BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015301
(409 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 138/342 (40%), Gaps = 69/342 (20%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + A+S + IK++ + K +K I L I+D + S D
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 80
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
LV AS + I DV S + KG +F F+ +
Sbjct: 81 NLLVSASDDKTLKIWDVSS------GKCLKTLKG---------HSNYVFCCNFNPQSNLI 125
Query: 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217
V+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT--- 181
Query: 218 ISKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 182 -----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---------- 226
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 227 ------------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGS 259
Query: 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 374
DN VYI++L + V KL H V HP ++ S++
Sbjct: 260 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 178 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237
+ H V++V F+ G + + S D L K+W G+ + GH GI+ +
Sbjct: 20 FTLAGHTKAVSSVKFS-PNGEWLAASSADKLIKIWGAY----DGKFEKTISGHKLGISDV 74
Query: 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 297
D +S D+T K+WD+
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 100
Query: 298 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 357
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 101 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154
Query: 358 VRDCCWHPIYPMLISSSWD 376
V ++ +++SSS+D
Sbjct: 155 VSAVHFNRDGSLIVSSSYD 173
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 114/289 (39%), Gaps = 46/289 (15%)
Query: 7 VNYSGRGRFSAADSCHVLSR-YLPVNGPWK--VDGMNSRVYTSQFSNDGSFFVAASQESN 63
V +S G + AA S L + + +G ++ + G + +S+D + V+AS +
Sbjct: 32 VKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT 91
Query: 64 IKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVG-------- 115
+K+++V K K + K + + +P +V S V I DV
Sbjct: 92 LKIWDVSSG-KCLKTL--KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Query: 116 --------------------SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ 155
SS+ + L + + G D+D + VKFS +G+
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 156 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWD 213
++AA DN + ++D KC HK++ + F+ G I SGS+D+L +W+
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Query: 214 RRC--FISKGRANGVLMGHLEGITFIDSRRDGRYFISNG--KDQTTKLW 258
+ + K L GH + + S D+T KLW
Sbjct: 269 LQTKEIVQK------LQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 321 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 380
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 381 RWEI 384
W++
Sbjct: 136 IWDV 139
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 88/342 (25%), Positives = 138/342 (40%), Gaps = 69/342 (20%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 83
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
LV AS + I DV S + KG +F F+ +
Sbjct: 84 NLLVSASDDKTLKIWDVSS------GKCLKTLKG---------HSNYVFCCNFNPQSNLI 128
Query: 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217
V+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT--- 184
Query: 218 ISKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 185 -----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---------- 229
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 230 ------------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGS 262
Query: 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 374
DN VYI++L + V KL H V HP ++ S++
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 178 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 23 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 77
Query: 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 297
D +S D+T K+WD+
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 103
Query: 298 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 357
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 104 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 157
Query: 358 VRDCCWHPIYPMLISSSWD 376
V ++ +++SSS+D
Sbjct: 158 VSAVHFNRDGSLIVSSSYD 176
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 12/149 (8%)
Query: 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK 175
SS+ + L + + G D+D + VKFS +G+ ++AA DN + ++D K
Sbjct: 172 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 231
Query: 176 CSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWDRRC--FISKGRANGVLMGHL 231
C HK++ + F+ G I SGS+D+L +W+ + + K L GH
Sbjct: 232 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK------LQGHT 285
Query: 232 EGITFIDSRRDGRYFISNG--KDQTTKLW 258
+ + S D+T KLW
Sbjct: 286 DVVISTACHPTENIIASAALENDKTIKLW 314
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 321 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 380
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 381 RWEI 384
W++
Sbjct: 139 IWDV 142
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 88/342 (25%), Positives = 138/342 (40%), Gaps = 69/342 (20%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 94
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
LV AS + I DV S + KG +F F+ +
Sbjct: 95 NLLVSASDDKTLKIWDVSS------GKCLKTLKG---------HSNYVFCCNFNPQSNLI 139
Query: 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217
V+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 140 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT--- 195
Query: 218 ISKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 196 -----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---------- 240
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 241 ------------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGS 273
Query: 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 374
DN VYI++L + V KL H V HP ++ S++
Sbjct: 274 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 315
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 178 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 34 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 88
Query: 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 297
D +S D+T K+WD+
Sbjct: 89 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 114
Query: 298 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 357
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 115 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 168
Query: 358 VRDCCWHPIYPMLISSSWD 376
V ++ +++SSS+D
Sbjct: 169 VSAVHFNRDGSLIVSSSYD 187
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 12/149 (8%)
Query: 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK 175
SS+ + L + + G D+D + VKFS +G+ ++AA DN + ++D K
Sbjct: 183 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 242
Query: 176 CSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWDRRC--FISKGRANGVLMGHL 231
C HK++ + F+ G I SGS+D+L +W+ + + K L GH
Sbjct: 243 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK------LQGHT 296
Query: 232 EGITFIDSRRDGRYFISNG--KDQTTKLW 258
+ + S D+T KLW
Sbjct: 297 DVVISTACHPTENIIASAALENDKTIKLW 325
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 321 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 380
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 90 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 149
Query: 381 RWEI 384
W++
Sbjct: 150 IWDV 153
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 88/342 (25%), Positives = 138/342 (40%), Gaps = 69/342 (20%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 101
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
LV AS + I DV S + KG +F F+ +
Sbjct: 102 NLLVSASDDKTLKIWDVSS------GKCLKTLKG---------HSNYVFCCNFNPQSNLI 146
Query: 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217
V+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 147 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT--- 202
Query: 218 ISKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 203 -----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---------- 247
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 248 ------------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGS 280
Query: 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 374
DN VYI++L + V KL H V HP ++ S++
Sbjct: 281 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 322
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 178 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 41 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 95
Query: 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 297
D +S D+T K+WD+
Sbjct: 96 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 121
Query: 298 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 357
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 122 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 175
Query: 358 VRDCCWHPIYPMLISSSWD 376
V ++ +++SSS+D
Sbjct: 176 VSAVHFNRDGSLIVSSSYD 194
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 12/149 (8%)
Query: 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK 175
SS+ + L + + G D+D + VKFS +G+ ++AA DN + ++D K
Sbjct: 190 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 249
Query: 176 CSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWDRRC--FISKGRANGVLMGHL 231
C HK++ + F+ G I SGS+D+L +W+ + + K L GH
Sbjct: 250 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK------LQGHT 303
Query: 232 EGITFIDSRRDGRYFISNG--KDQTTKLW 258
+ + S D+T KLW
Sbjct: 304 DVVISTACHPTENIIASAALENDKTIKLW 332
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 40/159 (25%)
Query: 226 VLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEY 285
L GH + ++ + +G + S+ D+ K+W YD +
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA---------------YDGKFE---- 82
Query: 286 PSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 345
T GH + + + +S+ + + S D ++ I+D+ SG
Sbjct: 83 ---------------KTISGHKLGISDV------AWSSDSNLLVSASDDKTLKIWDVSSG 121
Query: 346 AQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384
+ L H+ V C ++P +++S S+D ++ W++
Sbjct: 122 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 88/342 (25%), Positives = 138/342 (40%), Gaps = 69/342 (20%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 76
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
LV AS + I DV S + KG +F F+ +
Sbjct: 77 NLLVSASDDKTLKIWDVSS------GKCLKTLKG---------HSNYVFCCNFNPQSNLI 121
Query: 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217
V+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 122 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT--- 177
Query: 218 ISKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 178 -----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---------- 222
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 223 ------------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGS 255
Query: 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 374
DN VYI++L + V KL H V HP ++ S++
Sbjct: 256 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 297
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 178 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 16 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 70
Query: 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 297
D +S D+T K+WD+
Sbjct: 71 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 96
Query: 298 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 357
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 97 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 150
Query: 358 VRDCCWHPIYPMLISSSWD 376
V ++ +++SSS+D
Sbjct: 151 VSAVHFNRDGSLIVSSSYD 169
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 12/149 (8%)
Query: 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK 175
SS+ + L + + G D+D + VKFS +G+ ++AA DN + ++D K
Sbjct: 165 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 224
Query: 176 CSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWDRRC--FISKGRANGVLMGHL 231
C HK++ + F+ G I SGS+D+L +W+ + + K L GH
Sbjct: 225 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK------LQGHT 278
Query: 232 EGITFIDSRRDGRYFISNG--KDQTTKLW 258
+ + S D+T KLW
Sbjct: 279 DVVISTACHPTENIIASAALENDKTIKLW 307
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 321 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 380
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 72 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 131
Query: 381 RWEI 384
W++
Sbjct: 132 IWDV 135
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 88/342 (25%), Positives = 138/342 (40%), Gaps = 69/342 (20%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 99
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
LV AS + I DV S + KG +F F+ +
Sbjct: 100 NLLVSASDDKTLKIWDVSS------GKCLKTLKG---------HSNYVFCCNFNPQSNLI 144
Query: 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217
V+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT--- 200
Query: 218 ISKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 201 -----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---------- 245
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 246 ------------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGS 278
Query: 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 374
DN VYI++L + V KL H V HP ++ S++
Sbjct: 279 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 320
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 178 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 39 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 93
Query: 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 297
D +S D+T K+WD+
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 119
Query: 298 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 357
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 120 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 173
Query: 358 VRDCCWHPIYPMLISSSWD 376
V ++ +++SSS+D
Sbjct: 174 VSAVHFNRDGSLIVSSSYD 192
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 12/149 (8%)
Query: 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK 175
SS+ + L + + G D+D + VKFS +G+ ++AA DN + ++D K
Sbjct: 188 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 247
Query: 176 CSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWDRRC--FISKGRANGVLMGHL 231
C HK++ + F+ G I SGS+D+L +W+ + + K L GH
Sbjct: 248 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK------LQGHT 301
Query: 232 EGITFIDSRRDGRYFISNG--KDQTTKLW 258
+ + S D+T KLW
Sbjct: 302 DVVISTACHPTENIIASAALENDKTIKLW 330
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 40/159 (25%)
Query: 226 VLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEY 285
L GH + ++ + +G + S+ D+ K+W YD +
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA---------------YDGKFE---- 80
Query: 286 PSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 345
T GH + + + +S+ + + S D ++ I+D+ SG
Sbjct: 81 ---------------KTISGHKLGISDV------AWSSDSNLLVSASDDKTLKIWDVSSG 119
Query: 346 AQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384
+ L H+ V C ++P +++S S+D ++ W++
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 88/342 (25%), Positives = 138/342 (40%), Gaps = 69/342 (20%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 83
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
LV AS + I DV S + KG +F F+ +
Sbjct: 84 NLLVSASDDKTLKIWDVSS------GKCLKTLKG---------HSNYVFCCNFNPQSNLI 128
Query: 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217
V+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT--- 184
Query: 218 ISKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 185 -----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---------- 229
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 230 ------------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGS 262
Query: 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 374
DN VYI++L + V KL H V HP ++ S++
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 178 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 23 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 77
Query: 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 297
D +S D+T K+WD+
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 103
Query: 298 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 357
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 104 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 157
Query: 358 VRDCCWHPIYPMLISSSWD 376
V ++ +++SSS+D
Sbjct: 158 VSAVHFNRDGSLIVSSSYD 176
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 12/149 (8%)
Query: 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK 175
SS+ + L + + G D+D + VKFS +G+ ++AA DN + ++D K
Sbjct: 172 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 231
Query: 176 CSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWDRRC--FISKGRANGVLMGHL 231
C HK++ + F+ G I SGS+D+L +W+ + + K L GH
Sbjct: 232 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK------LQGHT 285
Query: 232 EGITFIDSRRDGRYFISNG--KDQTTKLW 258
+ + S D+T KLW
Sbjct: 286 DVVISTACHPTENIIASAALENDKTIKLW 314
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 321 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 380
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 381 RWEI 384
W++
Sbjct: 139 IWDV 142
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 88/342 (25%), Positives = 138/342 (40%), Gaps = 69/342 (20%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 78
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
LV AS + I DV S + KG +F F+ +
Sbjct: 79 NLLVSASDDKTLKIWDVSS------GKCLKTLKG---------HSNYVFCCNFNPQSNLI 123
Query: 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217
V+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 124 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT--- 179
Query: 218 ISKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 180 -----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---------- 224
