Query 015301
Match_columns 409
No_of_seqs 828 out of 1441
Neff 12.3
Searched_HMMs 46136
Date Fri Mar 29 05:01:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015301.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015301hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 8.8E-59 1.9E-63 358.8 27.9 319 4-383 118-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 6.8E-57 1.5E-61 348.4 26.7 294 34-389 109-443 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 3.4E-53 7.3E-58 331.8 23.1 284 37-383 172-458 (459)
4 KOG0286 G-protein beta subunit 100.0 3.6E-51 7.8E-56 305.7 31.8 297 32-383 47-343 (343)
5 KOG0272 U4/U6 small nuclear ri 100.0 3.6E-48 7.8E-53 303.6 21.9 273 6-341 180-458 (459)
6 KOG0293 WD40 repeat-containing 100.0 3.7E-46 7.9E-51 291.8 24.9 305 25-387 209-515 (519)
7 KOG0291 WD40-repeat-containing 100.0 7.3E-44 1.6E-48 299.1 37.4 338 5-387 100-510 (893)
8 KOG0279 G protein beta subunit 100.0 1.8E-44 4E-49 268.1 29.9 290 34-385 9-313 (315)
9 KOG0315 G-protein beta subunit 100.0 1.1E-44 2.3E-49 265.0 28.1 282 53-391 11-294 (311)
10 KOG0265 U5 snRNP-specific prot 100.0 6.2E-45 1.3E-49 273.3 26.9 295 34-383 41-336 (338)
11 KOG0645 WD40 repeat protein [G 100.0 3.4E-43 7.3E-48 260.3 32.2 292 33-385 7-311 (312)
12 KOG0273 Beta-transducin family 100.0 1.2E-43 2.5E-48 282.2 29.0 294 35-390 173-487 (524)
13 KOG0284 Polyadenylation factor 100.0 1.4E-44 3E-49 282.4 21.0 287 39-388 95-383 (464)
14 KOG0295 WD40 repeat-containing 100.0 9E-44 1.9E-48 273.9 25.0 292 31-384 99-405 (406)
15 KOG0318 WD40 repeat stress pro 100.0 6.8E-42 1.5E-46 275.9 35.4 345 5-390 151-565 (603)
16 KOG0291 WD40-repeat-containing 100.0 3.7E-42 8.1E-47 288.9 34.9 340 4-386 310-710 (893)
17 KOG0273 Beta-transducin family 100.0 8.7E-43 1.9E-47 277.3 28.7 279 41-385 236-523 (524)
18 KOG0282 mRNA splicing factor [ 100.0 9E-45 1.9E-49 289.5 16.9 301 25-383 199-503 (503)
19 KOG0319 WD40-repeat-containing 100.0 4.3E-43 9.3E-48 293.7 27.7 343 6-390 110-582 (775)
20 KOG0285 Pleiotropic regulator 100.0 3.5E-42 7.5E-47 264.8 28.3 289 34-387 145-441 (460)
21 KOG0266 WD40 repeat-containing 100.0 4.2E-42 9E-47 297.8 32.0 293 35-385 153-454 (456)
22 KOG0296 Angio-associated migra 100.0 4.5E-41 9.8E-46 259.2 30.1 315 6-385 69-398 (399)
23 KOG0315 G-protein beta subunit 100.0 8.3E-41 1.8E-45 244.7 29.2 293 14-364 11-309 (311)
24 KOG0263 Transcription initiati 100.0 5.5E-43 1.2E-47 295.6 20.1 282 34-389 372-653 (707)
25 cd00200 WD40 WD40 domain, foun 100.0 3.2E-40 6.9E-45 275.2 36.1 287 34-383 3-289 (289)
26 KOG0316 Conserved WD40 repeat- 100.0 4.2E-41 9E-46 244.3 26.3 292 28-385 5-299 (307)
27 KOG0318 WD40 repeat stress pro 100.0 8E-39 1.7E-43 258.2 38.3 380 8-389 25-521 (603)
28 KOG0286 G-protein beta subunit 100.0 5.8E-40 1.3E-44 245.8 28.4 277 4-341 58-343 (343)
29 PLN00181 protein SPA1-RELATED; 100.0 1.4E-39 3E-44 303.2 37.9 295 35-384 478-792 (793)
30 KOG0279 G protein beta subunit 100.0 2.9E-39 6.3E-44 240.5 27.7 254 78-389 8-266 (315)
31 KOG0319 WD40-repeat-containing 100.0 9.6E-40 2.1E-44 273.8 26.3 298 30-387 313-621 (775)
32 KOG0263 Transcription initiati 100.0 8.8E-40 1.9E-44 276.4 26.3 236 4-262 381-650 (707)
33 KOG0284 Polyadenylation factor 100.0 1.2E-40 2.7E-45 260.4 17.2 276 5-342 100-379 (464)
34 KOG0296 Angio-associated migra 100.0 2.2E-38 4.7E-43 244.4 26.2 307 30-390 54-361 (399)
35 KOG0643 Translation initiation 100.0 2.1E-38 4.4E-43 234.6 23.9 290 33-386 3-318 (327)
36 KOG0278 Serine/threonine kinas 100.0 5E-39 1.1E-43 235.7 19.1 293 31-390 5-302 (334)
37 KOG0276 Vesicle coat complex C 100.0 5.6E-38 1.2E-42 258.6 25.5 286 34-381 7-295 (794)
38 KOG0306 WD40-repeat-containing 100.0 7.5E-37 1.6E-41 257.1 31.7 346 5-389 69-584 (888)
39 KOG0275 Conserved WD40 repeat- 100.0 6.8E-39 1.5E-43 244.2 17.3 287 38-383 211-507 (508)
40 KOG0640 mRNA cleavage stimulat 100.0 9.3E-38 2E-42 236.2 22.4 299 34-385 106-426 (430)
41 KOG0281 Beta-TrCP (transducin 100.0 1.3E-38 2.8E-43 244.6 17.2 274 39-389 196-481 (499)
42 KOG0265 U5 snRNP-specific prot 100.0 1.2E-36 2.6E-41 228.9 27.0 278 4-341 50-336 (338)
43 KOG1407 WD40 repeat protein [F 100.0 7.9E-37 1.7E-41 225.5 25.4 279 34-376 14-293 (313)
44 KOG0772 Uncharacterized conser 100.0 2.9E-37 6.4E-42 248.8 23.1 317 25-385 152-487 (641)
45 KOG0266 WD40 repeat-containing 100.0 2.4E-36 5.1E-41 262.0 29.9 279 4-343 162-454 (456)
46 KOG0316 Conserved WD40 repeat- 100.0 7.8E-37 1.7E-41 222.2 21.5 248 80-389 12-261 (307)
47 KOG0295 WD40 repeat-containing 100.0 2.5E-37 5.5E-42 238.5 20.1 256 81-390 104-369 (406)
48 KOG0306 WD40-repeat-containing 100.0 1.2E-35 2.6E-40 249.9 31.5 287 34-386 367-665 (888)
49 KOG0313 Microtubule binding pr 100.0 1.1E-35 2.4E-40 230.7 27.8 290 35-386 100-419 (423)
50 KOG0288 WD40 repeat protein Ti 100.0 8.9E-38 1.9E-42 244.8 16.2 302 21-383 156-459 (459)
51 KOG1446 Histone H3 (Lys4) meth 100.0 1.3E-34 2.7E-39 220.0 32.6 297 33-389 7-307 (311)
52 KOG0277 Peroxisomal targeting 100.0 2.8E-36 6.1E-41 221.7 22.9 283 44-384 12-308 (311)
53 KOG0285 Pleiotropic regulator 100.0 1.4E-36 3.1E-41 234.0 21.0 247 81-389 147-393 (460)
54 KOG0645 WD40 repeat protein [G 100.0 9.5E-35 2.1E-39 215.6 29.7 281 5-343 18-311 (312)
55 KOG0310 Conserved WD40 repeat- 100.0 1.6E-35 3.4E-40 237.2 26.5 289 38-390 24-314 (487)
56 KOG0292 Vesicle coat complex C 100.0 6.7E-36 1.4E-40 255.9 25.8 294 36-387 5-323 (1202)
57 KOG0281 Beta-TrCP (transducin 100.0 1.9E-37 4.1E-42 238.2 14.6 240 85-393 197-436 (499)
58 KOG1408 WD40 repeat protein [F 100.0 9.6E-36 2.1E-40 249.5 25.7 239 141-386 458-714 (1080)
59 KOG0283 WD40 repeat-containing 100.0 3.7E-36 8E-41 256.6 23.1 309 35-388 261-579 (712)
60 KOG0293 WD40 repeat-containing 100.0 8.6E-36 1.9E-40 233.9 22.2 275 7-344 230-514 (519)
61 KOG0300 WD40 repeat-containing 100.0 2.4E-35 5.1E-40 224.2 21.1 305 34-387 142-478 (481)
62 KOG2096 WD40 repeat protein [G 100.0 1.7E-34 3.6E-39 219.4 25.0 311 35-383 81-400 (420)
63 KOG0276 Vesicle coat complex C 100.0 2.3E-35 5E-40 243.3 22.0 250 84-390 12-262 (794)
64 cd00200 WD40 WD40 domain, foun 100.0 1.7E-33 3.6E-38 234.7 33.6 276 3-341 11-289 (289)
65 KOG0292 Vesicle coat complex C 100.0 8.7E-34 1.9E-38 243.1 31.0 348 5-387 13-399 (1202)
66 PLN00181 protein SPA1-RELATED; 100.0 2.4E-33 5.1E-38 261.6 36.8 291 4-342 486-792 (793)
67 KOG0274 Cdc4 and related F-box 100.0 5.2E-34 1.1E-38 246.2 29.5 286 33-390 200-487 (537)
68 KOG0305 Anaphase promoting com 100.0 6.3E-34 1.4E-38 236.6 28.5 280 45-391 182-467 (484)
69 PTZ00421 coronin; Provisional 100.0 8.7E-33 1.9E-37 238.6 34.9 298 37-387 17-333 (493)
70 KOG4283 Transcription-coupled 100.0 4.4E-34 9.6E-39 214.8 23.1 300 34-384 37-364 (397)
71 KOG0268 Sof1-like rRNA process 100.0 3.9E-35 8.4E-40 226.4 16.6 288 34-389 60-349 (433)
72 KOG0973 Histone transcription 100.0 5.5E-34 1.2E-38 249.8 25.8 311 36-387 9-357 (942)
73 KOG0641 WD40 repeat protein [G 100.0 5.2E-32 1.1E-36 196.3 31.5 295 35-385 27-349 (350)
74 KOG0299 U3 snoRNP-associated p 100.0 4.9E-33 1.1E-37 221.3 25.7 302 34-386 136-457 (479)
75 KOG0289 mRNA splicing factor [ 100.0 8.1E-33 1.7E-37 218.6 26.6 282 41-384 220-505 (506)
76 KOG0647 mRNA export protein (c 100.0 1.7E-32 3.6E-37 206.9 26.9 280 39-373 26-311 (347)
77 KOG0275 Conserved WD40 repeat- 100.0 1.6E-33 3.6E-38 214.9 17.6 256 85-390 213-472 (508)
78 KOG0282 mRNA splicing factor [ 100.0 9.1E-34 2E-38 226.9 16.6 253 78-389 207-466 (503)
79 KOG0277 Peroxisomal targeting 100.0 1.9E-32 4.1E-37 201.6 21.8 245 39-342 59-308 (311)
80 KOG0313 Microtubule binding pr 100.0 3.4E-32 7.3E-37 211.4 23.9 286 13-342 115-417 (423)
81 KOG0301 Phospholipase A2-activ 100.0 1.2E-31 2.6E-36 223.9 27.8 284 33-389 7-292 (745)
82 KOG1036 Mitotic spindle checkp 100.0 7.4E-31 1.6E-35 198.7 28.5 279 40-375 13-294 (323)
83 KOG0294 WD40 repeat-containing 100.0 5.2E-31 1.1E-35 200.1 26.7 268 55-388 4-284 (362)
84 KOG1446 Histone H3 (Lys4) meth 100.0 8.5E-31 1.8E-35 199.3 28.0 249 85-390 14-267 (311)
85 PTZ00421 coronin; Provisional 100.0 3E-31 6.5E-36 229.0 29.0 257 87-388 22-293 (493)
86 KOG0639 Transducin-like enhanc 100.0 5E-32 1.1E-36 218.3 21.5 287 36-384 415-703 (705)
87 KOG0305 Anaphase promoting com 100.0 5.7E-31 1.2E-35 219.1 27.3 276 7-345 183-463 (484)
88 KOG0278 Serine/threonine kinas 100.0 1.5E-32 3.2E-37 201.9 15.7 277 6-348 19-302 (334)
89 KOG0299 U3 snoRNP-associated p 100.0 1.5E-31 3.2E-36 213.0 22.1 264 79-389 136-414 (479)
90 KOG2055 WD40 repeat protein [G 100.0 3.9E-31 8.4E-36 210.7 24.1 293 40-385 213-512 (514)
91 KOG1407 WD40 repeat protein [F 100.0 3.5E-30 7.6E-35 190.5 26.8 266 3-334 22-293 (313)
92 KOG0264 Nucleosome remodeling 100.0 2.1E-31 4.6E-36 211.9 21.4 269 38-386 122-405 (422)
93 PTZ00420 coronin; Provisional 100.0 1.1E-29 2.3E-34 220.4 33.6 257 58-368 50-319 (568)
94 KOG4328 WD40 protein [Function 100.0 1.1E-30 2.5E-35 207.8 24.4 309 33-385 179-495 (498)
95 KOG0274 Cdc4 and related F-box 100.0 2.3E-30 4.9E-35 223.8 27.9 260 24-355 232-494 (537)
96 KOG0640 mRNA cleavage stimulat 100.0 2.2E-31 4.7E-36 201.9 18.9 282 4-342 115-425 (430)
97 KOG1332 Vesicle coat complex C 100.0 1.9E-31 4.1E-36 195.3 17.5 257 35-343 6-286 (299)
98 KOG0641 WD40 repeat protein [G 100.0 3.7E-29 8.1E-34 181.5 27.8 270 84-391 31-309 (350)
99 KOG0308 Conserved WD40 repeat- 100.0 4E-31 8.6E-36 219.3 19.2 291 38-386 19-328 (735)
100 KOG2106 Uncharacterized conser 100.0 8.5E-29 1.9E-33 199.7 31.7 363 3-386 106-522 (626)
101 KOG0283 WD40 repeat-containing 100.0 2.2E-30 4.8E-35 221.6 23.4 204 35-264 364-579 (712)
102 KOG0310 Conserved WD40 repeat- 100.0 6.3E-30 1.4E-34 205.3 23.9 274 4-343 29-309 (487)
103 PTZ00420 coronin; Provisional 100.0 7.6E-29 1.6E-33 215.1 32.5 230 103-387 50-295 (568)
104 KOG0643 Translation initiation 100.0 2.2E-29 4.9E-34 186.9 24.4 295 5-344 14-318 (327)
105 KOG0289 mRNA splicing factor [ 100.0 1.5E-29 3.2E-34 200.2 24.2 274 10-342 228-505 (506)
106 KOG1539 WD repeat protein [Gen 100.0 1E-28 2.2E-33 210.8 31.0 316 19-384 181-647 (910)
107 KOG2048 WD40 repeat protein [G 100.0 6.1E-28 1.3E-32 201.5 33.9 247 4-262 72-320 (691)
108 KOG0308 Conserved WD40 repeat- 100.0 4.6E-30 1E-34 213.1 21.1 243 11-263 35-287 (735)
109 KOG1063 RNA polymerase II elon 100.0 6.9E-29 1.5E-33 207.6 25.9 346 7-385 322-763 (764)
110 KOG0973 Histone transcription 100.0 2.7E-29 5.8E-34 220.6 24.6 262 84-387 12-314 (942)
111 KOG0269 WD40 repeat-containing 100.0 6.7E-30 1.5E-34 216.2 19.4 293 41-387 40-342 (839)
112 KOG1274 WD40 repeat protein [G 100.0 2E-28 4.3E-33 211.2 28.5 280 37-382 10-297 (933)
113 KOG0650 WD40 repeat nucleolar 100.0 6.8E-29 1.5E-33 204.3 24.5 305 28-382 388-732 (733)
114 KOG1408 WD40 repeat protein [F 100.0 1.3E-28 2.8E-33 207.1 26.6 375 5-389 41-538 (1080)
115 KOG0294 WD40 repeat-containing 100.0 3.2E-28 6.9E-33 185.0 25.5 263 33-363 36-305 (362)
116 KOG0772 Uncharacterized conser 100.0 2.1E-29 4.6E-34 203.7 20.0 266 79-389 161-449 (641)
117 KOG1063 RNA polymerase II elon 100.0 2.1E-28 4.7E-33 204.7 26.5 370 5-389 149-606 (764)
118 KOG0647 mRNA export protein (c 100.0 1.7E-28 3.7E-33 185.4 23.5 244 84-388 26-284 (347)
119 KOG1273 WD40 repeat protein [G 100.0 3.8E-28 8.2E-33 184.7 24.5 289 43-386 26-323 (405)
120 KOG0288 WD40 repeat protein Ti 100.0 3.7E-30 8.1E-35 202.3 13.3 250 80-391 170-423 (459)
121 KOG2106 Uncharacterized conser 100.0 2.1E-27 4.5E-32 191.8 28.9 333 5-384 250-625 (626)
122 KOG0321 WD40 repeat-containing 100.0 1.5E-28 3.3E-33 203.7 22.9 296 46-391 55-397 (720)
123 KOG2445 Nuclear pore complex c 100.0 6.6E-28 1.4E-32 182.7 23.8 281 36-385 9-318 (361)
124 KOG0646 WD40 repeat protein [G 100.0 3.2E-28 6.9E-33 194.5 23.2 271 58-388 13-310 (476)
125 KOG1036 Mitotic spindle checkp 100.0 1.2E-27 2.7E-32 181.4 25.1 242 85-390 13-267 (323)
126 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 1.5E-26 3.3E-31 193.9 33.6 276 52-389 1-283 (300)
127 KOG2919 Guanine nucleotide-bin 100.0 7.1E-28 1.5E-32 183.9 22.3 282 43-376 52-361 (406)
128 KOG1332 Vesicle coat complex C 100.0 4E-28 8.7E-33 178.0 17.6 258 83-387 9-288 (299)
129 KOG1274 WD40 repeat protein [G 100.0 5.2E-27 1.1E-31 202.6 27.1 251 83-387 11-264 (933)
130 KOG0646 WD40 repeat protein [G 100.0 2.2E-27 4.7E-32 189.8 21.6 287 53-384 51-349 (476)
131 KOG0268 Sof1-like rRNA process 100.0 4.4E-28 9.6E-33 187.7 16.4 275 6-348 71-350 (433)
132 KOG4283 Transcription-coupled 100.0 2E-27 4.3E-32 179.2 19.5 237 83-394 41-285 (397)
133 KOG0639 Transducin-like enhanc 100.0 5.3E-28 1.1E-32 195.2 17.1 250 83-390 417-668 (705)
134 KOG2055 WD40 repeat protein [G 100.0 1.7E-26 3.7E-31 184.5 24.6 285 3-343 215-512 (514)
135 KOG2048 WD40 repeat protein [G 100.0 7.7E-26 1.7E-30 189.1 29.2 283 39-386 24-320 (691)
136 KOG0267 Microtubule severing p 100.0 5.6E-29 1.2E-33 209.2 10.5 255 53-376 5-259 (825)
137 KOG0264 Nucleosome remodeling 100.0 2.8E-27 6E-32 188.6 19.4 217 33-262 170-405 (422)
138 KOG0300 WD40 repeat-containing 100.0 6.3E-27 1.4E-31 178.6 19.7 255 79-394 142-437 (481)
139 KOG0301 Phospholipase A2-activ 100.0 6.5E-27 1.4E-31 195.9 21.3 242 80-388 9-252 (745)
140 KOG1539 WD repeat protein [Gen 100.0 7.9E-26 1.7E-30 193.4 27.6 327 43-389 162-610 (910)
141 KOG0269 WD40 repeat-containing 100.0 2.9E-27 6.3E-32 200.4 16.6 248 87-387 41-298 (839)
142 KOG1188 WD40 repeat protein [G 99.9 4.5E-26 9.7E-31 175.3 19.6 290 53-386 41-347 (376)
143 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.2E-24 9.1E-29 179.2 33.0 263 34-365 25-300 (300)
144 KOG1034 Transcriptional repres 99.9 2.1E-25 4.6E-30 170.8 22.2 308 35-385 33-383 (385)
145 KOG0267 Microtubule severing p 99.9 1.2E-27 2.7E-32 201.2 9.1 201 142-387 28-228 (825)
146 KOG0270 WD40 repeat-containing 99.9 4.4E-25 9.4E-30 175.6 21.8 299 44-389 129-453 (463)
147 KOG1273 WD40 repeat protein [G 99.9 2.4E-24 5.2E-29 164.2 24.1 285 4-344 26-323 (405)
148 KOG0307 Vesicle coat complex C 99.9 1.7E-26 3.6E-31 204.3 14.3 292 45-388 11-330 (1049)
149 KOG0302 Ribosome Assembly prot 99.9 6.2E-25 1.4E-29 171.2 21.0 214 35-262 146-379 (440)
150 KOG1009 Chromatin assembly com 99.9 1.7E-24 3.7E-29 170.4 23.2 321 40-387 13-374 (434)
151 KOG0270 WD40 repeat-containing 99.9 2.9E-25 6.3E-30 176.6 18.6 251 42-348 175-454 (463)
152 KOG4227 WD40 repeat protein [G 99.9 1.6E-24 3.5E-29 170.2 20.9 304 35-385 51-387 (609)
153 KOG1445 Tumor-specific antigen 99.9 1.3E-24 2.8E-29 181.0 21.2 134 35-183 74-212 (1012)
154 KOG4378 Nuclear protein COP1 [ 99.9 1.7E-24 3.7E-29 174.9 21.3 284 22-367 14-305 (673)
155 KOG0322 G-protein beta subunit 99.9 2.6E-25 5.5E-30 165.2 14.8 299 28-384 2-322 (323)
156 KOG2096 WD40 repeat protein [G 99.9 1.4E-23 3.1E-28 160.3 23.7 279 4-341 89-400 (420)
157 KOG1538 Uncharacterized conser 99.9 2.9E-24 6.3E-29 179.9 21.3 269 5-343 16-293 (1081)
158 KOG0307 Vesicle coat complex C 99.9 2.1E-25 4.5E-30 197.4 14.5 251 40-346 64-330 (1049)
159 KOG1445 Tumor-specific antigen 99.9 6.7E-24 1.5E-28 176.7 21.8 205 143-389 628-848 (1012)
160 KOG0321 WD40 repeat-containing 99.9 4.2E-24 9E-29 177.7 20.5 267 89-393 53-355 (720)
161 KOG1007 WD repeat protein TSSC 99.9 9.9E-24 2.1E-28 158.9 19.8 285 35-386 58-362 (370)
162 KOG0302 Ribosome Assembly prot 99.9 4.3E-24 9.3E-29 166.6 18.3 241 5-259 167-436 (440)
163 KOG1517 Guanine nucleotide bin 99.9 4.8E-23 1E-27 181.0 25.1 310 36-388 1060-1384(1387)
164 KOG1334 WD40 repeat protein [G 99.9 2E-24 4.4E-29 174.0 14.2 319 34-390 136-471 (559)
165 KOG2445 Nuclear pore complex c 99.9 3.1E-22 6.8E-27 152.2 24.4 256 4-262 16-319 (361)
166 KOG1310 WD40 repeat protein [G 99.9 6.5E-23 1.4E-27 168.0 22.2 225 31-262 41-304 (758)
167 KOG4378 Nuclear protein COP1 [ 99.9 2.2E-23 4.7E-28 168.6 19.1 270 61-390 11-285 (673)
168 KOG1538 Uncharacterized conser 99.9 5E-23 1.1E-27 172.6 20.4 276 42-386 14-294 (1081)
169 KOG1587 Cytoplasmic dynein int 99.9 5.6E-22 1.2E-26 170.6 26.6 281 62-393 222-524 (555)
170 KOG1963 WD40 repeat protein [G 99.9 6.9E-21 1.5E-25 164.6 32.2 329 4-387 163-540 (792)
171 KOG4328 WD40 protein [Function 99.9 2.6E-22 5.7E-27 160.6 20.4 254 83-388 184-453 (498)
172 KOG4497 Uncharacterized conser 99.9 1.7E-22 3.7E-27 155.2 18.5 353 6-394 13-400 (447)
173 KOG2919 Guanine nucleotide-bin 99.9 1.3E-21 2.8E-26 150.0 22.3 210 40-263 104-329 (406)
174 COG2319 FOG: WD40 repeat [Gene 99.9 9.1E-20 2E-24 161.7 36.3 292 35-388 60-362 (466)
175 KOG0649 WD40 repeat protein [G 99.9 1.7E-20 3.8E-25 138.2 25.7 284 42-383 12-314 (325)
176 KOG1034 Transcriptional repres 99.9 4.4E-22 9.5E-27 152.8 17.0 253 7-261 95-383 (385)
177 KOG1523 Actin-related protein 99.9 5.2E-21 1.1E-25 146.5 22.1 212 39-264 9-239 (361)
178 KOG0290 Conserved WD40 repeat- 99.9 5.1E-21 1.1E-25 144.6 21.7 290 41-382 45-362 (364)
179 PRK11028 6-phosphogluconolacto 99.9 4E-20 8.7E-25 156.1 29.5 281 55-386 5-305 (330)
180 KOG0642 Cell-cycle nuclear pro 99.9 7.4E-22 1.6E-26 162.2 16.5 272 34-355 288-573 (577)
181 KOG2110 Uncharacterized conser 99.9 5.1E-19 1.1E-23 138.3 31.1 280 40-387 5-332 (391)
182 KOG0290 Conserved WD40 repeat- 99.9 8.3E-21 1.8E-25 143.4 20.4 254 85-389 44-322 (364)
183 KOG0303 Actin-binding protein 99.9 6.9E-21 1.5E-25 149.8 20.6 206 138-388 77-297 (472)
184 KOG1963 WD40 repeat protein [G 99.9 6.6E-19 1.4E-23 152.6 34.0 341 5-389 20-491 (792)
185 KOG0303 Actin-binding protein 99.9 4.9E-21 1.1E-25 150.6 18.7 211 35-264 76-297 (472)
186 KOG1587 Cytoplasmic dynein int 99.9 3.5E-20 7.6E-25 159.7 25.3 278 22-344 224-517 (555)
187 KOG1240 Protein kinase contain 99.9 2.2E-20 4.8E-25 166.9 24.6 317 35-383 1043-1431(1431)
188 KOG0650 WD40 repeat nucleolar 99.9 1.5E-20 3.2E-25 155.8 21.6 289 3-340 402-732 (733)
189 COG2319 FOG: WD40 repeat [Gene 99.9 3.6E-18 7.8E-23 151.4 38.9 291 31-386 146-443 (466)
190 KOG0642 Cell-cycle nuclear pro 99.9 3.2E-21 6.9E-26 158.5 15.8 248 139-387 291-563 (577)
191 KOG0771 Prolactin regulatory e 99.9 9.1E-20 2E-24 144.9 20.9 201 146-387 148-356 (398)
192 PRK11028 6-phosphogluconolacto 99.9 4.5E-18 9.7E-23 143.7 32.4 253 39-343 33-304 (330)
193 KOG0644 Uncharacterized conser 99.9 3.1E-21 6.7E-26 165.7 12.7 281 34-388 184-471 (1113)
194 KOG1524 WD40 repeat-containing 99.9 8.9E-20 1.9E-24 149.4 20.3 209 53-341 76-284 (737)
195 KOG2110 Uncharacterized conser 99.9 1.9E-17 4.1E-22 129.7 32.2 234 5-264 9-251 (391)
196 PRK01742 tolB translocation pr 99.9 1.3E-19 2.8E-24 157.5 21.4 235 61-366 183-426 (429)
197 KOG1007 WD repeat protein TSSC 99.9 1.6E-19 3.5E-24 136.5 18.2 209 38-262 121-362 (370)
198 KOG4227 WD40 repeat protein [G 99.9 1.5E-19 3.2E-24 142.6 18.7 263 81-388 52-325 (609)
199 KOG1009 Chromatin assembly com 99.8 2.9E-19 6.2E-24 141.3 19.3 273 86-387 14-331 (434)
200 KOG0649 WD40 repeat protein [G 99.8 1E-18 2.2E-23 129.0 20.7 258 87-393 12-282 (325)
201 KOG1523 Actin-related protein 99.8 1.5E-18 3.2E-23 133.2 19.8 255 86-376 11-269 (361)
202 KOG0771 Prolactin regulatory e 99.8 1.3E-19 2.8E-24 144.1 14.6 197 44-262 148-355 (398)
203 KOG0322 G-protein beta subunit 99.8 3.7E-19 7.9E-24 132.8 16.0 287 6-342 19-322 (323)
204 KOG1524 WD40 repeat-containing 99.8 9E-19 1.9E-23 143.6 18.6 264 38-381 12-282 (737)
205 PF02239 Cytochrom_D1: Cytochr 99.8 1E-16 2.3E-21 134.7 31.1 309 53-390 6-352 (369)
206 KOG2394 WD40 protein DMR-N9 [G 99.8 1.8E-18 3.9E-23 141.8 19.7 252 88-391 126-458 (636)
207 KOG0644 Uncharacterized conser 99.8 3.7E-20 8.1E-25 159.2 10.2 239 139-390 187-431 (1113)
208 KOG2321 WD40 repeat protein [G 99.8 1.4E-17 3E-22 137.8 23.8 293 38-391 49-349 (703)
209 KOG1354 Serine/threonine prote 99.8 3E-18 6.4E-23 132.9 18.1 307 40-382 25-431 (433)
210 KOG1272 WD40-repeat-containing 99.8 1.6E-19 3.6E-24 145.1 10.8 270 40-380 129-404 (545)
211 KOG2139 WD40 repeat protein [G 99.8 2.7E-16 5.9E-21 123.0 26.9 239 5-262 102-384 (445)
212 KOG2139 WD40 repeat protein [G 99.8 1.1E-16 2.3E-21 125.2 24.6 317 40-385 98-431 (445)
213 KOG1517 Guanine nucleotide bin 99.8 2.3E-17 5E-22 146.0 23.4 291 4-346 1067-1384(1387)
214 PRK03629 tolB translocation pr 99.8 1.2E-16 2.7E-21 138.6 27.6 236 62-365 179-427 (429)
215 KOG2111 Uncharacterized conser 99.8 9.9E-16 2.2E-20 117.8 29.0 278 43-386 8-323 (346)
216 KOG1310 WD40 repeat protein [G 99.8 5E-18 1.1E-22 139.7 16.0 244 78-351 43-311 (758)
217 KOG1188 WD40 repeat protein [G 99.8 2.2E-17 4.7E-22 128.0 18.5 172 31-215 61-242 (376)
218 PRK01742 tolB translocation pr 99.8 2.2E-17 4.8E-22 143.6 20.9 200 31-261 194-401 (429)
219 KOG2315 Predicted translation 99.8 3.5E-15 7.7E-20 123.5 27.8 313 5-387 38-392 (566)
220 KOG1272 WD40-repeat-containing 99.8 3.3E-18 7.2E-23 137.7 9.6 231 87-384 131-361 (545)
221 PRK02889 tolB translocation pr 99.7 6.5E-16 1.4E-20 134.3 23.1 237 62-366 176-425 (427)
222 KOG1240 Protein kinase contain 99.7 8.3E-16 1.8E-20 138.3 23.9 264 80-389 1043-1338(1431)
223 KOG4497 Uncharacterized conser 99.7 1.3E-15 2.9E-20 117.8 21.4 304 4-379 51-426 (447)
224 KOG1409 Uncharacterized conser 99.7 1.6E-16 3.6E-21 123.4 16.1 323 34-387 18-396 (404)
225 PRK05137 tolB translocation pr 99.7 3.7E-15 8E-20 130.3 26.7 234 62-366 182-433 (435)
226 PRK04922 tolB translocation pr 99.7 1.3E-15 2.7E-20 133.0 23.7 234 62-365 184-432 (433)
227 KOG2111 Uncharacterized conser 99.7 6.6E-15 1.4E-19 113.4 23.3 240 87-388 7-259 (346)
228 PRK03629 tolB translocation pr 99.7 4.2E-15 9.1E-20 129.1 25.2 203 31-261 189-406 (429)
229 KOG2314 Translation initiation 99.7 1.7E-14 3.6E-19 119.4 26.8 320 5-387 214-575 (698)
230 KOG0280 Uncharacterized conser 99.7 4.6E-15 9.9E-20 113.0 21.3 275 61-387 45-335 (339)
231 COG5354 Uncharacterized protei 99.7 3E-14 6.5E-19 116.8 27.3 317 5-388 36-398 (561)
232 KOG3881 Uncharacterized conser 99.7 2.5E-15 5.3E-20 118.9 19.6 269 39-366 54-342 (412)
233 KOG1334 WD40 repeat protein [G 99.7 3.5E-16 7.5E-21 127.1 14.6 266 80-388 137-427 (559)
234 PF02239 Cytochrom_D1: Cytochr 99.7 3.1E-13 6.6E-18 113.9 30.9 265 35-352 31-356 (369)
235 PF10282 Lactonase: Lactonase, 99.7 6.1E-13 1.3E-17 112.5 32.5 287 55-386 2-323 (345)
236 PRK05137 tolB translocation pr 99.7 4.4E-14 9.5E-19 123.6 26.5 217 108-390 183-417 (435)
237 KOG2394 WD40 protein DMR-N9 [G 99.7 8.5E-16 1.8E-20 126.4 14.5 186 49-240 182-383 (636)
238 PRK02889 tolB translocation pr 99.7 2.6E-14 5.6E-19 124.3 23.5 197 144-386 197-404 (427)
239 PRK04922 tolB translocation pr 99.7 3E-14 6.5E-19 124.4 23.9 205 30-262 193-412 (433)
240 PF08662 eIF2A: Eukaryotic tra 99.7 8E-15 1.7E-19 112.1 17.8 152 188-388 9-182 (194)
241 KOG3881 Uncharacterized conser 99.7 1E-14 2.2E-19 115.4 18.0 213 37-262 102-321 (412)
242 PF08662 eIF2A: Eukaryotic tra 99.7 2.6E-14 5.6E-19 109.3 18.8 149 44-214 9-178 (194)
243 PF10282 Lactonase: Lactonase, 99.7 1E-11 2.2E-16 105.0 35.8 284 40-363 36-345 (345)
244 TIGR02800 propeller_TolB tol-p 99.6 2.4E-13 5.1E-18 119.3 26.0 233 62-364 170-417 (417)
245 COG2706 3-carboxymuconate cycl 99.6 2.9E-12 6.2E-17 101.3 28.5 282 61-387 15-323 (346)
246 PRK04792 tolB translocation pr 99.6 2.9E-13 6.2E-18 118.2 25.6 233 63-365 199-446 (448)
247 PRK00178 tolB translocation pr 99.6 4.5E-13 9.7E-18 117.5 26.5 234 63-366 180-428 (430)
248 KOG0974 WD-repeat protein WDR6 99.6 3.8E-14 8.3E-19 125.8 19.4 198 145-389 90-292 (967)
249 TIGR02658 TTQ_MADH_Hv methylam 99.6 1E-11 2.2E-16 102.2 31.1 278 62-390 27-335 (352)
250 KOG2041 WD40 repeat protein [G 99.6 3.8E-13 8.3E-18 115.2 22.2 287 40-385 14-337 (1189)
251 KOG0974 WD-repeat protein WDR6 99.6 1.6E-12 3.5E-17 115.7 25.8 197 43-262 90-289 (967)
252 PRK01029 tolB translocation pr 99.6 2.5E-12 5.4E-17 111.4 26.5 242 62-367 165-426 (428)
253 COG4946 Uncharacterized protei 99.6 2E-11 4.3E-16 99.8 29.1 320 15-388 53-480 (668)
254 KOG2321 WD40 repeat protein [G 99.6 2.8E-13 6.1E-18 112.8 18.9 254 83-389 49-306 (703)
255 KOG4547 WD40 repeat-containing 99.6 9.2E-13 2E-17 110.2 21.9 194 49-262 2-221 (541)
256 TIGR02800 propeller_TolB tol-p 99.6 2.3E-12 5.1E-17 113.0 25.8 193 144-386 191-398 (417)
257 PRK00178 tolB translocation pr 99.6 3.3E-12 7.2E-17 112.1 25.6 203 31-261 189-406 (430)
258 KOG1064 RAVE (regulator of V-A 99.6 3.4E-14 7.4E-19 132.8 12.9 221 87-378 2210-2439(2439)
259 KOG1354 Serine/threonine prote 99.6 5E-13 1.1E-17 104.3 17.1 274 87-389 27-363 (433)
260 KOG0280 Uncharacterized conser 99.6 1.5E-12 3.3E-17 99.5 19.0 204 41-262 70-285 (339)
261 PRK04792 tolB translocation pr 99.6 5.1E-12 1.1E-16 110.4 24.9 202 32-261 209-425 (448)
262 PRK01029 tolB translocation pr 99.6 8.7E-12 1.9E-16 108.1 25.9 211 30-262 174-404 (428)
263 KOG1064 RAVE (regulator of V-A 99.5 7.3E-14 1.6E-18 130.7 12.8 193 34-263 2202-2400(2439)
264 KOG2315 Predicted translation 99.5 1.7E-11 3.6E-16 102.2 25.2 293 4-366 76-411 (566)
265 KOG4547 WD40 repeat-containing 99.5 1.6E-12 3.6E-17 108.7 19.3 189 152-386 3-221 (541)
266 COG2706 3-carboxymuconate cycl 99.5 6.3E-11 1.4E-15 93.9 26.9 247 3-262 41-322 (346)
267 COG5170 CDC55 Serine/threonine 99.5 1.4E-12 3.1E-17 100.6 17.4 270 39-343 25-367 (460)
268 KOG0309 Conserved WD40 repeat- 99.5 1.1E-13 2.4E-18 118.6 12.3 303 39-387 23-341 (1081)
269 KOG1912 WD40 repeat protein [G 99.5 5.1E-12 1.1E-16 109.3 21.2 376 5-390 19-511 (1062)
270 COG4946 Uncharacterized protei 99.5 1.2E-10 2.6E-15 95.4 27.4 151 33-204 352-507 (668)
271 KOG2041 WD40 repeat protein [G 99.5 6.2E-13 1.3E-17 113.9 14.4 262 87-376 16-279 (1189)
272 PF04762 IKI3: IKI3 family; I 99.5 2.5E-10 5.5E-15 107.1 32.8 329 39-387 74-458 (928)
273 KOG2314 Translation initiation 99.5 6.3E-11 1.4E-15 98.8 23.3 278 43-386 213-526 (698)
274 COG5354 Uncharacterized protei 99.5 1.4E-10 3.1E-15 95.7 23.9 287 32-387 24-350 (561)
275 TIGR02658 TTQ_MADH_Hv methylam 99.5 1.1E-09 2.3E-14 90.5 29.3 245 48-352 53-339 (352)
276 KOG1409 Uncharacterized conser 99.4 3.9E-11 8.4E-16 94.0 19.3 250 81-390 20-275 (404)
277 TIGR03300 assembly_YfgL outer 99.4 3.6E-10 7.9E-15 97.6 26.9 263 52-390 65-343 (377)
278 TIGR03300 assembly_YfgL outer 99.4 9.8E-10 2.1E-14 94.9 29.4 260 51-382 104-376 (377)
279 KOG4190 Uncharacterized conser 99.4 1.4E-12 3E-17 108.7 11.0 285 34-381 729-1032(1034)
280 PF04762 IKI3: IKI3 family; I 99.4 2.2E-08 4.7E-13 94.4 38.2 324 37-388 117-567 (928)
281 PLN02919 haloacid dehalogenase 99.4 7.7E-10 1.7E-14 105.9 29.1 271 89-388 571-891 (1057)
282 KOG4714 Nucleoporin [Nuclear s 99.4 1.4E-11 3.1E-16 92.7 12.7 202 43-262 39-255 (319)
283 PF15492 Nbas_N: Neuroblastoma 99.4 2.5E-09 5.4E-14 82.4 23.7 229 91-390 3-264 (282)
284 KOG4532 WD40-like repeat conta 99.3 5.9E-10 1.3E-14 84.6 19.3 266 60-386 50-332 (344)
285 PLN02919 haloacid dehalogenase 99.3 3.1E-09 6.8E-14 101.8 29.1 268 44-347 571-892 (1057)
286 KOG0309 Conserved WD40 repeat- 99.3 2E-11 4.3E-16 105.2 12.7 296 6-344 29-340 (1081)
287 PF15492 Nbas_N: Neuroblastoma 99.3 8.2E-09 1.8E-13 79.6 25.0 245 45-355 2-271 (282)
288 PRK04043 tolB translocation pr 99.3 1.3E-08 2.8E-13 87.9 26.8 151 87-262 189-358 (419)
289 PF08450 SGL: SMP-30/Gluconola 99.3 4E-08 8.7E-13 79.4 28.1 222 90-372 4-242 (246)
290 KOG0882 Cyclophilin-related pe 99.3 3.4E-10 7.3E-15 92.1 15.0 289 39-351 8-313 (558)
291 KOG3914 WD repeat protein WDR4 99.3 1.4E-10 3.1E-15 92.8 12.6 164 42-227 64-231 (390)
