 l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 5 LMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 899999999999999853
No 436
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=85.73 E-value=0.6 Score=40.50 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=21.7
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCcceee
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQKLSIV 139 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~~~~v 139 (409)
..++ |.|++|+|||||.-.|.......+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~rG~~lv 44 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDRGHQLV 44 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHTTCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcCCeEe
Confidence 3556 999999999999999976544333
No 437
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=85.65 E-value=0.26 Score=50.90 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=21.3
Q ss_pred CCCeeE-EEecCCCChHHHHHHHhCCc
Q 015293 110 HPNHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 110 ~~~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
.+...+ ++|++|+|||||++.|.|--
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 344555 99999999999999998854
No 438
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=85.63 E-value=0.35 Score=42.02 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=17.4
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|.|.+|+||||+.+.|...
T Consensus 9 l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 9 FEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp EECCTTSSHHHHHHHHHHT
T ss_pred EEcCCCCCHHHHHHHHHHH
Confidence 9999999999999999754
No 439
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=85.59 E-value=0.37 Score=42.14 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=16.7
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.+|+||||+.+.|..
T Consensus 14 l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 14 LEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999864
No 440
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=85.53 E-value=0.35 Score=41.64 Aligned_cols=18 Identities=28% Similarity=0.237 Sum_probs=16.6
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.+|+||||+.+.|..
T Consensus 5 l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 5 FEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 899999999999999864
No 441
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=85.53 E-value=0.37 Score=42.95 Aligned_cols=18 Identities=28% Similarity=0.704 Sum_probs=16.6
Q ss_pred EEEecCCCChHHHHHHHh
Q 015293 115 SVLGKPNVGKSTLANQMI 132 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~ 132 (409)
+|.|.||+||||+.+.|.
T Consensus 11 ~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 11 VIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp EEEECTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 399999999999999986
No 442
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=85.51 E-value=0.97 Score=42.18 Aligned_cols=67 Identities=15% Similarity=0.121 Sum_probs=41.5
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 159 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 159 ~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
+.++|+|||+..... .+......||.+|+|+..............+.+... ....+-+|+|++|...
T Consensus 202 yD~VIIDtpp~~~~~----------da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~-g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 202 YDLVLIDTPPILAVT----------DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQN-GIPVKGVILNSIFRRA 268 (286)
T ss_dssp CSEEEEECCCTTTCT----------HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHT-TCCCCEEEEEEECCCC
T ss_pred CCEEEEcCCCCcchH----------HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhC-CCCEEEEEEcCccccc
Confidence 358999999864311 122335679999999998765444333444444441 2234568899998653
No 443
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=85.50 E-value=0.35 Score=41.45 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=16.5
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.+|+||||+.+.|..
T Consensus 5 l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 5 FEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EECSTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 899999999999999864
No 444
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=85.48 E-value=0.39 Score=41.48 Aligned_cols=18 Identities=28% Similarity=0.695 Sum_probs=16.6
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.||+||||+.+.|..
T Consensus 17 l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 17 IIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999864
No 445
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=85.44 E-value=0.54 Score=40.65 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=17.6
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|.+|+||||+.+.|...
T Consensus 13 i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 13 ITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEECTTSCHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHC
Confidence 9999999999999999764
No 446
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=85.33 E-value=0.56 Score=40.79 Aligned_cols=18 Identities=39% Similarity=0.737 Sum_probs=16.5
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.+|+||||+.+.|..
T Consensus 20 l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 20 VLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999863
No 447
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=85.28 E-value=0.32 Score=50.35 Aligned_cols=26 Identities=38% Similarity=0.452 Sum_probs=21.4
Q ss_pred CCCeeE-EEecCCCChHHHHHHHhCCc
Q 015293 110 HPNHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 110 ~~~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
.+...+ ++|++|+|||||++.|.|--
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 344555 99999999999999998854
No 448
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=85.22 E-value=0.4 Score=40.97 Aligned_cols=18 Identities=39% Similarity=0.676 Sum_probs=16.5
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.||+||||+.+.|..
