Query 015296
Match_columns 409
No_of_seqs 218 out of 2287
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 04:58:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0448 GlgC ADP-glucose pyrop 100.0 3.5E-55 7.5E-60 430.7 24.8 297 86-408 2-392 (393)
2 KOG1322 GDP-mannose pyrophosph 100.0 7.7E-55 1.7E-59 414.9 24.0 290 82-404 3-371 (371)
3 PLN02241 glucose-1-phosphate a 100.0 2.7E-50 5.9E-55 414.5 34.6 322 87-409 1-436 (436)
4 PRK02862 glgC glucose-1-phosph 100.0 3.9E-49 8.5E-54 405.1 32.9 321 87-409 1-429 (429)
5 PRK00844 glgC glucose-1-phosph 100.0 4.8E-44 1E-48 365.2 32.7 292 86-403 2-407 (407)
6 PRK05293 glgC glucose-1-phosph 100.0 3E-43 6.5E-48 355.9 30.9 287 87-409 1-379 (380)
7 PRK00725 glgC glucose-1-phosph 100.0 4.9E-43 1.1E-47 359.6 31.4 296 83-403 9-419 (425)
8 COG1208 GCD1 Nucleoside-diphos 100.0 3.1E-41 6.8E-46 338.4 29.8 280 89-409 1-357 (358)
9 TIGR02092 glgD glucose-1-phosp 100.0 3E-39 6.5E-44 325.6 27.0 267 88-375 1-356 (369)
10 TIGR02091 glgC glucose-1-phosp 100.0 1.3E-37 2.8E-42 312.6 26.9 262 92-374 1-361 (361)
11 PRK14359 glmU bifunctional N-a 100.0 1.3E-35 2.9E-40 304.4 30.4 306 89-409 2-400 (430)
12 TIGR01208 rmlA_long glucose-1- 100.0 2.4E-35 5.2E-40 295.5 29.3 261 91-373 1-338 (353)
13 PRK14355 glmU bifunctional N-a 100.0 2.7E-35 5.8E-40 305.1 28.8 318 87-409 1-430 (459)
14 PRK14352 glmU bifunctional N-a 100.0 1.4E-34 3E-39 301.6 28.6 313 89-409 4-432 (482)
15 PRK14353 glmU bifunctional N-a 100.0 2.9E-34 6.3E-39 296.1 28.8 313 85-409 1-413 (446)
16 TIGR01173 glmU UDP-N-acetylglu 100.0 6.2E-34 1.3E-38 293.5 26.9 307 90-409 1-423 (451)
17 PRK09451 glmU bifunctional N-a 100.0 3.5E-34 7.5E-39 296.5 25.0 313 86-409 2-427 (456)
18 COG1207 GlmU N-acetylglucosami 100.0 8.8E-34 1.9E-38 279.6 24.8 314 89-409 2-430 (460)
19 PRK14356 glmU bifunctional N-a 100.0 1.1E-32 2.4E-37 285.0 29.6 314 88-409 4-431 (456)
20 PRK14358 glmU bifunctional N-a 100.0 3.4E-33 7.5E-38 290.9 25.5 317 88-409 6-432 (481)
21 PRK14354 glmU bifunctional N-a 100.0 3.6E-32 7.7E-37 281.3 26.6 314 88-409 1-426 (458)
22 PRK14357 glmU bifunctional N-a 100.0 1.1E-30 2.4E-35 269.5 26.4 303 90-409 1-416 (448)
23 KOG1461 Translation initiation 100.0 1.3E-30 2.9E-35 266.1 23.9 287 88-409 23-423 (673)
24 PRK14360 glmU bifunctional N-a 100.0 1.4E-29 2.9E-34 261.5 27.4 308 90-409 2-423 (450)
25 KOG1460 GDP-mannose pyrophosph 100.0 3.5E-30 7.5E-35 242.7 19.3 255 89-375 2-358 (407)
26 KOG1462 Translation initiation 100.0 9.2E-28 2E-32 233.6 15.2 253 87-374 7-402 (433)
27 COG1209 RfbA dTDP-glucose pyro 99.9 3.8E-27 8.2E-32 221.6 14.6 209 90-316 1-284 (286)
28 PF00483 NTP_transferase: Nucl 99.9 5.6E-26 1.2E-30 215.8 16.5 164 91-254 1-247 (248)
29 TIGR01105 galF UTP-glucose-1-p 99.9 1E-25 2.3E-30 220.7 18.5 163 87-252 1-276 (297)
30 PRK10122 GalU regulator GalF; 99.9 2.1E-25 4.5E-30 218.8 18.9 167 87-255 1-280 (297)
31 cd06425 M1P_guanylylT_B_like_N 99.9 2.2E-24 4.7E-29 203.8 17.5 157 90-253 1-233 (233)
32 cd02541 UGPase_prokaryotic Pro 99.9 2.6E-24 5.6E-29 207.4 17.5 162 90-253 1-265 (267)
33 PRK15480 glucose-1-phosphate t 99.9 4.2E-24 9.1E-29 209.0 18.3 165 87-253 1-241 (292)
34 cd06428 M1P_guanylylT_A_like_N 99.9 4.8E-24 1E-28 204.6 16.1 158 92-251 1-256 (257)
35 TIGR02623 G1P_cyt_trans glucos 99.9 8.7E-24 1.9E-28 202.9 17.8 162 91-258 1-250 (254)
36 cd02538 G1P_TT_short G1P_TT_sh 99.9 2E-23 4.4E-28 198.1 17.8 160 90-252 1-237 (240)
37 cd04189 G1P_TT_long G1P_TT_lon 99.9 3.5E-23 7.5E-28 195.5 18.7 164 90-254 1-235 (236)
38 TIGR01099 galU UTP-glucose-1-p 99.9 2.4E-23 5.2E-28 199.7 16.5 157 90-248 1-260 (260)
39 cd06422 NTP_transferase_like_1 99.9 9.6E-23 2.1E-27 190.8 15.0 151 91-248 1-221 (221)
40 TIGR01207 rmlA glucose-1-phosp 99.9 2.1E-22 4.6E-27 196.5 17.5 160 91-253 1-237 (286)
41 PRK13389 UTP--glucose-1-phosph 99.9 3.2E-22 7E-27 196.7 18.1 161 88-252 7-279 (302)
42 cd02524 G1P_cytidylyltransfera 99.9 3.3E-22 7.2E-27 191.5 17.5 159 92-256 1-249 (253)
43 cd06426 NTP_transferase_like_2 99.9 4.3E-22 9.3E-27 185.9 16.2 153 92-249 1-220 (220)
44 cd06915 NTP_transferase_WcbM_l 99.9 1.8E-21 3.8E-26 181.3 16.0 152 92-249 1-223 (223)
45 cd02508 ADP_Glucose_PP ADP-glu 99.9 1.4E-21 2.9E-26 180.7 12.4 147 92-239 1-200 (200)
46 cd02523 PC_cytidylyltransferas 99.9 7.2E-21 1.6E-25 179.1 14.4 156 92-249 1-229 (229)
47 cd04181 NTP_transferase NTP_tr 99.9 1.3E-20 2.8E-25 174.9 15.6 146 92-240 1-217 (217)
48 COG1210 GalU UDP-glucose pyrop 99.8 9.4E-21 2E-25 178.6 13.9 166 87-255 2-272 (291)
49 cd04183 GT2_BcE_like GT2_BcbE_ 99.8 3.3E-19 7.2E-24 167.9 15.3 153 92-245 1-230 (231)
50 COG1213 Predicted sugar nucleo 99.7 6E-17 1.3E-21 150.3 11.7 162 87-255 1-231 (239)
51 cd02509 GDP-M1P_Guanylyltransf 99.7 3E-17 6.6E-22 159.4 10.0 67 90-156 1-70 (274)
52 cd02540 GT2_GlmU_N_bac N-termi 99.7 1.7E-16 3.7E-21 148.8 14.8 149 92-244 1-228 (229)
53 PRK05450 3-deoxy-manno-octulos 99.7 2.9E-15 6.4E-20 142.3 16.1 152 89-252 2-244 (245)
54 TIGR01479 GMP_PMI mannose-1-ph 99.6 1.8E-15 3.9E-20 157.4 14.0 56 90-145 1-57 (468)
55 cd02517 CMP-KDO-Synthetase CMP 99.6 1.4E-14 3E-19 137.2 17.0 149 90-250 2-238 (239)
56 PRK13368 3-deoxy-manno-octulos 99.6 4E-14 8.8E-19 133.9 16.0 150 89-250 2-236 (238)
57 cd04197 eIF-2B_epsilon_N The N 99.6 3.3E-15 7.2E-20 139.9 7.4 67 90-157 1-67 (217)
58 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.6 7E-15 1.5E-19 139.2 9.6 148 211-389 29-192 (231)
59 cd05636 LbH_G1P_TT_C_like Puta 99.6 5.4E-14 1.2E-18 126.0 13.6 117 273-409 18-162 (163)
60 PRK15460 cpsB mannose-1-phosph 99.5 4.1E-14 8.8E-19 146.7 12.8 68 89-156 5-74 (478)
61 COG4750 LicC CTP:phosphocholin 99.5 9.4E-15 2E-19 130.9 6.2 68 90-159 1-68 (231)
62 cd04651 LbH_G1P_AT_C Glucose-1 99.5 1.8E-13 4E-18 113.7 12.4 103 278-403 1-104 (104)
63 COG1044 LpxD UDP-3-O-[3-hydrox 99.5 3.8E-13 8.2E-18 131.0 15.0 170 239-409 78-287 (338)
64 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.5 2.7E-13 5.8E-18 130.3 13.6 144 262-409 7-171 (254)
65 COG0836 {ManC} Mannose-1-phosp 99.5 2.8E-13 6E-18 131.0 13.4 67 89-155 1-70 (333)
66 TIGR01853 lipid_A_lpxD UDP-3-O 99.5 7.6E-13 1.7E-17 131.4 15.6 49 358-407 230-278 (324)
67 TIGR01852 lipid_A_lpxA acyl-[a 99.5 5.9E-13 1.3E-17 128.0 14.1 143 262-408 6-169 (254)
68 cd03353 LbH_GlmU_C N-acetyl-gl 99.5 7.2E-13 1.6E-17 121.9 13.8 122 284-409 46-177 (193)
69 PRK05289 UDP-N-acetylglucosami 99.5 5.6E-13 1.2E-17 128.7 12.9 121 288-409 32-174 (262)
70 PRK12461 UDP-N-acetylglucosami 99.4 1.9E-12 4.1E-17 124.4 13.8 118 288-408 29-169 (255)
71 PRK00892 lpxD UDP-3-O-[3-hydro 99.4 3.8E-12 8.2E-17 127.6 16.2 59 349-408 228-287 (343)
72 cd02507 eIF-2B_gamma_N_like Th 99.4 6E-13 1.3E-17 124.6 7.4 67 90-157 1-67 (216)
73 cd04198 eIF-2B_gamma_N The N-t 99.4 8E-13 1.7E-17 123.6 7.2 66 90-156 1-67 (214)
74 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.4 7.9E-12 1.7E-16 120.1 13.2 105 288-400 47-174 (254)
75 PLN02296 carbonate dehydratase 99.3 1.1E-11 2.4E-16 119.7 12.9 117 262-408 48-180 (269)
76 TIGR02287 PaaY phenylacetic ac 99.3 1.7E-11 3.7E-16 112.9 13.1 102 269-393 11-122 (192)
77 TIGR01852 lipid_A_lpxA acyl-[a 99.3 1.8E-11 3.8E-16 117.7 13.4 112 287-408 45-179 (254)
78 cd04745 LbH_paaY_like paaY-lik 99.3 2.6E-11 5.6E-16 107.9 13.3 97 287-403 17-123 (155)
79 cd04646 LbH_Dynactin_6 Dynacti 99.3 2E-11 4.2E-16 109.8 12.2 118 272-408 5-127 (164)
80 cd03353 LbH_GlmU_C N-acetyl-gl 99.3 2.2E-11 4.7E-16 112.0 12.5 138 264-409 13-171 (193)
81 cd03352 LbH_LpxD UDP-3-O-acyl- 99.3 5.3E-11 1.2E-15 110.3 13.4 118 288-408 37-182 (205)
82 PRK05289 UDP-N-acetylglucosami 99.3 3.5E-11 7.6E-16 116.2 12.2 30 364-393 142-171 (262)
83 TIGR01173 glmU UDP-N-acetylglu 99.3 2.6E-11 5.6E-16 125.2 11.6 143 263-408 270-432 (451)
84 TIGR03308 phn_thr-fam phosphon 99.2 3.5E-11 7.6E-16 112.0 10.6 52 283-334 14-66 (204)
85 COG1044 LpxD UDP-3-O-[3-hydrox 99.2 5.1E-11 1.1E-15 116.3 12.0 52 268-319 101-156 (338)
86 PLN02472 uncharacterized prote 99.2 1.3E-10 2.8E-15 110.9 13.4 113 266-408 59-187 (246)
87 cd05636 LbH_G1P_TT_C_like Puta 99.2 8.1E-11 1.8E-15 105.4 10.8 127 262-388 19-160 (163)
88 PRK11830 dapD 2,3,4,5-tetrahyd 99.2 7.8E-11 1.7E-15 113.6 11.3 41 358-399 177-217 (272)
89 PRK13627 carnitine operon prot 99.2 1.7E-10 3.7E-15 106.7 12.6 95 287-407 27-131 (196)
90 PRK00155 ispD 2-C-methyl-D-ery 99.2 2.2E-10 4.9E-15 107.8 13.6 161 87-253 1-223 (227)
91 TIGR01853 lipid_A_lpxD UDP-3-O 99.2 1.1E-10 2.4E-15 116.0 12.0 172 235-408 66-267 (324)
92 PRK00892 lpxD UDP-3-O-[3-hydro 99.2 1.5E-10 3.2E-15 116.1 12.7 171 236-408 74-275 (343)
93 cd03352 LbH_LpxD UDP-3-O-acyl- 99.2 2.1E-10 4.5E-15 106.4 12.8 142 264-409 5-165 (205)
94 cd04652 LbH_eIF2B_gamma_C eIF- 99.2 1.6E-10 3.4E-15 91.4 10.0 64 291-373 2-66 (81)
95 cd03356 LbH_G1P_AT_C_like Left 99.2 1.2E-10 2.6E-15 91.3 9.2 68 290-376 1-69 (79)
96 COG1043 LpxA Acyl-[acyl carrie 99.2 2.6E-10 5.7E-15 105.9 12.5 119 288-407 33-173 (260)
97 cd05787 LbH_eIF2B_epsilon eIF- 99.2 1.2E-10 2.6E-15 91.0 9.0 74 290-382 1-75 (79)
98 cd04650 LbH_FBP Ferripyochelin 99.2 4.9E-10 1.1E-14 99.7 13.9 96 287-402 17-122 (154)
99 PRK12461 UDP-N-acetylglucosami 99.2 1.2E-10 2.7E-15 111.9 10.8 47 347-393 78-131 (255)
100 cd00710 LbH_gamma_CA Gamma car 99.2 5E-10 1.1E-14 100.9 13.8 114 270-409 6-131 (167)
101 PRK09382 ispDF bifunctional 2- 99.2 3.4E-10 7.3E-15 114.6 13.9 160 86-254 2-214 (378)
102 COG1043 LpxA Acyl-[acyl carrie 99.2 1.7E-10 3.7E-15 107.2 10.2 136 267-409 4-151 (260)
103 PRK14356 glmU bifunctional N-a 99.2 2.1E-10 4.6E-15 118.9 12.1 121 275-395 290-430 (456)
104 cd04645 LbH_gamma_CA_like Gamm 99.2 8.1E-10 1.8E-14 98.0 14.1 97 287-403 16-122 (153)
105 PLN02917 CMP-KDO synthetase 99.2 9.8E-10 2.1E-14 107.8 16.1 155 89-255 47-290 (293)
106 COG2266 GTP:adenosylcobinamide 99.1 4.5E-10 9.8E-15 100.1 11.8 147 90-254 1-169 (177)
107 cd04652 LbH_eIF2B_gamma_C eIF- 99.1 3.2E-10 7E-15 89.6 9.5 73 279-370 6-80 (81)
108 TIGR03308 phn_thr-fam phosphon 99.1 3.7E-10 7.9E-15 105.1 11.3 59 262-321 10-70 (204)
109 TIGR00965 dapD 2,3,4,5-tetrahy 99.1 4.9E-10 1.1E-14 107.3 12.0 16 305-320 142-157 (269)
110 cd04745 LbH_paaY_like paaY-lik 99.1 5.8E-10 1.3E-14 99.2 11.7 95 292-407 4-109 (155)
111 TIGR00453 ispD 2-C-methyl-D-er 99.1 7.5E-10 1.6E-14 103.3 12.8 153 92-250 2-215 (217)
112 cd03360 LbH_AT_putative Putati 99.1 2.2E-10 4.8E-15 103.6 8.9 57 349-408 135-192 (197)
113 COG0663 PaaY Carbonic anhydras 99.1 1E-09 2.3E-14 98.3 12.8 112 266-407 11-132 (176)
114 cd05824 LbH_M1P_guanylylT_C Ma 99.1 3.5E-10 7.7E-15 89.2 8.6 71 291-380 2-74 (80)
115 PRK14357 glmU bifunctional N-a 99.1 7.8E-10 1.7E-14 114.4 13.5 99 287-393 305-413 (448)
116 TIGR00454 conserved hypothetic 99.1 1.6E-10 3.4E-15 105.8 7.2 62 90-156 1-62 (183)
117 PRK14358 glmU bifunctional N-a 99.1 3.9E-10 8.5E-15 118.0 10.9 83 287-372 269-355 (481)
118 TIGR00965 dapD 2,3,4,5-tetrahy 99.1 5.7E-10 1.2E-14 106.9 11.0 33 289-321 113-146 (269)
119 KOG1461 Translation initiation 99.1 1.6E-10 3.5E-15 119.6 7.6 93 267-378 328-423 (673)
120 cd02516 CDP-ME_synthetase CDP- 99.1 1E-09 2.2E-14 102.2 12.4 151 91-247 2-217 (218)
121 PRK14353 glmU bifunctional N-a 99.1 7.5E-10 1.6E-14 114.5 12.4 124 267-399 281-415 (446)
122 PRK14355 glmU bifunctional N-a 99.1 7.3E-10 1.6E-14 115.2 11.4 75 288-381 268-344 (459)
123 PRK14352 glmU bifunctional N-a 99.1 8.1E-10 1.7E-14 115.6 11.7 99 286-393 320-429 (482)
124 PLN02296 carbonate dehydratase 99.1 1.1E-09 2.4E-14 105.9 11.7 99 290-409 54-169 (269)
125 PRK09451 glmU bifunctional N-a 99.1 7E-10 1.5E-14 115.2 11.0 82 288-372 265-350 (456)
126 cd03350 LbH_THP_succinylT 2,3, 99.1 1.6E-09 3.5E-14 94.6 11.4 41 347-387 76-117 (139)
127 PRK13627 carnitine operon prot 99.1 9.6E-10 2.1E-14 101.7 10.4 98 291-409 13-121 (196)
128 PLN02728 2-C-methyl-D-erythrit 99.0 4.2E-09 9.2E-14 101.1 15.0 62 82-147 17-79 (252)
129 TIGR03310 matur_ygfJ molybdenu 99.0 1.8E-09 4E-14 98.0 11.8 56 92-153 2-57 (188)
130 TIGR02287 PaaY phenylacetic ac 99.0 1.5E-09 3.2E-14 100.1 10.9 97 291-407 11-129 (192)
131 TIGR03570 NeuD_NnaD sugar O-ac 99.0 4.1E-09 8.8E-14 96.4 13.8 132 233-408 60-195 (201)
132 cd04646 LbH_Dynactin_6 Dynacti 99.0 1.4E-09 3.1E-14 97.8 10.3 31 377-408 85-115 (164)
133 cd04645 LbH_gamma_CA_like Gamm 99.0 1.7E-09 3.6E-14 96.0 10.6 96 291-407 2-108 (153)
134 cd03359 LbH_Dynactin_5 Dynacti 99.0 3.1E-09 6.7E-14 95.2 12.3 108 289-403 22-134 (161)
135 cd03358 LbH_WxcM_N_like WcxM-l 99.0 1.6E-09 3.5E-14 91.3 9.7 83 288-390 16-100 (119)
136 PRK00317 mobA molybdopterin-gu 99.0 3.2E-09 6.9E-14 97.4 12.1 56 87-148 1-56 (193)
137 PRK14354 glmU bifunctional N-a 99.0 2.1E-09 4.5E-14 111.5 11.8 120 278-408 306-435 (458)
138 PRK11830 dapD 2,3,4,5-tetrahyd 99.0 5.6E-09 1.2E-13 100.8 13.2 41 346-386 176-217 (272)
139 PRK13385 2-C-methyl-D-erythrit 99.0 6.2E-09 1.4E-13 98.3 13.3 160 89-253 2-224 (230)
140 cd03356 LbH_G1P_AT_C_like Left 99.0 2.8E-09 6.1E-14 83.5 9.1 67 283-368 11-79 (79)
141 cd04651 LbH_G1P_AT_C Glucose-1 99.0 2.1E-09 4.6E-14 89.2 8.8 78 295-393 2-80 (104)
142 PRK14360 glmU bifunctional N-a 99.0 1.7E-09 3.7E-14 111.9 10.1 115 283-408 308-432 (450)
143 PRK00560 molybdopterin-guanine 99.0 3.3E-09 7.1E-14 98.0 10.5 55 85-145 4-58 (196)
144 COG2068 Uncharacterized MobA-r 99.0 8.8E-09 1.9E-13 94.2 13.0 154 87-253 3-198 (199)
145 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.0 2.3E-09 5E-14 101.6 9.5 32 348-379 162-194 (231)
146 cd04650 LbH_FBP Ferripyochelin 99.0 5.3E-09 1.1E-13 93.1 11.0 37 292-328 4-46 (154)
147 COG1207 GlmU N-acetylglucosami 99.0 2.8E-09 6E-14 106.6 10.1 83 289-374 269-355 (460)
148 PRK14359 glmU bifunctional N-a 99.0 4.6E-09 9.9E-14 108.0 11.9 106 284-407 294-408 (430)
149 cd03350 LbH_THP_succinylT 2,3, 98.9 8.3E-09 1.8E-13 90.1 10.7 36 358-393 76-111 (139)
150 TIGR00466 kdsB 3-deoxy-D-manno 98.9 2.2E-08 4.7E-13 95.4 14.4 47 92-145 2-48 (238)
151 PLN02472 uncharacterized prote 98.9 7.8E-09 1.7E-13 98.7 11.3 98 292-409 63-176 (246)
152 cd05787 LbH_eIF2B_epsilon eIF- 98.9 5E-09 1.1E-13 81.8 8.3 79 306-405 1-79 (79)
153 cd00710 LbH_gamma_CA Gamma car 98.9 1.1E-08 2.4E-13 92.2 11.5 31 290-320 4-36 (167)
154 cd03360 LbH_AT_putative Putati 98.9 9.5E-09 2E-13 92.9 11.0 46 348-393 140-186 (197)
155 KOG1462 Translation initiation 98.9 2.7E-09 5.9E-14 105.2 7.8 88 269-375 331-420 (433)
156 cd03358 LbH_WxcM_N_like WcxM-l 98.9 6.2E-09 1.3E-13 87.7 8.7 95 292-408 2-109 (119)
157 cd05824 LbH_M1P_guanylylT_C Ma 98.9 1.6E-08 3.4E-13 79.7 9.1 73 277-368 4-80 (80)
158 TIGR03570 NeuD_NnaD sugar O-ac 98.8 1.2E-08 2.6E-13 93.3 9.4 60 349-409 126-186 (201)
159 cd02503 MobA MobA catalyzes th 98.8 3.5E-08 7.5E-13 89.3 11.8 53 90-149 1-53 (181)
160 COG0663 PaaY Carbonic anhydras 98.8 3.7E-08 8E-13 88.4 10.1 99 291-409 14-122 (176)
161 cd04182 GT_2_like_f GT_2_like_ 98.8 1.3E-08 2.8E-13 91.8 6.6 58 90-153 1-58 (186)
162 PF12804 NTP_transf_3: MobA-li 98.8 7.4E-09 1.6E-13 91.7 4.8 48 92-145 1-48 (160)
163 cd05635 LbH_unknown Uncharacte 98.7 6.8E-08 1.5E-12 79.9 9.1 66 288-374 29-96 (101)
164 PLN02694 serine O-acetyltransf 98.7 7E-08 1.5E-12 93.5 9.9 39 289-327 161-203 (294)
165 cd04649 LbH_THP_succinylT_puta 98.7 8.9E-08 1.9E-12 83.7 9.6 9 291-299 16-24 (147)
166 PRK02726 molybdopterin-guanine 98.7 2.1E-07 4.6E-12 86.2 12.2 51 88-145 6-56 (200)
167 cd02518 GT2_SpsF SpsF is a gly 98.7 5.9E-07 1.3E-11 84.8 14.8 57 92-155 2-61 (233)
168 cd04649 LbH_THP_succinylT_puta 98.7 1.3E-07 2.9E-12 82.6 9.5 28 349-377 82-109 (147)
169 cd04647 LbH_MAT_like Maltose O 98.7 1.2E-07 2.6E-12 78.4 8.8 34 289-322 2-39 (109)
170 cd02513 CMP-NeuAc_Synthase CMP 98.7 7.3E-07 1.6E-11 83.1 15.1 48 90-144 2-50 (223)
171 PRK14489 putative bifunctional 98.6 2.5E-07 5.5E-12 93.6 12.2 62 86-153 2-63 (366)
172 COG2171 DapD Tetrahydrodipicol 98.6 1.4E-07 3E-12 89.5 9.3 48 271-322 107-156 (271)
173 PRK05293 glgC glucose-1-phosph 98.6 1.2E-07 2.5E-12 96.2 9.1 69 285-372 305-379 (380)
174 COG1211 IspD 4-diphosphocytidy 98.6 3.4E-07 7.3E-12 86.3 11.0 64 87-154 2-67 (230)
175 cd05635 LbH_unknown Uncharacte 98.6 3.4E-07 7.4E-12 75.7 9.8 66 286-372 9-77 (101)
176 cd03359 LbH_Dynactin_5 Dynacti 98.6 3.6E-07 7.9E-12 81.8 10.2 40 349-388 92-132 (161)
177 PRK02862 glgC glucose-1-phosph 98.6 2.1E-07 4.5E-12 96.2 9.6 27 300-327 304-330 (429)
178 TIGR01172 cysE serine O-acetyl 98.6 3.9E-07 8.5E-12 81.8 10.1 65 305-390 82-146 (162)
179 cd00208 LbetaH Left-handed par 98.6 2.8E-07 6.1E-12 71.0 7.7 71 289-375 1-74 (78)
180 TIGR01208 rmlA_long glucose-1- 98.5 3.2E-07 7E-12 92.1 9.5 41 289-330 272-313 (353)
181 TIGR02092 glgD glucose-1-phosp 98.5 4.1E-07 8.9E-12 91.9 9.8 52 275-327 292-344 (369)
182 TIGR03536 DapD_gpp 2,3,4,5-tet 98.5 4.8E-07 1E-11 88.1 9.4 44 109-154 21-64 (341)
183 KOG3121 Dynactin, subunit p25 98.5 1.2E-07 2.6E-12 81.5 4.6 107 287-407 38-144 (184)
184 TIGR03536 DapD_gpp 2,3,4,5-tet 98.5 8.3E-07 1.8E-11 86.4 11.0 15 236-250 134-150 (341)
185 PRK10502 putative acyl transfe 98.5 5.7E-07 1.2E-11 82.2 8.9 33 289-321 52-88 (182)
186 PRK11132 cysE serine acetyltra 98.5 6.9E-07 1.5E-11 86.4 9.9 35 289-326 148-183 (273)
187 PRK10502 putative acyl transfe 98.5 1E-06 2.2E-11 80.5 10.4 83 288-379 71-158 (182)
188 PRK10092 maltose O-acetyltrans 98.5 7.4E-07 1.6E-11 81.6 9.4 100 272-380 59-164 (183)
189 cd03357 LbH_MAT_GAT Maltose O- 98.5 8.6E-07 1.9E-11 80.0 9.7 34 288-321 62-99 (169)
190 PLN02357 serine acetyltransfer 98.5 6.6E-07 1.4E-11 89.1 9.6 38 290-327 228-269 (360)
191 PRK09527 lacA galactoside O-ac 98.5 8.7E-07 1.9E-11 82.4 9.7 101 270-380 59-166 (203)
192 PLN02241 glucose-1-phosphate a 98.5 8.2E-07 1.8E-11 91.9 10.6 117 274-403 317-436 (436)
193 COG1208 GCD1 Nucleoside-diphos 98.5 5.7E-07 1.2E-11 90.8 8.9 87 277-388 266-355 (358)
194 TIGR03535 DapD_actino 2,3,4,5- 98.4 1.5E-06 3.2E-11 84.3 11.2 14 236-249 110-125 (319)
195 TIGR03202 pucB xanthine dehydr 98.4 3E-07 6.5E-12 84.1 5.9 52 91-148 2-53 (190)
196 PRK09677 putative lipopolysacc 98.4 2E-06 4.4E-11 79.3 11.0 35 288-322 65-103 (192)
197 cd03354 LbH_SAT Serine acetylt 98.4 2E-06 4.4E-11 70.6 9.9 74 290-387 4-84 (101)
198 TIGR02091 glgC glucose-1-phosp 98.4 7.9E-07 1.7E-11 89.5 8.8 52 275-326 297-349 (361)
199 PF01128 IspD: 2-C-methyl-D-er 98.4 5.3E-07 1.1E-11 84.9 7.1 63 90-156 1-65 (221)
200 PRK14490 putative bifunctional 98.4 3.5E-06 7.5E-11 85.4 13.2 53 87-146 172-224 (369)
201 cd03357 LbH_MAT_GAT Maltose O- 98.4 3.4E-06 7.3E-11 76.1 11.5 13 291-303 59-72 (169)
202 TIGR02665 molyb_mobA molybdopt 98.4 5.4E-07 1.2E-11 81.8 6.1 52 90-147 1-52 (186)
203 COG0448 GlgC ADP-glucose pyrop 98.4 1.7E-06 3.6E-11 86.7 9.9 52 275-327 299-351 (393)
204 PRK00844 glgC glucose-1-phosph 98.3 2.4E-06 5.1E-11 87.7 10.2 66 273-357 316-382 (407)
205 PRK00725 glgC glucose-1-phosph 98.3 1.8E-06 3.8E-11 89.2 9.1 72 301-393 324-395 (425)
206 cd04180 UGPase_euk_like Eukary 98.3 1.2E-06 2.5E-11 85.0 7.0 62 91-156 2-74 (266)
207 PRK09677 putative lipopolysacc 98.3 4.3E-06 9.2E-11 77.1 10.2 54 274-330 31-94 (192)
208 COG2171 DapD Tetrahydrodipicol 98.3 3.8E-06 8.2E-11 79.8 9.9 99 267-381 115-218 (271)
209 TIGR01172 cysE serine O-acetyl 98.3 3.5E-06 7.6E-11 75.6 9.2 76 289-374 68-148 (162)
210 cd05825 LbH_wcaF_like wcaF-lik 98.3 1.1E-05 2.3E-10 67.2 11.0 33 289-321 4-40 (107)
211 KOG4042 Dynactin subunit p27/W 98.3 1.6E-06 3.4E-11 75.2 5.6 49 273-321 9-64 (190)
212 PRK11132 cysE serine acetyltra 98.2 2.9E-06 6.3E-11 82.1 8.1 8 312-319 163-170 (273)
213 cd03354 LbH_SAT Serine acetylt 98.2 6.7E-06 1.4E-10 67.5 8.5 29 365-393 56-84 (101)
214 cd00208 LbetaH Left-handed par 98.2 7.5E-06 1.6E-10 63.0 8.3 16 306-321 2-17 (78)
215 TIGR03535 DapD_actino 2,3,4,5- 98.2 1E-05 2.2E-10 78.5 10.8 9 135-143 56-64 (319)
216 PRK09527 lacA galactoside O-ac 98.2 5.7E-06 1.2E-10 76.9 8.8 97 290-408 57-173 (203)
217 PLN02694 serine O-acetyltransf 98.2 4.3E-06 9.3E-11 81.2 8.1 34 289-322 167-204 (294)
218 PRK10092 maltose O-acetyltrans 98.2 1.1E-05 2.3E-10 73.9 10.3 45 361-408 127-171 (183)
219 PRK10191 putative acyl transfe 98.2 1.3E-05 2.8E-10 70.8 9.8 32 348-379 94-126 (146)
220 PLN02739 serine acetyltransfer 98.2 6.5E-06 1.4E-10 81.6 8.8 32 290-324 213-245 (355)
221 cd04193 UDPGlcNAc_PPase UDPGlc 98.2 3.9E-06 8.5E-11 83.5 6.9 66 88-156 14-93 (323)
222 PRK10191 putative acyl transfe 98.1 9.3E-06 2E-10 71.6 8.3 33 358-390 93-125 (146)
223 cd05825 LbH_wcaF_like wcaF-lik 98.1 1.2E-05 2.7E-10 66.8 8.5 27 348-374 58-85 (107)
224 COG1212 KdsB CMP-2-keto-3-deox 98.1 3.9E-05 8.4E-10 71.4 11.7 155 89-254 3-244 (247)
225 COG1045 CysE Serine acetyltran 98.1 1.6E-05 3.4E-10 72.5 8.6 77 290-373 75-153 (194)
226 PLN02357 serine acetyltransfer 98.1 1.4E-05 3E-10 79.8 8.8 33 358-390 279-311 (360)
227 cd03349 LbH_XAT Xenobiotic acy 98.1 2.2E-05 4.8E-10 69.2 9.0 33 290-322 3-39 (145)
228 PTZ00339 UDP-N-acetylglucosami 98.0 8.9E-06 1.9E-10 84.7 7.4 65 88-156 105-186 (482)
229 PLN02739 serine acetyltransfer 98.0 1E-05 2.2E-10 80.2 7.4 30 364-393 258-287 (355)
230 COG0746 MobA Molybdopterin-gua 98.0 7.2E-06 1.6E-10 75.6 5.5 52 87-146 2-53 (192)
231 cd04647 LbH_MAT_like Maltose O 97.9 5.4E-05 1.2E-09 62.4 8.6 11 289-299 22-32 (109)
232 KOG1322 GDP-mannose pyrophosph 97.8 2.5E-05 5.3E-10 76.3 5.6 91 287-394 263-353 (371)
233 TIGR02353 NRPS_term_dom non-ri 97.7 7.2E-05 1.6E-09 81.8 8.1 29 379-408 661-689 (695)
234 COG1045 CysE Serine acetyltran 97.7 0.00014 3E-09 66.4 8.0 35 358-392 120-154 (194)
235 PRK14500 putative bifunctional 97.7 4.9E-05 1.1E-09 76.4 5.5 50 89-145 160-209 (346)
236 TIGR02353 NRPS_term_dom non-ri 97.6 0.00024 5.1E-09 77.8 9.3 81 288-381 597-681 (695)
237 COG0110 WbbJ Acetyltransferase 97.5 0.00023 5E-09 64.8 7.3 35 288-322 67-105 (190)
238 KOG1460 GDP-mannose pyrophosph 97.4 0.0003 6.5E-09 67.9 6.6 38 289-326 307-345 (407)
239 KOG4750 Serine O-acetyltransfe 97.4 0.00031 6.6E-09 65.2 6.0 34 290-326 156-190 (269)
240 COG0110 WbbJ Acetyltransferase 97.3 0.0015 3.3E-08 59.4 10.0 29 293-321 66-98 (190)
241 cd03349 LbH_XAT Xenobiotic acy 97.3 0.0022 4.7E-08 56.5 10.2 28 289-316 8-39 (145)
242 PLN02474 UTP--glucose-1-phosph 97.2 0.019 4.2E-07 59.7 17.9 68 86-156 76-149 (469)
243 KOG3121 Dynactin, subunit p25 97.2 0.00047 1E-08 59.6 4.6 86 287-391 53-147 (184)
244 PF00132 Hexapep: Bacterial tr 97.2 0.00033 7.3E-09 46.2 3.0 32 289-320 2-35 (36)
245 COG4801 Predicted acyltransfer 97.2 0.0023 4.9E-08 59.8 9.2 40 289-328 34-74 (277)
246 COG4801 Predicted acyltransfer 97.1 0.0013 2.9E-08 61.3 7.3 82 288-393 22-110 (277)
247 COG1861 SpsF Spore coat polysa 97.1 0.021 4.5E-07 53.4 14.3 150 91-250 4-202 (241)
248 TIGR03584 PseF pseudaminic aci 97.0 0.0012 2.6E-08 62.3 6.2 47 92-145 2-49 (222)
249 KOG4750 Serine O-acetyltransfe 96.9 0.0022 4.8E-08 59.6 6.8 77 311-409 149-233 (269)
250 PRK13412 fkp bifunctional fuco 96.9 0.035 7.5E-07 62.5 16.6 129 184-323 227-373 (974)
251 PF14602 Hexapep_2: Hexapeptid 96.8 0.0015 3.2E-08 43.0 3.1 31 289-320 2-33 (34)
252 cd00897 UGPase_euk Eukaryotic 96.5 0.0071 1.5E-07 59.6 6.9 66 88-156 2-73 (300)
253 KOG4042 Dynactin subunit p27/W 96.3 0.012 2.7E-07 51.4 6.6 118 289-408 9-139 (190)
254 PF02348 CTP_transf_3: Cytidyl 96.1 0.0093 2E-07 55.3 5.5 48 92-146 2-50 (217)
255 COG1083 NeuA CMP-N-acetylneura 96.1 0.07 1.5E-06 49.7 10.9 49 87-142 1-50 (228)
256 PF00132 Hexapep: Bacterial tr 96.0 0.0068 1.5E-07 39.8 2.9 13 360-372 4-16 (36)
257 cd06424 UGGPase UGGPase cataly 95.7 0.019 4E-07 57.0 5.6 63 91-156 2-76 (315)
258 PF01704 UDPGP: UTP--glucose-1 95.6 0.024 5.3E-07 58.5 6.3 68 86-156 53-126 (420)
259 PF14602 Hexapep_2: Hexapeptid 95.6 0.012 2.6E-07 38.6 2.7 12 360-371 4-15 (34)
260 PLN02830 UDP-sugar pyrophospho 94.7 0.077 1.7E-06 57.2 7.2 67 87-156 126-207 (615)
261 COG4284 UDP-glucose pyrophosph 94.5 0.094 2E-06 54.2 6.9 67 87-156 103-174 (472)
262 PF07959 Fucokinase: L-fucokin 93.2 0.39 8.4E-06 49.6 8.8 19 185-203 140-158 (414)
263 PLN02435 probable UDP-N-acetyl 92.7 0.26 5.7E-06 51.8 6.6 66 88-156 115-198 (493)
264 PF07959 Fucokinase: L-fucokin 92.5 0.44 9.6E-06 49.2 8.1 47 296-361 275-322 (414)
265 PRK00576 molybdopterin-guanine 85.8 0.98 2.1E-05 40.6 4.0 36 110-146 3-39 (178)
266 KOG2638 UDP-glucose pyrophosph 75.7 72 0.0016 33.0 13.3 67 87-156 101-173 (498)
267 KOG2388 UDP-N-acetylglucosamin 68.1 5.7 0.00012 41.3 3.8 66 88-156 96-175 (477)
268 PRK13412 fkp bifunctional fuco 62.0 13 0.00029 42.4 5.5 54 300-372 332-387 (974)
269 PF04519 Bactofilin: Polymer-f 46.7 51 0.0011 26.5 5.4 20 347-366 37-56 (101)
270 cd00761 Glyco_tranf_GTA_type G 44.5 39 0.00085 27.3 4.5 43 114-156 2-46 (156)
271 COG1664 CcmA Integral membrane 37.7 1.1E+02 0.0024 26.9 6.3 28 347-374 91-118 (146)
272 PRK00923 sirohydrochlorin coba 37.3 51 0.0011 27.7 4.1 21 122-142 46-66 (126)
273 TIGR03584 PseF pseudaminic aci 34.5 1E+02 0.0022 28.8 6.0 50 184-251 169-219 (222)
274 COG1920 Predicted nucleotidylt 29.1 82 0.0018 29.2 4.1 34 217-250 149-182 (210)
275 PRK05782 bifunctional sirohydr 25.2 1.1E+02 0.0023 30.9 4.6 56 86-144 2-72 (335)
276 PF05060 MGAT2: N-acetylglucos 24.4 1.2E+02 0.0026 30.7 4.8 56 101-156 23-81 (356)
277 TIGR03552 F420_cofC 2-phospho- 23.1 99 0.0021 27.7 3.7 41 100-145 13-54 (195)
278 PRK00576 molybdopterin-guanine 21.2 1.1E+02 0.0023 27.1 3.5 54 191-250 120-175 (178)
No 1
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-55 Score=430.74 Aligned_cols=297 Identities=41% Similarity=0.738 Sum_probs=264.9
Q ss_pred ccCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHHH------
Q 015296 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYA------ 159 (409)
Q Consensus 86 ~~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~~------ 159 (409)
+++++.|+|||||.|+||.|||+.||||.+|+||+|+|||++|+||.++||.+|+|+|+|++.++.+||+.+|.
T Consensus 2 ~~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~~ 81 (393)
T COG0448 2 MKKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDRK 81 (393)
T ss_pred CccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCccccccc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred ----------------------------------------------------------HHHHHcCCCeEEEEe-------
Q 015296 160 ----------------------------------------------------------KQLKAMKVDTTILGL------- 174 (409)
Q Consensus 160 ----------------------------------------------------------e~~~~~~~d~til~~------- 174 (409)
++|...++|.|+...
T Consensus 82 ~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~ea 161 (393)
T COG0448 82 NGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEA 161 (393)
T ss_pred cCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChHhh
Confidence 567777888887653
Q ss_pred --------cCC----cccCCC-------cEEEEEEEEEeHHHHHHHHhhcCC---CCCcchhchHHHHHhCCCeEEEEEe
Q 015296 175 --------DDE----RAKEMP-------YIASMGIYVISKDVMLNLLRDKFP---GANDFGSEVIPGATSIGMRVQAYLY 232 (409)
Q Consensus 175 --------~~~----~~~ekp-------~~~~~Giyif~~~vl~~ll~~~~~---~~~d~~~dli~~ll~~g~~V~a~~~ 232 (409)
+++ +|.||| .+++||+|+|+++.|.++|.+... +..||++++||.+++.|. ++||+|
T Consensus 162 s~fGim~~D~~~~i~~F~eKp~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~DfgkdiIp~~~~~~~-v~AY~f 240 (393)
T COG0448 162 SRFGVMNVDENGRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDFGKDIIPKLLERGK-VYAYEF 240 (393)
T ss_pred hhcCceEECCCCCEEeeeeccCcCCcccceeeeeeEEEcHHHHHHHHHHHhcccCccccchHHHHHHHHhcCC-EEEEec
Confidence 222 345555 269999999999999999886542 457899999999999775 999999
Q ss_pred cCeEEEcCCHHHHHHHHHhhccCCCCCCcccCCCCCccCCCcccCCceEe-cceEEEEEECCCcEEcceEEeceEECCCC
Q 015296 233 DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRS 311 (409)
Q Consensus 233 ~gyw~DIgt~edy~~an~~ll~~~~~~~~~~~~~~~i~~~~~~~~p~~i~-~~~i~~~~Ig~g~~I~~~~I~~svIg~~~ 311 (409)
+|||.||||+++||+||+++++ +.|.+.+|+++.+||+....+||+++. ++++.+|.|++||+|.+ +|+||+|+.++
T Consensus 241 ~gYw~dVgTi~syy~aNmdLl~-~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~nSLv~~GciI~G-~V~nSVL~~~v 318 (393)
T COG0448 241 SGYWRDVGTIDSYYEANMDLLS-PQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSNSLVAGGCIISG-TVENSVLFRGV 318 (393)
T ss_pred cchhhhcccHHHHHHhhHHhcC-CCCcccccCCCCceeecCCCCCCceEecCceEeeeeeeCCeEEEe-EEEeeEEecCe
Confidence 9999999999999999999999 446788999999999999999999999 78889999999999999 99999999999
Q ss_pred EECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEEeCCCccCCceeecCCeEEe
Q 015296 312 CISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIK 391 (409)
Q Consensus 312 ~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~ 391 (409)
+|+.+|.|++|+||++ +.||+||+|++||||+||.|++|+.|.+.. ++.++.. +.+.
T Consensus 319 ~I~~gs~i~~svim~~-------------------~~IG~~~~l~~aIIDk~v~I~~g~~i~~~~--~~~d~~~-~~~~- 375 (393)
T COG0448 319 RIGKGSVIENSVIMPD-------------------VEIGEGAVLRRAIIDKNVVIGEGVVIGGDK--PEEDRKR-FRSE- 375 (393)
T ss_pred EECCCCEEEeeEEeCC-------------------cEECCCCEEEEEEeCCCcEeCCCcEEcCCc--chhcccc-cccc-
Confidence 9999999999999998 579999999999999999999999998876 5555655 5666
Q ss_pred CCeEEEcCCcEeCCCcc
Q 015296 392 SGIVTIIKDALIPSGTI 408 (409)
Q Consensus 392 ~g~v~i~~~~~Ip~gtv 408 (409)
+|+++|+++.+++.+..
T Consensus 376 ~~ivVv~k~~~~~~~~~ 392 (393)
T COG0448 376 EGIVVVPKGMVIKLDIM 392 (393)
T ss_pred CCcEEEecccEeccccc
Confidence 99899999999987654
No 2
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=7.7e-55 Score=414.85 Aligned_cols=290 Identities=42% Similarity=0.661 Sum_probs=252.5
Q ss_pred CCccccCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHHH--
Q 015296 82 LDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYA-- 159 (409)
Q Consensus 82 ~~~~~~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~~-- 159 (409)
..|.+ ++|+|+||.||.||||+|||+++||||+|++ |||||+|++++|+++|+++|+++++|++++++.|+.+.|.
T Consensus 3 ~~~~~-~~vkaiILvGG~GTRLrPLT~t~pKPlVpfg-n~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y~~~ 80 (371)
T KOG1322|consen 3 TRPAD-QSVKAIILVGGYGTRLRPLTLTRPKPLVPFG-NKPMILHQIEALINSGITKIVLATQYNSESLNRHLSKAYGKE 80 (371)
T ss_pred ccccc-cceeEEEEecCCCceeeceeccCCCcccccC-cchhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHhhhc
Confidence 34555 8899999999999999999999999999999 7999999999999999999999999999999999988776
Q ss_pred ----------------------------------------------------HHHHHcCCCeEEEEe-------------
Q 015296 160 ----------------------------------------------------KQLKAMKVDTTILGL------------- 174 (409)
Q Consensus 160 ----------------------------------------------------e~~~~~~~d~til~~------------- 174 (409)
++|++.++|.||+..
T Consensus 81 lgVei~~s~eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vdepSkyGvv~~ 160 (371)
T KOG1322|consen 81 LGVEILASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVDEPSKYGVVVI 160 (371)
T ss_pred cceEEEEEeccCCCcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEeccCccccceEEE
Confidence 677777888887653
Q ss_pred cC-----CcccCCC-----cEEEEEEEEEeHHHHHHHHhhcCCCCCcchhchHHHHHhCCCeEEEEEecCeEEEcCCHHH
Q 015296 175 DD-----ERAKEMP-----YIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEA 244 (409)
Q Consensus 175 ~~-----~~~~ekp-----~~~~~Giyif~~~vl~~ll~~~~~~~~d~~~dli~~ll~~g~~V~a~~~~gyw~DIgt~ed 244 (409)
++ .+|.||| ...++|+|+|++++|++++ .+| .+|++|+||.+.+ ++++++|.++|||+|||+|+|
T Consensus 161 d~~~grV~~F~EKPkd~vsnkinaGiYi~~~~vL~ri~--~~p--tSiekEifP~~a~-~~~l~a~~l~gfWmDIGqpkd 235 (371)
T KOG1322|consen 161 DEDTGRVIRFVEKPKDLVSNKINAGIYILNPEVLDRIL--LRP--TSIEKEIFPAMAE-EHQLYAFDLPGFWMDIGQPKD 235 (371)
T ss_pred ecCCCceeEehhCchhhhhccccceEEEECHHHHhHhh--hcc--cchhhhhhhhhhh-cCceEEEecCchhhhcCCHHH
Confidence 23 1477888 4678999999999999887 444 3489999997776 789999999999999999999
Q ss_pred HHHHHHhhccCCCCCCcccCCCCCccCCCcccCCceEecceEEEEE--ECCCcEEcceEEeceEECCCCEECCCCEEece
Q 015296 245 FYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSV--IGEGCVIKNCKIHHSVVGLRSCISEGAIIEDT 322 (409)
Q Consensus 245 y~~an~~ll~~~~~~~~~~~~~~~i~~~~~~~~p~~i~~~~i~~~~--Ig~g~~I~~~~I~~svIg~~~~Ig~~~~I~~s 322 (409)
|+.+ +.||+.+.+.+++++++||+.+.++.+.|++ +|++|.|++ |++||++|+|++|+.|++|
T Consensus 236 f~~g-----------~~~Yl~s~~~~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~----~vvIG~r~~i~~gV~l~~s 300 (371)
T KOG1322|consen 236 FLTG-----------FSFYLRSLPKYTSPRLLPGSKIVGNVLVDSIASIGENCSIGP----NVVIGPRVRIEDGVRLQDS 300 (371)
T ss_pred HHHH-----------HHHHHhhCcccCCccccCCccccccEeeccccccCCccEECC----CceECCCcEecCceEEEee
Confidence 9999 4567777788999999999999988877744 455555554 7999999999999999999
Q ss_pred EEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcE
Q 015296 323 LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDAL 402 (409)
Q Consensus 323 ~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~ 402 (409)
.++++++|++++...+++.++++||++|+ +|++|++||+|+.|.+...+.++ +++.++++++.|.++++
T Consensus 301 ~il~~~~~~~~s~i~s~ivg~~~~IG~~~-------~id~~a~lG~nV~V~d~~~vn~g----~~l~~ks~~~~v~~~~i 369 (371)
T KOG1322|consen 301 TILGADYYETHSEISSSIVGWNVPIGIWA-------RIDKNAVLGKNVIVADEDYVNEG----SGLPIKSGITVVLKPAI 369 (371)
T ss_pred EEEccceechhHHHHhhhccccccccCce-------EEecccEeccceEEecccccccc----eeEEeccceeecccccc
Confidence 99999999999999998888886666664 89999999999999999988887 77999999999999888
Q ss_pred eC
Q 015296 403 IP 404 (409)
Q Consensus 403 Ip 404 (409)
|+
T Consensus 370 I~ 371 (371)
T KOG1322|consen 370 IM 371 (371)
T ss_pred cC
Confidence 74
No 3
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=2.7e-50 Score=414.51 Aligned_cols=322 Identities=68% Similarity=1.128 Sum_probs=275.5
Q ss_pred cCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHHH-------
Q 015296 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYA------- 159 (409)
Q Consensus 87 ~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~~------- 159 (409)
|++|+|||||||+||||+|||+.+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++++||.+.|.
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~ 80 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNF 80 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCccc
Confidence 6789999999999999999999999999999987899999999999999999999999999999998865320
Q ss_pred --------------------------------------------------------------HHHHHcCCCeEEEE----
Q 015296 160 --------------------------------------------------------------KQLKAMKVDTTILG---- 173 (409)
Q Consensus 160 --------------------------------------------------------------e~~~~~~~d~til~---- 173 (409)
++|++.+++.|++.
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v~ 160 (436)
T PLN02241 81 GDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVD 160 (436)
T ss_pred CCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEecc
Confidence 11111122333322
Q ss_pred -----------ecCC----cccCCC--------------------------cEEEEEEEEEeHHHHHHHHhhcCCCCCcc
Q 015296 174 -----------LDDE----RAKEMP--------------------------YIASMGIYVISKDVMLNLLRDKFPGANDF 212 (409)
Q Consensus 174 -----------~~~~----~~~ekp--------------------------~~~~~Giyif~~~vl~~ll~~~~~~~~d~ 212 (409)
++++ .+.||| +++++|+|+|++++|..+++..++...+|
T Consensus 161 ~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~ 240 (436)
T PLN02241 161 ESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDF 240 (436)
T ss_pred hhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccch
Confidence 1111 122332 58899999999999987877655444578
Q ss_pred hhchHHHHHhCCCeEEEEEecCeEEEcCCHHHHHHHHHhhccCCCCCCcccCCCCCccCCCcccCCceEecceEEEEEEC
Q 015296 213 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIG 292 (409)
Q Consensus 213 ~~dli~~ll~~g~~V~a~~~~gyw~DIgt~edy~~an~~ll~~~~~~~~~~~~~~~i~~~~~~~~p~~i~~~~i~~~~Ig 292 (409)
.+|+++.++++|.++++|.++|||.|+|++++|+++++.++... +...+++.+.++++.....||+.+.++.+.+++|+
T Consensus 241 ~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I~ 319 (436)
T PLN02241 241 GSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQP-PKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSIIS 319 (436)
T ss_pred hHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCC-chhhccCCCCcccccCCCCCCcEecCCeEEEeEEc
Confidence 89999999998889999999999999999999999999999865 54556677788999888889999988899999999
Q ss_pred CCcEEcceEEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEE
Q 015296 293 EGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 372 (409)
Q Consensus 293 ~g~~I~~~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i 372 (409)
++|+|++|.|++|+||++|+|+++|.|+++++|+.++|+...........|.+++.||++++|++++|++++.||++|.|
T Consensus 320 ~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i 399 (436)
T PLN02241 320 HGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVI 399 (436)
T ss_pred CCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcEE
Confidence 99999988999999999999999999999999998888776655555556666678999999999999999999999999
Q ss_pred eCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCccC
Q 015296 373 VNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 409 (409)
Q Consensus 373 ~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtvi 409 (409)
.+.+++.+..++|++++|++|+|+|++++.|++||+|
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 400 INKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI 436 (436)
T ss_pred ecccccCCccccccccEEeCCEEEEcCCcEeCCCCCC
Confidence 9999999999999999999998899999999999986
No 4
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=3.9e-49 Score=405.09 Aligned_cols=321 Identities=63% Similarity=1.080 Sum_probs=272.8
Q ss_pred cCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHH--------
Q 015296 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY-------- 158 (409)
Q Consensus 87 ~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~-------- 158 (409)
|++++|||||||.||||+|||..+||||+||+|++|||+|+|++|.++|+++|+|+++|+.+++++|+.+.|
T Consensus 1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~~~~~g 80 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFDGFSGG 80 (429)
T ss_pred CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCccccCCC
Confidence 568999999999999999999999999999998559999999999999999999999999999999885322
Q ss_pred -----------------H--------------------------------------HHHHHcCCCeEEEE----------
Q 015296 159 -----------------A--------------------------------------KQLKAMKVDTTILG---------- 173 (409)
Q Consensus 159 -----------------~--------------------------------------e~~~~~~~d~til~---------- 173 (409)
. ++|++.+.+.+++.
T Consensus 81 ~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~ 160 (429)
T PRK02862 81 FVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASG 160 (429)
T ss_pred EEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhccc
Confidence 0 22222233344332
Q ss_pred -----ecCC----cccCCC--------------------------cEEEEEEEEEeHHHHHHHHhhcCCCCCcchhchHH
Q 015296 174 -----LDDE----RAKEMP--------------------------YIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIP 218 (409)
Q Consensus 174 -----~~~~----~~~ekp--------------------------~~~~~Giyif~~~vl~~ll~~~~~~~~d~~~dli~ 218 (409)
++++ .+.||| +++++|+|+|++++|..+++... +..++.+++++
T Consensus 161 yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~-~~~~~~~dil~ 239 (429)
T PRK02862 161 FGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNP-EYTDFGKEIIP 239 (429)
T ss_pred ceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCC-ChhhhHHHHHH
Confidence 1111 123443 37899999999999987766532 23467789999
Q ss_pred HHHhCCCeEEEEEecCeEEEcCCHHHHHHHHHhhccCCCCCCcccCCCCCccCCCcccCCceEecceEEEEEECCCcEEc
Q 015296 219 GATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIK 298 (409)
Q Consensus 219 ~ll~~g~~V~a~~~~gyw~DIgt~edy~~an~~ll~~~~~~~~~~~~~~~i~~~~~~~~p~~i~~~~i~~~~Ig~g~~I~ 298 (409)
.+++ +.++++|.++|||.|+||+++|+++|+.++....+...++.+..++++...+.||+.+.++.++++.||++|+|.
T Consensus 240 ~l~~-~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig~~~~i~ 318 (429)
T PRK02862 240 EAIR-DYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESIIAEGCIIK 318 (429)
T ss_pred HHhc-cCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEECCCCEEC
Confidence 9976 678999999999999999999999999998444455566777888999999999999988899999999999994
Q ss_pred ceEEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEEeCCCcc
Q 015296 299 NCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSV 378 (409)
Q Consensus 299 ~~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~~~~~v 378 (409)
+|.|++|+||.+|+||++|.|.+|+||+.++|........+...+..++.||++|+|++|+|+++|+||++|.|.+++.+
T Consensus 319 ~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~~~~~~~ 398 (429)
T PRK02862 319 NCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVNKDNV 398 (429)
T ss_pred CcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEEecCCCc
Confidence 49999999999999999999999999999888877777777777777889999999999999999999999999999999
Q ss_pred CCceeecCCeEEeCCeEEEcCCcEeCCCccC
Q 015296 379 QEAARETDGYFIKSGIVTIIKDALIPSGTII 409 (409)
Q Consensus 379 ~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtvi 409 (409)
.+..+..+|++|++|+++|++++++++||+|
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (429)
T PRK02862 399 EEADREDQGFYIRDGIVVVVKNAVIPDGTVI 429 (429)
T ss_pred ccccccccceEeeCCEEEEcCCcCCCCCCCC
Confidence 9999999999999999999999999999976
No 5
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=4.8e-44 Score=365.18 Aligned_cols=292 Identities=38% Similarity=0.685 Sum_probs=235.4
Q ss_pred ccCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHHH------
Q 015296 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYA------ 159 (409)
Q Consensus 86 ~~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~~------ 159 (409)
+|++|+|||||||.||||+|||..+||||+||+|++|||+|+|++|.++|+++|+|+++|+.+++.+|+.+.|.
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~ 81 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLSGLLG 81 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCccccCC
Confidence 57899999999999999999999999999999986699999999999999999999999999999999964331
Q ss_pred --------------------------------------------------------HHHHHcCCCeEEEE----------
Q 015296 160 --------------------------------------------------------KQLKAMKVDTTILG---------- 173 (409)
Q Consensus 160 --------------------------------------------------------e~~~~~~~d~til~---------- 173 (409)
++|...+.+.+++.
T Consensus 82 ~~~~~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~ 161 (407)
T PRK00844 82 NYITPVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASA 161 (407)
T ss_pred CeEEECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHccc
Confidence 12222223333332
Q ss_pred -----ecCC----cccCCC------------cEEEEEEEEEeHHHHHHHHhhcC---CCCCcchhchHHHHHhCCCeEEE
Q 015296 174 -----LDDE----RAKEMP------------YIASMGIYVISKDVMLNLLRDKF---PGANDFGSEVIPGATSIGMRVQA 229 (409)
Q Consensus 174 -----~~~~----~~~ekp------------~~~~~Giyif~~~vl~~ll~~~~---~~~~d~~~dli~~ll~~g~~V~a 229 (409)
++++ .+.+|| .++++|+|+|++++|..+++... .+..++.+|+++.+++++ ++.+
T Consensus 162 ~Gvv~~d~~g~v~~~~eKp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~dii~~l~~~~-~v~~ 240 (407)
T PRK00844 162 FGVIEVDPDGRIRGFLEKPADPPGLPDDPDEALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPRLVERG-RAYV 240 (407)
T ss_pred CCEEEECCCCCEEEEEECCCCcccccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcccccchhhHHHHHhccC-eEEE
Confidence 1111 233454 37899999999999866655321 133567789999999976 7999
Q ss_pred EEe------------cCeEEEcCCHHHHHHHHHhhccCCCCCCcccCCCCCccCCCcccCCceEec-c----eEEEEEEC
Q 015296 230 YLY------------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD-A----DVTDSVIG 292 (409)
Q Consensus 230 ~~~------------~gyw~DIgt~edy~~an~~ll~~~~~~~~~~~~~~~i~~~~~~~~p~~i~~-~----~i~~~~Ig 292 (409)
|.+ +|||.|||++++|+++|+.+++.. +...++++..++++..+..||+.+.. + .+.+++||
T Consensus 241 ~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 319 (407)
T PRK00844 241 YDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVH-PVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVS 319 (407)
T ss_pred EEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCC-CccccCCCCCcccccCCCCCCceEecCCCccceEEeCEEc
Confidence 977 599999999999999999999765 44556677778888888889988863 2 47889999
Q ss_pred CCcEEcceEEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEE
Q 015296 293 EGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 372 (409)
Q Consensus 293 ~g~~I~~~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i 372 (409)
++|.|++|+|++|+||++|+|+++|.|++|+||++ +.||++++|.+|+|+++++||+++.|
T Consensus 320 ~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~-------------------~~i~~~~~i~~~ii~~~~~i~~~~~i 380 (407)
T PRK00844 320 AGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDG-------------------VRIGRGAVVRRAILDKNVVVPPGATI 380 (407)
T ss_pred CCCEECCeeeEcCEECCCCEECCCCEEeeeEECCC-------------------CEECCCCEEEeeEECCCCEECCCCEE
Confidence 99999878999999999999999999999999998 46999999999999999999999999
Q ss_pred eCCCccCCceeecCCeEE-eCCeEEEcCCcEe
Q 015296 373 VNSDSVQEAARETDGYFI-KSGIVTIIKDALI 403 (409)
Q Consensus 373 ~~~~~v~~~~~~~~g~~i-~~g~v~i~~~~~I 403 (409)
.++ .+.+ +.++.+ .+|+++|+++++|
T Consensus 381 ~~~---~~~~--~~~~~~~~~~~~~i~~~~~~ 407 (407)
T PRK00844 381 GVD---LEED--RRRFTVSEGGIVVVPKGQRV 407 (407)
T ss_pred CCC---cccc--ccceEeccceEEEeCCCCCC
Confidence 764 1222 335566 4888888888764
No 6
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=3e-43 Score=355.87 Aligned_cols=287 Identities=39% Similarity=0.653 Sum_probs=235.8
Q ss_pred cCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHH---------
Q 015296 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRA--------- 157 (409)
Q Consensus 87 ~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~--------- 157 (409)
|++|+|||||||+||||+|||+.+||||+||+|++|||+|+|++|.++|+++|+|+++|+.+++++|+.+.
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 80 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRIN 80 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCCC
Confidence 67899999999999999999999999999999865999999999999999999999999999999988420
Q ss_pred --------H---------H--------------------------------------HHHHHcCCCeEEEE---------
Q 015296 158 --------Y---------A--------------------------------------KQLKAMKVDTTILG--------- 173 (409)
Q Consensus 158 --------~---------~--------------------------------------e~~~~~~~d~til~--------- 173 (409)
| . +.|...+.+.+++.