292 KOG2695 WD40 repeat protein [G 99.2 4E-11 8.7E-16 94.0 8.7 167 149-354 218-387 (425)
293 PRK04043 tolB translocation pr 99.2 1.4E-08 3.1E-13 87.6 24.8 199 33-262 181-401 (419)
294 KOG3914 WD repeat protein WDR4 99.2 4.9E-10 1.1E-14 89.9 13.7 161 87-266 64-228 (390)
295 KOG4532 WD40-like repeat conta 99.2 5.3E-09 1.2E-13 79.5 18.3 194 153-389 83-286 (344)
296 KOG4190 Uncharacterized conser 99.2 1.7E-10 3.6E-15 96.5 10.0 250 78-384 728-987 (1034)
297 COG5170 CDC55 Serine/threonine 99.2 9.2E-10 2E-14 85.4 13.2 271 86-385 27-367 (460)
298 KOG4714 Nucleoporin [Nuclear s 99.2 2.9E-10 6.4E-15 85.8 9.9 168 31-215 80-254 (319)
299 KOG1275 PAB-dependent poly(A) 99.1 7.1E-09 1.5E-13 92.1 16.8 182 153-383 146-340 (1118)
300 PF08450 SGL: SMP-30/Gluconola 99.1 2.2E-06 4.9E-11 69.3 30.2 219 4-249 2-243 (246)
301 PF00400 WD40: WD domain, G-be 99.1 4.7E-10 1E-14 61.2 5.8 39 345-383 1-39 (39)
302 KOG2695 WD40 repeat protein [G 99.1 8.3E-10 1.8E-14 86.8 9.0 149 101-268 228-383 (425)
303 KOG1912 WD40 repeat protein [G 99.1 1.7E-08 3.7E-13 88.2 17.5 274 40-387 15-306 (1062)
304 KOG0882 Cyclophilin-related pe 99.1 6.8E-09 1.5E-13 84.7 14.2 264 84-389 8-309 (558)
305 PRK11138 outer membrane biogen 99.1 1.1E-06 2.5E-11 76.3 29.1 264 52-384 120-393 (394)
306 KOG3621 WD40 repeat-containing 99.1 1.4E-07 3.1E-12 81.8 22.3 153 39-204 32-188 (726)
307 PF13360 PQQ_2: PQQ-like domai 99.1 5.7E-07 1.2E-11 72.5 25.1 223 60-350 1-237 (238)
308 PF07433 DUF1513: Protein of u 99.0 1.8E-06 3.8E-11 69.2 25.9 235 87-379 6-279 (305)
309 PF13360 PQQ_2: PQQ-like domai 99.0 3.4E-07 7.4E-12 73.8 22.7 225 106-390 2-235 (238)
310 PF06433 Me-amine-dh_H: Methyl 99.0 1.7E-06 3.6E-11 70.2 25.1 280 62-390 17-325 (342)
311 PRK11138 outer membrane biogen 99.0 1.2E-06 2.5E-11 76.2 26.4 266 52-389 69-357 (394)
312 PF00400 WD40: WD domain, G-be 99.0 1.6E-09 3.4E-14 59.1 5.5 36 33-68 4-39 (39)
313 PF07433 DUF1513: Protein of u 99.0 3.1E-06 6.6E-11 67.9 25.4 200 42-263 6-249 (305)
314 KOG4649 PQQ (pyrrolo-quinoline 99.0 6.4E-06 1.4E-10 63.1 25.1 139 52-211 23-161 (354)
315 KOG1832 HIV-1 Vpr-binding prot 99.0 9.7E-10 2.1E-14 97.2 5.6 194 34-264 1095-1294(1516)
316 PF14583 Pectate_lyase22: Olig 98.9 9.1E-06 2E-10 67.3 27.3 277 45-385 40-381 (386)
317 KOG1920 IkappaB kinase complex 98.9 1.1E-05 2.3E-10 75.0 29.1 217 40-263 68-324 (1265)
318 KOG1920 IkappaB kinase complex 98.9 4.2E-06 9E-11 77.6 25.4 155 86-262 69-275 (1265)
319 PF00930 DPPIV_N: Dipeptidyl p 98.8 1.3E-05 2.8E-10 68.5 26.0 205 40-248 42-297 (353)
320 KOG1645 RING-finger-containing 98.8 3.3E-07 7.1E-12 74.2 14.8 239 140-386 191-462 (463)
321 KOG2114 Vacuolar assembly/sort 98.8 4.2E-06 9.2E-11 74.7 22.7 208 42-262 27-244 (933)
322 PF06977 SdiA-regulated: SdiA- 98.8 1.9E-05 4.1E-10 62.5 23.6 211 34-257 15-246 (248)
323 KOG1275 PAB-dependent poly(A) 98.8 3.1E-07 6.8E-12 82.1 14.9 186 52-260 147-341 (1118)
324 KOG2066 Vacuolar assembly/sort 98.8 9.2E-07 2E-11 78.1 17.5 141 51-215 82-233 (846)
325 PF11768 DUF3312: Protein of u 98.8 5.9E-07 1.3E-11 76.8 15.6 77 38-119 257-333 (545)
326 KOG3617 WD40 and TPR repeat-co 98.8 1E-06 2.3E-11 78.3 17.4 110 88-215 18-131 (1416)
327 PRK02888 nitrous-oxide reducta 98.8 1.4E-05 3.1E-10 70.4 24.2 259 55-344 69-405 (635)
328 PF00930 DPPIV_N: Dipeptidyl p 98.7 1.9E-05 4E-10 67.5 24.2 106 49-162 1-120 (353)
329 KOG1832 HIV-1 Vpr-binding prot 98.7 1.5E-08 3.2E-13 90.1 5.3 192 140-386 1099-1292(1516)
330 KOG2066 Vacuolar assembly/sort 98.7 2.9E-06 6.3E-11 75.0 18.9 149 87-267 41-193 (846)
331 PF08596 Lgl_C: Lethal giant l 98.7 3.4E-05 7.3E-10 66.0 25.0 251 87-375 3-326 (395)
332 KOG3617 WD40 and TPR repeat-co 98.7 1.6E-06 3.6E-11 77.1 17.4 331 7-376 21-376 (1416)
333 cd00216 PQQ_DH Dehydrogenases 98.7 9.1E-05 2E-09 66.2 27.6 276 52-390 61-429 (488)
334 KOG2114 Vacuolar assembly/sort 98.6 6.7E-06 1.5E-10 73.4 18.6 201 149-388 30-246 (933)
335 PF11768 DUF3312: Protein of u 98.6 5.8E-06 1.3E-10 71.0 16.6 71 142-215 259-329 (545)
336 KOG1645 RING-finger-containing 98.6 1.2E-05 2.7E-10 65.4 17.5 83 34-120 187-271 (463)
337 PF04053 Coatomer_WDAD: Coatom 98.6 0.00011 2.4E-09 63.8 23.9 185 36-257 28-219 (443)
338 KOG1008 Uncharacterized conser 98.5 4E-08 8.7E-13 84.1 2.2 208 40-263 56-277 (783)
339 KOG1008 Uncharacterized conser 98.5 5.9E-08 1.3E-12 83.2 2.5 203 144-388 58-278 (783)
340 PF04053 Coatomer_WDAD: Coatom 98.5 7.7E-05 1.7E-09 64.7 20.8 219 3-262 34-263 (443)
341 PF06433 Me-amine-dh_H: Methyl 98.5 0.00047 1E-08 56.4 26.5 249 43-353 38-330 (342)
342 PF06977 SdiA-regulated: SdiA- 98.5 0.00018 3.9E-09 57.0 20.8 206 144-382 23-247 (248)
343 PRK02888 nitrous-oxide reducta 98.4 6.3E-05 1.4E-09 66.5 19.2 106 144-251 322-451 (635)
344 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00051 1.1E-08 53.1 21.9 143 97-261 23-165 (354)
345 COG0823 TolB Periplasmic compo 98.4 0.00015 3.2E-09 62.8 20.2 181 144-373 194-387 (425)
346 PF04841 Vps16_N: Vps16, N-ter 98.3 0.0016 3.6E-08 56.6 26.1 193 45-262 33-247 (410)
347 KOG3621 WD40 repeat-containing 98.3 4.3E-05 9.2E-10 67.0 15.4 139 87-240 35-179 (726)
348 COG0823 TolB Periplasmic compo 98.3 0.00026 5.7E-09 61.3 20.2 155 87-262 194-359 (425)
349 PF02897 Peptidase_S9_N: Proly 98.3 0.0022 4.8E-08 56.5 28.6 201 43-261 126-357 (414)
350 cd00216 PQQ_DH Dehydrogenases 98.3 0.0016 3.5E-08 58.4 25.4 258 53-353 111-434 (488)
351 PF08596 Lgl_C: Lethal giant l 98.3 0.00017 3.7E-09 61.8 17.8 223 144-390 3-295 (395)
352 PF14783 BBS2_Mid: Ciliary BBS 98.2 0.00024 5.2E-09 47.5 14.3 101 145-257 2-110 (111)
353 PF00780 CNH: CNH domain; Int 98.2 0.0015 3.2E-08 54.0 22.1 148 95-265 5-169 (275)
354 PRK13616 lipoprotein LpqB; Pro 98.2 0.00097 2.1E-08 60.5 21.1 189 39-257 348-564 (591)
355 PF03178 CPSF_A: CPSF A subuni 98.1 0.004 8.6E-08 52.7 25.8 217 107-382 2-262 (321)
356 COG3204 Uncharacterized protei 98.1 0.0024 5.3E-08 50.6 19.8 173 36-215 81-263 (316)
357 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0055 1.2E-07 53.4 26.1 199 165-368 62-272 (410)
358 smart00320 WD40 WD40 repeats. 98.1 1.1E-05 2.4E-10 43.4 5.2 39 345-383 2-40 (40)
359 COG3391 Uncharacterized conser 98.1 0.0059 1.3E-07 52.8 27.9 261 42-366 32-309 (381)
360 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.01 2.2E-07 53.6 28.2 196 52-266 69-338 (527)
361 PF03178 CPSF_A: CPSF A subuni 98.0 0.0077 1.7E-07 51.0 24.8 181 63-262 3-203 (321)
362 PRK13616 lipoprotein LpqB; Pro 98.0 0.0013 2.9E-08 59.6 18.1 192 4-211 352-564 (591)
363 KOG2444 WD40 repeat protein [G 98.0 2E-05 4.2E-10 59.5 5.5 68 324-391 113-183 (238)
364 COG3386 Gluconolactonase [Carb 97.9 0.0077 1.7E-07 49.8 22.5 204 23-250 48-274 (307)
365 PF14655 RAB3GAP2_N: Rab3 GTPa 97.9 0.01 2.2E-07 51.0 24.9 96 90-193 6-117 (415)
366 COG3391 Uncharacterized conser 97.9 0.011 2.5E-07 51.1 28.4 201 145-388 76-286 (381)
367 smart00320 WD40 WD40 repeats. 97.9 2.2E-05 4.7E-10 42.2 4.1 35 34-68 6-40 (40)
368 COG3386 Gluconolactonase [Carb 97.9 0.0095 2.1E-07 49.3 23.4 222 91-372 30-272 (307)
369 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0026 5.7E-08 42.7 14.0 100 43-167 2-109 (111)
370 KOG4640 Anaphase-promoting com 97.9 9.1E-05 2E-09 64.2 8.5 71 319-390 26-97 (665)
371 PF14583 Pectate_lyase22: Olig 97.8 0.013 2.9E-07 49.2 22.4 226 92-376 42-303 (386)
372 PF08553 VID27: VID27 cytoplas 97.8 0.0013 2.9E-08 60.7 16.1 140 60-214 502-646 (794)
373 COG5276 Uncharacterized conser 97.8 0.0099 2.2E-07 47.2 25.8 157 87-267 88-247 (370)
374 KOG4640 Anaphase-promoting com 97.8 0.00015 3.2E-09 63.0 9.2 92 144-241 22-115 (665)
375 PF10647 Gmad1: Lipoprotein Lp 97.8 0.013 2.8E-07 47.4 20.4 154 3-163 25-186 (253)
376 PF14870 PSII_BNR: Photosynthe 97.7 0.02 4.3E-07 47.1 29.2 278 40-382 16-301 (302)
377 PF07995 GSDH: Glucose / Sorbo 97.7 0.025 5.4E-07 47.9 27.1 57 324-380 270-330 (331)
378 PF02897 Peptidase_S9_N: Proly 97.7 0.037 8E-07 48.9 28.2 250 87-390 125-409 (414)
379 PHA02713 hypothetical protein; 97.6 0.0055 1.2E-07 55.8 16.9 189 51-262 303-534 (557)
380 COG3490 Uncharacterized protei 97.6 0.012 2.5E-07 46.6 15.8 190 47-260 120-347 (366)
381 KOG4499 Ca2+-binding protein R 97.6 0.0089 1.9E-07 45.8 14.5 154 40-204 108-273 (310)
382 PHA02713 hypothetical protein; 97.6 0.021 4.5E-07 52.2 19.8 93 96-206 303-408 (557)
383 PF08553 VID27: VID27 cytoplas 97.5 0.0027 5.9E-08 58.8 13.5 150 195-385 491-647 (794)
384 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.075 1.6E-06 48.2 25.6 159 53-215 121-333 (527)
385 KOG4441 Proteins containing BT 97.5 0.039 8.5E-07 50.4 20.1 191 49-262 282-500 (571)
386 PF05694 SBP56: 56kDa selenium 97.5 0.055 1.2E-06 46.2 23.0 203 51-266 86-347 (461)
387 PF12894 Apc4_WD40: Anaphase-p 97.4 0.00076 1.6E-08 37.6 5.5 31 40-70 11-41 (47)
388 KOG2444 WD40 repeat protein [G 97.4 0.00031 6.8E-09 53.2 5.2 105 97-215 70-177 (238)
389 PF14655 RAB3GAP2_N: Rab3 GTPa 97.3 0.086 1.9E-06 45.5 29.7 33 231-263 307-339 (415)
390 KOG2395 Protein involved in va 97.3 0.0056 1.2E-07 52.6 11.2 150 195-385 343-500 (644)
391 PF14727 PHTB1_N: PTHB1 N-term 97.2 0.12 2.6E-06 44.8 31.2 158 51-215 36-204 (418)
392 KOG4441 Proteins containing BT 97.2 0.05 1.1E-06 49.7 17.5 194 43-262 325-547 (571)
393 KOG4499 Ca2+-binding protein R 97.2 0.064 1.4E-06 41.4 17.9 44 322-365 220-263 (310)
394 PF10647 Gmad1: Lipoprotein Lp 97.2 0.086 1.9E-06 42.7 19.6 147 42-207 25-187 (253)
395 PF15390 DUF4613: Domain of un 97.2 0.1 2.3E-06 46.1 17.9 115 144-262 58-187 (671)
396 COG3204 Uncharacterized protei 97.1 0.095 2.1E-06 42.0 18.6 163 84-262 84-264 (316)
397 PHA03098 kelch-like protein; P 97.1 0.053 1.2E-06 49.7 17.3 187 51-262 294-512 (534)
398 KOG2395 Protein involved in va 97.1 0.042 9.1E-07 47.6 14.8 103 153-260 344-458 (644)
399 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0037 8.1E-08 34.8 5.8 31 85-115 11-41 (47)
400 KOG2079 Vacuolar assembly/sort 97.0 0.0027 5.9E-08 59.2 7.9 105 51-171 98-202 (1206)
401 PF00780 CNH: CNH domain; Int 97.0 0.15 3.3E-06 42.1 24.8 196 39-263 34-257 (275)
402 PF14727 PHTB1_N: PTHB1 N-term 97.0 0.18 4E-06 43.7 17.8 166 195-386 35-205 (418)
403 KOG1897 Damage-specific DNA bi 97.0 0.35 7.6E-06 45.6 30.9 62 324-387 839-900 (1096)
404 PF14870 PSII_BNR: Photosynthe 97.0 0.17 3.6E-06 41.9 27.1 189 43-252 64-253 (302)
405 KOG2079 Vacuolar assembly/sort 96.9 0.037 8E-07 52.2 13.5 73 40-114 130-202 (1206)
406 PRK10115 protease 2; Provision 96.7 0.54 1.2E-05 44.4 30.6 197 42-260 128-343 (686)
407 PHA02790 Kelch-like protein; P 96.6 0.38 8.2E-06 43.4 18.1 184 51-262 271-471 (480)
408 PF12234 Rav1p_C: RAVE protein 96.6 0.16 3.4E-06 46.4 15.2 123 42-171 31-155 (631)
409 PF07995 GSDH: Glucose / Sorbo 96.6 0.39 8.3E-06 40.9 26.3 243 3-256 3-330 (331)
410 PHA03098 kelch-like protein; P 96.6 0.29 6.2E-06 45.0 17.4 103 96-215 294-414 (534)
411 KOG2280 Vacuolar assembly/sort 96.5 0.086 1.9E-06 47.9 12.7 180 61-263 63-248 (829)
412 KOG2377 Uncharacterized conser 96.5 0.1 2.2E-06 44.5 12.3 100 144-249 68-171 (657)
413 COG3490 Uncharacterized protei 96.5 0.34 7.5E-06 38.8 21.7 103 88-204 70-180 (366)
414 PF05694 SBP56: 56kDa selenium 96.4 0.51 1.1E-05 40.6 19.0 154 49-216 138-343 (461)
415 KOG3630 Nuclear pore complex, 96.4 0.067 1.4E-06 50.9 12.0 153 87-249 102-261 (1405)
416 KOG1897 Damage-specific DNA bi 96.3 1 2.2E-05 42.7 30.5 111 144-262 776-899 (1096)
417 KOG2377 Uncharacterized conser 96.2 0.19 4.1E-06 43.0 12.6 143 44-201 26-169 (657)
418 KOG3630 Nuclear pore complex, 96.2 0.12 2.6E-06 49.3 12.4 114 144-261 102-228 (1405)
419 KOG2280 Vacuolar assembly/sort 96.2 0.88 1.9E-05 41.8 17.1 192 164-367 64-271 (829)
420 PF12234 Rav1p_C: RAVE protein 96.2 0.34 7.4E-06 44.3 14.9 110 88-214 32-155 (631)
421 PF15390 DUF4613: Domain of un 96.2 0.9 1.9E-05 40.6 18.1 155 40-214 19-185 (671)
422 PF10313 DUF2415: Uncharacteri 96.1 0.023 5E-07 30.6 4.6 31 185-215 1-33 (43)
423 PF10313 DUF2415: Uncharacteri 96.1 0.044 9.5E-07 29.6 5.6 32 41-72 1-35 (43)
424 TIGR02604 Piru_Ver_Nterm putat 96.1 0.64 1.4E-05 40.3 15.8 157 41-204 14-202 (367)
425 PF13449 Phytase-like: Esteras 96.0 0.79 1.7E-05 38.9 17.2 121 41-162 20-166 (326)
426 COG4257 Vgb Streptogramin lyas 96.0 0.58 1.3E-05 37.3 20.0 229 3-262 63-306 (353)
427 TIGR02604 Piru_Ver_Nterm putat 96.0 0.76 1.6E-05 39.8 16.1 59 317-376 127-204 (367)
428 TIGR03118 PEPCTERM_chp_1 conse 96.0 0.69 1.5E-05 37.7 22.7 231 87-365 24-307 (336)
429 TIGR03074 PQQ_membr_DH membran 95.9 1.7 3.6E-05 41.5 22.3 111 154-269 194-352 (764)
430 PHA02790 Kelch-like protein; P 95.9 1.2 2.7E-05 40.2 17.2 103 153-262 271-385 (480)
431 PF08728 CRT10: CRT10; InterP 95.6 0.3 6.5E-06 45.1 12.3 71 314-384 164-245 (717)
432 PF05096 Glu_cyclase_2: Glutam 95.6 0.95 2.1E-05 36.4 23.7 184 145-373 47-249 (264)
433 PRK10115 protease 2; Provision 95.6 2.2 4.7E-05 40.5 31.6 113 86-215 127-255 (686)
434 PF10168 Nup88: Nuclear pore c 95.5 2.3 5E-05 40.2 24.9 89 85-174 84-181 (717)
435 PF08728 CRT10: CRT10; InterP 95.5 0.88 1.9E-05 42.3 14.5 172 39-214 39-245 (717)
436 KOG1916 Nuclear protein, conta 95.3 0.046 1E-06 50.6 5.9 171 35-213 127-321 (1283)
437 PF05096 Glu_cyclase_2: Glutam 95.2 1.3 2.8E-05 35.6 21.3 183 42-251 46-250 (264)
438 COG4257 Vgb Streptogramin lyas 95.1 1.4 3.1E-05 35.3 15.9 201 41-262 62-263 (353)
439 PF07569 Hira: TUP1-like enhan 94.6 0.32 6.9E-06 38.3 8.4 82 93-177 18-100 (219)
440 KOG1983 Tomosyn and related SN 94.5 1.3 2.9E-05 43.6 13.9 32 144-175 37-68 (993)
441 PF14761 HPS3_N: Hermansky-Pud 94.5 1.7 3.7E-05 33.6 16.4 102 98-215 29-163 (215)
442 KOG1916 Nuclear protein, conta 94.5 0.064 1.4E-06 49.7 4.8 110 144-260 134-264 (1283)
443 TIGR03118 PEPCTERM_chp_1 conse 94.4 2.3 5E-05 34.8 24.2 204 41-263 23-281 (336)
444 KOG2247 WD40 repeat-containing 94.3 0.0076 1.7E-07 51.4 -1.1 144 41-206 35-179 (615)
445 TIGR03074 PQQ_membr_DH membran 94.3 5.3 0.00011 38.3 23.2 127 52-181 194-353 (764)
446 PF07569 Hira: TUP1-like enhan 94.1 0.42 9.1E-06 37.7 8.2 69 48-117 18-97 (219)
447 KOG1900 Nuclear pore complex, 94.0 2 4.3E-05 42.4 13.5 151 52-215 91-272 (1311)
448 COG5167 VID27 Protein involved 93.9 4.3 9.3E-05 35.9 14.9 63 195-262 571-633 (776)
449 PRK13684 Ycf48-like protein; P 93.6 4.1 8.9E-05 34.8 29.6 154 184-384 172-330 (334)
450 PF10168 Nup88: Nuclear pore c 93.6 6.9 0.00015 37.2 24.0 28 144-172 86-113 (717)
451 PRK14131 N-acetylneuraminic ac 93.6 4.7 0.0001 35.2 19.2 40 164-205 189-230 (376)
452 PF14781 BBS2_N: Ciliary BBSom 93.5 1.9 4E-05 30.5 14.0 114 45-179 3-132 (136)
453 PRK13615 lipoprotein LpqB; Pro 93.4 6.2 0.00013 36.1 19.8 160 4-172 336-502 (557)
454 KOG2247 WD40 repeat-containing 93.4 0.0079 1.7E-07 51.3 -2.6 146 88-256 37-183 (615)
455 KOG1900 Nuclear pore complex, 93.4 4.4 9.6E-05 40.2 14.5 152 90-263 83-274 (1311)
456 COG4590 ABC-type uncharacteriz 93.3 0.17 3.7E-06 43.2 4.9 163 86-265 221-390 (733)
457 TIGR02276 beta_rpt_yvtn 40-res 93.2 0.66 1.4E-05 24.9 5.8 40 323-363 1-41 (42)
458 KOG4460 Nuclear pore complex, 93.2 3.8 8.3E-05 36.3 12.6 87 87-177 105-203 (741)
459 COG4590 ABC-type uncharacteriz 92.7 0.59 1.3E-05 40.2 7.1 166 36-215 216-386 (733)
460 PLN02193 nitrile-specifier pro 92.6 7.6 0.00017 35.1 16.6 105 96-215 228-351 (470)
461 PLN02193 nitrile-specifier pro 92.6 7.7 0.00017 35.1 16.4 140 51-206 228-387 (470)
462 TIGR02276 beta_rpt_yvtn 40-res 92.6 0.92 2E-05 24.4 5.9 40 152-192 1-41 (42)
463 COG5167 VID27 Protein involved 92.5 5 0.00011 35.5 12.4 62 324-386 572-633 (776)
464 KOG4659 Uncharacterized conser 92.5 13 0.00027 37.4 18.5 298 18-380 325-686 (1899)
465 KOG3616 Selective LIM binding 92.5 8.5 0.00018 35.9 14.3 70 40-115 14-83 (1636)
466 COG3823 Glutamine cyclotransfe 92.5 3.9 8.5E-05 31.4 13.8 102 153-262 55-159 (262)
467 COG5276 Uncharacterized conser 92.4 5.3 0.00011 32.6 26.3 189 6-215 91-285 (370)
468 PF14761 HPS3_N: Hermansky-Pud 92.2 4.4 9.6E-05 31.4 15.5 153 53-213 29-212 (215)
469 KOG1983 Tomosyn and related SN 92.1 14 0.0003 36.9 17.8 35 38-72 33-67 (993)
470 PF07676 PD40: WD40-like Beta 91.6 0.94 2E-05 23.9 4.9 32 36-67 4-38 (39)
471 TIGR03548 mutarot_permut cycli 91.3 8.3 0.00018 32.8 18.9 61 153-215 123-194 (323)
472 PF02333 Phytase: Phytase; In 90.9 9.9 0.00021 32.8 20.6 201 50-262 66-291 (381)
473 PLN02153 epithiospecifier prot 90.8 9.8 0.00021 32.7 16.3 68 51-120 85-172 (341)
474 PF12768 Rax2: Cortical protei 90.8 8.4 0.00018 31.8 12.7 118 62-193 16-145 (281)
475 PF10214 Rrn6: RNA polymerase 90.4 18 0.0004 35.1 21.1 115 143-263 146-278 (765)
476 PF12657 TFIIIC_delta: Transcr 90.3 3.5 7.6E-05 31.2 8.7 31 232-262 86-122 (173)
477 PF07676 PD40: WD40-like Beta 90.2 1.6 3.4E-05 23.0 5.0 31 352-382 5-38 (39)
478 PF10214 Rrn6: RNA polymerase 90.1 19 0.00042 35.0 22.2 173 38-215 77-276 (765)
479 TIGR03547 muta_rot_YjhT mutatr 90.1 11 0.00025 32.3 18.4 41 164-206 168-210 (346)
480 PF07250 Glyoxal_oxid_N: Glyox 90.1 3.3 7.1E-05 33.2 8.6 136 109-263 48-199 (243)
481 PF07250 Glyoxal_oxid_N: Glyox 90.1 8.6 0.00019 30.9 11.4 125 47-182 73-207 (243)
482 PF11715 Nup160: Nucleoporin N 90.0 1.6 3.5E-05 40.3 8.0 86 95-180 156-256 (547)
483 PRK14131 N-acetylneuraminic ac 90.0 13 0.00027 32.6 18.7 53 153-206 84-149 (376)
484 PF11715 Nup160: Nucleoporin N 89.9 2 4.3E-05 39.7 8.5 71 50-120 156-253 (547)
485 TIGR03548 mutarot_permut cycli 89.1 13 0.00028 31.6 19.6 105 153-262 72-195 (323)
486 PRK13684 Ycf48-like protein; P 89.1 14 0.00029 31.7 28.0 105 144-256 174-283 (334)
487 PF08801 Nucleoporin_N: Nup133 89.0 16 0.00035 32.5 15.5 31 356-386 190-220 (422)
488 COG1770 PtrB Protease II [Amin 89.0 19 0.00041 33.4 20.0 203 42-264 130-351 (682)
489 PF05935 Arylsulfotrans: Aryls 88.9 18 0.00038 32.9 17.2 80 162-250 126-208 (477)
490 PF13449 Phytase-like: Esteras 88.4 15 0.00032 31.3 15.7 71 315-385 148-249 (326)
491 PF10395 Utp8: Utp8 family; I 88.4 22 0.00047 33.3 15.8 156 40-214 129-304 (670)
492 smart00564 PQQ beta-propeller 88.3 1.7 3.7E-05 21.7 4.2 26 326-351 7-32 (33)
493 PLN02153 epithiospecifier prot 88.1 16 0.00035 31.4 18.1 67 51-120 32-114 (341)
494 PF02333 Phytase: Phytase; In 87.4 18 0.0004 31.3 24.5 152 95-262 66-238 (381)
495 smart00036 CNH Domain found in 87.0 17 0.00037 30.6 27.0 62 51-117 12-75 (302)
496 PF12768 Rax2: Cortical protei 86.9 16 0.00035 30.2 13.8 92 106-213 15-121 (281)
497 PF12657 TFIIIC_delta: Transcr 86.7 10 0.00022 28.7 9.2 30 315-344 87-122 (173)
498 PLN00033 photosystem II stabil 86.5 22 0.00048 31.3 28.8 106 145-258 241-353 (398)
499 PF03088 Str_synth: Strictosid 86.5 7.1 0.00015 25.5 9.4 40 61-104 36-75 (89)
500 KOG2006 WD40 repeat protein [G 85.7 22 0.00047 34.7 12.1 74 45-118 153-228 (1023)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.8e-59 Score=358.79 Aligned_cols=319 Identities=21% Similarity=0.312 Sum_probs=284.2
Q ss_pred ceeeEEecCceeEeeccceEEEE---eeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 4 GREVNYSGRGRFSAADSCHVLSR---YLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~---~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
.-|++|||+|+.+++++.+...+ .....+.++.++|...|.|++|+|||+.||+|+.||+|++||..+++++.. .
T Consensus 118 Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~ 195 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--A 195 (480)
T ss_pred EEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--c
Confidence 46899999999999988775544 444556679999999999999999999999999999999999999877665 4
Q ss_pred cccccceEEEEEeCC-----CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC
Q 015301 81 TKALRWTITDTSLSP-----DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ 155 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (409)
+.+|...|++++|.| ..++||+++.||.++|||+..+.+.... .+|..+|+|++|--+|
T Consensus 196 l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l---------------sgHT~~VTCvrwGG~g- 259 (480)
T KOG0271|consen 196 LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL---------------SGHTASVTCVRWGGEG- 259 (480)
T ss_pred ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe---------------ccCccceEEEEEcCCc-
Confidence 567888999999976 5789999999999999999887654332 2677799999997655
Q ss_pred eEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEe-----------------------------------CCCCcEE
Q 015301 156 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA-----------------------------------DETGHLI 200 (409)
Q Consensus 156 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-----------------------------------~~~~~~l 200 (409)
++++|+.|++|++|+...|.+...+++|...|+.++.+ +..++.|
T Consensus 260 liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erl 339 (480)
T KOG0271|consen 260 LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERL 339 (480)
T ss_pred eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCccee
Confidence 79999999999999999999999999999999999987 1123469
Q ss_pred EEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccc
Q 015301 201 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDY 280 (409)
Q Consensus 201 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 280 (409)
++|+.|.++.+|+.. ...+++..+.+|..-|+.+.|+||++++++++.|..|++||.++
T Consensus 340 VSgsDd~tlflW~p~---~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t------------------ 398 (480)
T KOG0271|consen 340 VSGSDDFTLFLWNPF---KSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT------------------ 398 (480)
T ss_pred EEecCCceEEEeccc---ccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC------------------
Confidence 999999999999963 56678888999999999999999999999999999999999998
Q ss_pred ccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceee
Q 015301 281 RWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRD 360 (409)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~ 360 (409)
++.+.+|++|- ..++.++||.|.++|++|+.|.++++|++++.+....+.+|...|.+
T Consensus 399 ----------------Gk~lasfRGHv------~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~ 456 (480)
T KOG0271|consen 399 ----------------GKFLASFRGHV------AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFA 456 (480)
T ss_pred ----------------cchhhhhhhcc------ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEE
Confidence 67788899987 66778899999999999999999999999999999999999999999
Q ss_pred eEEecCcCeEEeecCCCeEEEEe
Q 015301 361 CCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 361 ~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
+.|+|||..+++|+.|..+++|.
T Consensus 457 vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 457 VDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.8e-57 Score=348.37 Aligned_cols=294 Identities=22% Similarity=0.337 Sum_probs=260.2
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
..+.||.++|.|++|+|+|+.||+|+.|.++++||+.+..... ...+|...|.|++|+|||+.||+|+.||+|++||
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 4678999999999999999999999999999999999875544 4677888999999999999999999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-----CCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeE
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-----DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVN 188 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~ 188 (409)
..+++.... ...+|...|++++|.| ..++|++++.||.|+|||+..+.++..+.+|+.+|+
T Consensus 186 pktg~~~g~--------------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VT 251 (480)
T KOG0271|consen 186 PKTGQQIGR--------------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVT 251 (480)
T ss_pred CCCCCcccc--------------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceE
Confidence 988875322 2236777899999977 567999999999999999999999999999999999
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEc-----------CCC--------------
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR-----------RDG-------------- 243 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~-------------- 243 (409)
|+.|- ...+|++|+.|++|++|+. ..+.....+.+|...|+.++.+ |.+
T Consensus 252 CvrwG--G~gliySgS~DrtIkvw~a----~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al 325 (480)
T KOG0271|consen 252 CVRWG--GEGLIYSGSQDRTIKVWRA----LDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKAL 325 (480)
T ss_pred EEEEc--CCceEEecCCCceEEEEEc----cchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHH
Confidence 99995 6679999999999999995 4788999999999999999877 223
Q ss_pred -----------CeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeee
Q 015301 244 -----------RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTL 312 (409)
Q Consensus 244 -----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (409)
..|++|+.|.++.+|+-... .+++..+.+|.
T Consensus 326 ~rY~~~~~~~~erlVSgsDd~tlflW~p~~~---------------------------------kkpi~rmtgHq----- 367 (480)
T KOG0271|consen 326 ERYEAVLKDSGERLVSGSDDFTLFLWNPFKS---------------------------------KKPITRMTGHQ----- 367 (480)
T ss_pred HHHHHhhccCcceeEEecCCceEEEeccccc---------------------------------ccchhhhhchh-----
Confidence 34999999999999996552 24567778887
Q ss_pred eEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 313 IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 313 ~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
..+..+.||||++++|+++.|..|++||.++|+.+.+|++|-.+|+.++|+.|.++|++|+.|.++++|++.+.+.
T Consensus 368 -~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl 443 (480)
T KOG0271|consen 368 -ALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL 443 (480)
T ss_pred -hheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee
Confidence 4455668999999999999999999999999999999999999999999999999999999999999999987543
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.4e-53 Score=331.78 Aligned_cols=284 Identities=25% Similarity=0.314 Sum_probs=256.9
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC--CcEEEEEecCCEEEEEEc
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD--QRFLVYASICAIVNIVDV 114 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~~w~~ 114 (409)
.|-+.+|..+.||+|++.|||||-+|.++||+..+...+. .+.+|...|.++.|+|. +..+|+|+.||++++|++
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 4678999999999999999999999999999998874433 46778889999999997 679999999999999999
Q ss_pred CCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeC
Q 015301 115 GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 194 (409)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~ 194 (409)
.+....... .+|...|..++|+|+|++|++++.|.+-++||+.++..+....+|...|.+++|.
T Consensus 249 ~~e~~l~~l---------------~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~- 312 (459)
T KOG0272|consen 249 SQETPLQDL---------------EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQ- 312 (459)
T ss_pred CCCcchhhh---------------hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEec-
Confidence 876432221 2566689999999999999999999999999999999888889999999999999
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccc
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLR 274 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 274 (409)
++|.++++|+.|..-+|||+| ++.++..+.+|..+|.+++|+|+|..|++|+.|++++|||++.
