Query 015299
Match_columns 409
No_of_seqs 228 out of 1966
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 10:10:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015299.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015299hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.9 7.3E-10 2.5E-14 90.2 3.9 69 266-334 35-104 (137)
2 3b5d_A Multidrug transporter E 98.7 1.6E-07 5.4E-12 73.6 11.9 100 16-158 3-103 (110)
3 2i68_A Protein EMRE; transmemb 98.7 5.6E-08 1.9E-12 79.0 7.8 69 84-158 34-103 (137)
4 3b5d_A Multidrug transporter E 98.5 1.1E-07 3.8E-12 74.5 5.8 69 266-334 35-104 (110)
5 1pw4_A Glycerol-3-phosphate tr 32.1 3E+02 0.01 25.2 20.9 16 118-133 197-212 (451)
6 3rko_J NADH-quinone oxidoreduc 29.4 2.4E+02 0.0082 23.3 12.0 31 302-332 127-159 (184)
7 3l1l_A Arginine/agmatine antip 27.3 91 0.0031 29.3 6.1 44 295-338 388-431 (445)
8 3b9w_A Ammonium transporter fa 18.1 6E+02 0.021 23.8 22.7 61 264-325 263-330 (407)
9 4aps_A DI-OR tripeptide H+ sym 13.8 7.4E+02 0.025 22.8 12.7 159 185-354 47-216 (491)
10 2jo1_A Phospholemman; FXYD1, N 11.2 66 0.0023 21.9 0.5 38 318-355 22-59 (72)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.89 E-value=7.3e-10 Score=90.15 Aligned_cols=69 Identities=14% Similarity=0.260 Sum_probs=53.4
Q ss_pred HHHHHhHHHHHHHHHHHhhcCceEeeec-hhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeeec
Q 015299 266 AGIVTSSISYFVQGLVIKKRGPVFATAF-SPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWG 334 (409)
Q Consensus 266 ~g~~~~~~~~~l~~~al~~~~~~~~s~~-~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~ 334 (409)
+++++++++++++.+++++.+++++..+ ..+.|+++++++++++||++++.+++|+++|++|+++....
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 5666788999999999999999999998 89999999999999999999999999999999999988654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.72 E-value=1.6e-07 Score=73.64 Aligned_cols=100 Identities=14% Similarity=0.212 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 015299 16 PYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQN 95 (409)
Q Consensus 16 g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 95 (409)
.+++++++.++-.....+.|.. ++.. +.+. .+.+++..++++.
T Consensus 3 ~~l~l~~a~~~e~~~~~~lK~s--~~~~---------------------------------~~~~--~~~~~~~~~~~~~ 45 (110)
T 3b5d_A 3 PYIYLGGAILAEVIGTTLMKFS--EGFT---------------------------------RLWP--SVGTIICYCASFW 45 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--cCcc---------------------------------hHHH--HHHHHHHHHHHHH
Confidence 4677777888888888888876 2211 1111 2455666688899
Q ss_pred HHHhhhcccCchhhhhh-cchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHH
Q 015299 96 FYYAGLKFTSPTFSCAM-SNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTL 158 (409)
Q Consensus 96 ~~~~al~~~~~~~~~ii-~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~ 158 (409)
++.+++++.|++.+..+ ..+.|+++.++++++++|++++. +++|+.+.++|++++..
T Consensus 46 ~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 46 LLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 99999999999999988 79999999999999999999999 79999999999999874
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.66 E-value=5.6e-08 Score=78.99 Aligned_cols=69 Identities=13% Similarity=0.198 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHhhhcccCchhhhhh-cchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHH
Q 015299 84 VLALLGPVIDQNFYYAGLKFTSPTFSCAM-SNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTL 158 (409)
Q Consensus 84 ~~g~~~~~~~~~~~~~al~~~~~~~~~ii-~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~ 158 (409)
+.+++..++++.+++++++++|++.+..+ .++.|++++++++++++|++++. +++|+++.++|++++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 45666668899999999999999999998 89999999999999999999999 79999999999999975
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.52 E-value=1.1e-07 Score=74.50 Aligned_cols=69 Identities=14% Similarity=0.260 Sum_probs=63.3
Q ss_pred HHHHHhHHHHHHHHHHHhhcCceEeeec-hhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeeec
Q 015299 266 AGIVTSSISYFVQGLVIKKRGPVFATAF-SPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWG 334 (409)
Q Consensus 266 ~g~~~~~~~~~l~~~al~~~~~~~~s~~-~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~ 334 (409)
.++++..+++.++.+++|+.+.+++..+ ..+.|+++.+++++++||++++.+++|.++|++|+++....
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4555678899999999999999999888 89999999999999999999999999999999999988654
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=32.06 E-value=3e+02 Score=25.16 Aligned_cols=16 Identities=6% Similarity=0.032 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhhhcc
Q 015299 118 AMTFVMAVICRMEKIN 133 (409)
Q Consensus 118 i~~~lls~l~l~e~~~ 133 (409)
+...++.+++.+|+..