T Consensus 81 ~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~ 160 (380)
T PRK05293 81 GGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEAS 160 (380)
T ss_pred CCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhhcc
Confidence 1 0 12222233444332
Q ss_pred ------ecCC----cccCCC-----cEEEEEEEEEeHHHHHHHHhhcC---CCCCcchhchHHHHHhCCCeEEEEEecCe
Q 015296 174 ------LDDE----RAKEMP-----YIASMGIYVISKDVMLNLLRDKF---PGANDFGSEVIPGATSIGMRVQAYLYDGY 235 (409)
Q Consensus 174 ------~~~~----~~~ekp-----~~~~~Giyif~~~vl~~ll~~~~---~~~~d~~~dli~~ll~~g~~V~a~~~~gy 235 (409)
++++ .+.+|| .+.++|+|+|++++|..+++... .+..+|.+|+++.++++|.++.+|.+++|
T Consensus 161 ~yG~v~~d~~g~V~~~~eKp~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i~~l~~~~~~v~~~~~~g~ 240 (380)
T PRK05293 161 RFGIMNTDENMRIVEFEEKPKNPKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGY 240 (380)
T ss_pred ccCEEEECCCCcEEEEEeCCCCCCcceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHHHHHhhcCCeEEEEEeCCE
Confidence 1111 234555 57899999999999877765432 12346778999999988889999999999
Q ss_pred EEEcCCHHHHHHHHHhhccCCCCCCcccCCCCCccCCCcccCCceEe-cceEEEEEECCCcEEcceEEeceEECCCCEEC
Q 015296 236 WEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCIS 314 (409)
Q Consensus 236 w~DIgt~edy~~an~~ll~~~~~~~~~~~~~~~i~~~~~~~~p~~i~-~~~i~~~~Ig~g~~I~~~~I~~svIg~~~~Ig 314 (409)
|.|+||+++|++|++.++... +...++++...+++...+.+|+.+. ++.|.++.||++|.|+. .+++|+||++|+|+
T Consensus 241 w~digt~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~Ig~~~~I~~-~v~~s~ig~~~~I~ 318 (380)
T PRK05293 241 WKDVGTIESLWEANMELLRPE-NPLNLFDRNWRIYSVNPNLPPQYIAENAKVKNSLVVEGCVVYG-TVEHSVLFQGVQVG 318 (380)
T ss_pred EEeCCCHHHHHHHHHHHcCCC-chhhhcCCCCceecCCcCCCCCEECCCCEEecCEECCCCEEcc-eecceEEcCCCEEC
Confidence 999999999999999988765 4456677777788888888999998 78899999999999986 67899999999999
Q ss_pred CCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCe
Q 015296 315 EGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI 394 (409)
Q Consensus 315 ~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~ 394 (409)
++|.|++|+|+++ +.||++++|.+|+|+++++||+++.+.++.. ++
T Consensus 319 ~~~~i~~svi~~~-------------------~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~---------------~~ 364 (380)
T PRK05293 319 EGSVVKDSVIMPG-------------------AKIGENVVIERAIIGENAVIGDGVIIGGGKE---------------VI 364 (380)
T ss_pred CCCEEECCEEeCC-------------------CEECCCeEEeEEEECCCCEECCCCEEcCCCc---------------ee
Confidence 9999999999998 4799999999999999999999999976543 13
Q ss_pred EEEcCCcEeCCCccC
Q 015296 395 VTIIKDALIPSGTII 409 (409)
Q Consensus 395 v~i~~~~~Ip~gtvi 409 (409)
++||++++|+++++|
T Consensus 365 ~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 365 TVIGENEVIGVGTVI 379 (380)
T ss_pred EEEeCCCCCCCCcEe
Confidence 567777888877765
No 7
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=4.9e-43 Score=359.55 Aligned_cols=296 Identities=35% Similarity=0.639 Sum_probs=238.7
Q ss_pred CccccCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHHH---
Q 015296 83 DPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYA--- 159 (409)
Q Consensus 83 ~~~~~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~~--- 159 (409)
.+.+|++++|||||||+||||+|||+.+||||+||+|++|||+|+|++|.++|+++|+|+++|+.+++.+|+.+.|.
T Consensus 9 ~~~~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~ 88 (425)
T PRK00725 9 ARQLTRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFFR 88 (425)
T ss_pred hHhhhcceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhcccc
Confidence 34556889999999999999999999999999999986459999999999999999999999999999999875430
Q ss_pred -------------------------------------------------------------HHHHHcCCCeEEEE-----
Q 015296 160 -------------------------------------------------------------KQLKAMKVDTTILG----- 173 (409)
Q Consensus 160 -------------------------------------------------------------e~~~~~~~d~til~----- 173 (409)
+.|.+.+.+.+++.
T Consensus 89 ~~~~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~ 168 (425)
T PRK00725 89 EELGEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPR 168 (425)
T ss_pred cCCCCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecch
Confidence 22223334444432
Q ss_pred ----------ecCC----cccCCC------------cEEEEEEEEEeHHHHHHHHhhcC---CCCCcchhchHHHHHhCC
Q 015296 174 ----------LDDE----RAKEMP------------YIASMGIYVISKDVMLNLLRDKF---PGANDFGSEVIPGATSIG 224 (409)
Q Consensus 174 ----------~~~~----~~~ekp------------~~~~~Giyif~~~vl~~ll~~~~---~~~~d~~~dli~~ll~~g 224 (409)
++++ .+.||| .++++|+|+|++++|..+++... ....+|.+|+++.+++++
T Consensus 169 ~~~~~yG~v~~d~~~~V~~~~EKp~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~ 248 (425)
T PRK00725 169 EEASAFGVMAVDENDRITAFVEKPANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEG 248 (425)
T ss_pred hhcccceEEEECCCCCEEEEEECCCCccccccCccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHHHhccC
Confidence 1211 234454 37899999999999876665421 123467789999999855
Q ss_pred CeEEEEEec-----------CeEEEcCCHHHHHHHHHhhccCCCCCCcccCCCCCccCCCcccCCceEec------ceEE
Q 015296 225 MRVQAYLYD-----------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD------ADVT 287 (409)
Q Consensus 225 ~~V~a~~~~-----------gyw~DIgt~edy~~an~~ll~~~~~~~~~~~~~~~i~~~~~~~~p~~i~~------~~i~ 287 (409)
++++|.++ +||.|+|++++|+++|+.++... +...+++...++++..+..||+.+.. +.+.
T Consensus 249 -~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~-~~~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~ 326 (425)
T PRK00725 249 -KVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVT-PELDLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAI 326 (425)
T ss_pred -cEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCC-chhhccCCCCccccCCCCCCCCeEeccCCCCcceEE
Confidence 79999996 69999999999999999998764 44556677778888888889988752 4578
Q ss_pred EEEECCCcEEcceEEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCEEC
Q 015296 288 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIG 367 (409)
Q Consensus 288 ~~~Ig~g~~I~~~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG 367 (409)
+++||+||+|.+|.|++|+||++|+|+++|.|++|+||++ +.||++++|.+|+|+++++|+
T Consensus 327 ~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~-------------------~~I~~~~~i~~~ii~~~~~i~ 387 (425)
T PRK00725 327 NSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPD-------------------VNVGRSCRLRRCVIDRGCVIP 387 (425)
T ss_pred eCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCC-------------------CEECCCCEEeeEEECCCCEEC
Confidence 9999999999559999999999999999999999999998 579999999999999999999
Q ss_pred CCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEe
Q 015296 368 DNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALI 403 (409)
Q Consensus 368 ~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~I 403 (409)
+++.|.. ...++..+ ..++..|+|+|++++.+
T Consensus 388 ~~~~i~~-~~~~~~~~---~~~~~~~~~~i~~~~~~ 419 (425)
T PRK00725 388 EGMVIGE-DPEEDAKR---FRRSEEGIVLVTREMLD 419 (425)
T ss_pred CCCEECC-CCCCCCce---eEecCccEEEECCCccc
Confidence 9999943 34444444 46778999999998654
No 8
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-41 Score=338.43 Aligned_cols=280 Identities=27% Similarity=0.422 Sum_probs=222.1
Q ss_pred ceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHHH---------
Q 015296 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYA--------- 159 (409)
Q Consensus 89 ~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~~--------- 159 (409)
.|+|||||||+||||+|||.++||||+||+| +|||+|+|++|.++|+++|+++++|..+++++|+++.+.
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~g-kPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~~~I~y~~ 79 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAG-KPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLGVRITYVV 79 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCC-ccHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcccccCCceEEEe
Confidence 3899999999999999999999999999996 699999999999999999999999999999999998422
Q ss_pred ----------------------------------------HHHHHcCCCeEEE-------------EecCC-----cccC
Q 015296 160 ----------------------------------------KQLKAMKVDTTIL-------------GLDDE-----RAKE 181 (409)
Q Consensus 160 ----------------------------------------e~~~~~~~d~til-------------~~~~~-----~~~e 181 (409)
++|++.+...+++ ..++. .+.+
T Consensus 80 e~~~lGTag~l~~a~~~l~~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~Gvv~~~~~~~~v~~f~e 159 (358)
T COG1208 80 EKEPLGTAGALKNALDLLGGDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVEFRE 159 (358)
T ss_pred cCCcCccHHHHHHHHHhcCCCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCCCCcCceEEecCCCceEEEEEe
Confidence 3444443333332 12211 2445
Q ss_pred CC-------cEEEEEEEEEeHHHHHHHHhhcCCCCCcchhchHHHHHhCCCeEEEEEecCeEEEcCCHHHHHHHHHhhcc
Q 015296 182 MP-------YIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 254 (409)
Q Consensus 182 kp-------~~~~~Giyif~~~vl~~ll~~~~~~~~d~~~dli~~ll~~g~~V~a~~~~gyw~DIgt~edy~~an~~ll~ 254 (409)
|| .++|+|+|+|++++|+++ .. ....+|..+++|.+++++..+++|.++|||.|||+|++|.+|+..++.
T Consensus 160 kp~~~~~~~~~in~Giyi~~~~v~~~i-~~--~~~~~~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~ 236 (358)
T COG1208 160 KPGPEEPPSNLINAGIYIFDPEVFDYI-EK--GERFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLR 236 (358)
T ss_pred cCCCCCCCCceEEeEEEEECHHHhhhc-cc--CCcccchhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHh
Confidence 55 699999999999999833 22 233566678999999987679999999999999999999999998886
Q ss_pred CCCCCCcccCCCCCccCCCc-ccCCceEecceEEEEEECCCcEEcc-eEEe-ceEECCCCEECCCCEEeceEEeCCcccc
Q 015296 255 KPIPDFSFYDRSAPIYTQPR-YLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYE 331 (409)
Q Consensus 255 ~~~~~~~~~~~~~~i~~~~~-~~~p~~i~~~~i~~~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~s~i~~~~~~~ 331 (409)
.... ... ........ ... +. .+++++|+++|.|++ |.|+ +++||++|+|++++.|.+|+||++
T Consensus 237 ~~~~-~~~----~~~~~~~~~~~~-~~----i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~---- 302 (358)
T COG1208 237 GDGK-SPL----GPIEEPVVIIRS-AY----IIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDN---- 302 (358)
T ss_pred cccc-ccc----cccccccccccc-ce----EeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcC----
Confidence 4422 100 01101100 001 11 135678889999998 8888 899999999999999999999998
Q ss_pred cccchhhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCccC
Q 015296 332 TDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 409 (409)
Q Consensus 332 ~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtvi 409 (409)
+.||++++|.++||+.||.||+++ . +++ +.++.++.+..| +++++++.+.++.++
T Consensus 303 ---------------~~i~~~~~i~~sIi~~~~~ig~~~-~-----i~d-~~~g~~~~i~~g-~~~~~~~~~~~~~~~ 357 (358)
T COG1208 303 ---------------VVIGHGSYIGDSIIGENCKIGASL-I-----IGD-VVIGINSEILPG-VVVGPGSVVESGEIE 357 (358)
T ss_pred ---------------CEECCCCEEeeeEEcCCcEECCce-e-----ecc-eEecCceEEcCc-eEeCCCccccCcccc
Confidence 469999999999999999999933 2 888 888999999999 889999998888753
No 9
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=3e-39 Score=325.58 Aligned_cols=267 Identities=29% Similarity=0.514 Sum_probs=211.0
Q ss_pred CceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChh-hHHHHHHHH--HH-----
Q 015296 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA-SLNRHLSRA--YA----- 159 (409)
Q Consensus 88 ~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~-~i~~~l~~~--~~----- 159 (409)
+.|+|||||+|+||||+|||..+||||+||+|++|||+|+|++|.++|+++|+|+++|+.+ ++++||.+. |.
T Consensus 1 ~~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~ 80 (369)
T TIGR02092 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKR 80 (369)
T ss_pred CcEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCccccc
Confidence 4689999999999999999999999999999744999999999999999999999999886 999998531 10
Q ss_pred ------------------------------------------------------HHHHHcCCCeEEEEe-----------
Q 015296 160 ------------------------------------------------------KQLKAMKVDTTILGL----------- 174 (409)
Q Consensus 160 ------------------------------------------------------e~~~~~~~d~til~~----------- 174 (409)
++|++.+.+.|++..
T Consensus 81 ~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g 160 (369)
T TIGR02092 81 DGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYD 160 (369)
T ss_pred CcEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHccccC
Confidence 223333344444321
Q ss_pred -----cCCc----ccC--C---CcEEEEEEEEEeHHHHHHHHhhcCC-CCCcchhchHHHHHhCCCeEEEEEecCeEEEc
Q 015296 175 -----DDER----AKE--M---PYIASMGIYVISKDVMLNLLRDKFP-GANDFGSEVIPGATSIGMRVQAYLYDGYWEDI 239 (409)
Q Consensus 175 -----~~~~----~~e--k---p~~~~~Giyif~~~vl~~ll~~~~~-~~~d~~~dli~~ll~~g~~V~a~~~~gyw~DI 239 (409)
+++. +.+ . +...++|+|+|++++|..+++...+ +..++..++++.+++ +.++++|.+++||.|+
T Consensus 161 ~vv~~~~~g~v~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~d~i~~~~~-~~~v~~~~~~g~w~dI 239 (369)
T TIGR02092 161 TILRFDESGKVKSIGQNLNPEEEENISLDIYIVSTDLLIELLYECIQRGKLTSLEELIRENLK-ELNINAYEYTGYLANI 239 (369)
T ss_pred cEEEEcCCCCEEeccccCCCCCcceeeeeEEEEEHHHHHHHHHHHhhcCccccHHHHHHHHhc-cCcEEEEecCCceeEc
Confidence 1110 111 1 2468999999999988666654332 222455789998886 5689999999999999
Q ss_pred CCHHHHHHHHHhhccCCCCCCcccCCCCCccCCCcccCCceEe-cceEEEEEECCCcEEcceEEeceEECCCCEECCCCE
Q 015296 240 GTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAI 318 (409)
Q Consensus 240 gt~edy~~an~~ll~~~~~~~~~~~~~~~i~~~~~~~~p~~i~-~~~i~~~~Ig~g~~I~~~~I~~svIg~~~~Ig~~~~ 318 (409)
||+++|++|++++++.......+.....++++.....+|+.+. ++.|.+|+||+||.|+ +.|++|+||++|+|+++|.
T Consensus 240 gt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i~~~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~ 318 (369)
T TIGR02092 240 NSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKVENSLVANGCIIE-GKVENSILSRGVHVGKDAL 318 (369)
T ss_pred CCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEEEEeEEcCCCEEe-eEEeCCEECCCCEECCCCE
Confidence 9999999999999987633211212334555555567999998 7889999999999998 4788999999999999999
Q ss_pred EeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEEeCC
Q 015296 319 IEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNS 375 (409)
Q Consensus 319 I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~~~ 375 (409)
|.+++++++ +.|++++++++|+|+++++||+++.+.+.
T Consensus 319 i~~sii~~~-------------------~~I~~~~~i~~~ii~~~~~v~~~~~~~~~ 356 (369)
T TIGR02092 319 IKNCIIMQR-------------------TVIGEGAHLENVIIDKDVVIEPNVKIAGT 356 (369)
T ss_pred EEeeEEeCC-------------------CEECCCCEEEEEEECCCCEECCCCEeCCC
Confidence 999999987 47999999999999999999999999544
No 10
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=1.3e-37 Score=312.61 Aligned_cols=262 Identities=48% Similarity=0.867 Sum_probs=205.0
Q ss_pred EEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHH-------------
Q 015296 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY------------- 158 (409)
Q Consensus 92 aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~------------- 158 (409)
|||||||.||||+|||+.+||||+||+|++|||+|+|++|.++|+++|+|+++++.+++.+|+.+.|
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFDGFIDGFVTLL 80 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCccCccCCCEEEe
Confidence 6999999999999999999999999998448999999999999999999999999999998886321
Q ss_pred ------------H--------------------------------------HHHHHcCCCeEEEE---------------
Q 015296 159 ------------A--------------------------------------KQLKAMKVDTTILG--------------- 173 (409)
Q Consensus 159 ------------~--------------------------------------e~~~~~~~d~til~--------------- 173 (409)
. +.|.+.+.+.+++.
T Consensus 81 ~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~ 160 (361)
T TIGR02091 81 PAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQ 160 (361)
T ss_pred CCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEE
Confidence 0 11222222333321
Q ss_pred ecCC----cccCCC-----c-------EEEEEEEEEeHHHHHHHHhhcC---CCCCcchhchHHHHHhCCCeEEEEEecC
Q 015296 174 LDDE----RAKEMP-----Y-------IASMGIYVISKDVMLNLLRDKF---PGANDFGSEVIPGATSIGMRVQAYLYDG 234 (409)
Q Consensus 174 ~~~~----~~~ekp-----~-------~~~~Giyif~~~vl~~ll~~~~---~~~~d~~~dli~~ll~~g~~V~a~~~~g 234 (409)
++++ .+.+|| . ++++|+|+|++++|..+++... ....++.+++++.+++++ ++++|.+++
T Consensus 161 ~d~~~~v~~~~ekp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~l~~~~-~v~~~~~~~ 239 (361)
T TIGR02091 161 VDEDGRIVDFEEKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEG-SVQAYLFSG 239 (361)
T ss_pred ECCCCCEEEEEECCCCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHHHHHhhcC-ceEEEeeCC
Confidence 1211 233444 1 7899999999999865655421 123456689999999854 899999999
Q ss_pred eEEEcCCHHHHHHHHHhhccCCCCCCcccCCCCCccCCC-cccCCceEe-cceEEEEEECCCcEEcceEEeceEECCCCE
Q 015296 235 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQP-RYLPPSKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSC 312 (409)
Q Consensus 235 yw~DIgt~edy~~an~~ll~~~~~~~~~~~~~~~i~~~~-~~~~p~~i~-~~~i~~~~Ig~g~~I~~~~I~~svIg~~~~ 312 (409)
||.||||+++|+.|++.++.+. +....+....++++.. .+.|++.+. .+.+.+++||++|+|+++.|.+++||++|+
T Consensus 240 ~w~digt~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~I~~~~v~~s~i~~~~~ 318 (361)
T TIGR02091 240 YWRDVGTIDSFWEANMDLVSVV-PPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSEGCIISGATVSHSVLGIRVR 318 (361)
T ss_pred EEEECCCHHHHHHHHHHHhCCC-chhhccccCCceecCCCCCCCceEecCCCEEECCEECCCCEECCCEEEccEECCCCE
Confidence 9999999999999999999765 3233344444444433 334455555 457888999999999987788999999999
Q ss_pred ECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEEeC
Q 015296 313 ISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 374 (409)
Q Consensus 313 Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~~ 374 (409)
|+++|.|++|+++++ +.||++++|++|+|++++.||.++.|.|
T Consensus 319 I~~~~~i~~sii~~~-------------------~~v~~~~~l~~~ivg~~~~i~~~~~i~~ 361 (361)
T TIGR02091 319 IGSGSTVEDSVIMGD-------------------VGIGRGAVIRNAIIDKNVRIGEGVVIGN 361 (361)
T ss_pred ECCCCEEeeeEEeCC-------------------CEECCCCEEeeeEECCCCEECCCCEeCC
Confidence 999999999999987 4799999999999999999999998864
No 11
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.3e-35 Score=304.38 Aligned_cols=306 Identities=15% Similarity=0.177 Sum_probs=230.3
Q ss_pred ceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHHH---------
Q 015296 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYA--------- 159 (409)
Q Consensus 89 ~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~~--------- 159 (409)
+++|||||||.||||++ .+||||+|++| +|||+|+++.|.++ +++|.|++++..+++++|+.+.+.
T Consensus 2 ~~~aiIlAaG~GtRl~~---~~pK~Llpi~g-kPli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~~~v~~~~~~~ 76 (430)
T PRK14359 2 KLSIIILAAGKGTRMKS---SLPKVLHTICG-KPMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYFPGVIFHTQDL 76 (430)
T ss_pred CccEEEEcCCCCccCCC---CCCceeCEECC-ccHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcCCceEEEEecC
Confidence 47899999999999986 78999999998 59999999999987 789999999999999988865210
Q ss_pred -----------------------------------HHHHHcCCCeEEEEe-------------cCC---cccCCC-----
Q 015296 160 -----------------------------------KQLKAMKVDTTILGL-------------DDE---RAKEMP----- 183 (409)
Q Consensus 160 -----------------------------------e~~~~~~~d~til~~-------------~~~---~~~ekp----- 183 (409)
+.+.+.+.+.++... ++. .+.++|
T Consensus 77 ~~~~gt~~al~~~~~~~d~vlv~~gD~p~~~~~~l~~l~~~~~~~~v~~~~~~~~~~~g~v~~d~g~v~~i~e~~~~~~~ 156 (430)
T PRK14359 77 ENYPGTGGALMGIEPKHERVLILNGDMPLVEKDELEKLLENDADIVMSVFHLADPKGYGRVVIENGQVKKIVEQKDANEE 156 (430)
T ss_pred ccCCCcHHHHhhcccCCCeEEEEECCccCCCHHHHHHHHhCCCCEEEEEEEcCCCccCcEEEEcCCeEEEEEECCCCCcc
Confidence 111111233332221 111 112222
Q ss_pred ----cEEEEEEEEEeHHHHHHHHhhcCC---CCCcchhchHHHHHhCCCeEEEEEec-CeEEEcCCHHHHHHHHHhhccC
Q 015296 184 ----YIASMGIYVISKDVMLNLLRDKFP---GANDFGSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGITKK 255 (409)
Q Consensus 184 ----~~~~~Giyif~~~vl~~ll~~~~~---~~~d~~~dli~~ll~~g~~V~a~~~~-gyw~DIgt~edy~~an~~ll~~ 255 (409)
+..++|+|+|++++|..+++.... ..+.++.|+++.++++|.++.++.++ ++|.||++++||+.|+..+..+
T Consensus 157 ~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~ 236 (430)
T PRK14359 157 ELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQER 236 (430)
T ss_pred cccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHH
Confidence 467999999999999877553221 23456689999999988999999997 5899999999999998655433
Q ss_pred CCC------------CCcccCCCCCccCCCcccCCceEe-cceEEEEEECCCcEEcceEEeceEECCCCEECCCCEEece
Q 015296 256 PIP------------DFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDT 322 (409)
Q Consensus 256 ~~~------------~~~~~~~~~~i~~~~~~~~p~~i~-~~~i~~~~Ig~g~~I~~~~I~~svIg~~~~Ig~~~~I~~s 322 (409)
..+ ...++++++.+.....+.+++.|. ++.+++++|+++|.|+++.+.+++||++|+|++++.|+++
T Consensus 237 ~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~ 316 (430)
T PRK14359 237 IKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSKIENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNT 316 (430)
T ss_pred HHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeEEEeeEECCCCEEeccEEeCCEECCCCEECCCcEEecc
Confidence 211 112233344444444455566665 5667889999999998878899999999999999999999
Q ss_pred EEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEEeCC-------CccCCceeecCCeEEeCCeE
Q 015296 323 LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNS-------DSVQEAARETDGYFIKSGIV 395 (409)
Q Consensus 323 ~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~~~-------~~v~~~~~~~~g~~i~~g~v 395 (409)
.|++++.++... + ++. .||+.+.|.+|+||++|.||.++++.+. +.+++++.+|.++.|..+ +
T Consensus 317 ~ig~~~~i~~~~-----~-~~~---~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~-~ 386 (430)
T PRK14359 317 HIGNFVETKNAK-----L-NGV---KAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAP-V 386 (430)
T ss_pred EEcCcEEEcccE-----e-ccc---cccccccccCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCC-c
Confidence 998886554422 2 343 6999999999999999999999999765 457777778888888877 7
Q ss_pred EEcCCcEeCCCccC
Q 015296 396 TIIKDALIPSGTII 409 (409)
Q Consensus 396 ~i~~~~~Ip~gtvi 409 (409)
.|++++.|++|++|
T Consensus 387 ~ig~~~~i~~g~~v 400 (430)
T PRK14359 387 NIEDNVLIAAGSTV 400 (430)
T ss_pred EECCCCEECCCCEE
Confidence 89999999999875
No 12
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=2.4e-35 Score=295.53 Aligned_cols=261 Identities=23% Similarity=0.348 Sum_probs=184.4
Q ss_pred EEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEccc-ChhhHHHHHHHH--HH--------
Q 015296 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF-NSASLNRHLSRA--YA-------- 159 (409)
Q Consensus 91 ~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~-~~~~i~~~l~~~--~~-------- 159 (409)
+|||||||.||||+|||..+||||+|++|+ |||+|+|+++.++|+++|++++++ +.+++++|+.+. |.
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEGERFGAKITYIVQ 79 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhcccccCceEEEEEC
Confidence 589999999999999999999999999985 999999999999999999999999 889999998741 21
Q ss_pred ---------------------------------------HHHHHcCCCeEEEE-------------ecCC----cccCCC
Q 015296 160 ---------------------------------------KQLKAMKVDTTILG-------------LDDE----RAKEMP 183 (409)
Q Consensus 160 ---------------------------------------e~~~~~~~d~til~-------------~~~~----~~~ekp 183 (409)
++|.+.+.+.+++. ++++ .+.+||
T Consensus 80 ~~~~G~~~al~~a~~~l~~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~~~~~g~~~~~~~~~v~~~~ekp 159 (353)
T TIGR01208 80 GEPLGLAHAVYTARDFLGDDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRDPTAFGVAVLEDGKRILKLVEKP 159 (353)
T ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCChhhCeEEEEcCCCcEEEEEECC
Confidence 22333344544432 1211 123444
Q ss_pred -----cEEEEEEEEEeHHHHHHHHhhcCC--CCCcchhchHHHHHhCCCeEEEEEecCeEEEcCCHHHHHHHHHhhccCC
Q 015296 184 -----YIASMGIYVISKDVMLNLLRDKFP--GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 256 (409)
Q Consensus 184 -----~~~~~Giyif~~~vl~~ll~~~~~--~~~d~~~dli~~ll~~g~~V~a~~~~gyw~DIgt~edy~~an~~ll~~~ 256 (409)
...++|+|+|++.+++.+ +...+ ..+.+..++++.++++|.++++|.++|||.||||+++|++|++.++++.
T Consensus 160 ~~~~~~~~~~Giy~~~~~l~~~l-~~~~~~~~~e~~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~ 238 (353)
T TIGR01208 160 KEPPSNLAVVGLYMFRPLIFEAI-KNIKPSWRGELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEV 238 (353)
T ss_pred CCCCccceEEEEEEECHHHHHHH-HhcCCCCCCcEEHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhc
Confidence 578999999999777654 43222 2234568999999998889999999999999999999999999999853
Q ss_pred CCCCcccCCCCCccCCCcccCCceEe-cceEEEEEECCCcEEcc-eEEeceEECCCCEECCCCEEeceEEeCCccccccc
Q 015296 257 IPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDA 334 (409)
Q Consensus 257 ~~~~~~~~~~~~i~~~~~~~~p~~i~-~~~i~~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~ 334 (409)
...+. .+.+.+.+.+|+.+. ++.|.+++|+++|+|++ |.|++++|+.+|.|+++|.|+++.|.+. .+
T Consensus 239 ~~~~~------~i~~~~~i~~~~~i~~~~~i~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s-~i---- 307 (353)
T TIGR01208 239 EREVQ------GVDDESKIRGRVVVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHS-IV---- 307 (353)
T ss_pred ccccC------CcCCCCEEcCCEEECCCCEEeCCEEECCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEee-EE----
Confidence 22111 144555666777776 66676666666667766 6666666666666666666654433211 10
Q ss_pred chhhhccCCCcceEeCCC-CEEcceEeCCCCEECCCcEEe
Q 015296 335 DRRFLAAKGSVPIGIGKN-SHIKRAIIDKNARIGDNVKIV 373 (409)
Q Consensus 335 ~~~~~~~~g~~~v~Ig~~-~~I~~~ii~~n~~IG~~~~i~ 373 (409)
.++ +.|+.+ +++.+++++++++|+.++.+.
T Consensus 308 ------~~~---~~i~~~~~~~~~~ii~~~~~i~~~~~~~ 338 (353)
T TIGR01208 308 ------LDE---SVIEGVQARIVDSVIGKKVRIKGNRRRP 338 (353)
T ss_pred ------cCC---CEEcCCcceeecCEEcCCCEECCCcccc
Confidence 001 135555 355666666666666666664
No 13
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.7e-35 Score=305.10 Aligned_cols=318 Identities=18% Similarity=0.256 Sum_probs=221.5
Q ss_pred cCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHH--HH-----
Q 015296 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRA--YA----- 159 (409)
Q Consensus 87 ~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~--~~----- 159 (409)
|++++|||||||.|+||++ .+||+|+|++|+ |||+|+|+++.++|++++++++++..+++.+|+.+. +.
T Consensus 1 m~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~~~i~~~~~~ 76 (459)
T PRK14355 1 MNNLAAIILAAGKGTRMKS---DLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGDGDVSFALQE 76 (459)
T ss_pred CCcceEEEEcCCCCcccCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccCCceEEEecC
Confidence 5679999999999999984 689999999985 999999999999999999999999988888888642 10
Q ss_pred ------------------------------------------HHHHHcCCCeEEEE-------------ecCC----ccc
Q 015296 160 ------------------------------------------KQLKAMKVDTTILG-------------LDDE----RAK 180 (409)
Q Consensus 160 ------------------------------------------e~~~~~~~d~til~-------------~~~~----~~~ 180 (409)
+.|...+.+.+++. ++++ ++.
T Consensus 77 ~~~Gt~~al~~a~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~g~v~~d~~g~v~~~~ 156 (459)
T PRK14355 77 EQLGTGHAVACAAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLENPFGYGRIVRDADGRVLRIV 156 (459)
T ss_pred CCCCHHHHHHHHHHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCcCCEEEEcCCCCEEEEE
Confidence 11112223333321 1221 123
Q ss_pred CCC---------cEEEEEEEEEeHHHHHHHHhhcCC---CCCcchhchHHHHHhCCCeEEEEEecCe--EEEcCCHHHHH
Q 015296 181 EMP---------YIASMGIYVISKDVMLNLLRDKFP---GANDFGSEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFY 246 (409)
Q Consensus 181 ekp---------~~~~~Giyif~~~vl~~ll~~~~~---~~~d~~~dli~~ll~~g~~V~a~~~~gy--w~DIgt~edy~ 246 (409)
+|| +++++|+|+|+++.|...++.... ..+.+.+|+++.++++|.++.+|++++| |.|+||+++|+
T Consensus 157 ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~ 236 (459)
T PRK14355 157 EEKDATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLA 236 (459)
T ss_pred EcCCCChhHhhccEEEEEEEEEeHHHHHHHHHHcCccccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHH
Confidence 332 578999999999986555553322 2345568999999998999999999998 89999999999
Q ss_pred HHHHhhccCCC-----CCCcccCCCC-CccCCCcccCCceEe-cceEE-EEEECCCcEEcc-eEEeceEECCCCEECCCC
Q 015296 247 NANLGITKKPI-----PDFSFYDRSA-PIYTQPRYLPPSKML-DADVT-DSVIGEGCVIKN-CKIHHSVVGLRSCISEGA 317 (409)
Q Consensus 247 ~an~~ll~~~~-----~~~~~~~~~~-~i~~~~~~~~p~~i~-~~~i~-~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~ 317 (409)
++++.++.... .+..++++.+ .+...+.+.+.+.+. ++.|. +++||++|+|+. |.|.+++||++|+|+.+|
T Consensus 237 ~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~ 316 (459)
T PRK14355 237 EAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGS 316 (459)
T ss_pred HHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCe
Confidence 99876654321 1123445443 344455555555555 45554 489999999998 999999999999999999
Q ss_pred EEeceEEeCCcccccccch--hhhccCCCc--------ceEeCCCCEE------cceEeCCCCEECCCcEEeCC------
Q 015296 318 IIEDTLLMGADYYETDADR--RFLAAKGSV--------PIGIGKNSHI------KRAIIDKNARIGDNVKIVNS------ 375 (409)
Q Consensus 318 ~I~~s~i~~~~~~~~~~~~--~~~~~~g~~--------~v~Ig~~~~I------~~~ii~~n~~IG~~~~i~~~------ 375 (409)
.|++++++++++++..... ...++++.. .+.||+++.+ .+++|++|+.||.++++.+.
T Consensus 317 ~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~ 396 (459)
T PRK14355 317 VLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKH 396 (459)
T ss_pred EEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCEECCCceeeeeccccCCEECCCCEEccceeecCcCCcccc
Confidence 9999998888776544321 111222220 0223433333 23567777777777766543
Q ss_pred -CccCCceeecCCeEEeCCeEEEcCCcEeCCCccC
Q 015296 376 -DSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 409 (409)
Q Consensus 376 -~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtvi 409 (409)
..+++++.++.++.|..+ +.||++++|++||+|
T Consensus 397 ~~~ig~~~~ig~~~~i~~~-~~ig~~~~i~a~s~v 430 (459)
T PRK14355 397 RTVIEDDVFVGSDVQFVAP-VTVGRNSLIAAGTTV 430 (459)
T ss_pred CcEecCCeEEcCCCEEeCC-cEECCCCEECCCCEE
Confidence 335566666666666666 778888888888864
No 14
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.4e-34 Score=301.61 Aligned_cols=313 Identities=19% Similarity=0.211 Sum_probs=206.9
Q ss_pred ceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHHH---------
Q 015296 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYA--------- 159 (409)
Q Consensus 89 ~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~~--------- 159 (409)
.+.+||||||+||||+| .+||+|+|++| +|||+|+|+++.++|++++++++++..+++.+++.+...
T Consensus 4 ~~~avILAaG~gtRm~~---~~pK~llpi~g-kpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~~~~~~~~~~~ 79 (482)
T PRK14352 4 PTAVIVLAAGAGTRMRS---DTPKVLHTLAG-RSMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELAPEVDIAVQDE 79 (482)
T ss_pred CceEEEEcCCCCCcCCC---CCCceeceeCC-ccHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccCCccEEEeCCC
Confidence 46899999999999997 58999999998 599999999999999999999999988888887753100
Q ss_pred ------------------------------------------HHHHHcCCCeEEEEe-------------cCC----ccc
Q 015296 160 ------------------------------------------KQLKAMKVDTTILGL-------------DDE----RAK 180 (409)
Q Consensus 160 ------------------------------------------e~~~~~~~d~til~~-------------~~~----~~~ 180 (409)
+.+++.+.+.+++.. +++ ++.
T Consensus 80 ~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~~~~g~V~~~~ 159 (482)
T PRK14352 80 QPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILRDQDGEVTAIV 159 (482)
T ss_pred CCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEECCCCCEEEEE
Confidence 111122223333221 111 234
Q ss_pred CCC---------cEEEEEEEEEeHHHHHHHHhhcCC---CCCcchhchHHHHHhCCCeEEEEEecCeEEEcCCHHHH---
Q 015296 181 EMP---------YIASMGIYVISKDVMLNLLRDKFP---GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAF--- 245 (409)
Q Consensus 181 ekp---------~~~~~Giyif~~~vl~~ll~~~~~---~~~d~~~dli~~ll~~g~~V~a~~~~gyw~DIgt~edy--- 245 (409)
||| .++++|+|+|++++|.++++.... ..+.++.|+++.++++|+++++|++++||.|+|+++.|
T Consensus 160 EKp~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~ 239 (482)
T PRK14352 160 EQKDATPSQRAIREVNSGVYAFDAAVLRSALARLSSDNAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLA 239 (482)
T ss_pred ECCCCCHHHhhcceEEEEEEEEEHHHHHHHHHhhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHH
Confidence 554 258899999999999777654332 13456789999999988899999999999999999887
Q ss_pred ---HHHHHhhccCCCC--------CCcccCCCCCccCCCcccCCceEe-------------cceEEEEEECCCcEEcceE
Q 015296 246 ---YNANLGITKKPIP--------DFSFYDRSAPIYTQPRYLPPSKML-------------DADVTDSVIGEGCVIKNCK 301 (409)
Q Consensus 246 ---~~an~~ll~~~~~--------~~~~~~~~~~i~~~~~~~~p~~i~-------------~~~i~~~~Ig~g~~I~~~~ 301 (409)
..+++.++....+ ...++++...|.+.+++.|.+.+. ++.|.+++||++|.|+++.
T Consensus 240 ~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~ 319 (482)
T PRK14352 240 ALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTH 319 (482)
T ss_pred HHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeee
Confidence 5555544433211 112333333444444444444433 1222333444444443333
Q ss_pred EeceEECCCCEECCCCEEe-ceEEeCCcccccccc-hhhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEEeCC----
Q 015296 302 IHHSVVGLRSCISEGAIIE-DTLLMGADYYETDAD-RRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNS---- 375 (409)
Q Consensus 302 I~~svIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~-~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~~~---- 375 (409)
+.+++||.+|.||++|.|. +++|+.++.++.+.+ ....+.++. .|+..+.+.+++||++|.||.++.+.+.
T Consensus 320 ~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~---~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~ 396 (482)
T PRK14352 320 GSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGT---KVPHLTYVGDADIGEHSNIGASSVFVNYDGVN 396 (482)
T ss_pred eecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCCc---EEccCceecccEECCCcEECCCcEEecccccc
Confidence 3445555555566655554 344444444444332 122233332 4566666677899999999999988753
Q ss_pred ---CccCCceeecCCeEEeCCeEEEcCCcEeCCCccC
Q 015296 376 ---DSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 409 (409)
Q Consensus 376 ---~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtvi 409 (409)
..+++.++++.++.|..| +.|+++++|++|++|
T Consensus 397 ~~~~~IGd~~~iG~~~~i~~~-~~Ig~~~~igags~v 432 (482)
T PRK14352 397 KHRTTIGSHVRTGSDTMFVAP-VTVGDGAYTGAGTVI 432 (482)
T ss_pred CCCCeECCCcEECCCCEEeCC-CEECCCcEECCCCEE
Confidence 567888888888888888 899999999999874
No 15
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.9e-34 Score=296.06 Aligned_cols=313 Identities=18% Similarity=0.191 Sum_probs=212.7
Q ss_pred cccCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHH---H--
Q 015296 85 EASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY---A-- 159 (409)
Q Consensus 85 ~~~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~---~-- 159 (409)
++|+.+.|||||||.||||++ .+||+|+|++| +|||+|+++++.++|+++++|++++..+.+.+++.+.. .
T Consensus 1 ~~~~~~~aiILAaG~gsR~~~---~~pK~ll~v~g-kpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~~~~~~~~ 76 (446)
T PRK14353 1 MTDRTCLAIILAAGEGTRMKS---SLPKVLHPVAG-RPMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKIAPDAEIF 76 (446)
T ss_pred CccccceEEEEcCCCCCccCC---CCCcccCEECC-chHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhccCCCceEE
Confidence 457889999999999999984 58999999998 59999999999999999999999998888887765310 0
Q ss_pred ----------------HHH--------------------------H--HcCCCeEEEEec-------------CC---cc
Q 015296 160 ----------------KQL--------------------------K--AMKVDTTILGLD-------------DE---RA 179 (409)
Q Consensus 160 ----------------e~~--------------------------~--~~~~d~til~~~-------------~~---~~ 179 (409)
+++ . ....+.+++.+. +. .+
T Consensus 77 ~~~~~~G~~~sl~~a~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~~~~~~i~~~~~~~~~~~g~~~~~~g~v~~~ 156 (446)
T PRK14353 77 VQKERLGTAHAVLAAREALAGGYGDVLVLYGDTPLITAETLARLRERLADGADVVVLGFRAADPTGYGRLIVKGGRLVAI 156 (446)
T ss_pred EcCCCCCcHHHHHHHHHHHhccCCCEEEEeCCcccCCHHHHHHHHHhHhcCCcEEEEEEEeCCCCcceEEEECCCeEEEE
Confidence 000 0 112233333211 11 12
Q ss_pred cCCC---------cEEEEEEEEEeHHHHHHHHhhcCC---CCCcchhchHHHHHhCCCeEEEEEec-CeEEEcCCHHHHH
Q 015296 180 KEMP---------YIASMGIYVISKDVMLNLLRDKFP---GANDFGSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFY 246 (409)
Q Consensus 180 ~ekp---------~~~~~Giyif~~~vl~~ll~~~~~---~~~d~~~dli~~ll~~g~~V~a~~~~-gyw~DIgt~edy~ 246 (409)
.||| .+.++|+|+|+++.|..+++.... ..+.+..++++.++++|+++.+++++ ++|.||+|++||.
T Consensus 157 ~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~ 236 (446)
T PRK14353 157 VEEKDASDEERAITLCNSGVMAADGADALALLDRVGNDNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELA 236 (446)
T ss_pred EECCCCChHHhhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHH
Confidence 3443 468899999999887666654321 13345689999999989999999996 5799999999999
Q ss_pred HHHHhhccCC------------CCCCcccCCCCCccCCCcccCCceEecceEEEEEECCCcEEcc-eEEeceEECCCCEE
Q 015296 247 NANLGITKKP------------IPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCI 313 (409)
Q Consensus 247 ~an~~ll~~~------------~~~~~~~~~~~~i~~~~~~~~p~~i~~~~i~~~~Ig~g~~I~~-~~I~~svIg~~~~I 313 (409)
.|+..+..+. .+...++.+.+.|.+++.+.|++.|. .++.||++|.|+. |.|.+++||.+|+|
T Consensus 237 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~~~~I~----~~~~ig~~~~I~~~~~i~~~~Ig~~~~I 312 (446)
T PRK14353 237 EAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEPNVVFG----PGVTVASGAVIHAFSHLEGAHVGEGAEV 312 (446)
T ss_pred HHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECCCCEEC----CCCEECCCCEECCCeEEeccEECCCcEE
Confidence 8886443220 11112333344455555555555443 2345666666665 66666666666666
Q ss_pred CCCCEEe-ceEEeCCcccccccch-hhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEEeC-------CCccCCceee
Q 015296 314 SEGAIIE-DTLLMGADYYETDADR-RFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN-------SDSVQEAARE 384 (409)
Q Consensus 314 g~~~~I~-~s~i~~~~~~~~~~~~-~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~~-------~~~v~~~~~~ 384 (409)
+++|.|. +++|++++.+++++.. ...+.++ +.|+.++.+.+++|+++|.||.++++.+ +..+++++++
T Consensus 313 g~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~---~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~i 389 (446)
T PRK14353 313 GPYARLRPGAELGEGAKVGNFVEVKNAKLGEG---AKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFI 389 (446)
T ss_pred CCCeEEeccceecCCeEEcCceEEeceEECCC---CEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEE
Confidence 6666665 5566555555544331 1222222 2566777777888999999999988744 4567777888
Q ss_pred cCCeEEeCCeEEEcCCcEeCCCccC
Q 015296 385 TDGYFIKSGIVTIIKDALIPSGTII 409 (409)
Q Consensus 385 ~~g~~i~~g~v~i~~~~~Ip~gtvi 409 (409)
+.+++|..+ +.||++++|++|++|
T Consensus 390 g~~~~i~~~-~~Ig~~~~ig~~s~v 413 (446)
T PRK14353 390 GSNSALVAP-VTIGDGAYIASGSVI 413 (446)
T ss_pred CCCCEEeCC-CEECCCCEECCCCEE
Confidence 888888888 789999999988864
No 16
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=6.2e-34 Score=293.50 Aligned_cols=307 Identities=18% Similarity=0.172 Sum_probs=189.8
Q ss_pred eEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHHH----------
Q 015296 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYA---------- 159 (409)
Q Consensus 90 m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~~---------- 159 (409)
|++||||||.||||+| .+||+|+|++| +|||+|+++++.++|+++++++++++.+.+++++.+ |.
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~g-kpli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~-~~i~~~~~~~~~ 75 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAG-KPMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN-RDVNWVLQAEQL 75 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCC-ccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC-CCcEEEEcCCCC
Confidence 7899999999999997 68999999998 599999999999999999999999998888887753 11
Q ss_pred --------------------------------------HHHHHcCCCeEEEE-------------ecCC----cccCCC-
Q 015296 160 --------------------------------------KQLKAMKVDTTILG-------------LDDE----RAKEMP- 183 (409)
Q Consensus 160 --------------------------------------e~~~~~~~d~til~-------------~~~~----~~~ekp- 183 (409)
+.+.+ .+.+++. ++++ ++.|||
T Consensus 76 G~~~ai~~a~~~l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~g~v~~d~~g~v~~~~ek~~ 153 (451)
T TIGR01173 76 GTGHAVLQALPFLPDDGDVLVLYGDVPLISAETLERLLEAHRQ--NGITLLTAKLPDPTGYGRIIRENDGKVTAIVEDKD 153 (451)
T ss_pred chHHHHHHHHHhcCCCCcEEEEECCcCCcCHHHHHHHHHHHhh--CCEEEEEEecCCCCCCCEEEEcCCCCEEEEEEcCC
Confidence 11111 1222221 1221 123332
Q ss_pred --------cEEEEEEEEEeHHHHHHHHhhcCC---CCCcchhchHHHHHhCCCeEEEEEecCe--EEEcCCHHHHHHHHH
Q 015296 184 --------YIASMGIYVISKDVMLNLLRDKFP---GANDFGSEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANL 250 (409)
Q Consensus 184 --------~~~~~Giyif~~~vl~~ll~~~~~---~~~d~~~dli~~ll~~g~~V~a~~~~gy--w~DIgt~edy~~an~ 250 (409)
+..++|+|+|+++.|..+++.... ..+.+..++++.++++|.++.+|++++| |++++++++|..++.
T Consensus 154 ~~~~~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~ 233 (451)
T TIGR01173 154 ANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLER 233 (451)
T ss_pred CChHHhcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHH
Confidence 368899999999997666554322 1334568999999998889999999998 899999999988876
Q ss_pred hhccCCC------------CCCcccCCCCCccCCCcccCCceEecceEE-EEEECCCcEEcc-eEEeceEECCCCEECCC
Q 015296 251 GITKKPI------------PDFSFYDRSAPIYTQPRYLPPSKMLDADVT-DSVIGEGCVIKN-CKIHHSVVGLRSCISEG 316 (409)
Q Consensus 251 ~ll~~~~------------~~~~~~~~~~~i~~~~~~~~p~~i~~~~i~-~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~ 316 (409)
.+..+.. +....+.+...|..++.+.+. +.|. ++.||++|.|++ |.|++++||++|.|+++
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~~-----~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~ 308 (451)
T TIGR01173 234 ILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPN-----VILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAY 308 (451)
T ss_pred HHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEEcCC-----eEEeCceEECCCCEECCCcEEeeeEecCCCEEeee
Confidence 4443210 000011111111112222111 2222 244555555555 55555555555555555
Q ss_pred CEEeceEEeCCcccccccch--hhhccCCCc--------ce------EeCCCCEEcceEeCCCCEECCCcEEeC------
Q 015296 317 AIIEDTLLMGADYYETDADR--RFLAAKGSV--------PI------GIGKNSHIKRAIIDKNARIGDNVKIVN------ 374 (409)
Q Consensus 317 ~~I~~s~i~~~~~~~~~~~~--~~~~~~g~~--------~v------~Ig~~~~I~~~ii~~n~~IG~~~~i~~------ 374 (409)
|.|++++|+.++.++.++.. ...+++++. .. .|+..+.+.+|.|++|+.||.++.+.+
T Consensus 309 ~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~ 388 (451)
T TIGR01173 309 SVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANK 388 (451)
T ss_pred cEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccC
Confidence 55555444444444333221 111111110 00 233333334466677777777777765
Q ss_pred -CCccCCceeecCCeEEeCCeEEEcCCcEeCCCccC
Q 015296 375 -SDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 409 (409)
Q Consensus 375 -~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtvi 409 (409)
...+++++++|.++.|..| +.|+++++|++|++|
T Consensus 389 ~~~~Igd~~~ig~~~~i~~~-~~ig~~~~i~~g~~v 423 (451)
T TIGR01173 389 HKTIIGDGVFIGSNTQLVAP-VKVGDGATIAAGSTV 423 (451)
T ss_pred CCCEECCCcEECCCCEEECC-cEECCCCEEccCCEE
Confidence 2445666666666666667 789999999999875
No 17
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.5e-34 Score=296.52 Aligned_cols=313 Identities=18% Similarity=0.198 Sum_probs=195.0
Q ss_pred ccCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHH---HH---
Q 015296 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRA---YA--- 159 (409)
Q Consensus 86 ~~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~---~~--- 159 (409)
.|+.|++||||||+||||++ .+||+|+|++| +|||+|+++++.++|++++++++++..+++++++.+. |.
T Consensus 2 ~~~~~~aiIlAaG~gtRl~~---~~pK~l~~i~g-kpli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~i~~~ 77 (456)
T PRK09451 2 LNSAMSVVILAAGKGTRMYS---DLPKVLHTLAG-KPMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADEPLNWVLQA 77 (456)
T ss_pred CCCCceEEEEcCCCCCcCCC---CCChhcceeCC-hhHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccCCcEEEECC
Confidence 46679999999999999983 68999999998 5999999999999999999999999888888887531 10
Q ss_pred ----------------------------------HHHHH----c-CCCeEEEEe------------cCC----cccCCC-
Q 015296 160 ----------------------------------KQLKA----M-KVDTTILGL------------DDE----RAKEMP- 183 (409)
Q Consensus 160 ----------------------------------e~~~~----~-~~d~til~~------------~~~----~~~ekp- 183 (409)
+.+.+ . ..+..++.+ +++ ++.|||
T Consensus 78 ~~~Gt~~al~~a~~~l~~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~~~i~~~~~~~~~~yG~v~~~~g~V~~~~EKp~ 157 (456)
T PRK09451 78 EQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAKPQGGIGLLTVKLDNPTGYGRITRENGKVVGIVEQKD 157 (456)
T ss_pred CCCCcHHHHHHHHHhhccCCcEEEEeCCcccCCHHHHHHHHHHhhcCCEEEEEEEcCCCCCceEEEecCCeEEEEEECCC
Confidence 00000 0 111122221 111 234554
Q ss_pred --------cEEEEEEEEEeHHHHHHHHhhcCC---CCCcchhchHHHHHhCCCeEEEEE------ecCe--EEEcCCHHH
Q 015296 184 --------YIASMGIYVISKDVMLNLLRDKFP---GANDFGSEVIPGATSIGMRVQAYL------YDGY--WEDIGTIEA 244 (409)
Q Consensus 184 --------~~~~~Giyif~~~vl~~ll~~~~~---~~~d~~~dli~~ll~~g~~V~a~~------~~gy--w~DIgt~ed 244 (409)
.++++|+|+|+++.|.++++.... ..+.+++|+++.++++|+++.+|. +.|| |.|++++++
T Consensus 158 ~~~~~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~ 237 (456)
T PRK09451 158 ATDEQRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLER 237 (456)
T ss_pred CChHHhhccEEEEEEEEEEHHHHHHHHHhcCCccccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHH
Confidence 368999999999998776654332 244567899999999899999996 4676 788999999
Q ss_pred HHHHHHh--hccCCCCCCcccCCCCC-ccCCCcccCCceEe-cceEE-EEEECCCcEEcc-eEEeceEECCCCEECCCCE
Q 015296 245 FYNANLG--ITKKPIPDFSFYDRSAP-IYTQPRYLPPSKML-DADVT-DSVIGEGCVIKN-CKIHHSVVGLRSCISEGAI 318 (409)
Q Consensus 245 y~~an~~--ll~~~~~~~~~~~~~~~-i~~~~~~~~p~~i~-~~~i~-~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~ 318 (409)
|+++++. ++... ..++++... +.....+.+++.|. ++.|. +++||++|+|++ |.|++++||++|.|+++|.
T Consensus 238 y~~~~~~~~~l~~~---~~~~~p~~~~~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~ 314 (456)
T PRK09451 238 VYQAEQAEKLLLAG---VMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSV 314 (456)
T ss_pred HHHHHHHHHHHHcC---CEEeCCCEEEECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEE
Confidence 9998842 32221 001111000 00011111222222 22232 255555555555 5555555555555555555
Q ss_pred EeceEEeCCcccccccch-------------------hhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEEeCCC---
Q 015296 319 IEDTLLMGADYYETDADR-------------------RFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSD--- 376 (409)
Q Consensus 319 I~~s~i~~~~~~~~~~~~-------------------~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~~~~--- 376 (409)
|++++++.+++++.++.. ...+.+|. .++..+.+.+|.||++|.||+++.+.+.+
T Consensus 315 i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~---~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~ 391 (456)
T PRK09451 315 VEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGS---KAGHLTYLGDAEIGDNVNIGAGTITCNYDGAN 391 (456)
T ss_pred EeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceeeCCCC---ccCccccccccEECCCCEEcCCeEEecccCcc
Confidence 555555544444433321 12222222 23444444556778888888888776543
Q ss_pred ----ccCCceeecCCeEEeCCeEEEcCCcEeCCCccC
Q 015296 377 ----SVQEAARETDGYFIKSGIVTIIKDALIPSGTII 409 (409)
Q Consensus 377 ----~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtvi 409 (409)
.|++++.++.++.|..| +.|+++++|++|++|
T Consensus 392 ~~~~~Igd~~~ig~~~~i~~~-~~ig~~~~i~~gs~v 427 (456)
T PRK09451 392 KFKTIIGDDVFVGSDTQLVAP-VTVGKGATIGAGTTV 427 (456)
T ss_pred cCCCEECCCcEECCCCEEeCC-cEECCCCEECCCCEE
Confidence 35566666666666666 678888888888764
No 18
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=8.8e-34 Score=279.59 Aligned_cols=314 Identities=22% Similarity=0.237 Sum_probs=237.7
Q ss_pred ceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHH----HH-----
Q 015296 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRA----YA----- 159 (409)
Q Consensus 89 ~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~----~~----- 159 (409)
++.+||||||+||||+ ..+||-|+||+| +|||+|+|+.+...+.+++.++++|.++++++.+.+. |-
T Consensus 2 ~~~~vILAAGkGTRMk---S~lPKVLH~vaG-kpMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~~~v~~v~Q~eq 77 (460)
T COG1207 2 SLSAVILAAGKGTRMK---SDLPKVLHPVAG-KPMLEHVIDAARALGPDDIVVVVGHGAEQVREALAERDDVEFVLQEEQ 77 (460)
T ss_pred CceEEEEecCCCcccc---CCCcccchhccC-ccHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhccccCceEEEeccc
Confidence 5789999999999998 479999999998 5999999999999999999999999999999888742 11
Q ss_pred -----------------------------------------HHHHHcCCCeEEEEecCC---------------------
Q 015296 160 -----------------------------------------KQLKAMKVDTTILGLDDE--------------------- 177 (409)
Q Consensus 160 -----------------------------------------e~~~~~~~d~til~~~~~--------------------- 177 (409)
+.+.+.+.+.++|.+.-.
T Consensus 78 lGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~g~V~~IVE 157 (460)
T COG1207 78 LGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVE 157 (460)
T ss_pred CChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCCCcEEEEEE
Confidence 112222455666653211
Q ss_pred --cc---cCCCcEEEEEEEEEeHHHHHHHHhhcC---CCCCcchhchHHHHHhCCCeEEEEEecCeEE--EcCCHHHHHH
Q 015296 178 --RA---KEMPYIASMGIYVISKDVMLNLLRDKF---PGANDFGSEVIPGATSIGMRVQAYLYDGYWE--DIGTIEAFYN 247 (409)
Q Consensus 178 --~~---~ekp~~~~~Giyif~~~vl~~ll~~~~---~~~~d~~~dli~~ll~~g~~V~a~~~~gyw~--DIgt~edy~~ 247 (409)
+. ..+-...|+|+|+|+.+.|.++|.... ...+.|++|++..+..+|.+|.++..+++++ -+++...+.+
T Consensus 158 ~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~ 237 (460)
T COG1207 158 EKDASEEEKQIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAE 237 (460)
T ss_pred cCCCCHHHhcCcEEeeeEEEEcHHHHHHHHHHhccccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHH
Confidence 11 112368999999999998888876543 3567899999999999999999999998764 5677777777
Q ss_pred HHHhhccCC------------CCCCcccCCCCCccCCCcccCCc------------eEe-cceEEEEEECCCcEEcc-eE
Q 015296 248 ANLGITKKP------------IPDFSFYDRSAPIYTQPRYLPPS------------KML-DADVTDSVIGEGCVIKN-CK 301 (409)
Q Consensus 248 an~~ll~~~------------~~~~~~~~~~~~i~~~~~~~~p~------------~i~-~~~i~~~~Ig~g~~I~~-~~ 301 (409)
+++.|..+. .|.-.+++.+..|.....+.|.+ .|+ ++.|+||.|++||.|.. +.
T Consensus 238 ~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ 317 (460)
T COG1207 238 AERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSV 317 (460)
T ss_pred HHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecce
Confidence 776665443 12222333344444444444532 333 35566777777777777 77
Q ss_pred EeceEECCCCEECCCCEEec-eEEeCCcccccccc-hhhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEEeCCCccC
Q 015296 302 IHHSVVGLRSCISEGAIIED-TLLMGADYYETDAD-RRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQ 379 (409)
Q Consensus 302 I~~svIg~~~~Ig~~~~I~~-s~i~~~~~~~~~~~-~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~~~~~v~ 379 (409)
|++|.||++|.||++++|++ +.+..+++++++.| +.+.+++|. ..++-++|.+|.||+++.||++++..|-++.-
T Consensus 318 ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~gs---Ka~HLtYlGDA~iG~~~NiGAGtItcNYDG~n 394 (460)
T COG1207 318 IEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGS---KAGHLTYLGDAEIGENVNIGAGTITCNYDGKN 394 (460)
T ss_pred eeccEecCCcccCCccccCCcCcccCCCeEeeeEEEecccccCCc---cccceeeeccceecCCceeccceEEEcCCCcc
Confidence 77778888888888888865 45555678888877 677787776 78888899999999999999999999999875
Q ss_pred Cc-eeecCCeEEeCC-----eEEEcCCcEeCCCccC
Q 015296 380 EA-ARETDGYFIKSG-----IVTIIKDALIPSGTII 409 (409)
Q Consensus 380 ~~-~~~~~g~~i~~g-----~v~i~~~~~Ip~gtvi 409 (409)
.. ..+|+++||+++ .|.||+++.|++||+|
T Consensus 395 K~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStI 430 (460)
T COG1207 395 KFKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 430 (460)
T ss_pred cceeeecCCcEEccCCcEEeeEEecCCcEEcccceE
Confidence 54 788999999998 3469999999999986
No 19
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.1e-32 Score=284.99 Aligned_cols=314 Identities=18% Similarity=0.181 Sum_probs=199.3
Q ss_pred CceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHH-HH-------
Q 015296 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRA-YA------- 159 (409)
Q Consensus 88 ~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~-~~------- 159 (409)
.+++|||||||+||||+ ..+||+|+|++| +|||+|++++|...++++|++++++..+.+++++.+. +.