T Consensus 313 ~DGSL~~tGGlD~~~RvWDlR----tgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~------------ 376 (459)
T KOG0272|consen 313 PDGSLAATGGLDSLGRVWDLR----TGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM------------ 376 (459)
T ss_pred CCCceeeccCccchhheeecc----cCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecc------------
Confidence 999999999999999999988 8999999999999999999999999999999999999999998
Q ss_pred ccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC-CCCEEEEEeCCCeEEEEEccCCceEEEecc
Q 015301 275 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGSSDNSVYIYDLVSGAQVAKLDF 353 (409)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 353 (409)
...+.++.+|.... ..+.|+| .|.+|++++.|++++||...+..+++++.|
T Consensus 377 ----------------------r~~ly~ipAH~nlV------S~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG 428 (459)
T KOG0272|consen 377 ----------------------RSELYTIPAHSNLV------SQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG 428 (459)
T ss_pred ----------------------cccceecccccchh------hheEecccCCeEEEEcccCcceeeecCCCcccchhhcC
Confidence 45577778887433 3446776 789999999999999999999999999999
Q ss_pred CCcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 354 HNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 354 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
|.+.|.++..++|+++++|++.|.++++|.
T Consensus 429 He~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 429 HEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999999999999999999996
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.6e-51 Score=305.66 Aligned_cols=297 Identities=22% Similarity=0.339 Sum_probs=260.1
Q ss_pred CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEE
Q 015301 32 GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (409)
Q Consensus 32 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~ 111 (409)
...+|+||.+.|+++.|++|.+++++++.||.+.|||.-+..+...+... ...|..++|+|.|+++|+|+.|+...|
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~---s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP---SSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC---ceeEEEEEECCCCCeEEecCcCceeEE
Confidence 34799999999999999999999999999999999998877555443322 237999999999999999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC 191 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 191 (409)
|++.+.+...... ......+|.+-+.++.|.+|+ .|++++.|.+..+||+++++.+..+.+|.+.|.++.
T Consensus 124 y~ls~~d~~g~~~---------v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~sls 193 (343)
T KOG0286|consen 124 YPLSTRDAEGNVR---------VSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLS 193 (343)
T ss_pred Eecccccccccce---------eeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEe
Confidence 9998653322211 112234678889999999855 688999999999999999999999999999999999
Q ss_pred EeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccc
Q 015301 192 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNS 271 (409)
Q Consensus 192 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 271 (409)
++|.+++.+++|+-|+..++||+| .+...+.+.+|...|+++.|.|+|.-+++|+.|++.++||++.
T Consensus 194 l~p~~~ntFvSg~cD~~aklWD~R----~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa--------- 260 (343)
T KOG0286|consen 194 LSPSDGNTFVSGGCDKSAKLWDVR----SGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA--------- 260 (343)
T ss_pred cCCCCCCeEEecccccceeeeecc----CcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC---------
Confidence 996699999999999999999988 7899999999999999999999999999999999999999998
Q ss_pred cccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEe
Q 015301 272 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 351 (409)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 351 (409)
++.+..+.... ....+.+++||..|++|++|..|..+.+||.-.++.+..+
T Consensus 261 -------------------------D~~~a~ys~~~----~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L 311 (343)
T KOG0286|consen 261 -------------------------DQELAVYSHDS----IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL 311 (343)
T ss_pred -------------------------CcEEeeeccCc----ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe
Confidence 45566666433 2345567789999999999999999999999999999999
Q ss_pred ccCCcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 352 DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 352 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
.+|...|+++..+|||..|+||++|..++||.
T Consensus 312 ~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 312 AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999999999994
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.6e-48 Score=303.64 Aligned_cols=273 Identities=22% Similarity=0.361 Sum_probs=241.3
Q ss_pred eeEEecCceeEeeccceE---EEEeeecCCCceeecCCCCeEEEEECCC--CCEEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 6 EVNYSGRGRFSAADSCHV---LSRYLPVNGPWKVDGMNSRVYTSQFSND--GSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 6 ~~~~s~dg~~~~~~~~~~---~~~~~~~~~~~~l~~h~~~v~~~~~s~~--~~~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
.+.||+|+..+++++... +|........++|.||.+.|.++.|+|. +..+|||+.||++++|++++...+. .
T Consensus 180 ~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~---~ 256 (459)
T KOG0272|consen 180 GCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ---D 256 (459)
T ss_pred eeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh---h
Confidence 467899999999877553 4443334455689999999999999997 5689999999999999999874444 3
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (409)
..+|...|..++|+|+|++|++++.|.+-++||+.++...... .+|..+|.+++|.+||.++++|
T Consensus 257 l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q---------------EGHs~~v~~iaf~~DGSL~~tG 321 (459)
T KOG0272|consen 257 LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ---------------EGHSKGVFSIAFQPDGSLAATG 321 (459)
T ss_pred hhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh---------------cccccccceeEecCCCceeecc
Confidence 5667779999999999999999999999999999988653222 2677789999999999999999
Q ss_pred EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEc
Q 015301 161 GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (409)
+.|..-+|||++++.++..+.+|..+|.+++|+ |+|..|++|+.|++++|||+| ....+..+.+|.+-|+.+.|+
T Consensus 322 GlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fs-PNGy~lATgs~Dnt~kVWDLR----~r~~ly~ipAH~nlVS~Vk~~ 396 (459)
T KOG0272|consen 322 GLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFS-PNGYHLATGSSDNTCKVWDLR----MRSELYTIPAHSNLVSQVKYS 396 (459)
T ss_pred CccchhheeecccCcEEEEecccccceeeEeEC-CCceEEeecCCCCcEEEeeec----ccccceecccccchhhheEec
Confidence 999999999999999999999999999999999 999999999999999999988 566689999999999999999
Q ss_pred C-CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEee
Q 015301 241 R-DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSP 319 (409)
Q Consensus 241 ~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (409)
| .|.+|++++.|+++++|..++ ..+++.+.||. .-++++
T Consensus 397 p~~g~fL~TasyD~t~kiWs~~~----------------------------------~~~~ksLaGHe------~kV~s~ 436 (459)
T KOG0272|consen 397 PQEGYFLVTASYDNTVKIWSTRT----------------------------------WSPLKSLAGHE------GKVISL 436 (459)
T ss_pred ccCCeEEEEcccCcceeeecCCC----------------------------------cccchhhcCCc------cceEEE
Confidence 8 788999999999999999888 67788899998 456778
Q ss_pred eecCCCCEEEEEeCCCeEEEEE
Q 015301 320 EYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 320 ~~s~~~~~l~~~~~dg~v~i~d 341 (409)
++++|+.++++++.|.++++|.
T Consensus 437 Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 437 DISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EeccCCceEEEeccCceeeecc
Confidence 9999999999999999999995
No 6
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-46 Score=291.77 Aligned_cols=305 Identities=24% Similarity=0.372 Sum_probs=259.0
Q ss_pred EEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe
Q 015301 25 SRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS 104 (409)
Q Consensus 25 ~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 104 (409)
...+|.+..+.+..|.+.|+-+.||++|++||+++.|.+..+|.+.....+.-.....+|..+|..+.||||.++|++++
T Consensus 209 ~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg 288 (519)
T KOG0293|consen 209 RLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG 288 (519)
T ss_pred cccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC
Confidence 34456677788999999999999999999999999999999999887766666667778888999999999999999999
Q ss_pred cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCC-
Q 015301 105 ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAH- 183 (409)
Q Consensus 105 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~- 183 (409)
.+..+.+||+.++......... +...+.+++|.|||..+++|+.|+.+..||+.. ......++-
T Consensus 289 ~~e~~~lwDv~tgd~~~~y~~~--------------~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr 353 (519)
T KOG0293|consen 289 FDEVLSLWDVDTGDLRHLYPSG--------------LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVR 353 (519)
T ss_pred chHheeeccCCcchhhhhcccC--------------cCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccc
Confidence 9999999999999875544332 233699999999999999999999999999864 444444432
Q ss_pred CCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 184 KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 184 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
...|.+++.. ++|+++++.+.|..|++++.. ...... +.....+|++++.+.+++++++.-.+..+.+||++.
T Consensus 354 ~~~v~dlait-~Dgk~vl~v~~d~~i~l~~~e----~~~dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e- 426 (519)
T KOG0293|consen 354 DPKVHDLAIT-YDGKYVLLVTVDKKIRLYNRE----ARVDRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEE- 426 (519)
T ss_pred cceeEEEEEc-CCCcEEEEEecccceeeechh----hhhhhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecch-
Confidence 3568999999 899999999999999999964 222222 334567899999999999999999999999999986
Q ss_pred cccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 264 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
...+..+.||.....+++.+|.-- +..++++|++|+.|+||+..
T Consensus 427 ---------------------------------~~lv~kY~Ghkq~~fiIrSCFgg~---~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 427 ---------------------------------NKLVRKYFGHKQGHFIIRSCFGGG---NDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred ---------------------------------hhHHHHhhcccccceEEEeccCCC---CcceEEecCCCceEEEEEcc
Confidence 466788889988777777666543 56899999999999999999
Q ss_pred CCceEEEeccCCcceeeeEEecCcC-eEEeecCCCeEEEEecCCC
Q 015301 344 SGAQVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 344 ~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~ 387 (409)
+++++.++.||...|++++|+|... ++|+||.||+|+||.....
T Consensus 471 sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 471 SGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 9999999999999999999999776 8999999999999988654
No 7
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.3e-44 Score=299.09 Aligned_cols=338 Identities=17% Similarity=0.315 Sum_probs=271.5
Q ss_pred eeeEEecCceeEeeccceEEEEeeecC----------CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee
Q 015301 5 REVNYSGRGRFSAADSCHVLSRYLPVN----------GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK 74 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~----------~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~ 74 (409)
-|+.|||||+|.+.+....+..+-.++ ...+..||-..|+++.|+.|.++|++|+.|.++++|.++..+.
T Consensus 100 ~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~ 179 (893)
T KOG0291|consen 100 GAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN 179 (893)
T ss_pred ceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccc
Confidence 589999999998887766554443322 2235679999999999999999999999999999999987755
Q ss_pred eeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcc--c--------------------cccc-eeceeee
Q 015301 75 IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR--E--------------------SLAN-VTEIHKG 131 (409)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~--~--------------------~~~~-~~~~~~~ 131 (409)
.......+|...|.+.-|..+...+.+.+.||.+.+|.....-. . ...+ .......
T Consensus 180 -~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k 258 (893)
T KOG0291|consen 180 -LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKK 258 (893)
T ss_pred -cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEe
Confidence 34456788999999999999999999999999999998861100 0 0000 0000000
Q ss_pred eeee------------cCCC--------------------------CcceeeEEEEEcCCCCeEEEEEec-CeEEEEECC
Q 015301 132 LDFS------------ADGD--------------------------EDEFGIFSVKFSTDGQELVAAGSD-NFIYVYDLQ 172 (409)
Q Consensus 132 ~~~~------------~~~~--------------------------~~~~~v~~~~~~~~~~~l~~~~~d-~~i~v~d~~ 172 (409)
.-+. +... -...+|..++|+..|.+|+.|+.. |.+.||+..
T Consensus 259 ~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWq 338 (893)
T KOG0291|consen 259 HYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ 338 (893)
T ss_pred eeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEee
Confidence 0000 0000 123467788888889999988764 789999999
Q ss_pred CCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC
Q 015301 173 ANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD 252 (409)
Q Consensus 173 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 252 (409)
+...+.+.++|...+++++++ |++.++++|+.||.|+|||.+ .+-+..++..|...|+.+.|+..|+.+++.+-|
T Consensus 339 sEsYVlKQQgH~~~i~~l~YS-pDgq~iaTG~eDgKVKvWn~~----SgfC~vTFteHts~Vt~v~f~~~g~~llssSLD 413 (893)
T KOG0291|consen 339 SESYVLKQQGHSDRITSLAYS-PDGQLIATGAEDGKVKVWNTQ----SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLD 413 (893)
T ss_pred ccceeeeccccccceeeEEEC-CCCcEEEeccCCCcEEEEecc----CceEEEEeccCCCceEEEEEEecCCEEEEeecC
Confidence 988888899999999999999 999999999999999999954 888999999999999999999999999999999
Q ss_pred CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe
Q 015301 253 QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332 (409)
Q Consensus 253 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 332 (409)
|+|+.||+... +..+++..... ....+++.+|.|.++.+|+
T Consensus 414 GtVRAwDlkRY----------------------------------rNfRTft~P~p-----~QfscvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 414 GTVRAWDLKRY----------------------------------RNFRTFTSPEP-----IQFSCVAVDPSGELVCAGA 454 (893)
T ss_pred CeEEeeeeccc----------------------------------ceeeeecCCCc-----eeeeEEEEcCCCCEEEeec
Confidence 99999999873 33444444332 1123456778899999999
Q ss_pred CCC-eEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 333 SDN-SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 333 ~dg-~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
.|. .|.+|++.+|+.+..+.||.+||.+++|+|++..|+++|+|.+|++||+-..
T Consensus 455 ~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 455 QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred cceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 885 6999999999999999999999999999999999999999999999999655
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-44 Score=268.07 Aligned_cols=290 Identities=22% Similarity=0.328 Sum_probs=237.5
Q ss_pred ceeecCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeeee--eeeecccccceEEEEEeCCCCcEEEEEecCCEEE
Q 015301 34 WKVDGMNSRVYTSQFSND-GSFFVAASQESNIKVYNVDKNWKIQ--KDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~-~~~l~t~~~d~~i~vw~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 110 (409)
-++.+|++.|+.++..+. -+.+++++.|.++.+|++....... ....+.+|...|..+..++||++.++++.|+.++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence 378899999999999887 4678899999999999987652211 1233556777999999999999999999999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcC--CCCCeE
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA--HKSDVN 188 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~v~ 188 (409)
+||+.+++....+. +|...|.+++|++|.+.+++|+.|.+|.+|+.... +..++.. +.+.|+
T Consensus 89 lWDl~~g~~t~~f~---------------GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVs 152 (315)
T KOG0279|consen 89 LWDLATGESTRRFV---------------GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVS 152 (315)
T ss_pred EEEecCCcEEEEEE---------------ecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEE
Confidence 99999986543322 45667999999999999999999999999998654 4444433 378999
Q ss_pred EEEEeCCC-CcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 189 TVCFADET-GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 189 ~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
|+.|+|.. ..+|++++.|++|++||++ +.+....+.+|.+.++.++++|||.++++|+.||.+.+||++.
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~----~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~----- 223 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLR----NCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE----- 223 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccC----CcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccC-----
Confidence 99999543 7799999999999999976 7788888999999999999999999999999999999999998
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~ 347 (409)
++.+..+... ..+.+++|+|+.-.|+.+.. ..|+|||+.++..
T Consensus 224 -----------------------------~k~lysl~a~-------~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 224 -----------------------------GKNLYSLEAF-------DIVNSLCFSPNRYWLCAATA-TSIKIWDLESKAV 266 (315)
T ss_pred -----------------------------CceeEeccCC-------CeEeeEEecCCceeEeeccC-CceEEEeccchhh
Confidence 3444444433 34567789998777766654 4599999999988
Q ss_pred EEEecc----C-----CcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 348 VAKLDF----H-----NAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 348 ~~~~~~----~-----~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
+..++. . .-...+++|++||..|++|-.|+.|++|.+.
T Consensus 267 v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 267 VEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 877642 1 2245778999999999999999999999875
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.1e-44 Score=265.05 Aligned_cols=282 Identities=19% Similarity=0.279 Sum_probs=233.1
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeee
Q 015301 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGL 132 (409)
Q Consensus 53 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 132 (409)
-+|++++.|.+|++|...+|.+...+.... +.|+.+...|+++.||+++ ...|++||+.+..........
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~d---sqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e------ 80 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPD---SQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFE------ 80 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCc---cceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEe------
Confidence 478999999999999999997776654333 4799999999999999887 567999999998875554433
Q ss_pred eeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEe
Q 015301 133 DFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVW 212 (409)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 212 (409)
+|...|+++.|..+|+.+++|+.||+++|||++...+.+.++ |.++|+++..+ |+...|++|..+|.|++|
T Consensus 81 -------~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlh-pnQteLis~dqsg~irvW 151 (311)
T KOG0315|consen 81 -------GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLH-PNQTELISGDQSGNIRVW 151 (311)
T ss_pred -------ccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEec-CCcceEEeecCCCcEEEE
Confidence 344469999999999999999999999999999976666565 78999999999 788899999999999999
Q ss_pred cccccccCCceeee-eeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccccccccccccee
Q 015301 213 DRRCFISKGRANGV-LMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARR 291 (409)
Q Consensus 213 d~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (409)
|++ ...+... +......|.++...|||.+++.+...|...+|++-.......
T Consensus 152 Dl~----~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~----------------------- 204 (311)
T KOG0315|consen 152 DLG----ENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASE----------------------- 204 (311)
T ss_pred Ecc----CCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcccc-----------------------
Confidence 986 3323222 233446899999999999999999999999999977322221
Q ss_pred ccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC-ceEEEeccCCcceeeeEEecCcCeE
Q 015301 292 LKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG-AQVAKLDFHNAPVRDCCWHPIYPML 370 (409)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l 370 (409)
-.++..++.|. +.+....+|||+++||+++.|.+++||+.++. +....+++|...+.+++||.|++||
T Consensus 205 -----l~P~~k~~ah~------~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~Yl 273 (311)
T KOG0315|consen 205 -----LEPVHKFQAHN------GHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYL 273 (311)
T ss_pred -----ceEhhheeccc------ceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEE
Confidence 23455566666 33334468899999999999999999999988 6677889999999999999999999
Q ss_pred EeecCCCeEEEEecCCCcccC
Q 015301 371 ISSSWDCNIVRWEIPGIGEAP 391 (409)
Q Consensus 371 ~s~~~dg~i~iw~~~~~~~~~ 391 (409)
+||+.|+.+++|+++.+++..
T Consensus 274 vTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 274 VTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred EecCCCCceeecccccCceee
Confidence 999999999999999887643
No 10
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.2e-45 Score=273.34 Aligned_cols=295 Identities=25% Similarity=0.348 Sum_probs=250.5
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
..+.||++.|+.+.|+|+|.+||+|+.|..|.+|++..... ......+|.+.|..+.|.+|++.|++++.|.+++.||
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE--NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc--ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 46789999999999999999999999999999999765433 2234558899999999999999999999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
.++++.....+ .|..-|+.+.-+.-| .++.+++.|+++++||+++.+.+++++ ...+++++.|
T Consensus 119 ~~tG~~~rk~k---------------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f 182 (338)
T KOG0265|consen 119 AETGKRIRKHK---------------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGF 182 (338)
T ss_pred cccceeeehhc---------------cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEe
Confidence 99998765544 334457777755444 456677889999999999988888775 4678999999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccc
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 272 (409)
. ..+..+.+|+-|+.|++||+| .......+.+|.++|+.+..+|+|.++.+-+.|.++++||++...
T Consensus 183 ~-d~s~qv~sggIdn~ikvWd~r----~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~-------- 249 (338)
T KOG0265|consen 183 K-DTSDQVISGGIDNDIKVWDLR----KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA-------- 249 (338)
T ss_pred c-ccccceeeccccCceeeeccc----cCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccC--------
Confidence 9 888999999999999999987 788899999999999999999999999999999999999998732
Q ss_pred ccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec
Q 015301 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD 352 (409)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 352 (409)
+..+++..+.++...... .....+|||++..+.+|+.|..+++||..+...+..+.
T Consensus 250 ----------------------p~~R~v~if~g~~hnfek--nlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp 305 (338)
T KOG0265|consen 250 ----------------------PSQRCVKIFQGHIHNFEK--NLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP 305 (338)
T ss_pred ----------------------CCCceEEEeecchhhhhh--hcceeeccCCCCccccccccceEEEeecccccEEEEcC
Confidence 234557777776532211 12234688899999999999999999999999999999
Q ss_pred cCCcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 353 FHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 353 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
+|.+.|+++.|+|...+|.+++.|.+|++=+
T Consensus 306 Gh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 306 GHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 9999999999999999999999999998744
No 11
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.4e-43 Score=260.30 Aligned_cols=292 Identities=21% Similarity=0.337 Sum_probs=237.4
Q ss_pred CceeecCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCee-eeeeeecccccceEEEEEeCCCCcEEEEEecCCEEE
Q 015301 33 PWKVDGMNSRVYTSQFSND-GSFFVAASQESNIKVYNVDKNWK-IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~-~~~l~t~~~d~~i~vw~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 110 (409)
.+.+.+|.++|..++|+|- |..||+++.|+.|++|+...+.. ..+.....+|+..|.+++|+|.|++|++|+.|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 3578899999999999998 88999999999999999985322 222233347888999999999999999999999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC---eeeeEEcCCCCCe
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN---KCSLRIPAHKSDV 187 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~v 187 (409)
||.-..++...... .++|...|.+++|+++|++||+++.|..|.||.+..+ ++...++.|...|
T Consensus 87 Iw~k~~~efecv~~-------------lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDV 153 (312)
T KOG0645|consen 87 IWKKEDGEFECVAT-------------LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDV 153 (312)
T ss_pred EeecCCCceeEEee-------------eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccc
Confidence 99887665443322 2467788999999999999999999999999998744 5667789999999
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
..+.|+ |...+|++++.|.+|++|+-.. .....+...+.+|...|.+++|++.|..|++++.|++++||-....-.
T Consensus 154 K~V~WH-Pt~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~-- 229 (312)
T KOG0645|consen 154 KHVIWH-PTEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS-- 229 (312)
T ss_pred cEEEEc-CCcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc--
Confidence 999999 7889999999999999998532 345678899999999999999999999999999999999998653100
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC--
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG-- 345 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~-- 345 (409)
..|. +..+.+.+. ...|++++.|+.|++|.-...
T Consensus 230 ------------------------------------~~~s------r~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d 265 (312)
T KOG0645|consen 230 ------------------------------------GMHS------RALYDVPWD--NGVIASGGGDDAIRLFKESDSPD 265 (312)
T ss_pred ------------------------------------hhcc------cceEeeeec--ccceEeccCCCEEEEEEecCCCC
Confidence 0011 233444454 457999999999999986542
Q ss_pred ce----E-EEeccCCcceeeeEEecC-cCeEEeecCCCeEEEEecC
Q 015301 346 AQ----V-AKLDFHNAPVRDCCWHPI-YPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 346 ~~----~-~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~ 385 (409)
++ + ..-..|...|++++|+|. ...|++++.||.|++|.+.
T Consensus 266 ~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 266 EPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 11 1 233568889999999995 5599999999999999875
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-43 Score=282.22 Aligned_cols=294 Identities=20% Similarity=0.279 Sum_probs=247.4
Q ss_pred eeecCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeee-------ee----ecccccceEEEEEeCCCCcEEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNWKIQK-------DI----ETKALRWTITDTSLSPDQRFLVY 102 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~-------~~----~~~~~~~~v~~~~~s~~~~~l~~ 102 (409)
++..|..+|.+.+|+|-.. .|++++.|-+.++|++........ .. ........|++++|+.+|..||+
T Consensus 173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~Lat 252 (524)
T KOG0273|consen 173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLAT 252 (524)
T ss_pred eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEE
Confidence 4555999999999999776 899999999999999875211100 00 11112347999999999999999
Q ss_pred EecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcC
Q 015301 103 ASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA 182 (409)
Q Consensus 103 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 182 (409)
|+.||.+++|+......... ..|.+||.++.|+..|.+|++++.|+++.+||..+++..+.+..
T Consensus 253 G~~~G~~riw~~~G~l~~tl----------------~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~ 316 (524)
T KOG0273|consen 253 GSEDGEARIWNKDGNLISTL----------------GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF 316 (524)
T ss_pred eecCcEEEEEecCchhhhhh----------------hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee
Confidence 99999999999876643222 14566899999999999999999999999999999999999998
Q ss_pred CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 183 HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 183 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
|..+-.++.|- +...+++++.||.|+++.+. ...+..++.+|.+.|.++.|+|.+.+|++++.|++++||+...
T Consensus 317 ~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~----~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 317 HSAPALDVDWQ--SNDEFATSSTDGCIHVCKVG----EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred ccCCccceEEe--cCceEeecCCCceEEEEEec----CCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 98887889996 66789999999999999964 7788899999999999999999999999999999999999876
Q ss_pred CcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCC---------CCEEEEEeC
Q 015301 263 MSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA---------QKYIYTGSS 333 (409)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---------~~~l~~~~~ 333 (409)
......+..|.. .++...|+|. +..+++++.
T Consensus 391 ----------------------------------~~~~~~l~~Hsk------ei~t~~wsp~g~v~~n~~~~~~l~sas~ 430 (524)
T KOG0273|consen 391 ----------------------------------SNSVHDLQAHSK------EIYTIKWSPTGPVTSNPNMNLMLASASF 430 (524)
T ss_pred ----------------------------------Ccchhhhhhhcc------ceeeEeecCCCCccCCCcCCceEEEeec
Confidence 345566666662 2333344443 458999999
Q ss_pred CCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 334 DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 334 dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
|++|++||+..+.++.++..|..+|.+++|+|++++|++|+.||.|.+|+...++..
T Consensus 431 dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~ 487 (524)
T KOG0273|consen 431 DSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLV 487 (524)
T ss_pred CCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhee
Confidence 999999999999999999999999999999999999999999999999999876543
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.4e-44 Score=282.38 Aligned_cols=287 Identities=22% Similarity=0.358 Sum_probs=247.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~ 118 (409)
-..+|..+.|.|+|+.|++|+..|.+.+|+..+ .........|+.+|.++.|++++.++++|+.+|.|++|+..-..
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~---fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS---FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCce---eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh
Confidence 356899999999999999999999999999742 23334467799999999999999999999999999999986554
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCc
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGH 198 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 198 (409)
...... .|...|++++|+|+...|++++.||+|+|||....+....+.+|.-.|.+++|+ |...
T Consensus 172 Vk~~~a---------------hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH-P~kg 235 (464)
T KOG0284|consen 172 VKIIQA---------------HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH-PTKG 235 (464)
T ss_pred hHHhhH---------------hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC-Cccc
Confidence 432222 223479999999999999999999999999999988888899999999999999 7888
Q ss_pred EEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccc
Q 015301 199 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDW 278 (409)
Q Consensus 199 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 278 (409)
+|++++.|..|++||.| ++.++.++.+|+..|..+.|+|++++|++++.|..++++|++++
T Consensus 236 LiasgskDnlVKlWDpr----Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m--------------- 296 (464)
T KOG0284|consen 236 LIASGSKDNLVKLWDPR----SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM--------------- 296 (464)
T ss_pred eeEEccCCceeEeecCC----CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---------------
Confidence 99999999999999976 89999999999999999999999999999999999999999963
Q ss_pred ccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC-CCCEEEEEeCCCeEEEEEccCCceEEEe-ccCCc
Q 015301 279 DYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGSSDNSVYIYDLVSGAQVAKL-DFHNA 356 (409)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~~ 356 (409)
+.+..+++|... +.+..|+| ...+|.+|+.||.|..|.+...+++..+ .+|..
T Consensus 297 -------------------kEl~~~r~Hkkd------v~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~ 351 (464)
T KOG0284|consen 297 -------------------KELFTYRGHKKD------VTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDG 351 (464)
T ss_pred -------------------HHHHHhhcchhh------heeeccccccccceeeccCCCceEEEeccccccccCCCccccc
Confidence 456777888732 23334454 4678999999999999999877776666 47999
Q ss_pred ceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 357 PVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 357 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
.|++++|+|-|.+|++|+.|.++++|.-....
T Consensus 352 ~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 352 EIWSLAYHPLGHILATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred ceeeeeccccceeEeecCCCcceeeeccCCCC
Confidence 99999999999999999999999999765443
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9e-44 Score=273.89 Aligned_cols=292 Identities=24% Similarity=0.351 Sum_probs=261.4
Q ss_pred CCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEE
Q 015301 31 NGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (409)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 110 (409)
...+.+.||..+|+.+-|+|+-..+++++.|++|++||..+++. ...+++|...+.+++|+..|++|++++.|-.+.
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~---e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL---ERSLRGHTDSVFDISFDASGKYLATCSSDLSAK 175 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh---hhhhhccccceeEEEEecCccEEEecCCccchh
Confidence 45568899999999999999999999999999999999999855 345778888999999999999999999999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEE
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTV 190 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~ 190 (409)
+||.++.... .... .+|...|.+++|-|.|.++++++.|.+|+.|++.++.++.++++|...|..+
T Consensus 176 LWd~~~~~~c-~ks~-------------~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v 241 (406)
T KOG0295|consen 176 LWDFDTFFRC-IKSL-------------IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMV 241 (406)
T ss_pred heeHHHHHHH-HHHh-------------cCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEE
Confidence 9999764211 1111 1445579999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC---------------CCeEEEEeCCCcE
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD---------------GRYFISNGKDQTT 255 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i 255 (409)
..+ .++.++++++.|.++++|-+ .+..+...++.|..+|.+++|.|. +.++.+++.|++|
T Consensus 242 ~v~-~DGti~As~s~dqtl~vW~~----~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI 316 (406)
T KOG0295|consen 242 RVN-QDGTIIASCSNDQTLRVWVV----ATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI 316 (406)
T ss_pred Eec-CCeeEEEecCCCceEEEEEe----ccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceE
Confidence 999 99999999999999999995 477788889999999999999762 2589999999999
Q ss_pred EEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC
Q 015301 256 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 335 (409)
Q Consensus 256 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 335 (409)
++||+.+ +.++.++.+|. ..+..++|+|.|+||+++.+|+
T Consensus 317 k~wdv~t----------------------------------g~cL~tL~ghd------nwVr~~af~p~Gkyi~ScaDDk 356 (406)
T KOG0295|consen 317 KIWDVST----------------------------------GMCLFTLVGHD------NWVRGVAFSPGGKYILSCADDK 356 (406)
T ss_pred EEEeccC----------------------------------CeEEEEEeccc------ceeeeeEEcCCCeEEEEEecCC
Confidence 9999998 67788999998 4455668999999999999999
Q ss_pred eEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 336 SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 336 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
++++||+++++++.++..|...|+++.|+.+..+++||+-|..+++|.-
T Consensus 357 tlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 357 TLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999999999999999999999999999999973
No 15
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.8e-42 Score=275.86 Aligned_cols=345 Identities=18% Similarity=0.229 Sum_probs=260.7
Q ss_pred eeeEEecCcee-EeeccceEEEEeeecCCCc----eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 5 REVNYSGRGRF-SAADSCHVLSRYLPVNGPW----KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 5 ~~~~~s~dg~~-~~~~~~~~~~~~~~~~~~~----~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
.++.|-|..-| +++++.+....++. .+|+ .+..|..-|+|+.|+|||+++|+++.||+|.+||-.+++.+..+-
T Consensus 151 ns~~~KpsRPfRi~T~sdDn~v~ffe-GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~ 229 (603)
T KOG0318|consen 151 NSVDFKPSRPFRIATGSDDNTVAFFE-GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELE 229 (603)
T ss_pred eeeeccCCCceEEEeccCCCeEEEee-CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEec
Confidence 34455555544 34444444444443 3334 456899999999999999999999999999999999998888877
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceece----eeeeeee--------------------
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEI----HKGLDFS-------------------- 135 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~----~~~~~~~-------------------- 135 (409)
...+|++.|.+++|+||++.+++++.|.+++|||+.+.+......+... ..+.-+.
T Consensus 230 ~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d 309 (603)
T KOG0318|consen 230 DSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSD 309 (603)
T ss_pred CCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccC
Confidence 7788999999999999999999999999999999998876544333222 1111111
Q ss_pred ----cCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE-cCCCCCeEEEEEeCCCCcEEEEeeCCCeEE
Q 015301 136 ----ADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI-PAHKSDVNTVCFADETGHLIFSGSDDSLCK 210 (409)
Q Consensus 136 ----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 210 (409)
....+|...|+++..+|++++|++|+.||.|.-|+..++..-... +.|...|.+++-+ +...+++.+.|.+++
T Consensus 310 ~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~--~~~~~~t~g~Dd~l~ 387 (603)
T KOG0318|consen 310 PSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS--ESGELFTIGWDDTLR 387 (603)
T ss_pred CChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeec--CCCcEEEEecCCeEE
Confidence 011279999999999999999999999999999999988765443 6799999999987 335677888999999
Q ss_pred EecccccccCCc----------e-----------------eeeeecc--------ccceeEEEEcCCCCeEEEEeCCCcE
Q 015301 211 VWDRRCFISKGR----------A-----------------NGVLMGH--------LEGITFIDSRRDGRYFISNGKDQTT 255 (409)
Q Consensus 211 iwd~~~~~~~~~----------~-----------------~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~dg~i 255 (409)
+.++........ . +..++.+ .-...+++++|+++.++.|+.|+.|
T Consensus 388 ~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkv 467 (603)
T KOG0318|consen 388 VISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKV 467 (603)
T ss_pred EEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceE
Confidence 997631100000 0 0011111 1234678899999999999999999
Q ss_pred EEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC
Q 015301 256 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 335 (409)
Q Consensus 256 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 335 (409)
++|.+..... ........|. ..+..++||||+.+||+|...+
T Consensus 468 hvysl~g~~l--------------------------------~ee~~~~~h~------a~iT~vaySpd~~yla~~Da~r 509 (603)
T KOG0318|consen 468 HVYSLSGDEL--------------------------------KEEAKLLEHR------AAITDVAYSPDGAYLAAGDASR 509 (603)
T ss_pred EEEEecCCcc--------------------------------cceeeeeccc------CCceEEEECCCCcEEEEeccCC
Confidence 9999876321 1111223333 4456678999999999999999
Q ss_pred eEEEEEccCCceE-EEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 336 SVYIYDLVSGAQV-AKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 336 ~v~i~d~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
.+.+||+.+.+.. ..+..|...|.+++|+|+..++|||+.|.+|.||++....+.
T Consensus 510 kvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 510 KVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred cEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence 9999999988763 334459999999999999999999999999999999876554
No 16
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.7e-42 Score=288.88 Aligned_cols=340 Identities=17% Similarity=0.251 Sum_probs=264.2
Q ss_pred ceeeEEecCceeEeeccce----EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 4 GREVNYSGRGRFSAADSCH----VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~----~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
+..++|+..|.+++-++.. .+|.+....-..+.+||...++|+++||||+++|||+.||.|+|||..++.+...
T Consensus 310 I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vT-- 387 (893)
T KOG0291|consen 310 ILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVT-- 387 (893)
T ss_pred eeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEE--
Confidence 4567777778888876643 6777777777778899999999999999999999999999999999999877665
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
...|+..|+.+.|+..++.+++++.||+|+.||+...+.-+....+.+. ...|++..|.|..+.+
T Consensus 388 -FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~--------------QfscvavD~sGelV~A 452 (893)
T KOG0291|consen 388 -FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI--------------QFSCVAVDPSGELVCA 452 (893)
T ss_pred -eccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCce--------------eeeEEEEcCCCCEEEe
Confidence 4567779999999999999999999999999999887665544443322 4788999999998888
Q ss_pred EEec-CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEE
Q 015301 160 AGSD-NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 238 (409)
Q Consensus 160 ~~~d-~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (409)
|+.| -.|.+|++++|+.+-.+.+|.++|.+++|+ +.++.|+++++|.+|++||+- .......++ .+...+..++
T Consensus 453 G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~-~~~~~LaS~SWDkTVRiW~if---~s~~~vEtl-~i~sdvl~vs 527 (893)
T KOG0291|consen 453 GAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFS-PDGSLLASGSWDKTVRIWDIF---SSSGTVETL-EIRSDVLAVS 527 (893)
T ss_pred eccceEEEEEEEeecCeeeehhcCCCCcceeeEEc-cccCeEEeccccceEEEEEee---ccCceeeeE-eeccceeEEE
Confidence 8876 479999999999999999999999999999 899999999999999999974 233333433 4667899999
Q ss_pred EcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEe
Q 015301 239 SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS 318 (409)
Q Consensus 239 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (409)
|.|+|+.|+++.-||.|.+||.....+............ .......+.... .........
T Consensus 528 frPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~------------------gR~~~D~~ta~~--sa~~K~Ftt 587 (893)
T KOG0291|consen 528 FRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSG------------------GRKETDRITAEN--SAKGKTFTT 587 (893)
T ss_pred EcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccc------------------cccccceeehhh--cccCCceEE
Confidence 999999999999999999999987554433322110000 000001111110 111244567
Q ss_pred eeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc---------------------------------------------
Q 015301 319 PEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF--------------------------------------------- 353 (409)
Q Consensus 319 ~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--------------------------------------------- 353 (409)
+++|+||.++++|+....|++|++.++-.++.++-
T Consensus 588 i~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~ 667 (893)
T KOG0291|consen 588 ICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGV 667 (893)
T ss_pred EEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCcc
Confidence 78999999999999999999999987655444321
Q ss_pred -----------CCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 354 -----------HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 354 -----------~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
..-.|..+.|+|.|+.++.++..| |.||.+.+
T Consensus 668 ~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEG-l~IYsld~ 710 (893)
T KOG0291|consen 668 QRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEG-LLIYSLDT 710 (893)
T ss_pred ccCCccccccCceEEEEEEEECCCcCeeeeecccc-eEEEecCC
Confidence 012478899999999999999887 56777744
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.7e-43 Score=277.25 Aligned_cols=279 Identities=20% Similarity=0.315 Sum_probs=246.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (409)
..|++++|+.+|..||+|+.||.+++|+.... ....+..|+++|.++.|+.+|.+|++++.|+++.+||..++...
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~----l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGN----LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCch----hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE
Confidence 67999999999999999999999999998765 33346678889999999999999999999999999999888765
Q ss_pred cccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE
Q 015301 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI 200 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 200 (409)
...... ..+-..+.|-.+. .+++.+.|+.|+|+.+....++.++.+|.++|.++.|+ |.+.+|
T Consensus 312 q~f~~~---------------s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n-~tg~LL 374 (524)
T KOG0273|consen 312 QQFEFH---------------SAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN-PTGSLL 374 (524)
T ss_pred Eeeeec---------------cCCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCceEEEEEC-CCCceE
Confidence 444332 2234668886544 58899999999999999999999999999999999999 899999
Q ss_pred EEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC---------CeEEEEeCCCcEEEeeCCCCcccccccc
Q 015301 201 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG---------RYFISNGKDQTTKLWDIRKMSSNTTDNS 271 (409)
Q Consensus 201 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 271 (409)
++++.|++++||.. ........+.+|...|..+.|+|+| ..+++++.|++|++||+..