T Consensus 197 ~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 197 ILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHHHHCCCSST
T ss_pred HHHHHHHHhhccCCHh
Confidence 3344555566666443
No 6
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=29.39 E-value=2.4e+02 Score=23.27 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=23.0
Q ss_pred HHHHHHHhccccchhhhhhHHHHH--hhhheee
Q 015299 302 AIMGSFILAENIYLGSVLGAILIV--VGLYSVL 332 (409)
Q Consensus 302 ~l~~~~~~~e~~~~~~~iG~~li~--~g~~l~~ 332 (409)
--+|..++++-.-+.+.++.+|.+ +|.+...
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLa 159 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVG 159 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888899988889999988875 4544443
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=27.31 E-value=91 Score=29.25 Aligned_cols=44 Identities=5% Similarity=-0.093 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeeeccccc
Q 015299 295 PLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKE 338 (409)
Q Consensus 295 ~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~~~~~ 338 (409)
..-++++.++..+..-.......+.|.++++.|+.++.+.++++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 388 LAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34445555544443322222345668888888887776655443
No 8
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=18.07 E-value=6e+02 Score=23.79 Aligned_cols=61 Identities=13% Similarity=0.078 Sum_probs=33.7
Q ss_pred HHHHHHHhHHHHHHHHH-------HHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHH
Q 015299 264 AYAGIVTSSISYFVQGL-------VIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIV 325 (409)
Q Consensus 264 ~~~g~~~~~~~~~l~~~-------al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~ 325 (409)
+.+|+++..++++...+ -++.-++..+-.+=.+-=+++.+..-++ ....+..|++|.+.++
T Consensus 263 ~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glf-a~~~~~~Ql~g~~~~~ 330 (407)
T 3b9w_A 263 FVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHGLPGLLGGFSAILI-VPGIAVAQLTGIGITL 330 (407)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTTHHHHHHHHHHHHH-STTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecchHHHHHHHHHHHHH-ccCCcHHHHHHHHHHH
Confidence 33455555565554432 1344566555555555566666665433 3333457888887763
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=13.76 E-value=7.4e+02 Score=22.78 Aligned_cols=159 Identities=12% Similarity=-0.064 Sum_probs=0.0
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hCCCchhHHHHHHHHHHHHHHHHHHHhcCCCcccccccchhHHHH
Q 015299 185 ASSEKDWFLGSIFLIIATLAWASLFVLQTKALET-YKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAA 263 (409)
Q Consensus 185 ~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 263 (409)
+.-+.+...--.+.....++..+......++.++ . +.............+....... .......+...
T Consensus 47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~--g~r~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 115 (491)
T 4aps_A 47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRII--GARPAVFWGGVLIMLGHIVLAL---------PFGASALFGSI 115 (491)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHHHS---------CCSTTHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHH---------hhhHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHHhhcCceE---------eeechhhHHHHHHHHHHHHhc-cccchhhhhhHHHHHhhhheeee
Q 015299 264 AYAGIVTSSISYFVQGLVIKKRGPVF---------ATAFSPLMMIIVAIMGSFILA-ENIYLGSVLGAILIVVGLYSVLW 333 (409)
Q Consensus 264 ~~~g~~~~~~~~~l~~~al~~~~~~~---------~s~~~~l~pv~a~l~~~~~~~-e~~~~~~~iG~~li~~g~~l~~~ 333 (409)
+..|+......-.......+..++.. ......+...++..++-.+.+ ....+..++.+++.+++.++...
T Consensus 116 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 195 (491)
T 4aps_A 116 ILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYF 195 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ccccccccccCCCCCCCCCcc
Q 015299 334 GKHKEKMEEFGVDEIPDPVKG 354 (409)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~ 354 (409)
.+++..+++.++.+.+.+.++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~ 216 (491)
T 4aps_A 196 GGKKTLDPHYLRPTDPLAPEE 216 (491)
T ss_dssp HHHTTCCSCCSCCSCCCSHHH
T ss_pred hCcccccccccCCCCccccch
No 10
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=11.24 E-value=66 Score=21.92 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=0.0
Q ss_pred hhhHHHHHhhhheeeeccccccccccCCCCCCCCCccC
Q 015299 318 VLGAILIVVGLYSVLWGKHKEKMEEFGVDEIPDPVKGN 355 (409)
Q Consensus 318 ~iG~~li~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (409)
++++++.++|++++...|-+-+..+++....+.+++.+
T Consensus 22 ifA~vLfi~GI~iilS~KckCk~~qk~r~~~p~~e~g~ 59 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRRCRCKFNQQQRTGEPDEEEGT 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTSSSCCCTTTST
T ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCCCCCCcccccc
Done!