T Consensus 4 ~~~~aiILAaG~gtR~~---~~~pK~l~~i~g-kpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~~~~~v~~~~~ 79 (456)
T PRK14356 4 STTGALILAAGKGTRMH---SDKPKVLQTLLG-EPMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPDEDARFVLQEQQ 79 (456)
T ss_pred cceeEEEEcCCCCccCC---CCCCceecccCC-CcHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhccccCceEEEcCCC
Confidence 35889999999999997 468999999998 5999999999999999999999999888877766420 00
Q ss_pred -----------HHHHH----------------------------cCCCeEEEEec-------------CC---cccCC--
Q 015296 160 -----------KQLKA----------------------------MKVDTTILGLD-------------DE---RAKEM-- 182 (409)
Q Consensus 160 -----------e~~~~----------------------------~~~d~til~~~-------------~~---~~~ek-- 182 (409)
+++.. .+.+.+++... +. .+.|+
T Consensus 80 ~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~l~~~~~~~~~~~g~v~~~~g~V~~~~ek~~ 159 (456)
T PRK14356 80 LGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAAGADLAFMTLTLPDPGAYGRVVRRNGHVAAIVEAKD 159 (456)
T ss_pred CCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHhcCCEEEEEEEcCCCCCceEEEEcCCeEEEEEECCC
Confidence 11110 12233333211 11 12222
Q ss_pred ---------CcEEEEEEEEEeHHHHHHHHhhcC---CCCCcchhchHHHHHhCCCeEEEEEecC--eEEEcCCHHHHHHH
Q 015296 183 ---------PYIASMGIYVISKDVMLNLLRDKF---PGANDFGSEVIPGATSIGMRVQAYLYDG--YWEDIGTIEAFYNA 248 (409)
Q Consensus 183 ---------p~~~~~Giyif~~~vl~~ll~~~~---~~~~d~~~dli~~ll~~g~~V~a~~~~g--yw~DIgt~edy~~a 248 (409)
+.++++|+|+|+++.|..+++... ...+.+++++++.+++.|.++.++.+++ +|.|++|+++|..+
T Consensus 160 ~~~~~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a 239 (456)
T PRK14356 160 YDEALHGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRS 239 (456)
T ss_pred CChHHhhhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHH
Confidence 246789999999999877765432 2234566899999998888999999966 57999999999998
Q ss_pred HHhhccCCCC-----CCcccCC-CCCccCCCcccCCceEe-cceE-EEEEECCCcEEcc-eEEeceEECCCCEECCCCEE
Q 015296 249 NLGITKKPIP-----DFSFYDR-SAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAII 319 (409)
Q Consensus 249 n~~ll~~~~~-----~~~~~~~-~~~i~~~~~~~~p~~i~-~~~i-~~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I 319 (409)
+..+..+... +..+.++ ...+.+.+.+.+.+.+. .+.+ .++.||++|.|++ |.|++++||++|+|+++|.|
T Consensus 240 ~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i 319 (456)
T PRK14356 240 EELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHL 319 (456)
T ss_pred HHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEE
Confidence 8766543211 0111111 11122223333333333 2222 2366666666666 66666666666666666666
Q ss_pred eceEEeCCcccccccch--hhhccCCCcceEeCCCC-----------------EEcceEeCCCCEECCCcEEeC------
Q 015296 320 EDTLLMGADYYETDADR--RFLAAKGSVPIGIGKNS-----------------HIKRAIIDKNARIGDNVKIVN------ 374 (409)
Q Consensus 320 ~~s~i~~~~~~~~~~~~--~~~~~~g~~~v~Ig~~~-----------------~I~~~ii~~n~~IG~~~~i~~------ 374 (409)
++++|++++.++.++.. ...+++++ .||+++ ++.+++|++++.||.++.+.+
T Consensus 320 ~~~~ig~~~~Ig~~~~i~~~~~ig~~~---~ig~~~~i~~~~i~~~~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~ 396 (456)
T PRK14356 320 EGAEVGDGCSVGPYARLRPGAVLEEGA---RVGNFVEMKKAVLGKGAKANHLTYLGDAEIGAGANIGAGTITCNYDGVNK 396 (456)
T ss_pred cccceecccEECCceEECCCCEECCCC---EecCCceeeeeEecCCcEecccccccCeEECCCCEECCCceeeccccccC
Confidence 66666666555554332 12233332 333333 333455666666666655433
Q ss_pred -CCccCCceeecCCeEEeCCeEEEcCCcEeCCCccC
Q 015296 375 -SDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 409 (409)
Q Consensus 375 -~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtvi 409 (409)
.+.+++.++++.++.|..+ +.|++++.|++|++|
T Consensus 397 ~~~~igd~~~ig~~~~i~~~-~~ig~~~~i~~~~~v 431 (456)
T PRK14356 397 HRTVIGEGAFIGSNTALVAP-VTIGDGALVGAGSVI 431 (456)
T ss_pred CCCEECCCcEEcCCCEEeCC-cEECCCCEEcCCCEE
Confidence 2445666667777777777 678999999998864
No 20
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.4e-33 Score=290.94 Aligned_cols=317 Identities=16% Similarity=0.158 Sum_probs=196.2
Q ss_pred CceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHH--------H-
Q 015296 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRA--------Y- 158 (409)
Q Consensus 88 ~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~--------~- 158 (409)
++|+|||||||+||||++ .+||+|+|++| +|||+|+|++|.++|+++|+|+++++.+++++|+... +
T Consensus 6 ~~~~avILAaG~gtRl~~---~~pK~llpi~g-kpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~~i~~v~~~~~ 81 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKS---ALPKVLHPVAG-RPMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQGSGVAFARQEQQ 81 (481)
T ss_pred CCceEEEECCCCCCcCCC---CCCceecEECC-eeHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhccCCcEEecCCCc
Confidence 368999999999999996 48999999998 4999999999999999999999999988888887420 0
Q ss_pred -------H--------------------------------HHHHHcCCCeEEEE-------------ecCC----cccCC
Q 015296 159 -------A--------------------------------KQLKAMKVDTTILG-------------LDDE----RAKEM 182 (409)
Q Consensus 159 -------~--------------------------------e~~~~~~~d~til~-------------~~~~----~~~ek 182 (409)
. +.|++.+.+.+++. ++++ ++.||
T Consensus 82 ~Gt~~al~~~~~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~yG~v~~d~~g~v~~~~Ek 161 (481)
T PRK14358 82 LGTGDAFLSGASALTEGDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPDATGYGRIVRGADGAVERIVEQ 161 (481)
T ss_pred CCcHHHHHHHHHHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCceEEEECCCCCEEEEEEC
Confidence 0 12222233344332 2211 23454
Q ss_pred C---------cEEEEEEEEEeHHHHH--HHHhhcCCCCCcchhchHHHHHhCCCeEEEEEecCeEEEcCCHHHHHHHHHh
Q 015296 183 P---------YIASMGIYVISKDVML--NLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLG 251 (409)
Q Consensus 183 p---------~~~~~Giyif~~~vl~--~ll~~~~~~~~d~~~dli~~ll~~g~~V~a~~~~gyw~DIgt~edy~~an~~ 251 (409)
| .++++|+|+|++++++ +.++......+.+++|+++.++++|.++.+|++.++|..++...+|+.+++.
T Consensus 162 ~~~~~~~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~ 241 (481)
T PRK14358 162 KDATDAEKAIGEFNSGVYVFDARAPELARRIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLE 241 (481)
T ss_pred CCCChhHhhCCeEEEEEEEEchHHHHHHHhcCCCccCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHH
Confidence 4 2579999999966532 1222111222455689999999988899999999999999988888776654
Q ss_pred -hccCCCC------CCcccCCCCC-ccCCCcccCCceEe-cceEE-EEEECCCcEEcc-eEEeceEECCCCEECCCCEEe
Q 015296 252 -ITKKPIP------DFSFYDRSAP-IYTQPRYLPPSKML-DADVT-DSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIE 320 (409)
Q Consensus 252 -ll~~~~~------~~~~~~~~~~-i~~~~~~~~p~~i~-~~~i~-~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~ 320 (409)
++.+... +-...++.+. +.+...+...+.|. ++.|. ++.||++|.|+. |.|++|+||++|.|+++++|.
T Consensus 242 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~ 321 (481)
T PRK14358 242 ATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLE 321 (481)
T ss_pred HHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceec
Confidence 3332210 0001111110 00111111112222 22222 255666666666 666666677777776666666
Q ss_pred ceEEeCCcccccccch--hhhccCCCc--------------ceEeCCCCEEcceEeCCCCEECCCcEEeCC-------Cc
Q 015296 321 DTLLMGADYYETDADR--RFLAAKGSV--------------PIGIGKNSHIKRAIIDKNARIGDNVKIVNS-------DS 377 (409)
Q Consensus 321 ~s~i~~~~~~~~~~~~--~~~~~~g~~--------------~v~Ig~~~~I~~~ii~~n~~IG~~~~i~~~-------~~ 377 (409)
+++++++++++.+... ...+++++. -+.+|+.+.+.+++|++||.||.++++.+. +.
T Consensus 322 ~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~ 401 (481)
T PRK14358 322 GAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSK 401 (481)
T ss_pred CCeEeCceEECCccEEcCCcEECCCCEECCCEEECCceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCE
Confidence 6666666555544321 122222220 012333344456788888888888888764 34
Q ss_pred cCCceeecCCeEEeCCeEEEcCCcEeCCCccC
Q 015296 378 VQEAARETDGYFIKSGIVTIIKDALIPSGTII 409 (409)
Q Consensus 378 v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtvi 409 (409)
+++++.++.++.|.++ ++|+++++|++|+++
T Consensus 402 Ig~~~~ig~~~~i~~~-~~Ig~~~~i~~gs~v 432 (481)
T PRK14358 402 VGAGVFIGSNTTLIAP-RVVGDAAFIAAGSAV 432 (481)
T ss_pred ECCCeEEcCCCEEcCC-cEECCCCEECCCCEE
Confidence 5555555555555555 568888888888764
No 21
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.6e-32 Score=281.31 Aligned_cols=314 Identities=19% Similarity=0.218 Sum_probs=202.4
Q ss_pred CceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHHH--------
Q 015296 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYA-------- 159 (409)
Q Consensus 88 ~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~~-------- 159 (409)
+.++|||||||.||||++ .+||+|+|++|+ |||+|+|+++.++|+++++++++++.+++++|+.+...
T Consensus 1 m~~~avIlAaG~g~Rl~~---~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~~~~~~~~~~~~ 76 (458)
T PRK14354 1 MNRYAIILAAGKGTRMKS---KLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGDRSEFALQEEQL 76 (458)
T ss_pred CCceEEEEeCCCCcccCC---CCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcCCcEEEEcCCCC
Confidence 357899999999999984 689999999985 99999999999999999999999999888888753110
Q ss_pred ---------------------------------------HHHHHcCCCeEEEE-------------ecCC----cccCCC
Q 015296 160 ---------------------------------------KQLKAMKVDTTILG-------------LDDE----RAKEMP 183 (409)
Q Consensus 160 ---------------------------------------e~~~~~~~d~til~-------------~~~~----~~~ekp 183 (409)
+.+++.+.+.+++. .+++ ++.++|
T Consensus 77 g~~~al~~a~~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~~~~~~g~v~~d~~~~V~~~~ek~ 156 (458)
T PRK14354 77 GTGHAVMQAEEFLADKEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAENPTGYGRIIRNENGEVEKIVEQK 156 (458)
T ss_pred CHHHHHHHHHHHhcccCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcCCCCCceEEEEcCCCCEEEEEECC
Confidence 12222233333321 1221 122332
Q ss_pred ---------cEEEEEEEEEeHHHHHHHHhhcCC---CCCcchhchHHHHHhCCCeEEEEEecCeE--EEcCCHHHHHHHH
Q 015296 184 ---------YIASMGIYVISKDVMLNLLRDKFP---GANDFGSEVIPGATSIGMRVQAYLYDGYW--EDIGTIEAFYNAN 249 (409)
Q Consensus 184 ---------~~~~~Giyif~~~vl~~ll~~~~~---~~~d~~~dli~~ll~~g~~V~a~~~~gyw--~DIgt~edy~~an 249 (409)
+..++|+|+|+++.|...++.... ..+.+..|+++.+++.+.++.+|.++|+| +++++++||..|+
T Consensus 157 ~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~ 236 (458)
T PRK14354 157 DATEEEKQIKEINTGTYCFDNKALFEALKKISNDNAQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAE 236 (458)
T ss_pred CCChHHhcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHH
Confidence 478999999999866555543322 12344679999999888899999999765 5777999998887
Q ss_pred HhhccCCC-----CCCc-------ccCCCCCccCCCcccCCceE------------e-cceEEEEEECCCcEEcceEEec
Q 015296 250 LGITKKPI-----PDFS-------FYDRSAPIYTQPRYLPPSKM------------L-DADVTDSVIGEGCVIKNCKIHH 304 (409)
Q Consensus 250 ~~ll~~~~-----~~~~-------~~~~~~~i~~~~~~~~p~~i------------~-~~~i~~~~Ig~g~~I~~~~I~~ 304 (409)
..+..+.. +... ++.+.+.|.....+.+.+.+ . ++.|.+++||++|.|+++.+.+
T Consensus 237 ~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~ 316 (458)
T PRK14354 237 KVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEE 316 (458)
T ss_pred HHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeC
Confidence 54321110 1112 22222333333333332222 1 2334455666666666555556
Q ss_pred eEECCCCEECCCCEEe-ceEEeCCcccccccch-hhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEEeCC-------
Q 015296 305 SVVGLRSCISEGAIIE-DTLLMGADYYETDADR-RFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNS------- 375 (409)
Q Consensus 305 svIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~-~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~~~------- 375 (409)
++||.+|.|+++|.|. +++|++++.++.++.. ...+.++. .|+..+.+.+++|++|+.||.++.+.+.
T Consensus 317 ~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~---~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~ 393 (458)
T PRK14354 317 SKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGT---KVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFK 393 (458)
T ss_pred CEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCC---EecceeeecCcccCCceEEcCceeecccccccccC
Confidence 6777777777777776 5666666555554432 22223332 3444555566777788888888777663
Q ss_pred CccCCceeecCCeEEeCCeEEEcCCcEeCCCccC
Q 015296 376 DSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 409 (409)
Q Consensus 376 ~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtvi 409 (409)
..+++.++++.++.|..| +.|++++.|++|++|
T Consensus 394 ~~igd~~~ig~~s~i~~~-~~ig~~~~v~~~~~v 426 (458)
T PRK14354 394 TIIGDNAFIGCNSNLVAP-VTVGDNAYIAAGSTI 426 (458)
T ss_pred CEECCCcEEccCCEEeCC-cEECCCCEECCCCEE
Confidence 344566666666777777 678999999988875
No 22
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.98 E-value=1.1e-30 Score=269.52 Aligned_cols=303 Identities=18% Similarity=0.194 Sum_probs=181.3
Q ss_pred eEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHHH----------
Q 015296 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYA---------- 159 (409)
Q Consensus 90 m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~~---------- 159 (409)
|+|||||||.||||++ .+||+|+|++|+ |||+|+|+++.+.+ ++|+|++++..+.+.+|+.+.+.
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~g~ 75 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPEWVKIFLQEEQLGT 75 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhcccccEEEecCCCCCh
Confidence 7899999999999984 689999999985 99999999999975 89999999998888888764211
Q ss_pred ------------------------------------HHHHHcCCCeEEEEe-------------cCC--cccCCC-----
Q 015296 160 ------------------------------------KQLKAMKVDTTILGL-------------DDE--RAKEMP----- 183 (409)
Q Consensus 160 ------------------------------------e~~~~~~~d~til~~-------------~~~--~~~ekp----- 183 (409)
+.|++.+.|.+++.. ++. .+.++|
T Consensus 76 ~~ai~~a~~~l~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~~~~~~g~v~~d~g~v~~~e~~~~~~~ 155 (448)
T PRK14357 76 AHAVMCARDFIEPGDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLEDPTGYGRIIRDGGKYRIVEDKDAPEE 155 (448)
T ss_pred HHHHHHHHHhcCcCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCcEEEEEcCCeEEEEECCCCChH
Confidence 222233445554432 111 112221
Q ss_pred ----cEEEEEEEEEeHHHHHHHHhhcCC---CCCcchhchHHHHHhCCCeEEEEEecCe--EEEcCCHHHHHHHHHhhcc
Q 015296 184 ----YIASMGIYVISKDVMLNLLRDKFP---GANDFGSEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITK 254 (409)
Q Consensus 184 ----~~~~~Giyif~~~vl~~ll~~~~~---~~~d~~~dli~~ll~~g~~V~a~~~~gy--w~DIgt~edy~~an~~ll~ 254 (409)
++.++|+|+|++++|.++++.... ..+.+..|+++.+ .++.+|.+.+| |.+++++++|..+...+..
T Consensus 156 ~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~~d~i~~~----~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~ 231 (448)
T PRK14357 156 EKKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYLTDAVNFA----EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRM 231 (448)
T ss_pred HhcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEHHHHHHhh----hheeEEecCCHHHEEccCCHHHHHHHHHHHHH
Confidence 378999999999998776554322 1233456888776 24888999998 5667799999876654421
Q ss_pred CC-----CCCCc-------ccCCCCCccCCCcccCCceEecceEEEEEECCCcEEcc-eEEeceEECCCCEE--------
Q 015296 255 KP-----IPDFS-------FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCI-------- 313 (409)
Q Consensus 255 ~~-----~~~~~-------~~~~~~~i~~~~~~~~p~~i~~~~i~~~~Ig~g~~I~~-~~I~~svIg~~~~I-------- 313 (409)
.. .++.. ++++.+.|..++.+.|++.+. .++.||++|+|++ |.|.+|+||++|.|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~~~~~I~----~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~s 307 (448)
T PRK14357 232 RILEELMENGVTILDPNTTYIHYDVEIGMDTIIYPMTFIE----GKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKS 307 (448)
T ss_pred HHHHHHHHcCCEEeCCCcEEEccceEECCCcEEcCCcEEE----eeeEECCCcEECCCceecccEECCCCEEeeeEEEEE
Confidence 10 01111 333344444444444444433 2355555555555 55555555555544
Q ss_pred --------CCCCEEec-eEEeCCcccccccch-hhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEEeCC-------C
Q 015296 314 --------SEGAIIED-TLLMGADYYETDADR-RFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNS-------D 376 (409)
Q Consensus 314 --------g~~~~I~~-s~i~~~~~~~~~~~~-~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~~~-------~ 376 (409)
++++.|.. ++|++++.++.+++. ...+.++. .+++.+.+.+++||+||.||+++.+.+. +
T Consensus 308 ii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~~---~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~ 384 (448)
T PRK14357 308 VIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENT---KAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPT 384 (448)
T ss_pred EEeCCcEECCCcEECCcccccCCcEecCceeeeccEEcCCc---CccccccccCcEECCCcEECCCcccccccccccCCc
Confidence 44444422 333333333332221 11111111 1222333345667777777777766543 3
Q ss_pred ccCCceeecCCeEEeCCeEEEcCCcEeCCCccC
Q 015296 377 SVQEAARETDGYFIKSGIVTIIKDALIPSGTII 409 (409)
Q Consensus 377 ~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtvi 409 (409)
.+++.+.++.++.|..| +.|++++.|++|++|
T Consensus 385 ~Igd~~~ig~~~~i~~g-v~Ig~~~~i~ag~~v 416 (448)
T PRK14357 385 FIEDGAFIGSNSSLVAP-VRIGKGALIGAGSVI 416 (448)
T ss_pred EECCCCEECCCCEEeCC-cEECCCCEEcCCCEE
Confidence 44555555555566666 678888888888765
No 23
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.3e-30 Score=266.08 Aligned_cols=287 Identities=21% Similarity=0.381 Sum_probs=216.6
Q ss_pred CceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHH-HHH-------
Q 015296 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSR-AYA------- 159 (409)
Q Consensus 88 ~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~-~~~------- 159 (409)
+.++||+||.-+-|||+|+|..+|+.|+|++ |.|||+|+|++|..+|+++++|+++.++.++.+|+.. .|.
T Consensus 23 ~rLqAIllaDsf~trF~Plt~~~p~~LLPla-NVpmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~v 101 (673)
T KOG1461|consen 23 HRLQAILLADSFETRFRPLTLEKPRVLLPLA-NVPMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFIV 101 (673)
T ss_pred cceEEEEEeccchhcccccccCCCceEeeec-CchHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhccccccccceE
Confidence 4589999999999999999999999999999 6999999999999999999999999999999999997 454
Q ss_pred ---------------------------------------------HHHHHcC-----CCeEEE---------------Ee
Q 015296 160 ---------------------------------------------KQLKAMK-----VDTTIL---------------GL 174 (409)
Q Consensus 160 ---------------------------------------------e~~~~~~-----~d~til---------------~~ 174 (409)
++|++.. .-+|++ .+
T Consensus 102 ~ti~s~~~~S~GDamR~id~k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st~~~~~~~~~av 181 (673)
T KOG1461|consen 102 VTICSGESRSVGDAMRDIDEKQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESSTRETTEQVVIAV 181 (673)
T ss_pred EEEcCCCcCcHHHHHHHHHhcceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEeccccccCCcceEEEE
Confidence 4443321 112211 11
Q ss_pred cC--------------C-cc-------cC------CCcEEEEEEEEEeHHHHHHHHhhcCC--CCCcchhchHHHHHhCC
Q 015296 175 DD--------------E-RA-------KE------MPYIASMGIYVISKDVMLNLLRDKFP--GANDFGSEVIPGATSIG 224 (409)
Q Consensus 175 ~~--------------~-~~-------~e------kp~~~~~Giyif~~~vl~~ll~~~~~--~~~d~~~dli~~ll~~g 224 (409)
+. + .+ .. ..++.+++|-+++++++. |..+.|. ...||.+.++-.=+- |
T Consensus 182 d~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~s-LF~dNFDyq~r~DfV~GvL~~dil-g 259 (673)
T KOG1461|consen 182 DSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLS-LFTDNFDYQTRDDFVRGVLVDDIL-G 259 (673)
T ss_pred cCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHH-Hhhhcccceehhhhhhhhhhhhhc-C
Confidence 11 0 00 00 115778999999999987 5555553 223444444432233 8
Q ss_pred CeEEEEEecC--eEEEcCCHHHHHHHHHhhccCCC----CCCcccCCCCCccCCCc-ccCCceEe--cceE-EEEEECCC
Q 015296 225 MRVQAYLYDG--YWEDIGTIEAFYNANLGITKKPI----PDFSFYDRSAPIYTQPR-YLPPSKML--DADV-TDSVIGEG 294 (409)
Q Consensus 225 ~~V~a~~~~g--yw~DIgt~edy~~an~~ll~~~~----~~~~~~~~~~~i~~~~~-~~~p~~i~--~~~i-~~~~Ig~g 294 (409)
++|+++..+. |-..+.++..|....++++.++. |+.+|.+....-+.... +..|.... .+.+ .+++||.|
T Consensus 260 ~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~g 339 (673)
T KOG1461|consen 260 YKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYKSPDVVLSHSVIVGANVVIGAG 339 (673)
T ss_pred CeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeecccccccCccceehhhccccceEEeccc
Confidence 8999999876 88999999999999999999873 23344442211111111 22332222 2344 46899999
Q ss_pred cEEcc-eEEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEEe
Q 015296 295 CVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIV 373 (409)
Q Consensus 295 ~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~ 373 (409)
+.||. +.|.||+||.+|+||.+|+|+++.||.+ +.||+||.|++|+|+++|.|+++|.+.
T Consensus 340 T~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~-------------------v~Igdnc~I~~aii~d~v~i~~~~~l~ 400 (673)
T KOG1461|consen 340 TKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNN-------------------VTIGDNCRIDHAIICDDVKIGEGAILK 400 (673)
T ss_pred ccccCCCeeecceecCCCEecCceEEeeeeeecC-------------------cEECCCceEeeeEeecCcEeCCCcccC
Confidence 99999 9999999999999999999999999998 579999999999999999999999886
Q ss_pred CCCccCCceeecCCeEEeCCeEEEcCCcEeCCCccC
Q 015296 374 NSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 409 (409)
Q Consensus 374 ~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtvi 409 (409)
. |++++.| |+++++-++|.+++|
T Consensus 401 ~------------g~vl~~~-VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 401 P------------GSVLGFG-VVVGRNFVLPKNSKV 423 (673)
T ss_pred C------------CcEEeee-eEeCCCccccccccc
Confidence 4 4777888 888888888888664
No 24
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.97 E-value=1.4e-29 Score=261.50 Aligned_cols=308 Identities=16% Similarity=0.221 Sum_probs=208.3
Q ss_pred eEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHH--HH--------
Q 015296 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRA--YA-------- 159 (409)
Q Consensus 90 m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~--~~-------- 159 (409)
|.+||||||.|+||++ .+||+|+|++|+ |||+|+|++|.++|++++++++++..+.+++++.+. ..
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~~i~~v~~~~~~ 77 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHLPGLEFVEQQPQL 77 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcccCCeEEEEeCCcC
Confidence 6799999999999985 689999999985 999999999999999999999999888888776431 00
Q ss_pred ---------------------------------------HHHHHcCCCeEEEE-------------ecCC----cccCCC
Q 015296 160 ---------------------------------------KQLKAMKVDTTILG-------------LDDE----RAKEMP 183 (409)
Q Consensus 160 ---------------------------------------e~~~~~~~d~til~-------------~~~~----~~~ekp 183 (409)
+.++..+.+.+++. ++++ ++.|+|
T Consensus 78 G~~~sv~~~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~v~~~~ek~ 157 (450)
T PRK14360 78 GTGHAVQQLLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLPNPKGYGRVFCDGNNLVEQIVEDR 157 (450)
T ss_pred CcHHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecCCCCCccEEEECCCCCEEEEEECC
Confidence 11222223333321 1111 122332
Q ss_pred ---------cEEEEEEEEEeHHHHHHHHhhcCC---CCCcchhchHHHHHhCCCeEEEEEecCeE--EEcCCHHHHHHHH
Q 015296 184 ---------YIASMGIYVISKDVMLNLLRDKFP---GANDFGSEVIPGATSIGMRVQAYLYDGYW--EDIGTIEAFYNAN 249 (409)
Q Consensus 184 ---------~~~~~Giyif~~~vl~~ll~~~~~---~~~d~~~dli~~ll~~g~~V~a~~~~gyw--~DIgt~edy~~an 249 (409)
.++++|+|+|+++.|.++++...+ ..+.+.+|.++.+.. +..+.+.++| ..+++++++..+.
T Consensus 158 ~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~td~i~~~~~----~~~~~v~~~~~~~~i~~~~dl~~~~ 233 (450)
T PRK14360 158 DCTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYLTDTVSLLDP----VMAVEVEDYQEINGINDRKQLAQCE 233 (450)
T ss_pred CCChhHhcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeHHHHHHHHhh----ceEEecCCHHHhhcCCCHHHHHHHH
Confidence 578999999999998877765432 133456788877643 5566677765 4599999998776
Q ss_pred HhhccCC-----CCCCcccCCC-------------C------CccCCCcccCCceEe-cceEEEEEECCCcEEcceEEec
Q 015296 250 LGITKKP-----IPDFSFYDRS-------------A------PIYTQPRYLPPSKML-DADVTDSVIGEGCVIKNCKIHH 304 (409)
Q Consensus 250 ~~ll~~~-----~~~~~~~~~~-------------~------~i~~~~~~~~p~~i~-~~~i~~~~Ig~g~~I~~~~I~~ 304 (409)
..+.... .++..++++. . .+.+...+.+++.+. ++.|.+++|+++|.|+.+.+.+
T Consensus 234 ~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~ 313 (450)
T PRK14360 234 EILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSD 313 (450)
T ss_pred HHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEee
Confidence 5432211 0111122221 1 222222233333443 4556677778888886577778
Q ss_pred eEECCCCEECCCCEEe-ceEEeCCcccccccc-hhhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEEeC-------C
Q 015296 305 SVVGLRSCISEGAIIE-DTLLMGADYYETDAD-RRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN-------S 375 (409)
Q Consensus 305 svIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~-~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~~-------~ 375 (409)
++||++|.|+++|.|. +++|++++.++..+. ....+.++. .|++++++.+++|+++|.||.++.+.+ .
T Consensus 314 ~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~---~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~ 390 (450)
T PRK14360 314 SQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGS---KVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHR 390 (450)
T ss_pred ccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCc---EeccceecCCceecCCcEECccceeccccccccCC
Confidence 8888899999999996 578877777766554 233444443 456666666788999999999988865 4
Q ss_pred CccCCceeecCCeEEeCCeEEEcCCcEeCCCccC
Q 015296 376 DSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 409 (409)
Q Consensus 376 ~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtvi 409 (409)
..+++++++|.++.|.+| +.|+++++|++|+++
T Consensus 391 ~~Ig~~~~iG~~~~i~~~-~~ig~~~~v~~~~~v 423 (450)
T PRK14360 391 TVIGDRSKTGANSVLVAP-ITLGEDVTVAAGSTI 423 (450)
T ss_pred cEeCCCeEeCCCCEEeCC-cEECCCCEECCCCEE
Confidence 556777777777777777 788999999888864
No 25
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.5e-30 Score=242.71 Aligned_cols=255 Identities=19% Similarity=0.341 Sum_probs=196.2
Q ss_pred ceEEEEEcCC--CCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhC-CCceEEEEcccChhhHHHHHHHH---HH---
Q 015296 89 SVLGIILGGG--AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRA---YA--- 159 (409)
Q Consensus 89 ~m~aIILAaG--~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~-Gi~~I~Vv~~~~~~~i~~~l~~~---~~--- 159 (409)
+++||||-|| +||||+||+.+.||||+||+| .|||+|.|+.|.+. |..+|+++--|.++.+.+|+... |+
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG-~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pv 80 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAG-VPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPV 80 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCccccCC-cchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccch
Confidence 5789999999 999999999999999999998 59999999999986 89999999888888887777652 11
Q ss_pred -----------------------------------------------HHHHHcCCCeEEEEecC-------------C--
Q 015296 160 -----------------------------------------------KQLKAMKVDTTILGLDD-------------E-- 177 (409)
Q Consensus 160 -----------------------------------------------e~~~~~~~d~til~~~~-------------~-- 177 (409)
+.|+..+.-.+++.... +
T Consensus 81 rYL~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~ 160 (407)
T KOG1460|consen 81 RYLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPS 160 (407)
T ss_pred hhhccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCC
Confidence 44455555555554321 1
Q ss_pred -----cccCCC-----cEEEEEEEEEeHHHHHHHHh---h---------cC----CCCCcc---hhchHHHHHhCCCeEE
Q 015296 178 -----RAKEMP-----YIASMGIYVISKDVMLNLLR---D---------KF----PGANDF---GSEVIPGATSIGMRVQ 228 (409)
Q Consensus 178 -----~~~ekp-----~~~~~Giyif~~~vl~~ll~---~---------~~----~~~~d~---~~dli~~ll~~g~~V~ 228 (409)
...+|| +.+|+|+|+|++++|+.+-+ . .+ ++..|| ..|+++.|+.+ ++++
T Consensus 161 t~evlHYveKPsTfvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~-k~lY 239 (407)
T KOG1460|consen 161 TGEVLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGS-KQLY 239 (407)
T ss_pred cCceEEeecCcchhhhcccceeEEEecHHHHHHHHHHHHHHHhhhhhhhcccccCCCccceEEeechhhhhhcCC-CceE
Confidence 124676 68899999999999986522 1 01 122344 46899999885 5899
Q ss_pred EEEecCeEEEcCCHHHHHHHHHhhccCCCCCCcccCCCCCccCCCcccCCceEecceEEEEEECCCcEEcc-eEEe-ceE
Q 015296 229 AYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSV 306 (409)
Q Consensus 229 a~~~~gyw~DIgt~edy~~an~~ll~~~~~~~~~~~~~~~i~~~~~~~~p~~i~~~~i~~~~Ig~g~~I~~-~~I~-~sv 306 (409)
+|...++|..|.|+.+-+.+++.++.+... +.+.. + +. .|.+. .-.++|++|-+.+.+.. ++|+ |+.
T Consensus 240 ~y~t~~fW~QiKtagsal~as~lYLs~yk~----t~p~~-L---ak-~pgt~--a~IigdVyIhPsakvhptAkiGPNVS 308 (407)
T KOG1460|consen 240 AYETTDFWSQIKTAGSALYASRLYLSQYKR----THPAR-L---AK-GPGTQ--AEIIGDVYIHPSAKVHPTAKIGPNVS 308 (407)
T ss_pred EEecccHHHHhccccceeehhhhHHHHHhh----cCchh-h---cC-CCCCC--ceEEeeeEEcCcceeCCccccCCCce
Confidence 999999999999999999999988874311 01100 0 00 11111 01247888888888888 8888 999
Q ss_pred ECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEEeCC
Q 015296 307 VGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNS 375 (409)
Q Consensus 307 Ig~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~~~ 375 (409)
||.+++||+|++|.+|+|.++ +.|.+|+.+-+||||+.+.||.++.+...
T Consensus 309 Iga~vrvg~GvRl~~sIIl~d-------------------~ei~enavVl~sIigw~s~iGrWaRVe~~ 358 (407)
T KOG1460|consen 309 IGANVRVGPGVRLRESIILDD-------------------AEIEENAVVLHSIIGWKSSIGRWARVEGI 358 (407)
T ss_pred ecCCceecCCceeeeeeeccC-------------------cEeeccceEEeeeecccccccceeeeccc
Confidence 999999999999999999987 47999999999999999999999988544
No 26
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=9.2e-28 Score=233.57 Aligned_cols=253 Identities=21% Similarity=0.382 Sum_probs=177.4
Q ss_pred cCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccCh-hhHHHHHHHHHH------
Q 015296 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS-ASLNRHLSRAYA------ 159 (409)
Q Consensus 87 ~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~-~~i~~~l~~~~~------ 159 (409)
|.++++|++|||.||||-.++...||+||||++ +|||+|+|.+|.++|+++|.|++...+ ..++..|.+.+.
T Consensus 7 ~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn-~PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l~~~~~ 85 (433)
T KOG1462|consen 7 MSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGN-KPMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDLKKRPD 85 (433)
T ss_pred hHHhhhheeecCCceechhhhhhcchhhcccCC-cceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCccccccc
Confidence 567899999999999999999999999999995 799999999999999999999999754 567777755322
Q ss_pred -----------------------------------------------HHHHHcCCC------------------------
Q 015296 160 -----------------------------------------------KQLKAMKVD------------------------ 168 (409)
Q Consensus 160 -----------------------------------------------e~~~~~~~d------------------------ 168 (409)
+.+++.+..
T Consensus 86 ~v~ip~~~~~d~gtadsLr~Iy~kikS~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s~~~~pgqk~k~k~~ 165 (433)
T KOG1462|consen 86 YVEIPTDDNSDFGTADSLRYIYSKIKSEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALSEVPIPGQKGKKKQA 165 (433)
T ss_pred EEEeecccccccCCHHHHhhhhhhhccCCEEEEecccccCCCcHHHHHHHhccChhHhHHhccccccccccCcccccccc
Confidence 122211000
Q ss_pred eEEEEecCC---------------cc-------cCCC------cEEEEEEEEEeHHHHHHHHhhcCCCCCcchhchHHHH
Q 015296 169 TTILGLDDE---------------RA-------KEMP------YIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGA 220 (409)
Q Consensus 169 ~til~~~~~---------------~~-------~ekp------~~~~~Giyif~~~vl~~ll~~~~~~~~d~~~dli~~l 220 (409)
.+++++++. ++ ...| .+.++.+|+|+..+++.| +... .-.+|-.+++|.+
T Consensus 166 ~d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d~l-~~~~-sisSfk~~f~P~l 243 (433)
T KOG1462|consen 166 RDVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVIDLL-SEKE-SISSFKADFLPYL 243 (433)
T ss_pred cceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHHHH-hcCC-cceeecccccchh
Confidence 011111110 00 0123 577899999999999855 4221 1223444555555
Q ss_pred HhCC--------------------------------CeEEEEEe--cCeEEEcCCHHHHHHHHH--hhccCCCCCCcccC
Q 015296 221 TSIG--------------------------------MRVQAYLY--DGYWEDIGTIEAFYNANL--GITKKPIPDFSFYD 264 (409)
Q Consensus 221 l~~g--------------------------------~~V~a~~~--~gyw~DIgt~edy~~an~--~ll~~~~~~~~~~~ 264 (409)
++.. .++++|.. +.-+..++|.-.|+++|+ .+.+-. +...|..
T Consensus 244 vkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~~~~l~-~e~~~~k 322 (433)
T KOG1462|consen 244 VKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINRDKKLKKLC-SEAKFVK 322 (433)
T ss_pred hhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhHHHHHHHhc-ccccccc
Confidence 4422 23444444 345678899999999994 222211 2111111
Q ss_pred CCCCccCCCcccCCceEecceEEEEEECCCcEEcc-eEEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCC
Q 015296 265 RSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKG 343 (409)
Q Consensus 265 ~~~~i~~~~~~~~p~~i~~~~i~~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g 343 (409)
. +.+.....-.+++|+++|.|++ +.|..|+||.+|.||+.|+|.+|++|++
T Consensus 323 ~------------~~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~n---------------- 374 (433)
T KOG1462|consen 323 N------------YVKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDN---------------- 374 (433)
T ss_pred c------------hhhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecC----------------
Confidence 1 1111111124689999999998 9999999999999999999999999998
Q ss_pred CcceEeCCCCEEcceEeCCCCEECCCcEEeC
Q 015296 344 SVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 374 (409)
Q Consensus 344 ~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~~ 374 (409)
|.||+++.|++||||.+|.||+++.+.|
T Consensus 375 ---V~vg~G~~IensIIg~gA~Ig~gs~L~n 402 (433)
T KOG1462|consen 375 ---VVVGDGVNIENSIIGMGAQIGSGSKLKN 402 (433)
T ss_pred ---cEecCCcceecceecccceecCCCeeee
Confidence 6799999999999999999999999975
No 27
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=3.8e-27 Score=221.60 Aligned_cols=209 Identities=22% Similarity=0.295 Sum_probs=151.5
Q ss_pred eEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEccc-ChhhHHHHHHHH--HH-------
Q 015296 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF-NSASLNRHLSRA--YA------- 159 (409)
Q Consensus 90 m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~-~~~~i~~~l~~~--~~------- 159 (409)
|||||||||.||||+|+|...||+|+||.+ ||||+|+|+.|+.+||++|.|++++ ....++++++++ |.
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~-KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGdgs~~gv~itY~~ 79 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYD-KPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGDGSDFGVDITYAV 79 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecC-cchhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcCccccCcceEEEe
Confidence 799999999999999999999999999997 6999999999999999999999998 567888888873 22
Q ss_pred ----------------------------------------HHHHHcCCCeEEE-------------Eec---------CC
Q 015296 160 ----------------------------------------KQLKAMKVDTTIL-------------GLD---------DE 177 (409)
Q Consensus 160 ----------------------------------------e~~~~~~~d~til-------------~~~---------~~ 177 (409)
+++.+...+.+++ .++ |+
T Consensus 80 Q~~p~GlA~Av~~a~~fv~~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e~d~~~~v~~l~EK 159 (286)
T COG1209 80 QPEPDGLAHAVLIAEDFVGDDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDDPSRYGVVEFDEDGKVIGLEEK 159 (286)
T ss_pred cCCCCcHHHHHHHHHhhcCCCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCCcccceEEEEcCCCcEEEeEEC
Confidence 1122222344333 233 23
Q ss_pred cccCCCcEEEEEEEEEeHHHHHHHHhhcCC--CCCcchhchHHHHHhCCCeEEEEEecCeEEEcCCHHHHHHHHHhhccC
Q 015296 178 RAKEMPYIASMGIYVISKDVMLNLLRDKFP--GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK 255 (409)
Q Consensus 178 ~~~ekp~~~~~Giyif~~~vl~~ll~~~~~--~~~d~~~dli~~ll~~g~~V~a~~~~gyw~DIgt~edy~~an~~ll~~ 255 (409)
+..++++++.+|+|+|++++|+.+ +...| ..+.-++|++..++++|..+......|.|.|.||+++|++|++.++..
T Consensus 160 P~~P~SNlAvtGlY~~d~~Vf~~~-~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~~ 238 (286)
T COG1209 160 PKEPKSNLAVTGLYFYDPSVFEAI-KQIKPSARGELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRTV 238 (286)
T ss_pred CCCCCCceeEEEEEEeChHHHHHH-HcCCCCCCCceEehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHHH
Confidence 333444899999999999999854 44444 233345899999999999999999999999999999999999987763
Q ss_pred CCCCCcccCCCCCccCCCcccCCceEecceEEEEEECCCcEEcc-eEEeceEECCCCEECCC
Q 015296 256 PIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEG 316 (409)
Q Consensus 256 ~~~~~~~~~~~~~i~~~~~~~~p~~i~~~~i~~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~ 316 (409)
..- .+..+..|..+ +.+++|...++|+. |.++++-+|+...++.+
T Consensus 239 ~~~------------~G~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~G~y~~~~~~ 284 (286)
T COG1209 239 SKR------------QGFKIACPEEI----AWNGWIDGPGLIGLASQLEKSGYGQYLLELLR 284 (286)
T ss_pred Hhh------------cCCEEeChhHE----EEecEEechHhhccccchhhcCcchhhhhhhc
Confidence 211 11111222221 23555556666666 66666666666655544
No 28
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=99.94 E-value=5.6e-26 Score=215.78 Aligned_cols=164 Identities=34% Similarity=0.655 Sum_probs=129.9
Q ss_pred EEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCce-EEEEcccChhhHHHHHHHHHH----------
Q 015296 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISK-IYVLTQFNSASLNRHLSRAYA---------- 159 (409)
Q Consensus 91 ~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~-I~Vv~~~~~~~i~~~l~~~~~---------- 159 (409)
||||||||+||||+|||..+||||+|++|++|||+|+|++|.++|+++ |+|+++++.+++.+|+.+.+.
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~~~~~~i~~i~~ 80 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGYKFGVKIEYIVQ 80 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSGGGTEEEEEEEE
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccccccccccceeeec
Confidence 799999999999999999999999999986699999999999999999 555556888999999987532
Q ss_pred -------------------------------------------HHHHHcCCC--eEEE-------------EecCC----
Q 015296 160 -------------------------------------------KQLKAMKVD--TTIL-------------GLDDE---- 177 (409)
Q Consensus 160 -------------------------------------------e~~~~~~~d--~til-------------~~~~~---- 177 (409)
+.|...+.+ .++. .++++
T Consensus 81 ~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~V~ 160 (248)
T PF00483_consen 81 PEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDEDGRVI 160 (248)
T ss_dssp SSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETTSEEE
T ss_pred ccccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhccccccccccccccccccccceeeeeccceeEE
Confidence 233333332 2222 12221
Q ss_pred cccCCC------cEEEEEEEEEeHHHHHHHHh--hcCCCCCcchhchHHHHHhCCCeEEEEEecC--eEEEcCCHHHHHH
Q 015296 178 RAKEMP------YIASMGIYVISKDVMLNLLR--DKFPGANDFGSEVIPGATSIGMRVQAYLYDG--YWEDIGTIEAFYN 247 (409)
Q Consensus 178 ~~~ekp------~~~~~Giyif~~~vl~~ll~--~~~~~~~d~~~dli~~ll~~g~~V~a~~~~g--yw~DIgt~edy~~ 247 (409)
.+.||| .++++|+|+|++++|..+++ ......++++.|+++.+++++..+.++.+++ +|.||||+++|++
T Consensus 161 ~~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~ 240 (248)
T PF00483_consen 161 RIVEKPDNPNASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLE 240 (248)
T ss_dssp EEEESCSSHSHSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHH
T ss_pred EEeccCcccccceeccCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHH
Confidence 245565 48999999999999987754 2223456778999999999998899999999 8999999999999
Q ss_pred HHHhhcc
Q 015296 248 ANLGITK 254 (409)
Q Consensus 248 an~~ll~ 254 (409)
|++.+++
T Consensus 241 a~~~~~~ 247 (248)
T PF00483_consen 241 ANMDLLN 247 (248)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 9998875
No 29
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=99.94 E-value=1e-25 Score=220.73 Aligned_cols=163 Identities=20% Similarity=0.289 Sum_probs=126.6
Q ss_pred cCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHH--------
Q 015296 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY-------- 158 (409)
Q Consensus 87 ~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~-------- 158 (409)
|.+|+|||||||.||||+|+|+.+||||+||+| +|+|+|+|+++.++|+++|+|+++|+.+++++|+.+.|
T Consensus 1 ~~~mkavILAaG~GTRL~PlT~~~PKpLvpV~g-kPiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVD-KPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCCCCcccCcccCCCCceeeEECC-EEHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHH
Confidence 568999999999999999999999999999998 59999999999999999999999999999999986432
Q ss_pred ----------------H---------------------------------------H---------H-------HHHcCC
Q 015296 159 ----------------A---------------------------------------K---------Q-------LKAMKV 167 (409)
Q Consensus 159 ----------------~---------------------------------------e---------~-------~~~~~~ 167 (409)
. + . |.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~ 159 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVGDNPFVVVLPDIIIDDATADPLRYNLAAMIARFNETGR 159 (297)
T ss_pred hcchhhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhCCCCEEEEECCeeccccccccchhHHHHHHHHHHHhCC
Confidence 1 1 0 111111
Q ss_pred Ce-------------EEEEec-----CC------cccCCC--------cEEEEEEEEEeHHHHHHHHhhcCC--CCCcch
Q 015296 168 DT-------------TILGLD-----DE------RAKEMP--------YIASMGIYVISKDVMLNLLRDKFP--GANDFG 213 (409)
Q Consensus 168 d~-------------til~~~-----~~------~~~ekp--------~~~~~Giyif~~~vl~~ll~~~~~--~~~d~~ 213 (409)
.. +++.++ +. ++.||| .++++|+|+|++++|+.+ +...+ ..+..+
T Consensus 160 ~~~~~~~~~~~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~~l-~~~~~~~~ge~~l 238 (297)
T TIGR01105 160 SQVLAKRMPGDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAEL-ERTEPGAWGRIQL 238 (297)
T ss_pred cEEEEEEcCCCCccceEEEecccccCCCCeeeEeEEEECCCCcccCCcCEEEEEEEEECHHHHHHH-hcCCCCCCCeeeH
Confidence 11 122221 11 233555 479999999999998855 43222 123345
Q ss_pred hchHHHHHhCCCeEEEEEecCeEEEcCCHHHHHHHHHhh
Q 015296 214 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 252 (409)
Q Consensus 214 ~dli~~ll~~g~~V~a~~~~gyw~DIgt~edy~~an~~l 252 (409)
+|+++.++++ .+++++.++|+|+|+|+|++|.+||.++
T Consensus 239 td~i~~l~~~-~~v~~~~~~g~w~DiG~p~~~~~a~~~~ 276 (297)
T TIGR01105 239 TDAIAELAKK-QSVDAMLMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred HHHHHHHHhc-CCEEEEEeccEEECCCCHHHHHHHHHHH
Confidence 7999999985 4899999999999999999999998876
No 30
>PRK10122 GalU regulator GalF; Provisional
Probab=99.93 E-value=2.1e-25 Score=218.79 Aligned_cols=167 Identities=19% Similarity=0.276 Sum_probs=130.1
Q ss_pred cCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHH--------
Q 015296 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY-------- 158 (409)
Q Consensus 87 ~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~-------- 158 (409)
|+.|+|||||||+||||+|+|+.+||||+||+|+ |+|+|+|+++.++|+++|+|++++..+++++|+...|
T Consensus 1 ~~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 6789999999999999999999999999999985 9999999999999999999999999999999986322
Q ss_pred ----------------H---------------------------------------H----------------HHHHcCC
Q 015296 159 ----------------A---------------------------------------K----------------QLKAMKV 167 (409)
Q Consensus 159 ----------------~---------------------------------------e----------------~~~~~~~ 167 (409)
. + .|.+.+.
T Consensus 80 ~~k~~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l~~~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~ 159 (297)
T PRK10122 80 RVKRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGR 159 (297)
T ss_pred cchhhhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHcCCCCEEEEECCeeccCccccccchhHHHHHHHHHHhCC
Confidence 0 1 0111122
Q ss_pred CeE-------------EEEec-----CC------cccCCC--------cEEEEEEEEEeHHHHHHHHhhcCC-CCCcchh
Q 015296 168 DTT-------------ILGLD-----DE------RAKEMP--------YIASMGIYVISKDVMLNLLRDKFP-GANDFGS 214 (409)
Q Consensus 168 d~t-------------il~~~-----~~------~~~ekp--------~~~~~Giyif~~~vl~~ll~~~~~-~~~d~~~ 214 (409)
+.+ ++.++ +. ++.||| .++++|+|+|++++|..+.+.... ..+.+++
T Consensus 160 ~~~~~~~~~~~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~~e~~lt 239 (297)
T PRK10122 160 SQVLAKRMPGDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPELERTEPGAWGRIQLT 239 (297)
T ss_pred cEEEEEECCCCCCCceEEEecCcccCCCCeeeEEEEEECCCCcccCCccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHH
Confidence 221 22232 11 233554 468999999999999876442211 1344568
Q ss_pred chHHHHHhCCCeEEEEEecCeEEEcCCHHHHHHHHHhh-ccC
Q 015296 215 EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI-TKK 255 (409)
Q Consensus 215 dli~~ll~~g~~V~a~~~~gyw~DIgt~edy~~an~~l-l~~ 255 (409)
|+++.++++ .++.+|.++|+|+|+|+|++|..|+.++ ++.
T Consensus 240 d~i~~l~~~-~~v~~~~~~G~w~DiG~p~~~~~a~~~~~~~~ 280 (297)
T PRK10122 240 DAIAELAKK-QSVDAMLMTGDSYDCGKKMGYMQAFVKYGLRN 280 (297)
T ss_pred HHHHHHHhC-CCEEEEEeCCEEEcCCCHHHHHHHHHHHHhcC
Confidence 999999985 5899999999999999999999999988 554
No 31
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=99.92 E-value=2.2e-24 Score=203.83 Aligned_cols=157 Identities=27% Similarity=0.428 Sum_probs=126.0
Q ss_pred eEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHHH----------
Q 015296 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYA---------- 159 (409)
Q Consensus 90 m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~~---------- 159 (409)
|++||||||.||||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+ |.
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~-~~~~~~~~i~~~ 78 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKE-YEKKLGIKITFS 78 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhc-ccccCCeEEEec
Confidence 7899999999999999999999999999985 99999999999999999999999999999888874 20
Q ss_pred -------------------------------------------HHHHHcCCCeEEEE-------------ecC-C----c
Q 015296 160 -------------------------------------------KQLKAMKVDTTILG-------------LDD-E----R 178 (409)
Q Consensus 160 -------------------------------------------e~~~~~~~d~til~-------------~~~-~----~ 178 (409)
++|++.+.+.+++. +++ + +
T Consensus 79 ~~~~~~G~~~al~~a~~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~~v~~ 158 (233)
T cd06425 79 IETEPLGTAGPLALARDLLGDDDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVEDPSKYGVVVHDENTGRIER 158 (233)
T ss_pred cCCCCCccHHHHHHHHHHhccCCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCCccccCeEEEcCCCCEEEE
Confidence 23333344444432 222 1 2
Q ss_pred ccCCC-----cEEEEEEEEEeHHHHHHHHhhcCCCCCcchhchHHHHHhCCCeEEEEEecCeEEEcCCHHHHHHHHHhhc
Q 015296 179 AKEMP-----YIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 253 (409)
Q Consensus 179 ~~ekp-----~~~~~Giyif~~~vl~~ll~~~~~~~~d~~~dli~~ll~~g~~V~a~~~~gyw~DIgt~edy~~an~~ll 253 (409)
+.+|| .++++|+|+|++++|+.+.. ...++..++++.+++++ ++.+|.++|||.||||+++|++|++.+|
T Consensus 159 ~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~----~~~~~~~~~~~~l~~~~-~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 159 FVEKPKVFVGNKINAGIYILNPSVLDRIPL----RPTSIEKEIFPKMASEG-QLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred EEECCCCCCCCEEEEEEEEECHHHHHhccc----CcccchhhhHHHHHhcC-CEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 33454 47899999999999976533 12345578999999864 8999999999999999999999998664
No 32
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=99.92 E-value=2.6e-24 Score=207.40 Aligned_cols=162 Identities=23% Similarity=0.346 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHH-----------
Q 015296 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY----------- 158 (409)
Q Consensus 90 m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~----------- 158 (409)
|++||||||.||||+|+|..+||||+|++|+ |||+|+|+++.++|+++|+|+++++.+++.+|+.+.|
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhccc
Confidence 6899999999999999999999999999985 9999999999999999999999999999988885311
Q ss_pred --------------H------------------------------------------------HHHHHcCCCeE------
Q 015296 159 --------------A------------------------------------------------KQLKAMKVDTT------ 170 (409)
Q Consensus 159 --------------~------------------------------------------------e~~~~~~~d~t------ 170 (409)
. +.|...+.+..
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (267)
T cd02541 80 TDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASVIAVEEVP 159 (267)
T ss_pred HHHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhCCCceEEEECCeEEeCCchHHHHHHHHHHHhCCCEEEEEEcC
Confidence 1 11111122211
Q ss_pred --------EEEecC---C-----cccCCC-------cEEEEEEEEEeHHHHHHHHhhcC-CCCCcchhchHHHHHhCCCe
Q 015296 171 --------ILGLDD---E-----RAKEMP-------YIASMGIYVISKDVMLNLLRDKF-PGANDFGSEVIPGATSIGMR 226 (409)
Q Consensus 171 --------il~~~~---~-----~~~ekp-------~~~~~Giyif~~~vl~~ll~~~~-~~~~d~~~dli~~ll~~g~~ 226 (409)
++.+++ . .+.||| .++++|+|+|++++|..+.+... ...+.+..++++.+++++ +
T Consensus 160 ~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~-~ 238 (267)
T cd02541 160 PEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKLLEEE-P 238 (267)
T ss_pred hhcCccceEEEeecCCCCceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHHHHhCCCCCCCcEEHHHHHHHHHhcC-C
Confidence 112222 0 123454 57899999999999987644211 123345679999999876 8
Q ss_pred EEEEEecCeEEEcCCHHHHHHHHHhhc
Q 015296 227 VQAYLYDGYWEDIGTIEAFYNANLGIT 253 (409)
Q Consensus 227 V~a~~~~gyw~DIgt~edy~~an~~ll 253 (409)
+.+|.++|||.||||+++|++||+++.
T Consensus 239 v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 239 VYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred EEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 999999999999999999999999874
No 33
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=99.92 E-value=4.2e-24 Score=208.95 Aligned_cols=165 Identities=25% Similarity=0.400 Sum_probs=126.3
Q ss_pred cCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcc-cChhhHHHHHHHH--HH----
Q 015296 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQ-FNSASLNRHLSRA--YA---- 159 (409)
Q Consensus 87 ~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~-~~~~~i~~~l~~~--~~---- 159 (409)
|+.|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++|+++|++++. +..+++++|+++. |.
T Consensus 1 m~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~ 79 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQ 79 (292)
T ss_pred CCceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcCccccCceeE
Confidence 6789999999999999999999999999999985 99999999999999999997765 5568889998752 32
Q ss_pred --------------------------------------------HHHHHcCCCeEEEE-------------ecCC----c
Q 015296 160 --------------------------------------------KQLKAMKVDTTILG-------------LDDE----R 178 (409)
Q Consensus 160 --------------------------------------------e~~~~~~~d~til~-------------~~~~----~ 178 (409)
+.|.+.+.+.+++. ++++ .
T Consensus 80 y~~q~~~~Gta~Al~~a~~~i~~~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~p~~yGvv~~d~~g~v~~ 159 (292)
T PRK15480 80 YKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQNGTAIS 159 (292)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcCCcccCcEEEECCCCcEEE
Confidence 22333334555443 2221 2
Q ss_pred ccCCC-----cEEEEEEEEEeHHHHHHHHhhcCCC--CCcchhchHHHHHhCCCeEEEEEecCe-EEEcCCHHHHHHHHH
Q 015296 179 AKEMP-----YIASMGIYVISKDVMLNLLRDKFPG--ANDFGSEVIPGATSIGMRVQAYLYDGY-WEDIGTIEAFYNANL 250 (409)
Q Consensus 179 ~~ekp-----~~~~~Giyif~~~vl~~ll~~~~~~--~~d~~~dli~~ll~~g~~V~a~~~~gy-w~DIgt~edy~~an~ 250 (409)
+.||| .++++|+|+|++++++.+ +...+. .+..++|+++.++++|..+..+..+|+ |.|+||+++|.+|+.
T Consensus 160 i~EKP~~p~s~~a~~GiY~~~~~v~~~~-~~~~~~~~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~ 238 (292)
T PRK15480 160 LEEKPLQPKSNYAVTGLYFYDNDVVEMA-KNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASN 238 (292)
T ss_pred EEECCCCCCCCEEEEEEEEEChHHHHHH-hhcCCCCCCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHH
Confidence 34554 689999999999998754 433221 222357999999998865566677784 999999999999998
Q ss_pred hhc
Q 015296 251 GIT 253 (409)
Q Consensus 251 ~ll 253 (409)
.+.
T Consensus 239 ~~~ 241 (292)
T PRK15480 239 FIA 241 (292)
T ss_pred HHH
Confidence 765
No 34
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=99.91 E-value=4.8e-24 Score=204.60 Aligned_cols=158 Identities=23% Similarity=0.407 Sum_probs=123.9
Q ss_pred EEEEcCC--CCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhh-CCCceEEEEcccChhhHHHHHHHHH---H------
Q 015296 92 GIILGGG--AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSASLNRHLSRAY---A------ 159 (409)
Q Consensus 92 aIILAaG--~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~-~Gi~~I~Vv~~~~~~~i~~~l~~~~---~------ 159 (409)
||||||| +||||+|+|..+||||+||+|+ |||+|+|++|.+ +|+++|+|++++..+++++|+.+.. .
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~ 79 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYL 79 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccccCceEEEe
Confidence 6899999 8999999999999999999985 999999999999 6999999999999999999986421 0
Q ss_pred --------------------------------------------HHHHHcCCCeEEEE---------------ec-CC--
Q 015296 160 --------------------------------------------KQLKAMKVDTTILG---------------LD-DE-- 177 (409)
Q Consensus 160 --------------------------------------------e~~~~~~~d~til~---------------~~-~~-- 177 (409)
++|++.+.+.+++. ++ ++
T Consensus 80 ~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g~ 159 (257)
T cd06428 80 QEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGE 159 (257)
T ss_pred cCCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCCe
Confidence 33333344455433 22 11
Q ss_pred --cccCCC-----cEEEEEEEEEeHHHHHHHHhhcC-----------------CCCCcchhchHHHHHhCCCeEEEEEec
Q 015296 178 --RAKEMP-----YIASMGIYVISKDVMLNLLRDKF-----------------PGANDFGSEVIPGATSIGMRVQAYLYD 233 (409)
Q Consensus 178 --~~~ekp-----~~~~~Giyif~~~vl~~ll~~~~-----------------~~~~d~~~dli~~ll~~g~~V~a~~~~ 233 (409)
.+.||| .++++|+|+|++++|+.+.+... .+..++..|+++.+++++ ++.+|.++
T Consensus 160 v~~~~Ekp~~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~-~v~~~~~~ 238 (257)
T cd06428 160 VLHYVEKPETFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSG-KLYVYKTD 238 (257)
T ss_pred EEEEEeCCCCcccceEEEEEEEECHHHHHHHhhhccccccccccccccccccccceeeehhhhhhHHhccC-CEEEecCC
Confidence 234555 58999999999999976543111 011245579999999865 89999999
Q ss_pred CeEEEcCCHHHHHHHHHh
Q 015296 234 GYWEDIGTIEAFYNANLG 251 (409)
Q Consensus 234 gyw~DIgt~edy~~an~~ 251 (409)
|||.||||+++|+++|+.
T Consensus 239 g~w~dig~~~~~~~a~~~ 256 (257)
T cd06428 239 DFWSQIKTAGSAIYANRL 256 (257)
T ss_pred CeeecCCCHHHHHhHhhc
Confidence 999999999999999975
No 35
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=99.91 E-value=8.7e-24 Score=202.89 Aligned_cols=162 Identities=19% Similarity=0.305 Sum_probs=130.2
Q ss_pred EEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHH------------
Q 015296 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY------------ 158 (409)
Q Consensus 91 ~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~------------ 158 (409)
+|||||||.||||+|+|..+||||+||+| +|||+|+|+++.++|+++|+|+++|+.+++++|+.+..
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g-~pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGG-KPILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECC-EEHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 58999999999999999999999999998 59999999999999999999999999999988876410
Q ss_pred ---------------------H-------------------------------------HHHHHcCCCeEEEEe------
Q 015296 159 ---------------------A-------------------------------------KQLKAMKVDTTILGL------ 174 (409)
Q Consensus 159 ---------------------~-------------------------------------e~~~~~~~d~til~~------ 174 (409)
. +.|...+.+.+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~~~~~~y 159 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLDDEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAVQPPGRF 159 (254)
T ss_pred cccccccccCCccceeeeecCCcCCcHHHHHHHHHhcCCCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEecCCCcc
Confidence 0 334444556555432
Q ss_pred -----cCC---cccCCC----cEEEEEEEEEeHHHHHHHHhhcCCCCCcchhchHHHHHhCCCeEEEEEecCeEEEcCCH
Q 015296 175 -----DDE---RAKEMP----YIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTI 242 (409)
Q Consensus 175 -----~~~---~~~ekp----~~~~~Giyif~~~vl~~ll~~~~~~~~d~~~dli~~ll~~g~~V~a~~~~gyw~DIgt~ 242 (409)
+++ .+.||| .++++|+|+|++++|+ +++. ...++.+|+++.+++++ ++.+|.++|||.||||+
T Consensus 160 G~v~~d~~~V~~~~Ekp~~~~~~i~~Giyi~~~~il~-~l~~---~~~~~~~d~i~~l~~~~-~v~~~~~~g~w~dIgt~ 234 (254)
T TIGR02623 160 GALDLEGEQVTSFQEKPLGDGGWINGGFFVLNPSVLD-LIDG---DATVWEQEPLETLAQRG-ELSAYEHSGFWQPMDTL 234 (254)
T ss_pred cEEEECCCeEEEEEeCCCCCCCeEEEEEEEEcHHHHh-hccc---cCchhhhhHHHHHHhCC-CEEEEeCCCEEecCCch
Confidence 222 234555 5799999999999985 4443 22367789999999976 79999999999999999
Q ss_pred HHHHHHHHhhccCCCC
Q 015296 243 EAFYNANLGITKKPIP 258 (409)
Q Consensus 243 edy~~an~~ll~~~~~ 258 (409)
++|.+++..+.....|
T Consensus 235 ~~~~~~~~~~~~~~~~ 250 (254)
T TIGR02623 235 RDKNYLEELWESGRAP 250 (254)
T ss_pred HHHHHHHHHHHcCCCC
Confidence 9999999988765533
No 36
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=99.91 E-value=2e-23 Score=198.07 Aligned_cols=160 Identities=28% Similarity=0.406 Sum_probs=121.0
Q ss_pred eEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEccc-ChhhHHHHHHH--HHH-------
Q 015296 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF-NSASLNRHLSR--AYA------- 159 (409)
Q Consensus 90 m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~-~~~~i~~~l~~--~~~------- 159 (409)
|+|||||||.||||+|+|..+||||+|++| +|||+|+|+++.++|+++|++++++ ..+++.+|+.+ .|.
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~-~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~~~~~~~~i~~~~ 79 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYD-KPMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGDGSDLGIRITYAV 79 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECC-EEhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhcccccCceEEEee
Confidence 689999999999999999999999999996 6999999999999999999999875 45788888864 232
Q ss_pred -----------------------------------------HHHHHcCCCeEEEE-------------ecCC----cccC
Q 015296 160 -----------------------------------------KQLKAMKVDTTILG-------------LDDE----RAKE 181 (409)
Q Consensus 160 -----------------------------------------e~~~~~~~d~til~-------------~~~~----~~~e 181 (409)
+.|...+.+.+++. ++++ .+.+
T Consensus 80 ~~~~~G~~~al~~a~~~~~~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~g~v~~~~e 159 (240)
T cd02538 80 QPKPGGLAQAFIIGEEFIGDDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVNDPERYGVVEFDENGRVLSIEE 159 (240)
T ss_pred CCCCCCHHHHHHHHHHhcCCCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECCchhcCceEEecCCCcEEEEEE
Confidence 22222234444433 2222 2334
Q ss_pred CC-----cEEEEEEEEEeHHHHHHHHhhcCC--CCCcchhchHHHHHhCCCeEEEEEec--CeEEEcCCHHHHHHHHHhh
Q 015296 182 MP-----YIASMGIYVISKDVMLNLLRDKFP--GANDFGSEVIPGATSIGMRVQAYLYD--GYWEDIGTIEAFYNANLGI 252 (409)
Q Consensus 182 kp-----~~~~~Giyif~~~vl~~ll~~~~~--~~~d~~~dli~~ll~~g~~V~a~~~~--gyw~DIgt~edy~~an~~l 252 (409)
|| .+.++|+|+|++++|+. ++...+ ..+.+..++++.++++| ++.++.++ |||.||||+++|+++++.+
T Consensus 160 kp~~~~~~~~~~Giyi~~~~~l~~-l~~~~~~~~~~~~l~d~~~~l~~~g-~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 160 KPKKPKSNYAVTGLYFYDNDVFEI-AKQLKPSARGELEITDVNNEYLEKG-KLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred CCCCCCCCeEEEEEEEECHHHHHH-HHhcCCCCCCeEEhHHHHHHHHHhC-CeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 54 57899999999998864 443222 12334579999999866 46666665 9999999999999999865
No 37
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.91 E-value=3.5e-23 Score=195.46 Aligned_cols=164 Identities=27% Similarity=0.404 Sum_probs=128.3
Q ss_pred eEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHH--H--------
Q 015296 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY--A-------- 159 (409)
Q Consensus 90 m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~--~-------- 159 (409)
|+|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|+++++.+.+++|+.+.+ .