T Consensus 11 l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 11 VLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999854
No 449
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=85.19 E-value=0.51 Score=40.99 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=17.7
Q ss_pred eE-EEecCCCChHHHHHHHhC
Q 015293 114 KS-VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 114 ~~-ivG~~n~GKSsLln~l~~ 133 (409)
.+ |.|.||+|||+|+.++..
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 44 999999999999999875
No 450
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=85.17 E-value=0.35 Score=43.21 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=16.5
Q ss_pred eeE-EEecCCCChHHHHHHHh
Q 015293 113 HKS-VLGKPNVGKSTLANQMI 132 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~ 132 (409)
+.+ +.|+||+||||++.+|.
T Consensus 59 n~ili~GPPGtGKTt~a~ala 79 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFI 79 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 344 99999999998887775
No 451
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.16 E-value=0.39 Score=40.53 Aligned_cols=20 Identities=30% Similarity=0.604 Sum_probs=17.4
Q ss_pred EEEecCCCChHHHHHHHhCC
Q 015293 115 SVLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~~ 134 (409)
+|.|.||+|||+|+..+...
T Consensus 47 ll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 47 ILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EEESCGGGCHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 49999999999999988653
No 452
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=85.16 E-value=0.37 Score=40.58 Aligned_cols=18 Identities=17% Similarity=0.438 Sum_probs=16.4
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.+|+||||+.+.|..
T Consensus 7 l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 7 MVGARGCGMTTVGRELAR 24 (173)
T ss_dssp EESCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999853
No 453
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=84.94 E-value=0.38 Score=44.12 Aligned_cols=18 Identities=39% Similarity=0.674 Sum_probs=16.7
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.||+||||+.+.|..
T Consensus 9 l~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 9 LTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 999999999999999864
No 454
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=84.94 E-value=0.11 Score=47.05 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=18.1
Q ss_pred EEecCCCChHHHHHHHhCCc
Q 015293 116 VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~ 135 (409)
|+|++|+|||||+++|.+.-
T Consensus 32 i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 32 LSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHSCCSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhccc
Confidence 89999999999999998743
No 455
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=84.94 E-value=0.97 Score=41.04 Aligned_cols=69 Identities=20% Similarity=0.170 Sum_probs=39.5
Q ss_pred CCeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhcc----CCCCCCEE-EEEec
Q 015293 157 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGD----HKDKLPIL-LVLNK 231 (409)
Q Consensus 157 ~~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~----~~~~~p~i-lvlNK 231 (409)
..+.++++|||+..... ...++..||.+++++......-.....+.+.+.. ...+.+++ +|+|+
T Consensus 110 ~~yD~iiiD~pp~~~~~-----------~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~ 178 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL-----------TLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTM 178 (257)
T ss_dssp TTCSEEEEECCSSCCHH-----------HHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEES
T ss_pred cCCCEEEEeCCCCCCHH-----------HHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEe
Confidence 34778999999853211 1223457899999998764321111122222211 12456664 89999
Q ss_pred CCCCC
Q 015293 232 KDLIK 236 (409)
Q Consensus 232 ~Dl~~ 236 (409)
+|...
T Consensus 179 ~~~~~ 183 (257)
T 1wcv_1 179 YDGRT 183 (257)
T ss_dssp BCTTC
T ss_pred ECCCc
Confidence 98653
No 456
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=84.93 E-value=0.42 Score=45.73 Aligned_cols=20 Identities=25% Similarity=0.561 Sum_probs=17.4
Q ss_pred eeE--EEecCCCChHHHHHHHh
Q 015293 113 HKS--VLGKPNVGKSTLANQMI 132 (409)
Q Consensus 113 ~~~--ivG~~n~GKSsLln~l~ 132 (409)
.++ |+|+.|+|||||+++|.