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 225 ------------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGS 257
Query: 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 374
DN VYI++L + V KL H V HP ++ S++
Sbjct: 258 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 299
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 178 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 18 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 72
Query: 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 297
D +S D+T K+WD+
Sbjct: 73 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 98
Query: 298 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 357
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 99 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 152
Query: 358 VRDCCWHPIYPMLISSSWD 376
V ++ +++SSS+D
Sbjct: 153 VSAVHFNRDGSLIVSSSYD 171
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 12/149 (8%)
Query: 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK 175
SS+ + L + + G D+D + VKFS +G+ ++AA DN + ++D K
Sbjct: 167 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 226
Query: 176 CSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWDRRC--FISKGRANGVLMGHL 231
C HK++ + F+ G I SGS+D+L +W+ + + K L GH
Sbjct: 227 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK------LQGHT 280
Query: 232 EGITFIDSRRDGRYFISNG--KDQTTKLW 258
+ + S D+T KLW
Sbjct: 281 DVVISTACHPTENIIASAALENDKTIKLW 309
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 321 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 380
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 74 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 133
Query: 381 RWEI 384
W++
Sbjct: 134 IWDV 137
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 88/342 (25%), Positives = 138/342 (40%), Gaps = 69/342 (20%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 77
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
LV AS + I DV S + KG +F F+ +
Sbjct: 78 NLLVSASDDKTLKIWDVSS------GKCLKTLKG---------HSNYVFCCNFNPQSNLI 122
Query: 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217
V+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT--- 178
Query: 218 ISKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 179 -----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---------- 223
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 224 ------------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGS 256
Query: 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 374
DN VYI++L + V KL H V HP ++ S++
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 178 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 17 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 71
Query: 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 297
D +S D+T K+WD+
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 97
Query: 298 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 357
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 98 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151
Query: 358 VRDCCWHPIYPMLISSSWD 376
V ++ +++SSS+D
Sbjct: 152 VSAVHFNRDGSLIVSSSYD 170
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 12/149 (8%)
Query: 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK 175
SS+ + L + + G D+D + VKFS +G+ ++AA DN + ++D K
Sbjct: 166 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 225
Query: 176 CSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWDRRC--FISKGRANGVLMGHL 231
C HK++ + F+ G I SGS+D+L +W+ + + K L GH
Sbjct: 226 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK------LQGHT 279
Query: 232 EGITFIDSRRDGRYFISNG--KDQTTKLW 258
+ + S D+T KLW
Sbjct: 280 DVVISTACHPTENIIASAALENDKTIKLW 308
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 321 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 380
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132
Query: 381 RWEI 384
W++
Sbjct: 133 IWDV 136
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 88/342 (25%), Positives = 138/342 (40%), Gaps = 69/342 (20%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 82
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
LV AS + I DV S + KG +F F+ +
Sbjct: 83 NLLVSASDDKTLKIWDVSS------GKCLKTLKG---------HSNYVFCCNFNPQSNLI 127
Query: 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217
V+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 128 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT--- 183
Query: 218 ISKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 184 -----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---------- 228
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 229 ------------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGS 261
Query: 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 374
DN VYI++L + V KL H V HP ++ S++
Sbjct: 262 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 303
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 178 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 22 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 76
Query: 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 297
D +S D+T K+WD+
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 102
Query: 298 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 357
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 103 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 156
Query: 358 VRDCCWHPIYPMLISSSWD 376
V ++ +++SSS+D
Sbjct: 157 VSAVHFNRDGSLIVSSSYD 175
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 12/149 (8%)
Query: 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK 175
SS+ + L + + G D+D + VKFS +G+ ++AA DN + ++D K
Sbjct: 171 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 230
Query: 176 CSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWDRRC--FISKGRANGVLMGHL 231
C HK++ + F+ G I SGS+D+L +W+ + + K L GH
Sbjct: 231 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK------LQGHT 284
Query: 232 EGITFIDSRRDGRYFISNG--KDQTTKLW 258
+ + S D+T KLW
Sbjct: 285 DVVISTACHPTENIIASAALENDKTIKLW 313
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 321 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 380
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 78 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 137
Query: 381 RWEI 384
W++
Sbjct: 138 IWDV 141
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 88/342 (25%), Positives = 138/342 (40%), Gaps = 69/342 (20%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 83
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
LV AS + I DV S + KG +F F+ +
Sbjct: 84 NLLVSASDDKTLKIWDVSS------GKCLKTLKG---------HSNYVFCCNFNPQSNLI 128
Query: 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217
V+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT--- 184
Query: 218 ISKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 185 -----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---------- 229
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 230 ------------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGS 262
Query: 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 374
DN VYI++L + V KL H V HP ++ S++
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 178 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 23 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 77
Query: 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 297
D +S D+T K+WD+
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 103
Query: 298 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 357
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 104 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 157
Query: 358 VRDCCWHPIYPMLISSSWD 376
V ++ +++SSS+D
Sbjct: 158 VSAVHFNRDGSLIVSSSYD 176
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 12/149 (8%)
Query: 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK 175
SS+ + L + + G D+D + VKFS +G+ ++AA DN + ++D K
Sbjct: 172 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 231
Query: 176 CSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWDRRC--FISKGRANGVLMGHL 231
C HK++ + F+ G I SGS+D+L +W+ + + K L GH
Sbjct: 232 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK------LQGHT 285
Query: 232 EGITFIDSRRDGRYFISNG--KDQTTKLW 258
+ + S D+T KLW
Sbjct: 286 DVVISTACHPTENIIASAALENDKTIKLW 314
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 321 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 380
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 381 RWEI 384
W++
Sbjct: 139 IWDV 142
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 88/342 (25%), Positives = 138/342 (40%), Gaps = 69/342 (20%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 73
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
LV AS + I DV S + KG +F F+ +
Sbjct: 74 NLLVSASDDKTLKIWDVSS------GKCLKTLKG---------HSNYVFCCNFNPQSNLI 118
Query: 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217
V+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 119 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT--- 174
Query: 218 ISKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 175 -----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---------- 219
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 220 ------------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGS 252
Query: 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 374
DN VYI++L + V KL H V HP ++ S++
Sbjct: 253 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 294
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 178 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 13 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 67
Query: 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 297
D +S D+T K+WD+
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 93
Query: 298 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 357
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 94 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 147
Query: 358 VRDCCWHPIYPMLISSSWD 376
V ++ +++SSS+D
Sbjct: 148 VSAVHFNRDGSLIVSSSYD 166
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 8/147 (5%)
Query: 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK 175
SS+ + L + + G D+D + VKFS +G+ ++AA DN + ++D K
Sbjct: 162 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 221
Query: 176 CSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEG 233
C HK++ + F+ G I SGS+D+L +W+ + L GH +
Sbjct: 222 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN----LQTKEIVQKLQGHTDV 277
Query: 234 ITFIDSRRDGRYFISNG--KDQTTKLW 258
+ S D+T KLW
Sbjct: 278 VISTACHPTENIIASAALENDKTIKLW 304
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 321 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 380
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 69 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 128
Query: 381 RWEI 384
W++
Sbjct: 129 IWDV 132
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 88/342 (25%), Positives = 138/342 (40%), Gaps = 69/342 (20%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 77
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
LV AS + I DV S + KG +F F+ +
Sbjct: 78 NLLVSASDDKTLKIWDVSS------GKCLKTLKG---------HSNYVFCCNFNPQSNLI 122
Query: 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217
V+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT--- 178
Query: 218 ISKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 179 -----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---------- 223
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 224 ------------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGS 256
Query: 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 374
DN VYI++L + V KL H V HP ++ S++
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 178 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 17 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 71
Query: 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 297
D +S D+T K+WD+
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 97
Query: 298 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 357
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 98 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151
Query: 358 VRDCCWHPIYPMLISSSWD 376
V ++ +++SSS+D
Sbjct: 152 VSAVHFNRDGSLIVSSSYD 170
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 12/149 (8%)
Query: 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK 175
SS+ + L + + G D+D + VKFS +G+ ++AA DN + ++D K
Sbjct: 166 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 225
Query: 176 CSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWDRRC--FISKGRANGVLMGHL 231
C HK++ + F+ G I SGS+D+L +W+ + + K L GH
Sbjct: 226 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK------LQGHT 279
Query: 232 EGITFIDSRRDGRYFISNG--KDQTTKLW 258
+ + S D+T KLW
Sbjct: 280 DVVISTACHPTENIIASAALENDKTIKLW 308
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 321 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 380
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132
Query: 381 RWEI 384
W++
Sbjct: 133 IWDV 136
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/342 (25%), Positives = 138/342 (40%), Gaps = 69/342 (20%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 80
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
LV AS + I DV S + KG +F F+ +
Sbjct: 81 NLLVSASDDKTLKIWDVSS------GKCLKTLKG---------HSNYVFCCNFNPQSNLI 125
Query: 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217
V+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT--- 181
Query: 218 ISKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 182 -----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---------- 226
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 227 ------------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGS 259
Query: 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 374
DN VYI++L + V KL H V HP ++ S++
Sbjct: 260 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 178 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 20 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 74
Query: 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 297
D +S D+T K+WD+
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 100
Query: 298 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 357
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 101 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154
Query: 358 VRDCCWHPIYPMLISSSWD 376
V ++ +++SSS+D
Sbjct: 155 VSAVHFNRDGSLIVSSSYD 173
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 321 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 380
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 381 RWEI 384
W++
Sbjct: 136 IWDV 139
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/342 (25%), Positives = 138/342 (40%), Gaps = 69/342 (20%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 80
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
LV AS + I DV S + KG +F F+ +
Sbjct: 81 NLLVSASDDKTLKIWDVSS------GKCLKTLKG---------HSNYVFCCNFNPQSNLI 125
Query: 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217
V+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT--- 181
Query: 218 ISKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 182 -----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---------- 226
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 227 ------------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGS 259
Query: 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 374
DN VYI++L + V KL H V HP ++ S++
Sbjct: 260 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 178 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 20 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 74
Query: 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 297
D +S D+T K+WD+
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 100
Query: 298 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 357
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 101 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154
Query: 358 VRDCCWHPIYPMLISSSWD 376
V ++ +++SSS+D
Sbjct: 155 VSAVHFNRDGSLIVSSSYD 173
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 321 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 380
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 381 RWEI 384
W++
Sbjct: 136 IWDV 139
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 137/342 (40%), Gaps = 69/342 (20%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 80
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
LV AS + I DV S + KG +F F+ +
Sbjct: 81 NLLVSASDDKTLKIWDVSS------GKCLKTLKG---------HSNYVFCCNFNPQSNLI 125
Query: 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217
V+ D + ++D++ C +PAH V+ V F + G LI S S D LC++WD
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT--- 181
Query: 218 ISKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 182 -----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---------- 226
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 227 ------------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGS 259
Query: 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 374
DN VYI++L + V KL H V HP ++ S++
Sbjct: 260 EDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 178 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 20 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 74
Query: 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 297
D +S D+T K+WD+
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 100
Query: 298 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 357
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 101 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP 154
Query: 358 VRDCCWHPIYPMLISSSWD 376
V ++ +++SSS+D
Sbjct: 155 VSAVHFNRDGSLIVSSSYD 173