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~i~~~~~ 79 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGSRFGVRITYILQ 79 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchhhcCCeEEEEEC
Confidence 7899999999999999999999999999985 9999999999999999999999999999999887532 1
Q ss_pred ---------------------------------------HHHHHcCCCeEEEE-------------ecCC---cccCCC-
Q 015296 160 ---------------------------------------KQLKAMKVDTTILG-------------LDDE---RAKEMP- 183 (409)
Q Consensus 160 ---------------------------------------e~~~~~~~d~til~-------------~~~~---~~~ekp- 183 (409)
+.|...+.+.+++. +++. .+.+||
T Consensus 80 ~~~~g~~~sl~~a~~~i~~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~v~~~~ek~~ 159 (236)
T cd04189 80 EEPLGLAHAVLAARDFLGDEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVEDPRRFGVAVVDDGRIVRLVEKPK 159 (236)
T ss_pred CCCCChHHHHHHHHHhcCCCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCCcccceEEEEcCCeEEEEEECCC
Confidence 12222233443322 1221 122443
Q ss_pred ----cEEEEEEEEEeHHHHHHHHhhcC-CCCCcchhchHHHHHhCCCeEEEEEecCeEEEcCCHHHHHHHHHhhcc
Q 015296 184 ----YIASMGIYVISKDVMLNLLRDKF-PGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 254 (409)
Q Consensus 184 ----~~~~~Giyif~~~vl~~ll~~~~-~~~~d~~~dli~~ll~~g~~V~a~~~~gyw~DIgt~edy~~an~~ll~ 254 (409)
...++|+|+|++++|..+..... ...+.+..++++.++++|.+|.++.+++||.||||+++|.++++.+++
T Consensus 160 ~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 160 EPPSNLALVGVYAFTPAIFDAISRLKPSWRGELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred CCCCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 57899999999999876532111 112344579999999888899999999999999999999999998875
No 38
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=99.90 E-value=2.4e-23 Score=199.75 Aligned_cols=157 Identities=22% Similarity=0.324 Sum_probs=120.9
Q ss_pred eEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHH-----------
Q 015296 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY----------- 158 (409)
Q Consensus 90 m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~----------- 158 (409)
|++||||||.||||+|+|..+||||+|++|+ |||+|+|+++.++|+++|+|+++++.+++++|+.+.|
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhh
Confidence 6899999999999999999999999999985 9999999999999999999999999999998886311
Q ss_pred --------------H------------------------------------------------HHHHHcCCCeE------
Q 015296 159 --------------A------------------------------------------------KQLKAMKVDTT------ 170 (409)
Q Consensus 159 --------------~------------------------------------------------e~~~~~~~d~t------ 170 (409)
. ++|+..+.+..
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~ 159 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSIIAVEEVP 159 (260)
T ss_pred HHHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHhCCCEEEEEECC
Confidence 0 11222223321
Q ss_pred --------EEEec---CC-----cccCCC-------cEEEEEEEEEeHHHHHHHHhhcCC-CCCcchhchHHHHHhCCCe
Q 015296 171 --------ILGLD---DE-----RAKEMP-------YIASMGIYVISKDVMLNLLRDKFP-GANDFGSEVIPGATSIGMR 226 (409)
Q Consensus 171 --------il~~~---~~-----~~~ekp-------~~~~~Giyif~~~vl~~ll~~~~~-~~~d~~~dli~~ll~~g~~ 226 (409)
++.++ ++ .+.||| .++++|+|+|++++|..+...... ..+.+..|+++.++++ .+
T Consensus 160 ~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~-~~ 238 (260)
T TIGR01099 160 KEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQLTDALRKLLEK-ET 238 (260)
T ss_pred hhhcccCceEEeccccCCceeEEEEEECCCCCCCCCceEEEEEEECCHHHHHHHHhCCCCCCCceeHHHHHHHHHhc-CC
Confidence 11222 11 233454 478999999999998877543221 2234567999999986 48
Q ss_pred EEEEEecCeEEEcCCHHHHHHH
Q 015296 227 VQAYLYDGYWEDIGTIEAFYNA 248 (409)
Q Consensus 227 V~a~~~~gyw~DIgt~edy~~a 248 (409)
+++|.++|||.||||+++|++|
T Consensus 239 v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 239 VYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred EEEEEcceEEEeCCCHHHHhhC
Confidence 9999999999999999999874
No 39
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.89 E-value=9.6e-23 Score=190.83 Aligned_cols=151 Identities=27% Similarity=0.392 Sum_probs=118.4
Q ss_pred EEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHH-HHH----------
Q 015296 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSR-AYA---------- 159 (409)
Q Consensus 91 ~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~-~~~---------- 159 (409)
+|||||||.||||+|+|..+||||+|++|+ |||+|+|+++.++|+++|+|+++++.+++.+|+.+ .|.
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~i~~~~~~~ 79 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGDSRFGLRITISDEPD 79 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhcccCCceEEEecCCC
Confidence 589999999999999999999999999985 99999999999999999999999999999998864 111
Q ss_pred --------------------------------------HHHH--HcCCCeEEEE-------------ecCC----cccCC
Q 015296 160 --------------------------------------KQLK--AMKVDTTILG-------------LDDE----RAKEM 182 (409)
Q Consensus 160 --------------------------------------e~~~--~~~~d~til~-------------~~~~----~~~ek 182 (409)
+.|. ..+.+.++.. ++++ .+.++
T Consensus 80 ~~~g~~~~l~~~~~~~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~v~~~~~~ 159 (221)
T cd06422 80 ELLETGGGIKKALPLLGDEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNPGHNGVGDFSLDADGRLRRGGGG 159 (221)
T ss_pred cccccHHHHHHHHHhcCCCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcCCCCCcceEEECCCCcEeecccC
Confidence 2232 1122233322 2211 12334
Q ss_pred C--cEEEEEEEEEeHHHHHHHHhhcCCCCCcchhchHHHHHhCCCeEEEEEecCeEEEcCCHHHHHHH
Q 015296 183 P--YIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNA 248 (409)
Q Consensus 183 p--~~~~~Giyif~~~vl~~ll~~~~~~~~d~~~dli~~ll~~g~~V~a~~~~gyw~DIgt~edy~~a 248 (409)
| ..+++|+|+|++++|..+.+. .....++++.+++++ ++.+|.++|||.||||+++|++|
T Consensus 160 ~~~~~~~~Giyi~~~~~l~~l~~~-----~~~~~d~~~~l~~~~-~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 160 AVAPFTFTGIQILSPELFAGIPPG-----KFSLNPLWDRAIAAG-RLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred CCCceEEEEEEEEcHHHHhhCCcC-----cccHHHHHHHHHHcC-CeEEEecCCEEEcCCCHHHHhhC
Confidence 4 688999999999999876432 234579999999865 78999999999999999999864
No 40
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=99.89 E-value=2.1e-22 Score=196.50 Aligned_cols=160 Identities=27% Similarity=0.433 Sum_probs=120.6
Q ss_pred EEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcc-cChhhHHHHHHHH--HH--------
Q 015296 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQ-FNSASLNRHLSRA--YA-------- 159 (409)
Q Consensus 91 ~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~-~~~~~i~~~l~~~--~~-------- 159 (409)
||||||||.||||+|+|+.+||||+||+|+ |||+|+|+++.++|+++|+|+++ ++.+.+++|+++. |.
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~g~~~g~~i~~~~q 79 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGVNLSYAVQ 79 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhccccccCceEEEEEc
Confidence 589999999999999999999999999985 99999999999999999998885 6678888888752 32
Q ss_pred ----------------------------------------HHHHHcCCCeEEEEe-------------cCC----cccCC
Q 015296 160 ----------------------------------------KQLKAMKVDTTILGL-------------DDE----RAKEM 182 (409)
Q Consensus 160 ----------------------------------------e~~~~~~~d~til~~-------------~~~----~~~ek 182 (409)
+.|.+.+.+.+++.. +++ ++.||
T Consensus 80 ~~~~Gta~al~~a~~~l~~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~g~V~~i~EK 159 (286)
T TIGR01207 80 PSPDGLAQAFIIGEDFIGGDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSDPERYGVVEFDSNGRAISIEEK 159 (286)
T ss_pred cCCCCHHHHHHHHHHHhCCCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEccCHHHCceEEECCCCeEEEEEEC
Confidence 222233445555432 221 23455
Q ss_pred C-----cEEEEEEEEEeHHHHHHHHhhcCC--CCCcchhchHHHHHhCCCeEEEEEe-cCe-EEEcCCHHHHHHHHHhhc
Q 015296 183 P-----YIASMGIYVISKDVMLNLLRDKFP--GANDFGSEVIPGATSIGMRVQAYLY-DGY-WEDIGTIEAFYNANLGIT 253 (409)
Q Consensus 183 p-----~~~~~Giyif~~~vl~~ll~~~~~--~~~d~~~dli~~ll~~g~~V~a~~~-~gy-w~DIgt~edy~~an~~ll 253 (409)
| .++++|+|+|++++++.+ +...+ ..+.+++|+++.++++|. +..+.+ .|+ |.|+||+++|++|+..+.
T Consensus 160 p~~~~s~~~~~GiYi~~~~i~~~l-~~~~~~~~ge~eitdv~~~~l~~g~-l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 160 PAQPKSNYAVTGLYFYDNRVVEIA-RQLKPSARGELEITDLNRVYLEEGR-LSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred CCCCCCCEEEEEEEEEchHHHHHH-hhcCCCCCCcEeHHHHHHHHHHcCC-cEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 4 589999999999997644 43322 223345799999999774 444444 676 999999999999997664
No 41
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=99.89 E-value=3.2e-22 Score=196.65 Aligned_cols=161 Identities=25% Similarity=0.369 Sum_probs=125.0
Q ss_pred CceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHH--H-------
Q 015296 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRA--Y------- 158 (409)
Q Consensus 88 ~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~--~------- 158 (409)
+-|++||||||.||||+|+|+.+||+|+|++|+ |+|+|+|+++.++|+++|+|+++++.+++.+|+.+. |
T Consensus 7 ~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~ 85 (302)
T PRK13389 7 KVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKR 85 (302)
T ss_pred cceEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhhh
Confidence 348999999999999999999999999999985 999999999999999999999999999999988642 1
Q ss_pred ------------------------H----------------------------------------------HHHHHcCCC
Q 015296 159 ------------------------A----------------------------------------------KQLKAMKVD 168 (409)
Q Consensus 159 ------------------------~----------------------------------------------e~~~~~~~d 168 (409)
. ++|.+.+.+
T Consensus 86 ~~~~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~~~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~ 165 (302)
T PRK13389 86 VKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHS 165 (302)
T ss_pred hhhHHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHcCCCCEEEEeCcceecccccccccccHHHHHHHHHhcCCC
Confidence 0 011111112
Q ss_pred eEEE-------------EecC-----------CcccCCC-------cEEEEEEEEEeHHHHHHHHhhcCC--CCCcchhc
Q 015296 169 TTIL-------------GLDD-----------ERAKEMP-------YIASMGIYVISKDVMLNLLRDKFP--GANDFGSE 215 (409)
Q Consensus 169 ~til-------------~~~~-----------~~~~ekp-------~~~~~Giyif~~~vl~~ll~~~~~--~~~d~~~d 215 (409)
+++ .+++ ..+.||| .++++|+|+|++++|+ +++...+ +.+.+++|
T Consensus 166 -tl~~~~~~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~~s~~~~~GiYi~~~~il~-~l~~~~~~~~~e~~l~d 243 (302)
T PRK13389 166 -QIMVEPVADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWP-LLAKTPPGAGDEIQLTD 243 (302)
T ss_pred -EEEEEEcccCCcceEEEecCcccccCCcceEEEEEECCCCCCCCccEEEEEEEEECHHHHH-HHHhCCCCCCCeeeHHH
Confidence 111 1111 0233454 4799999999999986 4443222 23456789
Q ss_pred hHHHHHhCCCeEEEEEecCeEEEcCCHHHHHHHHHhh
Q 015296 216 VIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 252 (409)
Q Consensus 216 li~~ll~~g~~V~a~~~~gyw~DIgt~edy~~an~~l 252 (409)
+++.++++ .++.+|.++|||.|||||++|.+|+.++
T Consensus 244 ~i~~l~~~-~~v~~~~~~G~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 244 AIDMLIEK-ETVEAYHMKGKSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred HHHHHHHc-CCEEEEEeeeEEEeCCCHHHHHHHHHHH
Confidence 99999985 5899999999999999999999999887
No 42
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.89 E-value=3.3e-22 Score=191.50 Aligned_cols=159 Identities=19% Similarity=0.256 Sum_probs=125.1
Q ss_pred EEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHH-------------
Q 015296 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY------------- 158 (409)
Q Consensus 92 aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~------------- 158 (409)
|||||||.||||+|+|..+||||+||+| +|||+|+++.+.++|+++|+|+++|+.+++++|+.+..
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~-~p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGG-RPILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECC-EEHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 6899999999999999999999999998 59999999999999999999999999999999886521
Q ss_pred -------------------------H---------------------------------HHHHHcCCCeEEEE-------
Q 015296 159 -------------------------A---------------------------------KQLKAMKVDTTILG------- 173 (409)
Q Consensus 159 -------------------------~---------------------------------e~~~~~~~d~til~------- 173 (409)
. +.|...+.+.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~ 159 (253)
T cd02524 80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGDDETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVHPPGRF 159 (253)
T ss_pred ceeeecccccccceeecccCcccccHHHHHHHHHhcCCCCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEecCCCcc
Confidence 0 12222233344332
Q ss_pred ----ecCC----cccCCC----cEEEEEEEEEeHHHHHHHHhhcCCCCCcchhchHHHHHhCCCeEEEEEecCeEEEcCC
Q 015296 174 ----LDDE----RAKEMP----YIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGT 241 (409)
Q Consensus 174 ----~~~~----~~~ekp----~~~~~Giyif~~~vl~~ll~~~~~~~~d~~~dli~~ll~~g~~V~a~~~~gyw~DIgt 241 (409)
++++ .+.+|| ..+++|+|+|++++++.+.. . ..++.+++++.+++++ ++.+|.++|||.||||
T Consensus 160 g~v~~d~~g~V~~~~ekp~~~~~~i~~Giyi~~~~l~~~l~~-~---~~~~~~d~l~~li~~~-~v~~~~~~g~w~~I~t 234 (253)
T cd02524 160 GELDLDDDGQVTSFTEKPQGDGGWINGGFFVLEPEVFDYIDG-D---DTVFEREPLERLAKDG-ELMAYKHTGFWQCMDT 234 (253)
T ss_pred cEEEECCCCCEEEEEECCCCCCceEEEEEEEECHHHHHhhcc-c---cchhhHHHHHHHHhcC-CEEEEecCCEEEeCcC
Confidence 2221 123444 47899999999999875532 2 3456689999999876 8999999999999999
Q ss_pred HHHHHHHHHhhccCC
Q 015296 242 IEAFYNANLGITKKP 256 (409)
Q Consensus 242 ~edy~~an~~ll~~~ 256 (409)
+++|..++..+....
T Consensus 235 ~~~~~~~~~~~~~~~ 249 (253)
T cd02524 235 LRDKQTLEELWNSGK 249 (253)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999998776544
No 43
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.88 E-value=4.3e-22 Score=185.89 Aligned_cols=153 Identities=23% Similarity=0.440 Sum_probs=120.2
Q ss_pred EEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHH--HH----------
Q 015296 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRA--YA---------- 159 (409)
Q Consensus 92 aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~--~~---------- 159 (409)
+||||||.|+||+|+|..+||+|+|++|+ |||+|+|++|.++|+++|+|+++++.+++++|+.+. |.
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 79 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDGSKFGVNISYVREDK 79 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCccccCccEEEEECCC
Confidence 68999999999999999999999999985 999999999999999999999999998888887541 11
Q ss_pred ------------------------------------HHHHHcCCCeEEEEe-------------cCC---cccCCC---c
Q 015296 160 ------------------------------------KQLKAMKVDTTILGL-------------DDE---RAKEMP---Y 184 (409)
Q Consensus 160 ------------------------------------e~~~~~~~d~til~~-------------~~~---~~~ekp---~ 184 (409)
+.++..+.+.+++.. ++. .+.++| .
T Consensus 80 ~~g~~~~l~~~~~~~~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~v~~~~ek~~~~~ 159 (220)
T cd06426 80 PLGTAGALSLLPEKPTDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEVQVPYGVVETEGGRITSIEEKPTHSF 159 (220)
T ss_pred CCcchHHHHHHHhhCCCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEECCCEEEEEEECCCCCC
Confidence 222223334443321 111 123444 5
Q ss_pred EEEEEEEEEeHHHHHHHHhhcCCCCCcchhchHHHHHhCCCeEEEEEecCeEEEcCCHHHHHHHH
Q 015296 185 IASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 249 (409)
Q Consensus 185 ~~~~Giyif~~~vl~~ll~~~~~~~~d~~~dli~~ll~~g~~V~a~~~~gyw~DIgt~edy~~an 249 (409)
++++|+|+|++++++.+ +. +.+....++++.++++|.++.+|+++|+|.|+||+++|+.||
T Consensus 160 ~~~~Giy~~~~~~~~~i-~~---~~~~~l~~~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 160 LVNAGIYVLEPEVLDLI-PK---NEFFDMPDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred eEEEEEEEEcHHHHhhc-CC---CCCcCHHHHHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 78999999999998754 21 222335789999999888899999999999999999999885
No 44
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.87 E-value=1.8e-21 Score=181.27 Aligned_cols=152 Identities=26% Similarity=0.465 Sum_probs=118.6
Q ss_pred EEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHH--H----------
Q 015296 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY--A---------- 159 (409)
Q Consensus 92 aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~--~---------- 159 (409)
|||||||.|+||+|+|..+||+|+|++| +|||+|+++++.++|+++|+|+++++.+.+.+|+.+.+ .
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g-~pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAG-RPFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGYRGGIRIYYVIEPE 79 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECC-cchHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCccccCceEEEEECCC
Confidence 6899999999999999999999999998 59999999999999999999999999888888887422 1
Q ss_pred -------------------------------------HHHHHcCCCeEEEE-------------ecCC----cccCCC--
Q 015296 160 -------------------------------------KQLKAMKVDTTILG-------------LDDE----RAKEMP-- 183 (409)
Q Consensus 160 -------------------------------------e~~~~~~~d~til~-------------~~~~----~~~ekp-- 183 (409)
+.|+..+.+.+++. ++++ .+.++|
T Consensus 80 ~~G~~~~l~~a~~~~~~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~v~~~~ek~~~ 159 (223)
T cd06915 80 PLGTGGAIKNALPKLPEDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPDASRYGNVTVDGDGRVIAFVEKGPG 159 (223)
T ss_pred CCcchHHHHHHHhhcCCCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCCCCcceeEEECCCCeEEEEEeCCCC
Confidence 22222233333221 2221 122333
Q ss_pred ---cEEEEEEEEEeHHHHHHHHhhcCCCCCcchhchHHHHHhCCCeEEEEEecCeEEEcCCHHHHHHHH
Q 015296 184 ---YIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 249 (409)
Q Consensus 184 ---~~~~~Giyif~~~vl~~ll~~~~~~~~d~~~dli~~ll~~g~~V~a~~~~gyw~DIgt~edy~~an 249 (409)
++.++|+|+|++++|..+... ..++.+++++.++++| ++.+|.++++|.||||++||+.|+
T Consensus 160 ~~~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~~~~~l~~~~-~v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 160 AAPGLINGGVYLLRKEILAEIPAD----AFSLEADVLPALVKRG-RLYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred CCCCcEEEEEEEECHHHHhhCCcc----CCChHHHHHHHHHhcC-cEEEEecCCeEEecCCHHHHHhhC
Confidence 578999999999998765322 2346678999999877 899999999999999999999873
No 45
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.86 E-value=1.4e-21 Score=180.74 Aligned_cols=147 Identities=48% Similarity=0.827 Sum_probs=109.8
Q ss_pred EEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHH--H-----------
Q 015296 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRA--Y----------- 158 (409)
Q Consensus 92 aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~--~----------- 158 (409)
|||||||.||||+|+|+.+||+|+|++|++|||+|+++++.++|+++|+|+++++.+++.+|+.+. |
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDLDRKNGGLFI 80 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccCCCCCCCEEE
Confidence 689999999999999999999999999744999999999999999999999999999999998632 1
Q ss_pred -----------H-----------HHHHHcCCCeEEEEecC----C---cc----cCC-C-----cEEEEEEEEEeHHHHH
Q 015296 159 -----------A-----------KQLKAMKVDTTILGLDD----E---RA----KEM-P-----YIASMGIYVISKDVML 199 (409)
Q Consensus 159 -----------~-----------e~~~~~~~d~til~~~~----~---~~----~ek-p-----~~~~~Giyif~~~vl~ 199 (409)
. +++.....+.-++...+ . .+ .++ . ..+++|+|+|++++|.
T Consensus 81 ~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~~~~g~yi~~~~~~~ 160 (200)
T cd02508 81 LPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYKASMGIYIFSKDLLI 160 (200)
T ss_pred eCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEhhcCEEEEEEHHHHH
Confidence 0 11111111211211111 0 00 111 1 1278999999999997
Q ss_pred HHHhhcC-CCCCcchhchHHHHHhCCCeEEEEEecCeEEEc
Q 015296 200 NLLRDKF-PGANDFGSEVIPGATSIGMRVQAYLYDGYWEDI 239 (409)
Q Consensus 200 ~ll~~~~-~~~~d~~~dli~~ll~~g~~V~a~~~~gyw~DI 239 (409)
.+++... .+.+++.+|+++.++++ .++.+|.++|||.||
T Consensus 161 ~~l~~~~~~~~~~~~~d~i~~l~~~-~~v~~~~~~g~w~di 200 (200)
T cd02508 161 ELLEEDAADGSHDFGKDIIPAMLKK-LKIYAYEFNGYWADI 200 (200)
T ss_pred HHHHHHhccCcchhHHHHHHHHhcc-CcEEEEEeCCeEecC
Confidence 6765432 23457789999999996 689999999999996
No 46
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.85 E-value=7.2e-21 Score=179.10 Aligned_cols=156 Identities=24% Similarity=0.350 Sum_probs=117.6
Q ss_pred EEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHH----------HH--
Q 015296 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRA----------YA-- 159 (409)
Q Consensus 92 aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~----------~~-- 159 (409)
|||||||.|+||+|+|..+||+|+|++| +|||+|+|+++.++|+++|+|+++++.+.+.+|+.+. |.
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g-~~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEING-KPLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKYPNIKFVYNPDYAET 79 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECC-EEHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhccCCeEEEeCcchhhh
Confidence 6899999999999999999999999998 5999999999999999999999999999999988531 11
Q ss_pred -------------------------------HHHHHcCCCeEEEEec--------------C-C---cccCCC------c
Q 015296 160 -------------------------------KQLKAMKVDTTILGLD--------------D-E---RAKEMP------Y 184 (409)
Q Consensus 160 -------------------------------e~~~~~~~d~til~~~--------------~-~---~~~ekp------~ 184 (409)
+.|.+.+.+.+++... + . .+.++| .
T Consensus 80 g~~~s~~~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~~~~~ 159 (229)
T cd02523 80 NNIYSLYLARDFLDEDFLLLEGDVVFDPSILERLLSSPADNAILVDKKTKEWEDEYVKDLDDAGVLLGIISKAKNLEEIQ 159 (229)
T ss_pred CcHHHHHHHHHHcCCCEEEEeCCEecCHHHHHHHHcCCCCCeEEEccCcccccccceeeecCccceEeecccCCCcchhc
Confidence 2222233444443221 0 0 122232 4
Q ss_pred EEEEEEEEEeHHHHHHHHhhc---C--CCCCcchhchHHHHHh-CCCeEEEEEecCeEEEcCCHHHHHHHH
Q 015296 185 IASMGIYVISKDVMLNLLRDK---F--PGANDFGSEVIPGATS-IGMRVQAYLYDGYWEDIGTIEAFYNAN 249 (409)
Q Consensus 185 ~~~~Giyif~~~vl~~ll~~~---~--~~~~d~~~dli~~ll~-~g~~V~a~~~~gyw~DIgt~edy~~an 249 (409)
..++|+|+|+++++..+.+.. . +...++.+++++.+++ .+..+..+.. +||.||||+++|++|+
T Consensus 160 ~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 160 GEYVGISKFSPEDADRLAEALEELIEAGRVNLYYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred eEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 789999999999987664321 1 1235667899999998 4556667766 8999999999999874
No 47
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.85 E-value=1.3e-20 Score=174.89 Aligned_cols=146 Identities=28% Similarity=0.509 Sum_probs=114.8
Q ss_pred EEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHH--H----------
Q 015296 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY--A---------- 159 (409)
Q Consensus 92 aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~--~---------- 159 (409)
|||||||.|+||+|+|..+||+|+|++| +|||+|+++++.++|+++|+|+++++.+.+.+|+.+.+ .
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g-~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 79 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAG-KPILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGSKFGVNIEYVVQEE 79 (217)
T ss_pred CEEecCCccccccccccCCCccccEECC-eeHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChhhcCceEEEEeCCC
Confidence 6899999999999999999999999998 59999999999999999999999999889999887532 1
Q ss_pred -------------------------------------HHHHHcCCCeEEEEe-------------cCC----cccCCC--
Q 015296 160 -------------------------------------KQLKAMKVDTTILGL-------------DDE----RAKEMP-- 183 (409)
Q Consensus 160 -------------------------------------e~~~~~~~d~til~~-------------~~~----~~~ekp-- 183 (409)
+.|...+.+.+++.. +++ .+.++|
T Consensus 80 ~~g~~~al~~~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~v~~~~ek~~~ 159 (217)
T cd04181 80 PLGTAGAVRNAEDFLGDDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVEDPSRYGVVELDDDGRVTRFVEKPTL 159 (217)
T ss_pred CCccHHHHHHhhhhcCCCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEEcCCCcEEEEEECCCC
Confidence 223333444444332 221 123444
Q ss_pred ---cEEEEEEEEEeHHHHHHHHhhcCCCCCcchhchHHHHHhCCCeEEEEEecCeEEEcC
Q 015296 184 ---YIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIG 240 (409)
Q Consensus 184 ---~~~~~Giyif~~~vl~~ll~~~~~~~~d~~~dli~~ll~~g~~V~a~~~~gyw~DIg 240 (409)
..+++|+|+|++++|+.+ +....+.+++..++++.++.+ .++.+|+++|||.|||
T Consensus 160 ~~~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~~~~~~~l~~~-~~v~~~~~~g~w~dig 217 (217)
T cd04181 160 PESNLANAGIYIFEPEILDYI-PEILPRGEDELTDAIPLLIEE-GKVYGYPVDGYWLDIG 217 (217)
T ss_pred CCCCEEEEEEEEECHHHHHhh-hhcCCcccccHHHHHHHHHhc-CCEEEEEcCCEEecCC
Confidence 688999999999998644 433223457788999999986 6899999999999997
No 48
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=9.4e-21 Score=178.63 Aligned_cols=166 Identities=22% Similarity=0.352 Sum_probs=130.6
Q ss_pred cCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHHH-------
Q 015296 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYA------- 159 (409)
Q Consensus 87 ~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~~------- 159 (409)
|+-+||||+|||.||||.|-|+..||.||||-+ +|+|+|+++.+.++||++|+++|+.+...|++||...|+
T Consensus 2 ~~irKAViPaAGlGTRfLPATKaiPKEMLPIvd-KP~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~ 80 (291)
T COG1210 2 MKIRKAVIPAAGLGTRFLPATKAIPKEMLPIVD-KPLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEK 80 (291)
T ss_pred CcccEEEEEccCcccccccccccCchhhccccC-chhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHH
Confidence 556899999999999999999999999999996 699999999999999999999999999999999987654
Q ss_pred ------------------------------------------------------------------HHHHHcCC------
Q 015296 160 ------------------------------------------------------------------KQLKAMKV------ 167 (409)
Q Consensus 160 ------------------------------------------------------------------e~~~~~~~------ 167 (409)
+.+...+.
T Consensus 81 ~~K~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi~v~ 160 (291)
T COG1210 81 RGKRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIGVE 160 (291)
T ss_pred hCHHHHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHhCCcEEEEE
Confidence 00011110
Q ss_pred --------CeEEEE----ecC-----CcccCCC-------cEEEEEEEEEeHHHHHHHHhhcCC--CCCcchhchHHHHH
Q 015296 168 --------DTTILG----LDD-----ERAKEMP-------YIASMGIYVISKDVMLNLLRDKFP--GANDFGSEVIPGAT 221 (409)
Q Consensus 168 --------d~til~----~~~-----~~~~ekp-------~~~~~Giyif~~~vl~~ll~~~~~--~~~d~~~dli~~ll 221 (409)
.++|+. .+. ..+.||| +++..|.|+|++++|+.| +...+ +.+-.++|.|..++
T Consensus 161 ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~APSnlai~GRYil~p~IFd~L-~~~~~G~ggEiQLTDai~~L~ 239 (291)
T COG1210 161 EVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDIL-EETKPGAGGEIQLTDAIKKLL 239 (291)
T ss_pred ECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCCCcceeeeeeeecCHHHHHHH-hhCCCCCCCEeeHHHHHHHHH
Confidence 011111 000 1234555 789999999999999855 44444 23334689999999
Q ss_pred hCCCeEEEEEecCeEEEcCCHHHHHHHHHhhccC
Q 015296 222 SIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK 255 (409)
Q Consensus 222 ~~g~~V~a~~~~gyw~DIgt~edy~~an~~ll~~ 255 (409)
++ ..+++|.++|..+|+|+...|.+|+.++..+
T Consensus 240 ~~-~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~ 272 (291)
T COG1210 240 KK-EPVLAYVFEGKRYDCGSKLGYIKANVEFALR 272 (291)
T ss_pred hh-CcEEEEEecccEEccCCcccHHHHHHHHHhh
Confidence 85 6899999999999999999999999888654
No 49
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.81 E-value=3.3e-19 Score=167.87 Aligned_cols=153 Identities=17% Similarity=0.231 Sum_probs=106.9
Q ss_pred EEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccCh---hhHHHHHHHH---HH------
Q 015296 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS---ASLNRHLSRA---YA------ 159 (409)
Q Consensus 92 aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~---~~i~~~l~~~---~~------ 159 (409)
.||||||+||||+|+|..+||||+|++|+ |||+|+|+++.++|++++++++++.. ..+.+++... ..
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 79 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLLAPNATVVELDG 79 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHhCCCCEEEEeCC
Confidence 48999999999999999999999999984 99999999999999999999986432 1122222110 00
Q ss_pred ---------------------------------------HHHHHcCCCeEEEEe------------cCC----cccCCC-
Q 015296 160 ---------------------------------------KQLKAMKVDTTILGL------------DDE----RAKEMP- 183 (409)
Q Consensus 160 ---------------------------------------e~~~~~~~d~til~~------------~~~----~~~ekp- 183 (409)
+.|.+.+.+.+++.+ +++ .+.+++
T Consensus 80 ~~~g~~~~l~~a~~~l~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~d~~~~v~~~~ek~~ 159 (231)
T cd04183 80 ETLGAACTVLLAADLIDNDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSSHPRWSYVKLDENGRVIETAEKEP 159 (231)
T ss_pred CCCcHHHHHHHHHhhcCCCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCCCCCeEEEEECCCCCEEEeEEcCC
Confidence 111122233333322 211 122332
Q ss_pred --cEEEEEEEEEeHH-HHHHHHhhc----C-CCCCcchhchHHHHHhCCCeEEEEEe-cCeEEEcCCHHHH
Q 015296 184 --YIASMGIYVISKD-VMLNLLRDK----F-PGANDFGSEVIPGATSIGMRVQAYLY-DGYWEDIGTIEAF 245 (409)
Q Consensus 184 --~~~~~Giyif~~~-vl~~ll~~~----~-~~~~d~~~dli~~ll~~g~~V~a~~~-~gyw~DIgt~edy 245 (409)
...++|+|+|+++ .|.++++.. . ...+.+..++++.++++|.+|.++.+ +++|.||||+++|
T Consensus 160 ~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 160 ISDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred CCCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 5789999999998 555544431 1 12234567999999998889999999 6999999999987
No 50
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=6e-17 Score=150.29 Aligned_cols=162 Identities=19% Similarity=0.251 Sum_probs=108.6
Q ss_pred cCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEc-ccChhhHHHHHHHH--------
Q 015296 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLT-QFNSASLNRHLSRA-------- 157 (409)
Q Consensus 87 ~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~-~~~~~~i~~~l~~~-------- 157 (409)
|+-|+|||||||.|+||+| ..||+|+.++| +++|+|+|++|++.|++++++|+ +|..+.+++++.+.
T Consensus 1 ~~~~kavILAAG~GsRlg~---~~PK~Lvev~g-r~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~~~~~~iv~ 76 (239)
T COG1213 1 MHPMKAVILAAGFGSRLGP---DIPKALVEVGG-REIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKYPFNAKIVI 76 (239)
T ss_pred CCceeEEEEecccccccCC---CCCchhhhcCC-eEeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcCCcceEEEe
Confidence 5678999999999999998 79999999997 59999999999999999999999 99999999998851
Q ss_pred ---HH------------------------------HHHHHc-C--CCeEEEE---------------ecCCcc------c
Q 015296 158 ---YA------------------------------KQLKAM-K--VDTTILG---------------LDDERA------K 180 (409)
Q Consensus 158 ---~~------------------------------e~~~~~-~--~d~til~---------------~~~~~~------~ 180 (409)
|. ..++.. . ....++. .+.... .
T Consensus 77 N~~y~ktN~~~Sl~~akd~~~~~fii~~sD~vye~~~~e~l~~a~~~~li~d~~~~~~~~~ea~kv~~e~G~i~~igK~l 156 (239)
T COG1213 77 NSDYEKTNTGYSLLLAKDYMDGRFILVMSDHVYEPSILERLLEAPGEGLIVDRRPRYVGVEEATKVKDEGGRIVEIGKDL 156 (239)
T ss_pred CCCcccCCceeEEeeehhhhcCcEEEEeCCEeecHHHHHHHHhCcCCcEEEeccccccccCceeEEEecCCEEehhcCCc
Confidence 11 111110 1 1111111 111111 1
Q ss_pred CCCcEEEEEEEEEeHHHHHHHHhhcCCCCCcchhchHHHHHhCCCeEEEEE--e-cCeEEEcCCHHHHHHHHHhhccC
Q 015296 181 EMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYL--Y-DGYWEDIGTIEAFYNANLGITKK 255 (409)
Q Consensus 181 ekp~~~~~Giyif~~~vl~~ll~~~~~~~~d~~~dli~~ll~~g~~V~a~~--~-~gyw~DIgt~edy~~an~~ll~~ 255 (409)
+......+|++.|+.++|..+.+........-.+++.+... ....-+. . ..+|.||+||||+.+|.+.+...
T Consensus 157 ~e~~~e~iGi~~l~~~i~~~~~~~~~e~~~~~~~~~~~~~~---~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~~ 231 (239)
T COG1213 157 TEYDGEDIGIFILSDSIFEDTYELLVERSEYDYREVEKEAG---LPFTEVDIHVDGLFWMEVDTPEDLERARKYLVPN 231 (239)
T ss_pred ccccceeeeeEEechHHHHHHHHHHhhhhhHHHHHHHHHhC---CceEEeeccccCceeEecCCHHHHHHHHHHHHHH
Confidence 23456789999999998876544322111111233444332 2222222 2 35899999999999999877643
No 51
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.71 E-value=3e-17 Score=159.36 Aligned_cols=67 Identities=25% Similarity=0.396 Sum_probs=58.7
Q ss_pred eEEEEEcCCCCCCCCCCcC-CCCCcceEeCCCcchHHHHHHhhhhC-CCceEEEEcccCh-hhHHHHHHH
Q 015296 90 VLGIILGGGAGTRLYPLTK-KRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSR 156 (409)
Q Consensus 90 m~aIILAaG~GtRl~Plt~-~~PK~LlPI~g~~pLI~~~l~~l~~~-Gi~~I~Vv~~~~~-~~i~~~l~~ 156 (409)
|++||||||.||||+|+|. .+||+|+|++|++|||+|+++++.+. ++++|+|++++.. +.+++++.+
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~ 70 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE 70 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh
Confidence 6899999999999999996 79999999998679999999999998 5999999999754 556666653
No 52
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.71 E-value=1.7e-16 Score=148.82 Aligned_cols=149 Identities=19% Similarity=0.263 Sum_probs=108.9
Q ss_pred EEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHH--------------
Q 015296 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRA-------------- 157 (409)
Q Consensus 92 aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~-------------- 157 (409)
|||||||.||||++ .+||+|+|++| +|||+|+|+++.++|+++++++++++.+.+.+++.+.
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~g-kpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 76 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAG-KPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALANPNVEFVLQEEQLGTG 76 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCC-ccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCCCCcEEEECCCCCCCH
Confidence 68999999999986 68999999998 5999999999999999999999999888887777530
Q ss_pred ---HH-------------------------------HHHHHcCCCeEEEE-------------ecC-C---cccCCC---
Q 015296 158 ---YA-------------------------------KQLKAMKVDTTILG-------------LDD-E---RAKEMP--- 183 (409)
Q Consensus 158 ---~~-------------------------------e~~~~~~~d~til~-------------~~~-~---~~~ekp--- 183 (409)
+. +.+.+.+.+.++.. .++ . ++.++|
T Consensus 77 ~ai~~a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~ek~~~~ 156 (229)
T cd02540 77 HAVKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRDGNGKVLRIVEEKDAT 156 (229)
T ss_pred HHHHHHHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCCccEEEEcCCCCEEEEEECCCCC
Confidence 00 11111123333221 111 1 122333
Q ss_pred ------cEEEEEEEEEeHHHHHHHHhhcCC---CCCcchhchHHHHHhCCCeEEEEEecCeE--EEcCCHHH
Q 015296 184 ------YIASMGIYVISKDVMLNLLRDKFP---GANDFGSEVIPGATSIGMRVQAYLYDGYW--EDIGTIEA 244 (409)
Q Consensus 184 ------~~~~~Giyif~~~vl~~ll~~~~~---~~~d~~~dli~~ll~~g~~V~a~~~~gyw--~DIgt~ed 244 (409)
+..++|+|+|+++.|.++++.... +.+.+..++++.++++|.+|+++.++||| +-|+|+.+
T Consensus 157 ~~~~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~ 228 (229)
T cd02540 157 EEEKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQ 228 (229)
T ss_pred hHHHhhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHh
Confidence 578999999999887666654321 24556789999999989999999999875 56777765
No 53
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.65 E-value=2.9e-15 Score=142.33 Aligned_cols=152 Identities=19% Similarity=0.204 Sum_probs=105.1
Q ss_pred ceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHHH---------
Q 015296 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYA--------- 159 (409)
Q Consensus 89 ~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~~--------- 159 (409)
.+.+||||+|.++||. +|+|+|++| +|||+|+++.+.++++++|+|++++ +.+.+++.+ +.
T Consensus 2 ~~~~iIlA~g~S~R~~------~K~Ll~i~G-kpll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~-~~~~v~~~~~~ 71 (245)
T PRK05450 2 KFLIIIPARYASTRLP------GKPLADIGG-KPMIVRVYERASKAGADRVVVATDD--ERIADAVEA-FGGEVVMTSPD 71 (245)
T ss_pred ceEEEEecCCCCCCCC------CCcccccCC-cCHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHH-cCCEEEECCCc
Confidence 4679999999999994 699999998 5999999999999999999998864 445555432 10
Q ss_pred ------------------------------------------HHHHHcCCCeEEEE------------------ecCC--
Q 015296 160 ------------------------------------------KQLKAMKVDTTILG------------------LDDE-- 177 (409)
Q Consensus 160 ------------------------------------------e~~~~~~~d~til~------------------~~~~-- 177 (409)
+.+...+.+..++. ++++
T Consensus 72 ~~~gt~~~~~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~g~ 151 (245)
T PRK05450 72 HPSGTDRIAEAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVVLDADGR 151 (245)
T ss_pred CCCchHHHHHHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEEeCCCCc
Confidence 11111112222221 2222
Q ss_pred --cccCCC---------------cEEEEEEEEEeHHHHHHHHhhcCCCCCcch--hchHHHHHhCCCeEEEEEecC-eEE
Q 015296 178 --RAKEMP---------------YIASMGIYVISKDVMLNLLRDKFPGANDFG--SEVIPGATSIGMRVQAYLYDG-YWE 237 (409)
Q Consensus 178 --~~~ekp---------------~~~~~Giyif~~~vl~~ll~~~~~~~~d~~--~dli~~ll~~g~~V~a~~~~g-yw~ 237 (409)
.+.++| .+.++|+|+|+++++..+.+. .....+.. .+. ..++++|.+|.++..+| +|.
T Consensus 152 v~~~~e~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~-~~~~~~~~~~~~~-~~~~~~g~~v~~~~~~~~~w~ 229 (245)
T PRK05450 152 ALYFSRAPIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSL-PPSPLEKIESLEQ-LRALENGYRIHVVVVEEAPSI 229 (245)
T ss_pred EEEecCCCCCCCCCccccccCccccEEEEEEecCHHHHHHHHhC-CCCccccchhHHH-HHHHHCCCceEEEEeCCCCCC
Confidence 122222 789999999999999877652 22111111 112 24677799999999996 999
Q ss_pred EcCCHHHHHHHHHhh
Q 015296 238 DIGTIEAFYNANLGI 252 (409)
Q Consensus 238 DIgt~edy~~an~~l 252 (409)
||||++||..|+..+
T Consensus 230 ~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 230 GVDTPEDLERVRALL 244 (245)
T ss_pred CcCCHHHHHHHHHHh
Confidence 999999999999754
No 54
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.64 E-value=1.8e-15 Score=157.35 Aligned_cols=56 Identities=25% Similarity=0.455 Sum_probs=52.2
Q ss_pred eEEEEEcCCCCCCCCCCcCC-CCCcceEeCCCcchHHHHHHhhhhCCCceEEEEccc
Q 015296 90 VLGIILGGGAGTRLYPLTKK-RAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF 145 (409)
Q Consensus 90 m~aIILAaG~GtRl~Plt~~-~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~ 145 (409)
|++||||||.||||+|||.. +||+|+|+.|++|||+|+++.+...++++++|+++.
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~ 57 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNE 57 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCH
Confidence 68999999999999999996 899999998767999999999999999999999984
No 55
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.62 E-value=1.4e-14 Score=137.17 Aligned_cols=149 Identities=20% Similarity=0.260 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhC-CCceEEEEcccChhhHHHHHHHHHH---------
Q 015296 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYA--------- 159 (409)
Q Consensus 90 m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~-Gi~~I~Vv~~~~~~~i~~~l~~~~~--------- 159 (409)
+.+||||+|.++||+ ||+|+|++| +|||+|+++++.++ |+++|+|++++ +.+.+++.+ |.
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~g-kpll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~-~~~~~~~~~~~ 71 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAG-KPMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES-FGGKVVMTSPD 71 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCC-cCHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH-cCCEEEEcCcc
Confidence 679999999999995 699999998 59999999999999 99999999874 456555542 10
Q ss_pred -----------------------------------------HHHHHc-CCCeEEEEe------------------cCC-c
Q 015296 160 -----------------------------------------KQLKAM-KVDTTILGL------------------DDE-R 178 (409)
Q Consensus 160 -----------------------------------------e~~~~~-~~d~til~~------------------~~~-~ 178 (409)
+.+... +.+.+++.. +++ .
T Consensus 72 ~~~gt~~~~~~~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 151 (239)
T cd02517 72 HPSGTDRIAEVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLDKDGY 151 (239)
T ss_pred cCchhHHHHHHHHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEECCCCC
Confidence 112111 233333221 111 1
Q ss_pred ---ccC--C----------CcEEEEEEEEEeHHHHHHHHhhcCCCCCcchhchHH--HHHhCCCeEEEEEecCeEEEcCC
Q 015296 179 ---AKE--M----------PYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIP--GATSIGMRVQAYLYDGYWEDIGT 241 (409)
Q Consensus 179 ---~~e--k----------p~~~~~Giyif~~~vl~~ll~~~~~~~~d~~~dli~--~ll~~g~~V~a~~~~gyw~DIgt 241 (409)
+.+ + ..++++|+|+|++++|..+.+.. . ......+.++ .++++|.++.++..+++|.||||
T Consensus 152 v~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t 229 (239)
T cd02517 152 ALYFSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFAALP-P-SPLEQIESLEQLRALENGYKIKVVETDHESIGVDT 229 (239)
T ss_pred EEEecCCCCCCCCCCCCCCceeEEEEEEEECHHHHHHHHhCC-C-chhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCC
Confidence 111 1 25899999999999998775531 1 1111234443 46777888999999999999999
Q ss_pred HHHHHHHHH
Q 015296 242 IEAFYNANL 250 (409)
Q Consensus 242 ~edy~~an~ 250 (409)
+++|..|++
T Consensus 230 ~~dl~~a~~ 238 (239)
T cd02517 230 PEDLERVEA 238 (239)
T ss_pred HHHHHHHHh
Confidence 999999874
No 56
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.58 E-value=4e-14 Score=133.92 Aligned_cols=150 Identities=15% Similarity=0.219 Sum_probs=103.6
Q ss_pred ceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhC-CCceEEEEcccChhhHHHHHHHHHH--------
Q 015296 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYA-------- 159 (409)
Q Consensus 89 ~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~-Gi~~I~Vv~~~~~~~i~~~l~~~~~-------- 159 (409)
.+.|||||+|.++||. +|+|+|++| +|||+|+++.+.++ ++++|+|++++ +.+.+++.+ |.
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~G-kPli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~-~~~~v~~~~~ 71 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILG-KPMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA-FGGKVVMTSD 71 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCC-cCHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH-cCCeEEecCc
Confidence 4679999999999994 499999998 59999999999999 89999999875 456665543 11
Q ss_pred ----------------------------------------HHHHHcCC-CeE-EE-----------------Eec-CC--
Q 015296 160 ----------------------------------------KQLKAMKV-DTT-IL-----------------GLD-DE-- 177 (409)
Q Consensus 160 ----------------------------------------e~~~~~~~-d~t-il-----------------~~~-~~-- 177 (409)
+.+...+. +.+ .+ .++ +.
T Consensus 72 ~~~~g~~~~~~a~~~~~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~v 151 (238)
T PRK13368 72 DHLSGTDRLAEVMLKIEADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKVVVDKNGDA 151 (238)
T ss_pred cCCCccHHHHHHHHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEEEECCCCCE
Confidence 12221111 111 11 111 11
Q ss_pred -cccCC-----------CcEEEEEEEEEeHHHHHHHHhhcCCCC-Ccchh-chHHHHHhCCCeEEEEEecCeEEEcCCHH
Q 015296 178 -RAKEM-----------PYIASMGIYVISKDVMLNLLRDKFPGA-NDFGS-EVIPGATSIGMRVQAYLYDGYWEDIGTIE 243 (409)
Q Consensus 178 -~~~ek-----------p~~~~~Giyif~~~vl~~ll~~~~~~~-~d~~~-dli~~ll~~g~~V~a~~~~gyw~DIgt~e 243 (409)
.+.++ .++.++|+|+|++++|..+ ....... .++.. +++ .+++.|.++.++..+++|.||||++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~n~giy~~~~~~l~~~-~~~~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~ 229 (238)
T PRK13368 152 LYFSRSPIPSRRDGESARYLKHVGIYAFRRDVLQQF-SQLPETPLEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPE 229 (238)
T ss_pred EEeeCCCCCCCCCCCCCceeEEEEEEEeCHHHHHHH-HcCCCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHH
Confidence 12221 1378999999999999865 3211111 11222 555 6776688899999999999999999
Q ss_pred HHHHHHH
Q 015296 244 AFYNANL 250 (409)
Q Consensus 244 dy~~an~ 250 (409)
||..|+.
T Consensus 230 Dl~~a~~ 236 (238)
T PRK13368 230 DLERVRA 236 (238)
T ss_pred HHHHHHH
Confidence 9999976
No 57
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.57 E-value=3.3e-15 Score=139.85 Aligned_cols=67 Identities=19% Similarity=0.379 Sum_probs=63.9
Q ss_pred eEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHH
Q 015296 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRA 157 (409)
Q Consensus 90 m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~ 157 (409)
++|||||||.||||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++++|+.+.
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~ 67 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKS 67 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhc
Confidence 5899999999999999999999999999985 999999999999999999999999999999999874
No 58
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.57 E-value=7e-15 Score=139.23 Aligned_cols=148 Identities=24% Similarity=0.255 Sum_probs=91.0
Q ss_pred cchhchHHHHHhCCCeEEEEEecCeEEEcCCHHHHHHHHHhhccCCCCCC---cccCCCCC-ccCCCcccCCceEecceE
Q 015296 211 DFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDF---SFYDRSAP-IYTQPRYLPPSKMLDADV 286 (409)
Q Consensus 211 d~~~dli~~ll~~g~~V~a~~~~gyw~DIgt~edy~~an~~ll~~~~~~~---~~~~~~~~-i~~~~~~~~p~~i~~~~i 286 (409)
+| .|.+|.|++.+ ++.++|||.|+ ++|+++|+++++...... ....+..+ +.....+.|.+.+.
T Consensus 29 ~~-~~~~~~~~~~~----~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~---- 96 (231)
T TIGR03532 29 DF-PESIKKFGSGH----SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIR---- 96 (231)
T ss_pred cc-chheEEEecCC----cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEe----
Confidence 45 68888888755 88999999999 999999999997642100 01111111 11222333333332
Q ss_pred EEEEECCCcEEcc-eEEe-ceEECCCCEECCCCEEe-ceEEeCCcccccccchhhhccCCCcceEeCCCCEEcc------
Q 015296 287 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE-DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR------ 357 (409)
Q Consensus 287 ~~~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~------ 357 (409)
.++.||++|.|+. +.|. +++||++|.|++++.|. +++|++++ .||.++.|.+
T Consensus 97 g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~-------------------~Ig~~~~I~~~~~~~~ 157 (231)
T TIGR03532 97 DQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNV-------------------HIGAGAVLAGVIEPPS 157 (231)
T ss_pred CCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCc-------------------EEcCCcEEcccccccc
Confidence 3467788888877 7776 78888888888888885 66666663 4666666643
Q ss_pred ---eEeCCCCEECCCcEEeCCCccCCceeecCCeE
Q 015296 358 ---AIIDKNARIGDNVKIVNSDSVQEAARETDGYF 389 (409)
Q Consensus 358 ---~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~ 389 (409)
++|++++.||.+++|..++.+++.+.++.|++
T Consensus 158 ~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~Igagsv 192 (231)
T TIGR03532 158 AKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAI 192 (231)
T ss_pred CCCeEECCCcEECCCCEEcCCCEECCCCEECCCCE
Confidence 55566666666665554444444433333333
No 59
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.56 E-value=5.4e-14 Score=126.02 Aligned_cols=117 Identities=15% Similarity=0.278 Sum_probs=96.7
Q ss_pred CcccCCceEe-cceEE-EEEECCCcEEcc-eEEe-ceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceE
Q 015296 273 PRYLPPSKML-DADVT-DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIG 348 (409)
Q Consensus 273 ~~~~~p~~i~-~~~i~-~~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~ 348 (409)
..+.+.+.+. ++.+. +++||++|.|++ |.|+ +++||++|.|++++.|.+++++++ +.
T Consensus 18 v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~-------------------~~ 78 (163)
T cd05636 18 VWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDG-------------------TK 78 (163)
T ss_pred eEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCC-------------------CE
Confidence 3333444443 34443 489999999988 9998 799999999999999999999876 46
Q ss_pred eCCCCEEcceEeCCCCEECCCcEEeC------------------------CCccCCceeecCCeEEeCCeEEEcCCcEeC
Q 015296 349 IGKNSHIKRAIIDKNARIGDNVKIVN------------------------SDSVQEAARETDGYFIKSGIVTIIKDALIP 404 (409)
Q Consensus 349 Ig~~~~I~~~ii~~n~~IG~~~~i~~------------------------~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip 404 (409)
|++++++.+++|++++.|++++.+.+ +..++++++++.++.|..| +.|+++++|+
T Consensus 79 I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g-~~ig~~~~i~ 157 (163)
T cd05636 79 VPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPG-VKIGPGSWVY 157 (163)
T ss_pred eccCCEEecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCC-cEECCCCEEC
Confidence 99999999999999999999999855 4577888888888888888 8899999999
Q ss_pred CCccC
Q 015296 405 SGTII 409 (409)
Q Consensus 405 ~gtvi 409 (409)
+|+++
T Consensus 158 agsvV 162 (163)
T cd05636 158 PGCVV 162 (163)
T ss_pred CCcEe
Confidence 99875
No 60
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.54 E-value=4.1e-14 Score=146.69 Aligned_cols=68 Identities=16% Similarity=0.347 Sum_probs=57.7
Q ss_pred ceEEEEEcCCCCCCCCCCcCC-CCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccC-hhhHHHHHHH
Q 015296 89 SVLGIILGGGAGTRLYPLTKK-RAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN-SASLNRHLSR 156 (409)
Q Consensus 89 ~m~aIILAaG~GtRl~Plt~~-~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~-~~~i~~~l~~ 156 (409)
.|.+||||||.||||||+|.. +||+|+|++|++|||+++++.+...++.+.+++|+.. .+.+++.+..
T Consensus 5 ~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~ 74 (478)
T PRK15460 5 KLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQ 74 (478)
T ss_pred ceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHh
Confidence 489999999999999999997 7999999987779999999999998888877888754 3555655543
No 61
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.53 E-value=9.4e-15 Score=130.89 Aligned_cols=68 Identities=24% Similarity=0.435 Sum_probs=62.2
Q ss_pred eEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHHH
Q 015296 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYA 159 (409)
Q Consensus 90 m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~~ 159 (409)
|.|||||||.||||.|||...||+|+.|.|. |||+++|+.|.++||++|.||+||..+++ +||.+.|.
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkdKy~ 68 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKDKYD 68 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHHhcC
Confidence 6799999999999999999999999999984 99999999999999999999999998877 56666443
No 62
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.52 E-value=1.8e-13 Score=113.71 Aligned_cols=103 Identities=35% Similarity=0.572 Sum_probs=89.4
Q ss_pred CceEe-cceEEEEEECCCcEEcceEEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEc
Q 015296 278 PSKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK 356 (409)
Q Consensus 278 p~~i~-~~~i~~~~Ig~g~~I~~~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~ 356 (409)
|+.+. ++.+.+++||++|.|+++.|++|+||++|.|+++|.|.+++++++ +.||+++.+.
T Consensus 1 p~~i~~~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~-------------------~~Ig~~~~i~ 61 (104)
T cd04651 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN-------------------VGIGRNAVIR 61 (104)
T ss_pred CceecCCCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCC-------------------CEECCCCEEE
Confidence 34555 677899999999999989999999999999999999999999987 4699999999
Q ss_pred ceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEe
Q 015296 357 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALI 403 (409)
Q Consensus 357 ~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~I 403 (409)
+|+|++++.||+++.+.+.....+. +++++.+|+++|++++++
T Consensus 62 ~siig~~~~Ig~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 104 (104)
T cd04651 62 RAIIDKNVVIPDGVVIGGDPEEDRA----RFYVTEDGIVVVGKGMVI 104 (104)
T ss_pred eEEECCCCEECCCCEECCCcccccc----cceEcCCeEEEEecccCC
Confidence 9999999999999999877544332 678889998899888753
No 63
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.50 E-value=3.8e-13 Score=131.05 Aligned_cols=170 Identities=22% Similarity=0.247 Sum_probs=97.1
Q ss_pred cCCHHHHHHHHHhhccCCCC------CCcccCCCCCccCCCcccCCceEe-cceEE-------EEEECCCcEEcc-eEEe
Q 015296 239 IGTIEAFYNANLGITKKPIP------DFSFYDRSAPIYTQPRYLPPSKML-DADVT-------DSVIGEGCVIKN-CKIH 303 (409)
Q Consensus 239 Igt~edy~~an~~ll~~~~~------~~~~~~~~~~i~~~~~~~~p~~i~-~~~i~-------~~~Ig~g~~I~~-~~I~ 303 (409)
..+|.-.+....+++.+... ....+++++.+..++.+.|.+.|. ++.|+ +++||++|.||+ |.|.
T Consensus 78 ~~~P~~~fA~~~~~f~~~~~~~~~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~ 157 (338)
T COG1044 78 VKDPYLAFAKVAQLFYRPFNPAAGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIH 157 (338)
T ss_pred eCCchHHHHHHHHHhccCCccccccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEc
Confidence 34465555555555543311 234556666666666555565555 44443 255555555555 5555
Q ss_pred -ceEECCCCEECCCCEEeceEEeCCcccccc--cc-hhhhccCCCcc----eEeCCCCEEcc-----------------e
Q 015296 304 -HSVVGLRSCISEGAIIEDTLLMGADYYETD--AD-RRFLAAKGSVP----IGIGKNSHIKR-----------------A 358 (409)
Q Consensus 304 -~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~--~~-~~~~~~~g~~~----v~Ig~~~~I~~-----------------~ 358 (409)
|++|+.++.||++|.|+...+.+.+-|+.- .. +....+.|.|. |.||.|++|.+ +
T Consensus 158 ~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~v 237 (338)
T COG1044 158 PNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLV 237 (338)
T ss_pred CCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceeceEEECCceEEcccceeccccccCceecCCcEEccee
Confidence 555556666666666654333333322111 11 13333333322 35666666653 3
Q ss_pred EeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCccC
Q 015296 359 IIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 409 (409)
Q Consensus 359 ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtvi 409 (409)
-|++||+||++|.|.+++++...+.+|+.|.|++. |.|..+..|.+++.|
T Consensus 238 qIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~-vgI~gh~~IgD~~~I 287 (338)
T COG1044 238 QIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQ-VGIAGHLEIGDGVTI 287 (338)
T ss_pred EEccccEECCCcEEeccceeeccceECCeEEECcc-eeecCceEEcCCCEE
Confidence 34567888888888888888888888888888777 777777777777654
No 64
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.50 E-value=2.7e-13 Score=130.32 Aligned_cols=144 Identities=20% Similarity=0.171 Sum_probs=86.7
Q ss_pred ccCCCCCccCCCcccCCceEecceEEEEEECCCcEEcc-eEEe-ceEECCCCEECCCCEEe-------------ceEEeC
Q 015296 262 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE-------------DTLLMG 326 (409)
Q Consensus 262 ~~~~~~~i~~~~~~~~p~~i~~~~i~~~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~-------------~s~i~~ 326 (409)
++++++.+...+.+.|.+.+. .++.||++|.|++ |.|. +++||++|.|+++|.|+ +..|++
T Consensus 7 ~I~~~a~ig~~~~I~p~~~I~----~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~ 82 (254)
T cd03351 7 IVDPGAKIGENVEIGPFCVIG----PNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGD 82 (254)
T ss_pred EECCCCEECCCCEECCCcEEC----CCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECC
Confidence 344444444444444444332 2466777777777 7776 67888888888887775 455666
Q ss_pred CcccccccchhhhccCCCcceEeCCCCEEc-ceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCe-----EEEcCC
Q 015296 327 ADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKD 400 (409)
Q Consensus 327 ~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~-~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~-----v~i~~~ 400 (409)
++.+++++....-...+...+.||+++.|. ++.|++++.||++|.|.+...+.+.+.++++++|+.+. +.|+++
T Consensus 83 ~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~ 162 (254)
T cd03351 83 NNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRH 162 (254)
T ss_pred CCEECCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCC
Confidence 666665544211111111125788888884 67777777777777777776666666666666665551 456666
Q ss_pred cEeCCCccC
Q 015296 401 ALIPSGTII 409 (409)
Q Consensus 401 ~~Ip~gtvi 409 (409)
++|+++++|
T Consensus 163 ~~Ig~~s~V 171 (254)
T cd03351 163 AMVGGGSGV 171 (254)
T ss_pred CEECcCCEE
Confidence 666666553
No 65
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.49 E-value=2.8e-13 Score=130.96 Aligned_cols=67 Identities=25% Similarity=0.416 Sum_probs=57.0
Q ss_pred ceEEEEEcCCCCCCCCCCcC-CCCCcceEeCCCcchHHHHHHhhhh-CCCceEEEEcccCh-hhHHHHHH
Q 015296 89 SVLGIILGGGAGTRLYPLTK-KRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNS-ASLNRHLS 155 (409)
Q Consensus 89 ~m~aIILAaG~GtRl~Plt~-~~PK~LlPI~g~~pLI~~~l~~l~~-~Gi~~I~Vv~~~~~-~~i~~~l~ 155 (409)
+|++||||||+|||||||+. .+||+++++.++..|++.++..+.. .+.++++|+|+... ..+.+.|.