T Consensus 375 aS~SdD~TlkiWs~----~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~--------- 441 (524)
T KOG0273|consen 375 ASCSDDGTLKIWSM----GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES--------- 441 (524)
T ss_pred EEecCCCeeEeeec----CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC---------
Confidence 99999999999995 4778888999999999999999954 4689999999999999988
Q ss_pred cccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEe
Q 015301 272 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 351 (409)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 351 (409)
+.++..|..|. ..+++++|||+|+++|+|+.||.|.+|+.++++..+.+
T Consensus 442 -------------------------gv~i~~f~kH~------~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 442 -------------------------GVPIHTLMKHQ------EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY 490 (524)
T ss_pred -------------------------CceeEeeccCC------CceEEEEecCCCcEEEecCCCCeeEeccccchheeEee
Confidence 67788888887 56778899999999999999999999999999999999
Q ss_pred ccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 352 DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 352 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
.+ .+.|..++|+.+|.+|..+-.||.+.+-|+.
T Consensus 491 ~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 491 QG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 85 5669999999999999999999999998874
No 18
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=9e-45 Score=289.46 Aligned_cols=301 Identities=21% Similarity=0.349 Sum_probs=256.4
Q ss_pred EEeeecCCCceeecCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE
Q 015301 25 SRYLPVNGPWKVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA 103 (409)
Q Consensus 25 ~~~~~~~~~~~l~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 103 (409)
.-++|......+.||+..|+++.|.| .+.+|++++.|+.|+||++-...... ....+|..+|.+++|+++|..++++
T Consensus 199 rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~l--rtf~gH~k~Vrd~~~s~~g~~fLS~ 276 (503)
T KOG0282|consen 199 RCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCL--RTFKGHRKPVRDASFNNCGTSFLSA 276 (503)
T ss_pred eeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCccee--hhhhcchhhhhhhhccccCCeeeee
Confidence 45667777789999999999999999 89999999999999999987743332 2466788899999999999999999
Q ss_pred ecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEEEecCeEEEEECCCCeeeeEEcC
Q 015301 104 SICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKCSLRIPA 182 (409)
Q Consensus 104 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 182 (409)
+.|+.+++||++++++........ .++++.|+|++ +.+++|+.|+.|+.||+++++.++.+..
T Consensus 277 sfD~~lKlwDtETG~~~~~f~~~~----------------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~ 340 (503)
T KOG0282|consen 277 SFDRFLKLWDTETGQVLSRFHLDK----------------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR 340 (503)
T ss_pred ecceeeeeeccccceEEEEEecCC----------------CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh
Confidence 999999999999998866554433 58999999988 8899999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeee-eeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 183 HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV-LMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 183 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
|-+.|..+.|. +++..+++.+.|++++||+.+ ....++. ...+.....++..+|++.+++.-+.|+.|.++.+.
T Consensus 341 hLg~i~~i~F~-~~g~rFissSDdks~riWe~~----~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~ 415 (503)
T KOG0282|consen 341 HLGAILDITFV-DEGRRFISSSDDKSVRIWENR----IPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTV 415 (503)
T ss_pred hhhheeeeEEc-cCCceEeeeccCccEEEEEcC----CCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecc
Confidence 99999999999 899999999999999999976 3332222 22334456789999999999999999999999876
Q ss_pred CCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEE
Q 015301 262 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d 341 (409)
.... ...-..+++|..... ...+.|||||++|++|+.||.+.+||
T Consensus 416 ~~~r-------------------------------~nkkK~feGh~vaGy----s~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 416 PPFR-------------------------------LNKKKRFEGHSVAGY----SCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred cccc-------------------------------cCHhhhhcceeccCc----eeeEEEcCCCCeEEeecCCccEEEee
Confidence 5221 123456677765433 34567999999999999999999999
Q ss_pred ccCCceEEEeccCCcceeeeEEecCcC-eEEeecCCCeEEEEe
Q 015301 342 LVSGAQVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWE 383 (409)
Q Consensus 342 ~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~ 383 (409)
.++-+.+..+++|.+++..+.|+|... .+||++.||.|++|+
T Consensus 461 wkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 461 WKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred chhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999999766 899999999999996
No 19
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.3e-43 Score=293.75 Aligned_cols=343 Identities=16% Similarity=0.213 Sum_probs=278.3
Q ss_pred eeEEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCC--EEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 6 EVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGS--FFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 6 ~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~--~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
-++|+|.|..+++++.+ .+|++........|+||.+.|.++.|.|+-. .|++|..|+++++||+.+... ....
T Consensus 110 ~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t--cl~~ 187 (775)
T KOG0319|consen 110 TMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT--CLHT 187 (775)
T ss_pred EEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch--HHHH
Confidence 36889999888887655 5666666666679999999999999999765 488999999999999987644 3334
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecC------------CC---------
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSAD------------GD--------- 139 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~------------~~--------- 139 (409)
...|.+.|++++|++|+..+++++.|..+.+||+.+-+........+...+..+... +.
T Consensus 188 ~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~ 267 (775)
T KOG0319|consen 188 MILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDS 267 (775)
T ss_pred HHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEec
Confidence 566888999999999999999999999999999965443222221111111111111 00
Q ss_pred --------------------------------------------------------------------------------
Q 015301 140 -------------------------------------------------------------------------------- 139 (409)
Q Consensus 140 -------------------------------------------------------------------------------- 139 (409)
T Consensus 268 es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~ 347 (775)
T KOG0319|consen 268 ESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPE 347 (775)
T ss_pred ccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCc
Confidence
Q ss_pred ---------------CcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCe----eeeEEcCCCCCeEEEEEeCCCCcEE
Q 015301 140 ---------------EDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK----CSLRIPAHKSDVNTVCFADETGHLI 200 (409)
Q Consensus 140 ---------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l 200 (409)
+|...|.++....+|.+|++|+.|.++++|.++++. ++....+|+..|.+++++.....+|
T Consensus 348 lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asff 427 (775)
T KOG0319|consen 348 LRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFF 427 (775)
T ss_pred eEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEE
Confidence 688889999866678899999999999999885443 3445678999999999986677899
Q ss_pred EEeeCCCeEEEecccccccCCc-----eeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccc
Q 015301 201 FSGSDDSLCKVWDRRCFISKGR-----ANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 275 (409)
Q Consensus 201 ~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 275 (409)
++++.|+++++|+++...++.. .......|...|++++++|+.+++++|+.|++.++|+++.
T Consensus 428 vsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~------------- 494 (775)
T KOG0319|consen 428 VSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ------------- 494 (775)
T ss_pred EEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC-------------
Confidence 9999999999999874111111 1123457999999999999999999999999999999986
Q ss_pred cccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCC
Q 015301 276 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHN 355 (409)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 355 (409)
.....++.+|. +.+|++.|+|..+.++++|.|++|+||.+.+..++.++.||.
T Consensus 495 ---------------------~~l~~vLsGH~------RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~ 547 (775)
T KOG0319|consen 495 ---------------------LRLLGVLSGHT------RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHT 547 (775)
T ss_pred ---------------------ceEEEEeeCCc------cceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCcc
Confidence 56678899998 678899999999999999999999999999999999999999
Q ss_pred cceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 356 APVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 356 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
..|..+.|-.+++.|+|++.||.|++|++.+.+-.
T Consensus 548 ~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 548 SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE 582 (775)
T ss_pred ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh
Confidence 99999999999999999999999999999887643
No 20
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.5e-42 Score=264.81 Aligned_cols=289 Identities=18% Similarity=0.272 Sum_probs=246.5
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
..+.||.+.|.|+++.|-+.+|++|+.|++|+|||+.++..... ..+|...|..+++|+...||++++.|+.|+.||
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt---ltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT---LTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe---ecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 46789999999999999999999999999999999999954443 556777999999999999999999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEe
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 193 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~ 193 (409)
++..+...... +|-..|.+++.+|.-..|++|+.|..+++||+++...+..+.+|..+|..+.+.
T Consensus 222 Le~nkvIR~Yh---------------GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 222 LEYNKVIRHYH---------------GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQ 286 (460)
T ss_pred chhhhhHHHhc---------------cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEee
Confidence 99887654332 566689999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccc
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 273 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 273 (409)
+-+..+++|+.|++|++||++ .++....+..|+..+.+++.+|....+++++.|. ++-|++..
T Consensus 287 -~~dpqvit~S~D~tvrlWDl~----agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~----------- 349 (460)
T KOG0285|consen 287 -PTDPQVITGSHDSTVRLWDLR----AGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPE----------- 349 (460)
T ss_pred -cCCCceEEecCCceEEEeeec----cCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCc-----------
Confidence 556678999999999999987 8888899999999999999999999999999885 99999877
Q ss_pred cccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc
Q 015301 274 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF 353 (409)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 353 (409)
+..+..+.+|.... ..++.. ...++++|+++|.+.+||.+++-..+..+.
T Consensus 350 -----------------------g~f~~nlsgh~~ii------ntl~~n-sD~v~~~G~dng~~~fwdwksg~nyQ~~~t 399 (460)
T KOG0285|consen 350 -----------------------GEFLQNLSGHNAII------NTLSVN-SDGVLVSGGDNGSIMFWDWKSGHNYQRGQT 399 (460)
T ss_pred -----------------------cchhhcccccccee------eeeeec-cCceEEEcCCceEEEEEecCcCcccccccc
Confidence 44455566666332 222322 246899999999999999999865444421
Q ss_pred --------CCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 354 --------HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 354 --------~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
.+..|.+.+|...+..|++|..|.+|++|.-++.
T Consensus 400 ~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 400 IVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred cccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 2457899999999999999999999999986654
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.2e-42 Score=297.84 Aligned_cols=293 Identities=32% Similarity=0.520 Sum_probs=252.7
Q ss_pred eeecC-CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 35 KVDGM-NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 35 ~l~~h-~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
.+.+| ...|.|+.|+++|+++++++.|+.+++|+...... .......+|...|.+++|+|+++++++++.|++|++||
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 44444 78999999999999999999999999999966642 12223367888999999999999999999999999999
Q ss_pred cCCC-ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 114 VGSS-ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 114 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
+... ...... .+|...|++++|+|+++++++|+.|++|++||+++++++..+.+|...|++++|
T Consensus 232 ~~~~~~~~~~l---------------~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f 296 (456)
T KOG0266|consen 232 LKDDGRNLKTL---------------KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAF 296 (456)
T ss_pred ccCCCeEEEEe---------------cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEE
Confidence 9433 322211 256778999999999999999999999999999999999999999999999999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCc--eeeeeeccccc--eeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccc
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGR--ANGVLMGHLEG--ITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTT 268 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 268 (409)
+ +++++|++++.|+.|++||+. .+. +...+..+... ++++.|+|++.++++++.|+.+++||++.
T Consensus 297 ~-~d~~~l~s~s~d~~i~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~------ 365 (456)
T KOG0266|consen 297 S-PDGNLLVSASYDGTIRVWDLE----TGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRS------ 365 (456)
T ss_pred C-CCCCEEEEcCCCccEEEEECC----CCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccC------
Confidence 9 999999999999999999975 555 44556665555 99999999999999999999999999998
Q ss_pred ccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceE
Q 015301 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV 348 (409)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~ 348 (409)
...+..+.+|... ..+.+++..++.+.++++|+.|+.|++||+.++..+
T Consensus 366 ----------------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~ 414 (456)
T KOG0266|consen 366 ----------------------------GKSVGTYTGHSNL---VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGIL 414 (456)
T ss_pred ----------------------------CcceeeecccCCc---ceeEecccccCCCCeEEEEeCCceEEEEeCCccchh
Confidence 4556667777654 266777788899999999999999999999999999
Q ss_pred EEeccC-CcceeeeEEecCcCeEEeec--CCCeEEEEecC
Q 015301 349 AKLDFH-NAPVRDCCWHPIYPMLISSS--WDCNIVRWEIP 385 (409)
Q Consensus 349 ~~~~~~-~~~v~~~~~s~~~~~l~s~~--~dg~i~iw~~~ 385 (409)
..+.+| ...+..+.|+|...++++++ .|+.+++|..+
T Consensus 415 ~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 415 QRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred hhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999999 88999999999999999998 78999999864
No 22
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.5e-41 Score=259.17 Aligned_cols=315 Identities=15% Similarity=0.163 Sum_probs=254.1
Q ss_pred eeEEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecc
Q 015301 6 EVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK 82 (409)
Q Consensus 6 ~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~ 82 (409)
+++.+|+-.+.++++.+ ++|+.-.......+.+|+..|+|+.||.||.+||||+.+|.|+||+..++.....+....
T Consensus 69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~ 148 (399)
T KOG0296|consen 69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV 148 (399)
T ss_pred EEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeeccc
Confidence 57888988899997766 556655556667899999999999999999999999999999999999986665554222
Q ss_pred cccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe
Q 015301 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (409)
..|.-+.|+|.+..|+.|+.||.+.+|.+.++...... .+|..++++-.|.|+|+.++++..
T Consensus 149 ---~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~---------------~Gh~~~ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 149 ---EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVM---------------SGHNSPCTCGEFIPDGKRILTGYD 210 (399)
T ss_pred ---CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEe---------------cCCCCCcccccccCCCceEEEEec
Confidence 26888999999999999999999999999886332222 246668999999999999999999
Q ss_pred cCeEEEEECCCCeeeeEEcC-CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee--------ccccc
Q 015301 163 DNFIYVYDLQANKCSLRIPA-HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM--------GHLEG 233 (409)
Q Consensus 163 d~~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------~~~~~ 233 (409)
||+|++||..+++++..+.. ......++.++ ..+..++.|+.++.+++-+. ..++.+.... .+...
T Consensus 211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~-~~~~~~~~g~~e~~~~~~~~----~sgKVv~~~n~~~~~l~~~~e~~ 285 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLN-LAGSTLTKGNSEGVACGVNN----GSGKVVNCNNGTVPELKPSQEEL 285 (399)
T ss_pred CceEEEEecCCCceeEEecccccCcCCccccc-cccceeEeccCCccEEEEcc----ccceEEEecCCCCccccccchhh
Confidence 99999999999999888752 24466788888 88899999999999888873 3555544444 34444
Q ss_pred eeEEEE---cCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeeccccee
Q 015301 234 ITFIDS---RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR 310 (409)
Q Consensus 234 v~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (409)
+.++.+ +..=.+.++|+-||+|.|||+.. ..++..-.|...
T Consensus 286 ~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~-----------------------------------~~~R~~c~he~~- 329 (399)
T KOG0296|consen 286 DESVESIPSSSKLPLAACGSVDGTIAIYDLAA-----------------------------------STLRHICEHEDG- 329 (399)
T ss_pred hhhhhhcccccccchhhcccccceEEEEeccc-----------------------------------chhheeccCCCc-
Confidence 555554 44556789999999999999987 223333334422
Q ss_pred eeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 311 TLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 311 ~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
+..+.|-+ ..+|++++.+|.|+.||.++|++..++.+|...|.+++.+|+.++++|+|.|++.+|++++
T Consensus 330 -----V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 330 -----VTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred -----eEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 23344555 5789999999999999999999999999999999999999999999999999999999875
No 23
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.3e-41 Score=244.70 Aligned_cols=293 Identities=18% Similarity=0.265 Sum_probs=243.7
Q ss_pred eeEeeccceEEEEeee---cCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEE
Q 015301 14 RFSAADSCHVLSRYLP---VNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITD 90 (409)
Q Consensus 14 ~~~~~~~~~~~~~~~~---~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~ 90 (409)
.++++.+.+...+++. ..+..++....+.|+.+...||++.||+++. ..|++||+.++... ......+|...|++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-PVATFEGHTKNVTA 88 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-ceeEEeccCCceEE
Confidence 4677777765555544 4455677778899999999999999999985 57999999988443 45566778889999
Q ss_pred EEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEE
Q 015301 91 TSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYD 170 (409)
Q Consensus 91 ~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 170 (409)
+.|..+|+.+++|+.||+++|||++.....+.... ..+|+++..+|+...|++|..+|.|++||
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~----------------~spVn~vvlhpnQteLis~dqsg~irvWD 152 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH----------------NSPVNTVVLHPNQTELISGDQSGNIRVWD 152 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhccC----------------CCCcceEEecCCcceEEeecCCCcEEEEE
Confidence 99999999999999999999999998665554443 33799999999999999999999999999
Q ss_pred CCCCeeeeEE-cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccccc--ccCCceeeeeeccccceeEEEEcCCCCeEE
Q 015301 171 LQANKCSLRI-PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF--ISKGRANGVLMGHLEGITFIDSRRDGRYFI 247 (409)
Q Consensus 171 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 247 (409)
+.+..+...+ +....+|.++... +++.+++++...|..++|++-.. .....++..++.|.+.+..+.+||++++|+
T Consensus 153 l~~~~c~~~liPe~~~~i~sl~v~-~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~la 231 (311)
T KOG0315|consen 153 LGENSCTHELIPEDDTSIQSLTVM-PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLA 231 (311)
T ss_pred ccCCccccccCCCCCcceeeEEEc-CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEE
Confidence 9887665544 4556789999999 99999999999999999997531 223446667889999999999999999999
Q ss_pred EEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCE
Q 015301 248 SNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKY 327 (409)
Q Consensus 248 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 327 (409)
+++.|.+++||+.++. -+.-..+++|. +..|..+||.||+|
T Consensus 232 t~ssdktv~iwn~~~~---------------------------------~kle~~l~gh~------rWvWdc~FS~dg~Y 272 (311)
T KOG0315|consen 232 TCSSDKTVKIWNTDDF---------------------------------FKLELVLTGHQ------RWVWDCAFSADGEY 272 (311)
T ss_pred eecCCceEEEEecCCc---------------------------------eeeEEEeecCC------ceEEeeeeccCccE
Confidence 9999999999999873 02233445555 67888899999999
Q ss_pred EEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEe
Q 015301 328 IYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWH 364 (409)
Q Consensus 328 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s 364 (409)
|++|+.|+.+++|++..++.+....+|.....+++..
T Consensus 273 lvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 273 LVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9999999999999999999999999999888887754
No 24
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.5e-43 Score=295.64 Aligned_cols=282 Identities=21% Similarity=0.369 Sum_probs=231.5
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
+++..-...++|..|++|+++||.|..|..|++|.+... .+.+. +. ..+- ..+=+.+.|-.+.+.|
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~l---k~-------~~~l---~~~d~~sad~~~~~~D 437 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKL---KD-------ASDL---SNIDTESADVDVDMLD 437 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccc---cc-------hhhh---ccccccccchhhhhcc
Confidence 344455567888888888888888888888888887643 21111 11 0110 1111222233333444
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEe
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 193 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~ 193 (409)
..+...... .-+|.++|..+.|+|+.++|++++.|+++++|.+.+...+..+++|..+|.++.|+
T Consensus 438 ~~~~~~~~~---------------L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~ 502 (707)
T KOG0263|consen 438 DDSSGTSRT---------------LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFA 502 (707)
T ss_pred ccCCceeEE---------------eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEec
Confidence 333222111 12678899999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccc
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 273 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 273 (409)
|.|.++|+++.|++.++|.. ....+.+.+.+|.+.|.|+.|+|+..++++|+.|.++++||+.+
T Consensus 503 -P~GyYFatas~D~tArLWs~----d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~----------- 566 (707)
T KOG0263|consen 503 -PRGYYFATASHDQTARLWST----DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST----------- 566 (707)
T ss_pred -CCceEEEecCCCceeeeeec----ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCC-----------
Confidence 89999999999999999995 47888999999999999999999999999999999999999998
Q ss_pred cccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc
Q 015301 274 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF 353 (409)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 353 (409)
+..++.|.||. ..+.+++|||+|++|++|+.||.|.+||+.+++++..+.+
T Consensus 567 -----------------------G~~VRiF~GH~------~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~ 617 (707)
T KOG0263|consen 567 -----------------------GNSVRIFTGHK------GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG 617 (707)
T ss_pred -----------------------CcEEEEecCCC------CceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc
Confidence 67788999988 4566778999999999999999999999999999999999
Q ss_pred CCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 354 HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 354 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
|.+.|.++.|+.||..||++|.|..|++||+.....
T Consensus 618 Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 618 HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred ccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence 999999999999999999999999999999976443
No 25
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.2e-40 Score=275.24 Aligned_cols=287 Identities=28% Similarity=0.439 Sum_probs=243.6
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
.++.+|.++|++++|+|++++|++++.||.+++|++.++..... ...|...+..+.|+|++++|++++.+|.|++|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT---LKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE---EecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence 46779999999999999999999999999999999987753333 334556788999999999999999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEe
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 193 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~ 193 (409)
+.+++...... .|...+.++.|+++++++++++.++.|.+||+.+++....+..|...+.+++|+
T Consensus 80 ~~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 144 (289)
T cd00200 80 LETGECVRTLT---------------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS 144 (289)
T ss_pred cCcccceEEEe---------------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEc
Confidence 98753322111 233469999999998888888879999999999899888888899999999999
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccc
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 273 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 273 (409)
+++.++++++.|+.+++||++ .......+..|...+.++.|+|+++.+++++.|+.+++||++..
T Consensus 145 -~~~~~l~~~~~~~~i~i~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---------- 209 (289)
T cd00200 145 -PDGTFVASSSQDGTIKLWDLR----TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---------- 209 (289)
T ss_pred -CcCCEEEEEcCCCcEEEEEcc----ccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC----------
Confidence 678888888889999999975 56667777788889999999999999999999999999999862
Q ss_pred cccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc
Q 015301 274 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF 353 (409)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 353 (409)
..+..+..+. ..+..+.++|++.++++++.||.|++||+.+++.+..+..
T Consensus 210 ------------------------~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~ 259 (289)
T cd00200 210 ------------------------KCLGTLRGHE------NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG 259 (289)
T ss_pred ------------------------ceecchhhcC------CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc
Confidence 2333333333 2345567888888999888899999999999999999999
Q ss_pred CCcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 354 HNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 354 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
|...|.+++|+|++++|++++.||.|++|+
T Consensus 260 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 260 HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999999999999999999999999996
No 26
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.2e-41 Score=244.33 Aligned_cols=292 Identities=22% Similarity=0.352 Sum_probs=251.2
Q ss_pred eecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCC
Q 015301 28 LPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA 107 (409)
Q Consensus 28 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 107 (409)
.|.+....+.+|.++|.++.|+-||+|.++++.|.+|++|+...+..+.. ..+|...|..++.+.|+..+++|+.|.
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~likt---YsghG~EVlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKT---YSGHGHEVLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred CcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeee---ecCCCceeeeccccccccccccCCCCc
Confidence 35556678899999999999999999999999999999999998866554 445556899999999999999999999
Q ss_pred EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCC--CeeeeEEcCCCC
Q 015301 108 IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA--NKCSLRIPAHKS 185 (409)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~--~~~~~~~~~~~~ 185 (409)
.+.+||+.+++...... +|...|+.++|+.+...+++|+.|.++++||.++ .++++.+.....
T Consensus 82 ~v~vwDV~TGkv~Rr~r---------------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D 146 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFR---------------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD 146 (307)
T ss_pred eEEEEEcccCeeeeecc---------------cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC
Confidence 99999999998755443 5667899999999999999999999999999875 467888888889
Q ss_pred CeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcc
Q 015301 186 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSS 265 (409)
Q Consensus 186 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 265 (409)
.|.++... +..|++|+.||+++.||+| .+.......+ .+|++++|+++++..+.++.|+++++.|-.+
T Consensus 147 ~V~Si~v~---~heIvaGS~DGtvRtydiR----~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~t--- 214 (307)
T KOG0316|consen 147 GVSSIDVA---EHEIVAGSVDGTVRTYDIR----KGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKET--- 214 (307)
T ss_pred ceeEEEec---ccEEEeeccCCcEEEEEee----cceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccch---
Confidence 99999987 6789999999999999988 5555555544 5799999999999999999999999999888
Q ss_pred cccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC
Q 015301 266 NTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 345 (409)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~ 345 (409)
++.+..+++|........+.+. .....+++|++||.|++||+...
T Consensus 215 -------------------------------GklL~sYkGhkn~eykldc~l~----qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 215 -------------------------------GKLLKSYKGHKNMEYKLDCCLN----QSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred -------------------------------hHHHHHhcccccceeeeeeeec----ccceeEEeccCCceEEEEEeccc
Confidence 6788899999887777666544 34789999999999999999999
Q ss_pred ceEEEeccCCcc-eeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 346 AQVAKLDFHNAP-VRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 346 ~~~~~~~~~~~~-v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
..+..+..+... |.+++++|....|+++. ++.+..|.-.
T Consensus 260 ~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~~ 299 (307)
T KOG0316|consen 260 TQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQE 299 (307)
T ss_pred eeeeeeccCCceeEEeeecccCccceeEec-CCceeceeeh
Confidence 999999988887 89999999988777775 4566777543
No 27
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8e-39 Score=258.24 Aligned_cols=380 Identities=19% Similarity=0.245 Sum_probs=266.4
Q ss_pred EEecCc-eeEeeccceE-EEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeeccccc
Q 015301 8 NYSGRG-RFSAADSCHV-LSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALR 85 (409)
Q Consensus 8 ~~s~dg-~~~~~~~~~~-~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 85 (409)
...|.| +++.+.+... +..+-.......+.+|..+++-..|||.|.|+|+|...|+|+|||....+.+.+ .+.....
T Consensus 25 g~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLK-nef~v~a 103 (603)
T KOG0318|consen 25 GGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILK-NEFQVLA 103 (603)
T ss_pred ccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeee-eeeeecc
Confidence 334555 3555544443 444444444568889999999999999999999999999999999876534332 2344455
Q ss_pred ceEEEEEeCCCCcEEEEEecC----CEEEEEEcCCCccccc----------cceec----------------eeeeeeee
Q 015301 86 WTITDTSLSPDQRFLVYASIC----AIVNIVDVGSSARESL----------ANVTE----------------IHKGLDFS 135 (409)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~~d----g~i~~w~~~~~~~~~~----------~~~~~----------------~~~~~~~~ 135 (409)
++|..++|++|++.|++.+.. |.+.+||..+..-... .+... ....+.|.
T Consensus 104 G~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk 183 (603)
T KOG0318|consen 104 GPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFK 183 (603)
T ss_pred cccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeee
Confidence 699999999999999877632 3566777654211100 00000 01123344
Q ss_pred cCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc---CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEe
Q 015301 136 ADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP---AHKSDVNTVCFADETGHLIFSGSDDSLCKVW 212 (409)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 212 (409)
.....|..-|+++.|+|||.++++++.||.+.+||-.+++.+..+. +|.+.|.+++|+ |++..+++++.|.+++||
T Consensus 184 ~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWs-PDs~~~~T~SaDkt~KIW 262 (603)
T KOG0318|consen 184 SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWS-PDSTQFLTVSADKTIKIW 262 (603)
T ss_pred ecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEEC-CCCceEEEecCCceEEEE
Confidence 4455788889999999999999999999999999999999999987 899999999999 899999999999999999
Q ss_pred ccccc---------------------------------------ccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC
Q 015301 213 DRRCF---------------------------------------ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ 253 (409)
Q Consensus 213 d~~~~---------------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 253 (409)
|+... .........+.+|...|+++..+|++++|++++.||
T Consensus 263 dVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG 342 (603)
T KOG0318|consen 263 DVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDG 342 (603)
T ss_pred EeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCc
Confidence 96411 112224455678999999999999999999999999
Q ss_pred cEEEeeCCCCccccccc----cccccc-----------ccccc--cc-------------cccccceeccccCc------
Q 015301 254 TTKLWDIRKMSSNTTDN----SRLRDY-----------DWDYR--WM-------------EYPSYARRLKHPHD------ 297 (409)
Q Consensus 254 ~i~iwd~~~~~~~~~~~----~~~~~~-----------~~~~~--~~-------------~~~~~~~~~~~~~~------ 297 (409)
.|.-|+..++.+..... ..+..+ .|+-. .. ....+...+....+
T Consensus 343 ~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv 422 (603)
T KOG0318|consen 343 HINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVV 422 (603)
T ss_pred eEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEE
Confidence 99999998866543211 111111 11110 00 11111111111111
Q ss_pred ---cceeeeeccccee--eeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce--EEEeccCCcceeeeEEecCcCeE
Q 015301 298 ---QSLATYKGHSVLR--TLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ--VAKLDFHNAPVRDCCWHPIYPML 370 (409)
Q Consensus 298 ---~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l 370 (409)
..+..++.+.... .+.-.....+++|++..+++|+.||.|+||.+..++. ...+..|.++|+++++|||+.+|
T Consensus 423 ~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yl 502 (603)
T KOG0318|consen 423 ACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYL 502 (603)
T ss_pred EecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEE
Confidence 1111112111110 1111233567899999999999999999999987653 33456799999999999999999
Q ss_pred EeecCCCeEEEEecCCCcc
Q 015301 371 ISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 371 ~s~~~dg~i~iw~~~~~~~ 389 (409)
|++...+.+.+||+.+.+.
T Consensus 503 a~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 503 AAGDASRKVVLYDVASREV 521 (603)
T ss_pred EEeccCCcEEEEEcccCce
Confidence 9999999999999988765
No 28
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.8e-40 Score=245.81 Aligned_cols=277 Identities=20% Similarity=0.310 Sum_probs=236.8
Q ss_pred ceeeEEecCceeEeeccc---eEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC---eeeee
Q 015301 4 GREVNYSGRGRFSAADSC---HVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKN---WKIQK 77 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~---~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~---~~~~~ 77 (409)
+-++-|++|.+.+.+.+. .++|+.+.......+.--...|..++|+|.|+++|+|+-|+...||++.+. .....
T Consensus 58 i~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v 137 (343)
T KOG0286|consen 58 IYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRV 137 (343)
T ss_pred eeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccccccccee
Confidence 457889999998777554 467888888877777777899999999999999999999999999999854 22344
Q ss_pred eeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCe
Q 015301 78 DIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQE 156 (409)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 156 (409)
.....+|.+-+.++.|.+ ...|++++.|.+..+||+++++....+. +|.+.|.+++++| +++.
T Consensus 138 ~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~---------------GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 138 SRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFH---------------GHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred eeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEec---------------CCcccEEEEecCCCCCCe
Confidence 456788999999999987 5578899999999999999987644332 6777899999999 9999
Q ss_pred EEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeee--eccccce
Q 015301 157 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL--MGHLEGI 234 (409)
Q Consensus 157 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~v 234 (409)
+++|+-|+..++||++.+..++++.+|.+.|++++|. |++.-|++|+.|++.++||+| ....+..+ .....+|
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ff-P~G~afatGSDD~tcRlyDlR----aD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFF-PSGDAFATGSDDATCRLYDLR----ADQELAVYSHDSIICGI 276 (343)
T ss_pred EEecccccceeeeeccCcceeEeecccccccceEEEc-cCCCeeeecCCCceeEEEeec----CCcEEeeeccCcccCCc
Confidence 9999999999999999999999999999999999999 899999999999999999998 33333333 3345689
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeE
Q 015301 235 TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIR 314 (409)
Q Consensus 235 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (409)
++++|+..|++|++|..|.++.+||.-+ ++.+..+.+|....
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk----------------------------------~e~vg~L~GHeNRv---- 318 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLK----------------------------------GERVGVLAGHENRV---- 318 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccc----------------------------------cceEEEeeccCCee----
Confidence 9999999999999999999999999876 56677788888543
Q ss_pred EEEeeeecCCCCEEEEEeCCCeEEEEE
Q 015301 315 CYFSPEYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 315 ~~~~~~~s~~~~~l~~~~~dg~v~i~d 341 (409)
.++..+|||..|++|+-|..++||.
T Consensus 319 --Scl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 319 --SCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred --EEEEECCCCcEEEecchhHheeecC
Confidence 4457899999999999999999994
No 29
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.4e-39 Score=303.15 Aligned_cols=295 Identities=22% Similarity=0.340 Sum_probs=233.2
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe----eee-eeeecccccceEEEEEeCC-CCcEEEEEecCCE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW----KIQ-KDIETKALRWTITDTSLSP-DQRFLVYASICAI 108 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~----~~~-~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~ 108 (409)
.+.+|.+.|++++|+|+|++||+|+.|++|+||+..... ... ..... .+...+.+++|+| ++.+|++++.||.
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCe
Confidence 345699999999999999999999999999999976421 100 01111 1234789999987 4789999999999
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCe
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV 187 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v 187 (409)
|++||+.+++..... .+|...|++++|+| ++.+|++|+.|+.|++||+.++..+..+..+ ..+
T Consensus 557 v~lWd~~~~~~~~~~---------------~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v 620 (793)
T PLN00181 557 VQVWDVARSQLVTEM---------------KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANI 620 (793)
T ss_pred EEEEECCCCeEEEEe---------------cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCe
Confidence 999999876432211 24566899999997 7889999999999999999999888888754 689
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
.++.|+++++.+|++|+.||.|++||++. .......+.+|...|.++.|. ++.+|++++.|+.|++||++.....
T Consensus 621 ~~v~~~~~~g~~latgs~dg~I~iwD~~~---~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~- 695 (793)
T PLN00181 621 CCVQFPSESGRSLAFGSADHKVYYYDLRN---PKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG- 695 (793)
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCC---CCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc-
Confidence 99999868899999999999999999862 222456677899999999997 6889999999999999998752110
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~ 347 (409)
.....+..+.+|.. .+..+.++|++.+|++|+.|+.|++|+.....+
T Consensus 696 ---------------------------~~~~~l~~~~gh~~------~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~ 742 (793)
T PLN00181 696 ---------------------------INETPLHSFMGHTN------VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMP 742 (793)
T ss_pred ---------------------------cCCcceEEEcCCCC------CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCc
Confidence 01234566667653 233457889999999999999999999876654
Q ss_pred EEEe-------------ccCCcceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 348 VAKL-------------DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 348 ~~~~-------------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
+..+ ..|...|.+++|+|++.+|++|+.||.|++|++
T Consensus 743 ~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 743 VLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred eEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 4322 234567999999999999999999999999986
No 30
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-39 Score=240.50 Aligned_cols=254 Identities=21% Similarity=0.273 Sum_probs=212.2
Q ss_pred eeecccccceEEEEEeCCC-CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCe
Q 015301 78 DIETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQE 156 (409)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (409)
.....+|.+.|+.++..+. ...|++++.|..+.+|++.......-.. .....+|...|..+..+++|++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~----------~r~~~GHsH~v~dv~~s~dg~~ 77 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVP----------VRRLTGHSHFVSDVVLSSDGNF 77 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCce----------eeeeeccceEecceEEccCCce
Confidence 3456778889999999886 5788899999999999998763221111 1112357778999999999999
Q ss_pred EEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc--ccce
Q 015301 157 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH--LEGI 234 (409)
Q Consensus 157 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~v 234 (409)
.++++.|+.+++||+.+++..+.+.+|...|.+++|+ ++...+++|+.|.+|++|+. .+.+..++..+ .+.|
T Consensus 78 alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s-~dn~qivSGSrDkTiklwnt-----~g~ck~t~~~~~~~~WV 151 (315)
T KOG0279|consen 78 ALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFS-TDNRQIVSGSRDKTIKLWNT-----LGVCKYTIHEDSHREWV 151 (315)
T ss_pred EEeccccceEEEEEecCCcEEEEEEecCCceEEEEec-CCCceeecCCCcceeeeeee-----cccEEEEEecCCCcCcE
Confidence 9999999999999999999999999999999999999 89999999999999999996 45555555444 7899
Q ss_pred eEEEEcCC--CCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeee
Q 015301 235 TFIDSRRD--GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTL 312 (409)
Q Consensus 235 ~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (409)
+++.|+|+ ..+|++++.|++|++||+++ .+....+.+|.
T Consensus 152 scvrfsP~~~~p~Ivs~s~DktvKvWnl~~----------------------------------~~l~~~~~gh~----- 192 (315)
T KOG0279|consen 152 SCVRFSPNESNPIIVSASWDKTVKVWNLRN----------------------------------CQLRTTFIGHS----- 192 (315)
T ss_pred EEEEEcCCCCCcEEEEccCCceEEEEccCC----------------------------------cchhhcccccc-----
Confidence 99999998 67999999999999999998 34455666666
Q ss_pred eEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 313 IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 313 ~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
..+..+++||||.+.++|+.||.+.+||++.++.+..+. |...|.+++|+|+.-.|+.+. +..|+|||+++...
T Consensus 193 -~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 193 -GYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAV 266 (315)
T ss_pred -ccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhh
Confidence 344556899999999999999999999999999988886 888999999999876666664 55699999987643
No 31
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.6e-40 Score=273.77 Aligned_cols=298 Identities=21% Similarity=0.333 Sum_probs=253.2
Q ss_pred cCCCceeecCCCCeEEEEE-CCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCE
Q 015301 30 VNGPWKVDGMNSRVYTSQF-SNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAI 108 (409)
Q Consensus 30 ~~~~~~l~~h~~~v~~~~~-s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 108 (409)
......+.|..+.|..+.| .|+.++||+++..+.+++|+..+.... ...+|+..|.++....+|-+|++|+.|.+
T Consensus 313 l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~----ii~GH~e~vlSL~~~~~g~llat~sKD~s 388 (775)
T KOG0319|consen 313 LTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ----IIPGHTEAVLSLDVWSSGDLLATGSKDKS 388 (775)
T ss_pred cEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE----EEeCchhheeeeeecccCcEEEEecCCce
Confidence 3344567799999999998 678899999999999999998876443 45678889999996667789999999999
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEEEecCeEEEEECCCCee-----ee----
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKC-----SL---- 178 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~-----~~---- 178 (409)
+++|.++++...... .....+|...|.+++++..+ ..|++++.|.++++|++...+. ..