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 321 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 380
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 381 RWEI-PGIGEAPLP 393
W++ G+ LP
Sbjct: 136 IWDVKTGMCLKTLP 149
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 136/342 (39%), Gaps = 69/342 (20%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 80
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
LV AS + I DV S + KG +F F+ +
Sbjct: 81 NLLVSASDDKTLKIWDVSS------GKCLKTLKG---------HSNYVFCCNFNPQSNLI 125
Query: 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217
V+ D + ++D++ C +PAH V+ V F + G LI S S D LC++WD
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT--- 181
Query: 218 ISKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
A+G + L ++F+ +G+Y ++ D KLWD K
Sbjct: 182 -----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSK---------- 226
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 227 ------------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGS 259
Query: 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 374
DN VYI++L + V KL H V HP ++ S++
Sbjct: 260 EDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 178 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 20 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 74
Query: 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 297
D +S D+T K+WD+
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 100
Query: 298 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 357
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 101 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP 154
Query: 358 VRDCCWHPIYPMLISSSWD 376
V ++ +++SSS+D
Sbjct: 155 VSAVHFNRDGSLIVSSSYD 173
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 321 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 380
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 381 RWEIP-GIGEAPLP 393
W++ G+ LP
Sbjct: 136 IWDVKTGMCLKTLP 149
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 88/381 (23%), Positives = 166/381 (43%), Gaps = 51/381 (13%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G +S V+ FS DG +AS + +K++N +N ++ + + + ++ + SPD
Sbjct: 55 GHSSSVWGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSS--SVRGVAFSPDG 110
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGD------EDEF-------- 143
+ + AS V + + ++L + G+ FS DG +D+
Sbjct: 111 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 170
Query: 144 -----------GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192
++ V FS DGQ + +A D + +++ + + + H S V V F
Sbjct: 171 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAF 229
Query: 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD 252
+ + G I S SDD K+W+R G+ L GH + + R DG+ S D
Sbjct: 230 SPD-GQTIASASDDKTVKLWNR-----NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDD 283
Query: 253 QTTKLWD-----IRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK--HPHDQSLATYKG 305
+T KLW+ ++ ++ +++ + + D + + S + +K + + Q L T G
Sbjct: 284 KTVKLWNRNGQLLQTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLWNRNGQHLQTLTG 342
Query: 306 HSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHP 365
HS ++ FSP+ T I + S D +V +++ +G + L H++ VR + P
Sbjct: 343 HS--SSVWGVAFSPDGQT----IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP 395
Query: 366 IYPMLISSSWDCNIVRWEIPG 386
+ S+S D + W G
Sbjct: 396 DGQTIASASDDKTVKLWNRNG 416
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 136/312 (43%), Gaps = 43/312 (13%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G +S V+ FS DG +AS + +K++N + +Q + W + + SPD
Sbjct: 301 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGV---AFSPDG 356
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
+ + AS V + + ++L + +G V FS DGQ +
Sbjct: 357 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRG----------------VAFSPDGQTI 400
Query: 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA--DETGHLIFSGSDDSLCKVWDRR 215
+A D + +++ + + + H S V V F+ D+T I S SDD K+W+R
Sbjct: 401 ASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQT---IASASDDKTVKLWNR- 455
Query: 216 CFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLW--DIRKMSSNTTDNSRL 273
G+ L GH + + DG+ S D+T KLW + + + + T +S +
Sbjct: 456 ----NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 511
Query: 274 RD--YDWDYRWMEYPSYARRLK--HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIY 329
R + D + + S + +K + + Q L T GHS ++ FSP+ T I
Sbjct: 512 RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS--SSVWGVAFSPDGQT----IA 565
Query: 330 TGSSDNSVYIYD 341
+ SSD +V +++
Sbjct: 566 SASSDKTVKLWN 577
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 97/214 (45%), Gaps = 19/214 (8%)
Query: 179 RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 238
R+ AH S V V F+ + G I S SDD K+W+R G+ L GH + +
Sbjct: 11 RLEAHSSSVRGVAFSPD-GQTIASASDDKTVKLWNR-----NGQLLQTLTGHSSSVWGVA 64
Query: 239 SRRDGRYFISNGKDQTTKLW--DIRKMSSNTTDNSRLRD--YDWDYRWMEYPSYARRLK- 293
DG+ S D+T KLW + + + + T +S +R + D + + S + +K
Sbjct: 65 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 124
Query: 294 -HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD 352
+ + Q L T GHS ++ FSP+ T I + S D +V +++ +G + L
Sbjct: 125 WNRNGQLLQTLTGHS--SSVWGVAFSPDGQT----IASASDDKTVKLWNR-NGQLLQTLT 177
Query: 353 FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386
H++ V + P + S+S D + W G
Sbjct: 178 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 211
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/355 (23%), Positives = 143/355 (40%), Gaps = 47/355 (13%)
Query: 47 QFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITD--TSLSPDQRFLVYAS 104
+FSNDG + ++ +VY V + + + A + TS SP + S
Sbjct: 71 KFSNDGEYLATGCNKTT-QVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI-RS 128
Query: 105 ICAIVNIVDVGSSARESLANVTEI-HKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD 163
+C + + + A + L + +I ++ + G E + I+S+ + G +LV+ D
Sbjct: 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD--IYSLDYFPSGDKLVSGSGD 186
Query: 164 NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR- 222
+ ++DL+ +CSL + + + V TV + G I +GS D +VWD R
Sbjct: 187 RTVRIWDLRTGQCSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245
Query: 223 --ANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDY 280
N GH + + + RDG+ +S D++ KLW+++ ++N +D+
Sbjct: 246 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN-ANNKSDS---------- 294
Query: 281 RWMEYPSYARRLKHPHDQSL-ATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYI 339
K P+ + TY GH S + +YI +GS D V
Sbjct: 295 ------------KTPNSGTCEVTYIGHKDF------VLSVATTQNDEYILSGSKDRGVLF 336
Query: 340 YDLVSGAQVAKLDFHN------APVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388
+D SG + L H A P Y + + S DC W+ I
Sbjct: 337 WDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIA 391
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 31/153 (20%)
Query: 127 EIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVY-------------DLQA 173
E+HK LD ++ + VKFS DG E +A G + VY D A
Sbjct: 56 ELHKSLDHTS-------VVCCVKFSNDG-EYLATGCNKTTQVYRVSDGSLVARLSDDSAA 107
Query: 174 NKCSLRI-----PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM 228
NK + P+ + +VCF+ + G + +G++D L ++WD I + +L
Sbjct: 108 NKDPENLNTSSSPSSDLYIRSVCFSPD-GKFLATGAEDRLIRIWD----IENRKIVMILQ 162
Query: 229 GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261
GH + I +D G +S D+T ++WD+R
Sbjct: 163 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 195
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKC--SLRIPAHKSDVNTVCFADET-GHLIF 201
+ SV FS D +++V+ G DN + V++++ +C +L AH V+ V F+ +I
Sbjct: 112 VLSVAFSPDNRQIVSGGRDNALRVWNVKG-ECMHTLSRGAHTDWVSCVRFSPSLDAPVIV 170
Query: 202 SGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261
SG D+L KVWD ++ GR L GH +T + DG S+ KD +LWD+
Sbjct: 171 SGGWDNLVKVWD----LATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLT 226
Query: 262 K 262
K
Sbjct: 227 K 227
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 24/191 (12%)
Query: 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI--ETKALRWTITDTS 92
+++G ++ V SN+G+F V+AS + +++++N+ +N + Q TK + +
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNL-QNGQCQYKFLGHTK----DVLSVA 116
Query: 93 LSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST 152
SPD R +V + + +V +L S D S
Sbjct: 117 FSPDNRQIVSGGRDNALRVWNVKGECMHTL------------SRGAHTDWVSCVRFSPSL 164
Query: 153 DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVW 212
D +V+ G DN + V+DL + + H + V +V + + G L S D + ++W
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPD-GSLCASSDKDGVARLW 223
Query: 213 DRRCFISKGRA 223
D ++KG A
Sbjct: 224 D----LTKGEA 230
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 85/227 (37%), Gaps = 50/227 (22%)
Query: 170 DLQANKCSLRIP-----AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRAN 224
D +++CS +P H + V+ V ++ G+ S S D ++W+ + G+
Sbjct: 48 DRHSSECSYGLPDRRLEGHSAFVSDVALSNN-GNFAVSASWDHSLRLWN----LQNGQCQ 102
Query: 225 GVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME 284
+GH + + + D R +S G+D ++W+++ +T SR DW
Sbjct: 103 YKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTL--SRGAHTDW------ 154
Query: 285 YPSYARRLKHPHDQSLATYKGHSVLRTLIRCY-FSPEYSTAQKYIYTGSSDNSVYIYDLV 343
+ C FSP S I +G DN V ++DL
Sbjct: 155 ----------------------------VSCVRFSP--SLDAPVIVSGGWDNLVKVWDLA 184
Query: 344 SGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390
+G V L H V P + SS D W++ GEA
Sbjct: 185 TGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTK-GEA 230
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 116/255 (45%), Gaps = 32/255 (12%)
Query: 140 EDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA-DETGH 198
E G++ +++ D Q++V+ DN I ++D +C + H V +C DE
Sbjct: 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDE--R 184
Query: 199 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLW 258
+I +GS DS +VWD ++ G L+ H E + + R + ++ KD++ +W
Sbjct: 185 VIITGSSDSTVRVWD----VNTGEMLNTLIHHCEAVLHL--RFNNGMMVTCSKDRSIAVW 238
Query: 259 DIRKMSSNTT------DNSRLRDYDWDYRWMEYPSYARRLKHPHDQS---LATYKGHSVL 309
D+ + T + + D+D +++ S R +K + + + T GH
Sbjct: 239 DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK-- 296
Query: 310 RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPM 369
R +Y + + +GSSDN++ ++D+ GA + L+ H VR C
Sbjct: 297 ----RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKR 348
Query: 370 LISSSWDCNIVRWEI 384
++S ++D I W++
Sbjct: 349 IVSGAYDGKIKVWDL 363
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 27/230 (11%)
Query: 157 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRC 216
++ D I VYD K L++ H V + +A G ++ SGS D +VWD
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAH--GGILVSGSTDRTVRVWD--- 189
Query: 217 FISKGRANGVLMGHLEGITFID--SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLR 274
I KG V GH + +D ++ +Y ++ +D T +W + K SS D+
Sbjct: 190 -IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS-VPDHGEEH 247
Query: 275 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD 334
DY + E Y + H S+ T GH + + +GS D
Sbjct: 248 DYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNI------------------VVSGSYD 289
Query: 335 NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384
N++ ++D+ + L H + + IS+S D I W++
Sbjct: 290 NTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 11/130 (8%)
Query: 151 STDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCK 210
S G +V+ DN + V+D+ KC + H + + + E I S S D+ +
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCI-SASXDTTIR 335
Query: 211 VWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI----RKMSSN 266
+WD + G L GH + + R ++ +S D + + WD RK S +
Sbjct: 336 IWD----LENGELXYTLQGHTALVGLL--RLSDKFLVSAAADGSIRGWDANDYSRKFSYH 389
Query: 267 TTDNSRLRDY 276
T+ S + +
Sbjct: 390 HTNLSAITTF 399
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 87/230 (37%), Gaps = 74/230 (32%)
Query: 180 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD--RRCFISKGRANGVLMGHLEGITFI 237
+ H + V T C E ++I +G+DD +V+D + F+ + L GH G+ +
Sbjct: 117 LRGHXTSVIT-CLQFEDNYVI-TGADDKXIRVYDSINKKFLLQ------LSGHDGGVWAL 168
Query: 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 297
G +S D+T ++WDI+K
Sbjct: 169 KYAHGG-ILVSGSTDRTVRVWDIKKGCCT------------------------------- 196
Query: 298 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ---------- 347
++GH+ + +RC EY KYI TGS DN+++++ L +
Sbjct: 197 ---HVFEGHN---STVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 348 -------------VAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384
V L H A VR H +++S S+D ++ W++
Sbjct: 250 PLVFHTPEENPYFVGVLRGHXASVRTVSGHG--NIVVSGSYDNTLIVWDV 297
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 89/226 (39%), Gaps = 39/226 (17%)
Query: 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD-ETGHLIFS 202
G++++K++ G LV+ +D + V+D++ C+ H S V + + + I +
Sbjct: 164 GVWALKYAHGGI-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 222
Query: 203 GSDDSLCKVW---------------DRRCFISKGRAN----GVLMGHLEGITFIDSRRDG 243
GS D+ VW D N GVL GH + + G
Sbjct: 223 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGH--G 280
Query: 244 RYFISNGKDQTTKLWDIRK-----MSSNTTDNSRLRDYDWDYRWMEYPSYARRLK---HP 295
+S D T +WD+ + + S TD YD + + S ++
Sbjct: 281 NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLE 340
Query: 296 HDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYD 341
+ + T +GH+ L L+R + K++ + ++D S+ +D
Sbjct: 341 NGELXYTLQGHTALVGLLRL--------SDKFLVSAAADGSIRGWD 378
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 328 IYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVR--DCCWHPIYPMLISSSWDCNIVRWEIP 385
+ +GS+D +V ++D+ G + HN+ VR D + +++ S D + W++P
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Query: 386 GIGEAP 391
P
Sbjct: 236 KESSVP 241
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 310 RTLIRCYFSPEYSTAQ---KYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPI 366
RT +R + + + Q Y+ TG+ D + +YD ++ + +L H+ V W
Sbjct: 114 RTTLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGV----WALK 169
Query: 367 YP---MLISSSWDCNIVRWEI 384
Y +L+S S D + W+I
Sbjct: 170 YAHGGILVSGSTDRTVRVWDI 190
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 110/253 (43%), Gaps = 56/253 (22%)
Query: 157 LVAAGSDN-FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215
LVA G+ + + DL++ CS + H+ ++ V ++ +++ + S DS K+WD R
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 216 ----CFISKGRANG-----------VLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 260
C I+ + NG G + G+ F DG + ++ G D +LW+
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS---DGLHLLTVGTDNRMRLWN- 273
Query: 261 RKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 320
S+ +N+ + +Y + + + KG L+ + C S E
Sbjct: 274 ----SSNGENTLV-------------NYGKVCNN-------SKKG---LKFTVSCGCSSE 306
Query: 321 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 380
+ ++ GS ++ +Y + SG Q+ L H V C + + L S S DCNI+
Sbjct: 307 FV----FVPYGS---TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNIL 359
Query: 381 RWEIPGIGEAPLP 393
W +P + E P+P
Sbjct: 360 AW-VPSLYE-PVP 370
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 22/176 (12%)
Query: 230 HLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL-----RDYDWDYRW- 282
H GI +D +GRY +S G D L+D+ S + + RD+ +R+
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 283 ----MEYP---------SYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIY 329
YP S+ + LK +L T + T+ + SP ST +
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSP-VSTKHCLVA 160
Query: 330 TGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEI 384
G+ V + DL SG+ L H + W P Y +L ++S D + W++
Sbjct: 161 VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 104/227 (45%), Gaps = 23/227 (10%)
Query: 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSL 93
W ++G V + S+ ++S +++I++++++ +I+ WT+ +
Sbjct: 74 WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTL---AF 130
Query: 94 SPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD 153
SPD ++L + VNI V S +E +S D +F I S+ +S D
Sbjct: 131 SPDSQYLATGTHVGKVNIFGVESGKKE-------------YSLD-TRGKF-ILSIAYSPD 175
Query: 154 GQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD 213
G+ L + D I ++D+ K + H + ++ F+ ++ L+ + SDD K++D
Sbjct: 176 GKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYD 234
Query: 214 RRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 260
+ G L GH + + D +F+S+ D++ K+WD+
Sbjct: 235 ----VQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV 277
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 93/227 (40%), Gaps = 29/227 (12%)
Query: 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP 95
+D +T FS D + + + ++ V+ K + ++T+ I + SP
Sbjct: 118 IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG-KKEYSLDTRGKF--ILSIAYSP 174
Query: 96 DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ 155
D ++L +I I+NI D+ A L + E H I S+ FS D Q
Sbjct: 175 DGKYLASGAIDGIINIFDI---ATGKLLHTLEGHA------------MPIRSLTFSPDSQ 219
Query: 156 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD-- 213
LV A D +I +YD+Q + + H S V V F + H + S S D KVWD
Sbjct: 220 LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSS-SSDKSVKVWDVG 278
Query: 214 -RRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 259
R C + H + + + +G +S G DQ ++D
Sbjct: 279 TRTCVHT-------FFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 85/196 (43%), Gaps = 12/196 (6%)
Query: 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT 254
E + +GS D L KVW R + L GH G+ +D S+ D
Sbjct: 46 ENSETVVTGSLDDLVKVWKWRD--ERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103
Query: 255 TKLWD------IRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV 308
+LWD I+ + + D L + D +++ ++ ++ + + + K
Sbjct: 104 IRLWDLENGKQIKSIDAGPVDAWTLA-FSPDSQYLATGTHVGKV---NIFGVESGKKEYS 159
Query: 309 LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP 368
L T + S YS KY+ +G+ D + I+D+ +G + L+ H P+R + P
Sbjct: 160 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 219
Query: 369 MLISSSWDCNIVRWEI 384