T Consensus 1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~ 70 (333)
T COG0836 1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLP 70 (333)
T ss_pred CceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHh
Confidence 37899999999999999977 5899999998878999999999998 57899999999654 34455444
No 66
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.48 E-value=7.6e-13 Score=131.41 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=31.8
Q ss_pred eEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCc
Q 015296 358 AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGT 407 (409)
Q Consensus 358 ~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gt 407 (409)
+.|++|++||++|.|.+++.+...+++|++++++++ +.|..++.|++++
T Consensus 230 v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~-~~I~~~v~Ig~~~ 278 (324)
T TIGR01853 230 VQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQ-VGVAGHLEIGDNV 278 (324)
T ss_pred cEECCCCEECCCcEECCcceEcCccEECCCeEEccc-cccccCCEECCCC
Confidence 455677777777777777777777777777777666 4444444444433
No 67
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.47 E-value=5.9e-13 Score=127.95 Aligned_cols=143 Identities=20% Similarity=0.208 Sum_probs=80.4
Q ss_pred ccCCCCCccCCCcccCCceEecceEEEEEECCCcEEcc-eEEe-ceEECCCCEECCCCEEe-------------ceEEeC
Q 015296 262 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE-------------DTLLMG 326 (409)
Q Consensus 262 ~~~~~~~i~~~~~~~~p~~i~~~~i~~~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~-------------~s~i~~ 326 (409)
++++.+.+.+.+.+.|.+.+. .++.|+++|+|++ |.|. +++||++|.|++++.|+ +..|++
T Consensus 6 ~I~~~a~Ig~~~~I~~~~~I~----~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~ 81 (254)
T TIGR01852 6 IIEPGAEIGENVEIGPFCIVG----PGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGD 81 (254)
T ss_pred EeCCCCEECCCCEECCCCEEC----CCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECC
Confidence 344444444444444444433 2356666666666 6666 67777777777777775 355666
Q ss_pred CcccccccchhhhccCCCcceEeCCCCEEc-ceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCe-----EEEcCC
Q 015296 327 ADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKD 400 (409)
Q Consensus 327 ~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~-~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~-----v~i~~~ 400 (409)
+++++.++....-...+...+.||++++|. ++.|+.++.||++|.|.++..+.+.+.++++++|+.+. +.|+++
T Consensus 82 ~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~ 161 (254)
T TIGR01852 82 NNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRY 161 (254)
T ss_pred CCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCC
Confidence 666665543211111111235777777773 55565566666666665555555555555555555551 456666
Q ss_pred cEeCCCcc
Q 015296 401 ALIPSGTI 408 (409)
Q Consensus 401 ~~Ip~gtv 408 (409)
++|+++++
T Consensus 162 ~~Ig~~s~ 169 (254)
T TIGR01852 162 AMIGGLSA 169 (254)
T ss_pred CEEeeeee
Confidence 66666654
No 68
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.47 E-value=7.2e-13 Score=121.88 Aligned_cols=122 Identities=24% Similarity=0.247 Sum_probs=76.6
Q ss_pred ceEEEEEECCCcEEcc-eEEeceEECCCCEECCCCEEe-ceEEeCCcccccccc-hhhhccCCCcceEeCCCCEEcceEe
Q 015296 284 ADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIE-DTLLMGADYYETDAD-RRFLAAKGSVPIGIGKNSHIKRAII 360 (409)
Q Consensus 284 ~~i~~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~-~~~~~~~g~~~v~Ig~~~~I~~~ii 360 (409)
+.+.++.|+++|.|+. |.+++++|+.++.|++++.|. ++.|.+++.++...+ +...+.++. .|++.+++.+++|
T Consensus 46 ~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~~~---~i~~~~~i~~~~I 122 (193)
T cd03353 46 CVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGS---KANHLSYLGDAEI 122 (193)
T ss_pred cEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceEcCCC---EecccceecccEE
Confidence 3344556666666665 666666666666666666665 344444444443332 122233332 4555566667888
Q ss_pred CCCCEECCCcEEeCC-------CccCCceeecCCeEEeCCeEEEcCCcEeCCCccC
Q 015296 361 DKNARIGDNVKIVNS-------DSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 409 (409)
Q Consensus 361 ~~n~~IG~~~~i~~~-------~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtvi 409 (409)
++++.||+++.+.+. ..++++++++.++.+..+ +.|++++.|++|+++
T Consensus 123 g~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~-~~Ig~~~~i~~gs~V 177 (193)
T cd03353 123 GEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAP-VTIGDGATIAAGSTI 177 (193)
T ss_pred CCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCC-cEECCCcEECCCCEE
Confidence 888888888888653 346667777777777777 789999999999874
No 69
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.46 E-value=5.6e-13 Score=128.71 Aligned_cols=121 Identities=20% Similarity=0.210 Sum_probs=77.9
Q ss_pred EEEECCCcEEcc-eEEe-ceEECCCCEECCCCEEec-------------eEEeCCcccccccchh-hhccCCCcceEeCC
Q 015296 288 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED-------------TLLMGADYYETDADRR-FLAAKGSVPIGIGK 351 (409)
Q Consensus 288 ~~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~-------------s~i~~~~~~~~~~~~~-~~~~~g~~~v~Ig~ 351 (409)
++.||++|.|++ |.|. +++||++|.|+++|.|+. ..|++++.+++++... .....+ ..+.||+
T Consensus 32 ~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~-~~t~IG~ 110 (262)
T PRK05289 32 NVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGG-GVTRIGD 110 (262)
T ss_pred CCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCC-CeeEECC
Confidence 477888888887 7777 788888888888888864 6677777777665422 111111 1246777
Q ss_pred CCEEc-ceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCe-----EEEcCCcEeCCCccC
Q 015296 352 NSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGTII 409 (409)
Q Consensus 352 ~~~I~-~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~-----v~i~~~~~Ip~gtvi 409 (409)
++.|. ++.|+.+|.||+++.+.++..+...+.++++++|+.+. +.||++++|++||+|
T Consensus 111 ~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V 174 (262)
T PRK05289 111 NNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGV 174 (262)
T ss_pred ceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECCCCEEeeecce
Confidence 77773 55566666666666665555555555555555554441 567888888777764
No 70
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.43 E-value=1.9e-12 Score=124.41 Aligned_cols=118 Identities=21% Similarity=0.282 Sum_probs=83.9
Q ss_pred EEEECCCcEEcc-eEEe-ceEECCCCEECCCCEEec-------------eEEeCCcccccccch-hhhccCCCcceEeCC
Q 015296 288 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED-------------TLLMGADYYETDADR-RFLAAKGSVPIGIGK 351 (409)
Q Consensus 288 ~~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~-------------s~i~~~~~~~~~~~~-~~~~~~g~~~v~Ig~ 351 (409)
++.||++|+|+. |.|. ++.||++|.|++++.|+. ..|++++.+.++... .+....+. +.||+
T Consensus 29 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI~~gt~~g~~--t~IG~ 106 (255)
T PRK12461 29 NVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIHRGTKGGGV--TRIGN 106 (255)
T ss_pred CCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEEecCcccCCc--EEEcc
Confidence 467788888877 7777 788888888888888863 456666666666542 22222222 57888
Q ss_pred CCEEc-ceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEE------EcCCcEeCCCcc
Q 015296 352 NSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVT------IIKDALIPSGTI 408 (409)
Q Consensus 352 ~~~I~-~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~------i~~~~~Ip~gtv 408 (409)
++.|. ++.|+++|.||++|+|.+++.+...++++++++|+.+ +. |+++++|+++++
T Consensus 107 ~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~-a~V~~~~~IG~~a~Vg~gs~ 169 (255)
T PRK12461 107 DNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGN-CLVHQFCRIGALAMMAGGSR 169 (255)
T ss_pred cceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCC-CEECCCCEECCCcEECCCce
Confidence 88885 7888888888888888888888888888888888777 44 555555555544
No 71
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.42 E-value=3.8e-12 Score=127.56 Aligned_cols=59 Identities=22% Similarity=0.242 Sum_probs=35.5
Q ss_pred eCCCCEEc-ceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCcc
Q 015296 349 IGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 408 (409)
Q Consensus 349 Ig~~~~I~-~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtv 408 (409)
||+++.|. .+.|++|++||++|.|..++.+...+++|++++|+.+ +.|..+++|+++++
T Consensus 228 Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~-~~i~~~~~ig~~~~ 287 (343)
T PRK00892 228 IGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQ-VGIAGHLEIGDGVT 287 (343)
T ss_pred eCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCC-CEEcCCCEECCCCE
Confidence 44444443 3455667777777777777777777777777777666 44444444444443
No 72
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.39 E-value=6e-13 Score=124.64 Aligned_cols=67 Identities=24% Similarity=0.445 Sum_probs=63.2
Q ss_pred eEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHH
Q 015296 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRA 157 (409)
Q Consensus 90 m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~ 157 (409)
|+|||||||.|+||+|+|..+||+|+|++| +|||+|++++|.++|+++|+|+++++.+.+.+|+.+.
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g-~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~ 67 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVAN-VPLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKS 67 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECC-EEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhc
Confidence 589999999999999999999999999997 5999999999999999999999999998888888764
No 73
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.37 E-value=8e-13 Score=123.59 Aligned_cols=66 Identities=27% Similarity=0.465 Sum_probs=59.3
Q ss_pred eEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccCh-hhHHHHHHH
Q 015296 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS-ASLNRHLSR 156 (409)
Q Consensus 90 m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~-~~i~~~l~~ 156 (409)
|+|||||||.|+||+|+|..+||+|+|++| +|||+|++++|.++|+++|+|++++.. +.+++++.+
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g-~pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~ 67 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVAN-KPMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRS 67 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECC-eeHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHh
Confidence 689999999999999999999999999997 599999999999999999999999754 456666653
No 74
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.36 E-value=7.9e-12 Score=120.12 Aligned_cols=105 Identities=21% Similarity=0.236 Sum_probs=71.0
Q ss_pred EEEECCCcEEcc-eEEe-------------ceEECCCCEECCCCEEec--------eEEeCCcccccccchhhhccCCCc
Q 015296 288 DSVIGEGCVIKN-CKIH-------------HSVVGLRSCISEGAIIED--------TLLMGADYYETDADRRFLAAKGSV 345 (409)
Q Consensus 288 ~~~Ig~g~~I~~-~~I~-------------~svIg~~~~Ig~~~~I~~--------s~i~~~~~~~~~~~~~~~~~~g~~ 345 (409)
++.||++|.|++ |.|. +++||++|.|+++|.|.. +.|++++.+...+. +.+++
T Consensus 47 ~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~----I~~~~- 121 (254)
T cd03351 47 PTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVH----VAHDC- 121 (254)
T ss_pred CeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCceEECCCCEECCCCE----ECCCC-
Confidence 377777887777 7775 577888888888888864 44555554443332 11222
Q ss_pred ceEeCCCCEEc-ceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCC
Q 015296 346 PIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKD 400 (409)
Q Consensus 346 ~v~Ig~~~~I~-~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~ 400 (409)
.||+++.|. ++.+..++.||++|+|.+++.+...++++++++|+.+ .+|-++
T Consensus 122 --~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~-s~V~~~ 174 (254)
T cd03351 122 --VIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGG-SGVVQD 174 (254)
T ss_pred --EECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcC-CEEeee
Confidence 466666664 5666677888888888888888888888888888888 444444
No 75
>PLN02296 carbonate dehydratase
Probab=99.34 E-value=1.1e-11 Score=119.66 Aligned_cols=117 Identities=17% Similarity=0.403 Sum_probs=80.0
Q ss_pred ccCCCCCccCCCcccCCceEecceEEEEEECCCcEEcc-eEEe-c---eEECCCCEECCCCEEe-----------ceEEe
Q 015296 262 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-H---SVVGLRSCISEGAIIE-----------DTLLM 325 (409)
Q Consensus 262 ~~~~~~~i~~~~~~~~p~~i~~~~i~~~~Ig~g~~I~~-~~I~-~---svIg~~~~Ig~~~~I~-----------~s~i~ 325 (409)
+++....+.+...+.|.+.+. +++.||++|.|.. |.|. . ++||++|.|+++|.|. +++|+
T Consensus 48 ~~~~~p~I~~~~~I~p~A~V~----G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG 123 (269)
T PLN02296 48 IFDKAPVVDKDAFVAPSASVI----GDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIG 123 (269)
T ss_pred hcCCCCccCCCCEECCCcEEE----cceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeC
Confidence 344444555566666666554 4678888888887 8777 3 4899999999999996 34454
Q ss_pred CCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCC
Q 015296 326 GADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPS 405 (409)
Q Consensus 326 ~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~ 405 (409)
++ +.||+++.|++|+|+++|.||.+++|..+ ++++++++|+.| .+|.++++||+
T Consensus 124 ~~-------------------v~IG~~avI~g~~Igd~v~IG~ga~I~~g------v~Ig~~a~Igag-SvV~~~~~I~~ 177 (269)
T PLN02296 124 DN-------------------VTIGHSAVLHGCTVEDEAFVGMGATLLDG------VVVEKHAMVAAG-ALVRQNTRIPS 177 (269)
T ss_pred CC-------------------CEECCCceecCCEECCCcEECCCcEECCC------eEECCCCEECCC-CEEecCCEeCC
Confidence 44 35777777777777777777777777654 555566666666 56666666666
Q ss_pred Ccc
Q 015296 406 GTI 408 (409)
Q Consensus 406 gtv 408 (409)
+++
T Consensus 178 ~~~ 180 (269)
T PLN02296 178 GEV 180 (269)
T ss_pred CeE
Confidence 654
No 76
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.33 E-value=1.7e-11 Score=112.95 Aligned_cols=102 Identities=18% Similarity=0.393 Sum_probs=75.6
Q ss_pred ccCCCcccCCceEecceEEEEEECCCcEEcc-eEEe----ceEECCCCEECCCCEE-----eceEEeCCcccccccchhh
Q 015296 269 IYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH----HSVVGLRSCISEGAII-----EDTLLMGADYYETDADRRF 338 (409)
Q Consensus 269 i~~~~~~~~p~~i~~~~i~~~~Ig~g~~I~~-~~I~----~svIg~~~~Ig~~~~I-----~~s~i~~~~~~~~~~~~~~ 338 (409)
|.+++.+.|.+.+. +++.||++|.|+. |+|. .++||++|.|+++|.| .+++|+++
T Consensus 11 i~~~~~I~~~a~I~----G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~----------- 75 (192)
T TIGR02287 11 VHPEAYVHPTAVLI----GDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEEN----------- 75 (192)
T ss_pred CCCCcEECCCCEEE----eeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCC-----------
Confidence 44444444445443 5688999999998 8886 4799999999999999 45777766
Q ss_pred hccCCCcceEeCCCCEEcceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCC
Q 015296 339 LAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 393 (409)
Q Consensus 339 ~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g 393 (409)
+.||+++.|++|+|++++.||.++.+.++..+++.+.++.|++|..+
T Consensus 76 --------~~Ig~~a~I~~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~ 122 (192)
T TIGR02287 76 --------GHVGHGAILHGCIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAG 122 (192)
T ss_pred --------CEECCCCEEcCCEECCCCEECCCcccCCCeEECCCCEEcCCCEECCC
Confidence 36899999999999999999999888776655555555555444444
No 77
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.32 E-value=1.8e-11 Score=117.70 Aligned_cols=112 Identities=20% Similarity=0.210 Sum_probs=82.8
Q ss_pred EEEEECCCcEEcc-eEEe-------------ceEECCCCEECCCCEEece--------EEeCCcccccccchhhhccCCC
Q 015296 287 TDSVIGEGCVIKN-CKIH-------------HSVVGLRSCISEGAIIEDT--------LLMGADYYETDADRRFLAAKGS 344 (409)
Q Consensus 287 ~~~~Ig~g~~I~~-~~I~-------------~svIg~~~~Ig~~~~I~~s--------~i~~~~~~~~~~~~~~~~~~g~ 344 (409)
.++.||++|+|++ +.|. +++||++|.|+++|.|... .|++++++..++. +.+++
T Consensus 45 ~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~----I~~~~ 120 (254)
T TIGR01852 45 GHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSH----IAHDC 120 (254)
T ss_pred eeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCE----EccCC
Confidence 3588899999988 8886 5889999999999999743 5555555544432 22332
Q ss_pred cceEeCCCCEEc-ceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCcc
Q 015296 345 VPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 408 (409)
Q Consensus 345 ~~v~Ig~~~~I~-~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtv 408 (409)
.||+++.|. ++.+..++.||++|+|..++.+...++++++++|+.+ .+|-++ ||++++
T Consensus 121 ---~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~-s~V~~~--i~~~~~ 179 (254)
T TIGR01852 121 ---VVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGL-SAVSKD--VPPYGL 179 (254)
T ss_pred ---EECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeee-eeEeee--cCCCcE
Confidence 577777775 6778888888888888888888889999999999999 444444 565543
No 78
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.32 E-value=2.6e-11 Score=107.88 Aligned_cols=97 Identities=25% Similarity=0.397 Sum_probs=76.6
Q ss_pred EEEEECCCcEEcc-eEEec----eEECCCCEECCCCEE-----eceEEeCCcccccccchhhhccCCCcceEeCCCCEEc
Q 015296 287 TDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAII-----EDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK 356 (409)
Q Consensus 287 ~~~~Ig~g~~I~~-~~I~~----svIg~~~~Ig~~~~I-----~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~ 356 (409)
.++.||++|+|++ |.|.+ ++||++|.|+++|.| ++++|+++ +.|++++.+.
T Consensus 17 g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~-------------------~~Ig~~~~i~ 77 (155)
T cd04745 17 GDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEEN-------------------GHIGHGAILH 77 (155)
T ss_pred ccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCC-------------------CEECCCcEEE
Confidence 4578999999998 88874 899999999999999 56777776 3689999999
Q ss_pred ceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEe
Q 015296 357 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALI 403 (409)
Q Consensus 357 ~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~I 403 (409)
+++|++++.||.++.|..+..+++.+.++.++++..+ +.|++++++
T Consensus 78 ~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~-~~i~~~~~v 123 (155)
T cd04745 78 GCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAG-TVIPPRSLI 123 (155)
T ss_pred CCEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCC-CEeCCCCEE
Confidence 9999999999999999877766666666666655555 445555443
No 79
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.31 E-value=2e-11 Score=109.85 Aligned_cols=118 Identities=17% Similarity=0.226 Sum_probs=71.9
Q ss_pred CCcccCCceEecceEEEEEECCCcEEcc-eEEe----ceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcc
Q 015296 272 QPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH----HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVP 346 (409)
Q Consensus 272 ~~~~~~p~~i~~~~i~~~~Ig~g~~I~~-~~I~----~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~ 346 (409)
.+.+.|.+.+. .++.||++|+|++ |.|. .++||++|.|+++|.|.++..+...+ . ....+++++
T Consensus 5 ~~~I~~~a~i~----g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~-~----~~v~IG~~~-- 73 (164)
T cd04646 5 GAVVCQESEIR----GDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAE-P----KPMIIGSNN-- 73 (164)
T ss_pred CcEECCCCEEc----CceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCC-C----CCeEECCCC--
Confidence 33444444443 4578999999998 8885 46999999999999998876643210 0 000111111
Q ss_pred eEeCCCCEEcceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCcc
Q 015296 347 IGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 408 (409)
Q Consensus 347 v~Ig~~~~I~~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtv 408 (409)
.|+.+++|.+++|+++|.||.+++|..+ +.++++++|+.+ .+|.++..||++++
T Consensus 74 -~i~~~~~i~~~~IGd~~~Ig~~a~I~~g------v~Ig~~~~Igag-svV~~~~~i~~~~v 127 (164)
T cd04646 74 -VFEVGCKCEALKIGNNNVFESKSFVGKN------VIITDGCIIGAG-CKLPSSEILPENTV 127 (164)
T ss_pred -EECCCcEEEeeEECCCCEEeCCCEECCC------CEECCCCEEeCC-eEECCCcEECCCeE
Confidence 3445566666666777777777666554 455555555555 55555556665554
No 80
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.31 E-value=2.2e-11 Score=112.02 Aligned_cols=138 Identities=25% Similarity=0.326 Sum_probs=83.1
Q ss_pred CCCCCccCCCcccCCceEecceEEEEEECCCcEEcc-eEEeceEECCCCEECCCCEEeceEEeCCcccccccch--hhhc
Q 015296 264 DRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADR--RFLA 340 (409)
Q Consensus 264 ~~~~~i~~~~~~~~p~~i~~~~i~~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~--~~~~ 340 (409)
++...+....++.|.+.+. .++.||++|+|++ |.|.+++||++|.|++++.|+++++++++.++.+... ...+
T Consensus 13 ~~~v~ig~~~~I~~~a~i~----~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~I 88 (193)
T cd03353 13 DGDVEIGVDVVIDPGVILE----GKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVL 88 (193)
T ss_pred cCCeEECCCcEECCCCEEe----CcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEE
Confidence 3333344444444444443 3578999999998 9999889999999999999999988887665544331 1223
Q ss_pred cCCCcceEeCCCCEEcceEeCCCCEE-----------CCCcEEeCCCccC-------CceeecCCeEEeCCeEEEcCCcE
Q 015296 341 AKGSVPIGIGKNSHIKRAIIDKNARI-----------GDNVKIVNSDSVQ-------EAARETDGYFIKSGIVTIIKDAL 402 (409)
Q Consensus 341 ~~g~~~v~Ig~~~~I~~~ii~~n~~I-----------G~~~~i~~~~~v~-------~~~~~~~g~~i~~g~v~i~~~~~ 402 (409)
+++. .|++++.+++++|++++.| |++|.|..++.+. ..+.++++++|+.+ ++|.++++
T Consensus 89 g~~~---~Ig~~~~i~~s~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~-~~i~~~~~ 164 (193)
T cd03353 89 GEGV---HIGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSN-SQLVAPVT 164 (193)
T ss_pred CCCC---EECCcEEEecceEcCCCEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccC-CEEeCCcE
Confidence 3332 4555555555555554433 3333333333221 12345666666666 56666677
Q ss_pred eCCCccC
Q 015296 403 IPSGTII 409 (409)
Q Consensus 403 Ip~gtvi 409 (409)
|+++++|
T Consensus 165 Ig~~~~i 171 (193)
T cd03353 165 IGDGATI 171 (193)
T ss_pred ECCCcEE
Confidence 7777654
No 81
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.28 E-value=5.3e-11 Score=110.33 Aligned_cols=118 Identities=26% Similarity=0.353 Sum_probs=57.4
Q ss_pred EEEECCCcEEcc-eEEe-ceEECCCCEECCCCEEe--------------------ceEEeCCcccccccchhhhccCCCc
Q 015296 288 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE--------------------DTLLMGADYYETDADRRFLAAKGSV 345 (409)
Q Consensus 288 ~~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~--------------------~s~i~~~~~~~~~~~~~~~~~~g~~ 345 (409)
++.||++|+|+. +.|. +++||++|.|++++.|. +..|+++.+++.......-. ...
T Consensus 37 ~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~-~~~- 114 (205)
T cd03352 37 GVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLGGVIIGDDVEIGANTTIDRGA-LGD- 114 (205)
T ss_pred CCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEEcCCcceEEECCCEEECCCCEEeccc-cCC-
Confidence 355566666655 5555 46666666666666553 23333333333332211000 011
Q ss_pred ceEeCCCCEEc-ceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCe-----EEEcCCcEeCCCcc
Q 015296 346 PIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGTI 408 (409)
Q Consensus 346 ~v~Ig~~~~I~-~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~-----v~i~~~~~Ip~gtv 408 (409)
+.||+++.|. ++.|+.+++||+++.|.+.+.+...+.++++++|+.+. +.|++++.|+++++
T Consensus 115 -~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~~~~ig~~~~i~~~s~ 182 (205)
T cd03352 115 -TVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTIGDGVVIGAGSG 182 (205)
T ss_pred -eEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCEEeCCcEECCCCEEcCCCE
Confidence 2455555553 44555555555555555444444444444444444441 45666666666654
No 82
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.27 E-value=3.5e-11 Score=116.21 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=11.9
Q ss_pred CEECCCcEEeCCCccCCceeecCCeEEeCC
Q 015296 364 ARIGDNVKIVNSDSVQEAARETDGYFIKSG 393 (409)
Q Consensus 364 ~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g 393 (409)
+.||++|+|...+.+...++++++++|+.|
T Consensus 142 v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~g 171 (262)
T PRK05289 142 VEVGDYAIIGGLTAVHQFVRIGAHAMVGGM 171 (262)
T ss_pred cccCCcEEEeecceecCCCEECCCCEEeee
Confidence 333333333333333333444444444443
No 83
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.26 E-value=2.6e-11 Score=125.23 Aligned_cols=143 Identities=24% Similarity=0.261 Sum_probs=93.0
Q ss_pred cCCCCCccCCCcccCCceEe-cceEEEEEECCCcEEcc-eEEeceEECCCCEECCCCEEec-eEEeCCcccccccch-hh
Q 015296 263 YDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIED-TLLMGADYYETDADR-RF 338 (409)
Q Consensus 263 ~~~~~~i~~~~~~~~p~~i~-~~~i~~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~-s~i~~~~~~~~~~~~-~~ 338 (409)
+.+.+.+.....+.+.+.|. ++.+.++.|+++|.|++ |.|++++||.+|.|+++|.|.+ ++|++++.++.+.+. ..
T Consensus 270 i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~ 349 (451)
T TIGR01173 270 IDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNA 349 (451)
T ss_pred EcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCc
Confidence 33444444444444445555 56677888999999997 8888888888888888888873 666666666554431 12
Q ss_pred hccCCC--------cceEeCCCCEEc-ceEeCC-------CCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcE
Q 015296 339 LAAKGS--------VPIGIGKNSHIK-RAIIDK-------NARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDAL 402 (409)
Q Consensus 339 ~~~~g~--------~~v~Ig~~~~I~-~~ii~~-------n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~ 402 (409)
.++++. ..+.||+++.|. ++++.+ ++.||++|.|..++.+....+++++++|+.| .+|.++
T Consensus 350 ~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g-~~v~~~-- 426 (451)
T TIGR01173 350 RIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAG-STVTKD-- 426 (451)
T ss_pred EECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEEccC-CEECcc--
Confidence 222221 014678888875 565543 4777777777777777777888888888888 445444
Q ss_pred eCCCcc
Q 015296 403 IPSGTI 408 (409)
Q Consensus 403 Ip~gtv 408 (409)
||++++
T Consensus 427 v~~~~~ 432 (451)
T TIGR01173 427 VPEGAL 432 (451)
T ss_pred CCCCcE
Confidence 455554
No 84
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.25 E-value=3.5e-11 Score=111.98 Aligned_cols=52 Identities=17% Similarity=0.102 Sum_probs=38.2
Q ss_pred cceEEEEEECCCcEEcc-eEEeceEECCCCEECCCCEEeceEEeCCccccccc
Q 015296 283 DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDA 334 (409)
Q Consensus 283 ~~~i~~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~ 334 (409)
.+.+.++.||++|.|++ |.|.+++||.+|.|+.+|.|.++.|+..+.++.+.
T Consensus 14 ~a~i~~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v 66 (204)
T TIGR03308 14 TAELTESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMV 66 (204)
T ss_pred CcEEeccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCC
Confidence 45566677888888887 88888888888888888888777777766554443
No 85
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.25 E-value=5.1e-11 Score=116.31 Aligned_cols=52 Identities=27% Similarity=0.408 Sum_probs=22.6
Q ss_pred CccCCCcccCCceEe-cceEE-EEEECCCcEEcc-eEEe-ceEECCCCEECCCCEE
Q 015296 268 PIYTQPRYLPPSKML-DADVT-DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAII 319 (409)
Q Consensus 268 ~i~~~~~~~~p~~i~-~~~i~-~~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I 319 (409)
.|.+.+.+.|.+.+. ++.|+ +++|+++++||+ +.|. +++||++|+||++|.|
T Consensus 101 ~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i 156 (338)
T COG1044 101 GIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVI 156 (338)
T ss_pred ccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEE
Confidence 344444444444444 33332 244444444444 4443 4444444444444444
No 86
>PLN02472 uncharacterized protein
Probab=99.23 E-value=1.3e-10 Score=110.90 Aligned_cols=113 Identities=18% Similarity=0.326 Sum_probs=78.0
Q ss_pred CCCccCCCcccCCceEecceEEEEEECCCcEEcc-eEEe-c---eEECCCCEECCCCEEe-----------ceEEeCCcc
Q 015296 266 SAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-H---SVVGLRSCISEGAIIE-----------DTLLMGADY 329 (409)
Q Consensus 266 ~~~i~~~~~~~~p~~i~~~~i~~~~Ig~g~~I~~-~~I~-~---svIg~~~~Ig~~~~I~-----------~s~i~~~~~ 329 (409)
...+.....+.|.+.+. +++.||++|.|.. ++|+ . .+||.+|.|+++|.|. +++|+++
T Consensus 59 ~p~i~~~~~I~p~a~i~----G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~-- 132 (246)
T PLN02472 59 VPKVAVDAYVAPNVVLA----GQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRY-- 132 (246)
T ss_pred CCccCCCCEECCCCEEe----cCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCC--
Confidence 33444445555555554 4577888888887 7776 2 7899999999999995 3555554
Q ss_pred cccccchhhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCcc
Q 015296 330 YETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 408 (409)
Q Consensus 330 ~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtv 408 (409)
+.||+++.|.+|+|++|+.||.+|+|..++.+++++. |+.| .+|.++..||+|++
T Consensus 133 -----------------v~IG~~s~L~~~~Igd~v~IG~~svI~~gavIg~~~~------Ig~g-svV~~g~~Ip~g~~ 187 (246)
T PLN02472 133 -----------------VTIGAYSLLRSCTIEPECIIGQHSILMEGSLVETHSI------LEAG-SVLPPGRRIPTGEL 187 (246)
T ss_pred -----------------CEECCCcEECCeEEcCCCEECCCCEECCCCEECCCCE------ECCC-CEECCCCEeCCCCE
Confidence 4689999999999999999999998887665555544 4444 44555555555543
No 87
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.22 E-value=8.1e-11 Score=105.43 Aligned_cols=127 Identities=17% Similarity=0.215 Sum_probs=74.6
Q ss_pred ccCCCCCccCCCcccCCceEe-c------ceEE-EEEECCCcEEcc-eEEeceEECCCCEECCCCEEeceEEeCCccccc
Q 015296 262 FYDRSAPIYTQPRYLPPSKML-D------ADVT-DSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYET 332 (409)
Q Consensus 262 ~~~~~~~i~~~~~~~~p~~i~-~------~~i~-~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~ 332 (409)
++.+.+.|.+.+.+.+++.+. + +.+. +++|+++|.|++ +.|.+++|++++.|+.++.+++++|+++..++.
T Consensus 19 ~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~ 98 (163)
T cd05636 19 WIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGA 98 (163)
T ss_pred EEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECC
Confidence 455555565555555555554 3 3444 489999999999 999999999999999999999999988854433
Q ss_pred ccchh-hhccCCCcceEe-C----CCCEEcceEeCCCCEECCCcEEeCCCccCCceeecCCe
Q 015296 333 DADRR-FLAAKGSVPIGI-G----KNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGY 388 (409)
Q Consensus 333 ~~~~~-~~~~~g~~~v~I-g----~~~~I~~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~ 388 (409)
..... .......+++.. + .+....+++|++++.||.++.|..+..+++.+.++.|+
T Consensus 99 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~ags 160 (163)
T cd05636 99 GTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYPGC 160 (163)
T ss_pred CcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEECCCc
Confidence 32110 000000000000 0 00011246666666666666666555444444444433
No 88
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.21 E-value=7.8e-11 Score=113.57 Aligned_cols=41 Identities=27% Similarity=0.379 Sum_probs=20.9
Q ss_pred eEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcC
Q 015296 358 AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 399 (409)
Q Consensus 358 ~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~ 399 (409)
++|++||.||.+|+|..+..+++++.++.|++|..+ +.|++
T Consensus 177 viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~g-t~I~~ 217 (272)
T PRK11830 177 VIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQS-TKIYD 217 (272)
T ss_pred eEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCC-eEECc
Confidence 455555555555555555555555555555555544 44443
No 89
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.20 E-value=1.7e-10 Score=106.69 Aligned_cols=95 Identities=17% Similarity=0.266 Sum_probs=68.8
Q ss_pred EEEEECCCcEEcc-eEEec----eEECCCCEECCCCEEec-----eEEeCCcccccccchhhhccCCCcceEeCCCCEEc
Q 015296 287 TDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIED-----TLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK 356 (409)
Q Consensus 287 ~~~~Ig~g~~I~~-~~I~~----svIg~~~~Ig~~~~I~~-----s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~ 356 (409)
.++.||++|.|+. |.|++ ++||.+|.|+++|.|+. ++|+++ +.||+++.+.
T Consensus 27 g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~-------------------~~Ig~~a~i~ 87 (196)
T PRK13627 27 GDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGEN-------------------GHIGHGAILH 87 (196)
T ss_pred CceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCC-------------------CEECCCcEEe
Confidence 5578888888888 88863 58999999999999865 344444 3688899999
Q ss_pred ceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCc
Q 015296 357 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGT 407 (409)
Q Consensus 357 ~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gt 407 (409)
+|+|+++|.||.+++|.++..+++.+. |+.| .+|.++..+|+++
T Consensus 88 g~vIG~~v~IG~ga~V~~g~~IG~~s~------Vgag-s~V~~~~~ip~~~ 131 (196)
T PRK13627 88 GCVIGRDALVGMNSVIMDGAVIGEESI------VAAM-SFVKAGFQGEKRQ 131 (196)
T ss_pred eEEECCCCEECcCCccCCCcEECCCCE------EcCC-CEEeCCcCcCCCc
Confidence 999999999999988876655555544 5455 3444555555544
No 90
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.20 E-value=2.2e-10 Score=107.76 Aligned_cols=161 Identities=19% Similarity=0.168 Sum_probs=102.2
Q ss_pred cCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCC-CceEEEEcccCh-hhHHHHHHHHH------
Q 015296 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNS-ASLNRHLSRAY------ 158 (409)
Q Consensus 87 ~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~G-i~~I~Vv~~~~~-~~i~~~l~~~~------ 158 (409)
|+++.+||||||.|+||+ ...||+|+|++| +|||+|+++++..++ +++|+|++++.. +.+.+++...+
T Consensus 1 ~~~~~~iILAaG~s~R~g---~~~~K~l~~~~g-~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~ 76 (227)
T PRK00155 1 MMMVYAIIPAAGKGSRMG---ADRPKQYLPLGG-KPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAKDPKVTVV 76 (227)
T ss_pred CCceEEEEEcCccccccC---CCCCceeeEECC-EEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhccCCceEEe
Confidence 456889999999999995 347999999998 599999999999865 899999999765 44433221100
Q ss_pred -------H---HHHHHc-CCCeEEEEec-CCc--------------------------------------ccCCC----c
Q 015296 159 -------A---KQLKAM-KVDTTILGLD-DER--------------------------------------AKEMP----Y 184 (409)
Q Consensus 159 -------~---e~~~~~-~~d~til~~~-~~~--------------------------------------~~ekp----~ 184 (409)
. ..+... +.+ .++..+ +.+ +...+ .
T Consensus 77 ~~~~~~~~sv~~~l~~~~~~d-~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~r~~~ 155 (227)
T PRK00155 77 AGGAERQDSVLNGLQALPDDD-WVLVHDAARPFLTPDDIDRLIEAAEETGAAILAVPVKDTIKRSDDGGGIVDTPDRSGL 155 (227)
T ss_pred CCcchHHHHHHHHHHhCCCCC-EEEEccCccCCCCHHHHHHHHHHHhhCCCEEEEEeccccEEEEcCCCceeecCChHHh
Confidence 0 011111 112 111111 000 00000 1
Q ss_pred EEEEEEEEEeHHHHHHHHhhcCCCCCcchhchHHHHHhCCCeEEEEEecCeEEEcCCHHHHHHHHHhhc
Q 015296 185 IASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 253 (409)
Q Consensus 185 ~~~~Giyif~~~vl~~ll~~~~~~~~d~~~dli~~ll~~g~~V~a~~~~gyw~DIgt~edy~~an~~ll 253 (409)
...-+.|.|+.+.|..++..... ...+..|....+...|.++..+..+..++||+|++||..|...+.
T Consensus 156 ~~~~~p~~f~~~~l~~~~~~~~~-~~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~ 223 (227)
T PRK00155 156 WAAQTPQGFRIELLREALARALA-EGKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILK 223 (227)
T ss_pred eeeeCCccchHHHHHHHHHHHHh-cCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHH
Confidence 11114678888888877654332 223445656555556778888887777889999999999987543
No 91
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.20 E-value=1.1e-10 Score=116.02 Aligned_cols=172 Identities=16% Similarity=0.102 Sum_probs=75.6
Q ss_pred eEEEcCCHHHHHHHHHhhccCCCCCCcccCCCCCccCCCcccCCceEe-cceEE-EEEECCCcEEcc-eEEe-ceEECCC
Q 015296 235 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVT-DSVIGEGCVIKN-CKIH-HSVVGLR 310 (409)
Q Consensus 235 yw~DIgt~edy~~an~~ll~~~~~~~~~~~~~~~i~~~~~~~~p~~i~-~~~i~-~~~Ig~g~~I~~-~~I~-~svIg~~ 310 (409)
.++-+++|...+.....++.+.......+++.+.+.+.+.+.+.+.+. .+.|. ++.||++|+|+. |.|. +++||++
T Consensus 66 ~~~~v~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~ 145 (324)
T TIGR01853 66 AALVVKDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDG 145 (324)
T ss_pred eEEEECCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCC
Confidence 356678887655444445533211123345554444444443333333 22221 233444444443 3333 3444444
Q ss_pred CEECCCCEEe-ceEEeCCcccccccc---------------hhhhccCCCcceEeCCCCEEc-ceEeC----CCCEECCC
Q 015296 311 SCISEGAIIE-DTLLMGADYYETDAD---------------RRFLAAKGSVPIGIGKNSHIK-RAIID----KNARIGDN 369 (409)
Q Consensus 311 ~~Ig~~~~I~-~s~i~~~~~~~~~~~---------------~~~~~~~g~~~v~Ig~~~~I~-~~ii~----~n~~IG~~ 369 (409)
|.|+++|.|. +++|++++.+...+. +....+.|. +.||+++.|. ++.|+ ++++||++
T Consensus 146 ~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~--vvIgd~v~IGa~~~I~r~~~~~t~Ig~~ 223 (324)
T TIGR01853 146 SRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGR--VIIEDDVEIGANTTIDRGAFDDTIIGEG 223 (324)
T ss_pred ceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccce--EEECCCcEECCCCEEecCCcCcceecCC
Confidence 4444444443 233333332222111 111111122 3444444443 33332 34566666
Q ss_pred cEEeCCCccCCceeecCCeEEeCC-----eEEEcCCcEeCCCcc
Q 015296 370 VKIVNSDSVQEAARETDGYFIKSG-----IVTIIKDALIPSGTI 408 (409)
Q Consensus 370 ~~i~~~~~v~~~~~~~~g~~i~~g-----~v~i~~~~~Ip~gtv 408 (409)
++|.+...+.++++++++++|.++ .+.||+++.|+.++.
T Consensus 224 ~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~ 267 (324)
T TIGR01853 224 TKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVG 267 (324)
T ss_pred cEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccc
Confidence 666666666666666666666444 134555555544443
No 92
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.20 E-value=1.5e-10 Score=116.15 Aligned_cols=171 Identities=18% Similarity=0.103 Sum_probs=74.0
Q ss_pred EEEcCCHHH-HHHHHHhhccCCC-CCCcccCCCCCccCCCcccCCceEe-cceEEE-EEECCCcEEcc-eEEe-ceEECC
Q 015296 236 WEDIGTIEA-FYNANLGITKKPI-PDFSFYDRSAPIYTQPRYLPPSKML-DADVTD-SVIGEGCVIKN-CKIH-HSVVGL 309 (409)
Q Consensus 236 w~DIgt~ed-y~~an~~ll~~~~-~~~~~~~~~~~i~~~~~~~~p~~i~-~~~i~~-~~Ig~g~~I~~-~~I~-~svIg~ 309 (409)
++-+++|.. +..+...+..+.. .....+++.+.+...+.+.+.+.+. ++.|++ +.||++|+|+. |.|. ++.||+
T Consensus 74 ~i~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~ 153 (343)
T PRK00892 74 LLVVKNPYLAFARLAQLFDPPATPSPAAGIHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGA 153 (343)
T ss_pred EEEeCCHHHHHHHHHHHhccccccccCCcCCCCcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECC
Confidence 334567664 4444444432220 1123455555555554444444443 333322 44444444444 4444 444555
Q ss_pred CCEECCCCEEeceE-EeCCcccccccch--------------hhhccCCCcceEeCCCCEEc-ceEeC----CCCEECCC
Q 015296 310 RSCISEGAIIEDTL-LMGADYYETDADR--------------RFLAAKGSVPIGIGKNSHIK-RAIID----KNARIGDN 369 (409)
Q Consensus 310 ~~~Ig~~~~I~~s~-i~~~~~~~~~~~~--------------~~~~~~g~~~v~Ig~~~~I~-~~ii~----~n~~IG~~ 369 (409)
+|.|+++|.|.+.+ |++++++...+.. ....+.|. +.||+++.|. ++.|+ .+++||++
T Consensus 154 ~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~--v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~ 231 (343)
T PRK00892 154 DCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGR--VIIGDDVEIGANTTIDRGALDDTVIGEG 231 (343)
T ss_pred CCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeecccccc--EEECCCcEECCCcEEecCccccceeCCC
Confidence 55555544443322 3333333222211 00001111 3444444443 33332 24555555
Q ss_pred cEEeCCCccCCceeecCCeEEeCC-----eEEEcCCcEeCCCcc
Q 015296 370 VKIVNSDSVQEAARETDGYFIKSG-----IVTIIKDALIPSGTI 408 (409)
Q Consensus 370 ~~i~~~~~v~~~~~~~~g~~i~~g-----~v~i~~~~~Ip~gtv 408 (409)
++|.+...+.++++++++++|.++ .+.|++++.|+.++.
T Consensus 232 ~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~ 275 (343)
T PRK00892 232 VKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVG 275 (343)
T ss_pred CEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCE
Confidence 555555555555555555555444 134555555554443
No 93
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.19 E-value=2.1e-10 Score=106.40 Aligned_cols=142 Identities=21% Similarity=0.280 Sum_probs=82.6
Q ss_pred CCCCCccCCCcccCCceEe-cceEEE-EEECCCcEEcc-eEEe-ceEECCCCEECCCCEEeceEEeCCcccccccch---
Q 015296 264 DRSAPIYTQPRYLPPSKML-DADVTD-SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADR--- 336 (409)
Q Consensus 264 ~~~~~i~~~~~~~~p~~i~-~~~i~~-~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~--- 336 (409)
++.+.+...+.+.+.+++. ++.|.+ ++|++++.|++ |.|. +++|+.+++|+++|.|.+...++.+.+......
T Consensus 5 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~ 84 (205)
T cd03352 5 GENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGW 84 (205)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcE
Confidence 3444555555555555555 444444 66777777777 7776 677777777777777776444443322111110
Q ss_pred -------hhhccCCCcceEeCCCCEEc-----ceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeC
Q 015296 337 -------RFLAAKGSVPIGIGKNSHIK-----RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIP 404 (409)
Q Consensus 337 -------~~~~~~g~~~v~Ig~~~~I~-----~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip 404 (409)
..+++++ +.|++++.+. ++.|++++.|+.++.|..+..+++.+.++.++.+.++ +.|++++.|+
T Consensus 85 ~~~~~~~~v~Ig~~---~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~-~~Ig~~~~ig 160 (205)
T cd03352 85 VKIPQLGGVIIGDD---VEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGS-TTIGDNVIIG 160 (205)
T ss_pred EEcCCcceEEECCC---EEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccc-cEECCCeEEc
Confidence 1122222 2355555553 3566667777777777666666677666666666665 7778887777
Q ss_pred CCccC
Q 015296 405 SGTII 409 (409)
Q Consensus 405 ~gtvi 409 (409)
++++|
T Consensus 161 ~~~~v 165 (205)
T cd03352 161 GQVGI 165 (205)
T ss_pred CCCEE
Confidence 77654
No 94
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.19 E-value=1.6e-10 Score=91.41 Aligned_cols=64 Identities=25% Similarity=0.453 Sum_probs=43.3
Q ss_pred ECCCcEEcc-eEEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCEECCC
Q 015296 291 IGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 369 (409)
Q Consensus 291 Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~ 369 (409)
||++|+|++ +.|++++||++|.|+++|.|++++++++ +.||+++.+.+++|++++.||++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~-------------------~~ig~~~~l~~svi~~~~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDN-------------------VTIEDGCTLENCIIGNGAVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeccEEeCCCEECCC
Confidence 566666666 6666677777777777777777766665 24677777777777777777777
Q ss_pred cEEe
Q 015296 370 VKIV 373 (409)
Q Consensus 370 ~~i~ 373 (409)
+.+.
T Consensus 63 ~~v~ 66 (81)
T cd04652 63 CKLK 66 (81)
T ss_pred CEEc
Confidence 6663
No 95
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.19 E-value=1.2e-10 Score=91.32 Aligned_cols=68 Identities=43% Similarity=0.626 Sum_probs=58.0
Q ss_pred EECCCcEEcc-eEEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCEECC
Q 015296 290 VIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGD 368 (409)
Q Consensus 290 ~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~ 368 (409)
+|+++|.|++ |.|.+++||++|+|++++.|+++++++. +.|++++.+.+++|++++.|++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~-------------------~~i~~~~~i~~svv~~~~~i~~ 61 (79)
T cd03356 1 LIGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDN-------------------VTIGANSVIVDSIIGDNAVIGE 61 (79)
T ss_pred CccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCC-------------------CEECCCCEEECCEECCCCEECC
Confidence 3688888887 8888899999999999999999999887 3589999999999999999999
Q ss_pred CcEEeCCC
Q 015296 369 NVKIVNSD 376 (409)
Q Consensus 369 ~~~i~~~~ 376 (409)
++.+.++.
T Consensus 62 ~~~i~~~~ 69 (79)
T cd03356 62 NVRVVNLC 69 (79)
T ss_pred CCEEcCCe
Confidence 88886543
No 96
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.18 E-value=2.6e-10 Score=105.95 Aligned_cols=119 Identities=23% Similarity=0.243 Sum_probs=85.2
Q ss_pred EEEECCCcEEcc-eEEe-ceEECCCCEECCCCEEec-------------eEEeCCcccccccch-hhhccCCCcceEeCC
Q 015296 288 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED-------------TLLMGADYYETDADR-RFLAAKGSVPIGIGK 351 (409)
Q Consensus 288 ~~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~-------------s~i~~~~~~~~~~~~-~~~~~~g~~~v~Ig~ 351 (409)
++.|++|++|++ ++|+ ++.||++++|-+++.|+. -+|++++.+.+++.. .+..+.+. -+.||+
T Consensus 33 ~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~IRE~vTi~~GT~~g~g-~T~IGd 111 (260)
T COG1043 33 NVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREFVTIHRGTVQGGG-VTRIGD 111 (260)
T ss_pred CcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeEeeEEEEeccccCCce-eEEECC
Confidence 367777777777 7777 778888888888887753 366666667666553 44433322 267887
Q ss_pred CCEE-cceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCe-----EEEcCCcEeCCCc
Q 015296 352 NSHI-KRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGT 407 (409)
Q Consensus 352 ~~~I-~~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~-----v~i~~~~~Ip~gt 407 (409)
|+-+ -.+-|..+|+||++|++.|..-+...+.++|.++|++.. +.||+++.|+-.|
T Consensus 112 nnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvrIG~~amiGg~S 173 (260)
T COG1043 112 NNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLS 173 (260)
T ss_pred CCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEEEcchheecccc
Confidence 7777 478888889999999988888888888888888777662 2477777776554
No 97
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.18 E-value=1.2e-10 Score=90.95 Aligned_cols=74 Identities=24% Similarity=0.418 Sum_probs=61.8
Q ss_pred EECCCcEEcc-eEEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCEECC
Q 015296 290 VIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGD 368 (409)
Q Consensus 290 ~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~ 368 (409)
+||++|+|++ |.|.+++|+++|.|+++|.|.+++++++ +.|+++++|.+++|+++++||+
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~-------------------~~i~~~~~i~~~~i~~~~~i~~ 61 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDD-------------------VTIEDGCTIHHSIVADGAVIGK 61 (79)
T ss_pred CccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeCcEEcCCCEECC
Confidence 3688888888 8888999999999999999999999887 3689999999999999999999
Q ss_pred CcEEeCCCccCCce
Q 015296 369 NVKIVNSDSVQEAA 382 (409)
Q Consensus 369 ~~~i~~~~~v~~~~ 382 (409)
++.|..+..+++..
T Consensus 62 ~~~i~~~~~v~~~~ 75 (79)
T cd05787 62 GCTIPPGSLISFGV 75 (79)
T ss_pred CCEECCCCEEeCCc
Confidence 98886554444433
No 98
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.18 E-value=4.9e-10 Score=99.73 Aligned_cols=96 Identities=22% Similarity=0.262 Sum_probs=74.7
Q ss_pred EEEEECCCcEEcc-eEEec----eEECCCCEECCCCEEec-----eEEeCCcccccccchhhhccCCCcceEeCCCCEEc
Q 015296 287 TDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIED-----TLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK 356 (409)
Q Consensus 287 ~~~~Ig~g~~I~~-~~I~~----svIg~~~~Ig~~~~I~~-----s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~ 356 (409)
.++.||++|.|++ |.|.. .+||++|.|+++|.|.. ++|++. +.|++++.+.
T Consensus 17 ~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~-------------------~~I~~~~~i~ 77 (154)
T cd04650 17 GDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDY-------------------VTIGHNAVVH 77 (154)
T ss_pred eeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCC-------------------CEECCCcEEE
Confidence 4578999999998 88884 59999999999999976 556554 3689999999
Q ss_pred ceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcE
Q 015296 357 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDAL 402 (409)
Q Consensus 357 ~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~ 402 (409)
+++|++++.||.++.+..+..+++.+.++.++.+..| ..++++++
T Consensus 78 ~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g-~~i~~~~v 122 (154)
T cd04650 78 GAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPG-KEIPDYSL 122 (154)
T ss_pred CcEECCCCEEcCCCEEeCCCEECCCCEECCCCEECCC-cEeCCCCE
Confidence 9999999999999999877666666666666655555 44444444
No 99
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.18 E-value=1.2e-10 Score=111.89 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=26.3
Q ss_pred eEeCCCCEEc-ceEe------CCCCEECCCcEEeCCCccCCceeecCCeEEeCC
Q 015296 347 IGIGKNSHIK-RAII------DKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 393 (409)
Q Consensus 347 v~Ig~~~~I~-~~ii------~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g 393 (409)
+.||++++|+ ++.| +.++.||++|.|...+.+.+++.++++++|..+
T Consensus 78 v~IG~~~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~ 131 (255)
T PRK12461 78 LEIGDRNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNG 131 (255)
T ss_pred eEECCceEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCC
Confidence 4455555554 3333 335666666666666666666666666655544
No 100
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.17 E-value=5e-10 Score=100.93 Aligned_cols=114 Identities=19% Similarity=0.349 Sum_probs=78.8
Q ss_pred cCCCcccCCceEecceEEEEEECCCcEEcc-eEEe-----ceEECCCCEECCCCEEe-----ceEEeCCcccccccchhh
Q 015296 270 YTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-----HSVVGLRSCISEGAIIE-----DTLLMGADYYETDADRRF 338 (409)
Q Consensus 270 ~~~~~~~~p~~i~~~~i~~~~Ig~g~~I~~-~~I~-----~svIg~~~~Ig~~~~I~-----~s~i~~~~~~~~~~~~~~ 338 (409)
..+..+.|.+.+. .++.||++|+|++ |.|. ++.||++|.|++++.|. +..|+++
T Consensus 6 g~~~~I~~~a~i~----~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~----------- 70 (167)
T cd00710 6 DPSAYVHPTAVVI----GDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKN----------- 70 (167)
T ss_pred CCCeEECCCCEEE----eeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCC-----------
Confidence 3344444444443 3567788888887 7775 26888888888888885 2333333
Q ss_pred hccCCCcceEeCCCCEEcc-eEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCccC
Q 015296 339 LAAKGSVPIGIGKNSHIKR-AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 409 (409)
Q Consensus 339 ~~~~g~~~v~Ig~~~~I~~-~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtvi 409 (409)
+.|+.++.|.+ ++|++++.||.++.|. ++.+++.+.++.++.|. + +.|++++.+|+++++
T Consensus 71 --------~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~Ig~~s~i~-~-~~i~~~~~v~~~~~v 131 (167)
T cd00710 71 --------VSIAHGAIVHGPAYIGDNCFIGFRSVVF-NAKVGDNCVIGHNAVVD-G-VEIPPGRYVPAGAVI 131 (167)
T ss_pred --------ceECCCCEEeCCEEECCCCEECCCCEEE-CCEECCCCEEcCCCEEe-C-CEeCCCCEECCCCEE
Confidence 25777777764 8888888888888886 46677777777777774 4 567888888887753
No 101
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.17 E-value=3.4e-10 Score=114.65 Aligned_cols=160 Identities=13% Similarity=0.101 Sum_probs=99.9
Q ss_pred ccCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCC-CceEEEEcccChhhHHHHHHHHHH-----
Q 015296 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYA----- 159 (409)
Q Consensus 86 ~~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~G-i~~I~Vv~~~~~~~i~~~l~~~~~----- 159 (409)
.|+++.+||||||.|+||. ...||+++|++| +|||+|+++.+.+++ +++|+|++++....+.+.+.+.+.
T Consensus 2 ~mm~v~aIILAAG~GsRmg---~~~pKqll~l~G-kPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~~~~v~~v 77 (378)
T PRK09382 2 LMSDISLVIVAAGRSTRFS---AEVKKQWLRIGG-KPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPEIKFVTLV 77 (378)
T ss_pred CCCcceEEEECCCCCccCC---CCCCeeEEEECC-eeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcccCCeEEEe
Confidence 3567899999999999994 357999999997 599999999999987 799999998765443332211000
Q ss_pred -----------HHHHHcCCCeEEE----------------------------EecCCcccCC--CcEEEEEEEE------
Q 015296 160 -----------KQLKAMKVDTTIL----------------------------GLDDERAKEM--PYIASMGIYV------ 192 (409)
Q Consensus 160 -----------e~~~~~~~d~til----------------------------~~~~~~~~ek--p~~~~~Giyi------ 192 (409)
..++....+.-++ .+...+.... ...-..++|.
T Consensus 78 ~gG~~r~~SV~~gL~~l~~d~VLVhdadrPfv~~e~I~~li~~~~~~~a~i~~~pv~Dtik~~~~tldR~~l~~~QTPQ~ 157 (378)
T PRK09382 78 TGGATRQESVRNALEALDSEYVLIHDAARPFVPKELIDRLIEALDKADCVLPALPVADTLKRANETVDREGLKLIQTPQL 157 (378)
T ss_pred CCCchHHHHHHHHHHhcCCCeEEEeeccccCCCHHHHHHHHHHhhcCCeEEEEEEeccCcEEeeeEcCcccEEEEECCCC
Confidence 1111222221111 1110000000 0011123343
Q ss_pred EeHHHHHHHHhhcCCCCCcchhchHHHHHhCCCeEEEEEecCeEEEcCCHHHHHHHHHhhcc
Q 015296 193 ISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 254 (409)
Q Consensus 193 f~~~vl~~ll~~~~~~~~d~~~dli~~ll~~g~~V~a~~~~gyw~DIgt~edy~~an~~ll~ 254 (409)
|+.+.+... ..+. ...+|..+.+...|.+|..+..+..|.+|.+|+||..|+..+..
T Consensus 158 f~~~~l~~a----~~~~-~~~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 158 SRTKTLKAA----ADGR-GDFTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred CCHHHHHHH----HhCC-CCcccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 333333221 1112 23468888888889999999999999999999999999975543
No 102
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.16 E-value=1.7e-10 Score=107.17 Aligned_cols=136 Identities=20% Similarity=0.223 Sum_probs=91.0
Q ss_pred CCccCCCcccCCceEe-cceEEE-EEECCCcEEcc-eEEe-ceEECCCCEECCCCEEeceEEeCCcccccccchhhhccC
Q 015296 267 APIYTQPRYLPPSKML-DADVTD-SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAK 342 (409)
Q Consensus 267 ~~i~~~~~~~~p~~i~-~~~i~~-~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~ 342 (409)
+.|++.+.++|.+++. +.+|++ |+||+++.|++ +.|+ |++|--.++||+++ .|++...++..+|.-...++
T Consensus 4 ~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n-----~I~~~A~iG~~pQdlKykge 78 (260)
T COG1043 4 AKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNN-----RIFPFASIGEDPQDLKYKGE 78 (260)
T ss_pred cccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCC-----EEecccccCCCCcccccCCC
Confidence 4455666666667666 444444 55555555555 4444 44444444444444 44454555556665555555
Q ss_pred CCcceEeCCCCEEc-ceEe-------CCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCccC
Q 015296 343 GSVPIGIGKNSHIK-RAII-------DKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 409 (409)
Q Consensus 343 g~~~v~Ig~~~~I~-~~ii-------~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtvi 409 (409)
.+ .+.||+|+.|+ .+.| +.-++||+|+.++..+.+..++++|+.|++.++ +.++.++.|++.++|
T Consensus 79 ~T-~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNn-atLAGHV~igD~aii 151 (260)
T COG1043 79 PT-RLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANN-ATLAGHVEVGDYAII 151 (260)
T ss_pred ce-EEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecC-CeEeccEEECCEEEE
Confidence 33 37899999997 4444 246799999999999999999999999999988 888888888877664
No 103
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.16 E-value=2.1e-10 Score=118.92 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=72.1
Q ss_pred ccCCceEe-cceEEEEEECCCcEEcc-eEEeceEECCCCEECCCCEEe-ceEEeCCcccccccch-hhhccCCC------
Q 015296 275 YLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIE-DTLLMGADYYETDADR-RFLAAKGS------ 344 (409)
Q Consensus 275 ~~~p~~i~-~~~i~~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~-~~~~~~g~------ 344 (409)
+.+.+.|. ++.|.+++|+++|.|++ |.|++++||.+|.||+++.|. ++++++++.++.+.+. ...+.++.
T Consensus 290 ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~ 369 (456)
T PRK14356 290 IARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANHLT 369 (456)
T ss_pred ECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCCcEecccc
Confidence 33444444 45667788888888888 888888888888888888886 4666665555544321 11111110
Q ss_pred --cceEeCCCCEEc-ceEe-------CCCCEECCCcEEeCCCccCCceeecCCeEEeCCeE
Q 015296 345 --VPIGIGKNSHIK-RAII-------DKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIV 395 (409)
Q Consensus 345 --~~v~Ig~~~~I~-~~ii-------~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v 395 (409)
....||+++.|. ++++ +.++.||+++++..++.+....+++++++|+.|.+
T Consensus 370 ~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~ 430 (456)
T PRK14356 370 YLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGALVGAGSV 430 (456)
T ss_pred cccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEECCCCEEcCCCE
Confidence 012466666664 3222 12456666666666655556667777777777743
No 104
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.16 E-value=8.1e-10 Score=97.95 Aligned_cols=97 Identities=19% Similarity=0.360 Sum_probs=74.6
Q ss_pred EEEEECCCcEEcc-eEEec----eEECCCCEECCCCEEece-----EEeCCcccccccchhhhccCCCcceEeCCCCEEc
Q 015296 287 TDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDT-----LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK 356 (409)
Q Consensus 287 ~~~~Ig~g~~I~~-~~I~~----svIg~~~~Ig~~~~I~~s-----~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~ 356 (409)
+++.||++|.|++ |.|.. ++||++|.|+++|.|.++ +|+++ +.|+.++.+.
T Consensus 16 g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~-------------------~~I~~~~~i~ 76 (153)
T cd04645 16 GDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDN-------------------VTVGHGAVLH 76 (153)
T ss_pred EeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCC-------------------cEECCCcEEe
Confidence 4678999999998 88873 599999999999999874 66665 3689999999
Q ss_pred ceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEe
Q 015296 357 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALI 403 (409)
Q Consensus 357 ~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~I 403 (409)
+++|++++.||.++.+..+..+++.++++.+++|..+ +.+.+++++
T Consensus 77 ~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~-~~i~~~~~~ 122 (153)
T cd04645 77 GCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPG-KVIPPGSLV 122 (153)
T ss_pred eeEECCCCEECCCCEEcCCCEECCCCEECCCCEECCC-CEeCCCCEE
Confidence 9999999999999999766666666666555555555 444444444
No 105
>PLN02917 CMP-KDO synthetase
Probab=99.15 E-value=9.8e-10 Score=107.83 Aligned_cols=155 Identities=15% Similarity=0.146 Sum_probs=104.6
Q ss_pred ceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHH---------HH
Q 015296 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRA---------YA 159 (409)
Q Consensus 89 ~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~---------~~ 159 (409)
++.+||||+|.++||. +|+|+|++| +|||+|+++.+..++..+. |++.++.+.+.+++.+. +.
T Consensus 47 ~i~aIIpA~G~SsR~~------~K~L~~i~G-kPLL~~vi~~a~~~~~~~~-VVV~~~~e~I~~~~~~~~v~vi~~~~~~ 118 (293)
T PLN02917 47 RVVGIIPARFASSRFE------GKPLVHILG-KPMIQRTWERAKLATTLDH-IVVATDDERIAECCRGFGADVIMTSESC 118 (293)
T ss_pred cEEEEEecCCCCCCCC------CCCeeeECC-EEHHHHHHHHHHcCCCCCE-EEEECChHHHHHHHHHcCCEEEeCCccc
Confidence 5679999999999995 599999998 5999999999998765444 33345566666555420 00
Q ss_pred ----------------------------------------HHHHHcCCCeEEEE-------------------ecCC-c-
Q 015296 160 ----------------------------------------KQLKAMKVDTTILG-------------------LDDE-R- 178 (409)
Q Consensus 160 ----------------------------------------e~~~~~~~d~til~-------------------~~~~-~- 178 (409)
+.+.. ..+..+.. .+++ .
T Consensus 119 ~~GT~~~~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~-~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~a 197 (293)
T PLN02917 119 RNGTERCNEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYA 197 (293)
T ss_pred CCchHHHHHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHh-cCCceEEEEeeecCHHHhcCCCceEEEECCCCeE
Confidence 11111 11111100 1111 1
Q ss_pred -------c---------cCCCcEEEEEEEEEeHHHHHHHHhhcC---CCCCcchhchHHHHHhCCCeEEEEEecCeEEEc
Q 015296 179 -------A---------KEMPYIASMGIYVISKDVMLNLLRDKF---PGANDFGSEVIPGATSIGMRVQAYLYDGYWEDI 239 (409)
Q Consensus 179 -------~---------~ekp~~~~~Giyif~~~vl~~ll~~~~---~~~~d~~~dli~~ll~~g~~V~a~~~~gyw~DI 239 (409)
. ..++.+.++|+|.|+.+.|..+ .... .+.+.+++|+. +++.|++|.++..+....-|
T Consensus 198 lyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l-~~l~~~n~e~e~yLtdl~--~le~G~~i~~~~~~~~~~GV 274 (293)
T PLN02917 198 IYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIY-PELPPTPLQLEEDLEQLK--VLENGYKMKVIKVDHEAHGV 274 (293)
T ss_pred EEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHH-HcCCCCcccchhccHHHH--HHhCCCceEEEEeCCCCCCC
Confidence 0 1123688999999999999844 3322 24566778887 67889999999887666789
Q ss_pred CCHHHHHHHHHhhccC
Q 015296 240 GTIEAFYNANLGITKK 255 (409)
Q Consensus 240 gt~edy~~an~~ll~~ 255 (409)
+|++++..++..+..+
T Consensus 275 nt~~dL~~ae~~~~~~ 290 (293)
T PLN02917 275 DTPEDVEKIEALMRER 290 (293)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999877544
No 106
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.14 E-value=4.5e-10 Score=100.10 Aligned_cols=147 Identities=16% Similarity=0.212 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHHHHHHHHHcCCCe
Q 015296 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYAKQLKAMKVDT 169 (409)
Q Consensus 90 m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~~~e~~~~~~~d~ 169 (409)
|.+||+|||+||||.- .=|||++++|+ |||+|+++.+.+ .+++|++.+..+....++|+...+ .
T Consensus 1 m~~iiMAGGrGtRmg~----~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~g----------v 64 (177)
T COG2266 1 MMAIIMAGGRGTRMGR----PEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESVG----------V 64 (177)
T ss_pred CceEEecCCcccccCC----CcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhcC----------c
Confidence 5799999999999982 34999999995 999999999998 889999999999999999988631 1
Q ss_pred EEEEecCC----------cccCCCc-EEEEEEEEEeHHHHHHHHhhcCCCCCcc------hh-----chHHHHHhCCCeE
Q 015296 170 TILGLDDE----------RAKEMPY-IASMGIYVISKDVMLNLLRDKFPGANDF------GS-----EVIPGATSIGMRV 227 (409)
Q Consensus 170 til~~~~~----------~~~ekp~-~~~~Giyif~~~vl~~ll~~~~~~~~d~------~~-----dli~~ll~~g~~V 227 (409)
.++.-..+ +....|. .+++=++++++.+++.+.+........+ +. .++.. .++...
