Query 015299
Match_columns 409
No_of_seqs 228 out of 1966
Neff 9.2
Searched_HMMs 13730
Date Mon Mar 25 10:10:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015299.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015299hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 28.3 1.4E+02 0.0099 25.0 9.9 34 203-238 70-103 (447)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 20.4 51 0.0037 16.1 2.9 19 192-210 2-20 (27)
3 d1wpga4 f.33.1.1 (A:1-124,A:24 11.9 4.2E+02 0.031 22.8 16.6 65 40-104 263-337 (472)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 8.7 4.7E+02 0.034 21.1 27.6 10 39-48 53-62 (447)
5 d1q90a3 f.23.23.1 (A:248-292) 7.6 2.1E+02 0.015 16.1 3.5 30 190-219 3-32 (45)
6 d1u7ga_ f.44.1.1 (A:) Ammonium 6.9 6.2E+02 0.045 21.1 20.2 24 82-105 198-221 (383)
7 d1iwga8 f.35.1.1 (A:513-566,A: 5.6 5.6E+02 0.041 19.2 10.6 28 300-327 96-123 (222)
8 d2axtl1 f.23.31.1 (L:1-37) Pho 5.5 2.4E+02 0.018 14.8 4.3 23 187-209 13-35 (37)
9 d1v54m_ f.23.7.1 (M:) Mitochon 4.8 1.8E+02 0.013 16.2 1.7 23 129-156 7-29 (43)
10 d2axtt1 f.23.34.1 (T:1-30) Pho 4.1 2.7E+02 0.02 13.6 4.1 11 228-238 5-15 (30)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=28.29 E-value=1.4e+02 Score=25.01 Aligned_cols=34 Identities=3% Similarity=-0.053 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHH
Q 015299 203 LAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQA 238 (409)
Q Consensus 203 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 238 (409)
+.+++.......+.++. +............++..
T Consensus 70 ~~~~~~~~~~G~l~Dr~--g~r~~~~~~~~~~~~~~ 103 (447)
T d1pw4a_ 70 IAYGFSKFIMGSVSDRS--NPRVFLPAGLILAAAVM 103 (447)
T ss_dssp HHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc--CchHHHHHHHHHHHHHH
Confidence 33444444444555555 43333333333333333
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=20.41 E-value=51 Score=16.09 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 015299 192 FLGSIFLIIATLAWASLFV 210 (409)
Q Consensus 192 ~~G~~~~l~aa~~~a~~~v 210 (409)
.+|.+.+-+++++|+.|.-
T Consensus 2 vlgli~~tl~glf~aayqq 20 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHH
Confidence 4688888888888888753
No 3
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=11.94 E-value=4.2e+02 Score=22.75 Aligned_cols=65 Identities=9% Similarity=0.069 Sum_probs=35.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHH------Hhhhc----cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 015299 40 RGMSHYVLVVYRHAFATAVIAPFAF------FLERK----AQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFT 104 (409)
Q Consensus 40 ~~~~~~~~~~~r~~~a~i~l~~~~~------~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~ 104 (409)
.-++|.++++.-++.-.+..+.+.. ..+++ ..+.++++.+..+...|..........+++...+.
T Consensus 263 ~pl~~~qILwinli~d~lpaiaL~~ep~d~~iM~~~Pr~~~~~li~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~ 337 (472)
T d1wpga4 263 EALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYA 337 (472)
T ss_dssp CSCCHHHHHHHHHTTTHHHHHHHTTCCCCSGGGGSCCCCTTCCSSCTHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred ccccHHHHHHHHHHhHHHHHHHHhcCCCchhhhcCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4588999998887766554444332 11111 11223556666666666655455555666665553
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=8.67 E-value=4.7e+02 Score=21.12 Aligned_cols=10 Identities=30% Similarity=0.242 Sum_probs=4.8
Q ss_pred hCCCChHHHH
Q 015299 39 NRGMSHYVLV 48 (409)
Q Consensus 39 ~~~~~~~~~~ 48 (409)
+.++++.++.