+L+++S D I +++
Sbjct: 220 LLVTASDDGYIKIYDV 235
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/116 (18%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 146 FSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD 205
+++ FS D Q L + ++ +++ K + + ++ ++ + G + SG+
Sbjct: 126 WTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPD-GKYLASGAI 184
Query: 206 DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261
D + ++D I+ G+ L GH I + D + ++ D K++D++
Sbjct: 185 DGIINIFD----IATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 236
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 92/228 (40%), Gaps = 33/228 (14%)
Query: 157 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRC 216
++ D I VYD K L++ H V + +A G ++ SGS D +VWD
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GGILVSGSTDRTVRVWD--- 189
Query: 217 FISKGRANGVLMGHLEGITFID--SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLR 274
I KG V GH + +D ++ +Y ++ +D T +W + K SS D+
Sbjct: 190 -IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS-VPDHGEEH 247
Query: 275 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL-------RTLI-------RCYF--- 317
DY + E Y + H S+ T GH + TLI +C +
Sbjct: 248 DYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 307
Query: 318 -------SPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPV 358
S Y +K + S D ++ I+DL +G + L H A V
Sbjct: 308 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV 355
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 91/226 (40%), Gaps = 39/226 (17%)
Query: 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD-ETGHLIFS 202
G++++K++ G LV+ +D + V+D++ C+ H S V + + + I +
Sbjct: 164 GVWALKYAHGGI-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 222
Query: 203 GSDDSLCKVW---------------DRRCFISKGRAN----GVLMGHLEGITFIDSRRDG 243
GS D+ VW D N GVL GH+ + + G
Sbjct: 223 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH--G 280
Query: 244 RYFISNGKDQTTKLWDIRKMS-----SNTTDNSRLRDYDWDYRWMEYPSYARRLK---HP 295
+S D T +WD+ +M S TD YD + + S ++
Sbjct: 281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 340
Query: 296 HDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYD 341
+ + + T +GH+ L L+R + K++ + ++D S+ +D
Sbjct: 341 NGELMYTLQGHTALVGLLRL--------SDKFLVSAAADGSIRGWD 378
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 15/132 (11%)
Query: 151 STDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCK 210
S G +V+ DN + V+D+ KC + H + + + E I S S D+ +
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI-SASMDTTIR 335
Query: 211 VWDRRCFISKGRANGVLMGHLEGITFIDS--RRDGRYFISNGKDQTTKLWDI----RKMS 264
+WD NG LM L+G T + R ++ +S D + + WD RK S
Sbjct: 336 IWDLE--------NGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFS 387
Query: 265 SNTTDNSRLRDY 276
+ T+ S + +
Sbjct: 388 YHHTNLSAITTF 399
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 88/230 (38%), Gaps = 74/230 (32%)
Query: 180 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD--RRCFISKGRANGVLMGHLEGITFI 237
+ H + V T C E ++I +G+DD + +V+D + F+ + L GH G+ +
Sbjct: 117 LRGHMTSVIT-CLQFEDNYVI-TGADDKMIRVYDSINKKFLLQ------LSGHDGGVWAL 168
Query: 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 297
G +S D+T ++WDI+K
Sbjct: 169 KYAHGG-ILVSGSTDRTVRVWDIKKGCCT------------------------------- 196
Query: 298 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ---------- 347
++GH+ + +RC EY KYI TGS DN+++++ L +
Sbjct: 197 ---HVFEGHN---STVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 348 -------------VAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384
V L H A VR H +++S S+D ++ W++
Sbjct: 250 PLVFHTPEENPYFVGVLRGHMASVRTVSGHG--NIVVSGSYDNTLIVWDV 297
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 328 IYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVR--DCCWHPIYPMLISSSWDCNIVRWEIP 385
+ +GS+D +V ++D+ G + HN+ VR D + +++ S D + W++P
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Query: 386 GIGEAP 391
P
Sbjct: 236 KESSVP 241
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 310 RTLIRCYFSPEYSTAQ---KYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPI 366
RT +R + + + Q Y+ TG+ D + +YD ++ + +L H+ V W
Sbjct: 114 RTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGV----WALK 169
Query: 367 YP---MLISSSWDCNIVRWEI 384
Y +L+S S D + W+I
Sbjct: 170 YAHGGILVSGSTDRTVRVWDI 190
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 9/144 (6%)
Query: 130 KGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNT 189
K LD A DE + FS+D + +D + ++D K H VN
Sbjct: 649 KLLDIKAHEDE----VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNC 704
Query: 190 VCFADETGHLIF-SGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFIS 248
F +++ HL+ +GS+D K+WD +++ + GH + D S
Sbjct: 705 CHFTNKSNHLLLATGSNDFFLKLWD----LNQKECRNTMFGHTNSVNHCRFSPDDELLAS 760
Query: 249 NGKDQTTKLWDIRKMSSNTTDNSR 272
D T +LWD+R + + N +
Sbjct: 761 CSADGTLRLWDVRSANERKSINVK 784
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 76/357 (21%), Positives = 135/357 (37%), Gaps = 33/357 (9%)
Query: 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWT--ITDTSLS 94
D + +V F+N + + A+ ++ + D N QK+ T + S
Sbjct: 696 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN---QKECRNTMFGHTNSVNHCRFS 752
Query: 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDED-EFGIFSVKFSTD 153
PD L S + + DV S+ NV S D ED E + +S D
Sbjct: 753 PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS---SEDPPEDVEVIVKCCSWSAD 809
Query: 154 GQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADET--GHLIFSGSDDSLCKV 211
G +++ A N + ++D+ + L H +T+ + D + HL ++
Sbjct: 810 GDKIIVAAK-NKVLLFDIHTS--GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 866
Query: 212 W--DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTD 269
W D R ++ R GHL + + DG F++ DQT ++W+ +K+ N+
Sbjct: 867 WNIDSRLKVADCR------GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNS-- 918
Query: 270 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV----LRTLIRCYFSPEYSTAQ 325
+ + + D + E + + + L K + + C SP
Sbjct: 919 -AIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL---- 973
Query: 326 KYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 382
+Y+ G D ++ I +L + + H VR + LISSS D I W
Sbjct: 974 EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1030
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 28/222 (12%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G +S + FS V A + ++++N+D K+ D L W + SPD
Sbjct: 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKV-ADCRGH-LSW-VHGVMFSPDG 894
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
+ AS + + + + S + + + E+E + +V + G +L
Sbjct: 895 SSFLTASDDQTIRVWETKKVCKNSAIVLKQ-----EIDVVFQENETMVLAVD-NIRGLQL 948
Query: 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217
+A + Y+ + Q + C L + V F DE G + + ++ + R F
Sbjct: 949 IAGKTGQIDYLPEAQVSCCCL-----SPHLEYVAFGDEDGAI-------KIIELPNNRVF 996
Query: 218 ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 259
++GV GH + + I DG+ IS+ +D ++W+
Sbjct: 997 -----SSGV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 297 DQSLATYKGHSVLRTL-IRCY----FSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 351
D++L +K + + L I+ + +S+ YI T S+D V I+D +G V
Sbjct: 636 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY 695
Query: 352 DFHNAPVRDCC 362
D H+ V +CC
Sbjct: 696 DEHSEQV-NCC 705
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 9/144 (6%)
Query: 130 KGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNT 189
K LD A DE + FS+D + +D + ++D K H VN
Sbjct: 656 KLLDIKAHEDE----VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNC 711
Query: 190 VCFADETGHLIF-SGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFIS 248
F +++ HL+ +GS+D K+WD +++ + GH + D S
Sbjct: 712 CHFTNKSNHLLLATGSNDFFLKLWD----LNQKECRNTMFGHTNSVNHCRFSPDDELLAS 767
Query: 249 NGKDQTTKLWDIRKMSSNTTDNSR 272
D T +LWD+R + + N +
Sbjct: 768 CSADGTLRLWDVRSANERKSINVK 791
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 76/357 (21%), Positives = 135/357 (37%), Gaps = 33/357 (9%)
Query: 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWT--ITDTSLS 94
D + +V F+N + + A+ ++ + D N QK+ T + S
Sbjct: 703 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN---QKECRNTMFGHTNSVNHCRFS 759
Query: 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDED-EFGIFSVKFSTD 153
PD L S + + DV S+ NV S D ED E + +S D
Sbjct: 760 PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS---SEDPPEDVEVIVKCCSWSAD 816
Query: 154 GQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADET--GHLIFSGSDDSLCKV 211
G +++ A N + ++D+ + L H +T+ + D + HL ++
Sbjct: 817 GDKIIVAAK-NKVLLFDIHTS--GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 873
Query: 212 W--DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTD 269
W D R ++ R GHL + + DG F++ DQT ++W+ +K+ N+
Sbjct: 874 WNIDSRLKVADCR------GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNS-- 925
Query: 270 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV----LRTLIRCYFSPEYSTAQ 325
+ + + D + E + + + L K + + C SP
Sbjct: 926 -AIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL---- 980
Query: 326 KYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 382
+Y+ G D ++ I +L + + H VR + LISSS D I W
Sbjct: 981 EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1037
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 28/222 (12%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G +S + FS V A + ++++N+D K+ D L W + SPD
Sbjct: 845 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKV-ADCRGH-LSW-VHGVMFSPDG 901
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
+ AS + + + + S + + + E+E + +V + G +L
Sbjct: 902 SSFLTASDDQTIRVWETKKVCKNSAIVLKQ-----EIDVVFQENETMVLAVD-NIRGLQL 955
Query: 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217
+A + Y+ + Q + C L + V F DE G + + ++ + R F
Sbjct: 956 IAGKTGQIDYLPEAQVSCCCL-----SPHLEYVAFGDEDGAI-------KIIELPNNRVF 1003
Query: 218 ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 259
++GV GH + + I DG+ IS+ +D ++W+
Sbjct: 1004 -----SSGV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1038
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 297 DQSLATYKGHSVLRTL-IRCY----FSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 351
D++L +K + + L I+ + +S+ YI T S+D V I+D +G V
Sbjct: 643 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY 702
Query: 352 DFHNAPVRDCC 362
D H+ V +CC
Sbjct: 703 DEHSEQV-NCC 712
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 93/232 (40%), Gaps = 19/232 (8%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G + V + +G V+AS++ IK++ V + ++ T W + P+Q
Sbjct: 190 GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK--TFTGHREWV---RMVRPNQ 244
Query: 98 RFLVYASICA--------IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVK 149
+ AS C+ +V + + RE V I + S + G + K
Sbjct: 245 DGTLIAS-CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK 303
Query: 150 FSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLC 209
G L++ D I ++D+ C + + H + V V F G I S +DD
Sbjct: 304 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF-HSGGKFILSCADDKTL 362
Query: 210 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261
+VWD + R L H +T +D + Y ++ DQT K+W+ R
Sbjct: 363 RVWDYK----NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/238 (19%), Positives = 95/238 (39%), Gaps = 29/238 (12%)
Query: 148 VKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDS 207
+ F G+ L + +D I ++D Q +C + H +V++V H++ S S D
Sbjct: 156 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV-SASRDK 214
Query: 208 LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 267
K+W+ + G GH E + + +DG S DQT ++W + +
Sbjct: 215 TIKMWE----VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV----ATK 266
Query: 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ-- 325
+ LR+ H H ++ S ++ S + +
Sbjct: 267 ECKAELRE------------------HRHVVECISWAPESSYSSISEATGSETKKSGKPG 308
Query: 326 KYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383
++ +GS D ++ ++D+ +G + L H+ VR +H ++S + D + W+
Sbjct: 309 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 77/188 (40%), Gaps = 24/188 (12%)
Query: 103 ASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162
+S+ + N + S++R+ + E+ G E+ + V+ + DG + + +
Sbjct: 196 SSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW-VRMVRPNQDGTLIASCSN 254
Query: 163 DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADET-------------------GHLIFSG 203
D + V+ + +C + H+ V + +A E+ G + SG
Sbjct: 255 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314
Query: 204 SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263
S D K+WD +S G L+GH + + G++ +S D+T ++WD +
Sbjct: 315 SRDKTIKMWD----VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370
Query: 264 SSNTTDNS 271
T N+
Sbjct: 371 RCMKTLNA 378
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 180 IPAHKSDVNTVCFADETGHLIFS----GSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 235
+ H+S V V F H +FS S+D+ KVWD G L GH + +
Sbjct: 104 LSGHRSPVTRVIF-----HPVFSVMVSASEDATIKVWD----YETGDFERTLKGHTDSVQ 154
Query: 236 FIDSRRDGRYFISNGKDQTTKLWDIR 261
I G+ S D T KLWD +
Sbjct: 155 DISFDHSGKLLASCSADMTIKLWDFQ 180
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 351 LDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383
L H +PV +HP++ +++S+S D I W+
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWD 136
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 102/254 (40%), Gaps = 25/254 (9%)
Query: 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVN------TVCFADETGH 198
+ + ++ G + G DN VY L +K + + A K V + C +
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDK-NENMAAKKKSVAMHTNYLSACSFTNSDM 167
Query: 199 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID--SRRDGRYFISNGKDQTTK 256
I + S D C +WD + G+ GH + +D G F+S G D+
Sbjct: 168 QILTASGDGTCALWD----VESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAM 223
Query: 257 LWDIRK------MSSNTTDNSRLRDYDWDYRWMEYPSYA--RRLKHPHDQSLATYKGHSV 308
+WD+R ++ +D + +R Y + A R D+ +A Y S+
Sbjct: 224 VWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESI 283
Query: 309 LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP 368
I S ++S + + ++ G +D ++ ++D++ G++V+ L H V P
Sbjct: 284 ----IFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGT 339
Query: 369 MLISSSWDCNIVRW 382
S SWD + W
Sbjct: 340 AFCSGSWDHTLRVW 353
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 143 FGIFSVKFSTDGQELVAAGSDNFIYVYD-LQANKCSLRIPAHKSDVNTVCFADETGHLIF 201
FG SV FS G+ L A +D I V+D L+ ++ S+ + H++ V+T+ + + G
Sbjct: 285 FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI-LFGHENRVSTLRVSPD-GTAFC 342
Query: 202 SGSDDSLCKVW 212
SGS D +VW
Sbjct: 343 SGSWDHTLRVW 353
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 79/363 (21%), Positives = 140/363 (38%), Gaps = 45/363 (12%)
Query: 37 DGMNSRVYTSQFSNDGSFFVAASQESN--IKVYNVDKNWKIQKDIETKALRWT--ITDTS 92
D + +V F+N + A+ S+ +K+++++ QK+ T +
Sbjct: 702 DEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN-----QKECRNTMFGHTNSVNHCR 756
Query: 93 LSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDED-EFGIFSVKFS 151
SPD + L S + + D S+ NV + L+ D ED E + +S
Sbjct: 757 FSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLE---DPQEDMEVIVKCCSWS 813
Query: 152 TDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD--ETGHLIFSGSDDSLC 209
DG ++ A N I+++D+ + L H +T+ + D HL
Sbjct: 814 ADGARIMVAAK-NKIFLFDIHTS--GLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCV 870
Query: 210 KVW--DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 267
++W D R ++ R GHL + + DG F+++ DQT +LW+ +K+ N+
Sbjct: 871 ELWNTDSRSKVADCR------GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNS 924
Query: 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV----LRTLIRCYFSPEYST 323
+ + + D + E + H L + + + C SP
Sbjct: 925 ---AVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHL-- 979
Query: 324 AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIY----PMLISSSWDCNI 379
+YI G + ++ I +LV+ H V WH + LISSS D I
Sbjct: 980 --QYIAFGDENGAIEILELVNNRIFQSRFQHKKTV----WHIQFTADEKTLISSSDDAEI 1033
Query: 380 VRW 382
W
Sbjct: 1034 QVW 1036
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 9/131 (6%)
Query: 130 KGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNT 189
K L+ A DE + FSTD + + D + +++ + H VN
Sbjct: 655 KLLEIKAHEDE----VLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNC 710
Query: 190 VCFADETGHLIF-SGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFIS 248
F + + HL+ +GS D K+WD +++ + GH + D + S
Sbjct: 711 CHFTNSSHHLLLATGSSDCFLKLWD----LNQKECRNTMFGHTNSVNHCRFSPDDKLLAS 766
Query: 249 NGKDQTTKLWD 259
D T KLWD
Sbjct: 767 CSADGTLKLWD 777
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS 204
++ ++F+ D + L+++ D I V++ Q +KC + + H+ V F + S S
Sbjct: 1012 VWHIQFTADEKTLISSSDDAEIQVWNWQLDKC-IFLRGHQETVKD--FRLLKNSRLLSWS 1068
Query: 205 DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLW 258
D KVW+ I G + H + D D F S D+T K+W
Sbjct: 1069 FDGTVKVWN----IITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIW 1118
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 37/205 (18%)
Query: 17 AADSCHVLSRYLPV------NGPWKV-DGMNSRVYTS-----------QFSNDGSFFVAA 58
A SC LS +L NG ++ + +N+R++ S QF+ D +++
Sbjct: 968 AQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISS 1027
Query: 59 SQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA--SICAIVNIVDVGS 116
S ++ I+V+ NW++ K I + + T+ D L + R L ++ + NI+ G+
Sbjct: 1028 SDDAEIQVW----NWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNII-TGN 1082
Query: 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA--GSDNFIYVYDLQAN 174
++ + H+G S D D + KFS+ + A D + +++L+ +
Sbjct: 1083 KEKDFVC-----HQGTVLSCDISHD-----ATKFSSTSADKTAKIWSFDLLLPLHELRGH 1132
Query: 175 KCSLRIPAHKSDVNTVCFADETGHL 199
+R A D + D+ G +
Sbjct: 1133 NGCVRCSAFSVDSTLLATGDDNGEI 1157
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 297 DQSLATYKGHSVLRTL-IRCY----FSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 351
D++L +K + + L I+ + +ST ++I T S D V I++ ++G V