T Consensus 65 ~vi~tpG~GYv~Dl~~al~~l~~P~lvvsaDLp~l~~~~i~~vi~~~~~~~~p~~~~~~~G~v~~Glni~~~--~~~~~~ 142 (177)
T COG2266 65 KVIETPGEGYVEDLRFALESLGTPILVVSADLPFLNPSIIDSVIDAAASVEVPIVTVVKAGRVPVGLNIVGG--KQEEEI 142 (177)
T ss_pred eEEEcCCCChHHHHHHHHHhcCCceEEEecccccCCHHHHHHHHHHHhhccCceeEeeccCccceeeEeecC--CCccee
Confidence 11111110 0011243 3345567788888876655432100000 00 01111 122233
Q ss_pred EEEEecCeEEEcCCHHHHHHHHHhhcc
Q 015296 228 QAYLYDGYWEDIGTIEAFYNANLGITK 254 (409)
Q Consensus 228 ~a~~~~gyw~DIgt~edy~~an~~ll~ 254 (409)
......+.-++|+|++||..|++.+..
T Consensus 143 ~~i~~~~la~NVNT~eDl~~a~~ll~~ 169 (177)
T COG2266 143 LEIDNPELAVNVNTPEDLKKAERLLRT 169 (177)
T ss_pred EEeeccceeEecCCHHHHHHHHHHHhh
Confidence 333334556899999999999987654
No 107
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.14 E-value=3.2e-10 Score=89.60 Aligned_cols=73 Identities=22% Similarity=0.422 Sum_probs=64.8
Q ss_pred ceEe-cceEEEEEECCCcEEcc-eEEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEc
Q 015296 279 SKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK 356 (409)
Q Consensus 279 ~~i~-~~~i~~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~ 356 (409)
+.+. ++.+.++.|+++|.|++ |.|++++|+++|.|+.+|.|.+++++++ +.|++++++.
T Consensus 6 ~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~-------------------~~i~~~~~v~ 66 (81)
T cd04652 6 TQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNG-------------------AVIGEKCKLK 66 (81)
T ss_pred CEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCC-------------------CEECCCCEEc
Confidence 3443 45567899999999999 9999999999999999999999999987 4699999999
Q ss_pred ceEeCCCCEECCCc
Q 015296 357 RAIIDKNARIGDNV 370 (409)
Q Consensus 357 ~~ii~~n~~IG~~~ 370 (409)
+|+|+++++|+++.
T Consensus 67 ~~ii~~~~~i~~~~ 80 (81)
T cd04652 67 DCLVGSGYRVEAGT 80 (81)
T ss_pred cCEECCCcEeCCCC
Confidence 99999999999874
No 108
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.13 E-value=3.7e-10 Score=105.15 Aligned_cols=59 Identities=12% Similarity=0.188 Sum_probs=38.1
Q ss_pred ccCCCCCccCCCcccCCceEe-cceEEEEEECCCcEEcc-eEEeceEECCCCEECCCCEEec
Q 015296 262 FYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIED 321 (409)
Q Consensus 262 ~~~~~~~i~~~~~~~~p~~i~-~~~i~~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~ 321 (409)
++++.+.+. ...+.+.+.|. ++.+.++.||++|+|+. |.+.+++||.+|.|++++.|..
T Consensus 10 ~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~ 70 (204)
T TIGR03308 10 TLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINA 70 (204)
T ss_pred eECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECC
Confidence 444444442 23444555555 46666777777777777 7777777777777777777754
No 109
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.12 E-value=4.9e-10 Score=107.35 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=6.7
Q ss_pred eEECCCCEECCCCEEe
Q 015296 305 SVVGLRSCISEGAIIE 320 (409)
Q Consensus 305 svIg~~~~Ig~~~~I~ 320 (409)
++||.+|+||++|.|.
T Consensus 142 a~IG~~v~IG~nv~I~ 157 (269)
T TIGR00965 142 ATVGSCAQIGKNVHLS 157 (269)
T ss_pred cEECCCCEECCCCEEc
Confidence 4444444444444443
No 110
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.12 E-value=5.8e-10 Score=99.19 Aligned_cols=95 Identities=12% Similarity=0.234 Sum_probs=48.7
Q ss_pred CCCcEEcc-eEEe-ceEECCCCEECCCCEEec----eEEeCCcccccccchhhhccCCCcceEeCCCCEE-----cceEe
Q 015296 292 GEGCVIKN-CKIH-HSVVGLRSCISEGAIIED----TLLMGADYYETDADRRFLAAKGSVPIGIGKNSHI-----KRAII 360 (409)
Q Consensus 292 g~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~----s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I-----~~~ii 360 (409)
.++++|.. +.|. ++.||++|.|+++|.|.. ..|++++ .|+++++| .+++|
T Consensus 4 ~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~-------------------~Ig~~~~I~~~~~~~~~I 64 (155)
T cd04745 4 DPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGA-------------------NVQDNCVIHGFPGQDTVL 64 (155)
T ss_pred CCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCC-------------------EECCCCEEeecCCCCeEE
Confidence 34444444 4443 677888888888887764 4454443 35555555 33555
Q ss_pred CCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCc
Q 015296 361 DKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGT 407 (409)
Q Consensus 361 ~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gt 407 (409)
++++.||.++.+. +..+++.+.++.+++|.++ ++|+++++|++++
T Consensus 65 g~~~~Ig~~~~i~-~~~Ig~~~~Ig~~~~I~~g-~~Ig~~~~Ig~~s 109 (155)
T cd04745 65 EENGHIGHGAILH-GCTIGRNALVGMNAVVMDG-AVIGEESIVGAMA 109 (155)
T ss_pred cCCCEECCCcEEE-CCEECCCCEECCCCEEeCC-CEECCCCEECCCC
Confidence 5555555544442 2344444444444444444 3444444444443
No 111
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.12 E-value=7.5e-10 Score=103.32 Aligned_cols=153 Identities=16% Similarity=0.135 Sum_probs=100.1
Q ss_pred EEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhC-CCceEEEEcccCh-hhHHHHHHHH----H-----H-
Q 015296 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSRA----Y-----A- 159 (409)
Q Consensus 92 aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~-Gi~~I~Vv~~~~~-~~i~~~l~~~----~-----~- 159 (409)
+||||||.|+||+. ..||+|+|++| +|||+|+++++.++ ++++|+|++++.. +.+..++... + .
T Consensus 2 aiIlAaG~s~R~~~---~~~K~l~~l~g-kpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (217)
T TIGR00453 2 AVIPAAGRGTRFGS---GVPKQYLELGG-RPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVARAVPKIVAGGDTR 77 (217)
T ss_pred EEEEcCcccccCCC---CCCccEeEECC-eEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcCCcEEEeCCCchH
Confidence 79999999999973 46999999998 59999999999998 8999999998764 4444443320 0 0
Q ss_pred -----HHHHHc-CCCeEEEEecCCcc-----------------------------------------cCC--CcEEEEEE
Q 015296 160 -----KQLKAM-KVDTTILGLDDERA-----------------------------------------KEM--PYIASMGI 190 (409)
Q Consensus 160 -----e~~~~~-~~d~til~~~~~~~-----------------------------------------~ek--p~~~~~Gi 190 (409)
..+... +.|.-++...+.++ .++ .+..+ +.
T Consensus 78 ~~sl~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~r~~~~~~~-~p 156 (217)
T TIGR00453 78 QDSVRNGLKALKDAEWVLVHDAARPFVPKELLDRLLEALRKAGAAILALPVADTLKRVEADGFIVETVDREGLWAAQ-TP 156 (217)
T ss_pred HHHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhCCcEEEeEeccceEEEEcCCCceeecCChHHeEEEe-CC
Confidence 111111 22221111100000 000 01112 36
Q ss_pred EEEeHHHHHHHHhhcCCCCCcchhchHHHHHhCCCeEEEEEecCeEEEcCCHHHHHHHHH
Q 015296 191 YVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANL 250 (409)
Q Consensus 191 yif~~~vl~~ll~~~~~~~~d~~~dli~~ll~~g~~V~a~~~~gyw~DIgt~edy~~an~ 250 (409)
|.|+...+..++...... ..+..|....+...|.++..+..+..+++|+|++||..+..
T Consensus 157 ~~f~~~~l~~~~~~~~~~-~~~~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~ 215 (217)
T TIGR00453 157 QAFRTELLKKALARAKEE-GFEITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEA 215 (217)
T ss_pred CcccHHHHHHHHHHHHhc-CCCCCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHH
Confidence 889999988776542222 22345666667677889988888877789999999988875
No 112
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.12 E-value=2.2e-10 Score=103.65 Aligned_cols=57 Identities=25% Similarity=0.480 Sum_probs=28.6
Q ss_pred eCCCCEEc-ceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCcc
Q 015296 349 IGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 408 (409)
Q Consensus 349 Ig~~~~I~-~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtv 408 (409)
||++++|. +++++.++.||++|+|..++.+.+...++++++|+.+ .+|.++ +|++++
T Consensus 135 ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~-~~v~~~--~~~~~~ 192 (197)
T cd03360 135 IGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAG-AVVTKD--VPDGSV 192 (197)
T ss_pred ECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEECCCCEECCC-CEEcCC--CCCCCE
Confidence 45555552 4455555555555555544444445555555666555 333333 355543
No 113
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.11 E-value=1e-09 Score=98.31 Aligned_cols=112 Identities=21% Similarity=0.355 Sum_probs=70.9
Q ss_pred CCCccCCCcccCCceEecceEEEEEECCCcEEcc-eEEe----ceEECCCCEECCCCEEec-----eEEeCCcccccccc
Q 015296 266 SAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH----HSVVGLRSCISEGAIIED-----TLLMGADYYETDAD 335 (409)
Q Consensus 266 ~~~i~~~~~~~~p~~i~~~~i~~~~Ig~g~~I~~-~~I~----~svIg~~~~Ig~~~~I~~-----s~i~~~~~~~~~~~ 335 (409)
...|.+.+.+.|.+.+. +|+.||+++.|.. +.|+ .-.||++|.|.+||+|.- +.|+++
T Consensus 11 ~P~i~~~a~Va~~A~vi----GdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~-------- 78 (176)
T COG0663 11 SPKIDPTAFVAPSATVI----GDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDD-------- 78 (176)
T ss_pred CCCCCCceEECCCCEEE----EeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCC--------
Confidence 33444555555555543 5666666666666 6665 457777777777777753 233333
Q ss_pred hhhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCc
Q 015296 336 RRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGT 407 (409)
Q Consensus 336 ~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gt 407 (409)
+.||+++.|++|.|++||-||-+++|.+++.+++.+.++.|.+ |.++..+|+++
T Consensus 79 -----------vtIGH~aivHGc~Ig~~~lIGmgA~vldga~IG~~~iVgAgal-------V~~~k~~p~~~ 132 (176)
T COG0663 79 -----------VTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGAL-------VTPGKEIPGGS 132 (176)
T ss_pred -----------cEEcCccEEEEeEECCCcEEecCceEeCCcEECCCcEEccCCc-------ccCCcCCCCCe
Confidence 4688888888888999999998888887766555555444444 44444555544
No 114
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.11 E-value=3.5e-10 Score=89.16 Aligned_cols=71 Identities=20% Similarity=0.367 Sum_probs=56.4
Q ss_pred ECCCcEEcc-eEEe-ceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCEECC
Q 015296 291 IGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGD 368 (409)
Q Consensus 291 Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~ 368 (409)
|++++.|+. +.|. +++||++|.|+++|.|++++++++ ..|+++++|.++++++++.||+
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~-------------------~~i~~~~~i~~sii~~~~~v~~ 62 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSN-------------------STVRDHSWVKSSIVGWNSTVGR 62 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCC-------------------CEECCCCEEeCCEEeCCCEECC
Confidence 355555555 5554 899999999999999999999887 4699999999999999999999
Q ss_pred CcEEeCCCccCC
Q 015296 369 NVKIVNSDSVQE 380 (409)
Q Consensus 369 ~~~i~~~~~v~~ 380 (409)
++.+.++..+++
T Consensus 63 ~~~~~~~~~ig~ 74 (80)
T cd05824 63 WTRLENVTVLGD 74 (80)
T ss_pred CcEEecCEEECC
Confidence 988865433333
No 115
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.10 E-value=7.8e-10 Score=114.41 Aligned_cols=99 Identities=20% Similarity=0.201 Sum_probs=58.0
Q ss_pred EEEEECCCcEEcc-eEEe-ceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEc-ceEeC--
Q 015296 287 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIID-- 361 (409)
Q Consensus 287 ~~~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~-~~ii~-- 361 (409)
.+++|+++|.|++ |.|. +++||++|+|+++|.+++++|+.++.+...+. + |. +.||+++.|. ++++.
T Consensus 305 ~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~----~--~~--~~Ig~~~~ig~~~~~~~~ 376 (448)
T PRK14357 305 EKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENTKAQHLTY----L--GD--ATVGKNVNIGAGTITCNY 376 (448)
T ss_pred EEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEcCCcCcccccc----c--cC--cEECCCcEECCCcccccc
Confidence 4566666666777 7776 68888888888888888888877654332211 1 11 2466666664 33322
Q ss_pred -----CCCEECCCcEEeCCCccCCceeecCCeEEeCC
Q 015296 362 -----KNARIGDNVKIVNSDSVQEAARETDGYFIKSG 393 (409)
Q Consensus 362 -----~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g 393 (409)
..++||+++.|..++.+....+++++++|+.|
T Consensus 377 ~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag 413 (448)
T PRK14357 377 DGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAG 413 (448)
T ss_pred cccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCC
Confidence 23455555555555545555566666666666
No 116
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.10 E-value=1.6e-10 Score=105.80 Aligned_cols=62 Identities=27% Similarity=0.383 Sum_probs=56.4
Q ss_pred eEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHH
Q 015296 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSR 156 (409)
Q Consensus 90 m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~ 156 (409)
|.+||||||+||||++ .||+|+|++| +|||+|+++++.++++++|+++++++.+.++.|+.+
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~G-kplI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~ 62 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCG-RCLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINS 62 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECC-EEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhh
Confidence 6899999999999975 7999999998 599999999999999999999999888888777764
No 117
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.10 E-value=3.9e-10 Score=117.99 Aligned_cols=83 Identities=14% Similarity=0.259 Sum_probs=65.7
Q ss_pred EEEEECCCcEEcc-eEEe-ceEECCCCEECCCCEEeceEEeCCcccccccch-hhhccCCCcceEeCCCCEEc-ceEeCC
Q 015296 287 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADR-RFLAAKGSVPIGIGKNSHIK-RAIIDK 362 (409)
Q Consensus 287 ~~~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~-~~~~~~g~~~v~Ig~~~~I~-~~ii~~ 362 (409)
.++.||+||.|++ |.|+ +++||++|+|+++|+|++++|++++.++.++.. ...++++. .||+++++. +++|++
T Consensus 269 ~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~---~ig~~~~i~~~~~Ig~ 345 (481)
T PRK14358 269 DTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGS---DVGPFARLRPGTVLGE 345 (481)
T ss_pred CCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCce---EECCccEEcCCcEECC
Confidence 3478999999998 9998 788999999999999999999999988766542 34444553 577777775 678888
Q ss_pred CCEECCCcEE
Q 015296 363 NARIGDNVKI 372 (409)
Q Consensus 363 n~~IG~~~~i 372 (409)
+++||+++.|
T Consensus 346 ~~~Ig~~~~i 355 (481)
T PRK14358 346 GVHIGNFVET 355 (481)
T ss_pred CCEECCCEEE
Confidence 8888886554
No 118
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.09 E-value=5.7e-10 Score=106.87 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=15.7
Q ss_pred EEECCCcEEcceEEe-ceEECCCCEECCCCEEec
Q 015296 289 SVIGEGCVIKNCKIH-HSVVGLRSCISEGAIIED 321 (409)
Q Consensus 289 ~~Ig~g~~I~~~~I~-~svIg~~~~Ig~~~~I~~ 321 (409)
+.|++|++|....|. ++.||++|.|+.++.|+.
T Consensus 113 a~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~ 146 (269)
T TIGR00965 113 AFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGS 146 (269)
T ss_pred cEECCCCEEeeeEEcCCcEECCCCEECCCcEECC
Confidence 445555555543332 444555555555554443
No 119
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1.6e-10 Score=119.64 Aligned_cols=93 Identities=18% Similarity=0.328 Sum_probs=82.5
Q ss_pred CCccCCCcccCCceEe-cceEEEEEECCCcEEcc-eEEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCC
Q 015296 267 APIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGS 344 (409)
Q Consensus 267 ~~i~~~~~~~~p~~i~-~~~i~~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~ 344 (409)
..+..+..+..+++|+ +++|.|++||.||.||. |.|.+|.||.+|+||+||.|++++|+++
T Consensus 328 ~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~----------------- 390 (673)
T KOG1461|consen 328 VIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDD----------------- 390 (673)
T ss_pred ccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecC-----------------
Confidence 4444555667788888 78999999999999999 9999999999999999999999999998
Q ss_pred cceEeCCCCEEc-ceEeCCCCEECCCcEEeCCCcc
Q 015296 345 VPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSV 378 (409)
Q Consensus 345 ~~v~Ig~~~~I~-~~ii~~n~~IG~~~~i~~~~~v 378 (409)
+.|+++++++ +|||+.++.+|++-++.....+
T Consensus 391 --v~i~~~~~l~~g~vl~~~VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 391 --VKIGEGAILKPGSVLGFGVVVGRNFVLPKNSKV 423 (673)
T ss_pred --cEeCCCcccCCCcEEeeeeEeCCCccccccccc
Confidence 6899999995 9999999999999998776555
No 120
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.09 E-value=1e-09 Score=102.21 Aligned_cols=151 Identities=19% Similarity=0.186 Sum_probs=97.4
Q ss_pred EEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCC-CceEEEEcccChhhHHHHHHH------------H
Q 015296 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSR------------A 157 (409)
Q Consensus 91 ~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~G-i~~I~Vv~~~~~~~i~~~l~~------------~ 157 (409)
.+||||||.|+||+. ..||+|+|++| +|||+|+++++...+ +++|+|++++........+.. .
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~G-kpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGG-KPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYGLSKVVKIVEGG 77 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECC-eEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhcccCCCeEEECCc
Confidence 589999999999975 27999999998 599999999999986 899999998776444332210 0
Q ss_pred HH------HHHHHc---CCCeEEEEecCCccc-------------C-----------CC-------------------cE
Q 015296 158 YA------KQLKAM---KVDTTILGLDDERAK-------------E-----------MP-------------------YI 185 (409)
Q Consensus 158 ~~------e~~~~~---~~d~til~~~~~~~~-------------e-----------kp-------------------~~ 185 (409)
.. ..+... +.+.-++...+.++. . .+ ..
T Consensus 78 ~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~~~~ 157 (218)
T cd02516 78 ATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGAAIPAVPVTDTIKRVDDDGVVVETLDREKLWA 157 (218)
T ss_pred hHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCcEEEEEeccccEEEecCCCceeecCChHHhhh
Confidence 00 111222 122211111111110 0 00 11
Q ss_pred EEEEEEEEeHHHHHHHHhhcCCCCCcchhchHHHHHhCCCeEEEEEecCeEEEcCCHHHHHH
Q 015296 186 ASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYN 247 (409)
Q Consensus 186 ~~~Giyif~~~vl~~ll~~~~~~~~d~~~dli~~ll~~g~~V~a~~~~gyw~DIgt~edy~~ 247 (409)
..++ ++|+.+.|.+++...... ..+++|...-+.+.+.++..+..+..-+||+|++||..
T Consensus 158 ~~~P-~~f~~~~~~~~~~~~~~~-~~~~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 158 AQTP-QAFRLDLLLKAHRQASEE-GEEFTDDASLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred hcCC-CcccHHHHHHHHHHHHhc-CCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 1455 789999998887654432 23456766666666777888776666679999999954
No 121
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.08 E-value=7.5e-10 Score=114.47 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=79.8
Q ss_pred CCccCCCcccCCceEe-cceEEEEEECCCcEEcc-eEEe-ceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCC
Q 015296 267 APIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKG 343 (409)
Q Consensus 267 ~~i~~~~~~~~p~~i~-~~~i~~~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g 343 (409)
+.|...+.+...+.|. .+.+.+++||++|+|++ |.|. +++||.+|.||++|.|.++.|+.+..+...... . +
T Consensus 281 ~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i----~-~ 355 (446)
T PRK14353 281 VVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYI----G-D 355 (446)
T ss_pred CEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEE----c-C
Confidence 3333333444444444 35566799999999999 9998 899999999999999999999887665443221 0 1
Q ss_pred CcceEeCCCCEEc-ceEe-------CCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcC
Q 015296 344 SVPIGIGKNSHIK-RAII-------DKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 399 (409)
Q Consensus 344 ~~~v~Ig~~~~I~-~~ii-------~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~ 399 (409)
+.||+++.|. ++++ ..++.||++|+|..++.+...++++++++|+.| .+|-+
T Consensus 356 ---~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~-s~v~~ 415 (446)
T PRK14353 356 ---ATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASG-SVITE 415 (446)
T ss_pred ---cEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCC-CEECc
Confidence 1355555554 3333 224566666666665555566677777777777 34433
No 122
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.07 E-value=7.3e-10 Score=115.19 Aligned_cols=75 Identities=16% Similarity=0.263 Sum_probs=52.2
Q ss_pred EEEECCCcEEcc-eEEe-ceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCE
Q 015296 288 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNAR 365 (409)
Q Consensus 288 ~~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~ 365 (409)
++.||++|.|++ |.|. +++||++|.|+++|+|++++|++++. |+++++|.+++|++++.
T Consensus 268 ~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~-------------------I~~~~~i~~~~i~~~~~ 328 (459)
T PRK14355 268 GVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVT-------------------VKAGSVLEDSVVGDDVA 328 (459)
T ss_pred CeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCE-------------------ECCCeEEeCCEECCCCE
Confidence 467888888888 8887 89999999999999999999998855 44555554555555444
Q ss_pred ECCCcEEeCCCccCCc
Q 015296 366 IGDNVKIVNSDSVQEA 381 (409)
Q Consensus 366 IG~~~~i~~~~~v~~~ 381 (409)
||.++.+..++.++++
T Consensus 329 ig~~~~i~~~~~i~~~ 344 (459)
T PRK14355 329 IGPMAHLRPGTELSAH 344 (459)
T ss_pred ECCCCEECCCCEeCCC
Confidence 4444444443333333
No 123
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.07 E-value=8.1e-10 Score=115.61 Aligned_cols=99 Identities=18% Similarity=0.210 Sum_probs=66.6
Q ss_pred EEEEEECCCcEEcc-eEEe-ceEECCCCEECCCCEEeceEEeCCcccccccch-hhhccCCCcceEeCCCCEEc------
Q 015296 286 VTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADR-RFLAAKGSVPIGIGKNSHIK------ 356 (409)
Q Consensus 286 i~~~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~-~~~~~~g~~~v~Ig~~~~I~------ 356 (409)
+.+++|+++|.|+. |.+. +++||.++.|+.++.+.+++|++++.+...... ...+++++ .||.++.+.
T Consensus 320 ~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~---~IG~~~~i~~~~~~~ 396 (482)
T PRK14352 320 GSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGTKVPHLTYVGDADIGEHS---NIGASSVFVNYDGVN 396 (482)
T ss_pred eecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCCcEEccCceecccEECCCc---EECCCcEEecccccc
Confidence 45688999999999 9998 999999999999999999999888766543221 22333333 455555443
Q ss_pred --ceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCC
Q 015296 357 --RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 393 (409)
Q Consensus 357 --~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g 393 (409)
+++||+|+.||.++.|..+ .+++++++|+.|
T Consensus 397 ~~~~~IGd~~~iG~~~~i~~~------~~Ig~~~~igag 429 (482)
T PRK14352 397 KHRTTIGSHVRTGSDTMFVAP------VTVGDGAYTGAG 429 (482)
T ss_pred CCCCeECCCcEECCCCEEeCC------CEECCCcEECCC
Confidence 2555555555555555554 555555556555
No 124
>PLN02296 carbonate dehydratase
Probab=99.06 E-value=1.1e-09 Score=105.88 Aligned_cols=99 Identities=22% Similarity=0.343 Sum_probs=74.0
Q ss_pred EECCCcEEcc-eEEe-ceEECCCCEECCCCEEece----EEeCCcccccccchhhhccCCCcceEeCCCCEEc-------
Q 015296 290 VIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDT----LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK------- 356 (409)
Q Consensus 290 ~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~s----~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~------- 356 (409)
.|+++++|.+ ++|. ++.||++|.|+.+|+|... .|+++ +.|++++.|.
T Consensus 54 ~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~-------------------~~I~d~~vI~~~~~~~~ 114 (269)
T PLN02296 54 VVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSG-------------------TNIQDNSLVHVAKTNLS 114 (269)
T ss_pred ccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCC-------------------CEECCCCEEEeCCCccc
Confidence 3556666665 5555 7788888888888888744 34443 3577777774
Q ss_pred ----ceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCccC
Q 015296 357 ----RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 409 (409)
Q Consensus 357 ----~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtvi 409 (409)
.++||+++.||.+|+|. ++.+++.+.++.+++|.+| ++|+++++|++|++|
T Consensus 115 g~~~~siIG~~v~IG~~avI~-g~~Igd~v~IG~ga~I~~g-v~Ig~~a~IgagSvV 169 (269)
T PLN02296 115 GKVLPTIIGDNVTIGHSAVLH-GCTVEDEAFVGMGATLLDG-VVVEKHAMVAAGALV 169 (269)
T ss_pred CCCCCcEeCCCCEECCCceec-CCEECCCcEECCCcEECCC-eEECCCCEECCCCEE
Confidence 57888899999888774 5678888888888888888 788888888888764
No 125
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.06 E-value=7e-10 Score=115.19 Aligned_cols=82 Identities=16% Similarity=0.212 Sum_probs=60.0
Q ss_pred EEEECCCcEEcc-eEEe-ceEECCCCEECCCCEEeceEEeCCcccccccch-hhhccCCCcceEeCCCCEEc-ceEeCCC
Q 015296 288 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADR-RFLAAKGSVPIGIGKNSHIK-RAIIDKN 363 (409)
Q Consensus 288 ~~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~-~~~~~~g~~~v~Ig~~~~I~-~~ii~~n 363 (409)
++.||++|.|++ |.|. +++||++|.|+++|.|++++|++++.++.++.. .+.++++. .||++++|. ++.|+++
T Consensus 265 ~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~---~Ig~~~~i~~~~~i~~~ 341 (456)
T PRK09451 265 TLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAAC---TIGPFARLRPGAELAEG 341 (456)
T ss_pred cEEECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCc---EecCceEEeCCCEECCC
Confidence 467899999998 8888 899999999999999999999998776655432 33444443 466666664 5666666
Q ss_pred CEECCCcEE
Q 015296 364 ARIGDNVKI 372 (409)
Q Consensus 364 ~~IG~~~~i 372 (409)
+.||+++.|
T Consensus 342 ~~ig~~~~i 350 (456)
T PRK09451 342 AHVGNFVEM 350 (456)
T ss_pred ceeccceee
Confidence 666665544
No 126
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.06 E-value=1.6e-09 Score=94.60 Aligned_cols=41 Identities=10% Similarity=0.127 Sum_probs=21.7
Q ss_pred eEeCCCCEEc-ceEeCCCCEECCCcEEeCCCccCCceeecCC
Q 015296 347 IGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDG 387 (409)
Q Consensus 347 v~Ig~~~~I~-~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g 387 (409)
+.||+++.|. +++|..++.||+++.|..++.+.+..+++++
T Consensus 76 v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~ 117 (139)
T cd03350 76 VIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR 117 (139)
T ss_pred eEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc
Confidence 3455555553 5555555555555555555555555555544
No 127
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.06 E-value=9.6e-10 Score=101.67 Aligned_cols=98 Identities=12% Similarity=0.212 Sum_probs=74.0
Q ss_pred ECCCcEEcc-eEEe-ceEECCCCEECCCCEEece----EEeCCcccccccchhhhccCCCcceEeCCCCEEc-----ceE
Q 015296 291 IGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDT----LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-----RAI 359 (409)
Q Consensus 291 Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~s----~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~-----~~i 359 (409)
|+++++|.+ +.|. +++||++|.|+.+|+|+.+ +|+.+ +.||++|.|+ +++
T Consensus 13 i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~-------------------~~Ig~~~~I~~~~~~~si 73 (196)
T PRK13627 13 VHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAG-------------------ANLQDGCIMHGYCDTDTI 73 (196)
T ss_pred cCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCC-------------------CEECCCCEEeCCCCCCCE
Confidence 345555555 4444 7888999999999988653 44444 3578888874 478
Q ss_pred eCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCccC
Q 015296 360 IDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 409 (409)
Q Consensus 360 i~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtvi 409 (409)
|++++.||.++.+. ++.+++++.+|.+++|..| ++|++++.|++|++|
T Consensus 74 Ig~~~~Ig~~a~i~-g~vIG~~v~IG~ga~V~~g-~~IG~~s~Vgags~V 121 (196)
T PRK13627 74 VGENGHIGHGAILH-GCVIGRDALVGMNSVIMDG-AVIGEESIVAAMSFV 121 (196)
T ss_pred ECCCCEECCCcEEe-eEEECCCCEECcCCccCCC-cEECCCCEEcCCCEE
Confidence 88999999888775 4568888888888888888 789999999998864
No 128
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.05 E-value=4.2e-09 Score=101.13 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=53.8
Q ss_pred CCccccCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhC-CCceEEEEcccCh
Q 015296 82 LDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS 147 (409)
Q Consensus 82 ~~~~~~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~-Gi~~I~Vv~~~~~ 147 (409)
.+++.++++.+||||||.|+||+ ...||+|++++| +|+|+|+++.+.+. ++++|+|++++..
T Consensus 17 ~~~~~~~~i~aIILAAG~gsRmg---~~~pKqll~l~G-kpll~~tl~~~~~~~~i~~IvVV~~~~~ 79 (252)
T PLN02728 17 SAVVKEKSVSVILLAGGVGKRMG---ANMPKQYLPLLG-QPIALYSLYTFARMPEVKEIVVVCDPSY 79 (252)
T ss_pred ccccccCceEEEEEcccccccCC---CCCCcceeEECC-eEHHHHHHHHHHhCCCCCeEEEEeCHHH
Confidence 44566777899999999999996 357999999998 59999999999985 8999999999764
No 129
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.05 E-value=1.8e-09 Score=97.98 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=49.3
Q ss_pred EEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHH
Q 015296 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRH 153 (409)
Q Consensus 92 aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~ 153 (409)
+||||||.|+||+ .||+|+|++| +|||+|+++.+.+.++++|+|++++..+.+.++
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g-~pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~ 57 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKG-KTILEHVVDNALRLFFDEVILVLGHEADELVAL 57 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCC-eeHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHH
Confidence 7999999999997 4899999998 599999999999999999999999876554433
No 130
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.04 E-value=1.5e-09 Score=100.12 Aligned_cols=97 Identities=13% Similarity=0.230 Sum_probs=52.0
Q ss_pred ECCCcEEcc-eEEe-ceEECCCCEECCCCEEec----eEEeCCcccccccchhhhccCCCcceEeCCCCEE-----cceE
Q 015296 291 IGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED----TLLMGADYYETDADRRFLAAKGSVPIGIGKNSHI-----KRAI 359 (409)
Q Consensus 291 Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~----s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I-----~~~i 359 (409)
|+++++|.. +.|. ++.||++|.|+++|.|+. .+|++++ .||++++| .+++
T Consensus 11 i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t-------------------~Ig~~~~I~~~~~~~si 71 (192)
T TIGR02287 11 VHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGA-------------------NIQDNCVMHGFPGQDTV 71 (192)
T ss_pred CCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCC-------------------EECCCeEEeccCCCCCe
Confidence 456666655 5554 678888888888888763 3444432 34444444 2344
Q ss_pred eCCCC-----------EECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCc
Q 015296 360 IDKNA-----------RIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGT 407 (409)
Q Consensus 360 i~~n~-----------~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gt 407 (409)
|++++ .||++|.|..++.+.+.+.++++++|+.| ..|.++..||+++
T Consensus 72 Ig~~~~Ig~~a~I~~siIg~~~~IG~ga~I~~g~~IG~~s~Vgag-s~V~~~~~ip~~~ 129 (192)
T TIGR02287 72 VEENGHVGHGAILHGCIVGRNALVGMNAVVMDGAVIGENSIVAAS-AFVKAGAEMPAQY 129 (192)
T ss_pred ECCCCEECCCCEEcCCEECCCCEECCCcccCCCeEECCCCEEcCC-CEECCCCEECCCe
Confidence 44444 44444444444444444555555555555 3444555555444
No 131
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.04 E-value=4.1e-09 Score=96.40 Aligned_cols=132 Identities=22% Similarity=0.306 Sum_probs=61.2
Q ss_pred cCeEEEcCCHHHHHHHHHhhccCCCCCCcccCCCCCccCCCcccCCceEecceEEEEEECCCcEEcc-eEEe-ceEECCC
Q 015296 233 DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLR 310 (409)
Q Consensus 233 ~gyw~DIgt~edy~~an~~ll~~~~~~~~~~~~~~~i~~~~~~~~p~~i~~~~i~~~~Ig~g~~I~~-~~I~-~svIg~~ 310 (409)
+.++..++.++...+....+.........+ +.+.+.+. .++.||++|.|+. |.|. +++||++
T Consensus 60 ~~~iiai~~~~~~~~i~~~l~~~g~~~~~~------------i~~~a~i~----~~~~ig~~~~i~~~~~i~~~~~ig~~ 123 (201)
T TIGR03570 60 VDLVVAIGDNKLRRRLFEKLKAKGYRFATL------------IHPSAIVS----PSASIGEGTVIMAGAVINPDVRIGDN 123 (201)
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCcceEE------------ecCCeEEC----CCCEECCCCEECCCCEECCCCEECCC
Confidence 346777776666666655554333211111 11222222 1234555555555 4443 4555555
Q ss_pred CEECCCCEEec-eEEeCCcccccccchhhhccCCCcceEeCCCCEEc-ceEeCCCCEECCCcEEeCCCccCCceeecCCe
Q 015296 311 SCISEGAIIED-TLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGY 388 (409)
Q Consensus 311 ~~Ig~~~~I~~-s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~-~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~ 388 (409)
|.|+.++.|++ +.|+++ +.|+.++.+. ++.|++++.||.++.+. +++.+++++
T Consensus 124 ~~i~~~~~i~~~~~ig~~-------------------~~i~~~~~i~~~~~ig~~~~ig~~~~v~------~~~~i~~~~ 178 (201)
T TIGR03570 124 VIINTGAIVEHDCVIGDY-------------------VHIAPGVTLSGGVVIGEGVFIGAGATII------QGVTIGAGA 178 (201)
T ss_pred cEECCCCEEcCCCEECCC-------------------CEECCCCEEeCCcEECCCCEECCCCEEe------CCCEECCCC
Confidence 55555555542 222222 1344444443 44445555555444444 445555555
Q ss_pred EEeCCeEEEcCCcEeCCCcc
Q 015296 389 FIKSGIVTIIKDALIPSGTI 408 (409)
Q Consensus 389 ~i~~g~v~i~~~~~Ip~gtv 408 (409)
+|+.| .+|.++ +|++++
T Consensus 179 ~i~~~-~~v~~~--~~~~~~ 195 (201)
T TIGR03570 179 IVGAG-AVVTKD--IPDGGV 195 (201)
T ss_pred EECCC-CEECCc--CCCCCE
Confidence 56555 333332 555543
No 132
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.03 E-value=1.4e-09 Score=97.78 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=13.5
Q ss_pred ccCCceeecCCeEEeCCeEEEcCCcEeCCCcc
Q 015296 377 SVQEAARETDGYFIKSGIVTIIKDALIPSGTI 408 (409)
Q Consensus 377 ~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtv 408 (409)
.++++++++.+++|.+| +.|+++++|+++++
T Consensus 85 ~IGd~~~Ig~~a~I~~g-v~Ig~~~~Igagsv 115 (164)
T cd04646 85 KIGNNNVFESKSFVGKN-VIITDGCIIGAGCK 115 (164)
T ss_pred EECCCCEEeCCCEECCC-CEECCCCEEeCCeE
Confidence 33444444444444444 44444444444443
No 133
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.03 E-value=1.7e-09 Score=95.95 Aligned_cols=96 Identities=19% Similarity=0.276 Sum_probs=56.2
Q ss_pred ECCCcEEcc-eEEe-ceEECCCCEECCCCEEece----EEeCCcccccccchhhhccCCCcceEeCCCCEEcc-----eE
Q 015296 291 IGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDT----LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR-----AI 359 (409)
Q Consensus 291 Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~s----~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~-----~i 359 (409)
++++|+|.+ |.|. +++||++|.|+++++|... +|++++ .|+++++|.. ++
T Consensus 2 ~~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~-------------------~I~~~~~I~~~~~~~~~ 62 (153)
T cd04645 2 IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERT-------------------NIQDGSVLHVDPGYPTI 62 (153)
T ss_pred ccCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCC-------------------EECCCcEEecCCCCCeE
Confidence 455666666 5555 7888888888888888754 565553 3555555554 36
Q ss_pred eCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCc
Q 015296 360 IDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGT 407 (409)
Q Consensus 360 i~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gt 407 (409)
|++++.|+.++++.+ ..+++.+.++.++.+..+ ++|++++.|++++
T Consensus 63 Ig~~~~I~~~~~i~~-~~Ig~~~~Ig~~~~v~~~-~~ig~~~~ig~~~ 108 (153)
T cd04645 63 IGDNVTVGHGAVLHG-CTIGDNCLIGMGAIILDG-AVIGKGSIVAAGS 108 (153)
T ss_pred EcCCcEECCCcEEee-eEECCCCEECCCCEEcCC-CEECCCCEECCCC
Confidence 666666666655543 444555555544444444 4444444444443
No 134
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.03 E-value=3.1e-09 Score=95.17 Aligned_cols=108 Identities=19% Similarity=0.221 Sum_probs=69.2
Q ss_pred EEECCCcEEcc-eEEe-c---eEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCC
Q 015296 289 SVIGEGCVIKN-CKIH-H---SVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKN 363 (409)
Q Consensus 289 ~~Ig~g~~I~~-~~I~-~---svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n 363 (409)
..||++|+|++ |.|. + +.||++|.|+++|.|+++......-. ......++++ +.|++++.+.+++|+++
T Consensus 22 I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~---~~~~v~Ig~~---~~Ig~~~~i~~~~Ig~~ 95 (161)
T cd03359 22 IVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGV---AFFPLHIGDY---VFIGENCVVNAAQIGSY 95 (161)
T ss_pred EEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCc---cccCeEECCc---cEECCCCEEEeeEEcCC
Confidence 46777777777 7666 3 69999999999999987643222100 0011122223 25777777777888888
Q ss_pred CEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEe
Q 015296 364 ARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALI 403 (409)
Q Consensus 364 ~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~I 403 (409)
+.||++++|..+..+++.+.++++++|..+ ..|++++++
T Consensus 96 v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~-~~i~~~~vv 134 (161)
T cd03359 96 VHIGKNCVIGRRCIIKDCVKILDGTVVPPD-TVIPPYSVV 134 (161)
T ss_pred cEECCCCEEcCCCEECCCcEECCCCEECCC-CEeCCCCEE
Confidence 888888888776666666666665555555 445555544
No 135
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.02 E-value=1.6e-09 Score=91.32 Aligned_cols=83 Identities=20% Similarity=0.275 Sum_probs=56.6
Q ss_pred EEEECCCcEEcc-eEEe-ceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCE
Q 015296 288 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNAR 365 (409)
Q Consensus 288 ~~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~ 365 (409)
++.||++|.|+. +.|. +++||++|.|++++.|.+..+.+. .+..++.+.+++|++++.
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~--------------------~~~~~~~~~~~~Ig~~~~ 75 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRS--------------------KIYRKWELKGTTVKRGAS 75 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCcc--------------------ccccccccCCcEECCCcE
Confidence 467777777777 6664 677777777777777766554443 245567788888888888
Q ss_pred ECCCcEEeCCCccCCceeecCCeEE
Q 015296 366 IGDNVKIVNSDSVQEAARETDGYFI 390 (409)
Q Consensus 366 IG~~~~i~~~~~v~~~~~~~~g~~i 390 (409)
||.++.+.++..+++++.++.++++
T Consensus 76 Ig~~~~v~~~~~ig~~~~i~~~~~v 100 (119)
T cd03358 76 IGANATILPGVTIGEYALVGAGAVV 100 (119)
T ss_pred ECcCCEEeCCcEECCCCEEccCCEE
Confidence 8888888766665555555544444
No 136
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.01 E-value=3.2e-09 Score=97.40 Aligned_cols=56 Identities=23% Similarity=0.289 Sum_probs=48.9
Q ss_pred cCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChh
Q 015296 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA 148 (409)
Q Consensus 87 ~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~ 148 (409)
|++|.+||||||.|+||+ ..||+|+|++| +|||+|+++.+. .++++|+|+++...+
T Consensus 1 ~~~~~~vILA~G~s~Rm~----~~~K~ll~~~g-~~ll~~~i~~l~-~~~~~i~vv~~~~~~ 56 (193)
T PRK00317 1 MPPITGVILAGGRSRRMG----GVDKGLQELNG-KPLIQHVIERLA-PQVDEIVINANRNLA 56 (193)
T ss_pred CCCceEEEEcCCCcccCC----CCCCceeEECC-EEHHHHHHHHHh-hhCCEEEEECCCChH
Confidence 567899999999999995 26899999998 599999999998 779999999886543
No 137
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.01 E-value=2.1e-09 Score=111.55 Aligned_cols=120 Identities=21% Similarity=0.301 Sum_probs=80.3
Q ss_pred CceEecceEEEEEECCCcEEcc-eEEe-ceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEE
Q 015296 278 PSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHI 355 (409)
Q Consensus 278 p~~i~~~~i~~~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I 355 (409)
.+.|..+.+.+++||++|.|+. |.|. +++||++|+|+.++.|.++.|+++++...... + +. ..||+++.|
T Consensus 306 ~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~----~--~~--~~ig~~~~i 377 (458)
T PRK14354 306 GVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTY----I--GD--AEVGENVNI 377 (458)
T ss_pred CCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceee----e--cC--cccCCceEE
Confidence 3334344456789999999999 9999 89999999999999999999988776544431 1 11 246666666
Q ss_pred c-ceEeCC-------CCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCcc
Q 015296 356 K-RAIIDK-------NARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 408 (409)
Q Consensus 356 ~-~~ii~~-------n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtv 408 (409)
. ++++.+ .+.||+++++...+.+....+++++++|+.| .+|.++ ||++++
T Consensus 378 g~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~-~~v~~~--~~~~~~ 435 (458)
T PRK14354 378 GCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAG-STITKD--VPEDAL 435 (458)
T ss_pred cCceeecccccccccCCEECCCcEEccCCEEeCCcEECCCCEECCC-CEECCC--CCCCCE
Confidence 4 333322 4566666666666666666677777777777 444443 355543
No 138
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=98.99 E-value=5.6e-09 Score=100.79 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=25.4
Q ss_pred ceEeCCCCEEc-ceEeCCCCEECCCcEEeCCCccCCceeecC
Q 015296 346 PIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETD 386 (409)
Q Consensus 346 ~v~Ig~~~~I~-~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~ 386 (409)
|+.||+++.|. +|+|..++.||++|+|..++.+..+..+.+
T Consensus 176 ~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~ 217 (272)
T PRK11830 176 PVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYD 217 (272)
T ss_pred CeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECc
Confidence 35667777664 666666666666666666666655555553
No 139
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=98.99 E-value=6.2e-09 Score=98.31 Aligned_cols=160 Identities=14% Similarity=0.077 Sum_probs=100.3
Q ss_pred ceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhC-CCceEEEEcccCh-hhHHHHHHH------HHH-
Q 015296 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSR------AYA- 159 (409)
Q Consensus 89 ~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~-Gi~~I~Vv~~~~~-~~i~~~l~~------~~~- 159 (409)
++.+||||||.|+||+ ...||+|++++| +|||.|+++++.++ .+++|+|+++... ..+.+++.+ .+.
T Consensus 2 ~~~~iIlAaG~g~R~g---~~~~K~l~~l~g-kpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (230)
T PRK13385 2 NYELIFLAAGQGKRMN---APLNKMWLDLVG-EPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVADQRVEV 77 (230)
T ss_pred ceEEEEECCeeccccC---CCCCcceeEECC-eEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcCCCceEE
Confidence 3679999999999996 246999999998 59999999999986 5899999998643 223332221 000
Q ss_pred ------------HHHHHcC-CCeEEE-------------------------------------EecCCcc---cCC-CcE
Q 015296 160 ------------KQLKAMK-VDTTIL-------------------------------------GLDDERA---KEM-PYI 185 (409)
Q Consensus 160 ------------e~~~~~~-~d~til-------------------------------------~~~~~~~---~ek-p~~ 185 (409)
..+.... .+.-++ ...+... .++ ..+
T Consensus 78 v~~g~~r~~sv~~gl~~~~~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~~~~~~~dti~~~~~~~~~~~i~r~~~~ 157 (230)
T PRK13385 78 VKGGTERQESVAAGLDRIGNEDVILVHDGARPFLTQDIIDRLLEGVAKYGAAICAVEVKDTVKRVKDKQVIETVDRNELW 157 (230)
T ss_pred cCCCchHHHHHHHHHHhccCCCeEEEccCCCCCCCHHHHHHHHHHHhhCCcEEEEEeccceEEEEcCCeeEeccCHHHHh
Confidence 0111111 111111 0000000 011 022
Q ss_pred EEEEEEEEeHHHHHHHHhhcCCCCCcchhchHHHHHhCCCeEEEEEecCeEEEcCCHHHHHHHHHhhc
Q 015296 186 ASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 253 (409)
Q Consensus 186 ~~~Giyif~~~vl~~ll~~~~~~~~d~~~dli~~ll~~g~~V~a~~~~gyw~DIgt~edy~~an~~ll 253 (409)
..-+.+.|+.+.|.+..+....+ ..+.+|....+.+.|..|..++.+...+.|.|++|+..|...+.
T Consensus 158 ~~qtpq~f~~~~l~~~~~~~~~~-~~~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~ 224 (230)
T PRK13385 158 QGQTPQAFELKILQKAHRLASEQ-QFLGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQ 224 (230)
T ss_pred hhcCCceeeHHHHHHHHHHHHhc-CCCcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHh
Confidence 23346778888776665532112 22346666666777889999988888999999999999986553
No 140
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.99 E-value=2.8e-09 Score=83.49 Aligned_cols=67 Identities=25% Similarity=0.401 Sum_probs=59.2
Q ss_pred cceEEEEEECCCcEEcc-eEEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcc-eEe
Q 015296 283 DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR-AII 360 (409)
Q Consensus 283 ~~~i~~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~-~ii 360 (409)
++.+.+++|+++|+|++ +.|++++|+++|.|+++|.|.+++++++ +.|++++.+.+ +++
T Consensus 11 ~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~-------------------~~i~~~~~i~~~~~i 71 (79)
T cd03356 11 NAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDN-------------------AVIGENVRVVNLCII 71 (79)
T ss_pred CCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCC-------------------CEECCCCEEcCCeEE
Confidence 45667789999999998 9999999999999999999999999887 46999999986 888
Q ss_pred CCCCEECC
Q 015296 361 DKNARIGD 368 (409)
Q Consensus 361 ~~n~~IG~ 368 (409)
+++++||+
T Consensus 72 g~~~~i~~ 79 (79)
T cd03356 72 GDDVVVED 79 (79)
T ss_pred CCCeEECc
Confidence 88888874
No 141
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=98.99 E-value=2.1e-09 Score=89.25 Aligned_cols=78 Identities=24% Similarity=0.371 Sum_probs=64.6
Q ss_pred cEEcc-eEEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEEe
Q 015296 295 CVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIV 373 (409)
Q Consensus 295 ~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~ 373 (409)
|+|++ |.|++++||.+|+|+ ++.|++++++++ +.|+++++|.+++|++++.||+++.+.
T Consensus 2 ~~i~~~~~i~~s~Ig~~~~I~-~~~I~~svi~~~-------------------~~Ig~~~~I~~siI~~~~~Ig~~~~i~ 61 (104)
T cd04651 2 PYIGRRGEVKNSLVSEGCIIS-GGTVENSVLFRG-------------------VRVGSGSVVEDSVIMPNVGIGRNAVIR 61 (104)
T ss_pred ceecCCCEEEeEEECCCCEEc-CeEEEeCEEeCC-------------------CEECCCCEEEEeEEcCCCEECCCCEEE
Confidence 45666 677789999999999 999999999987 469999999999999999999999995
Q ss_pred CCCccCCceeecCCeEEeCC
Q 015296 374 NSDSVQEAARETDGYFIKSG 393 (409)
Q Consensus 374 ~~~~v~~~~~~~~g~~i~~g 393 (409)
++.+++++.+++++++...
T Consensus 62 -~siig~~~~Ig~~~~v~~~ 80 (104)
T cd04651 62 -RAIIDKNVVIPDGVVIGGD 80 (104)
T ss_pred -eEEECCCCEECCCCEECCC
Confidence 5566666666666666554
No 142
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.98 E-value=1.7e-09 Score=111.93 Aligned_cols=115 Identities=22% Similarity=0.305 Sum_probs=89.5
Q ss_pred cceEEEEEECCCcEEcc-eEEe-ceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEc-ceE
Q 015296 283 DADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAI 359 (409)
Q Consensus 283 ~~~i~~~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~-~~i 359 (409)
.+.+.+++|+++|.|++ |.|. +++||.+|+|++++.|+++++++++.+.... .. +. +.||+++.|. +++
T Consensus 308 ~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~----~~--~~--~~i~~~~~iG~~~~ 379 (450)
T PRK14360 308 YSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLS----YI--GD--ATLGEQVNIGAGTI 379 (450)
T ss_pred eeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEeccce----ec--CC--ceecCCcEECccce
Confidence 34455789999999999 9998 8999999999999999999998876654432 11 11 3577777775 555
Q ss_pred e-------CCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCcc
Q 015296 360 I-------DKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 408 (409)
Q Consensus 360 i-------~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtv 408 (409)
+ +.++.||++|+|+.++.+...++++++++|+.| .+|.++ ||++++
T Consensus 380 ~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~-~~v~~~--~~~~~~ 432 (450)
T PRK14360 380 TANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAG-STITKD--VPDNSL 432 (450)
T ss_pred eccccccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCC-CEECcc--CCCCCE
Confidence 5 347999999999999999999999999999999 555553 466554
No 143
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=98.97 E-value=3.3e-09 Score=98.03 Aligned_cols=55 Identities=24% Similarity=0.428 Sum_probs=47.9
Q ss_pred cccCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEccc
Q 015296 85 EASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF 145 (409)
Q Consensus 85 ~~~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~ 145 (409)
.+.+++.+||||||.++||+ .+|+|+|++|.+|||+|+++.+... +++|+|++++
T Consensus 4 ~~~~~i~~vILAgG~s~RmG-----~~K~ll~~~g~~~ll~~~i~~l~~~-~~~vvvv~~~ 58 (196)
T PRK00560 4 PMIDNIPCVILAGGKSSRMG-----ENKALLPFGSYSSLLEYQYTRLLKL-FKKVYISTKD 58 (196)
T ss_pred ccccCceEEEECCcccccCC-----CCceEEEeCCCCcHHHHHHHHHHHh-CCEEEEEECc
Confidence 34567889999999999996 5899999997249999999999877 8899999886
No 144
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=98.97 E-value=8.8e-09 Score=94.24 Aligned_cols=154 Identities=21% Similarity=0.237 Sum_probs=95.0
Q ss_pred cCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccCh-hhHHHHHHH---------
Q 015296 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS-ASLNRHLSR--------- 156 (409)
Q Consensus 87 ~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~-~~i~~~l~~--------- 156 (409)
+..+-+||||||+++||+ .+|.|+|+.| +|++.++++...+++.++++|+++|.. +.....+..
T Consensus 3 ~~~v~~VvLAAGrssRmG-----~~KlLap~~g-~plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~~~~~~~v~np 76 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMG-----QPKLLAPLDG-KPLVRASAETALSAGLDRVIVVTGHRVAEAVEALLAQLGVTVVVNP 76 (199)
T ss_pred CcceEEEEEcccccccCC-----CcceecccCC-CcHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhccCCeEEEeCc
Confidence 456889999999999998 6899999998 599999999999999999999999972 222333221
Q ss_pred HHH--------HHHHHcCCC--eEEEEecCCccc-------------CCCcE-------EEEEEEEEeHHHHHHHHhhcC
Q 015296 157 AYA--------KQLKAMKVD--TTILGLDDERAK-------------EMPYI-------ASMGIYVISKDVMLNLLRDKF 206 (409)
Q Consensus 157 ~~~--------e~~~~~~~d--~til~~~~~~~~-------------ekp~~-------~~~Giyif~~~vl~~ll~~~~ 206 (409)
.|. ..+++...+ .-++-+-+.+.. +.... .-..=-+|+++.|.++.. ..
T Consensus 77 d~~~Gls~Sl~ag~~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~~~~v~p~~~g~rG~Pv~~~~~~~~~l~~-l~ 155 (199)
T COG2068 77 DYAQGLSTSLKAGLRAADAEGDGVVLMLGDMPQVTPATVRRLIAAFRARGAAVRPVYGGARGHPVLLSKDLFPALAR-LS 155 (199)
T ss_pred chhhhHhHHHHHHHHhcccCCCeEEEEeCCCCCCCHHHHHHHHHhccccCceeeeeccCCcCCceeechhHHHHHhh-cC
Confidence 122 122222222 333333332211 11000 001223477777765533 21
Q ss_pred CCCCcchhchHHHHHh-CCCeEEEEEe-cCeEEEcCCHHHHHHHHHhhc
Q 015296 207 PGANDFGSEVIPGATS-IGMRVQAYLY-DGYWEDIGTIEAFYNANLGIT 253 (409)
Q Consensus 207 ~~~~d~~~dli~~ll~-~g~~V~a~~~-~gyw~DIgt~edy~~an~~ll 253 (409)
. | .-...+++ -+..+..++. .+.-.||+||+||..++..+.
T Consensus 156 G---D---~G~r~ll~~~~~~~~~V~~~~g~llDVDTped~~~a~~~~~ 198 (199)
T COG2068 156 G---D---VGARQLLEEGGLPLVEVEVDAGVLLDVDTPEDLARAQDLLR 198 (199)
T ss_pred C---c---hhHHHHHHhcCcceEeeccCCceEecCCCHHHHHHHHHhhc
Confidence 1 2 12333333 3445555555 678999999999999987553
No 145
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=98.97 E-value=2.3e-09 Score=101.62 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=16.4
Q ss_pred EeCCCCEEc-ceEeCCCCEECCCcEEeCCCccC
Q 015296 348 GIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQ 379 (409)
Q Consensus 348 ~Ig~~~~I~-~~ii~~n~~IG~~~~i~~~~~v~ 379 (409)
.||+++.|. +++|.+++.||+++.|..++.+.
T Consensus 162 ~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~ 194 (231)
T TIGR03532 162 VIEDNVLIGANAVILEGVRVGKGAVVAAGAIVT 194 (231)
T ss_pred EECCCcEECCCCEEcCCCEECCCCEECCCCEEc
Confidence 455555554 45555555555555555444443
No 146
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=98.96 E-value=5.3e-09 Score=93.06 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=21.7
Q ss_pred CCCcEEcc-eEEe-ceEECCCCEECCCCEEece----EEeCCc
Q 015296 292 GEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDT----LLMGAD 328 (409)
Q Consensus 292 g~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~s----~i~~~~ 328 (409)
+++.+|.. +.|. +++||++|.|+++|.|... .|++++
T Consensus 4 ~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~ 46 (154)
T cd04650 4 SPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYS 46 (154)
T ss_pred CCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCC
Confidence 34444444 4343 6777777777777777664 555553
No 147
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=98.96 E-value=2.8e-09 Score=106.65 Aligned_cols=83 Identities=19% Similarity=0.369 Sum_probs=57.6
Q ss_pred EEECCCcEEcc-eEEe-ceEECCCCEECCCCEEeceEEeCCcccccc-cchhhhccCCCcceEeCCCCEEc-ceEeCCCC
Q 015296 289 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETD-ADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNA 364 (409)
Q Consensus 289 ~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~-~~~~~~~~~g~~~v~Ig~~~~I~-~~ii~~n~ 364 (409)
+.||.+|+|.. +.++ +++||++|+||++|+|+|+.|.+++.+..+ ....+.+++++ .||..++++ ++.|++++
T Consensus 269 v~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~---~VGPfA~LRPg~~L~~~~ 345 (460)
T COG1207 269 VEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGA---TVGPFARLRPGAVLGADV 345 (460)
T ss_pred EEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCc---ccCCccccCCcCcccCCC
Confidence 46666666666 6666 788888888888888888888877665552 33345555554 577777776 77777777
Q ss_pred EECCCcEEeC
Q 015296 365 RIGDNVKIVN 374 (409)
Q Consensus 365 ~IG~~~~i~~ 374 (409)
+||..|.+++
T Consensus 346 hIGNFVEvK~ 355 (460)
T COG1207 346 HIGNFVEVKK 355 (460)
T ss_pred eEeeeEEEec
Confidence 7777776643
No 148
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.95 E-value=4.6e-09 Score=108.03 Aligned_cols=106 Identities=21% Similarity=0.291 Sum_probs=57.7
Q ss_pred ceEEEEEECCCcEEcc-eEEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEc-ceEeC
Q 015296 284 ADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIID 361 (409)
Q Consensus 284 ~~i~~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~-~~ii~ 361 (409)
+.+.+++||++|.|++ |.|++|+||.+|.|++.. |+++.+....++. .. .||+++.|. +++++
T Consensus 294 ~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~-~~~~~i~~~~~i~-----d~---------~Ig~~~~ig~~~~~~ 358 (430)
T PRK14359 294 SIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAK-LNGVKAGHLSYLG-----DC---------EIDEGTNIGAGTITC 358 (430)
T ss_pred cEEeCCEECCCCEECCCcEEeccEEcCcEEEcccE-ecccccccccccc-----CC---------EECCCCEECCCceEc
Confidence 3445566777777776 666666666666555533 3444444443332 11 355555554 33333
Q ss_pred C-------CCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCc
Q 015296 362 K-------NARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGT 407 (409)
Q Consensus 362 ~-------n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gt 407 (409)
. .+.||++|.|+.++.+....+++++++|+.| .+|.++ ||+++
T Consensus 359 ~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g-~~v~~~--v~~~~ 408 (430)
T PRK14359 359 NYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAG-STVTKD--VPKGS 408 (430)
T ss_pred cccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCC-CEEccc--cCCCc
Confidence 2 2555555555555555566677777777777 444444 34444
No 149
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=98.92 E-value=8.3e-09 Score=90.09 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=15.3
Q ss_pred eEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCC
Q 015296 358 AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 393 (409)
Q Consensus 358 ~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g 393 (409)
++|++++.||.+++|..+..+++.+.++.+++|..+
T Consensus 76 v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~ 111 (139)
T cd03350 76 VIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQS 111 (139)
T ss_pred eEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCC
Confidence 344444444444444444444444444444444433
No 150
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=98.92 E-value=2.2e-08 Score=95.42 Aligned_cols=47 Identities=26% Similarity=0.121 Sum_probs=43.3
Q ss_pred EEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEccc
Q 015296 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF 145 (409)
Q Consensus 92 aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~ 145 (409)
+||+|+|.||||. +|+|++++| +|||.|+++++.++++++|+|++..
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~G-kPli~~~le~~~~~~~d~VvVvt~~ 48 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFG-KPMIVHVAENANESGADRCIVATDD 48 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCC-cCHHHHHHHHHHhCCCCeEEEEeCH
Confidence 7999999999994 699999998 5999999999999899999998864
No 151
>PLN02472 uncharacterized protein
Probab=98.92 E-value=7.8e-09 Score=98.72 Aligned_cols=98 Identities=11% Similarity=0.231 Sum_probs=68.5
Q ss_pred CCCcEEcc-eEEe-ceEECCCCEECCCCEEece---EEeCCcccccccchhhhccCCCcceEeCCCCEEc----------
Q 015296 292 GEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDT---LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK---------- 356 (409)
Q Consensus 292 g~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~s---~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~---------- 356 (409)
+.+++|.+ +.+. ++.||++|.|+.+++|... +.++. + +.|+++|+|+
T Consensus 63 ~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~---------------~---t~Ig~~~vI~~~~~~~~~i~ 124 (246)
T PLN02472 63 AVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGF---------------C---SNVQERCVLHAAWNSPTGLP 124 (246)
T ss_pred CCCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECC---------------C---CEECCCCEEeecCccccCCC
Confidence 34444444 3333 7788888888888877643 33332 1 3578888874
Q ss_pred -ceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCccC
Q 015296 357 -RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 409 (409)
Q Consensus 357 -~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtvi 409 (409)
+++|+++|.||.+|.|. ++.+++++.+|.+++|.+| ++|++++.|++|++|
T Consensus 125 ~~tvIG~~v~IG~~s~L~-~~~Igd~v~IG~~svI~~g-avIg~~~~Ig~gsvV 176 (246)
T PLN02472 125 AETLIDRYVTIGAYSLLR-SCTIEPECIIGQHSILMEG-SLVETHSILEAGSVL 176 (246)
T ss_pred CCcEECCCCEECCCcEEC-CeEEcCCCEECCCCEECCC-CEECCCCEECCCCEE
Confidence 58888888898888884 5778888888888888887 677777777777653
No 152
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.92 E-value=5e-09 Score=81.76 Aligned_cols=79 Identities=28% Similarity=0.347 Sum_probs=66.9
Q ss_pred EECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEEeCCCccCCceeec
Q 015296 306 VVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARET 385 (409)
Q Consensus 306 vIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~~~~~v~~~~~~~ 385 (409)
+||+++.|+++|.|++++++.+ +.|++++.|.+++|++++.||+++.|. ++.+++++.++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~-------------------~~ig~~~~i~~s~i~~~~~i~~~~~i~-~~~i~~~~~i~ 60 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSVIGRN-------------------CKIGKNVVIDNSYIWDDVTIEDGCTIH-HSIVADGAVIG 60 (79)
T ss_pred CccCCCEECCCCEEeccEECCC-------------------CEECCCCEEeCcEEeCCCEECCCCEEe-CcEEcCCCEEC
Confidence 4789999999999999988877 469999999999999999999999996 67788888888
Q ss_pred CCeEEeCCeEEEcCCcEeCC
Q 015296 386 DGYFIKSGIVTIIKDALIPS 405 (409)
Q Consensus 386 ~g~~i~~g~v~i~~~~~Ip~ 405 (409)
+++.+..+ .+|+++++|++
T Consensus 61 ~~~~i~~~-~~v~~~~~ig~ 79 (79)
T cd05787 61 KGCTIPPG-SLISFGVVIGD 79 (79)
T ss_pred CCCEECCC-CEEeCCcEeCc
Confidence 88888777 66777777653
No 153
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=98.92 E-value=1.1e-08 Score=92.18 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=16.7
Q ss_pred EECCCcEEcc-eEEe-ceEECCCCEECCCCEEe
Q 015296 290 VIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE 320 (409)
Q Consensus 290 ~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~ 320 (409)
.|+++|.|.+ |.|. ++.||++|.|+++|.|.