T Consensus 389 vilWr~~~~~~~~~~-----------~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~ 457 (775)
T KOG0319|consen 389 VILWRLNNNCSKSLC-----------VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRY 457 (775)
T ss_pred EEEEEecCCcchhhh-----------hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhH
Confidence 999999544332211 11224678889999998754 5789999999999999976221 11
Q ss_pred EEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEe
Q 015301 179 RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLW 258 (409)
Q Consensus 179 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 258 (409)
....|...|++++++ |+..++++|+.|.+.+||++. .......+.+|...|.++.|+|..+.+++++.|++|+||
T Consensus 458 t~~aHdKdIN~Vaia-~ndkLiAT~SqDktaKiW~le----~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW 532 (775)
T KOG0319|consen 458 TERAHDKDINCVAIA-PNDKLIATGSQDKTAKIWDLE----QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIW 532 (775)
T ss_pred HHHhhcccccceEec-CCCceEEecccccceeeeccc----CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEE
Confidence 225799999999999 899999999999999999964 888999999999999999999999999999999999999
Q ss_pred eCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEE
Q 015301 259 DIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVY 338 (409)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~ 338 (409)
.+.+ ..++.++.||. ..+....|-.+|+.|++++.||-++
T Consensus 533 ~is~----------------------------------fSClkT~eGH~------~aVlra~F~~~~~qliS~~adGliK 572 (775)
T KOG0319|consen 533 SIST----------------------------------FSCLKTFEGHT------SAVLRASFIRNGKQLISAGADGLIK 572 (775)
T ss_pred Eecc----------------------------------ceeeeeecCcc------ceeEeeeeeeCCcEEEeccCCCcEE
Confidence 9998 56788999998 4455556777899999999999999
Q ss_pred EEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 339 IYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 339 i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
+|++++++++.++..|...|++++-++...+++||+.||.|.+|.=.+.
T Consensus 573 lWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 573 LWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred EEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 9999999999999999999999999999999999999999999975443
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.8e-40 Score=276.36 Aligned_cols=236 Identities=21% Similarity=0.336 Sum_probs=207.5
Q ss_pred ceeeEEecCceeEeecc---ceEEEEeeecC-------------------------------CCceeecCCCCeEEEEEC
Q 015301 4 GREVNYSGRGRFSAADS---CHVLSRYLPVN-------------------------------GPWKVDGMNSRVYTSQFS 49 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~---~~~~~~~~~~~-------------------------------~~~~l~~h~~~v~~~~~s 49 (409)
-.|..||+|+..+|.+. ...+|.+.|.+ ...++.||.++|+.+.|+
T Consensus 381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFs 460 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFS 460 (707)
T ss_pred ceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeec
Confidence 35889999999877754 34555554311 113588999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceecee
Q 015301 50 NDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIH 129 (409)
Q Consensus 50 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~ 129 (409)
|+.++|+++|.|+++++|.+++...+. ...+|..+|..+.|+|.|-++|+++.|++.++|........+...
T Consensus 461 Pd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa----- 532 (707)
T KOG0263|consen 461 PDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA----- 532 (707)
T ss_pred ccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc-----
Confidence 999999999999999999999875444 355788899999999999999999999999999998765443332
Q ss_pred eeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeE
Q 015301 130 KGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLC 209 (409)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 209 (409)
+|-..|.|+.|+|+..|+++|+.|.+|++||+.+|..++.+.+|.++|++++|+ |+|.+|++|+.||.|
T Consensus 533 ----------ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~S-p~Gr~LaSg~ed~~I 601 (707)
T KOG0263|consen 533 ----------GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFS-PCGRYLASGDEDGLI 601 (707)
T ss_pred ----------ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEc-CCCceEeecccCCcE
Confidence 455679999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred EEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 210 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
.+||+. .+..+..+.+|.+.|.++.|+.+|..|++++.|.+|++||+..
T Consensus 602 ~iWDl~----~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 602 KIWDLA----NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEEEcC----CCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 999964 8899999999999999999999999999999999999999876
No 33
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.2e-40 Score=260.36 Aligned_cols=276 Identities=21% Similarity=0.301 Sum_probs=229.1
Q ss_pred eeeEEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 5 REVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
..|.|.|+||-+.+++.. .+|.-....-...++.|..+|.++.|+++|.++++|+.+|.|++|+..-+ .++.. .
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~~--~ 176 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKII--Q 176 (464)
T ss_pred eeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHHh--h
Confidence 458899999876664432 34444444445678899999999999999999999999999999997654 22221 2
Q ss_pred ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE
Q 015301 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (409)
..|...|++++|+|+...+++++.||+|+|||....+...... +|...|.+++|+|...++++|+
T Consensus 177 ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~---------------GHgwdVksvdWHP~kgLiasgs 241 (464)
T KOG0284|consen 177 AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR---------------GHGWDVKSVDWHPTKGLIASGS 241 (464)
T ss_pred HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec---------------cCCCCcceeccCCccceeEEcc
Confidence 2344689999999999999999999999999998776544432 4566799999999999999999
Q ss_pred ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC
Q 015301 162 SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR 241 (409)
Q Consensus 162 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 241 (409)
.|..|++||.+++.++.++.+|...|..+.|+ +++++|++++.|..++++|+| ..+.+..+++|...++++.|+|
T Consensus 242 kDnlVKlWDprSg~cl~tlh~HKntVl~~~f~-~n~N~Llt~skD~~~kv~DiR----~mkEl~~~r~Hkkdv~~~~WhP 316 (464)
T KOG0284|consen 242 KDNLVKLWDPRSGSCLATLHGHKNTVLAVKFN-PNGNWLLTGSKDQSCKVFDIR----TMKELFTYRGHKKDVTSLTWHP 316 (464)
T ss_pred CCceeEeecCCCcchhhhhhhccceEEEEEEc-CCCCeeEEccCCceEEEEehh----HhHHHHHhhcchhhheeecccc
Confidence 99999999999999999999999999999999 888999999999999999987 6778888999999999999999
Q ss_pred -CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeee
Q 015301 242 -DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 320 (409)
Q Consensus 242 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (409)
...+|.+|+.||.|..|.+...+... ..-.+|. ..+|+++
T Consensus 317 ~~~~lftsgg~Dgsvvh~~v~~~~p~~---------------------------------~i~~AHd------~~iwsl~ 357 (464)
T KOG0284|consen 317 LNESLFTSGGSDGSVVHWVVGLEEPLG---------------------------------EIPPAHD------GEIWSLA 357 (464)
T ss_pred ccccceeeccCCCceEEEecccccccc---------------------------------CCCcccc------cceeeee
Confidence 45688899999999999987321111 1112233 6789999
Q ss_pred ecCCCCEEEEEeCCCeEEEEEc
Q 015301 321 YSTAQKYIYTGSSDNSVYIYDL 342 (409)
Q Consensus 321 ~s~~~~~l~~~~~dg~v~i~d~ 342 (409)
|.|-|.+|++|+.|.++++|.-
T Consensus 358 ~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 358 YHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred ccccceeEeecCCCcceeeecc
Confidence 9999999999999999999975
No 34
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.2e-38 Score=244.42 Aligned_cols=307 Identities=14% Similarity=0.169 Sum_probs=245.7
Q ss_pred cCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEE
Q 015301 30 VNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIV 109 (409)
Q Consensus 30 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 109 (409)
......+..|+..|.+++.+|+.+++|||+.|..-.+|++.++... ....+|+..|+++.|+.+|.+||+|..+|.|
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~---~eltgHKDSVt~~~FshdgtlLATGdmsG~v 130 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA---GELTGHKDSVTCCSFSHDGTLLATGDMSGKV 130 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce---eEecCCCCceEEEEEccCceEEEecCCCccE
Confidence 3455688999999999999999999999999999999999998633 3466778899999999999999999999999
Q ss_pred EEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEE
Q 015301 110 NIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNT 189 (409)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~ 189 (409)
+||+..++........ .-..+.-+.|+|.+..|++|+.||.+.+|.+.++...+.+.+|..++++
T Consensus 131 ~v~~~stg~~~~~~~~---------------e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~ 195 (399)
T KOG0296|consen 131 LVFKVSTGGEQWKLDQ---------------EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTC 195 (399)
T ss_pred EEEEcccCceEEEeec---------------ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccc
Confidence 9999998875443320 1124888999999999999999999999999998888899999999999
Q ss_pred EEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc-ccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccc
Q 015301 190 VCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH-LEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTT 268 (409)
Q Consensus 190 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 268 (409)
=.|. |+|+.++++..||+|++|++. ++.++..+... .....++.++..+..++.|..++.+++-+..+++....
T Consensus 196 G~f~-pdGKr~~tgy~dgti~~Wn~k----tg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~ 270 (399)
T KOG0296|consen 196 GEFI-PDGKRILTGYDDGTIIVWNPK----TGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNC 270 (399)
T ss_pred cccc-CCCceEEEEecCceEEEEecC----CCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEe
Confidence 9999 789999999999999999975 66666665532 34567888888899999999999998888766432221
Q ss_pred ccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceE
Q 015301 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV 348 (409)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~ 348 (409)
... ........+. ....++-+..+|..=.+.|+|+-||+|.|||+...++.
T Consensus 271 ~n~--------------------------~~~~l~~~~e---~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R 321 (399)
T KOG0296|consen 271 NNG--------------------------TVPELKPSQE---ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR 321 (399)
T ss_pred cCC--------------------------CCccccccch---hhhhhhhhcccccccchhhcccccceEEEEecccchhh
Confidence 110 0000001111 11122223344555678999999999999999988887
Q ss_pred EEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 349 AKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 349 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
..+. |..+|+.+.|-+ ..+|++++.||.|+.||.+++...
T Consensus 322 ~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~ 361 (399)
T KOG0296|consen 322 HICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK 361 (399)
T ss_pred eecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceE
Confidence 7776 888999999998 689999999999999999988654
No 35
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-38 Score=234.59 Aligned_cols=290 Identities=19% Similarity=0.305 Sum_probs=238.9
Q ss_pred CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEE
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w 112 (409)
+..|+||..+++.+.|+.+|.+|.+++.|.++.||-..+++.+.. ..+|.+.|.++..+.+.+.+++|+.|.++++|
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGt---y~GHtGavW~~Did~~s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGT---YDGHTGAVWCCDIDWDSKHLITGSADQTAKLW 79 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeee---ecCCCceEEEEEecCCcceeeeccccceeEEE
Confidence 467899999999999999999999999999999999888866654 67788899999999999999999999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-----cCeEEEEECC-------CCeeeeEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-----DNFIYVYDLQ-------ANKCSLRI 180 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~v~d~~-------~~~~~~~~ 180 (409)
|++++++........ +|..+.|+++|++++.... .+.|.++|++ +.++...+
T Consensus 80 Dv~tGk~la~~k~~~----------------~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI 143 (327)
T KOG0643|consen 80 DVETGKQLATWKTNS----------------PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI 143 (327)
T ss_pred EcCCCcEEEEeecCC----------------eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe
Confidence 999998765554433 6999999999998887654 4689999997 55677888
Q ss_pred cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeC
Q 015301 181 PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 260 (409)
Q Consensus 181 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 260 (409)
+.+.+.++.+-|. +-+++|++|..||.|.+||++ .....+.....|...|+.+.+++|..++++++.|.+-++||+
T Consensus 144 ~t~~skit~a~Wg-~l~~~ii~Ghe~G~is~~da~---~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 144 PTPDSKITSALWG-PLGETIIAGHEDGSISIYDAR---TGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDV 219 (327)
T ss_pred cCCccceeeeeec-ccCCEEEEecCCCcEEEEEcc---cCceeeechhhhccccccccccCCcceEEecccCccceeeec
Confidence 8899999999999 889999999999999999986 123556666789999999999999999999999999999999
Q ss_pred CCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCe----
Q 015301 261 RKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNS---- 336 (409)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~---- 336 (409)
++.+ .++++... ..+.+.+++|....++.|+....
T Consensus 220 ~tl~----------------------------------v~Kty~te-------~PvN~aaisP~~d~VilgGGqeA~dVT 258 (327)
T KOG0643|consen 220 RTLE----------------------------------VLKTYTTE-------RPVNTAAISPLLDHVILGGGQEAMDVT 258 (327)
T ss_pred ccee----------------------------------eEEEeeec-------ccccceecccccceEEecCCceeeeee
Confidence 8843 23333332 23344467776777776654322
Q ss_pred ----------EEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 337 ----------VYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 337 ----------v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
.++|++-..+.+..+++|-++|++++|+|+|+..++|++||.|++.-++.
T Consensus 259 TT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 259 TTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred eecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 23333333455778899999999999999999999999999999987654
No 36
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=5e-39 Score=235.68 Aligned_cols=293 Identities=22% Similarity=0.321 Sum_probs=245.2
Q ss_pred CCCceeecCCCCeEEEEECC---CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCC
Q 015301 31 NGPWKVDGMNSRVYTSQFSN---DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA 107 (409)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~---~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 107 (409)
+.+.+..||+.+|..++||| +|-+|++++.|+.-.+-+-+++.-+.. ..+|.+.|.+...+.+...-|+++.|=
T Consensus 5 ~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigt---feghkgavw~~~l~~na~~aasaaadf 81 (334)
T KOG0278|consen 5 QTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGT---FEGHKGAVWSATLNKNATRAASAAADF 81 (334)
T ss_pred cCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEe---eeccCcceeeeecCchhhhhhhhcccc
Confidence 45678889999999999975 899999999999999888888754444 566778999999998888889999999
Q ss_pred EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCe-eeeEEcCCCCC
Q 015301 108 IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK-CSLRIPAHKSD 186 (409)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~ 186 (409)
+-++||.-++....... |..-|.+++|+.|.++|++|+.+..++|+|++..+ +...+.+|.+.
T Consensus 82 takvw~a~tgdelhsf~----------------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~ 145 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSFE----------------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG 145 (334)
T ss_pred hhhhhhhhhhhhhhhhh----------------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCc
Confidence 99999998887644433 33359999999999999999999999999998754 45678899999
Q ss_pred eEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccc
Q 015301 187 VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSN 266 (409)
Q Consensus 187 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 266 (409)
|..+.|+ ...+.|++.+.|++|++||.| ++..++.+. .+.+|+++.++++|++|.++ ..+.|.+||..+..
T Consensus 146 Ir~v~wc-~eD~~iLSSadd~tVRLWD~r----Tgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~-- 216 (334)
T KOG0278|consen 146 IRTVLWC-HEDKCILSSADDKTVRLWDHR----TGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFG-- 216 (334)
T ss_pred ceeEEEe-ccCceEEeeccCCceEEEEec----cCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEecccccc--
Confidence 9999999 777888888999999999987 777777765 46789999999999866554 55679999988732
Q ss_pred ccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 267 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
.++.++.. ..+.+..++|+...+++|++|+.++.||..+++
T Consensus 217 --------------------------------~lKs~k~P-------~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge 257 (334)
T KOG0278|consen 217 --------------------------------LLKSYKMP-------CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE 257 (334)
T ss_pred --------------------------------ceeeccCc-------cccccccccCCCceEEecCcceEEEEEeccCCc
Confidence 23333222 223455688899999999999999999999999
Q ss_pred eEEEe-ccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 347 QVAKL-DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 347 ~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
.+..+ ++|.++|.++.|+|||...++||.||+|++|.....+..
T Consensus 258 Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 258 EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 99886 899999999999999999999999999999998765543
No 37
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-38 Score=258.62 Aligned_cols=286 Identities=18% Similarity=0.243 Sum_probs=247.1
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
.++..|+..|.++.|+|...+++++-.+|.|.|||.++...+....... -+|.+..|-+..+.+++|+.|..|++|+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~---~PvRa~kfiaRknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSE---VPVRAAKFIARKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecc---cchhhheeeeccceEEEecCCceEEEEe
Confidence 4566799999999999999999999999999999999986655543333 3899999999999999999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC-eeeeEEcCCCCCeEEEEE
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~ 192 (409)
..+.+....+. .|..-|.+++.+|...++++++.|-.|++||.+.+ .+.+++.+|...|.+++|
T Consensus 84 ynt~ekV~~Fe---------------AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~f 148 (794)
T KOG0276|consen 84 YNTGEKVKTFE---------------AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAF 148 (794)
T ss_pred cccceeeEEee---------------ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEe
Confidence 99887543332 34557999999999999999999999999999765 567889999999999999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC--CeEEEEeCCCcEEEeeCCCCccccccc
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG--RYFISNGKDQTTKLWDIRKMSSNTTDN 270 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~ 270 (409)
+|.+.+.+++++-|++|++|.+ .+..+..++.+|...|+++.+-+.| .+|++|+.|..+++||..+
T Consensus 149 nPkD~ntFaS~sLDrTVKVWsl----gs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt-------- 216 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSL----GSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT-------- 216 (794)
T ss_pred cCCCccceeeeeccccEEEEEc----CCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch--------
Confidence 9999999999999999999996 4778889999999999999998754 5999999999999999998
Q ss_pred ccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEE
Q 015301 271 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK 350 (409)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 350 (409)
..++++++||..... ...|.|.=.++++|++||+|+||+..+-+...+
T Consensus 217 --------------------------k~CV~TLeGHt~Nvs------~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~t 264 (794)
T KOG0276|consen 217 --------------------------KSCVQTLEGHTNNVS------FVFFHPELPIIISGSEDGTVRIWNSKTYKLEKT 264 (794)
T ss_pred --------------------------HHHHHHhhcccccce------EEEecCCCcEEEEecCCccEEEecCcceehhhh
Confidence 567888888884333 335777778999999999999999999888888
Q ss_pred eccCCcceeeeEEecCcCeEEeecCCCeEEE
Q 015301 351 LDFHNAPVRDCCWHPIYPMLISSSWDCNIVR 381 (409)
Q Consensus 351 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 381 (409)
+.-.-+.|++++-.+.+..++.|...|.|.+
T Consensus 265 Ln~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 265 LNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred hhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 8877889999998888888888877776643
No 38
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.5e-37 Score=257.08 Aligned_cols=346 Identities=18% Similarity=0.176 Sum_probs=270.6
Q ss_pred eeeEEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 5 REVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
.|++-++|...+|.+-.+ .++.........++.||..+|+++.|+..|..||+||.|+.|.+||+-...... .+
T Consensus 69 t~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~---rL 145 (888)
T KOG0306|consen 69 TCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF---RL 145 (888)
T ss_pred EEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeE---Ee
Confidence 467777888777764444 344444445677999999999999999999999999999999999997654443 46
Q ss_pred ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceece-----------------ee-----eeeeecCCC
Q 015301 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEI-----------------HK-----GLDFSADGD 139 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~-----------------~~-----~~~~~~~~~ 139 (409)
.+|...|+.+-|..+.++|++.+.|+.|++||+.+..+......... .. .+.+..+..
T Consensus 146 ~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~ 225 (888)
T KOG0306|consen 146 RGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEK 225 (888)
T ss_pred ecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccc
Confidence 77888999999998889999999999999999987553211100000 00 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 015301 140 -------------------------------------------------------------------------------- 139 (409)
Q Consensus 140 -------------------------------------------------------------------------------- 139 (409)
T Consensus 226 ~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~ 305 (888)
T KOG0306|consen 226 ETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEK 305 (888)
T ss_pred cccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhh
Confidence
Q ss_pred -----------------------------------------------------------------CcceeeEEEEEcCCC
Q 015301 140 -----------------------------------------------------------------EDEFGIFSVKFSTDG 154 (409)
Q Consensus 140 -----------------------------------------------------------------~~~~~v~~~~~~~~~ 154 (409)
+|...|.+++++.+.
T Consensus 306 sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~ 385 (888)
T KOG0306|consen 306 SLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS 385 (888)
T ss_pred hHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc
Confidence 677889999999888
Q ss_pred CeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccce
Q 015301 155 QELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGI 234 (409)
Q Consensus 155 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v 234 (409)
..+++|+ .+.+.+|+..+.++++++.. ..+.+..|. |.++++++|...|.+.+||+. ....+...++|.+.|
T Consensus 386 ~~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fv-pgd~~Iv~G~k~Gel~vfdla----S~~l~Eti~AHdgaI 457 (888)
T KOG0306|consen 386 ILLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFV-PGDRYIVLGTKNGELQVFDLA----SASLVETIRAHDGAI 457 (888)
T ss_pred eeeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEec-CCCceEEEeccCCceEEEEee----hhhhhhhhhccccce
Confidence 7777665 57899999999999999975 388999999 889999999999999999964 777888888999999
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeE
Q 015301 235 TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIR 314 (409)
Q Consensus 235 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (409)
.+++.+||++.+++++.|.+|++||+.-....... ...+..+ .|........
T Consensus 458 Wsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt---------------------------~~k~lsl-~~~rtLel~d 509 (888)
T KOG0306|consen 458 WSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGT---------------------------QKKVLSL-KHTRTLELED 509 (888)
T ss_pred eeeeecCCCCceEEecCCcEEEEEeEEEEeccCcc---------------------------cceeeee-ccceEEeccc
Confidence 99999999999999999999999998652210000 0011111 1122223334
Q ss_pred EEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 315 CYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 315 ~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
-+.++.+||||++||++-.|.+|+||-+.+.+....+.||.-||.+|..|||+++++|||.|.+|++|-++-+.-
T Consensus 510 dvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC 584 (888)
T KOG0306|consen 510 DVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC 584 (888)
T ss_pred cEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh
Confidence 566778999999999999999999999999999999999999999999999999999999999999999876654
No 39
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.8e-39 Score=244.15 Aligned_cols=287 Identities=22% Similarity=0.322 Sum_probs=242.3
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee------cccccceEEEEEeCCCCcEEEEEecCCEEEE
Q 015301 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE------TKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~ 111 (409)
|..+.+-|..|||||++|++|+.||-|.+||..+++ +.+.+. .--++.+|.|+.|+.|...||+|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GK-lrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGK-LRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccch-hhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 566778999999999999999999999999998873 222222 2235568999999999999999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC 191 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 191 (409)
|.+.++.+...+.. .|..+|+++.|+.|+..+++++.|.++++.-+++|+++..+++|.+.|+...
T Consensus 290 Wri~tG~ClRrFdr--------------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ 355 (508)
T KOG0275|consen 290 WRIETGQCLRRFDR--------------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEAT 355 (508)
T ss_pred EEEecchHHHHhhh--------------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceE
Confidence 99999987554331 3555899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc--ccceeEEEEcC-CCCeEEEEeCCCcEEEeeCCCCccccc
Q 015301 192 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH--LEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTT 268 (409)
Q Consensus 192 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~ 268 (409)
|. ++|+.+++++.||+|++|+.+ +..++.+++.. .-+|.++..-| +...++++...+++.+.++..
T Consensus 356 ft-~dG~~iisaSsDgtvkvW~~K----tteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG------ 424 (508)
T KOG0275|consen 356 FT-DDGHHIISASSDGTVKVWHGK----TTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG------ 424 (508)
T ss_pred Ec-CCCCeEEEecCCccEEEecCc----chhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc------
Confidence 99 999999999999999999954 67777666543 34677777666 456889999999999999864
Q ss_pred ccccccccccccccccccccceeccccCccceeeeeccc-ceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce
Q 015301 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHS-VLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~ 347 (409)
+.+..+.... .... ..+...||.|.++.+.++|+.++.|.+.+|+.
T Consensus 425 -----------------------------QvVrsfsSGkREgGd----Fi~~~lSpkGewiYcigED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 425 -----------------------------QVVRSFSSGKREGGD----FINAILSPKGEWIYCIGEDGVLYCFSVLSGKL 471 (508)
T ss_pred -----------------------------eEEeeeccCCccCCc----eEEEEecCCCcEEEEEccCcEEEEEEeecCce
Confidence 4455554332 2222 22345788899999999999999999999999
Q ss_pred EEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 348 VAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 348 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
..++..|...|..++-+|..+.|++-+.||.+++|.
T Consensus 472 E~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 472 ERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999999999999999995
No 40
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=9.3e-38 Score=236.22 Aligned_cols=299 Identities=22% Similarity=0.335 Sum_probs=236.9
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC---------------eeeeeeeecccccceEEEEEeCCCCc
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKN---------------WKIQKDIETKALRWTITDTSLSPDQR 98 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~---------------~~~~~~~~~~~~~~~v~~~~~s~~~~ 98 (409)
..+..|++++.+-+|||||.++|||+.|..|+|.|++.. .....+..+..|...|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 467899999999999999999999999999999998721 11122334556788999999999999
Q ss_pred EEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeee
Q 015301 99 FLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSL 178 (409)
Q Consensus 99 ~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 178 (409)
.|++++.|++|++||+.........+.... ..+|.++.|+|.|.+|++|.....+++||+++-++..
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd-------------~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfv 252 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQD-------------TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFV 252 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhc-------------cceeeeEeecCCCceEEEecCCCceeEEeccceeEee
Confidence 999999999999999987665444433221 2269999999999999999999999999999987755
Q ss_pred EE---cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee-ccc-cceeEEEEcCCCCeEEEEeCCC
Q 015301 179 RI---PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-GHL-EGITFIDSRRDGRYFISNGKDQ 253 (409)
Q Consensus 179 ~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~l~~~~~dg 253 (409)
.- ..|.+.|+++.++ +.+++.++++.||.|++|| ....+++..+. .|. ..|.+..|..+++++++.+.|.
T Consensus 253 sanPd~qht~ai~~V~Ys-~t~~lYvTaSkDG~IklwD----GVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS 327 (430)
T KOG0640|consen 253 SANPDDQHTGAITQVRYS-STGSLYVTASKDGAIKLWD----GVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS 327 (430)
T ss_pred ecCcccccccceeEEEec-CCccEEEEeccCCcEEeec----cccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc
Confidence 43 4699999999999 8999999999999999999 55777777664 344 4688899999999999999999
Q ss_pred cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC
Q 015301 254 TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS 333 (409)
Q Consensus 254 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 333 (409)
.+++|.+.+ ++.+..+.+....... .......|.....+++.-.+
T Consensus 328 ~vkLWEi~t----------------------------------~R~l~~YtGAg~tgrq-~~rtqAvFNhtEdyVl~pDE 372 (430)
T KOG0640|consen 328 TVKLWEIST----------------------------------GRMLKEYTGAGTTGRQ-KHRTQAVFNHTEDYVLFPDE 372 (430)
T ss_pred eeeeeeecC----------------------------------CceEEEEecCCcccch-hhhhhhhhcCccceEEcccc
Confidence 999999988 4445555443211100 01111224444566665544
Q ss_pred -CCeEEEEEccCCceEEEe-ccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 334 -DNSVYIYDLVSGAQVAKL-DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 334 -dg~v~i~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
.+.+.-||.++...+..+ -+|++.+..+.-||.+..+++|+.|-.+++|--.
T Consensus 373 as~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 373 ASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 478999999998766555 3799999999999999999999999999999643
No 41
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.3e-38 Score=244.60 Aligned_cols=274 Identities=24% Similarity=0.333 Sum_probs=228.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~ 118 (409)
....|+|+++. ...+++|..|++|+|||..+-+... .+.+|.+.|.|+.|. .+.|++|+.|.+|++||+++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc
Confidence 45679999996 3569999999999999988764444 356788899999985 5699999999999999999998
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCee---eeEEcCCCCCeEEEEEeCC
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC---SLRIPAHKSDVNTVCFADE 195 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~v~~~~~~~~ 195 (409)
.....- .|...|..+.|+ ..++++++.|.++.+||+.+... ...+.+|...|+.+.|+
T Consensus 269 ~l~tli---------------hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd-- 329 (499)
T KOG0281|consen 269 PLNTLI---------------HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-- 329 (499)
T ss_pred hhhHHh---------------hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--
Confidence 754432 345579999995 45899999999999999987653 34568999999999997
Q ss_pred CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccc
Q 015301 196 TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 275 (409)
Q Consensus 196 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 275 (409)
.+++++++.|.+|++|++ .+...+..+.+|...|.|+.+. ++++++|+.|.+|++||+..
T Consensus 330 -~kyIVsASgDRTikvW~~----st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~------------- 389 (499)
T KOG0281|consen 330 -DKYIVSASGDRTIKVWST----STCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC------------- 389 (499)
T ss_pred -cceEEEecCCceEEEEec----cceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccc-------------
Confidence 459999999999999995 4899999999999999999885 89999999999999999998
Q ss_pred cccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc---------
Q 015301 276 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA--------- 346 (409)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~--------- 346 (409)
+.++..++||......+ .| |.+.+++|..||+|++||+..+.
T Consensus 390 ---------------------G~cLRvLeGHEeLvRci------RF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~ 440 (499)
T KOG0281|consen 390 ---------------------GACLRVLEGHEELVRCI------RF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTL 440 (499)
T ss_pred ---------------------cHHHHHHhchHHhhhhe------ee--cCceeeeccccceEEEEecccccCCcccccch
Confidence 67888999998654443 33 56889999999999999998764
Q ss_pred eEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 347 QVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 347 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
++.++..|.+.|..+.| |...+++++.|.+|.+||+.++..
T Consensus 441 Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 441 CLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred HHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 24455679999999999 456899999999999999977654
No 42
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.2e-36 Score=228.93 Aligned_cols=278 Identities=19% Similarity=0.330 Sum_probs=234.8
Q ss_pred ceeeEEecCceeEeeccce---EEEE-eeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 4 GREVNYSGRGRFSAADSCH---VLSR-YLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~---~~~~-~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
+-.+.|+|||.++++++.+ ++|. +-..+...++++|+++|..+.|.+|++.+++++.|.+++.||.++++...+
T Consensus 50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk-- 127 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRK-- 127 (338)
T ss_pred EEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeeh--
Confidence 3568999999999997765 4454 334455679999999999999999999999999999999999999966654
Q ss_pred ecccccceEEEEEeCCCC-cEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE
Q 015301 80 ETKALRWTITDTSLSPDQ-RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 158 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (409)
+..|...|+++.-+.-| .++.+++.|+++++||+++.+....... ..+++++.|..++..+.
T Consensus 128 -~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~----------------kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 128 -HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN----------------KYQLTAVGFKDTSDQVI 190 (338)
T ss_pred -hccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc----------------ceeEEEEEeccccccee
Confidence 66777788888855445 4566788999999999998766544322 22699999999999999
Q ss_pred EEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccc----ce
Q 015301 159 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE----GI 234 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~v 234 (409)
+|+-|+.|++||++.+.....+.+|.++|+.+..+ +++.++.+-+.|.++++||+|.......++..+.+|.. ..
T Consensus 191 sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls-~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 191 SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLS-RYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred eccccCceeeeccccCcceEEeecccCceeeEEec-cCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 99999999999999999999999999999999999 89999999999999999999987777787888877653 34
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeE
Q 015301 235 TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIR 314 (409)
Q Consensus 235 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (409)
..++|+|+++.+.+++.|..+++||... ...+..+.+|. .
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~----------------------------------r~~lyklpGh~------g 309 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTS----------------------------------RRILYKLPGHY------G 309 (338)
T ss_pred ceeeccCCCCccccccccceEEEeeccc----------------------------------ccEEEEcCCcc------e
Confidence 5678999999999999999999999877 45677788887 4
Q ss_pred EEEeeeecCCCCEEEEEeCCCeEEEEE
Q 015301 315 CYFSPEYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 315 ~~~~~~~s~~~~~l~~~~~dg~v~i~d 341 (409)
.+...+|.|...+|.+++.|.+|++=.
T Consensus 310 svn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 310 SVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred eEEEeeecCCCcEEEEeccCceeEeec
Confidence 455668999999999999999998743
No 43
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=7.9e-37 Score=225.47 Aligned_cols=279 Identities=18% Similarity=0.305 Sum_probs=235.4
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC-CCcEEEEEecCCEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIV 112 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w 112 (409)
..+++|...|.+++|+.+|..|++|+.|+++.+|+++.. .........+|.+.|-.++|+| ....+++++.|..|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 567899999999999999999999999999999999987 4445556778888899999988 46789999999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
|+..+++........ .=.-+.|+|+|.++++++.|..|...|.++.+.+...+ ....+..++|
T Consensus 93 d~r~~k~~~~i~~~~----------------eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w 155 (313)
T KOG1407|consen 93 DIRSGKCTARIETKG----------------ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISW 155 (313)
T ss_pred EeccCcEEEEeeccC----------------cceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeee
Confidence 999988654433222 23457899999999999999999999999888776655 4567888999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccc
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 272 (409)
+ .++++++.....|.|.|... ...+++..+..|.....+|.|+|+|++|++|+.|-.+.+||+...-|
T Consensus 156 ~-~~nd~Fflt~GlG~v~ILsy----psLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC------- 223 (313)
T KOG1407|consen 156 N-NSNDLFFLTNGLGCVEILSY----PSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELIC------- 223 (313)
T ss_pred c-CCCCEEEEecCCceEEEEec----cccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhh-------
Confidence 9 77788887777899999985 48889999999999999999999999999999999999999987433
Q ss_pred ccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec
Q 015301 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD 352 (409)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 352 (409)
++.+..+. -.+..+.||-||++||+|++|..|-|=++++|..+..++
T Consensus 224 ---------------------------~R~isRld------wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 224 ---------------------------ERCISRLD------WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP 270 (313)
T ss_pred ---------------------------heeecccc------CceEEEEeccCcceeeccCccceEEeEecccCCeEEEee
Confidence 23333332 223345788999999999999999999999999999998
Q ss_pred cCCcceeeeEEecCcCeEEeecCC
Q 015301 353 FHNAPVRDCCWHPIYPMLISSSWD 376 (409)
Q Consensus 353 ~~~~~v~~~~~s~~~~~l~s~~~d 376 (409)
+.++-..++|+|...+||-++.|
T Consensus 271 -~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 271 -CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred -ccCCceeEEecCCCceeeEEecC
Confidence 78899999999999999887765
No 44
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=2.9e-37 Score=248.76 Aligned_cols=317 Identities=20% Similarity=0.282 Sum_probs=243.5
Q ss_pred EEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe----eeeeeeecccccceEEEEEeCCCCcEE
Q 015301 25 SRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW----KIQKDIETKALRWTITDTSLSPDQRFL 100 (409)
Q Consensus 25 ~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l 100 (409)
...+|......+.+|+..|.++++.|.|..|++|+.|.+|++||+.... ....+.....| .|.++.|++.+..|
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h--~i~sl~ys~Tg~~i 229 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETH--QINSLQYSVTGDQI 229 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCccccc--ccceeeecCCCCeE
Confidence 3456777778999999999999999999999999999999999987542 11222233344 79999999999999
Q ss_pred EEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCee-ee
Q 015301 101 VYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKC-SL 178 (409)
Q Consensus 101 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~-~~ 178 (409)
++.+.....+|+|-...+.....+-..- +.-.....+|...+++.+|+|. ...+++++.||++++||+...+. ++
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e~~KGDQY---I~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVEFSKGDQY---IRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred EEEecCcceeEEccCCceeeeeeccchh---hhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 9999899999999876554322221111 1112234588999999999994 45789999999999999976543 22
Q ss_pred EE-----cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccc--ceeEEEEcCCCCeEEEEeC
Q 015301 179 RI-----PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE--GITFIDSRRDGRYFISNGK 251 (409)
Q Consensus 179 ~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~ 251 (409)
.+ .+..-+++.++|+ +++++||+|+.||.|.+|+.+... .......-..|.. .|+++.|+++|++|++-+.
T Consensus 307 Vik~k~~~g~Rv~~tsC~~n-rdg~~iAagc~DGSIQ~W~~~~~~-v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~ 384 (641)
T KOG0772|consen 307 VIKTKPAGGKRVPVTSCAWN-RDGKLIAAGCLDGSIQIWDKGSRT-VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF 384 (641)
T ss_pred EEeeccCCCcccCceeeecC-CCcchhhhcccCCceeeeecCCcc-cccceEeeeccCCCCceeEEEeccccchhhhccC
Confidence 23 2344578999999 899999999999999999975221 1223344456776 8999999999999999999
Q ss_pred CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEE
Q 015301 252 DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG 331 (409)
Q Consensus 252 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 331 (409)
|+++++||++.... ++..+.+-...... ...+|||+.++|++|
T Consensus 385 D~tLKvWDLrq~kk---------------------------------pL~~~tgL~t~~~~----tdc~FSPd~kli~TG 427 (641)
T KOG0772|consen 385 DDTLKVWDLRQFKK---------------------------------PLNVRTGLPTPFPG----TDCCFSPDDKLILTG 427 (641)
T ss_pred CCceeeeecccccc---------------------------------chhhhcCCCccCCC----CccccCCCceEEEec
Confidence 99999999998542 33333333222222 233688999999998
Q ss_pred eC------CCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 332 SS------DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 332 ~~------dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
+. .|.+.+||..+.+.++.+.-....|..+.|+|.-+.|+.++.||.+++|-=+
T Consensus 428 tS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 428 TSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred ccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECc
Confidence 75 4789999999999999998888899999999999999999999999987433
No 45
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.4e-36 Score=262.04 Aligned_cols=279 Identities=25% Similarity=0.361 Sum_probs=226.1
Q ss_pred ceeeEEecCceeEeeccce---EEEEeeecC--CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 015301 4 GREVNYSGRGRFSAADSCH---VLSRYLPVN--GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD 78 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~---~~~~~~~~~--~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~ 78 (409)
..|+.||+||+++++.... .++...... ....+.+|...|.+++|+|+++++++++.|++|+|||+.......+
T Consensus 162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~- 240 (456)
T KOG0266|consen 162 VTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLK- 240 (456)
T ss_pred eEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEE-
Confidence 4678999999998876544 333332223 4456789999999999999999999999999999999944323222
Q ss_pred eecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE
Q 015301 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 158 (409)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (409)
...+|...|++++|+|+++.+++|+.|++|++||+++++...... +|..+|.+++|++++++|+
T Consensus 241 -~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~---------------~hs~~is~~~f~~d~~~l~ 304 (456)
T KOG0266|consen 241 -TLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK---------------GHSDGISGLAFSPDGNLLV 304 (456)
T ss_pred -EecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee---------------ccCCceEEEEECCCCCEEE
Confidence 345788899999999999999999999999999999866543332 4566899999999999999
Q ss_pred EEEecCeEEEEECCCCe--eeeEEcCCCCC--eEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccce
Q 015301 159 AAGSDNFIYVYDLQANK--CSLRIPAHKSD--VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGI 234 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v 234 (409)
+++.|+.|++||+.++. +...+..+... +++++|+ +++.++++++.|+.+++||++ .........+|...+
T Consensus 305 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fs-p~~~~ll~~~~d~~~~~w~l~----~~~~~~~~~~~~~~~ 379 (456)
T KOG0266|consen 305 SASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFS-PNGKYLLSASLDRTLKLWDLR----SGKSVGTYTGHSNLV 379 (456)
T ss_pred EcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEEC-CCCcEEEEecCCCeEEEEEcc----CCcceeeecccCCcc
Confidence 99999999999999998 55667666555 9999999 999999999999999999975 777788888887753
Q ss_pred ---eEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceee
Q 015301 235 ---TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRT 311 (409)
Q Consensus 235 ---~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (409)
.+...++.+.++++++.|+.|.+||+.+ ...+..+.+|.