Sbjct: 642 DKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTY 701
Query: 352 DFHNAPVRDCCWHP---IYPMLISSSWDCNIVRWEI 384
D H+ V +CC + +L + S DC + W++
Sbjct: 702 DEHSEQV-NCCHFTNSSHHLLLATGSSDCFLKLWDL 736
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 106/260 (40%), Gaps = 46/260 (17%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G +++Y + D V+ASQ+ + +++ K+ I ++ W +T + +P
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA-IPLRS-SWVMT-CAYAPSG 109
Query: 98 RFLVYA---SICAIVNIVDVGSSARES--LANVTEIHKGLDF-------SADGDED---- 141
++ +IC+I N+ + R S LA T F ++ GD
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 142 --------------EFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV 187
+ S+ + D + V+ D ++D++ C H+SD+
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH-----LEGITFIDSRRD 242
N +CF G+ +GSDD+ C+++D RA+ LM + + GIT + +
Sbjct: 230 NAICFF-PNGNAFATGSDDATCRLFDL-------RADQELMTYSHDNIICGITSVSFSKS 281
Query: 243 GRYFISNGKDQTTKLWDIRK 262
GR ++ D +WD K
Sbjct: 282 GRLLLAGYDDFNCNVWDALK 301
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 22/226 (9%)
Query: 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI----PAHKSDVNTVCFADETGHLI 200
+ + ++ G + G DN +Y+L+ + ++R+ H ++ F D+ + I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 157
Query: 201 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 260
+ S D+ C +WD I G+ GH + + D R F+S D + KLWD+
Sbjct: 158 VTSSGDTTCALWD----IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 261 RKMSSNTTDNSRLRDYDWDYRWMEYPSYA--------RRLKHPHDQSLATYKGHSVLRTL 312
R+ T D + + ++A R DQ L TY +++ +
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 313 IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPV 358
S +S + + + G D + ++D + + L H+ V
Sbjct: 274 T----SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 24/175 (13%)
Query: 88 ITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFS 147
+ SL+PD R V + A + DV RE + T F+ E I +
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDV----REGMCRQT-------FTGH----ESDINA 231
Query: 148 VKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS---DVNTVCFADETGHLIFSGS 204
+ F +G D ++DL+A++ L +H + + +V F+ ++G L+ +G
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSFS-KSGRLLLAGY 289
Query: 205 DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 259
DD C VWD + RA GVL GH ++ + DG + D K+W+
Sbjct: 290 DDFNCNVWDA---LKADRA-GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 106/260 (40%), Gaps = 46/260 (17%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G +++Y + D V+ASQ+ + +++ K+ I ++ W +T + +P
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA-IPLRS-SWVMT-CAYAPSG 109
Query: 98 RFLVYA---SICAIVNIVDVGSSARES--LANVTEIHKGLDF-------SADGDED---- 141
++ +IC+I N+ + R S LA T F ++ GD
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 142 --------------EFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV 187
+ S+ + D + V+ D ++D++ C H+SD+
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH-----LEGITFIDSRRD 242
N +CF G+ +GSDD+ C+++D RA+ LM + + GIT + +
Sbjct: 230 NAICFF-PNGNAFATGSDDATCRLFDL-------RADQELMTYSHDNIICGITSVSFSKS 281
Query: 243 GRYFISNGKDQTTKLWDIRK 262
GR ++ D +WD K
Sbjct: 282 GRLLLAGYDDFNCNVWDALK 301
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 22/226 (9%)
Query: 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI----PAHKSDVNTVCFADETGHLI 200
+ + ++ G + G DN +Y+L+ + ++R+ H ++ F D+ + I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 157
Query: 201 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 260
+ S D+ C +WD I G+ GH + + D R F+S D + KLWD+
Sbjct: 158 VTSSGDTTCALWD----IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 261 RKMSSNTTDNSRLRDYDWDYRWMEYPSYA--------RRLKHPHDQSLATYKGHSVLRTL 312
R+ T D + + ++A R DQ L TY +++ +
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 313 IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPV 358
S +S + + + G D + ++D + + L H+ V
Sbjct: 274 T----SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 24/175 (13%)
Query: 88 ITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFS 147
+ SL+PD R V + A + DV RE + T F+ E I +
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDV----REGMCRQT-------FTGH----ESDINA 231
Query: 148 VKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS---DVNTVCFADETGHLIFSGS 204
+ F +G D ++DL+A++ L +H + + +V F+ ++G L+ +G
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSFS-KSGRLLLAGY 289
Query: 205 DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 259
DD C VWD + RA GVL GH ++ + DG + D K+W+
Sbjct: 290 DDFNCNVWDA---LKADRA-GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 106/260 (40%), Gaps = 46/260 (17%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G +++Y + D V+ASQ+ + +++ K+ I ++ W +T + +P
Sbjct: 64 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA-IPLRS-SWVMT-CAYAPSG 120
Query: 98 RFLVYA---SICAIVNIVDVGSSARES--LANVTEIHKGLDF-------SADGDED---- 141
++ +IC+I N+ + R S LA T F ++ GD
Sbjct: 121 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 180
Query: 142 --------------EFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV 187
+ S+ + D + V+ D ++D++ C H+SD+
Sbjct: 181 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 240
Query: 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH-----LEGITFIDSRRD 242
N +CF G+ +GSDD+ C+++D RA+ LM + + GIT + +
Sbjct: 241 NAICFF-PNGNAFATGSDDATCRLFDL-------RADQELMTYSHDNIICGITSVSFSKS 292
Query: 243 GRYFISNGKDQTTKLWDIRK 262
GR ++ D +WD K
Sbjct: 293 GRLLLAGYDDFNCNVWDALK 312
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 22/226 (9%)
Query: 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI----PAHKSDVNTVCFADETGHLI 200
+ + ++ G + G DN +Y+L+ + ++R+ H ++ F D+ + I
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 168
Query: 201 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 260
+ S D+ C +WD I G+ GH + + D R F+S D + KLWD+
Sbjct: 169 VTSSGDTTCALWD----IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 224
Query: 261 RKMSSNTTDNSRLRDYDWDYRWMEYPSYA--------RRLKHPHDQSLATYKGHSVLRTL 312
R+ T D + + ++A R DQ L TY +++ +
Sbjct: 225 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 284
Query: 313 IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPV 358
S +S + + + G D + ++D + + L H+ V
Sbjct: 285 T----SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 326
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 24/175 (13%)
Query: 88 ITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFS 147
+ SL+PD R V + A + DV RE + T F+ E I +
Sbjct: 198 VMSLSLAPDTRLFVSGACDASAKLWDV----REGMCRQT-------FTGH----ESDINA 242
Query: 148 VKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS---DVNTVCFADETGHLIFSGS 204
+ F +G D ++DL+A++ L +H + + +V F+ ++G L+ +G
Sbjct: 243 ICFFPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSFS-KSGRLLLAGY 300
Query: 205 DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 259
DD C VWD + RA GVL GH ++ + DG + D K+W+
Sbjct: 301 DDFNCNVWDA---LKADRA-GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 14/120 (11%)
Query: 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS 204
++S++F DG +V+ D I V+D++ C + H+S + + D +++ SG+
Sbjct: 282 VYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NILVSGN 336
Query: 205 DDSLCKVWDRRCFISKGRANGVLMG---HLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261
DS K+WD I G+ L G H +T + ++ + I++ D T KLWD++
Sbjct: 337 ADSTVKIWD----IKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLK 390
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 25/222 (11%)
Query: 141 DEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI 200
D+ I ++F G +V+ DN + V+ KC + H V + D ++I
Sbjct: 118 DDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD---NII 172
Query: 201 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 260
SGS D KVW+ G L GH + + + +S +D T ++WDI
Sbjct: 173 ISGSTDRTLKVWN----AETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDI 226
Query: 261 RK---MSSNTTDNSRLRDYDWDYRWMEYPSYARRLK--HPHDQS-LATYKGHSVLRTLIR 314
+ + +R +D R + +Y +K P ++ L T +GH+
Sbjct: 227 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT------N 280
Query: 315 CYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNA 356
+S ++ ++ +GS D S+ ++D+ +G + L H +
Sbjct: 281 RVYSLQFDGI--HVVSGSLDTSIRVWDVETGNCIHTLTGHQS 320
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 77/199 (38%), Gaps = 48/199 (24%)
Query: 153 DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVW 212
DG+ +V+ D + V+D + C + H + V ++ F G + SGS D+ +VW
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVW 304
Query: 213 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
D + G L GH + ++ + + +S D T K+WDI+
Sbjct: 305 D----VETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKT---------- 348
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332
Q L T +G + ++ + C + ++ T S
Sbjct: 349 ------------------------GQCLQTLQGPNKHQSAVTC-----LQFNKNFVITSS 379
Query: 333 SDNSVYIYDLVSGAQVAKL 351
D +V ++DL +G + L
Sbjct: 380 DDGTVKLWDLKTGEFIRNL 398
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 24/143 (16%)
Query: 138 GDEDEFGIFSVKF------------STDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS 185
GD+ +FG+ F + DG ++A D + ++D+ + R HKS
Sbjct: 49 GDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 108
Query: 186 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI------DS 239
DV +V D+ +I SGS D KVW KG+ L+GH + ++ + +
Sbjct: 109 DVMSVDI-DKKASMIISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 240 RRDGRYFISNGKDQTTKLWDIRK 262
D IS G D+ K W++ +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQ 185
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/234 (18%), Positives = 78/234 (33%), Gaps = 43/234 (18%)
Query: 157 LVAAGSDNFIYVYDLQANKCSLRIPAHK----SDVNTVCFADETGHLIFSGSDDSLCKVW 212
L++A D + + L + +P S + C G S S D ++W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 213 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
D ++ G +GH + +D + IS +D+T K+W I+
Sbjct: 93 D----VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG---------- 138
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332
Q LAT GH+ + +R + + I +
Sbjct: 139 -------------------------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173
Query: 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386
+D V ++L A HN+ + P ++ S+ D I+ W +
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G NS + T S DG+ +A ++ I ++N+ +K + T + + + + SP++
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNL----AAKKAMYTLSAQDEVFSLAFSPNR 249
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
+L A+ I V S + L V ++ +F+ E S+ +S DGQ L
Sbjct: 250 YWLAAATATGI----KVFSLDPQYL--VDDLRP--EFAGYSKAAEPHAVSLAWSADGQTL 301
Query: 158 VAAGSDNFIYVYDL 171
A +DN I V+ +
Sbjct: 302 FAGYTDNVIRVWQV 315
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 149 KFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSL 208
K D +++AG+D + ++L + H S++NT+ A G LI S D
Sbjct: 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGE 219
Query: 209 CKVWD 213
+W+
Sbjct: 220 IMLWN 224
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 24/143 (16%)
Query: 138 GDEDEFGIFSVKF------------STDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS 185
GD+ +FG+ F + DG ++A D + ++D+ + R HKS
Sbjct: 43 GDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 102
Query: 186 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI------DS 239
DV +V D+ +I SGS D KVW KG+ L+GH + ++ + +
Sbjct: 103 DVMSVDI-DKKASMIISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKA 156
Query: 240 RRDGRYFISNGKDQTTKLWDIRK 262
D IS G D+ K W++ +
Sbjct: 157 DDDSVTIISAGNDKMVKAWNLNQ 179
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/232 (18%), Positives = 78/232 (33%), Gaps = 43/232 (18%)
Query: 157 LVAAGSDNFIYVYDLQANKCSLRIPAHK----SDVNTVCFADETGHLIFSGSDDSLCKVW 212
L++A D + + L + +P S + C G S S D ++W
Sbjct: 27 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 86
Query: 213 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
D ++ G +GH + +D + IS +D+T K+W I+
Sbjct: 87 D----VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG---------- 132
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332
Q LAT GH+ + +R + + I +
Sbjct: 133 -------------------------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 167
Query: 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384
+D V ++L A HN+ + P ++ S+ D I+ W +
Sbjct: 168 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 219
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G NS + T S DG+ +A ++ I ++N+ +K + T + + + + SP++
Sbjct: 188 GHNSNINTLTASPDGTLIASAGKDGEIMLWNL----AAKKAMYTLSAQDEVFSLAFSPNR 243
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
+L A+ I V S + L V ++ +F+ E S+ +S DGQ L
Sbjct: 244 YWLAAATATGI----KVFSLDPQYL--VDDLRP--EFAGYSKAAEPHAVSLAWSADGQTL 295
Query: 158 VAAGSDNFIYVYDL 171
A +DN I V+ +
Sbjct: 296 FAGYTDNVIRVWQV 309
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 149 KFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSL 208
K D +++AG+D + ++L + H S++NT+ A G LI S D
Sbjct: 155 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGE 213
Query: 209 CKVWD 213
+W+
Sbjct: 214 IMLWN 218
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 24/143 (16%)
Query: 138 GDEDEFGIFSVKF------------STDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS 185
GD+ +FG+ F + DG ++A D + ++D+ + R HKS
Sbjct: 49 GDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 108
Query: 186 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI------DS 239
DV +V D+ +I SGS D KVW KG+ L+GH + ++ + +
Sbjct: 109 DVMSVDI-DKKASMIISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 240 RRDGRYFISNGKDQTTKLWDIRK 262
D IS G D+ K W++ +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQ 185
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/232 (18%), Positives = 78/232 (33%), Gaps = 43/232 (18%)
Query: 157 LVAAGSDNFIYVYDLQANKCSLRIPAHK----SDVNTVCFADETGHLIFSGSDDSLCKVW 212
L++A D + + L + +P S + C G S S D ++W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 213 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
D ++ G +GH + +D + IS +D+T K+W I+
Sbjct: 93 D----VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG---------- 138
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332
Q LAT GH+ + +R + + I +
Sbjct: 139 -------------------------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173
Query: 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384
+D V ++L A HN+ + P ++ S+ D I+ W +
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G NS + T S DG+ +A ++ I ++N+ +K + T + + + + SP++
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNL----AAKKAMYTLSAQDEVFSLAFSPNR 249
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
+L A+ I V S + L V ++ +F+ E S+ +S DGQ L
Sbjct: 250 YWLAAATATGI----KVFSLDPQYL--VDDLRP--EFAGYSAAAEPHAVSLAWSADGQTL 301
Query: 158 VAAGSDNFIYVYDL 171
A +DN I V+ +
Sbjct: 302 FAGYTDNVIRVWQV 315
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 149 KFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSL 208
K D +++AG+D + ++L + H S++NT+ A G LI S D
Sbjct: 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGE 219
Query: 209 CKVWD 213
+W+
Sbjct: 220 IMLWN 224
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 24/143 (16%)
Query: 138 GDEDEFGIFSVKF------------STDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS 185
GD+ +FG+ F + DG ++A D + ++D+ + R HKS
Sbjct: 49 GDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 108
Query: 186 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI------DS 239
DV +V D+ +I SGS D KVW KG+ L+GH + ++ + +
Sbjct: 109 DVMSVDI-DKKASMIISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 240 RRDGRYFISNGKDQTTKLWDIRK 262
D IS G D+ K W++ +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQ 185
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/232 (18%), Positives = 78/232 (33%), Gaps = 43/232 (18%)
Query: 157 LVAAGSDNFIYVYDLQANKCSLRIPAHK----SDVNTVCFADETGHLIFSGSDDSLCKVW 212
L++A D + + L + +P S + C G S S D ++W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 213 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
D ++ G +GH + +D + IS +D+T K+W I+
Sbjct: 93 D----VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG---------- 138
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332
Q LAT GH+ + +R + + I +
Sbjct: 139 -------------------------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173
Query: 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384
+D V ++L A HN+ + P ++ S+ D I+ W +
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 12/132 (9%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G NS + T S DG+ +A ++ I ++N+ +K + T + + + + SP++
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNL----AAKKAMYTLSAQDEVFSLAFSPNR 249
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
+L A+ I V S + L V ++ +F+ E S+ +S DGQ L
Sbjct: 250 YWLAAATATGI----KVFSLDPQYL--VDDLRP--EFAGYSKAAEPHAVSLAWSADGQTL 301
Query: 158 VAAGSDNFIYVY 169
A +DN I V+
Sbjct: 302 FAGYTDNVIRVW 313
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 149 KFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSL 208
K D +++AG+D + ++L + H S++NT+ A G LI S D
Sbjct: 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGE 219
Query: 209 CKVWD 213
+W+
Sbjct: 220 IMLWN 224
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 24/143 (16%)
Query: 138 GDEDEFGIFSVKF------------STDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS 185
GD+ +FG+ F + DG ++A D + ++D+ + R HKS
Sbjct: 49 GDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 108
Query: 186 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI------DS 239
DV +V D+ +I SGS D KVW KG+ L+GH + ++ + +
Sbjct: 109 DVMSVDI-DKKASMIISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 240 RRDGRYFISNGKDQTTKLWDIRK 262
D IS G D+ K W++ +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQ 185
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/232 (18%), Positives = 78/232 (33%), Gaps = 43/232 (18%)