T Consensus 4 ~ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~ 36 (167)
T cd00710 4 VIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIR 36 (167)
T ss_pred EeCCCeEECCCCEEEeeEEECCCcEECCCcEEe
Confidence 3445555554 4444 55556666666665554
No 154
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.91 E-value=9.5e-09 Score=92.94 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=31.4
Q ss_pred EeCCCCEEc-ceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCC
Q 015296 348 GIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 393 (409)
Q Consensus 348 ~Ig~~~~I~-~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g 393 (409)
.|+.++.+. +++|++++.||.++.+..+..+++.+.++.+++|...
T Consensus 140 ~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~~v~~~ 186 (197)
T cd03360 140 HIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKD 186 (197)
T ss_pred EECCCCEEcCCcEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCC
Confidence 466666664 5667777777777777666677777777777776655
No 155
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=2.7e-09 Score=105.16 Aligned_cols=88 Identities=20% Similarity=0.292 Sum_probs=77.7
Q ss_pred ccCCCcccCCceEe-cceEEEEEECCCcEEcc-eEEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcc
Q 015296 269 IYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVP 346 (409)
Q Consensus 269 i~~~~~~~~p~~i~-~~~i~~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~ 346 (409)
+.....+.+.+++. ++.|+.++||.+|.||+ |+|.+|+|.++++||+||.|++|+|+.+
T Consensus 331 ~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~g------------------- 391 (433)
T KOG1462|consen 331 VGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMG------------------- 391 (433)
T ss_pred cchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcceecceeccc-------------------
Confidence 34455677888888 88899999999999999 9999999999999999999999999987
Q ss_pred eEeCCCCEEcceEeCCCCEECCCcEEeCC
Q 015296 347 IGIGKNSHIKRAIIDKNARIGDNVKIVNS 375 (409)
Q Consensus 347 v~Ig~~~~I~~~ii~~n~~IG~~~~i~~~ 375 (409)
..||+++.+++|+|+.+=+|.+..+-.+.
T Consensus 392 A~Ig~gs~L~nC~Ig~~yvVeak~~~~~e 420 (433)
T KOG1462|consen 392 AQIGSGSKLKNCIIGPGYVVEAKGKHGGE 420 (433)
T ss_pred ceecCCCeeeeeEecCCcEEccccccccc
Confidence 47999999999999999999977665444
No 156
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.90 E-value=6.2e-09 Score=87.75 Aligned_cols=95 Identities=17% Similarity=0.247 Sum_probs=56.3
Q ss_pred CCCcEEcc-eEEe-ceEECCCCEECCCCEEe-ceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEe--------
Q 015296 292 GEGCVIKN-CKIH-HSVVGLRSCISEGAIIE-DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAII-------- 360 (409)
Q Consensus 292 g~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii-------- 360 (409)
+++|.|+. +.|+ +++||++|.|++++.|. +++|.+++ .|++++.+.++.+
T Consensus 2 g~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~-------------------~I~~~~~i~~~~~~~~~~~~~ 62 (119)
T cd03358 2 GDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDV-------------------FIGPNVVFTNDLYPRSKIYRK 62 (119)
T ss_pred CCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCc-------------------EEcCCeEEecCCCCccccccc
Confidence 44444444 4444 55666666666666663 33333331 3444444443222
Q ss_pred --CCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCcc
Q 015296 361 --DKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 408 (409)
Q Consensus 361 --~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtv 408 (409)
-.++.||++|+|..++.+.+...+++++.|+.+ .++.++ +|++++
T Consensus 63 ~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i~~~-~~v~~~--i~~~~~ 109 (119)
T cd03358 63 WELKGTTVKRGASIGANATILPGVTIGEYALVGAG-AVVTKD--VPPYAL 109 (119)
T ss_pred cccCCcEECCCcEECcCCEEeCCcEECCCCEEccC-CEEeCc--CCCCeE
Confidence 246788888888888888888888888888888 445443 666654
No 157
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.86 E-value=1.6e-08 Score=79.66 Aligned_cols=73 Identities=16% Similarity=0.375 Sum_probs=59.9
Q ss_pred CCceEe-cceE-EEEEECCCcEEcc-eEEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCC
Q 015296 277 PPSKML-DADV-TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNS 353 (409)
Q Consensus 277 ~p~~i~-~~~i-~~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~ 353 (409)
|++.+. ++.+ .+++|+++|.|++ |.|++++|+.++.|++++.|.+++++.+ +.|++++
T Consensus 4 ~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~-------------------~~v~~~~ 64 (80)
T cd05824 4 PSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN-------------------STVGRWT 64 (80)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC-------------------CEECCCc
Confidence 334443 4555 3589999999998 9999999999999999999999999887 4699999
Q ss_pred EEcc-eEeCCCCEECC
Q 015296 354 HIKR-AIIDKNARIGD 368 (409)
Q Consensus 354 ~I~~-~ii~~n~~IG~ 368 (409)
.+.. ++|+++++||+
T Consensus 65 ~~~~~~~ig~~~~i~~ 80 (80)
T cd05824 65 RLENVTVLGDDVTIKD 80 (80)
T ss_pred EEecCEEECCceEECC
Confidence 9975 77787777764
No 158
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.85 E-value=1.2e-08 Score=93.27 Aligned_cols=60 Identities=22% Similarity=0.323 Sum_probs=40.3
Q ss_pred eCCCCEEc-ceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCccC
Q 015296 349 IGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 409 (409)
Q Consensus 349 Ig~~~~I~-~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtvi 409 (409)
|+.++.|. +++|++++.||.++.|.....+++.++++.++.+..+ +.|++++.|+++++|
T Consensus 126 i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~-~~i~~~~~i~~~~~v 186 (201)
T TIGR03570 126 INTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQG-VTIGAGAIVGAGAVV 186 (201)
T ss_pred ECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCC-CEECCCCEECCCCEE
Confidence 44555553 4566666666666666666666666777777777777 678888888877764
No 159
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=98.84 E-value=3.5e-08 Score=89.29 Aligned_cols=53 Identities=19% Similarity=0.351 Sum_probs=47.3
Q ss_pred eEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhh
Q 015296 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSAS 149 (409)
Q Consensus 90 m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~ 149 (409)
|.+||||||.|+||+. ||+|+|++| +|||+|+++.+... +++|+|++++..+.
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g-~~ll~~~i~~l~~~-~~~iivv~~~~~~~ 53 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGG-KPLLEHVLERLKPL-VDEVVISANRDQER 53 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECC-EEHHHHHHHHHHhh-cCEEEEECCCChHH
Confidence 4689999999999983 999999998 59999999999988 89999999987543
No 160
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=98.79 E-value=3.7e-08 Score=88.42 Aligned_cols=99 Identities=16% Similarity=0.278 Sum_probs=57.6
Q ss_pred ECCCcEEcc-eEEe-ceEECCCCEECCCCEEeceE---EeCCcccccccchhhhccCCCcceEeCCCCEEc-----ceEe
Q 015296 291 IGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTL---LMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-----RAII 360 (409)
Q Consensus 291 Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~s~---i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~-----~~ii 360 (409)
|.+.++|.+ ++|. ++.||+++.|..+++|+... ..+. + ..|.+|+.|+ -++|
T Consensus 14 i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~---------------~---tNIQDg~ViH~~~~~p~~I 75 (176)
T COG0663 14 IDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGA---------------R---TNIQDGVVIHADPGYPVTI 75 (176)
T ss_pred CCCceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECC---------------C---ceecCCeEEecCCCCCeEE
Confidence 344455555 4443 78888888888888876432 1111 1 1233333333 1555
Q ss_pred CCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCccC
Q 015296 361 DKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 409 (409)
Q Consensus 361 ~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtvi 409 (409)
|+++.||.++.|.+ +.+++.+-+|-|++|.+| ..|++++.|++|++|
T Consensus 76 G~~vtIGH~aivHG-c~Ig~~~lIGmgA~vldg-a~IG~~~iVgAgalV 122 (176)
T COG0663 76 GDDVTIGHGAVVHG-CTIGDNVLIGMGATVLDG-AVIGDGSIVGAGALV 122 (176)
T ss_pred CCCcEEcCccEEEE-eEECCCcEEecCceEeCC-cEECCCcEEccCCcc
Confidence 66666666666654 555666666666666666 567777777777654
No 161
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.76 E-value=1.3e-08 Score=91.84 Aligned_cols=58 Identities=21% Similarity=0.358 Sum_probs=50.8
Q ss_pred eEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHH
Q 015296 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRH 153 (409)
Q Consensus 90 m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~ 153 (409)
+.+||||||.|+||++ ||+|+|++| +|||+|+++.+.+.++++|+|++++....+.++
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g-~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~ 58 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDG-KPLLRHALDAALAAGLSRVIVVLGAEADAVRAA 58 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCC-eeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHH
Confidence 4689999999999985 899999998 599999999999999999999999876554443
No 162
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=98.76 E-value=7.4e-09 Score=91.70 Aligned_cols=48 Identities=25% Similarity=0.409 Sum_probs=45.4
Q ss_pred EEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEccc
Q 015296 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF 145 (409)
Q Consensus 92 aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~ 145 (409)
+||||||.|+||+ .||+|+|++| +|||+|+++.+.+.++++|+|++++
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g-~~li~~~l~~l~~~~~~~Ivvv~~~ 48 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGG-KPLIERVLEALREAGVDDIVVVTGE 48 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETT-EEHHHHHHHHHHHHTESEEEEEEST
T ss_pred CEEECCcCcccCC-----CCccceeECC-ccHHHHHHHHhhccCCceEEEecCh
Confidence 6999999999997 3999999997 5999999999999999999999998
No 163
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.73 E-value=6.8e-08 Score=79.88 Aligned_cols=66 Identities=17% Similarity=0.306 Sum_probs=47.3
Q ss_pred EEEECCCcEEcc-eEEe-ceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCE
Q 015296 288 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNAR 365 (409)
Q Consensus 288 ~~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~ 365 (409)
+++|+++|.|++ |.|+ +++||++|.|+. .|.++++++. +.|+++++|.+++|+++++
T Consensus 29 ~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~-------------------~~i~~~~~lg~siIg~~v~ 87 (101)
T cd05635 29 PVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGY-------------------SNKQHDGFLGHSYLGSWCN 87 (101)
T ss_pred CCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCC-------------------CEecCcCEEeeeEECCCCE
Confidence 356777777776 6666 677777777754 5677777765 3577788888888888888
Q ss_pred ECCCcEEeC
Q 015296 366 IGDNVKIVN 374 (409)
Q Consensus 366 IG~~~~i~~ 374 (409)
||+++.+.|
T Consensus 88 ig~~~~~~~ 96 (101)
T cd05635 88 LGAGTNNSD 96 (101)
T ss_pred ECCCceecc
Confidence 888876643
No 164
>PLN02694 serine O-acetyltransferase
Probab=98.70 E-value=7e-08 Score=93.53 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=27.3
Q ss_pred EEECCCcEEcc-eEEe---ceEECCCCEECCCCEEeceEEeCC
Q 015296 289 SVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDTLLMGA 327 (409)
Q Consensus 289 ~~Ig~g~~I~~-~~I~---~svIg~~~~Ig~~~~I~~s~i~~~ 327 (409)
+-|++++.||. +.|. +++||++|.||++|.|..++.+++
T Consensus 161 vdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg 203 (294)
T PLN02694 161 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGG 203 (294)
T ss_pred EEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCC
Confidence 34555555555 5454 588888888888888887777665
No 165
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.70 E-value=8.9e-08 Score=83.72 Aligned_cols=9 Identities=22% Similarity=0.589 Sum_probs=3.4
Q ss_pred ECCCcEEcc
Q 015296 291 IGEGCVIKN 299 (409)
Q Consensus 291 Ig~g~~I~~ 299 (409)
||+|++|..
T Consensus 16 IG~GtvI~~ 24 (147)
T cd04649 16 LAEGTTVMH 24 (147)
T ss_pred ECCCcEECC
Confidence 333333333
No 166
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=98.68 E-value=2.1e-07 Score=86.16 Aligned_cols=51 Identities=20% Similarity=0.444 Sum_probs=44.5
Q ss_pred CceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEccc
Q 015296 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF 145 (409)
Q Consensus 88 ~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~ 145 (409)
+++.+||||||.|+||+ .+|+++|++| +|||+|+++.+... +++|+|++++
T Consensus 6 ~~~~~vILAgG~s~Rmg-----~~K~ll~~~g-~~ll~~~i~~l~~~-~~~ivvv~~~ 56 (200)
T PRK02726 6 NNLVALILAGGKSSRMG-----QDKALLPWQG-VPLLQRVARIAAAC-ADEVYIITPW 56 (200)
T ss_pred CCceEEEEcCCCcccCC-----CCceeeEECC-EeHHHHHHHHHHhh-CCEEEEECCC
Confidence 46789999999999997 3799999997 59999999999764 6899998864
No 167
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=98.66 E-value=5.9e-07 Score=84.82 Aligned_cols=57 Identities=28% Similarity=0.296 Sum_probs=48.6
Q ss_pred EEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCC-CceEEEEcccCh--hhHHHHHH
Q 015296 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNS--ASLNRHLS 155 (409)
Q Consensus 92 aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~G-i~~I~Vv~~~~~--~~i~~~l~ 155 (409)
|||||+|.++||. +|+|+|++| +|||+|+++.+..++ +++|+|+++... +.+.+++.
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~G-kpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~ 61 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGG-KPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAK 61 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCC-ccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHH
Confidence 7999999999994 499999998 599999999999987 899999999765 45555543
No 168
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.66 E-value=1.3e-07 Score=82.63 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=12.1
Q ss_pred eCCCCEEcceEeCCCCEECCCcEEeCCCc
Q 015296 349 IGKNSHIKRAIIDKNARIGDNVKIVNSDS 377 (409)
Q Consensus 349 Ig~~~~I~~~ii~~n~~IG~~~~i~~~~~ 377 (409)
||.++.| +..|++|+.||+++.+..++.
T Consensus 82 IG~ga~I-gv~IG~~~vIGaGsvV~k~t~ 109 (147)
T cd04649 82 LGANSGI-GISLGDNCIVEAGLYVTAGTK 109 (147)
T ss_pred ECCCCEE-eEEECCCCEECCCCEEeCCeE
Confidence 3333333 344444444444444444443
No 169
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.66 E-value=1.2e-07 Score=78.39 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=28.0
Q ss_pred EEECCCcEEcc-eEEe---ceEECCCCEECCCCEEece
Q 015296 289 SVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDT 322 (409)
Q Consensus 289 ~~Ig~g~~I~~-~~I~---~svIg~~~~Ig~~~~I~~s 322 (409)
+.||++|+|++ +.|. ++.||++|.|+++|.|.++
T Consensus 2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~ 39 (109)
T cd04647 2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDH 39 (109)
T ss_pred eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECC
Confidence 46788888888 7776 4889999999999999876
No 170
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=98.66 E-value=7.3e-07 Score=83.08 Aligned_cols=48 Identities=29% Similarity=0.439 Sum_probs=42.6
Q ss_pred eEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCC-CceEEEEcc
Q 015296 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQ 144 (409)
Q Consensus 90 m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~G-i~~I~Vv~~ 144 (409)
+.+||||+|.|+||. .|+|+|++| +|||+|+++.+.+++ +++|+|.+.
T Consensus 2 ~~~iIlA~G~s~R~~------~K~l~~l~G-kpll~~~l~~l~~~~~~~~IvV~~~ 50 (223)
T cd02513 2 ILAIIPARGGSKGIP------GKNIRPLGG-KPLIAWTIEAALESKLFDRVVVSTD 50 (223)
T ss_pred eEEEEecCCCCCCCC------CcccchhCC-ccHHHHHHHHHHhCCCCCEEEEECC
Confidence 569999999999994 499999998 599999999999987 788888774
No 171
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=98.64 E-value=2.5e-07 Score=93.63 Aligned_cols=62 Identities=24% Similarity=0.342 Sum_probs=50.6
Q ss_pred ccCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHH
Q 015296 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRH 153 (409)
Q Consensus 86 ~~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~ 153 (409)
.|+++.+||||||.|+||+ ..||+|+|++| +|||+|+++.+.. .+++|+|++....+.+.++
T Consensus 2 ~~~~i~~VILAgG~s~Rmg----g~~K~ll~i~G-kpll~~~i~~l~~-~~~~iivvv~~~~~~~~~~ 63 (366)
T PRK14489 2 QISQIAGVILAGGLSRRMN----GRDKALILLGG-KPLIERVVDRLRP-QFARIHLNINRDPARYQDL 63 (366)
T ss_pred CCCCceEEEEcCCcccCCC----CCCCceeEECC-eeHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhh
Confidence 3567899999999999995 36899999997 5999999999985 4899999776555444444
No 172
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.63 E-value=1.4e-07 Score=89.50 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=24.6
Q ss_pred CCCcccCCceEecceEEEEEECCCcEEcc-eEEe-ceEECCCCEECCCCEEece
Q 015296 271 TQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDT 322 (409)
Q Consensus 271 ~~~~~~~p~~i~~~~i~~~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~s 322 (409)
+..|+.|++.+- ..++|++|++|-. +.|. ++.++.+|.|..++.++.|
T Consensus 107 ~g~RI~p~a~VR----~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~ 156 (271)
T COG2171 107 EGVRIVPGAIVR----LGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSC 156 (271)
T ss_pred CceeecCccEEe----eccEECCCcEEcccceEEECcccCcceEEeeeeeeecc
Confidence 345566665543 1245555555555 5554 5555555555555554444
No 173
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.62 E-value=1.2e-07 Score=96.18 Aligned_cols=69 Identities=26% Similarity=0.326 Sum_probs=60.8
Q ss_pred eEEEEEECCCcEEcc-eEEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcc-----e
Q 015296 285 DVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR-----A 358 (409)
Q Consensus 285 ~i~~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~-----~ 358 (409)
.+.+++||++|.|++ |.|++|+|+++|+|+++|.|.+++++++ +.||+++++.+ .
T Consensus 305 ~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~-------------------~~i~~~~~i~~~~~~~~ 365 (380)
T PRK05293 305 TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN-------------------AVIGDGVIIGGGKEVIT 365 (380)
T ss_pred eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC-------------------CEECCCCEEcCCCceeE
Confidence 456799999999999 9999999999999999999999999887 46899999976 7
Q ss_pred EeCCCCEECCCcEE
Q 015296 359 IIDKNARIGDNVKI 372 (409)
Q Consensus 359 ii~~n~~IG~~~~i 372 (409)
+||++++|+++.+|
T Consensus 366 ~ig~~~~~~~~~~~ 379 (380)
T PRK05293 366 VIGENEVIGVGTVI 379 (380)
T ss_pred EEeCCCCCCCCcEe
Confidence 78888888877665
No 174
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=98.60 E-value=3.4e-07 Score=86.33 Aligned_cols=64 Identities=23% Similarity=0.322 Sum_probs=54.3
Q ss_pred cCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhC-CCceEEEEccc-ChhhHHHHH
Q 015296 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQF-NSASLNRHL 154 (409)
Q Consensus 87 ~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~-Gi~~I~Vv~~~-~~~~i~~~l 154 (409)
++++.+||||||.|+||+. ..||++++++| +|||.|.|+.+..+ .+++|+|++.. ..+.+.++.
T Consensus 2 ~~~~~~vilAaG~G~R~~~---~~pKq~l~l~g-~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~ 67 (230)
T COG1211 2 RMMVSAVILAAGFGSRMGN---PVPKQYLELGG-RPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLP 67 (230)
T ss_pred CceEEEEEEcCccccccCC---CCCceEEEECC-EEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhh
Confidence 4567899999999999985 78999999998 59999999999988 57999999987 445555555
No 175
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.60 E-value=3.4e-07 Score=75.70 Aligned_cols=66 Identities=23% Similarity=0.233 Sum_probs=43.2
Q ss_pred EEEEEECCCcEEcc-eEEe-ceEECCCCEECCCCEEec-eEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCC
Q 015296 286 VTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED-TLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDK 362 (409)
Q Consensus 286 i~~~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~-s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~ 362 (409)
.++++|++++.|+. +.+. .++||++|.|+++|.|++ +.|+.+ +.||. .|++|+|.+
T Consensus 9 ~g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~-------------------~~Ig~--~i~~svi~~ 67 (101)
T cd05635 9 DGPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPT-------------------CKIGG--EVEDSIIEG 67 (101)
T ss_pred CCCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCC-------------------CEECC--EECccEEcC
Confidence 34567888888877 7776 688888888888888765 333332 23443 455666666
Q ss_pred CCEECCCcEE
Q 015296 363 NARIGDNVKI 372 (409)
Q Consensus 363 n~~IG~~~~i 372 (409)
++.|+.++.|
T Consensus 68 ~~~i~~~~~l 77 (101)
T cd05635 68 YSNKQHDGFL 77 (101)
T ss_pred CCEecCcCEE
Confidence 6666666655
No 176
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.58 E-value=3.6e-07 Score=81.78 Aligned_cols=40 Identities=28% Similarity=0.317 Sum_probs=17.3
Q ss_pred eCCCCEEc-ceEeCCCCEECCCcEEeCCCccCCceeecCCe
Q 015296 349 IGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGY 388 (409)
Q Consensus 349 Ig~~~~I~-~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~ 388 (409)
||++++|. +++|++++.||+++.|..++.+.+...+++..
T Consensus 92 Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~ 132 (161)
T cd03359 92 IGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYS 132 (161)
T ss_pred EcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCC
Confidence 44444442 44444444444444444444443333333333
No 177
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.57 E-value=2.1e-07 Score=96.21 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=12.6
Q ss_pred eEEeceEECCCCEECCCCEEeceEEeCC
Q 015296 300 CKIHHSVVGLRSCISEGAIIEDTLLMGA 327 (409)
Q Consensus 300 ~~I~~svIg~~~~Ig~~~~I~~s~i~~~ 327 (409)
+.+.+++||++|.| ++|.|++|+|+++
T Consensus 304 ~~~~~~~ig~~~~i-~~~~i~~svi~~~ 330 (429)
T PRK02862 304 ATITESIIAEGCII-KNCSIHHSVLGIR 330 (429)
T ss_pred cEEEeCEECCCCEE-CCcEEEEEEEeCC
Confidence 34444444555444 4444444444444
No 178
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.57 E-value=3.9e-07 Score=81.78 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=33.9
Q ss_pred eEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEEeCCCccCCceee
Q 015296 305 SVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARE 384 (409)
Q Consensus 305 svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~~~~~v~~~~~~ 384 (409)
++|+++|.||++|.|.+.+.++... .. .....++|+++|.||.+++|..+..+++++.+
T Consensus 82 ~~Ig~~~~IG~~~~I~~~v~ig~~~-------------------~~--~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~I 140 (162)
T TIGR01172 82 VVIGETAVIGDDVTIYHGVTLGGTG-------------------KE--KGKRHPTVGEGVMIGAGAKVLGNIEVGENAKI 140 (162)
T ss_pred EEECCCCEECCCCEEcCCCEECCCc-------------------cc--cCCcCCEECCCcEEcCCCEEECCcEECCCCEE
Confidence 5666667777777666555544310 11 11334566666666666666554444444443
Q ss_pred cCCeEE
Q 015296 385 TDGYFI 390 (409)
Q Consensus 385 ~~g~~i 390 (409)
+.+++|
T Consensus 141 ga~s~V 146 (162)
T TIGR01172 141 GANSVV 146 (162)
T ss_pred CCCCEE
Confidence 333333
No 179
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.56 E-value=2.8e-07 Score=71.05 Aligned_cols=71 Identities=34% Similarity=0.419 Sum_probs=46.7
Q ss_pred EEECCCcEEcc-eEEe-ceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEc-ceEeCCCCE
Q 015296 289 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNAR 365 (409)
Q Consensus 289 ~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~-~~ii~~n~~ 365 (409)
+.|+++|.|++ +.|. +++||++|.|+++|.|.+...+. ...++.||+++.+. ++++..+++
T Consensus 1 ~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~----------------~~~~~~ig~~~~v~~~~~i~~~~~ 64 (78)
T cd00208 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPN----------------EKNPTIIGDNVEIGANAVIHGGVK 64 (78)
T ss_pred CEECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCC----------------ccCCcEECCCcEECCCCEEeCCCE
Confidence 35778888887 7777 58999999999999888764321 01124566666664 466666666
Q ss_pred ECCCcEEeCC
Q 015296 366 IGDNVKIVNS 375 (409)
Q Consensus 366 IG~~~~i~~~ 375 (409)
||+++.|..+
T Consensus 65 ig~~~~i~~~ 74 (78)
T cd00208 65 IGDNAVIGAG 74 (78)
T ss_pred ECCCCEECcC
Confidence 6666665543
No 180
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.53 E-value=3.2e-07 Score=92.10 Aligned_cols=41 Identities=29% Similarity=0.526 Sum_probs=23.5
Q ss_pred EEECCCcEEcceEEe-ceEECCCCEECCCCEEeceEEeCCccc
Q 015296 289 SVIGEGCVIKNCKIH-HSVVGLRSCISEGAIIEDTLLMGADYY 330 (409)
Q Consensus 289 ~~Ig~g~~I~~~~I~-~svIg~~~~Ig~~~~I~~s~i~~~~~~ 330 (409)
+.||+||+|+++.|. +|+||++|+|+ +|.|++++|++++.+
T Consensus 272 ~~Ig~~~~I~~~~i~~~~~Ig~~~~i~-~~~i~~s~i~~~~~i 313 (353)
T TIGR01208 272 AVIGEDCIIENSYIGPYTSIGEGVVIR-DAEVEHSIVLDESVI 313 (353)
T ss_pred cEECCCCEEcCcEECCCCEECCCCEEe-eeEEEeeEEcCCCEE
Confidence 555666666554444 56666666665 556666666555544
No 181
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.51 E-value=4.1e-07 Score=91.88 Aligned_cols=52 Identities=19% Similarity=0.334 Sum_probs=34.3
Q ss_pred ccCCceEecceEEEEEECCCcEEcc-eEEeceEECCCCEECCCCEEeceEEeCC
Q 015296 275 YLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGA 327 (409)
Q Consensus 275 ~~~p~~i~~~~i~~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~~ 327 (409)
+.+.+.|. +.+.+|+|+++|.|++ |.|.+|+|+.+|.|++++.|++++++.+
T Consensus 292 Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~ 344 (369)
T TIGR02092 292 VANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKD 344 (369)
T ss_pred EcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCC
Confidence 44444443 3455677777777777 7777777777777777777777776554
No 182
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.50 E-value=4.8e-07 Score=88.06 Aligned_cols=44 Identities=16% Similarity=0.028 Sum_probs=22.3
Q ss_pred CCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHH
Q 015296 109 KRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHL 154 (409)
Q Consensus 109 ~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l 154 (409)
.+|+|++.-.+ .|++-+-+.+--.|=+.-+.+...+.+++...|
T Consensus 21 ~~~~p~~~~~~--~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~ 64 (341)
T TIGR03536 21 FFPTPLLNPSA--ELVAAVAEVLGYEGGNQAIELTPAQCAALAVAF 64 (341)
T ss_pred EccCccCChhH--HHHHHHHhhcccccCceeeecCHHHHHHHHHHH
Confidence 35777765542 355544444433333455555555555555444
No 183
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.50 E-value=1.2e-07 Score=81.48 Aligned_cols=107 Identities=14% Similarity=0.225 Sum_probs=68.1
Q ss_pred EEEEECCCcEEcceEEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCEE
Q 015296 287 TDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARI 366 (409)
Q Consensus 287 ~~~~Ig~g~~I~~~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~I 366 (409)
+.++|.+||.|++ .+-|+-+|..|+|+..+.|+.++-.-+.-...++ ..+++. |.|++.+++..+.|+.-+.+
T Consensus 38 GKtIv~~g~iIRG-DLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp---~hiGdh---VFieE~cVVnAAqIgsyVh~ 110 (184)
T KOG3121|consen 38 GKTIVEEGVIIRG-DLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFP---VHIGDH---VFIEEECVVNAAQIGSYVHL 110 (184)
T ss_pred CcEEEeeCcEEec-ccccceEcceEEeccccccCCchHHhcCCceeee---eeecce---EEEecceEeehhhheeeeEe
Confidence 4579999999998 5568899999999999999876321110000000 000000 34555666666667888888
Q ss_pred CCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCc
Q 015296 367 GDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGT 407 (409)
Q Consensus 367 G~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gt 407 (409)
|+|+.|++.+++.+.+++.++ +++.+.+++|+.+
T Consensus 111 GknaviGrrCVlkdCc~ild~-------tVlPpet~vppy~ 144 (184)
T KOG3121|consen 111 GKNAVIGRRCVLKDCCRILDD-------TVLPPETLVPPYS 144 (184)
T ss_pred ccceeEcCceEhhhheeccCC-------cccCcccccCCce
Confidence 888888888888888776555 4555555555544
No 184
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.50 E-value=8.3e-07 Score=86.42 Aligned_cols=15 Identities=20% Similarity=0.709 Sum_probs=6.5
Q ss_pred EEEcCC--HHHHHHHHH
Q 015296 236 WEDIGT--IEAFYNANL 250 (409)
Q Consensus 236 w~DIgt--~edy~~an~ 250 (409)
|.+-|- +++|.....
T Consensus 134 Wtn~gp~~~~~~~~~~~ 150 (341)
T TIGR03536 134 WTNQGAIDLDELAERQL 150 (341)
T ss_pred eecCCCcchHHHHHHHH
Confidence 555442 344443333
No 185
>PRK10502 putative acyl transferase; Provisional
Probab=98.48 E-value=5.7e-07 Score=82.23 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=25.9
Q ss_pred EEECCCcEEcc-eEEe---ceEECCCCEECCCCEEec
Q 015296 289 SVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIED 321 (409)
Q Consensus 289 ~~Ig~g~~I~~-~~I~---~svIg~~~~Ig~~~~I~~ 321 (409)
+.||++|.|.+ +.|. +..||++|.|+++|.|.+
T Consensus 52 a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~ 88 (182)
T PRK10502 52 AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYN 88 (182)
T ss_pred cccCCCcEEcCCEEEecCCeEEECCCeEECCCceecc
Confidence 46777888877 7775 588999999999998864
No 186
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.48 E-value=6.9e-07 Score=86.39 Aligned_cols=35 Identities=23% Similarity=0.444 Sum_probs=21.3
Q ss_pred EEECCCcEEcc-eEEeceEECCCCEECCCCEEeceEEeC
Q 015296 289 SVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMG 326 (409)
Q Consensus 289 ~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~ 326 (409)
+.||+|++|++ + +.+||.+|.||++|.|.+.+..+
T Consensus 148 a~IG~g~~I~h~~---givIG~~a~IGdnv~I~~~VtiG 183 (273)
T PRK11132 148 AKIGRGIMLDHAT---GIVIGETAVIENDVSILQSVTLG 183 (273)
T ss_pred ceECCCeEEcCCC---CeEECCCCEECCCCEEcCCcEEe
Confidence 34555555554 2 45777777777777776554444
No 187
>PRK10502 putative acyl transferase; Provisional
Probab=98.47 E-value=1e-06 Score=80.54 Aligned_cols=83 Identities=22% Similarity=0.298 Sum_probs=47.9
Q ss_pred EEEECCCcEEcc-eEEe---ceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEc-ceEeCC
Q 015296 288 DSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDK 362 (409)
Q Consensus 288 ~~~Ig~g~~I~~-~~I~---~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~-~~ii~~ 362 (409)
+..||++|.|++ |.|. .++||++|.|+++|.|... ++++. +. ...+ ...|+.||+++.|. +++|..
T Consensus 71 ~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~---~h~~~--~~-~~~~---~~~~i~Igd~~~Ig~~a~I~~ 141 (182)
T PRK10502 71 KLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTG---SHDYS--DP-HFDL---NTAPIVIGEGCWLAADVFVAP 141 (182)
T ss_pred eEEECCCeEECCCceecccCceEECCCcEECCCeEEECC---CCCCc--CC-Cccc---ccCCEEEcCCcEEcCCCEEcC
Confidence 357778888877 7665 5678888888887776432 11110 00 0000 11235677777764 666666
Q ss_pred CCEECCCcEEeCCCccC
Q 015296 363 NARIGDNVKIVNSDSVQ 379 (409)
Q Consensus 363 n~~IG~~~~i~~~~~v~ 379 (409)
+++||+++.|..++.+.
T Consensus 142 Gv~Ig~~~vIga~svV~ 158 (182)
T PRK10502 142 GVTIGSGAVVGARSSVF 158 (182)
T ss_pred CCEECCCCEECCCCEEe
Confidence 66666666666555443
No 188
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.47 E-value=7.4e-07 Score=81.60 Aligned_cols=100 Identities=22% Similarity=0.271 Sum_probs=47.8
Q ss_pred CCcccCCceEe-cceEEEEEECCCcEEcc-eEEe-c--eEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcc
Q 015296 272 QPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIH-H--SVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVP 346 (409)
Q Consensus 272 ~~~~~~p~~i~-~~~i~~~~Ig~g~~I~~-~~I~-~--svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~ 346 (409)
++.+.||.... + .++.||++++|+. |+|. . ..||++|.|+++|.|... .+-....++..-. .-.-|
T Consensus 59 ~~~i~~~~~~~~g---~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~-----~h~~~~~~~~~~~-~~~~~ 129 (183)
T PRK10092 59 EAYIEPTFRCDYG---YNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTA-----THPLDPVARNSGA-ELGKP 129 (183)
T ss_pred CEEEeCCEEEeec---CCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcC-----CCCCChHHccccc-eecCC
Confidence 34456665432 1 2356666666666 5554 2 367777777777766422 1110111110000 00113
Q ss_pred eEeCCCCEEc-ceEeCCCCEECCCcEEeCCCccCC
Q 015296 347 IGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQE 380 (409)
Q Consensus 347 v~Ig~~~~I~-~~ii~~n~~IG~~~~i~~~~~v~~ 380 (409)
+.||+++.|. +|+|..+++||++|+|..++.+..
T Consensus 130 v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~ 164 (183)
T PRK10092 130 VTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTK 164 (183)
T ss_pred eEECCCcEECCCCEECCCCEECCCCEECCCCEEcc
Confidence 4566666663 555555555555555555544433
No 189
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.47 E-value=8.6e-07 Score=79.99 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=25.4
Q ss_pred EEEECCCcEEcc-eEEe---ceEECCCCEECCCCEEec
Q 015296 288 DSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIED 321 (409)
Q Consensus 288 ~~~Ig~g~~I~~-~~I~---~svIg~~~~Ig~~~~I~~ 321 (409)
++.||++|+|+. |.|. +.+||++|.|+++|.|..
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~ 99 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYT 99 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEe
Confidence 346788888877 6664 568888888888888754
No 190
>PLN02357 serine acetyltransferase
Probab=98.47 E-value=6.6e-07 Score=89.12 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=22.8
Q ss_pred EECCCcEEcc-eEEe---ceEECCCCEECCCCEEeceEEeCC
Q 015296 290 VIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDTLLMGA 327 (409)
Q Consensus 290 ~Ig~g~~I~~-~~I~---~svIg~~~~Ig~~~~I~~s~i~~~ 327 (409)
.|++++.||. +.|. +++||++++||++|.|...+.+++
T Consensus 228 dI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg 269 (360)
T PLN02357 228 DIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGG 269 (360)
T ss_pred eeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecC
Confidence 3444444444 4443 467777777777777766666554
No 191
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.46 E-value=8.7e-07 Score=82.39 Aligned_cols=101 Identities=24% Similarity=0.239 Sum_probs=57.2
Q ss_pred cCCCcccCCceEe-cceEEEEEECCCcEEcc-eEEe---ceEECCCCEECCCCEEeceEEeCCcccccccch-hhhccCC
Q 015296 270 YTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDTLLMGADYYETDADR-RFLAAKG 343 (409)
Q Consensus 270 ~~~~~~~~p~~i~-~~~i~~~~Ig~g~~I~~-~~I~---~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~-~~~~~~g 343 (409)
..++.+.||..+. + .++.||++++|+. |+|. ++.||++|.|+++|.|... ++.. ....+ .... .
T Consensus 59 g~~~~I~~~~~~~~g---~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~---~h~~--~~~~r~~g~~--~ 128 (203)
T PRK09527 59 GENAWVEPPVYFSYG---SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVT---GHPV--HHELRKNGEM--Y 128 (203)
T ss_pred CCCcEEcCCEEEeeC---CCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeC---CCCC--Chhhcccccc--c
Confidence 3455677777753 2 3457888888887 7773 4788888888888887642 1100 00000 0000 0
Q ss_pred CcceEeCCCCEEc-ceEeCCCCEECCCcEEeCCCccCC
Q 015296 344 SVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQE 380 (409)
Q Consensus 344 ~~~v~Ig~~~~I~-~~ii~~n~~IG~~~~i~~~~~v~~ 380 (409)
.-||.||+++.|. +++|..+++||++++|..++.+..
T Consensus 129 ~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~k 166 (203)
T PRK09527 129 SFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTK 166 (203)
T ss_pred cCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence 1235666666664 566666666666666655555443
No 192
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.46 E-value=8.2e-07 Score=91.93 Aligned_cols=117 Identities=18% Similarity=0.132 Sum_probs=65.0
Q ss_pred cccCCceEecceEEEEEECCCcEEcc-eEEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCC
Q 015296 274 RYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKN 352 (409)
Q Consensus 274 ~~~~p~~i~~~~i~~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~ 352 (409)
.+.+++.|.++.|.+++|+++|.|++ |.|.+++|+.......+.. .+.+.+... ....+++++ .|+ +
T Consensus 317 ~I~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~--~~~~~~~~~------~~~~Ig~~~---~i~-~ 384 (436)
T PLN02241 317 IISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEE--IASLLAEGK------VPIGIGENT---KIR-N 384 (436)
T ss_pred EEcCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccc--cccccccCC------cceEECCCC---EEc-c
Confidence 45555655556667777777777777 7776655533222222221 112211100 001234443 344 5
Q ss_pred CEEc-ceEeCCCCEECCCcEEeCCCccCCceeecCC-eEEeCCeEEEcCCcEe
Q 015296 353 SHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDG-YFIKSGIVTIIKDALI 403 (409)
Q Consensus 353 ~~I~-~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g-~~i~~g~v~i~~~~~I 403 (409)
+.|. ++.|++++.|+...-+.....+++.+++++| ++|+.+ ..|..+++|
T Consensus 385 ~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~ 436 (436)
T PLN02241 385 AIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGIVVILKN-AVIPDGTVI 436 (436)
T ss_pred eEecCCCEECCCcEEecccccCCccccccccEEeCCEEEEcCC-cEeCCCCCC
Confidence 6664 7777777777766666666666667777777 467766 666666653
No 193
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=5.7e-07 Score=90.78 Aligned_cols=87 Identities=30% Similarity=0.375 Sum_probs=65.9
Q ss_pred CCceEe-cceEEE-EEECCCcEEcc-eEEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCC
Q 015296 277 PPSKML-DADVTD-SVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNS 353 (409)
Q Consensus 277 ~p~~i~-~~~i~~-~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~ 353 (409)
+.+.+. ++.|.. ++||+||.|++ +.|.+|+|+++|.|++++.|.+++|+.++ .||++.
T Consensus 266 ~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~-------------------~ig~~~ 326 (358)
T COG1208 266 PGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENC-------------------KIGASL 326 (358)
T ss_pred CCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCc-------------------EECCce
Confidence 333443 344444 89999999999 99999999999999999999999999984 577721
Q ss_pred EEcceEeCCCCEECCCcEEeCCCccCCceeecCCe
Q 015296 354 HIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGY 388 (409)
Q Consensus 354 ~I~~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~ 388 (409)
.+++ +.+|.++.+..+..++....++.+.
T Consensus 327 -----~i~d-~~~g~~~~i~~g~~~~~~~~~~~~~ 355 (358)
T COG1208 327 -----IIGD-VVIGINSEILPGVVVGPGSVVESGE 355 (358)
T ss_pred -----eecc-eEecCceEEcCceEeCCCccccCcc
Confidence 1777 8888888887776666665554443
No 194
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.45 E-value=1.5e-06 Score=84.25 Aligned_cols=14 Identities=21% Similarity=0.679 Sum_probs=5.8
Q ss_pred EEEcCC--HHHHHHHH
Q 015296 236 WEDIGT--IEAFYNAN 249 (409)
Q Consensus 236 w~DIgt--~edy~~an 249 (409)
|..-|- ++.|....
T Consensus 110 Wt~~Gp~~l~~f~~~~ 125 (319)
T TIGR03535 110 WTNHGPCAVDDFELTR 125 (319)
T ss_pred hhcCCCcchhhhhhhh
Confidence 444443 44443333
No 195
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=98.44 E-value=3e-07 Score=84.09 Aligned_cols=52 Identities=31% Similarity=0.402 Sum_probs=46.8
Q ss_pred EEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChh
Q 015296 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA 148 (409)
Q Consensus 91 ~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~ 148 (409)
.+||||||.|+||+. +|.|++++| +|||+|+++.+.+.++++++|++++..+
T Consensus 2 ~~vILAgG~s~Rmg~-----~K~ll~~~g-~~ll~~~i~~~~~~~~~~i~vv~~~~~~ 53 (190)
T TIGR03202 2 VAIYLAAGQSRRMGE-----NKLALPLGE-TTLGSASLKTALSSRLSKVIVVIGEKYA 53 (190)
T ss_pred eEEEEcCCccccCCC-----CceeceeCC-ccHHHHHHHHHHhCCCCcEEEEeCCccc
Confidence 589999999999973 799999998 5999999999888999999999987653
No 196
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.42 E-value=2e-06 Score=79.26 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=26.0
Q ss_pred EEEECCCcEEcc-eEEe---ceEECCCCEECCCCEEece
Q 015296 288 DSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDT 322 (409)
Q Consensus 288 ~~~Ig~g~~I~~-~~I~---~svIg~~~~Ig~~~~I~~s 322 (409)
...||++|.|++ +.|. +++||++|.|++++.|.+.
T Consensus 65 ~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~ 103 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDH 103 (192)
T ss_pred eEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECC
Confidence 357888888877 7665 5788888888888877653
No 197
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.42 E-value=2e-06 Score=70.61 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=43.4
Q ss_pred EECCCcEEcc-eEEe---ceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCE---EcceEeCC
Q 015296 290 VIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSH---IKRAIIDK 362 (409)
Q Consensus 290 ~Ig~g~~I~~-~~I~---~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~---I~~~ii~~ 362 (409)
.|++++.|++ +.|. +++|++++.|+++|.|.+.+ .|++++. +..++|++
T Consensus 4 ~i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i~~~~------------------------~i~~~~~~~~~~~~~Ig~ 59 (101)
T cd03354 4 DIHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTIYQGV------------------------TLGGKGKGGGKRHPTIGD 59 (101)
T ss_pred EeCCCCEECCCEEECCCCeEEECCCCEECCCCEEcCCC------------------------EECCCccCCcCCCCEECC
Confidence 4566666666 5553 45677777777777664333 2444443 45677777
Q ss_pred CCEECCCcEEeCCCccCCceeecCC
Q 015296 363 NARIGDNVKIVNSDSVQEAARETDG 387 (409)
Q Consensus 363 n~~IG~~~~i~~~~~v~~~~~~~~g 387 (409)
++.|+.++.+.....+++.+.++.+
T Consensus 60 ~~~Ig~~~~i~~~~~Ig~~~~i~~~ 84 (101)
T cd03354 60 NVVIGAGAKILGNITIGDNVKIGAN 84 (101)
T ss_pred CcEEcCCCEEECcCEECCCCEECCC
Confidence 7777777777655444444333333
No 198
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.41 E-value=7.9e-07 Score=89.46 Aligned_cols=52 Identities=23% Similarity=0.266 Sum_probs=26.3
Q ss_pred ccCCceEecceEEEEEECCCcEEcc-eEEeceEECCCCEECCCCEEeceEEeC
Q 015296 275 YLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMG 326 (409)
Q Consensus 275 ~~~p~~i~~~~i~~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~ 326 (409)
+.+++.|.++.+.+++|+++|.|++ |.|.+|+|++++.|+++|.|+++++++
T Consensus 297 ig~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~ 349 (361)
T TIGR02091 297 VSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDK 349 (361)
T ss_pred ECCCCEECCCEEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECC
Confidence 3334444333444555555555555 555555555555555555555555443
No 199
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=98.41 E-value=5.3e-07 Score=84.92 Aligned_cols=63 Identities=27% Similarity=0.401 Sum_probs=49.6
Q ss_pred eEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhC-CCceEEEEcccCh-hhHHHHHHH
Q 015296 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSR 156 (409)
Q Consensus 90 m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~-Gi~~I~Vv~~~~~-~~i~~~l~~ 156 (409)
+.+||||||.|+||+ ...||++++++| +|+|.|.|+.+.+. .+++|+|++.... +.+++.+.+
T Consensus 1 V~aIilAaG~G~R~g---~~~pKQf~~l~G-kpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~ 65 (221)
T PF01128_consen 1 VAAIILAAGSGSRMG---SGIPKQFLELGG-KPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK 65 (221)
T ss_dssp EEEEEEESS-STCCT---SSS-GGGSEETT-EEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH
T ss_pred CEEEEeCCccchhcC---cCCCCeeeEECC-eEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC
Confidence 468999999999997 368999999998 59999999999986 6899999988654 444444443
No 200
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=98.40 E-value=3.5e-06 Score=85.44 Aligned_cols=53 Identities=11% Similarity=0.209 Sum_probs=44.9
Q ss_pred cCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccC
Q 015296 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN 146 (409)
Q Consensus 87 ~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~ 146 (409)
+..+.+||||||+|+||+ .+|+|+|++| +|||+|+++.+... .++|+|+++..
T Consensus 172 ~~~i~~iILAGG~SsRmG-----~~K~ll~~~G-k~ll~~~l~~l~~~-~~~vvV~~~~~ 224 (369)
T PRK14490 172 EVPLSGLVLAGGRSSRMG-----SDKALLSYHE-SNQLVHTAALLRPH-CQEVFISCRAE 224 (369)
T ss_pred cCCceEEEEcCCccccCC-----CCcEEEEECC-ccHHHHHHHHHHhh-CCEEEEEeCCc
Confidence 355789999999999997 4899999998 59999999999864 77888877643
No 201
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.39 E-value=3.4e-06 Score=76.12 Aligned_cols=13 Identities=15% Similarity=0.082 Sum_probs=5.9
Q ss_pred ECCCcEEcc-eEEe
Q 015296 291 IGEGCVIKN-CKIH 303 (409)
Q Consensus 291 Ig~g~~I~~-~~I~ 303 (409)
.+.++.|++ +.|.
T Consensus 59 ~~~~i~IG~~v~I~ 72 (169)
T cd03357 59 YGYNIHIGDNFYAN 72 (169)
T ss_pred eCCcCEECCCceEc
Confidence 344455554 4443
No 202
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=98.38 E-value=5.4e-07 Score=81.83 Aligned_cols=52 Identities=29% Similarity=0.424 Sum_probs=45.1
Q ss_pred eEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccCh
Q 015296 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS 147 (409)
Q Consensus 90 m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~ 147 (409)
+.+||||||.||||+ .+||+|+|++| +|||+|+++.+.. .+++|+|++....
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g-~pll~~~l~~l~~-~~~~ivv~~~~~~ 52 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGG-KPLIEHVLARLRP-QVSDLAISANRNP 52 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECC-EEHHHHHHHHHHh-hCCEEEEEcCCCH
Confidence 468999999999997 35999999998 5999999999986 5899999987554
No 203
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.38 E-value=1.7e-06 Score=86.71 Aligned_cols=52 Identities=23% Similarity=0.244 Sum_probs=45.7
Q ss_pred ccCCceEecceEEEEEECCCcEEcc-eEEeceEECCCCEECCCCEEeceEEeCC
Q 015296 275 YLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGA 327 (409)
Q Consensus 275 ~~~p~~i~~~~i~~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~~ 327 (409)
+...|.|.+ +|.+|+|+.|+.|+. |.|++|+|.++|.||+||.|++++|..+
T Consensus 299 v~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~ 351 (393)
T COG0448 299 VAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKN 351 (393)
T ss_pred eeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCC
Confidence 444555555 889999999999999 9999999999999999999999998665
No 204
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.33 E-value=2.4e-06 Score=87.72 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=54.9
Q ss_pred CcccCCceEecceEEEEEECCCcEEcc-eEEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCC
Q 015296 273 PRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGK 351 (409)
Q Consensus 273 ~~~~~p~~i~~~~i~~~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~ 351 (409)
..+.+++.|.+++|.+|+||++|.|++ |.|++|+|+++|+|+++|.|.+++++.+ +.||+
T Consensus 316 ~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~-------------------~~i~~ 376 (407)
T PRK00844 316 SLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKN-------------------VVVPP 376 (407)
T ss_pred CEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCC-------------------CEECC
Confidence 445555666667888999999999998 9999999999999999999999998776 35787
Q ss_pred CCEEcc
Q 015296 352 NSHIKR 357 (409)
Q Consensus 352 ~~~I~~ 357 (409)
++++.+
T Consensus 377 ~~~i~~ 382 (407)
T PRK00844 377 GATIGV 382 (407)
T ss_pred CCEECC
Confidence 777654
No 205
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.32 E-value=1.8e-06 Score=89.22 Aligned_cols=72 Identities=14% Similarity=0.298 Sum_probs=50.9
Q ss_pred EEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEEeCCCccCC
Q 015296 301 KIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQE 380 (409)
Q Consensus 301 ~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~~~~~v~~ 380 (409)
.+.+|+||.+|+| ++|.|++|+|+.+ +.||+++.|++|+|+++|+||++|.|. ++.+++
T Consensus 324 ~~~~s~i~~~~~i-~~~~i~~svi~~~-------------------~~I~~~~~i~~svi~~~~~I~~~~~i~-~~ii~~ 382 (425)
T PRK00725 324 MAINSLVSGGCII-SGAVVRRSVLFSR-------------------VRVNSFSNVEDSVLLPDVNVGRSCRLR-RCVIDR 382 (425)
T ss_pred eEEeCEEcCCcEE-cCccccCCEECCC-------------------CEECCCCEEeeeEEcCCCEECCCCEEe-eEEECC
Confidence 4557888888888 6788888887776 357888888888888888888888774 455555
Q ss_pred ceeecCCeEEeCC
Q 015296 381 AARETDGYFIKSG 393 (409)
Q Consensus 381 ~~~~~~g~~i~~g 393 (409)
+++++++++|+++
T Consensus 383 ~~~i~~~~~i~~~ 395 (425)
T PRK00725 383 GCVIPEGMVIGED 395 (425)
T ss_pred CCEECCCCEECCC
Confidence 5555555555444
No 206
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=98.31 E-value=1.2e-06 Score=84.96 Aligned_cols=62 Identities=19% Similarity=0.336 Sum_probs=53.3
Q ss_pred EEEEEcCCCCCCCCCCcCCCCCcceEeC---CCcchHHHHHHhhhh--------CCCceEEEEcccChhhHHHHHHH
Q 015296 91 LGIILGGGAGTRLYPLTKKRAKPAVPLG---ANYRLIDIPVSNCLN--------SNISKIYVLTQFNSASLNRHLSR 156 (409)
Q Consensus 91 ~aIILAaG~GtRl~Plt~~~PK~LlPI~---g~~pLI~~~l~~l~~--------~Gi~~I~Vv~~~~~~~i~~~l~~ 156 (409)
.++|||||.||||+ ...||+|+||+ | +|+|++.++++.+ .+|..+++...+..+.+.+||.+
T Consensus 2 a~viLaGG~GtRLg---~~~PK~~~~i~~~~g-k~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~ 74 (266)
T cd04180 2 AVVLLAGGLGTRLG---KDGPKSSTDVGLPSG-QCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEK 74 (266)
T ss_pred EEEEECCCCccccC---CCCCceeeeecCCCC-CcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHH
Confidence 57999999999995 67899999999 6 6999999999986 35767777777888889999887
No 207
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.30 E-value=4.3e-06 Score=77.14 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=32.3
Q ss_pred cccCCceEe-cceEEEEEECCCcEEcc-eEEe-----ceEECCCCEECCCCEEe---ceEEeCCccc
Q 015296 274 RYLPPSKML-DADVTDSVIGEGCVIKN-CKIH-----HSVVGLRSCISEGAIIE---DTLLMGADYY 330 (409)
Q Consensus 274 ~~~~p~~i~-~~~i~~~~Ig~g~~I~~-~~I~-----~svIg~~~~Ig~~~~I~---~s~i~~~~~~ 330 (409)
.+.||-.+. .. +..+|+++.|+. |.+. ...||++|.|++++.|. +..|++++.+
T Consensus 31 ~i~~pf~~~~~~---~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~I 94 (192)
T PRK09677 31 IIRFPFYIRNDG---SINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLI 94 (192)
T ss_pred EEcCCEEEcCCC---eEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEE
Confidence 344555544 22 235666666666 5552 57888888888888885 3455555433
No 208
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.30 E-value=3.8e-06 Score=79.85 Aligned_cols=99 Identities=20% Similarity=0.250 Sum_probs=49.7
Q ss_pred CCccCCCcccCCceEec-ceE-EEEEECCCcEEcc-eEEe-ceEECCCCEECCCCEEeceEEeCCcccccccchhhhccC
Q 015296 267 APIYTQPRYLPPSKMLD-ADV-TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAK 342 (409)
Q Consensus 267 ~~i~~~~~~~~p~~i~~-~~i-~~~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~ 342 (409)
+.+..++.+-+.+.++. +-| -++.++++|.|+. +++. ..+||++|.||.|+.|.. ++-+.
T Consensus 115 a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~G-VLep~--------------- 178 (271)
T COG2171 115 AIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGG-VLEPL--------------- 178 (271)
T ss_pred cEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeE-EecCC---------------
Confidence 33344444444444442 332 2366677777776 6665 566666666666666655 22221
Q ss_pred CCcceEeCCCCEEc-ceEeCCCCEECCCcEEeCCCccCCc
Q 015296 343 GSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEA 381 (409)
Q Consensus 343 g~~~v~Ig~~~~I~-~~ii~~n~~IG~~~~i~~~~~v~~~ 381 (409)
+.-|+.||+||.|. |+.+..++.+|++|+|..+..+.++
T Consensus 179 ~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~ 218 (271)
T COG2171 179 QANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQD 218 (271)
T ss_pred CCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCC
Confidence 23345566555554 4444444444444444444333333
No 209
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.29 E-value=3.5e-06 Score=75.62 Aligned_cols=76 Identities=25% Similarity=0.373 Sum_probs=42.6
Q ss_pred EEECCCcEEcc---eEEe-ceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEc-ceEeCCC
Q 015296 289 SVIGEGCVIKN---CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKN 363 (409)
Q Consensus 289 ~~Ig~g~~I~~---~~I~-~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~-~~ii~~n 363 (409)
+.||++++|++ +.|. +++||++|.|+.++.|+........ +...++++ +.||.++.|. +++|+++
T Consensus 68 ~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~~-------~~~~Ig~~---v~Ig~~a~I~~~v~IG~~ 137 (162)
T TIGR01172 68 ARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGK-------RHPTVGEG---VMIGAGAKVLGNIEVGEN 137 (162)
T ss_pred CEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCccccCC-------cCCEECCC---cEEcCCCEEECCcEECCC
Confidence 45666666653 4555 6899999999999998865221110 00011111 2455555554 4556666
Q ss_pred CEECCCcEEeC
Q 015296 364 ARIGDNVKIVN 374 (409)
Q Consensus 364 ~~IG~~~~i~~ 374 (409)
+.||+++.+..
T Consensus 138 ~~Iga~s~V~~ 148 (162)
T TIGR01172 138 AKIGANSVVLK 148 (162)
T ss_pred CEECCCCEECC
Confidence 66666666543
No 210
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.27 E-value=1.1e-05 Score=67.19 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=24.6
Q ss_pred EEECCCcEEcc-eEEe---ceEECCCCEECCCCEEec
Q 015296 289 SVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIED 321 (409)
Q Consensus 289 ~~Ig~g~~I~~-~~I~---~svIg~~~~Ig~~~~I~~ 321 (409)
..||++|.|++ |.|. ...||++|.|++++.|.+
T Consensus 4 i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~ 40 (107)
T cd05825 4 LTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCT 40 (107)
T ss_pred EEECCCCEECCCCEEeeCCceEECCCCEECCCeEeec
Confidence 46788888877 7775 468888888888887753
No 211
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.25 E-value=1.6e-06 Score=75.19 Aligned_cols=49 Identities=27% Similarity=0.464 Sum_probs=37.5
Q ss_pred CcccCCceEe-cceE-EEEEECCCcEEcc-eEEe----ceEECCCCEECCCCEEec
Q 015296 273 PRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH----HSVVGLRSCISEGAIIED 321 (409)
Q Consensus 273 ~~~~~p~~i~-~~~i-~~~~Ig~g~~I~~-~~I~----~svIg~~~~Ig~~~~I~~ 321 (409)
..+.|.+.+- .+.+ +++.|++||+|.+ +++. .-+||+++.|.+.+.|.+
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n 64 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRN 64 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHh
Confidence 4455555554 5555 5699999999999 7664 579999999999998865
No 212
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.25 E-value=2.9e-06 Score=82.10 Aligned_cols=8 Identities=50% Similarity=0.684 Sum_probs=3.1
Q ss_pred EECCCCEE
Q 015296 312 CISEGAII 319 (409)
Q Consensus 312 ~Ig~~~~I 319 (409)
+||++|.|
T Consensus 163 vIG~~a~I 170 (273)
T PRK11132 163 VIGETAVI 170 (273)
T ss_pred EECCCCEE
Confidence 33333333
No 213
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.22 E-value=6.7e-06 Score=67.53 Aligned_cols=29 Identities=28% Similarity=0.254 Sum_probs=16.9
Q ss_pred EECCCcEEeCCCccCCceeecCCeEEeCC
Q 015296 365 RIGDNVKIVNSDSVQEAARETDGYFIKSG 393 (409)
Q Consensus 365 ~IG~~~~i~~~~~v~~~~~~~~g~~i~~g 393 (409)
.||++|.|..+..+.+.++++++++|+.+
T Consensus 56 ~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~ 84 (101)
T cd03354 56 TIGDNVVIGAGAKILGNITIGDNVKIGAN 84 (101)
T ss_pred EECCCcEEcCCCEEECcCEECCCCEECCC
Confidence 46666666655555555555555555555
No 214
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.21 E-value=7.5e-06 Score=62.96 Aligned_cols=16 Identities=25% Similarity=0.302 Sum_probs=9.1
Q ss_pred EECCCCEECCCCEEec
Q 015296 306 VVGLRSCISEGAIIED 321 (409)
Q Consensus 306 vIg~~~~Ig~~~~I~~ 321 (409)
.||+++.|++++.|++
T Consensus 2 ~ig~~~~i~~~~~i~~ 17 (78)
T cd00208 2 FIGEGVKIHPKAVIRG 17 (78)
T ss_pred EECCCeEECCCCEEeC
Confidence 4555566655555554
No 215
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.21 E-value=1e-05 Score=78.55 Aligned_cols=9 Identities=22% Similarity=0.409 Sum_probs=4.4
Q ss_pred CCceEEEEc
Q 015296 135 NISKIYVLT 143 (409)
Q Consensus 135 Gi~~I~Vv~ 143 (409)
+++.+.|.+
T Consensus 56 ~~~~~~v~~ 64 (319)
T TIGR03535 56 GVERVAVRT 64 (319)
T ss_pred CceeeEEEE
Confidence 445555444
No 216
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.21 E-value=5.7e-06 Score=76.93 Aligned_cols=97 Identities=20% Similarity=0.245 Sum_probs=55.4
Q ss_pred EECCCcEEcc-eEEe---ceEECCCCEECCCCEEece---EEeCCcccccccchhhhccCCCcceEeCCCCEEcc-----
Q 015296 290 VIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDT---LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR----- 357 (409)
Q Consensus 290 ~Ig~g~~I~~-~~I~---~svIg~~~~Ig~~~~I~~s---~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~----- 357 (409)
.+|++++|.. +.+. ++.||+++.|+.+|.|.+. .|+++ +.||.++.|..
T Consensus 57 ~ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~d~~~I~IGd~-------------------v~Ig~~v~I~~~~h~~ 117 (203)
T PRK09527 57 TVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDN-------------------VLIAPNVTLSVTGHPV 117 (203)
T ss_pred hcCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEecCCCEEECCC-------------------CEECCCCEEEeCCCCC
Confidence 4677777877 6552 7888888888888887442 33333 23444444431
Q ss_pred --------eEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCcc
Q 015296 358 --------AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 408 (409)
Q Consensus 358 --------~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtv 408 (409)
......++||++|+|..++.+..+++++++++|+.| .+|.++ ||++++
T Consensus 118 ~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgag-svV~kd--vp~~~v 173 (203)
T PRK09527 118 HHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAG-SVVTKD--IPPNVV 173 (203)
T ss_pred ChhhccccccccCCeEECCCcEECCCCEEcCCCEECCCCEECCC-CEEccc--CCCCcE
Confidence 011123455555555555555566666666667666 344443 455544
No 217
>PLN02694 serine O-acetyltransferase
Probab=98.20 E-value=4.3e-06 Score=81.24 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=25.9
Q ss_pred EEECCCcEEcc---eEEe-ceEECCCCEECCCCEEece
Q 015296 289 SVIGEGCVIKN---CKIH-HSVVGLRSCISEGAIIEDT 322 (409)
Q Consensus 289 ~~Ig~g~~I~~---~~I~-~svIg~~~~Ig~~~~I~~s 322 (409)
+.||+|++|++ ++|+ +++||++|+|..++.|+..
T Consensus 167 A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~ 204 (294)
T PLN02694 167 AKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGT 204 (294)
T ss_pred ceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCc
Confidence 45566666653 5555 8999999999999999865
No 218
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.20 E-value=1.1e-05 Score=73.93 Aligned_cols=45 Identities=27% Similarity=0.439 Sum_probs=27.0
Q ss_pred CCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCcc
Q 015296 361 DKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 408 (409)
Q Consensus 361 ~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtv 408 (409)
++.+.||++|+|..++.+...+.+|++++|+.| .+|.++ ||++++
T Consensus 127 ~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgag-svV~~d--i~~~~i 171 (183)
T PRK10092 127 GKPVTIGNNVWIGGRAVINPGVTIGDNVVVASG-AVVTKD--VPDNVV 171 (183)
T ss_pred cCCeEECCCcEECCCCEECCCCEECCCCEECCC-CEEccc--cCCCcE
Confidence 345566666666655555666667777777777 444444 455554
No 219
>PRK10191 putative acyl transferase; Provisional
Probab=98.17 E-value=1.3e-05 Score=70.77 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=15.5
Q ss_pred EeCCCCEEc-ceEeCCCCEECCCcEEeCCCccC
Q 015296 348 GIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQ 379 (409)
Q Consensus 348 ~Ig~~~~I~-~~ii~~n~~IG~~~~i~~~~~v~ 379 (409)
.||+++.|. ++.+..+++||++++|..++.+.