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 355 99999999999999974
No 457
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=84.93 E-value=0.74 Score=40.84 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=20.3
Q ss_pred eeE-EEecCCCChHHHHHHHhCCcce
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQKLS 137 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~~~ 137 (409)
.++ |+|++|+|||+|...|...-..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~~ 60 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGHR 60 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTCE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCCe
Confidence 445 9999999999999999865433
No 458
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=84.90 E-value=0.29 Score=41.68 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=12.2
Q ss_pred EEecCCCChHHHHHHHh
Q 015293 116 VLGKPNVGKSTLANQMI 132 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~ 132 (409)
|.|.||+||||+.+.|.
T Consensus 10 l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 10 INGPFGVGKTHTAHTLH 26 (183)
T ss_dssp EECCC----CHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 99999999999999985
No 459
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=84.89 E-value=0.39 Score=41.81 Aligned_cols=18 Identities=39% Similarity=0.628 Sum_probs=16.5
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|.||+||||+.+.|..
T Consensus 25 l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 25 LLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999854
No 460
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=84.81 E-value=0.54 Score=41.41 Aligned_cols=18 Identities=39% Similarity=0.431 Sum_probs=16.7
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|.+|+||||+.+.|.+
T Consensus 30 ~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 30 LTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999865
No 461
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=84.81 E-value=0.39 Score=40.27 Aligned_cols=18 Identities=28% Similarity=0.349 Sum_probs=16.4
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.+|+||||+.+.|..
T Consensus 5 l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 5 LIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EESCTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 899999999999999854
No 462
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=84.76 E-value=0.97 Score=40.74 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=40.2
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCC-------CCCCEEEEEe
Q 015293 158 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK-------DKLPILLVLN 230 (409)
Q Consensus 158 ~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~-------~~~p~ilvlN 230 (409)
.+.++++|||+-... .....+..||.+++|++.....-.....+.+.+.... ...++.+|+|
T Consensus 113 ~yD~viiD~p~~~~~-----------~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N 181 (260)
T 3q9l_A 113 DFEFIVCDSPAGIET-----------GALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLT 181 (260)
T ss_dssp TCSEEEEECCSSSSH-----------HHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEE
T ss_pred CCCEEEEcCCCCCCH-----------HHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEe
Confidence 477999999984321 1233466899999999875332222233344444321 1246789999
Q ss_pred cCCC
Q 015293 231 KKDL 234 (409)
Q Consensus 231 K~Dl 234 (409)
++|.
T Consensus 182 ~~~~ 185 (260)
T 3q9l_A 182 RYNP 185 (260)
T ss_dssp EECH
T ss_pred cCCc
Confidence 9984
No 463
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=84.70 E-value=0.38 Score=44.46 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=17.1
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|++|+|||||+..+.+
T Consensus 35 i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 35 LVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 999999999999999886
No 464
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=84.69 E-value=0.53 Score=42.24 Aligned_cols=18 Identities=39% Similarity=0.719 Sum_probs=16.4
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|+||+||+|....|..
T Consensus 34 llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 34 VLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EECCTTCCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 899999999999998864
No 465
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=84.55 E-value=0.42 Score=40.87 Aligned_cols=18 Identities=33% Similarity=0.660 Sum_probs=16.3
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|.||+||||+...|..
T Consensus 7 l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 7 LVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999998853
No 466
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=84.53 E-value=0.41 Score=43.81 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=16.6
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|.+|+|||||...|..
