BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015299
         (409 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1M7S|A Chain A, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
           Syringae
 pdb|1M7S|B Chain B, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
           Syringae
 pdb|1M7S|C Chain C, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
           Syringae
 pdb|1M7S|D Chain D, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
           Syringae
          Length = 484

 Score = 29.6 bits (65), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)

Query: 338 EKMEEFGVDEIPDPV---KGNQVNGNFTASAMIEDI 370
           +K++ F  + IP+ V   +G  V G FTASA I D+
Sbjct: 36  QKLQRFDRERIPERVVHARGTGVKGEFTASADISDL 71


>pdb|2YWM|A Chain A, Crystal Structure Of Glutaredoxin-Like Protein From
           Aquifex Aeolicus
 pdb|2YWM|B Chain B, Crystal Structure Of Glutaredoxin-Like Protein From
           Aquifex Aeolicus
 pdb|2YWM|C Chain C, Crystal Structure Of Glutaredoxin-Like Protein From
           Aquifex Aeolicus
 pdb|2YWM|D Chain D, Crystal Structure Of Glutaredoxin-Like Protein From
           Aquifex Aeolicus
          Length = 229

 Score = 28.9 bits (63), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 285 RGPVFATAFSPLMMIIVAIMGSFILAENIY-LGSVLGAILIVVGLYSVLWGKHKEKMEEF 343
           + PV    FS  +          +L E +  +G  +G   I + +YS     HKE+ E++
Sbjct: 20  KEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPF--THKEETEKY 77

Query: 344 GVDEIP 349
           GVD +P
Sbjct: 78  GVDRVP 83


>pdb|2AYT|A Chain A, The Crystal Structure Of A Protein Disulfide
           Oxidoreductase From Aquifex Aeolicus
 pdb|2AYT|B Chain B, The Crystal Structure Of A Protein Disulfide
           Oxidoreductase From Aquifex Aeolicus
          Length = 237

 Score = 28.5 bits (62), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 285 RGPVFATAFSPLMMIIVAIMGSFILAENI-YLGSVLGAILIVVGLYSVLWGKHKEKMEEF 343
           + PV    FS  +          +L E +  +G  +G   I + +YS     HKE+ E++
Sbjct: 20  KEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPF--THKEETEKY 77

Query: 344 GVDEIP 349
           GVD +P
Sbjct: 78  GVDRVP 83


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.137    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,428,196
Number of Sequences: 62578
Number of extensions: 368320
Number of successful extensions: 884
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 881
Number of HSP's gapped (non-prelim): 6
length of query: 409
length of database: 14,973,337
effective HSP length: 101
effective length of query: 308
effective length of database: 8,652,959
effective search space: 2665111372
effective search space used: 2665111372
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)