T Consensus 94 ~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~ 126 (146)
T PRK10191 94 HIGNGVELGANVIILGDITIGNNVTVGAGSVVL 126 (146)
T ss_pred EECCCcEEcCCCEEeCCCEECCCCEECCCCEEC
Confidence 455555553 44444555555555554444333
No 220
>PLN02739 serine acetyltransferase
Probab=98.17 E-value=6.5e-06 Score=81.59 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=16.4
Q ss_pred EECCCcEEcc-eEEeceEECCCCEECCCCEEeceEE
Q 015296 290 VIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLL 324 (409)
Q Consensus 290 ~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i 324 (409)
.||+|++|.+ + +++||.+|.||++|.|...+.
T Consensus 213 ~IG~Gv~IdHg~---GVVIG~~avIGdnv~I~~gVT 245 (355)
T PLN02739 213 RIGKGILLDHGT---GVVIGETAVIGDRVSILHGVT 245 (355)
T ss_pred cccCceEEecCC---ceEECCCCEECCCCEEcCCce
Confidence 4455555543 2 455555555555555544333
No 221
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.15 E-value=3.9e-06 Score=83.47 Aligned_cols=66 Identities=23% Similarity=0.364 Sum_probs=54.1
Q ss_pred CceEEEEEcCCCCCCCCCCcCCCCCcceEeCC--CcchHHHHHHhhhhCC-----------CceEEEEcc-cChhhHHHH
Q 015296 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA--NYRLIDIPVSNCLNSN-----------ISKIYVLTQ-FNSASLNRH 153 (409)
Q Consensus 88 ~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g--~~pLI~~~l~~l~~~G-----------i~~I~Vv~~-~~~~~i~~~ 153 (409)
..|.+||||||.|||| +...||+|+||++ ++|++++.++.+...+ .-.+++.|+ +..+.+.+|
T Consensus 14 ~~va~viLaGG~GTRL---g~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~~ 90 (323)
T cd04193 14 GKVAVLLLAGGQGTRL---GFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRKF 90 (323)
T ss_pred CCEEEEEECCCccccc---CCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHHH
Confidence 4688999999999999 5778999999983 3699999999998842 124567777 778888888
Q ss_pred HHH
Q 015296 154 LSR 156 (409)
Q Consensus 154 l~~ 156 (409)
|.+
T Consensus 91 ~~~ 93 (323)
T cd04193 91 FKE 93 (323)
T ss_pred HHh
Confidence 886
No 222
>PRK10191 putative acyl transferase; Provisional
Probab=98.14 E-value=9.3e-06 Score=71.64 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=17.4
Q ss_pred eEeCCCCEECCCcEEeCCCccCCceeecCCeEE
Q 015296 358 AIIDKNARIGDNVKIVNSDSVQEAARETDGYFI 390 (409)
Q Consensus 358 ~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i 390 (409)
+.||+++.||.++.|.++..+++++.++.|+.+
T Consensus 93 ~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V 125 (146)
T PRK10191 93 PHIGNGVELGANVIILGDITIGNNVTVGAGSVV 125 (146)
T ss_pred CEECCCcEEcCCCEEeCCCEECCCCEECCCCEE
Confidence 356666666666666555444444444444443
No 223
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.13 E-value=1.2e-05 Score=66.81 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=10.7
Q ss_pred EeCCCCEEc-ceEeCCCCEECCCcEEeC
Q 015296 348 GIGKNSHIK-RAIIDKNARIGDNVKIVN 374 (409)
Q Consensus 348 ~Ig~~~~I~-~~ii~~n~~IG~~~~i~~ 374 (409)
.||+++.|. +++|..+++||++|.|..
T Consensus 58 ~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~ 85 (107)
T cd05825 58 VIGDGAWVAAEAFVGPGVTIGEGAVVGA 85 (107)
T ss_pred EECCCCEECCCCEECCCCEECCCCEECC
Confidence 344444442 333434444444443333
No 224
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.10 E-value=3.9e-05 Score=71.40 Aligned_cols=155 Identities=17% Similarity=0.202 Sum_probs=101.7
Q ss_pred ceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccChhhHHHHHHHH-----------
Q 015296 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRA----------- 157 (409)
Q Consensus 89 ~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~~~~i~~~l~~~----------- 157 (409)
+..+||+|==..|||- -|||--|+| +|||.|+.++..++|.++++|.|... .+.++..+.
T Consensus 3 ~~~viIPAR~~STRLp------gKPLadI~G-kpmI~rV~e~a~~s~~~rvvVATDde--~I~~av~~~G~~avmT~~~h 73 (247)
T COG1212 3 KFVVIIPARLASTRLP------GKPLADIGG-KPMIVRVAERALKSGADRVVVATDDE--RIAEAVQAFGGEAVMTSKDH 73 (247)
T ss_pred ceEEEEecchhcccCC------CCchhhhCC-chHHHHHHHHHHHcCCCeEEEEcCCH--HHHHHHHHhCCEEEecCCCC
Confidence 4457888877888884 499999998 59999999999999999999998753 344444331
Q ss_pred -------HH--------------------------------HHHHHcCCCeE-------------------E--------
Q 015296 158 -------YA--------------------------------KQLKAMKVDTT-------------------I-------- 171 (409)
Q Consensus 158 -------~~--------------------------------e~~~~~~~d~t-------------------i-------- 171 (409)
++ +.+++.+.++. +
T Consensus 74 ~SGTdR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~g~A 153 (247)
T COG1212 74 QSGTDRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLDKEGYA 153 (247)
T ss_pred CCccHHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEEEEEcCCCcE
Confidence 00 12222222211 0
Q ss_pred EEecCCcc--c-C----CCcEEEEEEEEEeHHHHHHHHhhcCCCCCcchhchHHH--HHhCCCeEEEEEecCeE-EEcCC
Q 015296 172 LGLDDERA--K-E----MPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPG--ATSIGMRVQAYLYDGYW-EDIGT 241 (409)
Q Consensus 172 l~~~~~~~--~-e----kp~~~~~Giyif~~~vl~~ll~~~~~~~~d~~~dli~~--ll~~g~~V~a~~~~gyw-~DIgt 241 (409)
|.|+.... . + -|.+.-.|+|-|+++.|.++.......-+. .|-+.+ +++.|++|.....+... ..+||
T Consensus 154 LYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~--~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT 231 (247)
T COG1212 154 LYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSPLEK--IESLEQLRVLENGEKIHVEIVKEVPSIGVDT 231 (247)
T ss_pred EEEEcCCCCCcccccCCcchhheeehHHhHHHHHHHHHhcCCchhHH--HHHHHHHHHHHcCCeeEEEEeccCCCCCCCC
Confidence 11111110 1 1 256667899999999999886643221111 123333 36679999999888665 89999
Q ss_pred HHHHHHHHHhhcc
Q 015296 242 IEAFYNANLGITK 254 (409)
Q Consensus 242 ~edy~~an~~ll~ 254 (409)
++|+..+...+.+
T Consensus 232 ~EDLe~v~~~~~~ 244 (247)
T COG1212 232 PEDLERVRKILSN 244 (247)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999876643
No 225
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.08 E-value=1.6e-05 Score=72.47 Aligned_cols=77 Identities=26% Similarity=0.389 Sum_probs=45.1
Q ss_pred EECCCcEEcc-eEEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEc-ceEeCCCCEEC
Q 015296 290 VIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIG 367 (409)
Q Consensus 290 ~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~-~~ii~~n~~IG 367 (409)
.||++.+|++ . ..|||+-+.||++|.|-.++-+++.--+.. +|.-.++++ |.||+++.|- +-.||+|+.||
T Consensus 75 ~IG~g~fIdHg~---GvVIgeta~IGddv~I~~gVTLGgtg~~~g-~RhPtIg~~---V~IGagAkILG~I~IGd~akIG 147 (194)
T COG1045 75 KIGRGLFIDHGT---GVVIGETAVIGDDVTIYHGVTLGGTGKESG-KRHPTIGNG---VYIGAGAKILGNIEIGDNAKIG 147 (194)
T ss_pred eECCceEEcCCc---eEEEcceeEECCCeEEEcceEecCCCCcCC-CCCCccCCC---eEECCCCEEEcceEECCCCEEC
Confidence 4556666665 2 457777777777777766666654321111 233344444 3566666663 55567777777
Q ss_pred CCcEEe
Q 015296 368 DNVKIV 373 (409)
Q Consensus 368 ~~~~i~ 373 (409)
+|+++.
T Consensus 148 A~sVVl 153 (194)
T COG1045 148 AGSVVL 153 (194)
T ss_pred CCceEc
Confidence 777664
No 226
>PLN02357 serine acetyltransferase
Probab=98.07 E-value=1.4e-05 Score=79.81 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=16.5
Q ss_pred eEeCCCCEECCCcEEeCCCccCCceeecCCeEE
Q 015296 358 AIIDKNARIGDNVKIVNSDSVQEAARETDGYFI 390 (409)
Q Consensus 358 ~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i 390 (409)
++||+||.||.+++|.++..|++++.++.|++|
T Consensus 279 piIGd~V~IGagA~IlggV~IGdga~IGAgSVV 311 (360)
T PLN02357 279 PKIGDGVLIGAGTCILGNITIGEGAKIGAGSVV 311 (360)
T ss_pred ceeCCCeEECCceEEECCeEECCCCEECCCCEE
Confidence 455555555555555544444444444444443
No 227
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.06 E-value=2.2e-05 Score=69.18 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=22.9
Q ss_pred EECCCcEEcc--eEEe--ceEECCCCEECCCCEEece
Q 015296 290 VIGEGCVIKN--CKIH--HSVVGLRSCISEGAIIEDT 322 (409)
Q Consensus 290 ~Ig~g~~I~~--~~I~--~svIg~~~~Ig~~~~I~~s 322 (409)
.||++++|+. |.+. .+.||++|.|++++.|...
T Consensus 3 ~iG~~s~i~~~~~~~~~~~i~IG~~~~I~~~v~i~~~ 39 (145)
T cd03349 3 SVGDYSYGSGPDCDVGGDKLSIGKFCSIAPGVKIGLG 39 (145)
T ss_pred EEeCceeeCCCCceEeCCCeEECCCCEECCCCEECCC
Confidence 4566666655 3343 5788888888888888655
No 228
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.05 E-value=8.9e-06 Score=84.68 Aligned_cols=65 Identities=29% Similarity=0.364 Sum_probs=52.6
Q ss_pred CceEEEEEcCCCCCCCCCCcCCCCCcceEeC--CCcchHHHHHHhhhhC--------------CCceEEEEc-ccChhhH
Q 015296 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLG--ANYRLIDIPVSNCLNS--------------NISKIYVLT-QFNSASL 150 (409)
Q Consensus 88 ~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~--g~~pLI~~~l~~l~~~--------------Gi~~I~Vv~-~~~~~~i 150 (409)
..+.+||||||.||||+ ...||+|+||+ .++||+++.++++... .+ .++|++ .+..+.+
T Consensus 105 gkvavViLAGG~GTRLg---~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~I-p~~IMTS~~t~~~t 180 (482)
T PTZ00339 105 GEVAVLILAGGLGTRLG---SDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTI-YILVLTSSFNHDQT 180 (482)
T ss_pred CCeEEEEECCCCcCcCC---CCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCC-CEEEEeCcchHHHH
Confidence 45899999999999996 57899999995 3469999999999874 23 455554 5778889
Q ss_pred HHHHHH
Q 015296 151 NRHLSR 156 (409)
Q Consensus 151 ~~~l~~ 156 (409)
++||.+
T Consensus 181 ~~~f~~ 186 (482)
T PTZ00339 181 RQFLEE 186 (482)
T ss_pred HHHHHh
Confidence 999876
No 229
>PLN02739 serine acetyltransferase
Probab=98.05 E-value=1e-05 Score=80.24 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=15.5
Q ss_pred CEECCCcEEeCCCccCCceeecCCeEEeCC
Q 015296 364 ARIGDNVKIVNSDSVQEAARETDGYFIKSG 393 (409)
Q Consensus 364 ~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g 393 (409)
++||++|.|..++.|..+.++|++++|+.|
T Consensus 258 p~IGd~V~IGagA~IlG~V~IGd~aiIGAG 287 (355)
T PLN02739 258 PKIGDGALLGACVTILGNISIGAGAMVAAG 287 (355)
T ss_pred cEECCCCEEcCCCEEeCCeEECCCCEECCC
Confidence 444444444444444445555666666666
No 230
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=98.02 E-value=7.2e-06 Score=75.65 Aligned_cols=52 Identities=25% Similarity=0.383 Sum_probs=43.5
Q ss_pred cCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEcccC
Q 015296 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN 146 (409)
Q Consensus 87 ~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~~ 146 (409)
+++|.+||||||+++|| .+|+|++++| +|||+|+++.|....- .++|....+
T Consensus 2 ~~~~~~vILAGG~srRm------~dK~l~~~~g-~~lie~v~~~L~~~~~-~vvi~~~~~ 53 (192)
T COG0746 2 MTPMTGVILAGGKSRRM------RDKALLPLNG-RPLIEHVIDRLRPQVD-VVVISANRN 53 (192)
T ss_pred CCCceEEEecCCccccc------cccccceeCC-eEHHHHHHHHhcccCC-EEEEeCCCc
Confidence 56789999999999999 4799999998 5999999999998864 555555444
No 231
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=97.93 E-value=5.4e-05 Score=62.38 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=5.0
Q ss_pred EEECCCcEEcc
Q 015296 289 SVIGEGCVIKN 299 (409)
Q Consensus 289 ~~Ig~g~~I~~ 299 (409)
+.||++|.|++
T Consensus 22 v~IG~~~~Ig~ 32 (109)
T cd04647 22 ITIGDNVLIGP 32 (109)
T ss_pred eEECCCCEECC
Confidence 34444444444
No 232
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.83 E-value=2.5e-05 Score=76.27 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=67.9
Q ss_pred EEEEECCCcEEcceEEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCEE
Q 015296 287 TDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARI 366 (409)
Q Consensus 287 ~~~~Ig~g~~I~~~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~I 366 (409)
+++.+.+-..||+ +|.||+++.||++|+|++.+...++.+- |. ..++.++.|..+++++|+.|
T Consensus 263 ~nvlvd~~~~iG~----~C~Ig~~vvIG~r~~i~~gV~l~~s~il-----------~~--~~~~~~s~i~s~ivg~~~~I 325 (371)
T KOG1322|consen 263 GNVLVDSIASIGE----NCSIGPNVVIGPRVRIEDGVRLQDSTIL-----------GA--DYYETHSEISSSIVGWNVPI 325 (371)
T ss_pred ccEeeccccccCC----ccEECCCceECCCcEecCceEEEeeEEE-----------cc--ceechhHHHHhhhccccccc
Confidence 3344444444443 8899999999999999988887765321 11 24777888888999999999
Q ss_pred CCCcEEeCCCccCCceeecCCeEEeCCe
Q 015296 367 GDNVKIVNSDSVQEAARETDGYFIKSGI 394 (409)
Q Consensus 367 G~~~~i~~~~~v~~~~~~~~g~~i~~g~ 394 (409)
|.++.|.+.+.+++++.+.+.-++.+|.
T Consensus 326 G~~~~id~~a~lG~nV~V~d~~~vn~g~ 353 (371)
T KOG1322|consen 326 GIWARIDKNAVLGKNVIVADEDYVNEGS 353 (371)
T ss_pred cCceEEecccEeccceEEecccccccce
Confidence 9999998888888888887777777773
No 233
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.74 E-value=7.2e-05 Score=81.79 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=15.3
Q ss_pred CCceeecCCeEEeCCeEEEcCCcEeCCCcc
Q 015296 379 QEAARETDGYFIKSGIVTIIKDALIPSGTI 408 (409)
Q Consensus 379 ~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtv 408 (409)
.+++.+|++++|+.+ .++.++..||++++
T Consensus 661 ~~g~~IGd~a~Ig~~-SvV~~g~~vp~~s~ 689 (695)
T TIGR02353 661 LYGVVMGEGSVLGPD-SLVMKGEEVPAHTR 689 (695)
T ss_pred CCCCEECCCCEECCC-CEEcCCcccCCCCE
Confidence 334444555555555 45555556666654
No 234
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=97.70 E-value=0.00014 Score=66.40 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=18.7
Q ss_pred eEeCCCCEECCCcEEeCCCccCCceeecCCeEEeC
Q 015296 358 AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKS 392 (409)
Q Consensus 358 ~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~ 392 (409)
=.|++|+.||++++|.+.-.|++++++|.+++|..
T Consensus 120 PtIg~~V~IGagAkILG~I~IGd~akIGA~sVVlk 154 (194)
T COG1045 120 PTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLK 154 (194)
T ss_pred CccCCCeEECCCCEEEcceEECCCCEECCCceEcc
Confidence 35566666666666655544444444444444433
No 235
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=97.69 E-value=4.9e-05 Score=76.36 Aligned_cols=50 Identities=12% Similarity=0.210 Sum_probs=43.5
Q ss_pred ceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEccc
Q 015296 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF 145 (409)
Q Consensus 89 ~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~ 145 (409)
.+.+||||||+++||+ .+|.|+|+.| +|||+|+++.+... +++|+|+++.
T Consensus 160 ~i~~IILAGGkSsRMG-----~dKaLL~~~G-kpLl~~~ie~l~~~-~~~ViVv~~~ 209 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG-----KDKALLNYQG-QPHAQYLYDLLAKY-CEQVFLSARP 209 (346)
T ss_pred CceEEEEeccccccCC-----CCcccceeCC-ccHHHHHHHHHHhh-CCEEEEEeCc
Confidence 4689999999999997 4899999997 59999999888764 7899888864
No 236
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.59 E-value=0.00024 Score=77.82 Aligned_cols=81 Identities=20% Similarity=0.304 Sum_probs=47.9
Q ss_pred EEEECCCcEEcc-eEEe--ceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEc-ceEeCCC
Q 015296 288 DSVIGEGCVIKN-CKIH--HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKN 363 (409)
Q Consensus 288 ~~~Ig~g~~I~~-~~I~--~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~-~~ii~~n 363 (409)
.+.||++|.|+. ..++ .+.||++|.|+++|.|.... +.+..++ -+ ++.||+++.|. +|+|..+
T Consensus 597 Ga~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h~-~~~~~~~----------~~--~v~IG~~~~IG~~a~V~~g 663 (695)
T TIGR02353 597 GVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTHL-FEDRVMK----------SD--TVTIGDGATLGPGAIVLYG 663 (695)
T ss_pred CCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEecc-ccccccc----------cC--CeEECCCCEECCCCEECCC
Confidence 366777887777 4444 36888888888888886532 2221110 01 14566666664 5666666
Q ss_pred CEECCCcEEeCCCccCCc
Q 015296 364 ARIGDNVKIVNSDSVQEA 381 (409)
Q Consensus 364 ~~IG~~~~i~~~~~v~~~ 381 (409)
++||+++.|..++.+..+
T Consensus 664 ~~IGd~a~Ig~~SvV~~g 681 (695)
T TIGR02353 664 VVMGEGSVLGPDSLVMKG 681 (695)
T ss_pred CEECCCCEECCCCEEcCC
Confidence 666666666555544443
No 237
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.55 E-value=0.00023 Score=64.82 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=24.0
Q ss_pred EEEECCCcEEcc-eEEe---ceEECCCCEECCCCEEece
Q 015296 288 DSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDT 322 (409)
Q Consensus 288 ~~~Ig~g~~I~~-~~I~---~svIg~~~~Ig~~~~I~~s 322 (409)
+..+|..|.|+. |.+. +..||.++.++.+|.|...
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~ 105 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTN 105 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecC
Confidence 457888888887 6542 5567777777777776554
No 238
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0003 Score=67.94 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=19.8
Q ss_pred EEECCCcEEcc-eEEeceEECCCCEECCCCEEeceEEeC
Q 015296 289 SVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMG 326 (409)
Q Consensus 289 ~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~ 326 (409)
+.||+++.||+ +.+++|+|-++|.|.+|+++-+|+++=
T Consensus 307 VSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw 345 (407)
T KOG1460|consen 307 VSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGW 345 (407)
T ss_pred ceecCCceecCCceeeeeeeccCcEeeccceEEeeeecc
Confidence 44455555554 555555555555555555555555543
No 239
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.40 E-value=0.00031 Score=65.23 Aligned_cols=34 Identities=21% Similarity=0.459 Sum_probs=17.8
Q ss_pred EECCCcEEcc-eEEeceEECCCCEECCCCEEeceEEeC
Q 015296 290 VIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMG 326 (409)
Q Consensus 290 ~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~ 326 (409)
.||+|-.+++ . ..|||+-++||.+|.|-..+-.+
T Consensus 156 ~ig~gilldhat---gvvigeTAvvg~~vSilH~Vtlg 190 (269)
T KOG4750|consen 156 KIGKGILLDHAT---GVVIGETAVVGDNVSILHPVTLG 190 (269)
T ss_pred hcccceeecccc---ceeecceeEeccceeeecceeec
Confidence 3445554544 2 45566666666666555554444
No 240
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.34 E-value=0.0015 Score=59.39 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=13.5
Q ss_pred CCcEEcc-eEEe-ce--EECCCCEECCCCEEec
Q 015296 293 EGCVIKN-CKIH-HS--VVGLRSCISEGAIIED 321 (409)
Q Consensus 293 ~g~~I~~-~~I~-~s--vIg~~~~Ig~~~~I~~ 321 (409)
.+..||. |.+. ++ +.+.+.+||+++.+..
T Consensus 66 ~~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~ 98 (190)
T COG0110 66 KNLTIGDLCFIGVNVVILVGEGITIGDNVVVGP 98 (190)
T ss_pred cceEECCeeEEcCCcEEEecCCeEECCCceECC
Confidence 5555555 4444 22 2344444555555543
No 241
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=97.31 E-value=0.0022 Score=56.54 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=15.1
Q ss_pred EEECC-CcEEcc--eEEe-ceEECCCCEECCC
Q 015296 289 SVIGE-GCVIKN--CKIH-HSVVGLRSCISEG 316 (409)
Q Consensus 289 ~~Ig~-g~~I~~--~~I~-~svIg~~~~Ig~~ 316 (409)
+.|++ .|.++. ++|+ ++.|++++.|..+
T Consensus 8 s~i~~~~~~~~~~~i~IG~~~~I~~~v~i~~~ 39 (145)
T cd03349 8 SYGSGPDCDVGGDKLSIGKFCSIAPGVKIGLG 39 (145)
T ss_pred eeeCCCCceEeCCCeEECCCCEECCCCEECCC
Confidence 44444 344442 4444 6666666666555
No 242
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=97.24 E-value=0.019 Score=59.73 Aligned_cols=68 Identities=16% Similarity=0.286 Sum_probs=52.7
Q ss_pred ccCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhC----CCc-eEEEEcccC-hhhHHHHHHH
Q 015296 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS----NIS-KIYVLTQFN-SASLNRHLSR 156 (409)
Q Consensus 86 ~~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~----Gi~-~I~Vv~~~~-~~~i~~~l~~ 156 (409)
...++.+|.||||.||||+ ..-||.++|+..++.++|..++++... |.+ ..++.++++ .+...++|.+
T Consensus 76 ~L~k~avlkLnGGlGTrmG---~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k 149 (469)
T PLN02474 76 LLDKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEK 149 (469)
T ss_pred HHhcEEEEEecCCcccccC---CCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHH
Confidence 3467889999999999998 367999999976679999998887653 433 557888864 4667777765
No 243
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=97.20 E-value=0.00047 Score=59.64 Aligned_cols=86 Identities=21% Similarity=0.301 Sum_probs=49.2
Q ss_pred EEEEECCCcEEcc-eEEece-------EECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEc-c
Q 015296 287 TDSVIGEGCVIKN-CKIHHS-------VVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-R 357 (409)
Q Consensus 287 ~~~~Ig~g~~I~~-~~I~~s-------vIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~-~ 357 (409)
.++.||..|+|+. |.|+.. +-.-...||+.+.|+...+.++. .||+.+++. +
T Consensus 53 AnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAA-------------------qIgsyVh~Gkn 113 (184)
T KOG3121|consen 53 ANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAA-------------------QIGSYVHLGKN 113 (184)
T ss_pred ccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehh-------------------hheeeeEeccc
Confidence 4466666666666 555422 11122344555555443333431 467667764 7
Q ss_pred eEeCCCCEECCCcEEeCCCccCCceeecCCeEEe
Q 015296 358 AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIK 391 (409)
Q Consensus 358 ~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~ 391 (409)
|+||..|.+.+-|.|..+++++..+.+-.-..++
T Consensus 114 aviGrrCVlkdCc~ild~tVlPpet~vppy~~~~ 147 (184)
T KOG3121|consen 114 AVIGRRCVLKDCCRILDDTVLPPETLVPPYSTIG 147 (184)
T ss_pred eeEcCceEhhhheeccCCcccCcccccCCceEEc
Confidence 7777777777777777777777765554444443
No 244
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.20 E-value=0.00033 Score=46.19 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=23.4
Q ss_pred EEECCCcEEcc-eEEe-ceEECCCCEECCCCEEe
Q 015296 289 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE 320 (409)
Q Consensus 289 ~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I~ 320 (409)
+.|+++|+|+. +.|. +++||++|.|+++|.|+
T Consensus 2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp EEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 57788888887 7666 77778777777777765
No 245
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.18 E-value=0.0023 Score=59.81 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=18.3
Q ss_pred EEECCCcEEcc-eEEeceEECCCCEECCCCEEeceEEeCCc
Q 015296 289 SVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGAD 328 (409)
Q Consensus 289 ~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~~~ 328 (409)
.++++....++ +.|.+.+++.+++|+.+|.+...++..++
T Consensus 34 ~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~d 74 (277)
T COG4801 34 GVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVEND 74 (277)
T ss_pred eeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCc
Confidence 33444444444 44444444445555555555444444443
No 246
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.15 E-value=0.0013 Score=61.28 Aligned_cols=82 Identities=22% Similarity=0.317 Sum_probs=47.5
Q ss_pred EEEECCCcEEcceEEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEc-ceEeCCCCEE
Q 015296 288 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARI 366 (409)
Q Consensus 288 ~~~Ig~g~~I~~~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~-~~ii~~n~~I 366 (409)
+++||+++.+. -.++|....+|+++.|...++..+ +.|+..|.+. |.++.+++-|
T Consensus 22 dViIG~nS~l~-----~~V~g~~iivge~v~i~Gdiva~d-------------------iridmw~kv~gNV~ve~dayi 77 (277)
T COG4801 22 DVIIGKNSMLK-----YGVVGEEIIVGERVRIYGDIVAKD-------------------IRIDMWCKVTGNVIVENDAYI 77 (277)
T ss_pred cEEEcccceee-----eeeeeeeEEeccCcEEeeeEEecc-------------------eeeeeeeEeeccEEEcCceEE
Confidence 34555555444 456677777777777776666544 4666666664 5566666666
Q ss_pred CCCcEEeCCCc------cCCceeecCCeEEeCC
Q 015296 367 GDNVKIVNSDS------VQEAARETDGYFIKSG 393 (409)
Q Consensus 367 G~~~~i~~~~~------v~~~~~~~~g~~i~~g 393 (409)
|+.+.|.++-. ++.+++++.|+.=+++
T Consensus 78 GE~~sI~gkl~v~gdLdig~dV~Ieggfva~g~ 110 (277)
T COG4801 78 GEFSSIKGKLTVIGDLDIGADVIIEGGFVAKGW 110 (277)
T ss_pred eccceeeeeEEEecccccccceEEecCeeecce
Confidence 66666654443 4444555544444444
No 247
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=97.06 E-value=0.021 Score=53.36 Aligned_cols=150 Identities=19% Similarity=0.224 Sum_probs=86.1
Q ss_pred EEEEEcCC-CCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCC-CceEEEEcccCh--hhHHHHHHHH---------
Q 015296 91 LGIILGGG-AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNS--ASLNRHLSRA--------- 157 (409)
Q Consensus 91 ~aIILAaG-~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~G-i~~I~Vv~~~~~--~~i~~~l~~~--------- 157 (409)
-++|+.|- ..|||. -|.|+|++++ |||+++|+++..+. +++|+|.|+... +.++++..+.
T Consensus 4 I~~IiQARmgStRLp------gKvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~G~~vfrGs~ 76 (241)
T COG1861 4 ILVIIQARMGSTRLP------GKVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSHGFYVFRGSE 76 (241)
T ss_pred EEEEeeecccCccCC------cchhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHcCeeEecCCH
Confidence 34455554 556664 3999999985 99999999999984 789999999654 3455555431
Q ss_pred ------HHHHHHHcCCCeEEEEecCC-ccc-------------C--------CCcEEEEEEEEEeHHHHHHHHhhcCCCC
Q 015296 158 ------YAKQLKAMKVDTTILGLDDE-RAK-------------E--------MPYIASMGIYVISKDVMLNLLRDKFPGA 209 (409)
Q Consensus 158 ------~~e~~~~~~~d~til~~~~~-~~~-------------e--------kp~~~~~Giyif~~~vl~~ll~~~~~~~ 209 (409)
|....++.+.+ .|+.+..+ ++. + .+.-.-+++-+|+...|... ...+.+.
T Consensus 77 ~dVL~Rf~~a~~a~~~~-~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~s~~~~p~G~~vEV~~a~~L~~a-~k~~~e~ 154 (241)
T COG1861 77 EDVLQRFIIAIKAYSAD-VVVRVTGDNPFLDPELVDAAVDRHLEKGADYVSNTGAPLGTDVEVMKARALKKA-AKEALEA 154 (241)
T ss_pred HHHHHHHHHHHHhcCCC-eEEEeeCCCCCCCHHHHHHHHHHHHhcCCccccccCCccccceeeeehHHHHHh-Hhhccch
Confidence 11334455666 44444321 210 1 11122356778888888643 2222222
Q ss_pred CcchhchHHHHHhCC--CeEEEE------EecCeEEEcCCHHHHHHHHH
Q 015296 210 NDFGSEVIPGATSIG--MRVQAY------LYDGYWEDIGTIEAFYNANL 250 (409)
Q Consensus 210 ~d~~~dli~~ll~~g--~~V~a~------~~~gyw~DIgt~edy~~an~ 250 (409)
. +-+.+-+.+-.+- +++.-. ..++|...++|.+||..++.
T Consensus 155 ~-~rEhvT~yi~n~P~~fk~~~l~~p~~~~~~~~RltvDt~eD~~~~~~ 202 (241)
T COG1861 155 Y-YREHVTPYIRNNPERFKVAYLEAPEAWKRPDYRLTVDTQEDFALAKA 202 (241)
T ss_pred h-hhhccCHHHHhCCceEEEEeecChhhccCCceEEEeccHHHHHHHHH
Confidence 2 1223333333221 122211 12457788999999987765
No 248
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=97.04 E-value=0.0012 Score=62.28 Aligned_cols=47 Identities=28% Similarity=0.349 Sum_probs=40.7
Q ss_pred EEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCC-CceEEEEccc
Q 015296 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQF 145 (409)
Q Consensus 92 aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~G-i~~I~Vv~~~ 145 (409)
|||+|+|.++||. .|.+.|++| +|||.|+++.+.+++ +++|+|.+..
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~G-kpLi~~ti~~a~~s~~~d~IvVstd~ 49 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCG-KPMIAYSIEAALNSGLFDKVVVSTDD 49 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCC-cCHHHHHHHHHHhCCCCCEEEEeCCC
Confidence 7999999999994 499999998 599999999999986 6778776653
No 249
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=96.94 E-value=0.0022 Score=59.63 Aligned_cols=77 Identities=25% Similarity=0.333 Sum_probs=45.9
Q ss_pred CEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeCCCCEECCCcEEeC--------CCccCCce
Q 015296 311 SCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN--------SDSVQEAA 382 (409)
Q Consensus 311 ~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~~n~~IG~~~~i~~--------~~~v~~~~ 382 (409)
+.|-+.+.|++.++.++.. | |.||+ -++||+|+.|..+++++. ...+++++
T Consensus 149 vdihpaa~ig~gilldhat-------------g---vvige-----TAvvg~~vSilH~Vtlggtgk~~gdrhP~Igd~v 207 (269)
T KOG4750|consen 149 VDIHPAAKIGKGILLDHAT-------------G---VVIGE-----TAVVGDNVSILHPVTLGGTGKGSGDRHPKIGDNV 207 (269)
T ss_pred ccccchhhcccceeecccc-------------c---eeecc-----eeEeccceeeecceeeccccccccccCCcccCCe
Confidence 3455666677777766521 1 23442 455556666666665532 12356666
Q ss_pred eecCCeEEeCCeEEEcCCcEeCCCccC
Q 015296 383 RETDGYFIKSGIVTIIKDALIPSGTII 409 (409)
Q Consensus 383 ~~~~g~~i~~g~v~i~~~~~Ip~gtvi 409 (409)
.+|.|+.|.++ |.||++++|++|+++
T Consensus 208 liGaGvtILgn-V~IGegavIaAGsvV 233 (269)
T KOG4750|consen 208 LIGAGVTILGN-VTIGEGAVIAAGSVV 233 (269)
T ss_pred EEccccEEeCC-eeECCCcEEeccceE
Confidence 67777777777 777777777777764
No 250
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=96.87 E-value=0.035 Score=62.53 Aligned_cols=129 Identities=17% Similarity=0.188 Sum_probs=80.0
Q ss_pred cEEEEEEEEEeHHHHHHHHhhcCC------CCCcchhchHHHHHh---------CCCeEEEEEe-cCeEEEcCCHHHHHH
Q 015296 184 YIASMGIYVISKDVMLNLLRDKFP------GANDFGSEVIPGATS---------IGMRVQAYLY-DGYWEDIGTIEAFYN 247 (409)
Q Consensus 184 ~~~~~Giyif~~~vl~~ll~~~~~------~~~d~~~dli~~ll~---------~g~~V~a~~~-~gyw~DIgt~edy~~ 247 (409)
.+.++|+|+|+.+..+.|++.... ...|+-.|+...|-. .+.++...+. ++.++.+||-..|+.
T Consensus 227 ~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~F~H~GTs~E~l~ 306 (974)
T PRK13412 227 FLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGEFYHYGTSRELIS 306 (974)
T ss_pred EEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCceeEEecCcHHHhc
Confidence 477999999999999877654221 112333455444311 1345656665 457889999988875
Q ss_pred HHHhhccCCCCCCcccCCCCCccCCCcccCCceEecceEEEEEECCCcEEcc--eEEeceEECCCCEECCCCEEeceE
Q 015296 248 ANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN--CKIHHSVVGLRSCISEGAIIEDTL 323 (409)
Q Consensus 248 an~~ll~~~~~~~~~~~~~~~i~~~~~~~~p~~i~~~~i~~~~Ig~g~~I~~--~~I~~svIg~~~~Ig~~~~I~~s~ 323 (409)
....+.+.- .....+.+...-..|+ +-|.|++|..++.+++ +.|++|.|+.+.+||.+|+|...-
T Consensus 307 ~~~~~q~~~-------~~~~~i~~~~~~~~~~----~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv~ 373 (974)
T PRK13412 307 STLAVQNLV-------TDQRRIMHRKVKPHPA----MFVQNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITGVP 373 (974)
T ss_pred CchhHHHHh-------hhhhhhhccccCCCCc----eEEEeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEeccc
Confidence 443333221 1111122211112233 2357899999999998 457899999999999999987763
No 251
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=96.78 E-value=0.0015 Score=42.97 Aligned_cols=31 Identities=29% Similarity=0.523 Sum_probs=18.4
Q ss_pred EEECCCcEEcc-eEEeceEECCCCEECCCCEEe
Q 015296 289 SVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIE 320 (409)
Q Consensus 289 ~~Ig~g~~I~~-~~I~~svIg~~~~Ig~~~~I~ 320 (409)
+.||++|+|+. |.| ...||++|.|+.|+.|.
T Consensus 2 v~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I~ 33 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI-GITIGDGVIIGAGVVIT 33 (34)
T ss_dssp EEE-TTEEE-TT-EE-TSEE-TTEEE-TTEEEE
T ss_pred eEECCCEEECccccc-CCEEcCCCEECCCCEEc
Confidence 47888888888 666 56667777777766654
No 252
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=96.46 E-value=0.0071 Score=59.57 Aligned_cols=66 Identities=15% Similarity=0.321 Sum_probs=52.6
Q ss_pred CceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhC----CCc-eEEEEccc-ChhhHHHHHHH
Q 015296 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS----NIS-KIYVLTQF-NSASLNRHLSR 156 (409)
Q Consensus 88 ~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~----Gi~-~I~Vv~~~-~~~~i~~~l~~ 156 (409)
+.+.+|+||||.||||+ ..-||.++||..++++++..++++... |.+ ..+|.|++ ..+...++|.+
T Consensus 2 ~kvavl~LaGG~GTRLG---~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~ 73 (300)
T cd00897 2 NKLVVLKLNGGLGTSMG---CTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKK 73 (300)
T ss_pred CcEEEEEecCCcccccC---CCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHH
Confidence 45778999999999996 467999999987789999999998752 332 56777776 45678888776
No 253
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=96.30 E-value=0.012 Score=51.38 Aligned_cols=118 Identities=17% Similarity=0.181 Sum_probs=66.3
Q ss_pred EEECCCcEEcc-eEEe-ceEECCCCEECCCCEE----eceEEeCCcccccccchhhhccCCCc------ceEeCCCCEEc
Q 015296 289 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAII----EDTLLMGADYYETDADRRFLAAKGSV------PIGIGKNSHIK 356 (409)
Q Consensus 289 ~~Ig~g~~I~~-~~I~-~svIg~~~~Ig~~~~I----~~s~i~~~~~~~~~~~~~~~~~~g~~------~v~Ig~~~~I~ 356 (409)
+.|.+++++=. +.|+ ..+|+++|+|-+.+++ +.-+|+.++.+|+.+...-.++.|-+ |..||.+...+
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFe 88 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFE 88 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEE
Confidence 35566666655 6666 6677777777777666 34466666666666554433333322 45566666554
Q ss_pred -ceEeCCCCEECCCcEEeCCCccCCceeecCCeEEeCCeEEEcCCcEeCCCcc
Q 015296 357 -RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 408 (409)
Q Consensus 357 -~~ii~~n~~IG~~~~i~~~~~v~~~~~~~~g~~i~~g~v~i~~~~~Ip~gtv 408 (409)
+|-. .-..+|++..|+.++.+++++.+.+||.|+.+ ..|-.+-.+|++|+
T Consensus 89 Vgc~s-~A~kvGd~NVieskayvg~gv~vssgC~vGA~-c~v~~~q~lpent~ 139 (190)
T KOG4042|consen 89 VGCKS-SAKKVGDRNVIESKAYVGDGVSVSSGCSVGAK-CTVFSHQNLPENTS 139 (190)
T ss_pred eechh-hhhhhcCcceEeeeeEecCCcEEcCCceeccc-eEEecccccCCcce
Confidence 3322 23445555555555566666666666666666 34444444444443
No 254
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=96.12 E-value=0.0093 Score=55.27 Aligned_cols=48 Identities=33% Similarity=0.411 Sum_probs=40.8
Q ss_pred EEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCC-CceEEEEcccC
Q 015296 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFN 146 (409)
Q Consensus 92 aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~G-i~~I~Vv~~~~ 146 (409)
|||.|=|..+||. -|.|.+++| +|||+|+++.+.+++ +++|+|.|...
T Consensus 2 aiIpAR~gS~rlp------~Knl~~l~g-kpLi~~~i~~a~~s~~~d~IvVaTd~~ 50 (217)
T PF02348_consen 2 AIIPARGGSKRLP------GKNLKPLGG-KPLIEYVIERAKQSKLIDEIVVATDDE 50 (217)
T ss_dssp EEEEE-SSSSSST------TGGGSEETT-EEHHHHHHHHHHHTTTTSEEEEEESSH
T ss_pred EEEecCCCCCCCC------cchhhHhCC-ccHHHHHHHHHHhCCCCCeEEEeCCCH
Confidence 7999999999984 499999998 599999999999984 78988888754
No 255
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=96.10 E-value=0.07 Score=49.65 Aligned_cols=49 Identities=22% Similarity=0.318 Sum_probs=39.8
Q ss_pred cCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhCCC-ceEEEE
Q 015296 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNI-SKIYVL 142 (409)
Q Consensus 87 ~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi-~~I~Vv 142 (409)
|++.-|||+|=|..+|.. -|-+.+++| +|||.|+|+.+.+++. ++|+|-
T Consensus 1 ~~~~iAiIpAR~gSKgI~------~KNi~~~~g-kpLi~~~I~aA~ns~~fd~VviS 50 (228)
T COG1083 1 MMKNIAIIPARGGSKGIK------NKNIRKFGG-KPLIGYTIEAALNSKLFDKVVIS 50 (228)
T ss_pred CcceEEEEeccCCCCcCC------ccchHHhCC-cchHHHHHHHHhcCCccceEEEc
Confidence 345569999999999985 488999998 5999999999999985 555543
No 256
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=96.00 E-value=0.0068 Score=39.79 Aligned_cols=13 Identities=46% Similarity=0.570 Sum_probs=4.9
Q ss_pred eCCCCEECCCcEE
Q 015296 360 IDKNARIGDNVKI 372 (409)
Q Consensus 360 i~~n~~IG~~~~i 372 (409)
|++++.|+.++.|
T Consensus 4 Ig~~~~i~~~~~i 16 (36)
T PF00132_consen 4 IGDNVIIGPNAVI 16 (36)
T ss_dssp EETTEEEETTEEE
T ss_pred EcCCCEECCCcEe
Confidence 3333333333333
No 257
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=95.66 E-value=0.019 Score=56.96 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=48.6
Q ss_pred EEEEEcCCCCCCCCCCcCCCCCcceEeC--CCcchHHHHHHhhhhCC--------C-ceEEEEccc-ChhhHHHHHHH
Q 015296 91 LGIILGGGAGTRLYPLTKKRAKPAVPLG--ANYRLIDIPVSNCLNSN--------I-SKIYVLTQF-NSASLNRHLSR 156 (409)
Q Consensus 91 ~aIILAaG~GtRl~Plt~~~PK~LlPI~--g~~pLI~~~l~~l~~~G--------i-~~I~Vv~~~-~~~~i~~~l~~ 156 (409)
.+|+||||.||||+ ..-||.++||+ .+++++++.++++.... . -.++|.|++ +.+...++|.+
T Consensus 2 a~vllaGG~GTRLG---~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~ 76 (315)
T cd06424 2 VFVLVAGGLGERLG---YSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEE 76 (315)
T ss_pred EEEEecCCCccccC---CCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHH
Confidence 47999999999997 47899999993 34699999999986532 1 256888885 45677777775
No 258
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=95.58 E-value=0.024 Score=58.46 Aligned_cols=68 Identities=25% Similarity=0.395 Sum_probs=53.2
Q ss_pred ccCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhh----CCC-ceEEEEccc-ChhhHHHHHHH
Q 015296 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNI-SKIYVLTQF-NSASLNRHLSR 156 (409)
Q Consensus 86 ~~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~----~Gi-~~I~Vv~~~-~~~~i~~~l~~ 156 (409)
....+.+|+||||.||||+ ...||.++||..+..+++..++++.. .|. -.++|.+++ ..+...++|.+
T Consensus 53 ~~~kvavl~LaGGlGTrlG---~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~k 126 (420)
T PF01704_consen 53 ALGKVAVLKLAGGLGTRLG---CSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEK 126 (420)
T ss_dssp HTTCEEEEEEEESBSGCCT---ESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHH
T ss_pred hhCCEEEEEEcCcccCccC---CCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHH
Confidence 3467889999999999997 46799999998777899999888775 233 256777775 45778888876
No 259
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=95.57 E-value=0.012 Score=38.60 Aligned_cols=12 Identities=42% Similarity=0.526 Sum_probs=3.7
Q ss_pred eCCCCEECCCcE
Q 015296 360 IDKNARIGDNVK 371 (409)
Q Consensus 360 i~~n~~IG~~~~ 371 (409)
||+||.||.++.
T Consensus 4 IG~~~~ig~~~~ 15 (34)
T PF14602_consen 4 IGDNCFIGANST 15 (34)
T ss_dssp E-TTEEE-TT-E
T ss_pred ECCCEEECcccc
Confidence 334444444443
No 260
>PLN02830 UDP-sugar pyrophosphorylase
Probab=94.73 E-value=0.077 Score=57.21 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=51.2
Q ss_pred cCceEEEEEcCCCCCCCCCCcCCCCCcceEe--CCCcchHHHHHHhhhhC-----------C-CceEEEEcccC-hhhHH
Q 015296 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPL--GANYRLIDIPVSNCLNS-----------N-ISKIYVLTQFN-SASLN 151 (409)
Q Consensus 87 ~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI--~g~~pLI~~~l~~l~~~-----------G-i~~I~Vv~~~~-~~~i~ 151 (409)
...+..|+||||.||||+ ..-||.++|+ ..++++++..++++... + .-.++|.|+++ .+...
T Consensus 126 l~kvavllLaGGlGTRLG---~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~ 202 (615)
T PLN02830 126 AGNAAFVLVAGGLGERLG---YSGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTL 202 (615)
T ss_pred hCcEEEEEecCCcccccC---CCCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHH
Confidence 367889999999999998 4679999998 33369999999997653 1 13578888864 56777
Q ss_pred HHHHH
Q 015296 152 RHLSR 156 (409)
Q Consensus 152 ~~l~~ 156 (409)
++|.+
T Consensus 203 ~~~~~ 207 (615)
T PLN02830 203 KLLER 207 (615)
T ss_pred HHHHH
Confidence 77775
No 261
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=94.51 E-value=0.094 Score=54.19 Aligned_cols=67 Identities=21% Similarity=0.310 Sum_probs=50.8
Q ss_pred cCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhC----CCc-eEEEEcccChhhHHHHHHH
Q 015296 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS----NIS-KIYVLTQFNSASLNRHLSR 156 (409)
Q Consensus 87 ~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~----Gi~-~I~Vv~~~~~~~i~~~l~~ 156 (409)
-..+.+++||||.||||+- .-||.+++|..++++++.+.+.+..+ +++ ..++.++++.++-..++..
T Consensus 103 ~~klAvl~LaGGqGtrlG~---~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~ 174 (472)
T COG4284 103 LGKLAVLKLAGGQGTRLGC---DGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKS 174 (472)
T ss_pred cCceEEEEecCCccccccc---CCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhh
Confidence 4568899999999999984 56999999995579999998887653 433 5677777877555554443
No 262
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=93.23 E-value=0.39 Score=49.62 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=12.4
Q ss_pred EEEEEEEEEeHHHHHHHHh
Q 015296 185 IASMGIYVISKDVMLNLLR 203 (409)
Q Consensus 185 ~~~~Giyif~~~vl~~ll~ 203 (409)
..++|++.|+.+..+.|+.
T Consensus 140 ~ldsG~~~~s~~~~e~L~~ 158 (414)
T PF07959_consen 140 LLDSGIVFFSSKAVESLLY 158 (414)
T ss_pred cccccceeccHHHHHHHHH
Confidence 3467777777776666643
No 263
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=92.68 E-value=0.26 Score=51.75 Aligned_cols=66 Identities=20% Similarity=0.356 Sum_probs=49.4
Q ss_pred CceEEEEEcCCCCCCCCCCcCCCCCcceEeC--CCcchHHHHHHhhhhC--------------CC-ceEEEEccc-Chhh
Q 015296 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLG--ANYRLIDIPVSNCLNS--------------NI-SKIYVLTQF-NSAS 149 (409)
Q Consensus 88 ~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~--g~~pLI~~~l~~l~~~--------------Gi-~~I~Vv~~~-~~~~ 149 (409)
..+.+|+||||.||||+ ...||.+++|+ .++.+++...+++... +. =.++|.|++ ..+.
T Consensus 115 gkvavvlLAGGqGTRLG---~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~ 191 (493)
T PLN02435 115 GKLAVVLLSGGQGTRLG---SSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEA 191 (493)
T ss_pred CCEEEEEeCCCcccccC---CCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHH
Confidence 56778999999999997 46799999775 3368999999886431 11 145888885 5577
Q ss_pred HHHHHHH
Q 015296 150 LNRHLSR 156 (409)
Q Consensus 150 i~~~l~~ 156 (409)
..++|.+
T Consensus 192 T~~ff~~ 198 (493)
T PLN02435 192 TRKFFES 198 (493)
T ss_pred HHHHHHh
Confidence 8888875
No 264
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=92.54 E-value=0.44 Score=49.21 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=32.8
Q ss_pred EEcc-eEEeceEECCCCEECCCCEEeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceEeC
Q 015296 296 VIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIID 361 (409)
Q Consensus 296 ~I~~-~~I~~svIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~ii~ 361 (409)
.+.. +.|.||+|..++.++++++|++|.+.++ +.||++|.|.++-+.
T Consensus 275 ~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~-------------------~~IG~~cIisGv~~~ 322 (414)
T PF07959_consen 275 DSEASSCVINSILEGGVSVGPGSVIEHSHLGGP-------------------WSIGSNCIISGVDIN 322 (414)
T ss_pred ccCCCeeEEEeEecCCceECCCCEEEeeecCCC-------------------CEECCCCEEECCccc
Confidence 3444 5666777788888888888888777665 567777777766443
No 265
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=85.78 E-value=0.98 Score=40.56 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=29.7
Q ss_pred CCCcceEeCC-CcchHHHHHHhhhhCCCceEEEEcccC
Q 015296 110 RAKPAVPLGA-NYRLIDIPVSNCLNSNISKIYVLTQFN 146 (409)
Q Consensus 110 ~PK~LlPI~g-~~pLI~~~l~~l~~~Gi~~I~Vv~~~~ 146 (409)
.+|.|+++.| .+|||+|+++.+. ..+++|+|+++..
T Consensus 3 ~dK~ll~~~g~~~~ll~~~~~~l~-~~~~~iivv~~~~ 39 (178)
T PRK00576 3 RDKATLPLPGGTTTLVEHVVGIVG-QRCAPVFVMAAPG 39 (178)
T ss_pred CCCEeeEeCCCCcCHHHHHHHHHh-hcCCEEEEECCCC
Confidence 4899999996 1499999999765 5689999999754
No 266
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=75.65 E-value=72 Score=33.00 Aligned_cols=67 Identities=21% Similarity=0.372 Sum_probs=47.3
Q ss_pred cCceEEEEEcCCCCCCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhC----CCc-eEEEEcccCh-hhHHHHHHH
Q 015296 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS----NIS-KIYVLTQFNS-ASLNRHLSR 156 (409)
Q Consensus 87 ~~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~----Gi~-~I~Vv~~~~~-~~i~~~l~~ 156 (409)
-+.+..+=|-||.||-|+ ..-||.++++-....+||-.+.+.... +++ ..++..+|+- ++.+++|.+
T Consensus 101 L~KLavlKLNGGlGttmG---c~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~k 173 (498)
T KOG2638|consen 101 LNKLAVLKLNGGLGTTMG---CKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKK 173 (498)
T ss_pred hhheEEEEecCCcCCccc---cCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHH
Confidence 345667889999999998 467999999987788888766655433 343 4566666654 555555554
No 267
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=68.14 E-value=5.7 Score=41.34 Aligned_cols=66 Identities=26% Similarity=0.406 Sum_probs=44.8
Q ss_pred CceEEEEEcCCCCCCCCCCcCCCCCcceEeCCC--cchHHHHHHhhhhC----------CC-ceEEEEcc-cChhhHHHH
Q 015296 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN--YRLIDIPVSNCLNS----------NI-SKIYVLTQ-FNSASLNRH 153 (409)
Q Consensus 88 ~~m~aIILAaG~GtRl~Plt~~~PK~LlPI~g~--~pLI~~~l~~l~~~----------Gi-~~I~Vv~~-~~~~~i~~~ 153 (409)
.++.++++|||.|||++ ...||.+.|++.. +.++++..+.++.. |. -..||.|. +..+.-.+|
T Consensus 96 ~~~a~~llaGgqgtRLg---~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~~ 172 (477)
T KOG2388|consen 96 GKVAVVLLAGGQGTRLG---SSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLEY 172 (477)
T ss_pred CcceEEEeccCceeeec---cCCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHhH
Confidence 46789999999999997 4679999999843 24777777665421 21 13455555 455666666
Q ss_pred HHH
Q 015296 154 LSR 156 (409)
Q Consensus 154 l~~ 156 (409)
+..
T Consensus 173 f~~ 175 (477)
T KOG2388|consen 173 FES 175 (477)
T ss_pred Hhh
Confidence 654
No 268
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=62.03 E-value=13 Score=42.45 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=31.9
Q ss_pred eEEeceEECCCCEECCCCE-EeceEEeCCcccccccchhhhccCCCcceEeCCCCEEcceE-eCCCCEECCCcEE
Q 015296 300 CKIHHSVVGLRSCISEGAI-IEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAI-IDKNARIGDNVKI 372 (409)
Q Consensus 300 ~~I~~svIg~~~~Ig~~~~-I~~s~i~~~~~~~~~~~~~~~~~~g~~~v~Ig~~~~I~~~i-i~~n~~IG~~~~i 372 (409)
+.|.|++|..+++++++.. |++|.|.++ +.||+++.|.++. .+.+..|-+++.|
T Consensus 332 ~~v~ns~~~~~~s~~~~s~~vE~s~l~~~-------------------~~ig~~~Iisgv~~~~~~~~vP~~~ci 387 (974)
T PRK13412 332 MFVQNAVLSGKLTAENATLWIENSHVGEG-------------------WKLASRSIITGVPENSWNLDLPEGVCI 387 (974)
T ss_pred eEEEeeEecCCcccCCCeEEEEeeEecCC-------------------eEEcCCcEEecccccccceecCCCcEE
Confidence 3455667777777766633 666666555 4566666666554 3344555555555
No 269
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=46.65 E-value=51 Score=26.54 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=10.1
Q ss_pred eEeCCCCEEcceEeCCCCEE
Q 015296 347 IGIGKNSHIKRAIIDKNARI 366 (409)
Q Consensus 347 v~Ig~~~~I~~~ii~~n~~I 366 (409)
+.|+.++.+++.+-++++.|
T Consensus 37 v~i~~~~~v~G~i~~~~~~i 56 (101)
T PF04519_consen 37 VKIGGNGEVKGDIKADDVII 56 (101)
T ss_pred EEEcCCCEEEEEEEEeEEEE
Confidence 34555555554444444444
No 270
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=44.51 E-value=39 Score=27.33 Aligned_cols=43 Identities=9% Similarity=0.060 Sum_probs=33.4
Q ss_pred ceEeCCCcchHHHHHHhhhhCC--CceEEEEcccChhhHHHHHHH
Q 015296 114 AVPLGANYRLIDIPVSNCLNSN--ISKIYVLTQFNSASLNRHLSR 156 (409)
Q Consensus 114 LlPI~g~~pLI~~~l~~l~~~G--i~~I~Vv~~~~~~~i~~~l~~ 156 (409)
++|..++.++|.+.++.+.+.+ ..+++++.....+...+.+..
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~ 46 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEE 46 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHH
Confidence 4677766789999999999987 778888888766666555544
No 271
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=37.70 E-value=1.1e+02 Score=26.92 Aligned_cols=28 Identities=7% Similarity=0.133 Sum_probs=15.6
Q ss_pred eEeCCCCEEcceEeCCCCEECCCcEEeC
Q 015296 347 IGIGKNSHIKRAIIDKNARIGDNVKIVN 374 (409)
Q Consensus 347 v~Ig~~~~I~~~ii~~n~~IG~~~~i~~ 374 (409)
|.|....++.+-|-++.-.|.+++.+.+
T Consensus 91 Vei~~~g~v~GdI~~~~i~v~~Ga~f~G 118 (146)
T COG1664 91 VELYPGGRVIGDITTKEITVEEGAIFEG 118 (146)
T ss_pred EEEcCCcEEeeeecccEEEEccCCEEEe
Confidence 4566666665555555555555555543
No 272
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=37.25 E-value=51 Score=27.66 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=14.2
Q ss_pred chHHHHHHhhhhCCCceEEEE
Q 015296 122 RLIDIPVSNCLNSNISKIYVL 142 (409)
Q Consensus 122 pLI~~~l~~l~~~Gi~~I~Vv 142 (409)
|-|+..++.|.+.|.++|+|+
T Consensus 46 P~l~~~l~~l~~~g~~~v~vv 66 (126)
T PRK00923 46 PTIPEALKKLIGTGADKIIVV 66 (126)
T ss_pred CCHHHHHHHHHHcCCCEEEEE
Confidence 677777777777777666553
No 273
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=34.46 E-value=1e+02 Score=28.81 Aligned_cols=50 Identities=18% Similarity=0.140 Sum_probs=35.9
Q ss_pred cEEEEEEEEEeHHHHHHHHhhcCCCCCcchhchHHHHHhCCCeEEEEEecC-eEEEcCCHHHHHHHHHh
Q 015296 184 YIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLG 251 (409)
Q Consensus 184 ~~~~~Giyif~~~vl~~ll~~~~~~~~d~~~dli~~ll~~g~~V~a~~~~g-yw~DIgt~edy~~an~~ 251 (409)
+..|.++|+++++.|.+ . ..+. |.++..|..+. .-+||++++||..|...
T Consensus 169 y~~nga~y~~~~~~~~~---~-----~~~~----------~~~~~~~~m~~~~~iDID~~~D~~~ae~l 219 (222)
T TIGR03584 169 YHDAGQFYWGKSQAWLE---S-----GPIF----------SPHSIPIVLPRHLVQDIDTLEDWERAELL 219 (222)
T ss_pred eeeCCeEEEEEHHHHHh---c-----CCcc----------CCCcEEEEeCccceeCCCCHHHHHHHHHH
Confidence 67799999999998742 1 0111 34667777655 47999999999988763
No 274
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=29.08 E-value=82 Score=29.22 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=28.9
Q ss_pred HHHHHhCCCeEEEEEecCeEEEcCCHHHHHHHHH
Q 015296 217 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANL 250 (409)
Q Consensus 217 i~~ll~~g~~V~a~~~~gyw~DIgt~edy~~an~ 250 (409)
+..+-++|..+..|..-+...||+||+|+.++.+
T Consensus 149 l~~Ark~G~~~~~~dSf~l~~DVDtpeDL~e~~~ 182 (210)
T COG1920 149 LEEARKRGLVVLTYDSFGLSADVDTPEDLVEAFI 182 (210)
T ss_pred HHHHHHcCCEEEEecccceecCCCCHHHHHHHHH
Confidence 4555677999999988888999999999998875
No 275
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=25.22 E-value=1.1e+02 Score=30.93 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=38.0
Q ss_pred ccCceEEEEEcCCCCCCCCCCc----------CCCC-----CcceEeCCCcchHHHHHHhhhhCCCceEEEEcc
Q 015296 86 ASRSVLGIILGGGAGTRLYPLT----------KKRA-----KPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQ 144 (409)
Q Consensus 86 ~~~~m~aIILAaG~GtRl~Plt----------~~~P-----K~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~ 144 (409)
+|+.|.++||.| .|||..-.. +.++ -+++.+. . |.|...++.|.+.|.++|+|+--
T Consensus 2 ~~~~~~aiLLvg-HGSRdp~~~~~~~~La~~l~~~~~~~V~~aFLE~~-e-Psl~eal~~l~~~G~~~IvVvPl 72 (335)
T PRK05782 2 DRQSNTAIILIG-HGSRRETFNSDMEGMANYLKEKLGVPIYLTYNEFA-E-PNWRSLLNEIIKEGYRRVIIALA 72 (335)
T ss_pred CCCCCceEEEEe-cCCCChHHHHHHHHHHHHHHhccCCceEEEEeccC-C-CCHHHHHHHHHHCCCCEEEEecc
Confidence 456678888877 899953210 0111 1344455 3 99999999999999999877553
No 276
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=24.37 E-value=1.2e+02 Score=30.74 Aligned_cols=56 Identities=11% Similarity=0.208 Sum_probs=43.9
Q ss_pred CCCCCCcCCCCCcceEeCCCcchHHHHHHhhhhC-CCceEEEEcccC--hhhHHHHHHH
Q 015296 101 TRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFN--SASLNRHLSR 156 (409)
Q Consensus 101 tRl~Plt~~~PK~LlPI~g~~pLI~~~l~~l~~~-Gi~~I~Vv~~~~--~~~i~~~l~~ 156 (409)
.++.||....+.-++.|-.+...|.++|+.|.++ ||++..+|.++. ++.+++.+..
T Consensus 23 ~~f~~l~~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~~~~ein~~v~~ 81 (356)
T PF05060_consen 23 DKFGPLANDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDFYSEEINDLVQS 81 (356)
T ss_pred hhcCCCCCCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccCChHHHHHHHHh
Confidence 3566676677788888986545899999999987 999999999864 4677777664
No 277
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=23.12 E-value=99 Score=27.72 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=29.1
Q ss_pred CCCCCC-CcCCCCCcceEeCCCcchHHHHHHhhhhCCCceEEEEccc
Q 015296 100 GTRLYP-LTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF 145 (409)
Q Consensus 100 GtRl~P-lt~~~PK~LlPI~g~~pLI~~~l~~l~~~Gi~~I~Vv~~~ 145 (409)
-|||.| |+.. ...-+. +|||+|+++.+...++.+++++++.
T Consensus 13 KtRL~~~l~~~---~~~~l~--~~ll~~~l~~l~~~~~~~vvvv~~~ 54 (195)
T TIGR03552 13 KSRLSPVLSPE---EREELA--LAMLRDVITALRGAGAGAVLVVSPD 54 (195)
T ss_pred cccccccCCHH---HHHHHH--HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 467665 2221 233344 5999999999999988888888874
No 278
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=21.17 E-value=1.1e+02 Score=27.14 Aligned_cols=54 Identities=9% Similarity=-0.010 Sum_probs=28.8
Q ss_pred EEEeHHHHHHHHhhcCCCCCcchhchHHHHHhCCCeEEEEEe--cCeEEEcCCHHHHHHHHH
Q 015296 191 YVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLY--DGYWEDIGTIEAFYNANL 250 (409)
Q Consensus 191 yif~~~vl~~ll~~~~~~~~d~~~dli~~ll~~g~~V~a~~~--~gyw~DIgt~edy~~an~ 250 (409)
-+|+++.+..+.+....+... ++.++.. ..+..+.+ ++...||+|++||..+++
T Consensus 120 ~~~~~~l~~~l~~~~~~g~~~-~~~~l~~-----~~~~~v~~~~~~~f~ninTped~~~~~~ 175 (178)
T PRK00576 120 AVYRTDLAERVDALVGAGERS-MRALVDA-----SDAQRIVMPESRPLTNVNTAADLPAPMQ 175 (178)
T ss_pred EEehHHHHHHHHHHHHcCCcc-HHHHHHh-----CCceEecCCCCCccccCCCHHHHHHhcc
Confidence 357777776554322111111 2344432 23333333 345679999999977654
Done!