T Consensus 380 ~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s----------------------------------~~~~~~l~~h~---- 421 (456)
T KOG0266|consen 380 RCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS----------------------------------GGILQRLEGHS---- 421 (456)
T ss_pred eeEecccccCCCCeEEEEeCCceEEEEeCCc----------------------------------cchhhhhcCCC----
Confidence 3444577899999999999999999987 34556666663
Q ss_pred eeEEEEeeeecCCCCEEEEEe--CCCeEEEEEcc
Q 015301 312 LIRCYFSPEYSTAQKYIYTGS--SDNSVYIYDLV 343 (409)
Q Consensus 312 ~~~~~~~~~~s~~~~~l~~~~--~dg~v~i~d~~ 343 (409)
...+..+.++|..+++++++ .|+.+++|...
T Consensus 422 -~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 422 -KAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred -CCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 13344567888899999998 68999999753
No 46
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.8e-37 Score=222.18 Aligned_cols=248 Identities=21% Similarity=0.301 Sum_probs=215.6
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
....++++|.++.|+-+|+|.++++.|.+|++|+...+....... +|...|..++.+.|...|++
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs---------------ghG~EVlD~~~s~Dnskf~s 76 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS---------------GHGHEVLDAALSSDNSKFAS 76 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec---------------CCCceeeecccccccccccc
Confidence 345677899999999999999999999999999998876543332 56668999999999999999
Q ss_pred EEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEE
Q 015301 160 AGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 239 (409)
Q Consensus 160 ~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (409)
|+.|..+.+||+++|+..+.+.+|.+.|+.++|+ .+...+++|+.|.++++||.| ....++++.+....+.|.++..
T Consensus 77 ~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fN-eesSVv~SgsfD~s~r~wDCR--S~s~ePiQildea~D~V~Si~v 153 (307)
T KOG0316|consen 77 CGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFN-EESSVVASGSFDSSVRLWDCR--SRSFEPIQILDEAKDGVSSIDV 153 (307)
T ss_pred CCCCceEEEEEcccCeeeeecccccceeeEEEec-CcceEEEeccccceeEEEEcc--cCCCCccchhhhhcCceeEEEe
Confidence 9999999999999999999999999999999999 899999999999999999998 5677888889888999999988
Q ss_pred cCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEee
Q 015301 240 RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSP 319 (409)
Q Consensus 240 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (409)
+ +..|++|+.||+++.||++.+ .....+-+++ +.+.
T Consensus 154 ~--~heIvaGS~DGtvRtydiR~G----------------------------------~l~sDy~g~p--------it~v 189 (307)
T KOG0316|consen 154 A--EHEIVAGSVDGTVRTYDIRKG----------------------------------TLSSDYFGHP--------ITSV 189 (307)
T ss_pred c--ccEEEeeccCCcEEEEEeecc----------------------------------eeehhhcCCc--------ceeE
Confidence 6 667999999999999999983 3333333333 4566
Q ss_pred eecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcce--eeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 320 EYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPV--RDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 320 ~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
.|++|++.+++++.|+++++.|-.+|+.+..+++|...- ...+++.....+++|++||.|++||+.+...
T Consensus 190 s~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 190 SFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred EecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecccee
Confidence 899999999999999999999999999999999997654 4456777777999999999999999987654
No 47
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-37 Score=238.46 Aligned_cols=256 Identities=23% Similarity=0.350 Sum_probs=217.3
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (409)
..+|..+|+.+-|+|+-...++++.|++|++||..+++...... +|...+.+++|+..|++++++
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~Lr---------------GHt~sv~di~~~a~Gk~l~tc 168 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLR---------------GHTDSVFDISFDASGKYLATC 168 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhh---------------ccccceeEEEEecCccEEEec
Confidence 44577899999999999999999999999999999998743322 566679999999999999999
Q ss_pred EecCeEEEEECCC-CeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEE
Q 015301 161 GSDNFIYVYDLQA-NKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 239 (409)
Q Consensus 161 ~~d~~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (409)
+.|-.+.+||.++ .+++..+.+|...|.+++|. |.++++++++.|.+|+.|++. ++.++..+.+|...|..+..
T Consensus 169 SsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~-P~gd~ilS~srD~tik~We~~----tg~cv~t~~~h~ewvr~v~v 243 (406)
T KOG0295|consen 169 SSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFL-PLGDHILSCSRDNTIKAWECD----TGYCVKTFPGHSEWVRMVRV 243 (406)
T ss_pred CCccchhheeHHHHHHHHHHhcCcccceeeEEEE-ecCCeeeecccccceeEEecc----cceeEEeccCchHhEEEEEe
Confidence 9999999999987 56677788999999999999 778999999999999999964 89999999999999999999
Q ss_pred cCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEe-
Q 015301 240 RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS- 318 (409)
Q Consensus 240 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 318 (409)
+.||.++++++.|.++++|-+.+.++. ..++.|.....+......
T Consensus 244 ~~DGti~As~s~dqtl~vW~~~t~~~k----------------------------------~~lR~hEh~vEci~wap~~ 289 (406)
T KOG0295|consen 244 NQDGTIIASCSNDQTLRVWVVATKQCK----------------------------------AELREHEHPVECIAWAPES 289 (406)
T ss_pred cCCeeEEEecCCCceEEEEEeccchhh----------------------------------hhhhccccceEEEEecccc
Confidence 999999999999999999999885433 333344332222221110
Q ss_pred --eeec------CCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 319 --PEYS------TAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 319 --~~~s------~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
+..+ ..+.++++++.|++|++||+.++.++.++.+|...|..++|+|.|+||+++.+|+++++||+.+....
T Consensus 290 ~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 290 SYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCM 369 (406)
T ss_pred cCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceee
Confidence 0000 12469999999999999999999999999999999999999999999999999999999999887543
No 48
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-35 Score=249.87 Aligned_cols=287 Identities=21% Similarity=0.285 Sum_probs=245.3
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
..+.||...|.++++|.+...+++|+ .+.+++|+.++.+++...... .+.+..|-|.++++++|...|.+.+||
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~-----y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG-----YILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc-----cEEEEEecCCCceEEEeccCCceEEEE
Confidence 46789999999999999988888876 467999999988776654322 588899999999999999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCC-----Cee--eeEE-----c
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA-----NKC--SLRI-----P 181 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-----~~~--~~~~-----~ 181 (409)
+.+........ .|.+.+++++.+||++.+++|+.|.+|++||..- +.. +..+ -
T Consensus 441 laS~~l~Eti~---------------AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL 505 (888)
T KOG0306|consen 441 LASASLVETIR---------------AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL 505 (888)
T ss_pred eehhhhhhhhh---------------ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE
Confidence 98776433222 4566899999999999999999999999999742 111 1111 1
Q ss_pred CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 182 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 182 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
.-...|.|+.++ |++.+|+++--|.+|++|-+. +.+....+.+|.-||.++..+||++.+++|+.|.+|++|-+.
T Consensus 506 el~ddvL~v~~S-pdgk~LaVsLLdnTVkVyflD----tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 506 ELEDDVLCVSVS-PDGKLLAVSLLDNTVKVYFLD----TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred eccccEEEEEEc-CCCcEEEEEeccCeEEEEEec----ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 245789999999 999999999999999999865 778888899999999999999999999999999999999987
Q ss_pred CCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEE
Q 015301 262 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d 341 (409)
- +.+-+.+-+|. ..+.++.|-|...++++++.|+.|+-||
T Consensus 581 F----------------------------------GDCHKS~fAHd------DSvm~V~F~P~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 581 F----------------------------------GDCHKSFFAHD------DSVMSVQFLPKTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred c----------------------------------chhhhhhhccc------CceeEEEEcccceeEEEecCcceEEeec
Confidence 6 45556666666 3445667888899999999999999999
Q ss_pred ccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 342 LVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 342 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
-...+.+..+.+|...|++++.+|+|.+++++|.|..|++|+-..
T Consensus 621 g~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 621 GEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 999999999999999999999999999999999999999998765
No 49
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.1e-35 Score=230.69 Aligned_cols=290 Identities=17% Similarity=0.238 Sum_probs=233.3
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC---CcEEEEEecCCEEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD---QRFLVYASICAIVNI 111 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~~ 111 (409)
.-.-|.+.|.++... ++++++|+.||.+++||.... .. ....+|.++|.+++|.-. ...+++++.|.++++
T Consensus 100 ~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk-~~---~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~L 173 (423)
T KOG0313|consen 100 QCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK-SI---KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRL 173 (423)
T ss_pred ccccchhhhhhhccc--CceEEEeecCCeeEEEecCCc-eE---EEEecCCcceeeeEEEecCCccceEEEecCCceEEE
Confidence 334589999999888 689999999999999998765 32 235567789998888543 346999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECC-------------------
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ------------------- 172 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~------------------- 172 (409)
|.++.++........ ..+|...|.+++..++|..+++|+.|..|.+|+.+
T Consensus 174 w~~~~~~~~~~~~~~-----------~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~ 242 (423)
T KOG0313|consen 174 WKWNVGENKVKALKV-----------CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK 242 (423)
T ss_pred EEecCchhhhhHHhH-----------hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhh
Confidence 999877643222211 12678899999999999999999999999999932
Q ss_pred ------CCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeE
Q 015301 173 ------ANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYF 246 (409)
Q Consensus 173 ------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 246 (409)
++.++..+.+|..+|.++.|+ + ...+++++.|.+|+.||+. .+.....+.+ ...+.++.++|..++|
T Consensus 243 ~~~~~~~r~P~vtl~GHt~~Vs~V~w~-d-~~v~yS~SwDHTIk~WDle----tg~~~~~~~~-~ksl~~i~~~~~~~Ll 315 (423)
T KOG0313|consen 243 REKEGGTRTPLVTLEGHTEPVSSVVWS-D-ATVIYSVSWDHTIKVWDLE----TGGLKSTLTT-NKSLNCISYSPLSKLL 315 (423)
T ss_pred hhhcccccCceEEecccccceeeEEEc-C-CCceEeecccceEEEEEee----cccceeeeec-CcceeEeeccccccee
Confidence 123455678999999999998 3 7789999999999999974 6666665553 5678999999999999
Q ss_pred EEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC-CC
Q 015301 247 ISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST-AQ 325 (409)
Q Consensus 247 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~ 325 (409)
++|+.|..+++||.+++.. ......+.+|.. .+.++.++| +.
T Consensus 316 ~~gssdr~irl~DPR~~~g-------------------------------s~v~~s~~gH~n------wVssvkwsp~~~ 358 (423)
T KOG0313|consen 316 ASGSSDRHIRLWDPRTGDG-------------------------------SVVSQSLIGHKN------WVSSVKWSPTNE 358 (423)
T ss_pred eecCCCCceeecCCCCCCC-------------------------------ceeEEeeecchh------hhhheecCCCCc
Confidence 9999999999999998432 123466778874 233445555 44
Q ss_pred CEEEEEeCCCeEEEEEccCCc-eEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 326 KYIYTGSSDNSVYIYDLVSGA-QVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 326 ~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
.+|++|+.|+++++||+++.+ ++..+.+|...|.++.|+. +.++++||.|.+|+++.-..
T Consensus 359 ~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 359 FQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred eEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEecccc
Confidence 678899999999999999987 9999999999999999974 66999999999999987543
No 50
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=8.9e-38 Score=244.81 Aligned_cols=302 Identities=21% Similarity=0.287 Sum_probs=246.5
Q ss_pred ceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEE
Q 015301 21 CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFL 100 (409)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 100 (409)
..++..-+|......+..|.+.+..+.|-++...|++|+.|..|++|+..... ......+.+..++|+++.|.++++.+
T Consensus 156 d~~v~~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~~~ 234 (459)
T KOG0288|consen 156 DHFVEDTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNKHV 234 (459)
T ss_pred chhhhcccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCceE
Confidence 45677778888889999999999999999998999999999999999987764 22223344555689999999999999
Q ss_pred EEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE
Q 015301 101 VYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI 180 (409)
Q Consensus 101 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 180 (409)
++++.|+.+++|++...+...... +|...|+++.|......+++|+.|.+|++||+....+..++
T Consensus 235 iAas~d~~~r~Wnvd~~r~~~TLs---------------GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~ 299 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSLRLRHTLS---------------GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV 299 (459)
T ss_pred EeecCCCceeeeeccchhhhhhhc---------------ccccceeeehhhccccceeeccccchhhhhhhhhhheeccc
Confidence 999999999999998876543332 56668999999887777999999999999999998877765
Q ss_pred cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeC
Q 015301 181 PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 260 (409)
Q Consensus 181 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 260 (409)
. ..+.+.+++.. ...+++|..|++|++||.| ...+......+. .|+++..++++..+++++.|.++.+.|+
T Consensus 300 l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~R----s~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDl 370 (459)
T KOG0288|consen 300 L-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIR----SADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDL 370 (459)
T ss_pred c-ccccccceEec---ceeeeecccccceEEEecc----CCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeec
Confidence 4 34556777765 5678899999999999977 666667666654 8999999999999999999999999999
Q ss_pred CCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEE
Q 015301 261 RKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIY 340 (409)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~ 340 (409)
++.+.. ..+..... ....-.....|||++.|+++|+.||.|+||
T Consensus 371 Rt~eI~----------------------------------~~~sA~g~--k~asDwtrvvfSpd~~YvaAGS~dgsv~iW 414 (459)
T KOG0288|consen 371 RTKEIR----------------------------------QTFSAEGF--KCASDWTRVVFSPDGSYVAAGSADGSVYIW 414 (459)
T ss_pred ccccEE----------------------------------EEeecccc--ccccccceeEECCCCceeeeccCCCcEEEE
Confidence 984322 22222110 000113345699999999999999999999
Q ss_pred EccCCceEEEeccCCc--ceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 341 DLVSGAQVAKLDFHNA--PVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 341 d~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
++.++++...+..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 415 ~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 415 SVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999999888876544 599999999999999999999999993
No 51
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-34 Score=220.04 Aligned_cols=297 Identities=17% Similarity=0.278 Sum_probs=236.8
Q ss_pred CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec--CCEEE
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI--CAIVN 110 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~ 110 (409)
...+....+.|+++.|+++|.+|++++.|.+++|||..++.....+... +..+..++|......++.++. |.+|+
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk---kyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK---KYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc---cccccEEEEecCCceEEEccCCCCCceE
Confidence 3455567889999999999999999999999999999999766654433 236888899887777777775 88999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEE
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTV 190 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~ 190 (409)
..++.+.+..+... +|...|.+++.+|-+..+++++.|++|++||++..++...+.... -..+
T Consensus 84 yLsl~dNkylRYF~---------------GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~ 146 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFP---------------GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIA 146 (311)
T ss_pred EEEeecCceEEEcC---------------CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--Ccce
Confidence 99999887654433 677789999999999999999999999999999888777664333 3457
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee-ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccc
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTD 269 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 269 (409)
+|. |.|-++|++.....|++||+|......-....+. +.....+.+.|+|||++|+.+...+.+.+.|.-+
T Consensus 147 AfD-p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~------- 218 (311)
T KOG1446|consen 147 AFD-PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD------- 218 (311)
T ss_pred eEC-CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC-------
Confidence 888 8999999998888999999995533322222222 3456789999999999999999999999999766
Q ss_pred cccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEE
Q 015301 270 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA 349 (409)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~ 349 (409)
+.....+.++....... .+..|+||++++++|+.||+|.+|++++++.+.
T Consensus 219 ---------------------------G~~~~tfs~~~~~~~~~---~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 219 ---------------------------GTVKSTFSGYPNAGNLP---LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA 268 (311)
T ss_pred ---------------------------CcEeeeEeeccCCCCcc---eeEEECCCCcEEEEecCCCcEEEEEcCCCcEee
Confidence 44455666555433222 344689999999999999999999999999999
Q ss_pred Eecc-CCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 350 KLDF-HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 350 ~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
.+++ +.+++.++.|+|...+++|++ ..+.+|=....+.
T Consensus 269 ~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~~~~ 307 (311)
T KOG1446|consen 269 VLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDEDAL 307 (311)
T ss_pred EecCCCCCCccccccCCceeeeeecC--ceEEEEecccccc
Confidence 9998 689999999999877777774 5788897665443
No 52
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-36 Score=221.69 Aligned_cols=283 Identities=21% Similarity=0.333 Sum_probs=222.0
Q ss_pred EEEEECC--CCCEEE-EE-----eCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC-CcEEEEEecCCEEEEEEc
Q 015301 44 YTSQFSN--DGSFFV-AA-----SQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDV 114 (409)
Q Consensus 44 ~~~~~s~--~~~~l~-t~-----~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~~w~~ 114 (409)
+++.||| ++++.+ ++ ...|++.|.++.....+....... -...+..++|+++ .+.+++++.||++++||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 6788998 333322 22 135889999987554554433332 2347999999996 567888899999999995
Q ss_pred CCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEe
Q 015301 115 GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 193 (409)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~ 193 (409)
..... +.... ++|..+|.++.|++ ++..+++++.|++|++|+...++.+.++.+|...|...+|+
T Consensus 91 ~~~s~-Pi~~~-------------kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~s 156 (311)
T KOG0277|consen 91 TMPSK-PIHKF-------------KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFS 156 (311)
T ss_pred CCCCc-chhHH-------------HhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecC
Confidence 43322 11111 25666899999998 56678888999999999999999999999999999999999
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC-CCCeEEEEeCCCcEEEeeCCCCccccccccc
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 272 (409)
|..++++++++.|+++++||+|. .++.+. +..|...+.++.|+. +...+++|+.|+.|+.||+++..
T Consensus 157 p~~~nlfas~Sgd~~l~lwdvr~---~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-------- 224 (311)
T KOG0277|consen 157 PHIPNLFASASGDGTLRLWDVRS---PGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR-------- 224 (311)
T ss_pred CCCCCeEEEccCCceEEEEEecC---CCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--------
Confidence 99999999999999999999982 344444 888999999999987 56688999999999999999854
Q ss_pred ccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCC-CCEEEEEeCCCeEEEEEccCC-ceEEE
Q 015301 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA-QKYIYTGSSDNSVYIYDLVSG-AQVAK 350 (409)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~v~i~d~~~~-~~~~~ 350 (409)
.++..+.+|.. .+..+.+||. ..+||+++.|-+++|||...+ ..+.+
T Consensus 225 -------------------------~pl~eL~gh~~------AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~ 273 (311)
T KOG0277|consen 225 -------------------------TPLFELNGHGL------AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIET 273 (311)
T ss_pred -------------------------ccceeecCCce------EEEEEecCcchhhHhhhccccceEEecccccchhhhhh
Confidence 34566677762 3334456664 468999999999999999854 45677
Q ss_pred eccCCcceeeeEEecCcC-eEEeecCCCeEEEEec
Q 015301 351 LDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEI 384 (409)
Q Consensus 351 ~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~ 384 (409)
...|...|..+.||+-.. ++|+++.|+.++||+.
T Consensus 274 ~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 274 VDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhccceEEeccccccccCceeeecccccceeeecc
Confidence 778999999999998644 9999999999999984
No 53
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-36 Score=233.99 Aligned_cols=247 Identities=21% Similarity=0.277 Sum_probs=219.3
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (409)
..+|.+.|.++++.|.+.++++|+.|++++|||+.+++...... +|...|..+++++-..|++++
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt---------------Ghi~~vr~vavS~rHpYlFs~ 211 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT---------------GHIETVRGVAVSKRHPYLFSA 211 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec---------------chhheeeeeeecccCceEEEe
Confidence 45788899999999999999999999999999999997644332 455579999999999999999
Q ss_pred EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEc
Q 015301 161 GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (409)
+.|+.|+.||++..+.++.+.+|-+.|.|++.+ |.-+.|++|+.|.++++||+| ....+..+.+|..+|.++.+.
T Consensus 212 gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lh-PTldvl~t~grDst~RvWDiR----tr~~V~~l~GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLH-PTLDVLVTGGRDSTIRVWDIR----TRASVHVLSGHTNPVASVMCQ 286 (460)
T ss_pred cCCCeeEEEechhhhhHHHhccccceeEEEecc-ccceeEEecCCcceEEEeeec----ccceEEEecCCCCcceeEEee
Confidence 999999999999999999999999999999999 788899999999999999987 788899999999999999999
Q ss_pred CCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeee
Q 015301 241 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 320 (409)
Q Consensus 241 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (409)
|-...+++|+.|++|++||++. ++...++..|. ..+.+++
T Consensus 287 ~~dpqvit~S~D~tvrlWDl~a----------------------------------gkt~~tlt~hk------ksvral~ 326 (460)
T KOG0285|consen 287 PTDPQVITGSHDSTVRLWDLRA----------------------------------GKTMITLTHHK------KSVRALC 326 (460)
T ss_pred cCCCceEEecCCceEEEeeecc----------------------------------CceeEeeeccc------ceeeEEe
Confidence 9888899999999999999998 55566666666 3334556
Q ss_pred ecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 321 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 321 ~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
..|....+|+++.|. |+-|++..++.+..+.+|..-|++++...|+ ++++|+++|.+.+||..++-.
T Consensus 327 lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 327 LHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred cCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcc
Confidence 778888899988875 8999999999999999999999999998765 788999999999999987643
No 54
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.5e-35 Score=215.64 Aligned_cols=281 Identities=17% Similarity=0.228 Sum_probs=217.9
Q ss_pred eeeEEecC-ceeEeeccceEEEEeeecCC--Ccee-----ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeee
Q 015301 5 REVNYSGR-GRFSAADSCHVLSRYLPVNG--PWKV-----DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQ 76 (409)
Q Consensus 5 ~~~~~s~d-g~~~~~~~~~~~~~~~~~~~--~~~l-----~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~ 76 (409)
=.++|+|- |..+++++.....+.+.... .+.. .+|+..|..++|+|.|++||+||.|.++.||.-..+ ...
T Consensus 18 W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~-efe 96 (312)
T KOG0645|consen 18 WSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG-EFE 96 (312)
T ss_pred EEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCC-cee
Confidence 35889998 88888888776666555553 2222 379999999999999999999999999999997755 444
Q ss_pred eeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCe
Q 015301 77 KDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQE 156 (409)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (409)
......+|...|.+++|+++|++||+++.|..|-+|.+..+...... ....+|...|..+.|+|...+
T Consensus 97 cv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~------------aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 97 CVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECI------------AVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEE------------eeeccccccccEEEEcCCcce
Confidence 45667889999999999999999999999999999999855432222 222356778999999999999
Q ss_pred EEEEEecCeEEEEECC---CCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccc
Q 015301 157 LVAAGSDNFIYVYDLQ---ANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEG 233 (409)
Q Consensus 157 l~~~~~d~~i~v~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 233 (409)
|++++.|.+|++|+-. .-++++++.+|...|.+++|. +.|+.|++++.|++++||... ......|..+
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~-~~G~rl~s~sdD~tv~Iw~~~--------~~~~~~~sr~ 235 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFD-NIGSRLVSCSDDGTVSIWRLY--------TDLSGMHSRA 235 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEec-CCCceEEEecCCcceEeeeec--------cCcchhcccc
Confidence 9999999999999876 346788999999999999999 889999999999999999953 1112347788
Q ss_pred eeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcccee-eeecccceeee
Q 015301 234 ITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA-TYKGHSVLRTL 312 (409)
Q Consensus 234 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 312 (409)
+..+.|. ...|++++.|+.|++|.-......+.. ..+. .-..|.
T Consensus 236 ~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~----------------------------~l~~~~~~aHe----- 280 (312)
T KOG0645|consen 236 LYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSW----------------------------NLLAKKEGAHE----- 280 (312)
T ss_pred eEeeeec--ccceEeccCCCEEEEEEecCCCCCchH----------------------------HHHHhhhcccc-----
Confidence 9999998 457999999999999976531111100 0011 112233
Q ss_pred eEEEEeeeecCC-CCEEEEEeCCCeEEEEEcc
Q 015301 313 IRCYFSPEYSTA-QKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 313 ~~~~~~~~~s~~-~~~l~~~~~dg~v~i~d~~ 343 (409)
.-+.+++|.|. .++|++|+.||.|++|.+.
T Consensus 281 -~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 281 -VDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred -cccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 13345567774 6899999999999999874
No 55
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-35 Score=237.17 Aligned_cols=289 Identities=17% Similarity=0.216 Sum_probs=229.6
Q ss_pred cCCCCeEEEEECCCCCE-EEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCC
Q 015301 38 GMNSRVYTSQFSNDGSF-FVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGS 116 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~-l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~ 116 (409)
...+.|.+++|||...+ +|+.+. -.+.||+..+.........+.. .+.++.|-.||++||+|...|.|++||..+
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~---~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKD---VVYSVDFRSDGRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred cccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhcc---ceeEEEeecCCeEEEccCCcCcEEEecccc
Confidence 34578999999996543 444443 4599999887655444444444 799999999999999999999999999655
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCC
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE 195 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 195 (409)
....... ..|+.++..+.|+|+ +..+++|+.|+.+++||+.+......+.+|++.|.|.+|+|.
T Consensus 100 r~iLR~~---------------~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~ 164 (487)
T KOG0310|consen 100 RVILRQL---------------YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPA 164 (487)
T ss_pred HHHHHHH---------------hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccC
Confidence 3222111 145668999999995 556778888999999999998876688999999999999988
Q ss_pred CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccc
Q 015301 196 TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 275 (409)
Q Consensus 196 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 275 (409)
++.++++|+.||.|++||+|. .. ..+.. ..|..+|..+.+-|.|..+++++.. .+++||+.++.
T Consensus 165 ~~hivvtGsYDg~vrl~DtR~--~~-~~v~e-lnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~----------- 228 (487)
T KOG0310|consen 165 NDHIVVTGSYDGKVRLWDTRS--LT-SRVVE-LNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGG----------- 228 (487)
T ss_pred CCeEEEecCCCceEEEEEecc--CC-ceeEE-ecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCc-----------
Confidence 899999999999999999882 12 33343 4589999999999999999988765 69999998632
Q ss_pred cccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCC
Q 015301 276 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHN 355 (409)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 355 (409)
+.+..+..|. ..++++.+..++..|++|+.|+.|++||+.+.+.+..+. ..
T Consensus 229 ----------------------qll~~~~~H~------KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~ 279 (487)
T KOG0310|consen 229 ----------------------QLLTSMFNHN------KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YP 279 (487)
T ss_pred ----------------------eehhhhhccc------ceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cc
Confidence 3333444354 345566777789999999999999999999999999987 67
Q ss_pred cceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 356 APVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 356 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
++|.+++.+|+++.++.|-.||.+.+=+....+++
T Consensus 280 ~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k~ 314 (487)
T KOG0310|consen 280 GPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKKP 314 (487)
T ss_pred cceeeEEecCCCceEEEecccceeeeehhhcccCC
Confidence 89999999999999999999999888765554443
No 56
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-36 Score=255.90 Aligned_cols=294 Identities=18% Similarity=0.250 Sum_probs=246.8
Q ss_pred eecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcC
Q 015301 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVG 115 (409)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~ 115 (409)
+..-+.+|..++|+|...+++++-..|.|++||..-+..+.+ ...|+++|..++|+|.+.++++|+.|-.|++|+..
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~r---FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDR---FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhh---hhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 445567899999999999999999999999999987755554 55678899999999999999999999999999999
Q ss_pred CCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCC
Q 015301 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE 195 (409)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 195 (409)
+.++..... +|-.-|..+.|++.-.+|++++.|.+|+||+..+++++..+.+|...|.|..|+ |
T Consensus 82 ~rrclftL~---------------GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh-p 145 (1202)
T KOG0292|consen 82 TRRCLFTLL---------------GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH-P 145 (1202)
T ss_pred cceehhhhc---------------cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC-C
Confidence 887643332 455579999999999999999999999999999999999999999999999999 7
Q ss_pred CCcEEEEeeCCCeEEEeccccccc-------------------------CCceeeeeeccccceeEEEEcCCCCeEEEEe
Q 015301 196 TGHLIFSGSDDSLCKVWDRRCFIS-------------------------KGRANGVLMGHLEGITFIDSRRDGRYFISNG 250 (409)
Q Consensus 196 ~~~~l~~~~~dg~i~iwd~~~~~~-------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 250 (409)
..++++++|-|.+|++||+..... .......+.+|...|+-++|+|.-.++++|+
T Consensus 146 tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~ 225 (1202)
T KOG0292|consen 146 TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA 225 (1202)
T ss_pred ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC
Confidence 889999999999999999752100 0112345678999999999999999999999
Q ss_pred CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEE
Q 015301 251 KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT 330 (409)
Q Consensus 251 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 330 (409)
.|..|++|.++..+ .-.+.+.++|... +.++-|+|..+++++
T Consensus 226 DDRqVKlWrmnetK--------------------------------aWEvDtcrgH~nn------Vssvlfhp~q~lIlS 267 (1202)
T KOG0292|consen 226 DDRQVKLWRMNETK--------------------------------AWEVDTCRGHYNN------VSSVLFHPHQDLILS 267 (1202)
T ss_pred CcceeeEEEecccc--------------------------------ceeehhhhcccCC------cceEEecCccceeEe
Confidence 99999999987622 1234556677632 234457888999999
Q ss_pred EeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 331 GSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 331 ~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
.++|++|+|||+...+.+++++...+.-+.++-+|..+++++| .|+-+.++.++..
T Consensus 268 nsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleRE 323 (1202)
T KOG0292|consen 268 NSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLERE 323 (1202)
T ss_pred cCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEccc
Confidence 9999999999999999999998888899999999999877766 5666778877643
No 57
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.9e-37 Score=238.20 Aligned_cols=240 Identities=21% Similarity=0.316 Sum_probs=204.8
Q ss_pred cceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC
Q 015301 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN 164 (409)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 164 (409)
...|.|+.+. ...+++|..|++|++||..+..+..... +|.+.|.|+.| +.+.+++|+.|.
T Consensus 197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~---------------GHtGSVLCLqy--d~rviisGSSDs 257 (499)
T KOG0281|consen 197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILT---------------GHTGSVLCLQY--DERVIVSGSSDS 257 (499)
T ss_pred CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhh---------------cCCCcEEeeec--cceEEEecCCCc
Confidence 3469999884 5679999999999999998776543332 67778999999 566999999999
Q ss_pred eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCC
Q 015301 165 FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR 244 (409)
Q Consensus 165 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 244 (409)
+|++||.++++++.++-+|...|..+.|+ +.++++++.|.++.+||+.... .-.+...+.+|...|+.+.|+ .+
T Consensus 258 TvrvWDv~tge~l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps-~it~rrVLvGHrAaVNvVdfd--~k 331 (499)
T KOG0281|consen 258 TVRVWDVNTGEPLNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDFD--DK 331 (499)
T ss_pred eEEEEeccCCchhhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCch-HHHHHHHHhhhhhheeeeccc--cc
Confidence 99999999999999999999999999998 5689999999999999986332 334556788999999999996 56
Q ss_pred eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCC
Q 015301 245 YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA 324 (409)
Q Consensus 245 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 324 (409)
++++++.|.+|++|++.+ ...+.++.+|.....+ ..+ .
T Consensus 332 yIVsASgDRTikvW~~st----------------------------------~efvRtl~gHkRGIAC------lQY--r 369 (499)
T KOG0281|consen 332 YIVSASGDRTIKVWSTST----------------------------------CEFVRTLNGHKRGIAC------LQY--R 369 (499)
T ss_pred eEEEecCCceEEEEeccc----------------------------------eeeehhhhccccccee------hhc--c
Confidence 999999999999999998 5667788888743332 222 5
Q ss_pred CCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcccCCC
Q 015301 325 QKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAPLP 393 (409)
Q Consensus 325 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 393 (409)
++++++|+.|.+|++||+..|.++..+++|+.-|.++.| |.+.+++|+.||+|++||+.....+..+
T Consensus 370 ~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~ 436 (499)
T KOG0281|consen 370 DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAP 436 (499)
T ss_pred CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCccc
Confidence 899999999999999999999999999999999999999 4578999999999999999988776544
No 58
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=9.6e-36 Score=249.46 Aligned_cols=239 Identities=27% Similarity=0.310 Sum_probs=178.4
Q ss_pred cceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCC--CcEEEEeeCCCeEEEecccccc
Q 015301 141 DEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADET--GHLIFSGSDDSLCKVWDRRCFI 218 (409)
Q Consensus 141 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~ 218 (409)
...++.+++.+|+|++|++|..-|.++||++.+-+....+..|...|.|+.|+-|. .++|++++.|..|.+||+.
T Consensus 458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~--- 534 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK--- 534 (1080)
T ss_pred cccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc---
Confidence 44568999999999999999999999999999888888889999999999998432 4689999999999999984
Q ss_pred cCCceeeeeeccccceeEEEEcCCC--CeEEEEeCCCcEEEeeCCCCcccccccc--------ccccccccccc-----c
Q 015301 219 SKGRANGVLMGHLEGITFIDSRRDG--RYFISNGKDQTTKLWDIRKMSSNTTDNS--------RLRDYDWDYRW-----M 283 (409)
Q Consensus 219 ~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~-----~ 283 (409)
.+...+.++.+|...|+++.|.-.| ..+++++.|+.|.+--.++......... ..-++..+..+ .
T Consensus 535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~ 614 (1080)
T KOG1408|consen 535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV 614 (1080)
T ss_pred cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEE
Confidence 4667778888888888888887666 5677777777654433222111111110 00001111000 0
Q ss_pred cccccceeccccCccceeeeecccce-eeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeE
Q 015301 284 EYPSYARRLKHPHDQSLATYKGHSVL-RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCC 362 (409)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~ 362 (409)
......+.+....++..+.|++.... ...+ .+..+|.|.|||+.+.|.++.++|..+++++.++.+|...|+.+.
T Consensus 615 cQDrnirif~i~sgKq~k~FKgs~~~eG~lI----Kv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~k 690 (1080)
T KOG1408|consen 615 CQDRNIRIFDIESGKQVKSFKGSRDHEGDLI----KVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVK 690 (1080)
T ss_pred ecccceEEEeccccceeeeecccccCCCceE----EEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeee
Confidence 11122333444556777777775543 3333 334667799999999999999999999999999999999999999
Q ss_pred EecCcCeEEeecCCCeEEEEecCC
Q 015301 363 WHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 363 ~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
|.+|.+.|++.+.||+|.+|.++.
T Consensus 691 F~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 691 FLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ecccchhheeecCCceEEEEECch
Confidence 999999999999999999999875
No 59
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-36 Score=256.62 Aligned_cols=309 Identities=14% Similarity=0.170 Sum_probs=206.8
Q ss_pred eee-cCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEe--CCCCcEEEEEecCCEEEE
Q 015301 35 KVD-GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSL--SPDQRFLVYASICAIVNI 111 (409)
Q Consensus 35 ~l~-~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i~~ 111 (409)
.+. .|.+.|+++.||+||+|||+||.|+.|+||.+...+.... +...-.++.+ ...+....+....+.+.=
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~------~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRV------AEGDSSCMYFEYNANSQIEPSTSSEEKISS 334 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcc------cccccchhhhhhhhccccCccccccccccc
Confidence 455 8999999999999999999999999999999876422111 0001111111 111111111111100000
Q ss_pred EEcCCCccccccceeceeeeeeeec----CCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCe
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSA----DGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV 187 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v 187 (409)
-.....+........-......|.. ...+|...|.++.|+.++ +|++++.|.+|++|++...+++..+. |...|
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfV 412 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFV 412 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCee
Confidence 0000000000000000000011111 123788999999999766 78999999999999999999999887 99999
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
+|++|+|-|.++|++|+-||.|+||++ ....+.....-..-|++++|.|||+..+.|+.+|.+++|++.......
T Consensus 413 TcVaFnPvDDryFiSGSLD~KvRiWsI-----~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~ 487 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLDGKVRLWSI-----SDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVS 487 (712)
T ss_pred EEEEecccCCCcEeecccccceEEeec-----CcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEE
Confidence 999999999999999999999999997 344445555556889999999999999999999999999998743322
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC-CCCEEEEEeCCCeEEEEEccCCc
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
... +..-.+.. ....-++...|.| +...|++.+.|..|+|||.++.+
T Consensus 488 ~~~-----------------------------I~~~~~Kk---~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~ 535 (712)
T KOG0283|consen 488 DFH-----------------------------IRLHNKKK---KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD 535 (712)
T ss_pred eee-----------------------------EeeccCcc---ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh
Confidence 111 10000000 0001123333443 23357788899999999999999
Q ss_pred eEEEeccCCc--ceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 347 QVAKLDFHNA--PVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 347 ~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
++..++++.. .-....|+.||++|+++++|..|++|+.....
T Consensus 536 lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 536 LVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred hhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 9999987643 33556899999999999999999999986544
No 60
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.6e-36 Score=233.89 Aligned_cols=275 Identities=16% Similarity=0.246 Sum_probs=221.3
Q ss_pred eEEecCceeEeeccce---EEEEeeecCC---CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 7 VNYSGRGRFSAADSCH---VLSRYLPVNG---PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 7 ~~~s~dg~~~~~~~~~---~~~~~~~~~~---~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
+.||++|+|+|+++.+ .+|...+... ..++.||..+|.-+.||||.++|++++.|..+.+||+.++........
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~ 309 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS 309 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc
Confidence 7899999999997755 4455555544 568899999999999999999999999999999999999965543322
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (409)
++...+.+++|.|||..+++|+.|+.+..||++......-..... ..|.+++..+||+++++.
T Consensus 310 --~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~---------------~~v~dlait~Dgk~vl~v 372 (519)
T KOG0293|consen 310 --GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRD---------------PKVHDLAITYDGKYVLLV 372 (519)
T ss_pred --CcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccccc---------------ceeEEEEEcCCCcEEEEE
Confidence 245689999999999999999999999999998765332222111 159999999999999999
Q ss_pred EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeE--EE
Q 015301 161 GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF--ID 238 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~--~~ 238 (409)
+.|..|++++.++......+. ...+|++++.+ .+++++++--.+..+++||+. ....+..+.+|...-.- -+
T Consensus 373 ~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS-~d~k~~LvnL~~qei~LWDl~----e~~lv~kY~Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 373 TVDKKIRLYNREARVDRGLIS-EEQPITSFSIS-KDGKLALVNLQDQEIHLWDLE----ENKLVRKYFGHKQGHFIIRSC 446 (519)
T ss_pred ecccceeeechhhhhhhcccc-ccCceeEEEEc-CCCcEEEEEcccCeeEEeecc----hhhHHHHhhcccccceEEEec
Confidence 999999999998776655444 45789999999 999999999999999999974 77778888888765332 23
Q ss_pred EcC-CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEE
Q 015301 239 SRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 317 (409)
Q Consensus 239 ~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (409)
|.. +..++++|++|+.|+||+..+ +..+..+.||.. . +.