T Consensus 53 ~~g~s~~~~g 62 (447)
T d1pw4a_ 53 EQGFSRGDLG 62 (447)
T ss_dssp SSTTCSSCHH
T ss_pred HhCcCHHHHH
Confidence 3455554443
No 5
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.57 E-value=2.1e+02 Score=16.05 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 015299 190 DWFLGSIFLIIATLAWASLFVLQTKALETY 219 (409)
Q Consensus 190 ~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~ 219 (409)
....|.+..+++.+..-+..++-||-.++.
T Consensus 3 ~Rv~gll~F~~~v~laQi~LVLKKKQfEKV 32 (45)
T d1q90a3 3 ARIQGLLVFFSFVLLTQVLLVLKKKQFEKV 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346787777777777777888877766654
No 6
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=6.95 E-value=6.2e+02 Score=21.10 Aligned_cols=24 Identities=17% Similarity=-0.092 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccC
Q 015299 82 IFVLALLGPVIDQNFYYAGLKFTS 105 (409)
Q Consensus 82 ~~~~g~~~~~~~~~~~~~al~~~~ 105 (409)
+..+|.+....++..|+-+-....
T Consensus 198 ~~~lG~~iLw~gW~gFN~gs~~~~ 221 (383)
T d1u7ga_ 198 MVFTGTAILYIGWFGFNAGSAGTA 221 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSSS
T ss_pred hhhHHHHHHHHHHHHhcccccccc
Confidence 345555555677777777665543
No 7
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.62 E-value=5.6e+02 Score=19.22 Aligned_cols=28 Identities=11% Similarity=-0.039 Sum_probs=20.0
Q ss_pred HHHHHHHHHhccccchhhhhhHHHHHhh
Q 015299 300 IVAIMGSFILAENIYLGSVLGAILIVVG 327 (409)
Q Consensus 300 ~a~l~~~~~~~e~~~~~~~iG~~li~~g 327 (409)
.+.+.+..+.+.+++....+|.++.+.-
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchhhh
Confidence 3445566677999999888888775543
No 8
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.45 E-value=2.4e+02 Score=14.79 Aligned_cols=23 Identities=22% Similarity=0.644 Sum_probs=17.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHH
Q 015299 187 SEKDWFLGSIFLIIATLAWASLF 209 (409)
Q Consensus 187 ~~~~~~~G~~~~l~aa~~~a~~~ 209 (409)
......+|.++...-++.++-|.
T Consensus 13 NrtsLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 13 NRTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHh
Confidence 34556789888888888887765
No 9
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.76 E-value=1.8e+02 Score=16.23 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=13.9
Q ss_pred hhhcccccccccchhhhHHHHHHHHHHH
Q 015299 129 MEKINMKKVRCQAKVVGTAVTVAGAMIM 156 (409)
Q Consensus 129 ~e~~~~~~~~~~~~~~~~~i~~~Gv~li 156 (409)
+|+++..+ +.+|+.+++++...-
T Consensus 7 ~~~ls~~E-----~aigLt~~f~~~L~P 29 (43)
T d1v54m_ 7 KTPTSPKE-----QAIGLSVTFLSFLLP 29 (43)
T ss_dssp SSCCCHHH-----HHHHHHHHHHHHHHH
T ss_pred CCCCCHHH-----HHHHHHHHHHHHHcc
Confidence 34455555 677777777665543
No 10
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.14 E-value=2.7e+02 Score=13.58 Aligned_cols=11 Identities=9% Similarity=0.205 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 015299 228 SLMCFVGTLQA 238 (409)
Q Consensus 228 ~~~~~~~~i~~ 238 (409)
.|.+.+++++.
T Consensus 5 ~yv~ifac~i~ 15 (30)
T d2axtt1 5 TYVFIFACIIA 15 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred ehHHHHHHHHH
Confidence 34444444443
Done!