T Consensus 6 I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 6 IYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHh
Confidence 899999999999999864
No 467
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=84.49 E-value=0.69 Score=43.92 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=23.1
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCcceeeec
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQKLSIVTN 141 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~~~~v~~ 141 (409)
..++ ++|.+|+||||+...|+......+++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~d 174 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKRGHRLVAD 174 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHTTCEEEES
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhcCCceecC
Confidence 3455 99999999999999998765443433
No 468
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=84.46 E-value=0.45 Score=48.74 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=20.1
Q ss_pred eeE-EEecCCCChHHHHHHHhCCc
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
..+ |+|+.|+|||||++.|.|-.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 344 99999999999999999864
No 469
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=84.33 E-value=0.46 Score=41.92 Aligned_cols=18 Identities=39% Similarity=0.617 Sum_probs=16.4
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.||+||||+.+.|..
T Consensus 5 l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 5 LLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 899999999999999854
No 470
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=84.31 E-value=2.3 Score=39.33 Aligned_cols=68 Identities=16% Similarity=0.098 Sum_probs=39.4
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhcc----CCCCCCE-EEEEecC
Q 015293 158 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGD----HKDKLPI-LLVLNKK 232 (409)
Q Consensus 158 ~~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~----~~~~~p~-ilvlNK~ 232 (409)
.+.++++|||+..... ...++..||.+++++......-.....+.+.+.. +..+.++ -+|+|+.
T Consensus 154 ~yD~IiiD~pp~~~~~-----------~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~ 222 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY-----------TNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLV 222 (298)
T ss_dssp GCSEEEEEECSSCSHH-----------HHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEES
T ss_pred CCCEEEEECCCCccHH-----------HHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEE
Confidence 3578999999853311 1122345999999998765442222222222221 1235664 4899999
Q ss_pred CCCC
Q 015293 233 DLIK 236 (409)
Q Consensus 233 Dl~~ 236 (409)
|...
T Consensus 223 ~~~~ 226 (298)
T 2oze_A 223 DTDS 226 (298)
T ss_dssp CTTC
T ss_pred CCCc
Confidence 9754
No 471
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=84.04 E-value=0.41 Score=47.73 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=20.2
Q ss_pred CeeE-EEecCCCChHHHHHHHhCCc
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
...+ |+|.+|+|||||++.|.|..
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3444 99999999999999998854
No 472
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=83.82 E-value=0.64 Score=42.11 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=16.7
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.||+||||+...|..
T Consensus 34 l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 34 FLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999963
No 473
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=83.81 E-value=0.7 Score=42.98 Aligned_cols=18 Identities=44% Similarity=0.756 Sum_probs=16.1
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|+||+|||+|+.++..
T Consensus 72 l~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 72 FTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999987654
No 474
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=83.74 E-value=0.75 Score=41.07 Aligned_cols=63 Identities=17% Similarity=0.212 Sum_probs=38.2
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCC
Q 015293 159 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 233 (409)
Q Consensus 159 ~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~D 233 (409)
+.++++|||+..... ....+..||.+++|+..+...-.....+.+.+... .-..+.+|+|+++
T Consensus 132 yD~viiD~pp~~~~~-----------~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~-~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 132 KEAVVMDMGAGIEHL-----------TRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDL-GIKKVRYVINKVR 194 (254)
T ss_dssp CSEEEEEECTTCTTC-----------CHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHH-TCSCEEEEEEEEC
T ss_pred CCEEEEeCCCcccHH-----------HHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHc-CCccEEEEEeCCC
Confidence 568999999743211 12336789999999987533222222233333331 2256789999998
No 475
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=83.70 E-value=0.45 Score=48.72 Aligned_cols=20 Identities=35% Similarity=0.740 Sum_probs=18.7
Q ss_pred EEecCCCChHHHHHHHhCCc
Q 015293 116 VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~ 135 (409)
|+|+.|+|||||++.|.|-.
T Consensus 299 i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 299 ILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 99999999999999999854
No 476
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=83.64 E-value=1.9 Score=46.31 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=20.6
Q ss_pred CCeeE-EEecCCCChHHHHHHHhCCc
Q 015293 111 PNHKS-VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 111 ~~~~~-ivG~~n~GKSsLln~l~~~~ 135 (409)
+..++ +.|+||+|||.|..++.+.-
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTT
T ss_pred CCceEEEecCCCCCchHHHHHHHHHh
Confidence 34556 99999999999999997654
No 477
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=83.46 E-value=0.32 Score=44.36 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=16.7
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
++|.||+||||+...|..