Query: 157 LVAAGSDNFIYVYDLQANKCSLRIPAHK----SDVNTVCFADETGHLIFSGSDDSLCKVW 212
L++A D + + L + +P S + C G S S D ++W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 213 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
D ++ G +GH + +D + IS +D+T K+W I+
Sbjct: 93 D----VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG---------- 138
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332
Q LAT GH+ + +R + + I +
Sbjct: 139 -------------------------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173
Query: 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384
+D V ++L A HN+ + P ++ S+ D I+ W +
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G NS + T S DG+ +A ++ I ++N+ +K + T + + + + SP++
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNL----AAKKAMYTLSAQDEVFSLAFSPNR 249
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
+L A+ I V S + L V ++ +F+ E S+ +S DGQ L
Sbjct: 250 YWLAAATATGI----KVFSLDPQYL--VDDLRP--EFAGYSKAAEPHAVSLAWSADGQTL 301
Query: 158 VAAGSDNFIYVYDL 171
A +DN I V+ +
Sbjct: 302 FAGYTDNVIRVWQV 315
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 149 KFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSL 208
K D +++AG+D + ++L + H S++NT+ A G LI S D
Sbjct: 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGE 219
Query: 209 CKVWD 213
+W+
Sbjct: 220 IMLWN 224
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 106/260 (40%), Gaps = 46/260 (17%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G +++Y + D ++ASQ+ + +++ K+ I ++ W +T + +P
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA-IPLRS-SWVMT-CAYAPSG 109
Query: 98 RFLVYA---SICAIVNIVDVGSSARES--LANVTEIHKGLDF-------SADGDED---- 141
++ +IC+I N+ + R S LA T F ++ GD
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 142 --------------EFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV 187
+ S+ + D + V+ D ++D++ C H+SD+
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH-----LEGITFIDSRRD 242
N +CF G+ +GSDD+ C+++D RA+ LM + + GIT + +
Sbjct: 230 NAICFF-PNGNAFATGSDDATCRLFDL-------RADQELMTYSHDNIICGITSVSFSKS 281
Query: 243 GRYFISNGKDQTTKLWDIRK 262
GR ++ D +WD K
Sbjct: 282 GRLLLAGYDDFNCNVWDALK 301
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 22/226 (9%)
Query: 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI----PAHKSDVNTVCFADETGHLI 200
+ + ++ G + G DN +Y+L+ + ++R+ H ++ F D+ + I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 157
Query: 201 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 260
+ S D+ C +WD I G+ GH + + D R F+S D + KLWD+
Sbjct: 158 VTSSGDTTCALWD----IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 261 RKMSSNTTDNSRLRDYDWDYRWMEYPSYA--------RRLKHPHDQSLATYKGHSVLRTL 312
R+ T D + + ++A R DQ L TY +++ +
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 313 IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPV 358
S +S + + + G D + ++D + + L H+ V
Sbjct: 274 T----SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 24/175 (13%)
Query: 88 ITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFS 147
+ SL+PD R V + A + DV RE + T F+ E I +
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDV----REGMCRQT-------FTGH----ESDINA 231
Query: 148 VKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS---DVNTVCFADETGHLIFSGS 204
+ F +G D ++DL+A++ L +H + + +V F+ ++G L+ +G
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSFS-KSGRLLLAGY 289
Query: 205 DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 259
DD C VWD + RA GVL GH ++ + DG + D K+W+
Sbjct: 290 DDFNCNVWDA---LKADRA-GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 106/260 (40%), Gaps = 46/260 (17%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G +++Y + D ++ASQ+ + +++ K+ I ++ W +T + +P
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA-IPLRS-SWVMT-CAYAPSG 109
Query: 98 RFLVYA---SICAIVNIVDVGSSARES--LANVTEIHKGLDF-------SADGDED---- 141
++ +IC+I N+ + R S LA T F ++ GD
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 142 --------------EFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV 187
+ S+ + D + V+ D ++D++ C H+SD+
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH-----LEGITFIDSRRD 242
N +CF G+ +GSDD+ C+++D RA+ LM + + GIT + +
Sbjct: 230 NAICFF-PNGNAFATGSDDATCRLFDL-------RADQELMTYSHDNIICGITSVSFSKS 281
Query: 243 GRYFISNGKDQTTKLWDIRK 262
GR ++ D +WD K
Sbjct: 282 GRLLLAGYDDFNCNVWDALK 301
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 22/226 (9%)
Query: 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI----PAHKSDVNTVCFADETGHLI 200
+ + ++ G + G DN +Y+L+ + ++R+ H ++ F D+ + I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 157
Query: 201 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 260
+ S D+ C +WD I G+ GH + + D R F+S D + KLWD+
Sbjct: 158 VTSSGDTTCALWD----IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 261 RKMSSNTTDNSRLRDYDWDYRWMEYPSYA--------RRLKHPHDQSLATYKGHSVLRTL 312
R+ T D + + ++A R DQ L TY +++ +
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 313 IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPV 358
S +S + + + G D + ++D + + L H+ V
Sbjct: 274 T----SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 24/175 (13%)
Query: 88 ITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFS 147
+ SL+PD R V + A + DV RE + T F+ E I +
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDV----REGMCRQT-------FTGH----ESDINA 231
Query: 148 VKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS---DVNTVCFADETGHLIFSGS 204
+ F +G D ++DL+A++ L +H + + +V F+ ++G L+ +G
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSFS-KSGRLLLAGY 289
Query: 205 DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 259
DD C VWD + RA GVL GH ++ + DG + D K+W+
Sbjct: 290 DDFNCNVWDA---LKADRA-GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 24/144 (16%)
Query: 138 GDEDEFGIFSVKF------------STDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS 185
GD+ +FG+ F + DG ++A D + ++D+ + R HKS
Sbjct: 49 GDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 108
Query: 186 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI------DS 239
DV +V D+ I SGS D KVW KG+ L+GH + ++ + +
Sbjct: 109 DVXSVDI-DKKASXIISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 240 RRDGRYFISNGKDQTTKLWDIRKM 263
D IS G D+ K W++ +
Sbjct: 163 DDDSVTIISAGNDKXVKAWNLNQF 186
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 43/232 (18%), Positives = 77/232 (33%), Gaps = 43/232 (18%)
Query: 157 LVAAGSDNFIYVYDLQANKCSLRIPAHK----SDVNTVCFADETGHLIFSGSDDSLCKVW 212
L++A D + + L + +P S + C G S S D ++W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 213 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
D ++ G +GH + +D + IS +D+T K+W I+
Sbjct: 93 D----VATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKG---------- 138
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332
Q LAT GH+ + +R + + I +
Sbjct: 139 -------------------------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173
Query: 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384
+D V ++L A HN+ + P ++ S+ D I W +
Sbjct: 174 NDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNL 225
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G NS + T S DG+ +A ++ I ++N+ +K T + + + + SP++
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIXLWNL----AAKKAXYTLSAQDEVFSLAFSPNR 249
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
+L A+ I V S + L V ++ +F+ E S+ +S DGQ L
Sbjct: 250 YWLAAATATGI----KVFSLDPQYL--VDDLRP--EFAGYSKAAEPHAVSLAWSADGQTL 301
Query: 158 VAAGSDNFIYVYDL 171
A +DN I V+ +
Sbjct: 302 FAGYTDNVIRVWQV 315
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 149 KFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSL 208
K D +++AG+D + ++L + H S++NT+ A G LI S D
Sbjct: 161 KADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGE 219
Query: 209 CKVWD 213
+W+
Sbjct: 220 IXLWN 224
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 13/123 (10%)
Query: 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA---DETGHLIF 201
I S K DG L+ G + + ++DL A + RI A + C+A + F
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAP--TPRIKAELTSSAPACYALAISPDSKVCF 157
Query: 202 SGSDDSLCKVWD--RRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 259
S D VWD + + + GH +G + ID DG + G D T + WD
Sbjct: 158 SCCSDGNIAVWDLHNQTLVRQ------FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211
Query: 260 IRK 262
+R+
Sbjct: 212 LRE 214
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 102/225 (45%), Gaps = 32/225 (14%)
Query: 45 TSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWT---ITDTSLSPDQRFLV 101
T QF + ++AS++ I ++ + ++ + I +ALR ++D +S D +F +
Sbjct: 24 TPQFPD---MILSASRDKTIIMWKLTRD-ETNYGIPQRALRGHSHFVSDVVISSDGQFAL 79
Query: 102 YASICAIVNIVDV--GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159
S + + D+ G++ R + + ++ SV FS+D +++V+
Sbjct: 80 SGSWDGTLRLWDLTTGTTTRRFVGHTKDV-----------------LSVAFSSDNRQIVS 122
Query: 160 AGSDNFIYVYD-LQANKCSLRIPAHKSDVNTVCFA-DETGHLIFSGSDDSLCKVWDRRCF 217
D I +++ L K +++ +H V+ V F+ + + +I S D L KVW+
Sbjct: 123 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN---- 178
Query: 218 ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262
++ + +GH + + DG S GKD LWD+ +
Sbjct: 179 LANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 223
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 180 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD-RRCFISKGRANGVLMGHLEGITFID 238
+ H V + + +I S S D +W R + G L GH ++ +
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 239 SRRDGRYFISNGKDQTTKLWDI 260
DG++ +S D T +LWD+
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDL 92
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 102/225 (45%), Gaps = 32/225 (14%)
Query: 45 TSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWT---ITDTSLSPDQRFLV 101
T QF + ++AS++ I ++ + ++ + I +ALR ++D +S D +F +
Sbjct: 47 TPQFPD---MILSASRDKTIIMWKLTRD-ETNYGIPQRALRGHSHFVSDVVISSDGQFAL 102
Query: 102 YASICAIVNIVDV--GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159
S + + D+ G++ R + + ++ SV FS+D +++V+
Sbjct: 103 SGSWDGTLRLWDLTTGTTTRRFVGHTKDV-----------------LSVAFSSDNRQIVS 145
Query: 160 AGSDNFIYVYD-LQANKCSLRIPAHKSDVNTVCFA-DETGHLIFSGSDDSLCKVWDRRCF 217
D I +++ L K +++ +H V+ V F+ + + +I S D L KVW+
Sbjct: 146 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN---- 201
Query: 218 ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262
++ + +GH + + DG S GKD LWD+ +
Sbjct: 202 LANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 158 VAAGSDNFIYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD-R 214
V G++N +Y + + +LR + H V + + +I S S D +W
Sbjct: 11 VDLGTEN-LYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLT 69
Query: 215 RCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 260
R + G L GH ++ + DG++ +S D T +LWD+
Sbjct: 70 RDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 115
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 89/227 (39%), Gaps = 43/227 (18%)
Query: 158 VAAGSDNF-IYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRC 216
+ GSD+F I V++ + + AH + ++ T + SGSDD K+W+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIA-VHPTKPYVLSGSDDLTVKLWNWE- 127
Query: 217 FISKGRANGVLMGHLEGITFID-SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 275
+ GH + + + +D F S D+T K+W + + + N T +
Sbjct: 128 --NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE- 184
Query: 276 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 335
R + Y Y Y P+ + Y+ T S D
Sbjct: 185 -----RGVNYVDY---------------------------YPLPD----KPYMITASDDL 208
Query: 336 SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 382
++ I+D + + VA L+ H + V +HP P++IS S D + W
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 153 DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVW 212
D ++ A D I ++D Q C + H S+V+ F T +I SGS+D K+W
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTLKIW 255
Query: 213 DRRCF 217
+ +
Sbjct: 256 NSSTY 260
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 80/217 (36%), Gaps = 22/217 (10%)
Query: 158 VAAGSDNF-IYVYDLQAN-KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215
V +GSD+ + +++ + N H+ V V F + SG D KVW
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS-- 169
Query: 216 CFISKGRANGVLM-GHLEGITFID--SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
+ + N L G G+ ++D D Y I+ D T K+WD + S T
Sbjct: 170 --LGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHDQSL-----ATYKGHSVLRT-LIRCYFSPEYSTAQK 326
+ + + + +P+ + D +L +TYK L L R + + T +K
Sbjct: 228 MSNVSFA---VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK 284
Query: 327 YIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCW 363
DN + L + LD PV W
Sbjct: 285 NYIASGFDNGFTVLSLGNDEPTLSLD----PVGKLVW 317
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 7/126 (5%)
Query: 136 ADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE 195
A+ DE + + SVK+S DG L + + +YD+++ + H++ V + +
Sbjct: 129 AETDESTY-VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--- 184
Query: 196 TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTT 255
H++ SGS D R G L GH + + R DG S G D
Sbjct: 185 NRHVLSSGSRSGAIHHHDVRI---ANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVV 241
Query: 256 KLWDIR 261
++WD R
Sbjct: 242 QIWDAR 247
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSG 203
+ + + +DG +L + G+DN + ++D +++ H + V V + +L+ +G
Sbjct: 220 VCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATG 278
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 90/227 (39%), Gaps = 43/227 (18%)
Query: 158 VAAGSDNF-IYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRC 216
+ GSD+F I V++ + + AH + ++ T + SGSDD K+W+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIA-VHPTKPYVLSGSDDLTVKLWN--- 125
Query: 217 FISKGRANGVLMGHLEGITFID-SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 275
+ + GH + + + +D F S D+T K+W + + + N T
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT------- 178
Query: 276 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 335
L T + V + Y P+ + Y+ T S D
Sbjct: 179 ------------------------LTTGQERGV--NYVDYYPLPD----KPYMITASDDL 208
Query: 336 SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 382
++ I+D + + VA L+ H + V +HP P++IS S D + W
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 69/170 (40%), Gaps = 26/170 (15%)
Query: 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113
+ ++ S + +K++N + NW +++ E + F+ +C N D
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGH--------------EHFV----MCVAFNPKD 152
Query: 114 VGSSARESLANVTEI----HKGLDFSADGDEDEFGIFSVKFST--DGQELVAAGSDNFIY 167
+ A L ++ +F+ + E G+ V + D ++ A D I
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 168 VYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217
++D Q C + H S+V+ F T +I SGS+D K+W+ +
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTLKIWNSSTY 260
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 59/281 (20%), Positives = 104/281 (37%), Gaps = 31/281 (11%)
Query: 73 WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS-ARESLANVTEIHKG 131
W + +E ++++ +T+T + + A N + VGS R + N K
Sbjct: 40 WNYETQVEVRSIQ--VTETPVRAGK-------FIARKNWIIVGSDDFRIRVFNYNTGEKV 90
Query: 132 LDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTV 190
+DF A D I S+ +++ D + +++ + N H+ V V
Sbjct: 91 VDFEAHPDY----IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146
Query: 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-GHLEGITFID--SRRDGRYFI 247
F + SG D KVW + + N L G G+ ++D D Y I
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWS----LGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 248 SNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL-----AT 302
+ D T K+WD + S T + + + + +P+ + D +L +T
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFA---VFHPTLPIIISGSEDGTLKIWNSST 259
Query: 303 YKGHSVLRT-LIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 342
YK L L R + + T +K DN + L
Sbjct: 260 YKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 90/227 (39%), Gaps = 43/227 (18%)
Query: 158 VAAGSDNF-IYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRC 216
+ GSD+F I V++ + + AH + ++ T + SGSDD K+W+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIA-VHPTKPYVLSGSDDLTVKLWN--- 125
Query: 217 FISKGRANGVLMGHLEGITFID-SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 275
+ + GH + + + +D F S D+T K+W + + + N T
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT------- 178
Query: 276 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 335
L T + V + Y P+ + Y+ T S D
Sbjct: 179 ------------------------LTTGQERGV--NYVDYYPLPD----KPYMITASDDL 208
Query: 336 SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 382
++ I+D + + VA L+ H + V +HP P++IS S D + W
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 69/170 (40%), Gaps = 26/170 (15%)
Query: 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113
+ ++ S + +K++N + NW +++ E + F+ +C N D
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGH--------------EHFV----MCVAFNPKD 152
Query: 114 VGSSARESLANVTEI----HKGLDFSADGDEDEFGIFSVKFST--DGQELVAAGSDNFIY 167
+ A L ++ +F+ + E G+ V + D ++ A D I
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 168 VYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217
++D Q C + H S+V+ F T +I SGS+D K+W+ +
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTLKIWNSSTY 260
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 59/281 (20%), Positives = 104/281 (37%), Gaps = 31/281 (11%)
Query: 73 WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS-ARESLANVTEIHKG 131
W + +E ++++ +T+T + + A N + VGS R + N K
Sbjct: 40 WNYETQVEVRSIQ--VTETPVRAGK-------FIARKNWIIVGSDDFRIRVFNYNTGEKV 90
Query: 132 LDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTV 190
+DF A D I S+ +++ D + +++ + N H+ V V
Sbjct: 91 VDFEAHPDY----IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146
Query: 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-GHLEGITFID--SRRDGRYFI 247
F + SG D KVW + + N L G G+ ++D D Y I