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr~s----------------------------------gkll~~LsGHs~--~----vN 486 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHRIS----------------------------------GKLLAVLSGHSK--T----VN 486 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEccC----------------------------------CceeEeecCCcc--e----ee
Confidence 433 557999999999999999988 788999999982 3 33
Q ss_pred eeeecC-CCCEEEEEeCCCeEEEEEccC
Q 015301 318 SPEYST-AQKYIYTGSSDNSVYIYDLVS 344 (409)
Q Consensus 318 ~~~~s~-~~~~l~~~~~dg~v~i~d~~~ 344 (409)
.++++| +..++|+++.||+|+||....
T Consensus 487 cVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 487 CVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 334554 567899999999999998753
No 61
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-35 Score=224.19 Aligned_cols=305 Identities=20% Similarity=0.292 Sum_probs=241.5
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
..+.||.+.|+.++.......+.+++.|.+.+||.++++.++.. ..+|.+.|++++|++.+.++++++.|++.+||.
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~---Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT---YTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccccceee---ecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 35679999999999988888999999999999999999977665 567888999999999999999999999999997
Q ss_pred c------CCCcccccc------ceeceeee-e------------eeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEE
Q 015301 114 V------GSSARESLA------NVTEIHKG-L------------DFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYV 168 (409)
Q Consensus 114 ~------~~~~~~~~~------~~~~~~~~-~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v 168 (409)
. ......... ...+.+.. . .-.....+|...|.+..|...|+.+++++.|.+..+
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence 2 211100000 00000000 0 000011368888999999999999999999999999
Q ss_pred EECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEE
Q 015301 169 YDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFIS 248 (409)
Q Consensus 169 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 248 (409)
||+++++++..+.+|....+.++-+ |...++++.+.|.+.++||.| +.-..+..+.+|.+.|+++.|..+. .+++
T Consensus 299 wDVEtge~v~~LtGHd~ELtHcstH-ptQrLVvTsSrDtTFRLWDFR---eaI~sV~VFQGHtdtVTS~vF~~dd-~vVS 373 (481)
T KOG0300|consen 299 WDVETGEVVNILTGHDSELTHCSTH-PTQRLVVTSSRDTTFRLWDFR---EAIQSVAVFQGHTDTVTSVVFNTDD-RVVS 373 (481)
T ss_pred eeeccCceeccccCcchhccccccC-CcceEEEEeccCceeEeccch---hhcceeeeecccccceeEEEEecCC-ceee
Confidence 9999999999999999999999998 889999999999999999997 4556778899999999999998754 5899
Q ss_pred EeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEE
Q 015301 249 NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI 328 (409)
Q Consensus 249 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 328 (409)
|+.|.+|++||++++.. ++.+++.... +..++.+..+..+
T Consensus 374 gSDDrTvKvWdLrNMRs---------------------------------plATIRtdS~-------~NRvavs~g~~iI 413 (481)
T KOG0300|consen 374 GSDDRTVKVWDLRNMRS---------------------------------PLATIRTDSP-------ANRVAVSKGHPII 413 (481)
T ss_pred cCCCceEEEeeeccccC---------------------------------cceeeecCCc-------cceeEeecCCceE
Confidence 99999999999998643 3334333322 2223455567788
Q ss_pred EEEeCCCeEEEEEccCCceEEEe-----ccCCcceeeeEEecCcC--eEEeecCCCeEEEEecCCC
Q 015301 329 YTGSSDNSVYIYDLVSGAQVAKL-----DFHNAPVRDCCWHPIYP--MLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 329 ~~~~~dg~v~i~d~~~~~~~~~~-----~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iw~~~~~ 387 (409)
+.--.+..|++||+. |..+..+ ++|...|++++|..+.. -|++++.|..+.-|++...
T Consensus 414 AiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 414 AIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred EeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 888889999999995 4444433 58999999999987655 6899999999999998754
No 62
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.7e-34 Score=219.43 Aligned_cols=311 Identities=15% Similarity=0.167 Sum_probs=224.7
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeee-eeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQ-KDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIV 112 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w 112 (409)
.|+||.+.|++++|+.||++|||++.|++|+||+++.-.... +.+...-.-+..+.+.|+||-+.+++.. ....+++|
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 688999999999999999999999999999999997642110 1111110112478899999987666554 55689999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
.+...+.-......-..... .....|...+..+-...++.+|++++.|..|.+|+++ |+.+..+......-...+.
T Consensus 161 k~~K~~dG~~~~~~v~~D~~---~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNL---EFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EeeecccCCCCccccccccc---ccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 87544321111110000111 1122455567778888899999999999999999998 8889888777777788889
Q ss_pred eCCCCcEEEEeeCCCeEEEeccccc----ccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccc
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCF----ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTT 268 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 268 (409)
+ |+|+++++++..-.|++|.+--. .+.-.....+.+|...|..++|+++...+++.+.||.+++||++-.....+
T Consensus 237 S-P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 237 S-PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ 315 (420)
T ss_pred C-CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence 8 99999999999999999986310 112334567889999999999999999999999999999999865322211
Q ss_pred ccccccccccccccccccccceeccccCccceeee--ecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY--KGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
.. ..+... ..+...... ..++++|+|+.||.+. ...+++|..++++
T Consensus 316 Dp---------------------------k~Lk~g~~pl~aag~~p----~RL~lsP~g~~lA~s~-gs~l~~~~se~g~ 363 (420)
T KOG2096|consen 316 DP---------------------------KILKEGSAPLHAAGSEP----VRLELSPSGDSLAVSF-GSDLKVFASEDGK 363 (420)
T ss_pred Cc---------------------------hHhhcCCcchhhcCCCc----eEEEeCCCCcEEEeec-CCceEEEEcccCc
Confidence 11 111111 111111111 1456889999888764 4579999999998
Q ss_pred eEEEe-ccCCcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 347 QVAKL-DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 347 ~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
...++ +.|...|.+++|+++|++++|++ |..+++..
T Consensus 364 ~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 364 DYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred cchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 77666 46899999999999999999997 67788776
No 63
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-35 Score=243.28 Aligned_cols=250 Identities=20% Similarity=0.300 Sum_probs=221.0
Q ss_pred ccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec
Q 015301 84 LRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD 163 (409)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 163 (409)
+...|.++.|+|....++++-.+|.|.||+.++..........+. ||.+..|-+..+++++|+.|
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~---------------PvRa~kfiaRknWiv~GsDD 76 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEV---------------PVRAAKFIARKNWIVTGSDD 76 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeeccc---------------chhhheeeeccceEEEecCC
Confidence 556899999999999999999999999999998877655554433 69999999999999999999
Q ss_pred CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC-C
Q 015301 164 NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-D 242 (409)
Q Consensus 164 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 242 (409)
..|+||+..+++.+..+..|.+.|.+++.+ |...++++++.|-+|++||.. ....+.+.+.+|..-|.+++|+| |
T Consensus 77 ~~IrVfnynt~ekV~~FeAH~DyIR~iavH-Pt~P~vLtsSDDm~iKlW~we---~~wa~~qtfeGH~HyVMqv~fnPkD 152 (794)
T KOG0276|consen 77 MQIRVFNYNTGEKVKTFEAHSDYIRSIAVH-PTLPYVLTSSDDMTIKLWDWE---NEWACEQTFEGHEHYVMQVAFNPKD 152 (794)
T ss_pred ceEEEEecccceeeEEeeccccceeeeeec-CCCCeEEecCCccEEEEeecc---CceeeeeEEcCcceEEEEEEecCCC
Confidence 999999999999999999999999999999 777899999999999999984 56788899999999999999999 5
Q ss_pred CCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeec
Q 015301 243 GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYS 322 (409)
Q Consensus 243 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 322 (409)
.+.+++++-|++|++|.+.+ ..+..++++|.....++.... .
T Consensus 153 ~ntFaS~sLDrTVKVWslgs----------------------------------~~~nfTl~gHekGVN~Vdyy~----~ 194 (794)
T KOG0276|consen 153 PNTFASASLDRTVKVWSLGS----------------------------------PHPNFTLEGHEKGVNCVDYYT----G 194 (794)
T ss_pred ccceeeeeccccEEEEEcCC----------------------------------CCCceeeeccccCcceEEecc----C
Confidence 67899999999999999987 456678888886554443221 1
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 323 TAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 323 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
+|..+|++|+.|..|+|||..+..++.++.+|...|..+.|+|.-.+++|||+||+++||+-.+...+
T Consensus 195 gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE 262 (794)
T KOG0276|consen 195 GDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLE 262 (794)
T ss_pred CCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehh
Confidence 34579999999999999999999999999999999999999999999999999999999998776544
No 64
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.7e-33 Score=234.72 Aligned_cols=276 Identities=25% Similarity=0.401 Sum_probs=224.2
Q ss_pred cceeeEEecCceeEeeccc---eEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 3 VGREVNYSGRGRFSAADSC---HVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~---~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
.+.+++|+|++++++++.. ..++..........+.+|...+.++.|+|+++++++++.||.|++|++.++......
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~- 89 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL- 89 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE-
Confidence 3578999999988777553 344444444455678899999999999999999999999999999999876444432
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
..|...|.++.|+|+++++++++.++.+.+||+.+.+...... .|...+.+++|+|++.++++
T Consensus 90 --~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~l~~ 152 (289)
T cd00200 90 --TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR---------------GHTDWVNSVAFSPDGTFVAS 152 (289)
T ss_pred --eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec---------------cCCCcEEEEEEcCcCCEEEE
Confidence 3455589999999998888888889999999998654322211 23446999999999888888
Q ss_pred EEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEE
Q 015301 160 AGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 239 (409)
Q Consensus 160 ~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (409)
++.++.|.+||+.+++.+..+..|...+.+++|+ ++++.+++++.++.+++||++ .......+..|...+.++.|
T Consensus 153 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~d~~----~~~~~~~~~~~~~~i~~~~~ 227 (289)
T cd00200 153 SSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS-PDGEKLLSSSSDGTIKLWDLS----TGKCLGTLRGHENGVNSVAF 227 (289)
T ss_pred EcCCCcEEEEEccccccceeEecCccccceEEEC-CCcCEEEEecCCCcEEEEECC----CCceecchhhcCCceEEEEE
Confidence 8879999999999998888888899999999999 788888888889999999975 56667777788889999999
Q ss_pred cCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEee
Q 015301 240 RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSP 319 (409)
Q Consensus 240 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (409)
+|++.++++++.||.+++||+.+ ......+..|. ..+..+
T Consensus 228 ~~~~~~~~~~~~~~~i~i~~~~~----------------------------------~~~~~~~~~~~------~~i~~~ 267 (289)
T cd00200 228 SPDGYLLASGSEDGTIRVWDLRT----------------------------------GECVQTLSGHT------NSVTSL 267 (289)
T ss_pred cCCCcEEEEEcCCCcEEEEEcCC----------------------------------ceeEEEccccC------CcEEEE
Confidence 99988888888899999999986 23344444443 234566
Q ss_pred eecCCCCEEEEEeCCCeEEEEE
Q 015301 320 EYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 320 ~~s~~~~~l~~~~~dg~v~i~d 341 (409)
+++|++++|++++.||.+++|+
T Consensus 268 ~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 268 AWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EECCCCCEEEEecCCCeEEecC
Confidence 7899999999999999999996
No 65
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.7e-34 Score=243.07 Aligned_cols=348 Identities=19% Similarity=0.231 Sum_probs=245.6
Q ss_pred eeeEEecCceeEee---ccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 5 REVNYSGRGRFSAA---DSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 5 ~~~~~s~dg~~~~~---~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
..++|.|..-++.+ .+....|+|.-......+.+|.++|..++|+|++.++++|++|..|+||+..+...+. .+
T Consensus 13 KglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf---tL 89 (1202)
T KOG0292|consen 13 KGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF---TL 89 (1202)
T ss_pred cceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh---hh
Confidence 35788898877555 3344567766666667899999999999999999999999999999999998775544 46
Q ss_pred ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE
Q 015301 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (409)
.+|-.-|..+.|++.-.+|++++.|.+|+||+..+.++..... +|..-|.|..|+|....+++++
T Consensus 90 ~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt---------------GHnHYVMcAqFhptEDlIVSaS 154 (1202)
T KOG0292|consen 90 LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT---------------GHNHYVMCAQFHPTEDLIVSAS 154 (1202)
T ss_pred ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe---------------cCceEEEeeccCCccceEEEec
Confidence 6777799999999999999999999999999999988755443 5666799999999999999999
Q ss_pred ecCeEEEEECCCCe-----------------------------eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEe
Q 015301 162 SDNFIYVYDLQANK-----------------------------CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVW 212 (409)
Q Consensus 162 ~d~~i~v~d~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 212 (409)
-|.+|+|||+..-+ ....+.+|...|+-++|+ |.-.+|++|+.|..|++|
T Consensus 155 LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh-pTlpliVSG~DDRqVKlW 233 (1202)
T KOG0292|consen 155 LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH-PTLPLIVSGADDRQVKLW 233 (1202)
T ss_pred ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec-CCcceEEecCCcceeeEE
Confidence 99999999985210 123457999999999999 777899999999999999
Q ss_pred cccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceec
Q 015301 213 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 292 (409)
Q Consensus 213 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (409)
.+. ....-.+.+.++|.+.|.++-|+|..+++++.+.|++|++||+.+............ .+-.++..+....+
T Consensus 234 rmn--etKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend----RFW~laahP~lNLf 307 (1202)
T KOG0292|consen 234 RMN--ETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND----RFWILAAHPELNLF 307 (1202)
T ss_pred Eec--cccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCC----eEEEEEecCCccee
Confidence 975 223335567889999999999999999999999999999999988544333211100 00011111111111
Q ss_pred cccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc--eEEEeccC---CcceeeeEEecCc
Q 015301 293 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA--QVAKLDFH---NAPVRDCCWHPIY 367 (409)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~--~~~~~~~~---~~~v~~~~~s~~~ 367 (409)
...++.-+..|+-.. ..|++.-+++.|+..- |..|+-+|+.+.+ .+..++.. ..++.+++++|..
T Consensus 308 AAgHDsGm~VFkleR---------Erpa~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae 377 (1202)
T KOG0292|consen 308 AAGHDSGMIVFKLER---------ERPAYAVNGNGLFYVK-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAE 377 (1202)
T ss_pred eeecCCceEEEEEcc---------cCceEEEcCCEEEEEc-cceEEeeeccccccceeEeccCCCcccCCcceeeecccc
Confidence 111111111111110 0111221233333333 6667777776643 23334432 3578899999987
Q ss_pred C-eEEeec-CCCeEEEEecCCC
Q 015301 368 P-MLISSS-WDCNIVRWEIPGI 387 (409)
Q Consensus 368 ~-~l~s~~-~dg~i~iw~~~~~ 387 (409)
. .|++.. ..|.--++.++..
T Consensus 378 ~~vlics~~~n~~y~L~~ipk~ 399 (1202)
T KOG0292|consen 378 NAVLICSNLDNGEYELVQIPKD 399 (1202)
T ss_pred CeEEEEeccCCCeEEEEEecCc
Confidence 7 444433 3456666666554
No 66
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.4e-33 Score=261.59 Aligned_cols=291 Identities=15% Similarity=0.193 Sum_probs=216.2
Q ss_pred ceeeEEecCceeEeeccceEEEEeeecCC----------CceeecCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCC
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYLPVNG----------PWKVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKN 72 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~----------~~~l~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~ 72 (409)
+.+++|+|||.++++++.......+.... +.....+...|.+++|+| ++.+||+++.||+|++||+.++
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~ 565 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS 565 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC
Confidence 56799999999988876553333332210 111223457899999987 4789999999999999999987
Q ss_pred eeeeeeeecccccceEEEEEeCC-CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEc
Q 015301 73 WKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFS 151 (409)
Q Consensus 73 ~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 151 (409)
..+.. ..+|...|.+++|+| ++.+|++|+.|+.|++||+.++........ ...+.++.|+
T Consensus 566 ~~~~~---~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~----------------~~~v~~v~~~ 626 (793)
T PLN00181 566 QLVTE---MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT----------------KANICCVQFP 626 (793)
T ss_pred eEEEE---ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec----------------CCCeEEEEEe
Confidence 54443 456777999999997 789999999999999999987654222110 1258899995
Q ss_pred -CCCCeEEEEEecCeEEEEECCCCe-eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccc--cCCceeeee
Q 015301 152 -TDGQELVAAGSDNFIYVYDLQANK-CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI--SKGRANGVL 227 (409)
Q Consensus 152 -~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~ 227 (409)
+++.+|++|+.|+.|++||+++.+ .+..+.+|...|.++.|. ++..|++++.|++|++||++... .....+..+
T Consensus 627 ~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~ 704 (793)
T PLN00181 627 SESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF 704 (793)
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE
Confidence 579999999999999999998765 466778999999999997 56789999999999999986321 123566778
Q ss_pred eccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeeccc
Q 015301 228 MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHS 307 (409)
Q Consensus 228 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (409)
.+|...+..++|+|++.+|++|+.|+.|++|+............. ....+.....
T Consensus 705 ~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~-----------------------~~~~~~~~~~-- 759 (793)
T PLN00181 705 MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFK-----------------------TIDPVSGLEV-- 759 (793)
T ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecc-----------------------cCCccccccc--
Confidence 899999999999999999999999999999997653211100000 0000000000
Q ss_pred ceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEc
Q 015301 308 VLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 342 (409)
Q Consensus 308 ~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~ 342 (409)
......+.+++|+|++..|++|+.||.|+||++
T Consensus 760 --~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 760 --DDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred --CCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 011134667789999999999999999999986
No 67
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=5.2e-34 Score=246.23 Aligned_cols=286 Identities=21% Similarity=0.302 Sum_probs=242.4
Q ss_pred Cceeec-CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEE
Q 015301 33 PWKVDG-MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (409)
Q Consensus 33 ~~~l~~-h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~ 111 (409)
...+.+ |...+.|..|. ..++++++.|++|++|+..++..+.. ...+|.+.|.++++...+.+|++|+.|.++++
T Consensus 200 ~~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rv 275 (537)
T KOG0274|consen 200 YKVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERV 275 (537)
T ss_pred ceeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCCEEEEEecCCcEEe
Confidence 344454 66789999998 56799999999999999988755443 36678889999999888899999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC 191 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 191 (409)
||..++++..... +|...+.++.. ....+++|+.|.+|++|++.++..+..+.+|.++|.++.
T Consensus 276 Wd~~sg~C~~~l~---------------gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 276 WDCSTGECTHSLQ---------------GHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred EecCCCcEEEEec---------------CCCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence 9999998765543 45556888776 445688889999999999999999999999999999999
Q ss_pred EeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccc
Q 015301 192 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNS 271 (409)
Q Consensus 192 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 271 (409)
.+ +.++++|+.|++|++||++ ..+++..+.+|...|.++.+.+. ..+++|+.|+.|++||+++..
T Consensus 339 ~~---~~~lvsgs~d~~v~VW~~~----~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~------- 403 (537)
T KOG0274|consen 339 LD---EPLLVSGSYDGTVKVWDPR----TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR------- 403 (537)
T ss_pred ec---CCEEEEEecCceEEEEEhh----hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh-------
Confidence 86 7899999999999999975 89999999999999999988765 889999999999999999831
Q ss_pred cccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEe
Q 015301 272 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 351 (409)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 351 (409)
+++.++.+|..... .+...+++|++++.|+.|++||..+++++..+
T Consensus 404 --------------------------~c~~tl~~h~~~v~--------~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~ 449 (537)
T KOG0274|consen 404 --------------------------KCIHTLQGHTSLVS--------SLLLRDNFLVSSSADGTIKLWDAEEGECLRTL 449 (537)
T ss_pred --------------------------hhhhhhcCCccccc--------ccccccceeEeccccccEEEeecccCceeeee
Confidence 46777777774431 22335789999999999999999999999999
Q ss_pred cc-CCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 352 DF-HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 352 ~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
.+ |...|..+++. ...+++++.||.+++||++++...
T Consensus 450 ~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 450 EGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred ccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence 98 67889998886 457888899999999999987654
No 68
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-34 Score=236.60 Aligned_cols=280 Identities=15% Similarity=0.204 Sum_probs=226.2
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccc
Q 015301 45 TSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLAN 124 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 124 (409)
-++|+. .+.||+|.. ..|++|+..++. +..+.... ...|+++.|+++|.+|++|..+|.|.|||..+.+......
T Consensus 182 lldWss-~n~laValg-~~vylW~~~s~~-v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 182 LLDWSS-ANVLAVALG-QSVYLWSASSGS-VTELCSFG--EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR 256 (484)
T ss_pred Hhhccc-CCeEEEEec-ceEEEEecCCCc-eEEeEecC--CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc
Confidence 367774 456777753 469999998884 33333332 5589999999999999999999999999998776543333
Q ss_pred eeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeE-EcCCCCCeEEEEEeCCCCcEEEEe
Q 015301 125 VTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR-IPAHKSDVNTVCFADETGHLIFSG 203 (409)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~ 203 (409)
. .|...|.+++|. +..+.+|+.++.|..+|++..+.... +.+|...|..++|+ +++.++++|
T Consensus 257 ~--------------~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws-~d~~~lASG 319 (484)
T KOG0305|consen 257 G--------------SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS-PDGNQLASG 319 (484)
T ss_pred C--------------CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC-CCCCeeccC
Confidence 2 155579999997 66799999999999999998776655 88999999999999 999999999
Q ss_pred eCCCeEEEecccccccCCceeeeeeccccceeEEEEcC-CCCeEEEEe--CCCcEEEeeCCCCccccccccccccccccc
Q 015301 204 SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNG--KDQTTKLWDIRKMSSNTTDNSRLRDYDWDY 280 (409)
Q Consensus 204 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 280 (409)
+.|+.+.|||.. ...+...+..|...|.+++|+| ...+||+|+ .|++|++||..+.
T Consensus 320 gnDN~~~Iwd~~----~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g----------------- 378 (484)
T KOG0305|consen 320 GNDNVVFIWDGL----SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG----------------- 378 (484)
T ss_pred CCccceEeccCC----CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-----------------
Confidence 999999999963 7778888999999999999999 456788765 4999999999873
Q ss_pred ccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEE--eCCCeEEEEEccCCceEEEeccCCcce
Q 015301 281 RWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG--SSDNSVYIYDLVSGAQVAKLDFHNAPV 358 (409)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~--~~dg~v~i~d~~~~~~~~~~~~~~~~v 358 (409)
..+...... .-+.++.|++..+-|+++ ..++.|.||+..+.+.+..+.+|...|
T Consensus 379 -----------------~~i~~vdtg-------sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RV 434 (484)
T KOG0305|consen 379 -----------------ARIDSVDTG-------SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRV 434 (484)
T ss_pred -----------------cEecccccC-------CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCccee
Confidence 223322222 123455677777656553 457899999999999999999999999
Q ss_pred eeeEEecCcCeEEeecCCCeEEEEecCCCcccC
Q 015301 359 RDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAP 391 (409)
Q Consensus 359 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 391 (409)
..++++|||..+++|+.|.++++|++-+..+.+
T Consensus 435 l~la~SPdg~~i~t~a~DETlrfw~~f~~~~~~ 467 (484)
T KOG0305|consen 435 LYLALSPDGETIVTGAADETLRFWNLFDERPKS 467 (484)
T ss_pred EEEEECCCCCEEEEecccCcEEeccccCCCCcc
Confidence 999999999999999999999999998764433
No 69
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=8.7e-33 Score=238.56 Aligned_cols=298 Identities=17% Similarity=0.182 Sum_probs=218.2
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeee----------eeecccccceEEEEEeCC-CCcEEEEEec
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQK----------DIETKALRWTITDTSLSP-DQRFLVYASI 105 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~----------~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 105 (409)
..|-..|.....++++..+++++.+.....|+...+..+.. .....+|.+.|.+++|+| ++++|++|+.
T Consensus 17 ~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~ 96 (493)
T PTZ00421 17 DRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASE 96 (493)
T ss_pred ccceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeC
Confidence 34556677788888877788888888888888665532211 112456888999999999 8899999999
Q ss_pred CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEEEecCeEEEEECCCCeeeeEEcCCC
Q 015301 106 CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKCSLRIPAHK 184 (409)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 184 (409)
|+.|++||+.++....... .. .....+|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+.+|.
T Consensus 97 DgtIkIWdi~~~~~~~~~~--~~------l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~ 168 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNIS--DP------IVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS 168 (493)
T ss_pred CCEEEEEecCCCccccccC--cc------eEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC
Confidence 9999999997653211100 00 01123567789999999975 689999999999999999999998999999
Q ss_pred CCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccc-eeEEEEcCCCCeEEEEe----CCCcEEEee
Q 015301 185 SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEG-ITFIDSRRDGRYFISNG----KDQTTKLWD 259 (409)
Q Consensus 185 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~----~dg~i~iwd 259 (409)
..|.+++|+ +++.+|++++.|+.|++||++ .+..+..+.+|.+. +..+.|.+++..+++++ .|+.|++||
T Consensus 169 ~~V~sla~s-pdG~lLatgs~Dg~IrIwD~r----sg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWD 243 (493)
T PTZ00421 169 DQITSLEWN-LDGSLLCTTSKDKKLNIIDPR----DGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWD 243 (493)
T ss_pred CceEEEEEE-CCCCEEEEecCCCEEEEEECC----CCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEe
Confidence 999999999 899999999999999999987 56677778888765 34677888888777654 478999999
Q ss_pred CCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe-CCCeEE
Q 015301 260 IRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS-SDNSVY 338 (409)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~v~ 338 (409)
+++... ++.....+.. .....+.|++++++|++++ .|+.|+
T Consensus 244 lr~~~~---------------------------------p~~~~~~d~~-----~~~~~~~~d~d~~~L~lggkgDg~Ir 285 (493)
T PTZ00421 244 TRKMAS---------------------------------PYSTVDLDQS-----SALFIPFFDEDTNLLYIGSKGEGNIR 285 (493)
T ss_pred CCCCCC---------------------------------ceeEeccCCC-----CceEEEEEcCCCCEEEEEEeCCCeEE
Confidence 987331 1111111110 1233456889999999887 599999
Q ss_pred EEEccCCceEEEecc-CCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 339 IYDLVSGAQVAKLDF-HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 339 i~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
+||+.+++.+..... +..++..++|.|....=+. .--..+++.+...
T Consensus 286 iwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~~dv~--~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 286 CFELMNERLTFCSSYSSVEPHKGLCMMPKWSLDTR--KCEIARFYALTYH 333 (493)
T ss_pred EEEeeCCceEEEeeccCCCCCcceEeccccccccc--ceeeeEEEEecCC
Confidence 999999988776543 4567888999885321111 1123466666543
No 70
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=4.4e-34 Score=214.83 Aligned_cols=300 Identities=16% Similarity=0.251 Sum_probs=231.3
Q ss_pred ceeecCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCe------------eeeeeeecccccceEEEEEeCC-CCcE
Q 015301 34 WKVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNW------------KIQKDIETKALRWTITDTSLSP-DQRF 99 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~------------~~~~~~~~~~~~~~v~~~~~s~-~~~~ 99 (409)
-...-|.+.|+++...+ .|+++++|+.||.|.+||++... ++.......+|+..|.++.|-| |...
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 35567999999999987 68999999999999999997542 1112223456788999999999 5667
Q ss_pred EEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC---CCCeEEEEEecCeEEEEECCCCee
Q 015301 100 LVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST---DGQELVAAGSDNFIYVYDLQANKC 176 (409)
Q Consensus 100 l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~v~d~~~~~~ 176 (409)
+.+++.|.++++||..+.+....+++.. .|++-+++| ...++++|..+-.|++.|+.+|..
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~me~----------------~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~ 180 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFKMEG----------------KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF 180 (397)
T ss_pred eecccccceEEEeecccceeeEEeecCc----------------eeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc
Confidence 8888999999999999887655555433 488888888 345788888899999999999999
Q ss_pred eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccc-----------cCCceeeeeeccccceeEEEEcCCCCe
Q 015301 177 SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI-----------SKGRANGVLMGHLEGITFIDSRRDGRY 245 (409)
Q Consensus 177 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~ 245 (409)
...+.+|...|.++.|+|...-.|++|+.||.|++||+|... .....++.-..|.+.+..++|+.++.+
T Consensus 181 sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~ 260 (397)
T KOG4283|consen 181 SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY 260 (397)
T ss_pred eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh
Confidence 999999999999999998888889999999999999998320 111122234468889999999999999
Q ss_pred EEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCC
Q 015301 246 FISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ 325 (409)
Q Consensus 246 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 325 (409)
+++++.|..+++|+..+++....... ..+..-+.+.. +... +.+.
T Consensus 261 l~~~gtd~r~r~wn~~~G~ntl~~~g--------------------------~~~~n~~~~~~--------~~~~-~~~s 305 (397)
T KOG4283|consen 261 LASCGTDDRIRVWNMESGRNTLREFG--------------------------PIIHNQTTSFA--------VHIQ-SMDS 305 (397)
T ss_pred hhhccCccceEEeecccCcccccccc--------------------------cccccccccce--------EEEe-eccc
Confidence 99999999999999988543222111 11111011100 0011 1123
Q ss_pred CEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 326 KYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 326 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
..++---.++.+.++++-+++.+..+..|...|.+..+-|+=+.+.++..|+.|..|-.
T Consensus 306 ~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 306 DVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 33444445689999999999999999999999999999999999999999999999987
No 71
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.9e-35 Score=226.44 Aligned_cols=288 Identities=16% Similarity=0.176 Sum_probs=230.9
Q ss_pred ceeecCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w 112 (409)
..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+....+... ...|.+.|..+++.. ..+++++.|.+|+.|
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~---f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT---FKAHEGLVRGICVTQ--TSFFTVGDDKTVKQW 134 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe---eecccCceeeEEecc--cceEEecCCcceeee
Confidence 3679999999999999987 7899999999999999987655444 556777999999986 678899999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
.++..- ..... ....+..+.-+..+..+++++. .|.|||.....++..+.-....|.++.|
T Consensus 135 k~~~~p---~~til--------------g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkf 195 (433)
T KOG0268|consen 135 KIDGPP---LHTIL--------------GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKF 195 (433)
T ss_pred eccCCc---ceeee--------------ccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEec
Confidence 987631 11100 0113666666667778888874 5999999999999999888889999999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccc
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 272 (409)
+|-..++|+++..|+.|.+||+| ...++..+. -.-.-+.|+|+|.+-.++++++|..++.||++...
T Consensus 196 NpvETsILas~~sDrsIvLyD~R----~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~-------- 262 (433)
T KOG0268|consen 196 NPVETSILASCASDRSIVLYDLR----QASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS-------- 262 (433)
T ss_pred CCCcchheeeeccCCceEEEecc----cCCccceee-eeccccceecCccccceeeccccccceehhhhhhc--------
Confidence 98888899999999999999998 444443332 12335779999988889999999999999999843
Q ss_pred ccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec
Q 015301 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD 352 (409)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 352 (409)
.++..+.+|. ..+.+++|||.|+-+++|+.|.+|+||.++.+.....+.
T Consensus 263 -------------------------~p~~v~~dhv------sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh 311 (433)
T KOG0268|consen 263 -------------------------RPLNVHKDHV------SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH 311 (433)
T ss_pred -------------------------ccchhhcccc------eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh
Confidence 4566667766 667788999999999999999999999998776544331
Q ss_pred c-CCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 353 F-HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 353 ~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
. -...|.++.||.|.+++++||.|+.|++|.-...++
T Consensus 312 tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 312 TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred HhhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 1 234799999999999999999999999998765443
No 72
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=5.5e-34 Score=249.77 Aligned_cols=311 Identities=17% Similarity=0.190 Sum_probs=231.5
Q ss_pred eecCCCCeEEEEECCCCCEEEEEe--CCCcEEEEEcCCC--------e-eeeeeeecccccceEEEEEeCCCCcEEEEEe
Q 015301 36 VDGMNSRVYTSQFSNDGSFFVAAS--QESNIKVYNVDKN--------W-KIQKDIETKALRWTITDTSLSPDQRFLVYAS 104 (409)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~--~d~~i~vw~~~~~--------~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 104 (409)
+.++...|.+++.+|||..+|||+ .|+.++||+.+.- + ..........|.+.|+|+.|+|||++||+|+
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 344557799999999999999999 8999999997532 1 1122334566888999999999999999999
Q ss_pred cCCEEEEEEcCCCccccccce---eceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc
Q 015301 105 ICAIVNIVDVGSSARESLANV---TEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP 181 (409)
Q Consensus 105 ~dg~i~~w~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 181 (409)
.|+.|.+|............. ..............+|...|..++|+|++.+|++++.|++|.+|+..+.+.+..+.
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee
Confidence 999999999874110000100 00011111222233688899999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccc------cceeEEEEcCCCCeEEEEeC----
Q 015301 182 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL------EGITFIDSRRDGRYFISNGK---- 251 (409)
Q Consensus 182 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~---- 251 (409)
+|.+.|..+.|. |-|++|++-+.|++|++|++. .....+.+.++- ..+..+.|+|||++|++...
T Consensus 169 ~H~s~VKGvs~D-P~Gky~ASqsdDrtikvwrt~----dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~ 243 (942)
T KOG0973|consen 169 GHQSLVKGVSWD-PIGKYFASQSDDRTLKVWRTS----DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG 243 (942)
T ss_pred cccccccceEEC-CccCeeeeecCCceEEEEEcc----cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence 999999999999 899999999999999999954 444444444332 34678999999999998643
Q ss_pred CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeec-C-------
Q 015301 252 DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYS-T------- 323 (409)
Q Consensus 252 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~------- 323 (409)
-.++.|.+-.+ ...-..+-||.....+ ..|+|.+- .
T Consensus 244 ~~~~~IieR~t----------------------------------Wk~~~~LvGH~~p~ev--vrFnP~lfe~~~~ng~~ 287 (942)
T KOG0973|consen 244 KSTIAIIERGT----------------------------------WKVDKDLVGHSAPVEV--VRFNPKLFERNNKNGTS 287 (942)
T ss_pred cceeEEEecCC----------------------------------ceeeeeeecCCCceEE--EEeChHHhccccccCCc
Confidence 22455555433 2334455566643322 22333211 0
Q ss_pred -CC----CEEEEEeCCCeEEEEEccCCceEEEec-cCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 324 -AQ----KYIYTGSSDNSVYIYDLVSGAQVAKLD-FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 324 -~~----~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
.. ..+|+|+.|++|.||.....+++..+. -....|.+++|+|||..|+.+|.||+|.+..+++.
T Consensus 288 ~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 288 TQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred cCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 11 168999999999999998888876654 24678999999999999999999999999999764
No 73
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.2e-32 Score=196.31 Aligned_cols=295 Identities=20% Similarity=0.292 Sum_probs=231.3
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee------------eeeeeecccccceEEEEEeCCCCcEEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK------------IQKDIETKALRWTITDTSLSPDQRFLVY 102 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 102 (409)
.....+..|.+++|+|.|.+.|+|+...+++|.....-.. .......+.|.+.|.|.+|+|+|.+|++
T Consensus 27 ~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat 106 (350)
T KOG0641|consen 27 NILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT 106 (350)
T ss_pred EEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence 3445667899999999999999999999999876542110 1122334567889999999999999999
Q ss_pred EecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC----CCeEEEEEe-cCeEEEEECCCCeee
Q 015301 103 ASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD----GQELVAAGS-DNFIYVYDLQANKCS 177 (409)
Q Consensus 103 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~-d~~i~v~d~~~~~~~ 177 (409)
|+.|.+|++..+..........-. +| .-|.+.|..++|..+ +..|++++. |..|++-|...|+..
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dl------e~----nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDL------EF----NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGF 176 (350)
T ss_pred cCCCceEEEEecccccccccCcce------ee----eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcc
Confidence 999999999887665443222111 11 135567999999753 456666654 678888899999999
Q ss_pred eEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec-------cccceeEEEEcCCCCeEEEEe
Q 015301 178 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG-------HLEGITFIDSRRDGRYFISNG 250 (409)
Q Consensus 178 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~ 250 (409)
+.+.+|++.|.++- + .++-++++|+.|.+|++||+| ...++..+.. ....|.+++..|.|++|++|.