T Consensus 37 l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 37 LGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp EESCGGGTTHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999864
No 478
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=83.44 E-value=0.49 Score=42.23 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=16.4
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.||+||||+.+.|..
T Consensus 5 l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 5 IFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 899999999999999853
No 479
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=83.21 E-value=0.52 Score=41.83 Aligned_cols=18 Identities=39% Similarity=0.647 Sum_probs=16.5
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|+||+||+|....|..
T Consensus 5 l~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 5 FLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 899999999999999864
No 480
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=83.06 E-value=0.61 Score=43.36 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=18.9
Q ss_pred CeeE-EEecCCCChHHHHHHHhCC
Q 015293 112 NHKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 112 ~~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
...+ |.|+||+|||+++..|.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 3445 9999999999999998753
No 481
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=83.04 E-value=0.57 Score=47.53 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=19.2
Q ss_pred eeE-EEecCCCChHHHHHHHhCC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
.++ |+|+||+|||+|++++.+.
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 456 9999999999999999764
No 482
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.02 E-value=0.61 Score=44.47 Aligned_cols=19 Identities=16% Similarity=0.464 Sum_probs=17.4
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|.|++|+|||||++.+.+.
T Consensus 50 i~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 50 IYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp EEECTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 9999999999999998763
No 483
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=82.95 E-value=0.57 Score=41.77 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=16.0
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|+||+|||||+..+..
T Consensus 28 i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 28 LSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999877754
No 484
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=82.87 E-value=0.38 Score=43.94 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=18.6
Q ss_pred eeE-EEecCCCChHHHHHHHhCC
Q 015293 113 HKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 113 ~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
.++ |.|+||+|||+|+.++...
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 445 8999999999999998753
No 485
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=82.81 E-value=0.48 Score=43.47 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=16.7
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|.+|+||||+.+.|.+
T Consensus 53 l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 53 LVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp EECSTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999864
No 486
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=82.78 E-value=0.58 Score=41.43 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=16.4
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|.||+||||+.+.|..
T Consensus 10 l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 10 LIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999853
No 487
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=82.57 E-value=0.53 Score=48.93 Aligned_cols=20 Identities=25% Similarity=0.625 Sum_probs=18.8
Q ss_pred EEecCCCChHHHHHHHhCCc
Q 015293 116 VLGKPNVGKSTLANQMIGQK 135 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~~ 135 (409)
|+|+.|+|||||++.|.|-.
T Consensus 387 i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 387 IVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 99999999999999999864
No 488
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=82.54 E-value=0.55 Score=41.42 Aligned_cols=18 Identities=39% Similarity=0.483 Sum_probs=16.9
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.+|+||||+.+.|..
T Consensus 9 i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 9 LTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999965
No 489
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=82.46 E-value=0.57 Score=39.42 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=16.4
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.+|+||||+...|..
T Consensus 12 l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 12 LIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EESCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999998853
No 490
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=82.16 E-value=0.6 Score=40.91 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=16.6
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.+|+|||||+..+..
T Consensus 50 l~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 50 FSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EECSTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999864
No 491
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=82.07 E-value=0.6 Score=42.02 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=16.8
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|.|.+|+||||+++.|..
T Consensus 31 i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 31 FEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 999999999999999865
No 492
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=81.92 E-value=0.7 Score=44.75 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=17.4
Q ss_pred eeE--EEecCCCChHHHHHHHh
Q 015293 113 HKS--VLGKPNVGKSTLANQMI 132 (409)
Q Consensus 113 ~~~--ivG~~n~GKSsLln~l~ 132 (409)
.++ |+|.+|+|||+|+.+|.