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWS----LGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 248 SNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL-----AT 302
+ D T K+WD + S T + + + + +P+ + D +L +T
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFA---VFHPTLPIIISGSEDGTLKIWNSST 259
Query: 303 YKGHSVLRT-LIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 342
YK L L R + + T +K DN + L
Sbjct: 260 YKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 89/227 (39%), Gaps = 43/227 (18%)
Query: 158 VAAGSDNF-IYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRC 216
+ GSD+F I V++ + + AH + ++ T + SGSDD K+W+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIA-VHPTKPYVLSGSDDLTVKLWNWE- 127
Query: 217 FISKGRANGVLMGHLEGITFID-SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 275
+ GH + + + +D F S D+T K+W + + + N T +
Sbjct: 128 --NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE- 184
Query: 276 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 335
R + Y Y Y P+ + Y+ T S D
Sbjct: 185 -----RGVNYVDY---------------------------YPLPD----KPYMITASDDL 208
Query: 336 SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 382
++ I+D + + VA L+ H + V +HP P++IS S D + W
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 153 DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVW 212
D ++ A D I ++D Q C + H S+V+ F T +I SGS+D K+W
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTLKIW 255
Query: 213 DRRCF 217
+ +
Sbjct: 256 NSSTY 260
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 110/302 (36%), Gaps = 35/302 (11%)
Query: 73 WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS-ARESLANVTEIHKG 131
W + +E ++++ +T+T + + A N + VGS R + N K
Sbjct: 40 WNYETQVEVRSIQ--VTETPVRAGK-------FIARKNWIIVGSDDFRIRVFNYNTGEKV 90
Query: 132 LDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTV 190
+DF A D I S+ +++ D + +++ + N H+ V V
Sbjct: 91 VDFEAHPDY----IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146
Query: 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-GHLEGITFID--SRRDGRYFI 247
F + SG D KVW + + N L G G+ ++D D Y I
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWS----LGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 248 SNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL-----AT 302
+ D T K+WD + S T + + + + +P+ + D +L +T
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFA---VFHPTLPIIISGSEDGTLKIWNSST 259
Query: 303 YKGHSVLRT-LIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDC 361
YK L L R + + T +K DN + L + LD PV
Sbjct: 260 YKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLD----PVGKL 315
Query: 362 CW 363
W
Sbjct: 316 VW 317
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI----PAHKSDVNTVCFADETGH-L 199
+ SV FS D +++V+A D I +++ +C I H+ V+ V F+ T
Sbjct: 475 VLSVAFSLDNRQIVSASRDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT 533
Query: 200 IFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 259
I S S D KVW+ +S + L GH ++ + DG S GKD LWD
Sbjct: 534 IVSASWDKTVKVWN----LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD 589
Query: 260 I 260
+
Sbjct: 590 L 590
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 53/224 (23%)
Query: 148 VKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDS 207
V S+DGQ ++ D + ++DL A + R H DV +V F+ + ++ S S D
Sbjct: 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIV-SASRDR 494
Query: 208 LCKVWDR----RCFISKGRANGVLMGHLEGITFIDSRRDGRY--FISNGKDQTTKLWDIR 261
K+W+ + IS+G GH + ++ + + +S D+T K+W++
Sbjct: 495 TIKLWNTLGECKYTISEGGE-----GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL- 548
Query: 262 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY 321
N +LR +T GH+ + + SP+
Sbjct: 549 -------SNCKLR--------------------------STLAGHTGYVSTVAV--SPDG 573
Query: 322 STAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHP 365
S +G D V ++DL G ++ L+ N+ + C+ P
Sbjct: 574 SLCA----SGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSP 612
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 72/179 (40%), Gaps = 22/179 (12%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD- 96
G V + FS D V+AS++ IK++N K + R ++ SP+
Sbjct: 470 GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529
Query: 97 -QRFLVYASICAIVNIVDVGS-SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG 154
Q +V AS V + ++ + R +LA H G + +V S DG
Sbjct: 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAG----HTGY------------VSTVAVSPDG 573
Query: 155 QELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD 213
+ G D + ++DL K + A+ S ++ +CF+ + + K+WD
Sbjct: 574 SLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSPN--RYWLCAATEHGIKIWD 629
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 86/227 (37%), Gaps = 35/227 (15%)
Query: 177 SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF 236
++++ H+ + V + E G L+FS S DS VW + G G L GH I
Sbjct: 25 AIKLTGHERPLTQVKYNKE-GDLLFSCSKDSSASVW----YSLNGERLGTLDGHTGTIWS 79
Query: 237 IDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARR----- 291
ID +Y ++ D + KLWD+ T S + + +E+
Sbjct: 80 IDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPV-----PVKRVEFSPCGNYFLAIL 134
Query: 292 ---LKHPHDQSLATYKGHSVLRTLIRCYFSP----------------EYSTAQKYIYTGS 332
+K+P ++ + S L + P +ST KYI G
Sbjct: 135 DNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH 194
Query: 333 SDNSVYIYDLVSGAQ-VAKLDFHNAPVRDCCWHPIYPMLISSSWDCN 378
D + YD+ + + V +D H + D + P I+SS D N
Sbjct: 195 KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN 241
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 7/140 (5%)
Query: 47 QFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC 106
QFS D ++F+ +S+++N + +V ++ K ET + ++P + F++
Sbjct: 225 QFSPDLTYFITSSRDTNSFLVDV-STLQVLKKYETDC---PLNTAVITPLKEFIILGGGQ 280
Query: 107 AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFG-IFSVKFSTDGQELVAAGSDNF 165
++ +SA E HK + + FG + +V S G + G D F
Sbjct: 281 EAKDVTT--TSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGF 338
Query: 166 IYVYDLQANKCSLRIPAHKS 185
I ++ + + + K+
Sbjct: 339 IRLHHFEKSYFDFKYDVEKA 358
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 72/367 (19%), Positives = 138/367 (37%), Gaps = 69/367 (18%)
Query: 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP 95
+ G + +VY+ ++ + ++ V+ASQ+ + V+N + QK K + + + +P
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS---QKTHAIKLHCPWVMECAFAP 118
Query: 96 DQRFLVYASICAIVNIVDVGSSA-RESLANVTEI---HKGLDFSADGDEDEFGIFSVKFS 151
+ + + + + +I ++ S A R+ V+ + HKG S D+
Sbjct: 119 NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ--------- 169
Query: 152 TDGQELVAAGSDNFIYVYDLQANKCSLRIP--------AHKSDVNTVCFADETGHLIFSG 203
L+ D ++D+ + RI H +DV ++ ++ SG
Sbjct: 170 --ETRLITGSGDQTCVLWDVTTGQ---RISIFGSEFPSGHTADVLSLSINSLNANMFISG 224
Query: 204 SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263
S D+ ++WD R RA GH I + DG+ F + D T +L+D+R
Sbjct: 225 SCDTTVRLWDLRI---TSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT- 280
Query: 264 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST 323
+L+ Y+ R +D L S +S
Sbjct: 281 ------GHQLQVYN-------------REPDRNDNELPIVT-------------SVAFSI 308
Query: 324 AQKYIYTGSSDNSVYIYDLVSGAQVAKL----DFHNAPVRDCCWHPIYPMLISSSWDCNI 379
+ + ++ G S+ Y++D + V L + H + L + SWD N+
Sbjct: 309 SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNL 368
Query: 380 VRWEIPG 386
W G
Sbjct: 369 KIWAFSG 375
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 5/161 (3%)
Query: 136 ADGDEDEFGI-FSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 194
AD DE+ + ++ +T L AGS I + + +C H + +N + F
Sbjct: 102 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP 161
Query: 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT 254
+L+ S S D ++W+ + GV GH + + D G +S G D +
Sbjct: 162 RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-EGHRDEVLSADYDLLGEKIMSCGMDHS 220
Query: 255 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHP 295
KLW +++S N+ YD++ P ++++ P
Sbjct: 221 LKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 258
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 5/161 (3%)
Query: 136 ADGDEDEFGI-FSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 194
AD DE+ + ++ +T L AGS I + + +C H + +N + F
Sbjct: 61 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP 120
Query: 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT 254
+L+ S S D ++W+ + GV GH + + D G +S G D +
Sbjct: 121 RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-EGHRDEVLSADYDLLGEKIMSCGMDHS 179
Query: 255 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHP 295
KLW +++S N+ YD++ P ++++ P
Sbjct: 180 LKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 217
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 5/161 (3%)
Query: 136 ADGDEDEFGI-FSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 194
AD DE+ + ++ +T L AGS I + + +C H + +N + F
Sbjct: 65 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP 124
Query: 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT 254
+L+ S S D ++W+ + GV GH + + D G +S G D +
Sbjct: 125 RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-EGHRDEVLSADYDLLGEKIMSCGMDHS 183
Query: 255 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHP 295
KLW +++S N+ YD++ P ++++ P
Sbjct: 184 LKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 221
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 5/161 (3%)
Query: 136 ADGDEDEFGI-FSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 194
AD DE+ + ++ +T L AGS I + + +C H + +N + F
Sbjct: 65 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP 124
Query: 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT 254
+L+ S S D ++W+ + GV GH + + D G +S G D +
Sbjct: 125 RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-EGHRDEVLSADYDLLGEKIMSCGMDHS 183
Query: 255 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHP 295
KLW +++S N+ YD++ P ++++ P
Sbjct: 184 LKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 221
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 5/161 (3%)
Query: 136 ADGDEDEFGI-FSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 194
AD DE+ + ++ +T L AGS I + + +C H + +N + F
Sbjct: 66 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP 125
Query: 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT 254
+L+ S S D ++W+ + GV GH + + D G +S G D +
Sbjct: 126 RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-EGHRDEVLSADYDLLGEKIMSCGMDHS 184
Query: 255 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHP 295
KLW +++S N+ YD++ P ++++ P
Sbjct: 185 LKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 222
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 21/170 (12%)
Query: 182 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR 241
AH S++ + F +G + S S D K+W + G L+GH +T I
Sbjct: 137 AHVSEITKLKFF-PSGEALISSSQDMQLKIWS----VKDGSNPRTLIGHRATVTDIAIID 191
Query: 242 DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 301
GR +S D T +LW+ ++ T N + +D + R+L ++
Sbjct: 192 RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL-----HEIS 246
Query: 302 TYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 351
T K +++ E+ T KY+ G + ++++ S Q +L
Sbjct: 247 TSKKNNL-----------EFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL 285
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 21/170 (12%)
Query: 182 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR 241
AH S++ + F +G + S S D K+W + G L+GH +T I
Sbjct: 134 AHVSEITKLKFF-PSGEALISSSQDMQLKIWS----VKDGSNPRTLIGHRATVTDIAIID 188
Query: 242 DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 301
GR +S D T +LW+ ++ T N + +D + R+L ++
Sbjct: 189 RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL-----HEIS 243
Query: 302 TYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 351
T K +++ E+ T KY+ G + ++++ S Q +L
Sbjct: 244 TSKKNNL-----------EFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL 282
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 328 IYTGSSDNSVYIYDLVSGAQ--VAKLDFHNAPVRDCCW-HPIYP-MLISSSWDCNIVRW 382
+ T SSD SV I+D+ +G Q +A L H PV W HP+Y +L S S+D ++ W
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
Query: 152 TDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKV 211
D + V G I+VY + + ++ H ++ + F D T L+ S SDD ++
Sbjct: 215 VDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGTLRI 273
Query: 212 WDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262
W G + GH + I D + IS D + +LW +++
Sbjct: 274 WHG----GNGNSQNCFYGHSQSIVSASWVGDDK-VISCSMDGSVRLWSLKQ 319
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 77/207 (37%), Gaps = 32/207 (15%)
Query: 177 SLRIPAHKSDVNTVCFA-DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 235
+L + K+ C A G+ I +G ++ ++W++ G VL H I
Sbjct: 99 ALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK-----TGALLNVLNFHRAPIV 153
Query: 236 FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHP 295
+ +DG + IS + T LW++ +S + L++ S H
Sbjct: 154 SVKWNKDGTHIISMDVENVTILWNV--ISGTVMQHFELKETG--------GSSINAENHS 203
Query: 296 HDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHN 355
D SL E+ K++ G ++++Y + KL H+
Sbjct: 204 GDGSLGV---------------DVEWVDDDKFVIPGPK-GAIFVYQITEKTPTGKLIGHH 247
Query: 356 APVRDCCWHPIYPMLISSSWDCNIVRW 382
P+ ++ +L+S+S D + W
Sbjct: 248 GPISVLEFNDTNKLLLSASDDGTLRIW 274
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 89/223 (39%), Gaps = 33/223 (14%)
Query: 146 FSVKFSTDGQELVAAGSDNFIYVYDL--QANKCSLRIP-----AHKSDVNTVCFADETGH 198
FS K + D L++ D + ++ L + IP H V+ + + E
Sbjct: 31 FSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90
Query: 199 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLW 258
I S D +L ++WD R + R +GH + + D R +S G ++ KLW
Sbjct: 91 AISSSWDKTL-RLWDLRTGTTYKR----FVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145
Query: 259 DIR---KMSSNTTDNSRLRDYDWD--YRWMEYPSYARRLK--HPH------DQSLATYKG 305
+I K SS +N DW R+ A +++ P+ D L +
Sbjct: 146 NILGECKFSSAEKENHS----DWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT 201
Query: 306 HSVLRTLIRCYFSP----EYSTAQKYIYTGSSDNSVYIYDLVS 344
+ +R + + S S KYI TG D + I+D+++
Sbjct: 202 NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 24/135 (17%)
Query: 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQAN---------------KCSLRIPAHKSDVNT 189
++SV FS D +++++AG++ I ++++ C P KS
Sbjct: 121 VYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKV 180
Query: 190 VCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISN 249
FA + G D L KVW+ I H + + +G+Y +
Sbjct: 181 QPFAP---YFASVGWDGRL-KVWNTNFQIRY-----TFKAHESNVNHLSISPNGKYIATG 231
Query: 250 GKDQTTKLWDIRKMS 264
GKD+ +WDI ++
Sbjct: 232 GKDKKLLIWDILNLT 246
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 304 KGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA-------KLDFHNA 356
+GHS T I FS + + + +GS D +V I+ L Q L HN
Sbjct: 18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH 77
Query: 357 PVRDCCWHPIYPMLISSSWDCNIVRWEI 384
V D ISSSWD + W++
Sbjct: 78 FVSDLALSQENCFAISSSWDKTLRLWDL 105
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 104/297 (35%), Gaps = 75/297 (25%)
Query: 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS 204
+F + +S DG ++ +A +D I ++++ K IP G I
Sbjct: 242 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV--------------GTRI---E 284
Query: 205 DDSLCKVWDRRCFIS-------------KGRANGVLMGHLEGITFIDSRRDGRYFISNGK 251
D L +W ++ +S G + V GH + IT + S DG+ S
Sbjct: 285 DQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADA 344
Query: 252 DQTTKLWDIRKMSSN---------------TTDNSRLRDYDWDYRWMEYP---------- 286
+ WDI SN TT L WD P
Sbjct: 345 EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSK 404
Query: 287 SYARRL-KHPHDQSL---------ATYK-----GHSVLRTLIRCYFSP--EYSTAQKYIY 329
+ A +L P ++ A YK H L + Y S S ++++
Sbjct: 405 AVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVA 464
Query: 330 TGSSDNSVYIYDLVSGAQVAKLD--FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384
G D+ V++Y L SGA V+++ H A + + L+++ ++ + +
Sbjct: 465 VGGQDSKVHVYKL-SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSV 520
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 53/257 (20%), Positives = 94/257 (36%), Gaps = 39/257 (15%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G N + S DG +A E +I +++ + + A T T+ D
Sbjct: 322 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 381
Query: 98 RFLVYASICAIVNIVDVGSSARESLAN-VTEIHKGLDFSADGD------EDEFGIFS--- 147
+ + +V G + +++AN ++ GL SADGD I+S
Sbjct: 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 441
Query: 148 ------------VKFSTDGQELVAAGSDNFIYVYDLQANKCS-LRIPAHKSDVNTVCFAD 194
V S D Q + G D+ ++VY L S ++ H +++ +V F++
Sbjct: 442 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN 501
Query: 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR-------RDGRYFI 247
L+ +D S R I AN + H TF ++ D
Sbjct: 502 NGAFLV--ATDQS-------RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 552
Query: 248 SNGKDQTTKLWDIRKMS 264
+ D + +W++ K S
Sbjct: 553 TGSLDNSVIVWNMNKPS 569
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217
V G + F +V+ + + +N+V F I SGSDD+ +++ F
Sbjct: 121 VGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF 180
Query: 218 ISKGRANGVLMGHLEGITFIDSRR---DGRYFISNGKDQTTKLWD 259
K E F+ S R DG F S G D T L++
Sbjct: 181 KFKSTFG-------EHTKFVHSVRYNPDGSLFASTGGDGTIVLYN 218
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 159 AAGSDNFIYVYDLQAN---KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215
+ D + ++D ++N K S + AH ++VN + F + ++ +GS D +WD R
Sbjct: 245 SVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 304
Query: 216 CFISKGRANGVLMGHLEGITFID-SRRDGRYFISNGKDQTTKLWDIRKM 263
K + H + I + S + S+G D+ +WD+ K+
Sbjct: 305 NLKLKLHS---FESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKI 350
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/237 (19%), Positives = 91/237 (38%), Gaps = 34/237 (14%)
Query: 157 LVAAGSDNFIYVYDLQANKCSLRIPAHKS--DVNTVCFADETGHLIF-----SGSDDSLC 209
L++A D+ I ++D+ A ++ K+ +T D + HL+ S +DD
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKL 252
Query: 210 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTT 268
+WD R + ++ V H + + + ++ G D+T LWD+R +