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 355 99999999999999974
No 493
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=81.90 E-value=0.76 Score=42.51 Aligned_cols=19 Identities=26% Similarity=0.550 Sum_probs=17.0
Q ss_pred EEEecCCCChHHHHHHHhC
Q 015293 115 SVLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 115 ~ivG~~n~GKSsLln~l~~ 133 (409)
++.|+||+|||+++.++..
T Consensus 54 ll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 54 LMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3999999999999999864
No 494
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=81.73 E-value=1.1 Score=39.84 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=39.6
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHHhhcCcceEEEEeeCCCCCChHHHHHHHHhccCCCCCCEEEEEecCCCCC
Q 015293 159 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 236 (409)
Q Consensus 159 ~~i~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aDvillVvD~~~~~~~~~~~l~~~l~~~~~~~p~ilvlNK~Dl~~ 236 (409)
+.++++|||+.... .....+..+|.+++|+......-.....+.+.++.. ...+.-+|+|+++...
T Consensus 112 yD~viiD~~~~~~~-----------~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~-~~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 112 FDFILIDCPAGLQL-----------DAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKA-GLAILGFVLNRYGRSD 177 (237)
T ss_dssp CSEEEEECCSSSSH-----------HHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHT-TCEEEEEEEEEETSCT
T ss_pred CCEEEEECCCCcCH-----------HHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhC-CCceEEEEEecCCccc
Confidence 57899999984321 123446789999999987532222222333333331 2244668999998643
No 495
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=81.64 E-value=0.53 Score=53.49 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=0.0
Q ss_pred CCCeeE-EEecCCCChHHHHHHHhC
Q 015293 110 HPNHKS-VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 110 ~~~~~~-ivG~~n~GKSsLln~l~~ 133 (409)
++...+ |||++|+|||||++.|.+
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhc
No 496
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=81.63 E-value=2.5 Score=45.36 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=20.1
Q ss_pred CCeeE-EEecCCCChHHHHHHHhCC
Q 015293 111 PNHKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 111 ~~~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
+..++ |+|+||+|||||+.+|.+.
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34455 9999999999999999764
No 497
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=81.45 E-value=0.62 Score=44.17 Aligned_cols=17 Identities=24% Similarity=0.516 Sum_probs=16.5
Q ss_pred EEecCCCChHHHHHHHh
Q 015293 116 VLGKPNVGKSTLANQMI 132 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~ 132 (409)
|+|..|+|||||+.+|.
T Consensus 29 i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 29 IVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EECCTTTCSTHHHHHHH
T ss_pred EECCCCCcHHHHHHHHH
Confidence 99999999999999987
No 498
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=81.38 E-value=0.61 Score=44.93 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=17.8
Q ss_pred EEecCCCChHHHHHHHhCC
Q 015293 116 VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~~ 134 (409)
|+|.+|+|||||+..|.+.
T Consensus 136 I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 136 VFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEESTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 9999999999999999874
No 499
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=81.38 E-value=0.79 Score=44.11 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=19.8
Q ss_pred CCeeE-EEecCCCChHHHHHHHhCC
Q 015293 111 PNHKS-VLGKPNVGKSTLANQMIGQ 134 (409)
Q Consensus 111 ~~~~~-ivG~~n~GKSsLln~l~~~ 134 (409)
+.+++ |.|+||+|||+|+.++...
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHH
Confidence 34556 9999999999999998753
No 500
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=81.06 E-value=0.66 Score=43.12 Aligned_cols=18 Identities=44% Similarity=0.702 Sum_probs=16.9
Q ss_pred EEecCCCChHHHHHHHhC
Q 015293 116 VLGKPNVGKSTLANQMIG 133 (409)
Q Consensus 116 ivG~~n~GKSsLln~l~~ 133 (409)
|+|.||+||||+.+.|..
T Consensus 7 l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 7 TIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 999999999999999975
Done!