Sbjct: 253 MIWDTRSNNTSKPSHSV-DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 311
Query: 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI 328
+D + +W PH++++ G T R ++
Sbjct: 312 SFESHKDEIFQVQWS-----------PHNETILASSG-----TDRRLNVWDLSKIGEEQS 355
Query: 329 YTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVR-WEI 384
+ D + + G H A + D W+P P +I S + NI++ W++
Sbjct: 356 PEDAEDGPPELLFIHGG--------HTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 20/117 (17%)
Query: 157 LVAAGSDNFIYVYDLQANKCSLRI------PAHKSDVNTVCF--ADETGHLIFSGSD-DS 207
+AGS NF ++DL+A K + + K ++ V + + T +GSD D
Sbjct: 181 FASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDP 240
Query: 208 LCKVWDRRCFISKGRANGVL----MGHLEGITFID-SRRDGRYFISNGKDQTTKLWD 259
+WD R AN L GH +GI +D +D +S+G+D T LW+
Sbjct: 241 SILIWDLR------NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 179 RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD-RRCFISKGRANGVLMGHL-----E 232
R H S V TV F + +++ SG ++ +WD +C S + G E
Sbjct: 108 RFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167
Query: 233 GITFIDSRRDGRYFISNGKDQTTKLWDIR 261
I+ ++ F S G +WD++
Sbjct: 168 VISLAWNQSLAHVFASAGSSNFASIWDLK 196
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 75/389 (19%), Positives = 132/389 (33%), Gaps = 97/389 (24%)
Query: 28 LPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWT 87
LP N P M ++ +++ +DG+ + AS S + W W
Sbjct: 21 LPPNAP---ACMERQLEAARYRSDGALLLGASSLSG-------RCWA--------GSLWL 62
Query: 88 ITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEI-HKGLDFSADG-------- 138
D +P++ F G +A++T + +G+ ++D
Sbjct: 63 FKDPCAAPNEGF------------CSAGVQTEAGVADLTWVGERGILVASDSGAVELWEL 110
Query: 139 DEDEFGIFS-------------VKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS 185
DE+E I S V + G + V+ D I V+DL AH +
Sbjct: 111 DENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170
Query: 186 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRY 245
V V + + S S+D+ +WD RC + G+L + +
Sbjct: 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLP-TSLAWHPQQSEV 229
Query: 246 FISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG 305
F+ ++ T L D + S + H Q +
Sbjct: 230 FVFGDENGTVSLVDTKSTSCVLSSAV------------------------HSQCVTGL-- 263
Query: 306 HSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHP 365
FSP + ++ + S D S+ + D S +++ + H VRD W P
Sbjct: 264 ----------VFSPH---SVPFLASLSEDCSLAVLD-SSLSELFRSQAHRDFVRDATWSP 309
Query: 366 I-YPMLISSSWDCNIVRWEIPGIGEAPLP 393
+ + +L + WD +V +P PLP
Sbjct: 310 LNHSLLTTVGWDHQVVHHVVP---TEPLP 335
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 19/149 (12%)
Query: 72 NWKIQKDIE-TKALRWTITDTSLSPDQ---RFLVYASICAIVNIVDVGSSARESLANVTE 127
N KDIE T + +I S SP FL+ S V +V S +++ +
Sbjct: 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG-QTIPKAQQ 83
Query: 128 IHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV 187
+H G + V +S DG ++ A D ++DL +N+ +++I H + V
Sbjct: 84 MHTG------------PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ-AIQIAQHDAPV 130
Query: 188 NTVCFADETGH-LIFSGSDDSLCKVWDRR 215
T+ + + + +GS D K WD R
Sbjct: 131 KTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 83/228 (36%), Gaps = 40/228 (17%)
Query: 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS 204
I SV + +G L S + ++D+Q K + +H + V ++ + +++ SGS
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGS 126
Query: 205 DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS 264
D R L GH + + + DGR+ S G D +W
Sbjct: 127 RSGHIHHHDVRV---AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW------ 177
Query: 265 SNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA 324
PS Q+ ++G ++ + C +
Sbjct: 178 ---------------------PSAPGEGGWVPLQTFTQHQG--AVKAVAWCPWQSNVLAT 214
Query: 325 QKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLIS 372
G+SD + I+++ SGA ++ +D H+ V W P Y LIS
Sbjct: 215 GG----GTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELIS 257
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 159 AAGSDNFIYVYDLQAN---KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215
+ D + ++D + N K S + AH ++VN + F + ++ +GS D +WD R
Sbjct: 249 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 308
Query: 216 CFISKGRANGVLMGHLEGITFID-SRRDGRYFISNGKDQTTKLWDIRKM 263
K + H + I + S + S+G D+ +WD+ K+
Sbjct: 309 NLKLKLHS---FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/237 (19%), Positives = 91/237 (38%), Gaps = 34/237 (14%)
Query: 157 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDV--NTVCFADETGHLIF-----SGSDDSLC 209
L++A D+ I ++D+ A R+ K+ +T D HL+ S +DD
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256
Query: 210 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTT 268
+WD R + + + + H + + + ++ G D+T LWD+R +
Sbjct: 257 MIWDTRNN-NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 315
Query: 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI 328
+D + +W PH++++ G T R + ++
Sbjct: 316 SFESHKDEIFQVQWS-----------PHNETILASSG-----TDRRLHVWDLSKIGEEQS 359
Query: 329 YTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVR-WEI 384
+ D + + G H A + D W+P P +I S + NI++ W++
Sbjct: 360 TEDAEDGPPELLFIHGG--------HTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 159 AAGSDNFIYVYDLQAN---KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215
+ D + ++D ++N K S + AH ++VN + F + ++ +GS D +WD R
Sbjct: 247 SVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
Query: 216 CFISKGRANGVLMGHLEGITFID-SRRDGRYFISNGKDQTTKLWDIRKM 263
K H + I + S + S+G D+ +WD+ K+
Sbjct: 307 NLKLKLH---TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKI 352
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 50/251 (19%), Positives = 98/251 (39%), Gaps = 62/251 (24%)
Query: 157 LVAAGSDNFIYVYDLQANKCSLRI-------PAHKSDVNTVCFADETGHLIFSGSDDSLC 209
L++A D+ + ++D+ A +I H + V V + L S +DD
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 210 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTT 268
+WD R + + + ++ H + + + ++ G D+T LWD+R +
Sbjct: 255 MIWDTRSNTT-SKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL----- 308
Query: 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI 328
+LK L T++ H + + ++SP T +
Sbjct: 309 ----------------------KLK------LHTFESHK--DEIFQVHWSPHNET---IL 335
Query: 329 YTGSSDNSVYIYDL--VSGAQVA--------KLDF----HNAPVRDCCWHPIYPMLISSS 374
+ +D + ++DL + Q A +L F H A + D W+P P +I S
Sbjct: 336 ASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV 395
Query: 375 WDCNIVR-WEI 384
+ NI++ W++
Sbjct: 396 SEDNIMQIWQM 406
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 159 AAGSDNFIYVYDLQAN---KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215
+ D + ++D + N K S + AH ++VN + F + ++ +GS D +WD R
Sbjct: 251 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 310
Query: 216 CFISKGRANGVLMGHLEGITFID-SRRDGRYFISNGKDQTTKLWDIRKM 263
K + H + I + S + S+G D+ +WD+ K+
Sbjct: 311 NLKLKLHS---FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 356
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/237 (19%), Positives = 91/237 (38%), Gaps = 34/237 (14%)
Query: 157 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDV--NTVCFADETGHLIF-----SGSDDSLC 209
L++A D+ I ++D+ A R+ K+ +T D HL+ S +DD
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 258
Query: 210 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTT 268
+WD R + + + + H + + + ++ G D+T LWD+R +
Sbjct: 259 MIWDTRNN-NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 317
Query: 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI 328
+D + +W PH++++ G T R + ++
Sbjct: 318 SFESHKDEIFQVQWS-----------PHNETILASSG-----TDRRLHVWDLSKIGEEQS 361
Query: 329 YTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVR-WEI 384
+ D + + G H A + D W+P P +I S + NI++ W++
Sbjct: 362 TEDAEDGPPELLFIHGG--------HTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 159 AAGSDNFIYVYDLQAN---KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215
+ D + ++D ++N K S + AH ++VN + F + ++ +GS D +WD R
Sbjct: 247 SVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
Query: 216 CFISKGRANGVLMGHLEGITFID-SRRDGRYFISNGKDQTTKLWDIRKM 263
K H + I + S + S+G D+ +WD+ K+
Sbjct: 307 NLKLKLH---TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKI 352
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 49/247 (19%), Positives = 94/247 (38%), Gaps = 61/247 (24%)
Query: 157 LVAAGSDNFIYVYDLQANKCSLRI-------PAHKSDVNTVCFADETGHLIFSGSDDSLC 209
L++A D+ + ++D+ A +I H + V V + L S +DD
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 210 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTT 268
+WD R + + + ++ H + + + ++ G D+T LWD+R +
Sbjct: 255 XIWDTRSNTT-SKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL----- 308
Query: 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI 328
+LK L T++ H + + ++SP T +
Sbjct: 309 ----------------------KLK------LHTFESHK--DEIFQVHWSPHNET---IL 335
Query: 329 YTGSSDNSVYIYDL--VSGAQVA--------KLDF----HNAPVRDCCWHPIYPMLISSS 374
+ +D + ++DL + Q A +L F H A + D W+P P +I S
Sbjct: 336 ASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV 395
Query: 375 WDCNIVR 381
+ NI +
Sbjct: 396 SEDNIXQ 402
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 327 YIYTGSSDNSVYIYDLVSGAQ----VAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 382
Y+ T S D SV+I++ + ++ L H+ V+ WHP +L SSS+D + W
Sbjct: 121 YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180
Query: 383 E 383
+
Sbjct: 181 K 181
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 20/169 (11%)
Query: 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSG 203
GI + + +LV+ D+F + L AHK + +V + T L+ +G
Sbjct: 25 GILATGSTDRKIKLVSVKYDDFTLIDVLDET-------AHKKAIRSVAWRPHTS-LLAAG 76
Query: 204 SDDSLCKVWDR-----RCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLW 258
S DS +W + R F A ++ GH + + DG Y + +D++ +W
Sbjct: 77 SFDSTVSIWAKEESADRTFEMDLLA--IIEGHENEVKGVAWSNDGYYLATCSRDKSVWIW 134
Query: 259 DIRKMSSNTTDNSRLRDYDWDYR---WMEYPSYARRLKHPHDQSLATYK 304
+ + S L+++ D + W +PS A +D ++ +K
Sbjct: 135 ETDESGEEYECISVLQEHSQDVKHVIW--HPSEALLASSSYDDTVRIWK 181
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 159 AAGSDNFIYVYDLQAN---KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215
+ D + ++D + N K S + AH ++VN + F + ++ +GS D +WD R
Sbjct: 253 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 312
Query: 216 CFISKGRANGVLMGHLEGITFID-SRRDGRYFISNGKDQTTKLWDIRKM 263
K + H + I + S + S+G D+ +WD+ K+
Sbjct: 313 NLKLKLHS---FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 358
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/237 (19%), Positives = 91/237 (38%), Gaps = 34/237 (14%)
Query: 157 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDV--NTVCFADETGHLIF-----SGSDDSLC 209
L++A D+ I ++D+ A R+ K+ +T D HL+ S +DD
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 260
Query: 210 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTT 268
+WD R + + + + H + + + ++ G D+T LWD+R +
Sbjct: 261 MIWDTRNN-NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 319
Query: 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI 328
+D + +W PH++++ G T R + ++
Sbjct: 320 SFESHKDEIFQVQWS-----------PHNETILASSG-----TDRRLHVWDLSKIGEEQS 363
Query: 329 YTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVR-WEI 384
+ D + + G H A + D W+P P +I S + NI++ W++
Sbjct: 364 TEDAEDGPPELLFIHGG--------HTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/247 (20%), Positives = 90/247 (36%), Gaps = 42/247 (17%)
Query: 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS 204
I SV + +G L S + ++D+Q K + +H + V ++ + +++ SGS
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGS 206
Query: 205 DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS 264
D R L GH + + + DGR+ S G D +W
Sbjct: 207 RSGHIHHHDVRV---AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW------ 257
Query: 265 SNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA 324
PS Q+ ++G ++ + C +
Sbjct: 258 ---------------------PSAPGEGGWVPLQTFTQHQG--AVKAVAWCPWQSNVLAT 294
Query: 325 QKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSW--DCNIVRW 382
G+SD + I+++ SGA ++ +D H+ V W P Y LIS +V W
Sbjct: 295 GG----GTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIW 349
Query: 383 EIPGIGE 389
+ P + +
Sbjct: 350 KYPTMAK 356
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 315 CYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK----LDFHNAPVRDCCWHPIYPML 370
C +P++ I S + + L +V K + H APV D W P +
Sbjct: 40 CAVNPKF---MALIXEASGGGAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNV 96
Query: 371 ISS-SWDCNIVRWEIPGIG 388
I+S S DC ++ WEIP G
Sbjct: 97 IASGSEDCTVMVWEIPDGG 115
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 328 IYTGSSDNSVYIYDLVSGA-------QVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNI 379
I +GS D +V ++++ G V L+ H V WHP +L+S+ D I
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVI 156
Query: 380 VRWEIPGIGEAPL 392
+ W++ G G A L
Sbjct: 157 LVWDV-GTGAAVL 168
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/247 (20%), Positives = 91/247 (36%), Gaps = 42/247 (17%)
Query: 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS 204
I SV + +G L S + ++D+Q K + +H + V ++ + +++ SGS
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGS 217
Query: 205 DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS 264
D R L GH + + + DGR+ S G D +W
Sbjct: 218 RSGHIHHHDVRV---AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW------ 268
Query: 265 SNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA 324
PS Q+ ++G ++ + C + +
Sbjct: 269 ---------------------PSAPGEGGWVPLQTFTQHQG--AVKAVAWC----PWQSN 301
Query: 325 QKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSW--DCNIVRW 382
G+SD + I+++ SGA ++ +D H+ V W P Y LIS +V W
Sbjct: 302 VLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIW 360
Query: 383 EIPGIGE 389
+ P + +
Sbjct: 361 KYPTMAK 367
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 152 TDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKV 211
+DG + V+ G D + V+DL AH S+VN V + S +D +
Sbjct: 149 SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILL 208
Query: 212 WDRR 215
WD R
Sbjct: 209 WDTR 212
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 354 HNAPVRDCCWHPIYPMLISS-SWDCNIVRWEIPGIG 388
H APV D W P +I+S S DC ++ WEIP G
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 328 IYTGSSDNSVYIYDLVSGA-------QVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNI 379
I +GS D +V ++++ G V L+ H V WHP +L+S+ D I
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156
Query: 380 VRWEIPGIGEAPL 392
+ W++ G G A L
Sbjct: 157 LVWDV-GTGAAVL 168
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 320 EYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK-LDFHNAPVRDCCWHPIYPMLISSSWDCN 378
E + + TGS D +++IY + ++ K L+ H V + W L+SS D
Sbjct: 548 EEEIEEDLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWE-TPSTLVSSGADAC 606
Query: 379 IVRWEI 384
I RW +
Sbjct: 607 IKRWNV 612
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 320 EYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK-LDFHNAPVRDCCWHPIYPMLISSSWDCN 378
E + + TGS D +++IY + ++ K L+ H V + W L+SS D
Sbjct: 548 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE-TPSTLVSSGADAC 606
Query: 379 IVRWEI 384
I RW +
Sbjct: 607 IKRWNV 612
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 147 SVKFSTDGQELVAAGSD---NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSG 203
SV + ++ + L+ G D N + ++ + H+ +V ++ F D ++ SG
Sbjct: 64 SVCYDSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQD---GVVISG 120
Query: 204 SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263
S D KVW + +A+ + + ++F +++ F++ D+T KLW K+
Sbjct: 121 SWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENK-----FLTASADKTIKLWQNDKV 175
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 187 VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR-ANGVLMGHLEGITFIDSRRDGRY 245
+N+VC+ E L+F G D + V F + G L+GH + + S +DG
Sbjct: 62 LNSVCYDSEKELLLFGGKDTXINGV---PLFATSGEDPLYTLIGHQGNVCSL-SFQDG-V 116
Query: 246 FISNGKDQTTKLWDIRKMSSN-TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK 304
IS D+T K+W + N N+ + WD + + + S + L D+++ ++
Sbjct: 117 VISGSWDKTAKVWKEGSLVYNLQAHNASV----WDAKVVSF-SENKFLTASADKTIKLWQ 171
Query: 305 GHSVLRTL 312
V++T
Sbjct: 172 NDKVIKTF 179
>pdb|1VRX|A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant
Y245g
pdb|1VRX|B Chain B, Endocellulase E1 From Acidothermus Cellulolyticus Mutant
Y245g
Length = 358
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 300 LATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ-------VAKLD 352
+ Y G LR ++ + P+ S YT S + +I DL + AQ V D
Sbjct: 100 IVAYAGQIGLRIILDRH-RPDCSGQSALWYTSSVSEATWISDLQALAQRYKGNPTVVGFD 158
Query: 353 FHNAPVRDCCW 363
HN P CW
Sbjct: 159 LHNEPHDPACW 169
>pdb|1ECE|A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic
Domain In Complex With A Cellotetraose
pdb|1ECE|B Chain B, Acidothermus Cellulolyticus Endocellulase E1 Catalytic
Domain In Complex With A Cellotetraose
Length = 358
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 300 LATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ-------VAKLD 352
+ Y G LR ++ + P+ S YT S + +I DL + AQ V D
Sbjct: 100 IVAYAGQIGLRIILDRH-RPDCSGQSALWYTSSVSEATWISDLQALAQRYKGNPTVVGFD 158
Query: 353 FHNAPVRDCCW 363
HN P CW
Sbjct: 159 LHNEPHDPACW 169
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 321 YSTAQKYIYTGSSDNSVYIYDLVSGAQ---VAKLDFHNAPVRDCCWHPIYPMLISSSWD 376
++ + + T S D SV+++++ + V+ L+ H V+ WHP +L S+S+D
Sbjct: 113 WAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,376,258
Number of Sequences: 62578
Number of extensions: 522883
Number of successful extensions: 2038
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1177
Number of HSP's gapped (non-prelim): 443
length of query: 409
length of database: 14,973,337
effective HSP length: 101
effective length of query: 308
effective length of database: 8,652,959
effective search space: 2665111372
effective search space used: 2665111372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)