T Consensus 177 ~a~sghtghilaly-s-wn~~m~~sgsqdktirfwdlr----v~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~ 250 (350)
T KOG0641|consen 177 HALSGHTGHILALY-S-WNGAMFASGSQDKTIRFWDLR----VNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH 250 (350)
T ss_pred eeecCCcccEEEEE-E-ecCcEEEccCCCceEEEEeee----ccceeeeccCcccCCCcccceeEEEEECCCcceeeecc
Confidence 99999999998873 3 568999999999999999998 3334433321 235789999999999999999
Q ss_pred CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEE
Q 015301 251 KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT 330 (409)
Q Consensus 251 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 330 (409)
.|....+||++. ++.++.+..|... +.++.|||...|+++
T Consensus 251 ~dssc~lydirg----------------------------------~r~iq~f~phsad------ir~vrfsp~a~yllt 290 (350)
T KOG0641|consen 251 ADSSCMLYDIRG----------------------------------GRMIQRFHPHSAD------IRCVRFSPGAHYLLT 290 (350)
T ss_pred CCCceEEEEeeC----------------------------------CceeeeeCCCccc------eeEEEeCCCceEEEE
Confidence 999999999998 6778888888743 344579999999999
Q ss_pred EeCCCeEEEEEccCC----ceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 331 GSSDNSVYIYDLVSG----AQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 331 ~~~dg~v~i~d~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
++.|..|++-|+... -++.....|...+..+.|+|..-.+++.+.|.++.+|-++
T Consensus 291 ~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 291 CSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 999999999998532 2344556789999999999998899999999999999875
No 74
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.9e-33 Score=221.34 Aligned_cols=302 Identities=16% Similarity=0.134 Sum_probs=237.8
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee--------------ec-ccccceEEEEEeCCCCc
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI--------------ET-KALRWTITDTSLSPDQR 98 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~--------------~~-~~~~~~v~~~~~s~~~~ 98 (409)
..+..|.-+|.|++++|++++.++++.+++|.=|++.++....... .. ..|...+.+++.++|++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 4677899999999999999999999999999999998875331111 11 26778899999999999
Q ss_pred EEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeee
Q 015301 99 FLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSL 178 (409)
Q Consensus 99 ~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 178 (409)
+||+|+.|..|.||+.++.+..... .+|...|.+++|-.....+++++.|..|++|+++....+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~---------------~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve 280 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVF---------------KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE 280 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcc---------------cccccceeeeeeecCccceeeeecCCceEEEehhHhHHHH
Confidence 9999999999999999988754432 3567789999999988899999999999999999999999
Q ss_pred EEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEe
Q 015301 179 RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLW 258 (409)
Q Consensus 179 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 258 (409)
++.+|.+.|..+... ..+..+-+|+.|+++++|++ .......+.++.+.+.+++|-. ...+++|+.+|.|.+|
T Consensus 281 tlyGHqd~v~~IdaL-~reR~vtVGgrDrT~rlwKi-----~eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLW 353 (479)
T KOG0299|consen 281 TLYGHQDGVLGIDAL-SRERCVTVGGRDRTVRLWKI-----PEESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALW 353 (479)
T ss_pred HHhCCccceeeechh-cccceEEeccccceeEEEec-----cccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEe
Confidence 999999999999988 67777777889999999997 3344456778888999999974 5679999999999999
Q ss_pred eCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEE
Q 015301 259 DIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVY 338 (409)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~ 338 (409)
++-+............ .. ..+. .......+.+++..|...++|+|+.+|.|+
T Consensus 354 s~~KKkplf~~~~AHg---------------------v~------~~~~-~~~~~~Witsla~i~~sdL~asGS~~G~vr 405 (479)
T KOG0299|consen 354 SLLKKKPLFTSRLAHG---------------------VI------PELD-PVNGNFWITSLAVIPGSDLLASGSWSGCVR 405 (479)
T ss_pred eecccCceeEeecccc---------------------cc------CCcc-ccccccceeeeEecccCceEEecCCCCceE
Confidence 9987443322111000 00 0000 011113667778889999999999999999
Q ss_pred EEEccCC----ceEEEeccCCcceeeeEEecCcCe-EEeecCCCeEEEEecCC
Q 015301 339 IYDLVSG----AQVAKLDFHNAPVRDCCWHPIYPM-LISSSWDCNIVRWEIPG 386 (409)
Q Consensus 339 i~d~~~~----~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~ 386 (409)
+|-+..+ +++..+. -.+.|++++|+++|+. ++..+....+--|-...
T Consensus 406 LW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k 457 (479)
T KOG0299|consen 406 LWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLK 457 (479)
T ss_pred EEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEee
Confidence 9999887 4566666 6789999999999994 44556666666665543
No 75
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=8.1e-33 Score=218.56 Aligned_cols=282 Identities=18% Similarity=0.259 Sum_probs=234.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (409)
..|+++...|....++||+.|.++.++|...++.+. .+.+|...|+.+.|+|+...+++++.|..|++|........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 568889998887889999999999999998874443 46778889999999999999999999999999998766532
Q ss_pred cccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcC--CCCCeEEEEEeCCCCc
Q 015301 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA--HKSDVNTVCFADETGH 198 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~ 198 (409)
... ..|..+|+.+..+|.|.||++++.|+...+.|++++..+..... ..-.+++.+|+ |||.
T Consensus 297 ~~~---------------~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fH-pDgL 360 (506)
T KOG0289|consen 297 TSS---------------RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFH-PDGL 360 (506)
T ss_pred ccc---------------ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEc-CCce
Confidence 221 14556899999999999999999999999999999988776543 23458999999 9999
Q ss_pred EEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccc
Q 015301 199 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDW 278 (409)
Q Consensus 199 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 278 (409)
+|.+|..||.++|||+. .......+.+|.++|..++|+.+|-+|++++.|+.|++||+|+..
T Consensus 361 ifgtgt~d~~vkiwdlk----s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~-------------- 422 (506)
T KOG0289|consen 361 IFGTGTPDGVVKIWDLK----SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK-------------- 422 (506)
T ss_pred EEeccCCCceEEEEEcC----CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc--------------
Confidence 99999999999999975 666788899999999999999999999999999999999999833
Q ss_pred ccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc--CCceEEEeccCCc
Q 015301 279 DYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV--SGAQVAKLDFHNA 356 (409)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~--~~~~~~~~~~~~~ 356 (409)
...++..... ..+.++.|++.|.+|+.++.|=.|++++-. +...+..+..|.+
T Consensus 423 --------------------n~kt~~l~~~-----~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg 477 (506)
T KOG0289|consen 423 --------------------NFKTIQLDEK-----KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSG 477 (506)
T ss_pred --------------------ccceeecccc-----ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhccc
Confidence 2223322221 113355688889999999888777777633 4567888888999
Q ss_pred ceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 357 PVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 357 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
..+.+.|....++++++|.|..++++.+
T Consensus 478 ~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 478 LSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccceeeecccceEEeeccchhheEEeec
Confidence 9999999999999999999999988765
No 76
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-32 Score=206.89 Aligned_cols=280 Identities=11% Similarity=0.107 Sum_probs=220.7
Q ss_pred CCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCC
Q 015301 39 MNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS 117 (409)
Q Consensus 39 h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~ 117 (409)
-.+.|.+++||| ...+++.+|.|++||+|+++....... .....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 457899999999 455666899999999999987422222 345567889999999999999999999999999999998
Q ss_pred ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC--eEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCC
Q 015301 118 ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ--ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE 195 (409)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 195 (409)
+..... .|..+|..+.|-+... .|++|+.|.+|+.||.++..++.++. -...+.++..-
T Consensus 105 Q~~~v~----------------~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~-- 165 (347)
T KOG0647|consen 105 QVSQVA----------------AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL-- 165 (347)
T ss_pred Ceeeee----------------ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--
Confidence 654332 3455899999988655 89999999999999999999888876 35667777654
Q ss_pred CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccc
Q 015301 196 TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 275 (409)
Q Consensus 196 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 275 (409)
..+++++..+..|.+|+++......+.. ...-+-.+.+++..++.+..+.|+-+|.+.+..+.....
T Consensus 166 -~pm~vVata~r~i~vynL~n~~te~k~~--~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~---------- 232 (347)
T KOG0647|consen 166 -YPMAVVATAERHIAVYNLENPPTEFKRI--ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP---------- 232 (347)
T ss_pred -CceeEEEecCCcEEEEEcCCCcchhhhh--cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc----------
Confidence 5678888999999999986322211111 122345688999988888889999999999999887322
Q ss_pred cccccccccccccceeccccCccceeeeecccce---eeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec
Q 015301 276 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL---RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD 352 (409)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 352 (409)
..-..|+.|... ...+..+.+++|.|....|++++.||++.+||-.....+.+.+
T Consensus 233 ----------------------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~ 290 (347)
T KOG0647|consen 233 ----------------------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE 290 (347)
T ss_pred ----------------------cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccC
Confidence 223455555531 1224566788999999999999999999999998888899989
Q ss_pred cCCcceeeeEEecCcCeEEee
Q 015301 353 FHNAPVRDCCWHPIYPMLISS 373 (409)
Q Consensus 353 ~~~~~v~~~~~s~~~~~l~s~ 373 (409)
.|..+|++.+|+.+|.+++-+
T Consensus 291 ~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 291 THPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred cCCCccceeEecCCCCEEEEE
Confidence 999999999999999977654
No 77
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=214.89 Aligned_cols=256 Identities=18% Similarity=0.252 Sum_probs=209.9
Q ss_pred cceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC
Q 015301 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN 164 (409)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 164 (409)
.+.+.|..|+|||++|++|+.||.|.+|+..+++...-.+......-+ -+..+|.|+.|+.|...+++|+.||
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fM-------Mmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFM-------MMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhccee-------ecccceEEEeecccHHHhhccCcCC
Confidence 346889999999999999999999999999999876554443322111 2344799999999999999999999
Q ss_pred eEEEEECCCCeeeeEEc-CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC
Q 015301 165 FIYVYDLQANKCSLRIP-AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG 243 (409)
Q Consensus 165 ~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 243 (409)
.|++|.+++|.+++.+. .|+..|+|+.|+ .++..+++++.|.++++.-++ .+++++.+++|...|+...|.++|
T Consensus 286 kIKvWri~tG~ClRrFdrAHtkGvt~l~FS-rD~SqiLS~sfD~tvRiHGlK----SGK~LKEfrGHsSyvn~a~ft~dG 360 (508)
T KOG0275|consen 286 KIKVWRIETGQCLRRFDRAHTKGVTCLSFS-RDNSQILSASFDQTVRIHGLK----SGKCLKEFRGHSSYVNEATFTDDG 360 (508)
T ss_pred cEEEEEEecchHHHHhhhhhccCeeEEEEc-cCcchhhcccccceEEEeccc----cchhHHHhcCccccccceEEcCCC
Confidence 99999999999999985 899999999999 899999999999999999965 899999999999999999999999
Q ss_pred CeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC
Q 015301 244 RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST 323 (409)
Q Consensus 244 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 323 (409)
..+++++.||+|++|+.++.+|... |+.......+...+.-| .
T Consensus 361 ~~iisaSsDgtvkvW~~KtteC~~T----------------------------------fk~~~~d~~vnsv~~~P---K 403 (508)
T KOG0275|consen 361 HHIISASSDGTVKVWHGKTTECLST----------------------------------FKPLGTDYPVNSVILLP---K 403 (508)
T ss_pred CeEEEecCCccEEEecCcchhhhhh----------------------------------ccCCCCcccceeEEEcC---C
Confidence 9999999999999999998555443 33322222222222222 2
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceEEEecc---CCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 324 AQKYIYTGSSDNSVYIYDLVSGAQVAKLDF---HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 324 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
+...++++...++|+|.++ .|+.+..+.. ..+...+.+.||.|.+++..+.|+.++.+.+.++..+
T Consensus 404 npeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE 472 (508)
T KOG0275|consen 404 NPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLE 472 (508)
T ss_pred CCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCcee
Confidence 4567888888999999998 6788887753 2345667789999999999999999999999887654
No 78
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=9.1e-34 Score=226.86 Aligned_cols=253 Identities=18% Similarity=0.244 Sum_probs=208.4
Q ss_pred eeecccccceEEEEEeCC-CCcEEEEEecCCEEEEEEcCCC-ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC
Q 015301 78 DIETKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGSS-ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ 155 (409)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (409)
.....+|...|+++.|.| .+.+|++++.|+.|+||++... ++.... .+|..+|.+++|+++|.
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf---------------~gH~k~Vrd~~~s~~g~ 271 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF---------------KGHRKPVRDASFNNCGT 271 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh---------------hcchhhhhhhhccccCC
Confidence 345678999999999999 7899999999999999999773 322221 25677899999999999
Q ss_pred eEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccccee
Q 015301 156 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 235 (409)
Q Consensus 156 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~ 235 (409)
.+++++.|+.|++||.++|+++..+. ....++|+.|.|.+.+.+++|+.|+.|+.||+| .++.++.+..|.+.|.
T Consensus 272 ~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR----s~kvvqeYd~hLg~i~ 346 (503)
T KOG0282|consen 272 SFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR----SGKVVQEYDRHLGAIL 346 (503)
T ss_pred eeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEecc----chHHHHHHHhhhhhee
Confidence 99999999999999999999999886 356789999996666999999999999999987 8889999999999999
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEE
Q 015301 236 FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRC 315 (409)
Q Consensus 236 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (409)
.+.|-++|+++++.+.|++++||+.+.+..... +.....|.
T Consensus 347 ~i~F~~~g~rFissSDdks~riWe~~~~v~ik~-------------------------------i~~~~~hs-------- 387 (503)
T KOG0282|consen 347 DITFVDEGRRFISSSDDKSVRIWENRIPVPIKN-------------------------------IADPEMHT-------- 387 (503)
T ss_pred eeEEccCCceEeeeccCccEEEEEcCCCccchh-------------------------------hcchhhcc--------
Confidence 999999999999999999999999887332111 11111111
Q ss_pred EEeeeecCCCCEEEEEeCCCeEEEEEccCC---ceEEEeccCC--cceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 316 YFSPEYSTAQKYIYTGSSDNSVYIYDLVSG---AQVAKLDFHN--APVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 316 ~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~---~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
.-++..+|+++++++-+.|+.|.+|.+... .....+++|. +.-..+.|||||++|++|+.||.+.+||..+...
T Consensus 388 mP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl 466 (503)
T KOG0282|consen 388 MPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL 466 (503)
T ss_pred CcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhh
Confidence 123467889999999999999999997543 2334566774 4556789999999999999999999999987654
No 79
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-32 Score=201.64 Aligned_cols=245 Identities=15% Similarity=0.252 Sum_probs=197.4
Q ss_pred CCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC-CCcEEEEEecCCEEEEEEcCC
Q 015301 39 MNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGS 116 (409)
Q Consensus 39 h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w~~~~ 116 (409)
-.+.+..++|+++. +.+++++.||++++||+... ...+...+.|...|.++.|++ ++..+++++.|++|++|+...
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 45789999999854 57889999999999995543 334556778888999999998 466778889999999999877
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCC
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE 195 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 195 (409)
++..... .+|...|...+|+| ..+.+++++.|+.+++||++..-....++.|...+.++.|+.-
T Consensus 137 ~~Sv~Tf---------------~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky 201 (311)
T KOG0277|consen 137 PNSVQTF---------------NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKY 201 (311)
T ss_pred CcceEee---------------cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeeccccc
Confidence 6543331 24666899999999 6788999999999999999865555558999999999999988
Q ss_pred CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC-CCeEEEEeCCCcEEEeeCCCCccccccccccc
Q 015301 196 TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD-GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLR 274 (409)
Q Consensus 196 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 274 (409)
+.+++++|+.|+.|+.||+|. -..++..+.+|.-.|..+.|+|. ...|++++.|-+++|||.....
T Consensus 202 ~~~vl~Tg~vd~~vr~wDir~---~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d---------- 268 (311)
T KOG0277|consen 202 NHNVLATGGVDNLVRGWDIRN---LRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD---------- 268 (311)
T ss_pred CCcEEEecCCCceEEEEehhh---ccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch----------
Confidence 899999999999999999983 34667888999999999999996 4578999999999999987532
Q ss_pred ccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC-CCCEEEEEeCCCeEEEEEc
Q 015301 275 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGSSDNSVYIYDL 342 (409)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~v~i~d~ 342 (409)
..+.+...|. ..+..++||+ ++.++|+.+-|+.++||+.
T Consensus 269 -----------------------s~~e~~~~Ht------EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 269 -----------------------SAIETVDHHT------EFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred -----------------------hhhhhhhccc------eEEeccccccccCceeeecccccceeeecc
Confidence 3344444454 3333444544 5679999999999999984
No 80
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=3.4e-32 Score=211.44 Aligned_cols=286 Identities=18% Similarity=0.266 Sum_probs=218.3
Q ss_pred ceeEeeccceEEEEeeecC--CCceeecCCCCeEEEEECCCC---CEEEEEeCCCcEEEEEcCCCeeeee-eeecccccc
Q 015301 13 GRFSAADSCHVLSRYLPVN--GPWKVDGMNSRVYTSQFSNDG---SFFVAASQESNIKVYNVDKNWKIQK-DIETKALRW 86 (409)
Q Consensus 13 g~~~~~~~~~~~~~~~~~~--~~~~l~~h~~~v~~~~~s~~~---~~l~t~~~d~~i~vw~~~~~~~~~~-~~~~~~~~~ 86 (409)
++++.+++++...+.+... ...++.||.++|.+++|--.. ..|++++.|.++++|..+.+..... .....+|..
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~ 194 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKR 194 (423)
T ss_pred CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccccc
Confidence 4567776666555555544 445788999999988884333 3599999999999999987744322 223458999
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceee----------eeeeecCCCCcceeeEEEEEcCCCCe
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHK----------GLDFSADGDEDEFGIFSVKFSTDGQE 156 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (409)
.|.++...+++..+++|+.|..|.+|+................. .-.-.....+|..+|.++.|++ ...
T Consensus 195 ~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v 273 (423)
T KOG0313|consen 195 SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATV 273 (423)
T ss_pred ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCc
Confidence 99999999999999999999999999944332221111111000 0001112248999999999998 667
Q ss_pred EEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeE
Q 015301 157 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF 236 (409)
Q Consensus 157 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 236 (409)
+++++.|.+|+.||++++..+.++.+ ....+++.++ +..++|++|+.|..+++||.|.. ........+.+|++.|.+
T Consensus 274 ~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~-~~~~Ll~~gssdr~irl~DPR~~-~gs~v~~s~~gH~nwVss 350 (423)
T KOG0313|consen 274 IYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYS-PLSKLLASGSSDRHIRLWDPRTG-DGSVVSQSLIGHKNWVSS 350 (423)
T ss_pred eEeecccceEEEEEeecccceeeeec-CcceeEeecc-cccceeeecCCCCceeecCCCCC-CCceeEEeeecchhhhhh
Confidence 99999999999999999998888874 5789999999 78999999999999999999954 334456778999999999
Q ss_pred EEEcCCC-CeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEE
Q 015301 237 IDSRRDG-RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRC 315 (409)
Q Consensus 237 ~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (409)
+.|+|.. .+|++++.|+++++||+|+.. .++..+.+|. .-
T Consensus 351 vkwsp~~~~~~~S~S~D~t~klWDvRS~k---------------------------------~plydI~~h~------DK 391 (423)
T KOG0313|consen 351 VKWSPTNEFQLVSGSYDNTVKLWDVRSTK---------------------------------APLYDIAGHN------DK 391 (423)
T ss_pred eecCCCCceEEEEEecCCeEEEEEeccCC---------------------------------CcceeeccCC------ce
Confidence 9999965 468899999999999999832 3566677775 34
Q ss_pred EEeeeecCCCCEEEEEeCCCeEEEEEc
Q 015301 316 YFSPEYSTAQKYIYTGSSDNSVYIYDL 342 (409)
Q Consensus 316 ~~~~~~s~~~~~l~~~~~dg~v~i~d~ 342 (409)
+++..|. ++.++++|+.|.+|+|+..
T Consensus 392 vl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 392 VLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred EEEEecc-CCceEEeccCcceEEEecc
Confidence 4555665 3679999999999999864
No 81
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-31 Score=223.95 Aligned_cols=284 Identities=15% Similarity=0.247 Sum_probs=232.8
Q ss_pred CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEE-EEeCC-CCcEEEEEecCCEEE
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITD-TSLSP-DQRFLVYASICAIVN 110 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~-~~~s~-~~~~l~~~~~dg~i~ 110 (409)
...+.||...|..+++.+. ..++++|.||++++|+-..++-+ ......++.+-|.. +++-+ ++-.|++|+.|..+.
T Consensus 7 s~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l-~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYL-ETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred EEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccc-cceecccCcceeeccceeccccCcceEeecccceEE
Confidence 3578899999999998754 47999999999999997655333 22334445556665 77775 455699999999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEE
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTV 190 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~ 190 (409)
+|...+....... .+|...|.++....++. +++|+.|.++++|-. +++...+++|+..|.++
T Consensus 85 v~~~~~~~P~~~L---------------kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv 146 (745)
T KOG0301|consen 85 VFKLSQAEPLYTL---------------KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAV 146 (745)
T ss_pred EEecCCCCchhhh---------------hccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeee
Confidence 9999877653332 26777899999888887 999999999999986 45666799999999999
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccc
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDN 270 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 270 (409)
+.. +++ .+++|+.|.+|++|. .++.++.+.+|.+-|+.+++-+++ .|++++.||.|++|++.
T Consensus 147 ~~l-~e~-~~vTgsaDKtIklWk------~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~--------- 208 (745)
T KOG0301|consen 147 ASL-PEN-TYVTGSADKTIKLWK------GGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLD--------- 208 (745)
T ss_pred eec-CCC-cEEeccCcceeeecc------CCchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEecc---------
Confidence 999 444 899999999999999 688999999999999999998764 48999999999999995
Q ss_pred ccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEE
Q 015301 271 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK 350 (409)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 350 (409)
+..+..+.+|. ..++++....++..++++++|++++||+.. ++.+.
T Consensus 209 --------------------------ge~l~~~~ght------n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~ 254 (745)
T KOG0301|consen 209 --------------------------GEVLLEMHGHT------NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQV 254 (745)
T ss_pred --------------------------Cceeeeeeccc------eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEE
Confidence 36788888888 455666777788999999999999999976 78888
Q ss_pred eccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 351 LDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 351 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
+......|+++.+-++|. +++|+.||.|+||.......
T Consensus 255 I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 255 ITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred EecCccceEEEEEeeCCC-EEEeccCceEEEEEeccccc
Confidence 876666899999888876 67788899999999875443
No 82
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=7.4e-31 Score=198.74 Aligned_cols=279 Identities=14% Similarity=0.168 Sum_probs=221.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcc
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~ 119 (409)
...|..+.|+|.+..|++++.||++++|+.... .+.. ...|..++.+++|.+ ...+++|+.||.|+.+|+.++..
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~-~l~~---~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN-SLKL---KFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccch-hhhh---heecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc
Confidence 577999999999999999999999999999877 2222 233556999999987 56788999999999999998875
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcE
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHL 199 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 199 (409)
..... |..++.++.+++....+++|+.|++|++||.+.......+. ....|.++... ++.
T Consensus 88 ~~igt----------------h~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~---g~~ 147 (323)
T KOG1036|consen 88 DQIGT----------------HDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS---GNR 147 (323)
T ss_pred eeecc----------------CCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc---CCE
Confidence 44433 44479999999988889999999999999998755555554 34588888865 788
Q ss_pred EEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccc
Q 015301 200 IFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWD 279 (409)
Q Consensus 200 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 279 (409)
|++|+.|..+.+||+|...... ...-..-+-.+.++++.|++.-+++++-||.|.+=.++..+..+
T Consensus 148 LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~------------ 213 (323)
T KOG1036|consen 148 LVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ------------ 213 (323)
T ss_pred EEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh------------
Confidence 9999999999999998432221 22223345678999999988889999999999887766532111
Q ss_pred cccccccccceeccccCccceeeeecccc---eeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCc
Q 015301 280 YRWMEYPSYARRLKHPHDQSLATYKGHSV---LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNA 356 (409)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 356 (409)
..-..|+.|.. .....-++.+++|+|-...||+|+.||.|.+||+.+.+.+..+.....
T Consensus 214 ------------------skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~ 275 (323)
T KOG1036|consen 214 ------------------SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYET 275 (323)
T ss_pred ------------------hhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCC
Confidence 22334555543 334556677889999999999999999999999999999999987778
Q ss_pred ceeeeEEecCcCeEEeecC
Q 015301 357 PVRDCCWHPIYPMLISSSW 375 (409)
Q Consensus 357 ~v~~~~~s~~~~~l~s~~~ 375 (409)
.|..++|+.+|..||.++.
T Consensus 276 SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 276 SISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceEEEEeccCCCeEEEEec
Confidence 8999999999999999863
No 83
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.2e-31 Score=200.07 Aligned_cols=268 Identities=18% Similarity=0.273 Sum_probs=207.0
Q ss_pred EEEEeCCCcEEEEEcCCC---------eeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccce
Q 015301 55 FVAASQESNIKVYNVDKN---------WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANV 125 (409)
Q Consensus 55 l~t~~~d~~i~vw~~~~~---------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 125 (409)
+++|+....|.=+++.-. ..+...+....|.++|++++.+ +.++|+|+.|.+|+|||+..........
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll- 80 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL- 80 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee-
Confidence 566776666666655422 1234456778899999999986 8999999999999999998765432221
Q ss_pred eceeeeeeeecCCCCcceeeEEEEEcCCCC--eEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEe
Q 015301 126 TEIHKGLDFSADGDEDEFGIFSVKFSTDGQ--ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSG 203 (409)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 203 (409)
.|.+.|+++.|.++.. .|++|+.||.|.+|+....+.+..+++|.+.|+.++.+ |.+++.++.
T Consensus 81 --------------~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiH-PS~KLALsV 145 (362)
T KOG0294|consen 81 --------------SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIH-PSGKLALSV 145 (362)
T ss_pred --------------ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEec-CCCceEEEE
Confidence 3455799999998764 89999999999999999999999999999999999999 899999999
Q ss_pred eCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccc
Q 015301 204 SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWM 283 (409)
Q Consensus 204 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (409)
+.|+.+++||+- .++....+.- ....+.+.|+|.|.+++.++.++ |-+|.+.+......
T Consensus 146 g~D~~lr~WNLV----~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~--------------- 204 (362)
T KOG0294|consen 146 GGDQVLRTWNLV----RGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFRE--------------- 204 (362)
T ss_pred cCCceeeeehhh----cCccceeecc-CCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhh---------------
Confidence 999999999974 4443333321 22234499999999999988775 89998876221111
Q ss_pred cccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEE
Q 015301 284 EYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCW 363 (409)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~ 363 (409)
.... .... ++ .| -++..|++|..|+.|.+||..+..+...+.+|...|-++.+
T Consensus 205 -------------------i~~~---~r~l-~~---~~-l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~ 257 (362)
T KOG0294|consen 205 -------------------IENP---KRIL-CA---TF-LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIAS 257 (362)
T ss_pred -------------------hhcc---ccce-ee---ee-cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEE
Confidence 1100 0011 11 11 25789999999999999999999999999999999999985
Q ss_pred --ecCcCeEEeecCCCeEEEEecCCCc
Q 015301 364 --HPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 364 --s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
.|++.+|+|+|.||.|++||++...
T Consensus 258 ~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 258 YTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred EecCCceEEEEeccCceEEEEEccccc
Confidence 4667799999999999999998753
No 84
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-31 Score=199.32 Aligned_cols=249 Identities=20% Similarity=0.273 Sum_probs=200.3
Q ss_pred cceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--
Q 015301 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-- 162 (409)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-- 162 (409)
...|+++.|+++|..|++++.|..+++||..+++........ ..++..++|......++.++.
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk---------------kyG~~~~~Fth~~~~~i~sStk~ 78 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK---------------KYGVDLACFTHHSNTVIHSSTKE 78 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc---------------cccccEEEEecCCceEEEccCCC
Confidence 447999999999999999999999999999998765444322 235888888877777777776
Q ss_pred cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC
Q 015301 163 DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD 242 (409)
Q Consensus 163 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 242 (409)
|.+|+..++.+.+.++-+.+|...|+.++.+ |.++.+++++.|++|++||+| ..++...+.. ..-..++|.|+
T Consensus 79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~s-P~~d~FlS~S~D~tvrLWDlR----~~~cqg~l~~--~~~pi~AfDp~ 151 (311)
T KOG1446|consen 79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVS-PKDDTFLSSSLDKTVRLWDLR----VKKCQGLLNL--SGRPIAAFDPE 151 (311)
T ss_pred CCceEEEEeecCceEEEcCCCCceEEEEEec-CCCCeEEecccCCeEEeeEec----CCCCceEEec--CCCcceeECCC
Confidence 8899999999999999999999999999999 666999999999999999987 3444433332 23345789999
Q ss_pred CCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeec
Q 015301 243 GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYS 322 (409)
Q Consensus 243 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 322 (409)
|-++|++...+.|++||++.....+ ...+.-.. ........+.||
T Consensus 152 GLifA~~~~~~~IkLyD~Rs~dkgP--------------------------------F~tf~i~~---~~~~ew~~l~FS 196 (311)
T KOG1446|consen 152 GLIFALANGSELIKLYDLRSFDKGP--------------------------------FTTFSITD---NDEAEWTDLEFS 196 (311)
T ss_pred CcEEEEecCCCeEEEEEecccCCCC--------------------------------ceeEccCC---CCccceeeeEEc
Confidence 9999999888899999999854322 22222211 111234466899
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcce---eeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 323 TAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPV---RDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 323 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v---~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
|||++|+.++..+.+++.|.-+|..+.++..+...- ...+|+||++++++|+.||+|.+|+++++.+.
T Consensus 197 ~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 197 PDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred CCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence 999999999999999999999999999988775432 56789999999999999999999999887654
No 85
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=3e-31 Score=229.05 Aligned_cols=257 Identities=19% Similarity=0.201 Sum_probs=190.0
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCe
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNF 165 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~ 165 (409)
.|.....++++..+++++.+.....|+...+... ...........-.+...+|...|.+++|+| ++++|++|+.|+.
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v--~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV--LKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEE--eeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 4555666777777788887888888887554321 111110000000112246788999999999 8889999999999
Q ss_pred EEEEECCCC-------eeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEE
Q 015301 166 IYVYDLQAN-------KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 238 (409)
Q Consensus 166 i~v~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (409)
|++||+.++ +++..+.+|...|.+++|+|..+++|++++.|+.|++||++ .+.....+.+|...|.+++
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~----tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE----RGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC----CCeEEEEEcCCCCceEEEE
Confidence 999999765 34667889999999999995556899999999999999975 6677778888999999999
Q ss_pred EcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEe
Q 015301 239 SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS 318 (409)
Q Consensus 239 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (409)
|+|++.+|++++.|+.|++||+++ +..+..+.+|..... ..
T Consensus 176 ~spdG~lLatgs~Dg~IrIwD~rs----------------------------------g~~v~tl~~H~~~~~-~~---- 216 (493)
T PTZ00421 176 WNLDGSLLCTTSKDKKLNIIDPRD----------------------------------GTIVSSVEAHASAKS-QR---- 216 (493)
T ss_pred EECCCCEEEEecCCCEEEEEECCC----------------------------------CcEEEEEecCCCCcc-eE----
Confidence 999999999999999999999987 334455555543211 11
Q ss_pred eeecCCCCEEEEEe----CCCeEEEEEccCCc-eEEEeccC-CcceeeeEEecCcCeEEeec-CCCeEEEEecCCCc
Q 015301 319 PEYSTAQKYIYTGS----SDNSVYIYDLVSGA-QVAKLDFH-NAPVRDCCWHPIYPMLISSS-WDCNIVRWEIPGIG 388 (409)
Q Consensus 319 ~~~s~~~~~l~~~~----~dg~v~i~d~~~~~-~~~~~~~~-~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~~~~ 388 (409)
..|.+++..+++++ .|+.|++||+++.. ++.....+ ...+....|++++++|++++ .||.|++||+.++.
T Consensus 217 ~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 217 CLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred EEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 23556666666544 47999999998754 44444433 34566678999999998887 59999999998765
No 86
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=100.00 E-value=5e-32 Score=218.26 Aligned_cols=287 Identities=17% Similarity=0.234 Sum_probs=236.3
Q ss_pred eecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeee--eecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD--IETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
...|..-|.++++|...+.+.||+. |.|+|||+......... +.......-|.++...|||+.|++|+.-.++.|||
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 3478899999999999999999986 56999999765322221 11222344799999999999999999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEe
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 193 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~ 193 (409)
+..........+.... ..+++++.+||.+..++++.||.|.|||+.+...++.+++|.+.+.||.++
T Consensus 494 LAapTprikaeltssa-------------paCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis 560 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSA-------------PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 560 (705)
T ss_pred ccCCCcchhhhcCCcc-------------hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec
Confidence 9887654444333221 148889999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccc
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 273 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 273 (409)
++|..|.+|+-|.+|+-||+| .+..+... .....|.++.++|++.++++|-.++.+.+.......
T Consensus 561 -~dGtklWTGGlDntvRcWDlr----egrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~--------- 625 (705)
T KOG0639|consen 561 -KDGTKLWTGGLDNTVRCWDLR----EGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE--------- 625 (705)
T ss_pred -CCCceeecCCCccceeehhhh----hhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCCcc---------
Confidence 999999999999999999987 44443332 245789999999999999999999999888776521
Q ss_pred cccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc
Q 015301 274 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF 353 (409)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 353 (409)
...+..|. .++.++.|++-|+++++.+.|+.+..|...-|..+...+
T Consensus 626 --------------------------kyqlhlhe------ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk- 672 (705)
T KOG0639|consen 626 --------------------------KYQLHLHE------SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK- 672 (705)
T ss_pred --------------------------ceeecccc------cEEEEEEecccCceeeecCchhhhhhccCccccceeecc-
Confidence 12223333 677888999999999999999999999999998888877
Q ss_pred CCcceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 354 HNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 354 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
..+.|.++..|.|.++++||+.|..-.+|.+
T Consensus 673 E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 673 ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 5678999999999999999999988888875
No 87
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-31 Score=219.08 Aligned_cols=276 Identities=16% Similarity=0.221 Sum_probs=221.7
Q ss_pred eEEecCceeEee-ccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeeccccc
Q 015301 7 VNYSGRGRFSAA-DSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALR 85 (409)
Q Consensus 7 ~~~s~dg~~~~~-~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 85 (409)
+.||..+....+ +....+|............-+...|+++.|+++|++||+|..+|.|.|||......+..... .|.
T Consensus 183 ldWss~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~--~h~ 260 (484)
T KOG0305|consen 183 LDWSSANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG--SHA 260 (484)
T ss_pred hhcccCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC--CcC
Confidence 456655544333 44555565544443333344489999999999999999999999999999987755544322 177
Q ss_pred ceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCe
Q 015301 86 WTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF 165 (409)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 165 (409)
..|.+++|. +..+.+|+.++.|..+|++..+.... . ..+|...|..++|++++.++++|+.|+.
T Consensus 261 ~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~-~-------------~~~H~qeVCgLkws~d~~~lASGgnDN~ 324 (484)
T KOG0305|consen 261 SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS-T-------------LQGHRQEVCGLKWSPDGNQLASGGNDNV 324 (484)
T ss_pred ceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-h-------------hhcccceeeeeEECCCCCeeccCCCccc
Confidence 799999998 67899999999999999988765433 1 1356778999999999999999999999
Q ss_pred EEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee--CCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC
Q 015301 166 IYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS--DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG 243 (409)
Q Consensus 166 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 243 (409)
+.|||....+++..+..|.++|.+++|+|....+||+|+ .|+.|++||.. .+..+..+. ....|.++.|++..
T Consensus 325 ~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~----~g~~i~~vd-tgsQVcsL~Wsk~~ 399 (484)
T KOG0305|consen 325 VFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN----TGARIDSVD-TGSQVCSLIWSKKY 399 (484)
T ss_pred eEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC----CCcEecccc-cCCceeeEEEcCCC
Confidence 999999888899999999999999999999999999975 79999999964 666666554 45789999999998
Q ss_pred CeEEEEe--CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeee
Q 015301 244 RYFISNG--KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY 321 (409)
Q Consensus 244 ~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (409)
+.|+++. .++.|.||+..+ -..+..+.+|.. .+..+++
T Consensus 400 kEi~sthG~s~n~i~lw~~ps----------------------------------~~~~~~l~gH~~------RVl~la~ 439 (484)
T KOG0305|consen 400 KELLSTHGYSENQITLWKYPS----------------------------------MKLVAELLGHTS------RVLYLAL 439 (484)
T ss_pred CEEEEecCCCCCcEEEEeccc----------------------------------cceeeeecCCcc------eeEEEEE
Confidence 7777653 467899999987 345677788873 3556789
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCC
Q 015301 322 STAQKYIYTGSSDNSVYIYDLVSG 345 (409)
Q Consensus 322 s~~~~~l~~~~~dg~v~i~d~~~~ 345 (409)
||||..+++|+.|.++++|++-..
T Consensus 440 SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 440 SPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCCEEEEecccCcEEeccccCC
Confidence 999999999999999999998764
No 88
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-32 Score=201.86 Aligned_cols=277 Identities=14% Similarity=0.227 Sum_probs=219.2
Q ss_pred eeEEe---cCceeEeeccceEEEEeeec---CCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 6 EVNYS---GRGRFSAADSCHVLSRYLPV---NGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 6 ~~~~s---~dg~~~~~~~~~~~~~~~~~---~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
-|+|| |||-|+.+.+.+--..+-.. .-.-++.||.+.|+....+.+....|+++.|-+-+|||.-++..+..
T Consensus 19 dl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhs-- 96 (334)
T KOG0278|consen 19 DLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHS-- 96 (334)
T ss_pred EEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhh--
Confidence 35666 58888776554321111111 11137899999999999999999999999999999999988855543
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
..|..-|.+++|+.|.++|++|+.+..+++||++..+...... .+|.+.|..+.|....+.|++
T Consensus 97 --f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~--------------~ghtg~Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 97 --FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEI--------------SGHTGGIRTVLWCHEDKCILS 160 (334)
T ss_pred --hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhh--------------cCCCCcceeEEEeccCceEEe
Confidence 3355589999999999999999999999999998776432221 356778999999999999999
Q ss_pred EEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEE
Q 015301 160 AGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 239 (409)
Q Consensus 160 ~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (409)
.+.|++|++||.+++..++++. ...+|+++.++ +++.+|.++ ..+.|++||.. ....++... -...|.+.++
T Consensus 161 Sadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs-~dG~ilTia-~gssV~Fwdak----sf~~lKs~k-~P~nV~SASL 232 (334)
T KOG0278|consen 161 SADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVS-QDGRILTIA-YGSSVKFWDAK----SFGLLKSYK-MPCNVESASL 232 (334)
T ss_pred eccCCceEEEEeccCcEEEEEe-cCCCCcceeec-cCCCEEEEe-cCceeEEeccc----cccceeecc-Cccccccccc
Confidence 9999999999999999999987 56789999999 888776654 56789999964 555555554 3456888999
Q ss_pred cCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeee-ecccceeeeeEEEEe
Q 015301 240 RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY-KGHSVLRTLIRCYFS 318 (409)
Q Consensus 240 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 318 (409)
+|+...+++|+.|..++.||..+. ..+..+ ++|. ..+.+
T Consensus 233 ~P~k~~fVaGged~~~~kfDy~Tg----------------------------------eEi~~~nkgh~------gpVhc 272 (334)
T KOG0278|consen 233 HPKKEFFVAGGEDFKVYKFDYNTG----------------------------------EEIGSYNKGHF------GPVHC 272 (334)
T ss_pred cCCCceEEecCcceEEEEEeccCC----------------------------------ceeeecccCCC------CceEE
Confidence 999999999999999999999983 334443 5555 45566
Q ss_pred eeecCCCCEEEEEeCCCeEEEEEccCCceE
Q 015301 319 PEYSTAQKYIYTGSSDNSVYIYDLVSGAQV 348 (409)
Q Consensus 319 ~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~ 348 (409)
+.|+|+|...++|++||+|++|....++..
T Consensus 273 VrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 273 VRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred EEECCCCceeeccCCCceEEEEEecCCCch
Confidence 789999999999999999999998766543
No 89
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.5e-31 Score=212.96 Aligned_cols=264 Identities=21% Similarity=0.313 Sum_probs=214.4
Q ss_pred eecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceec---eeeeeeeecCCCCcceeeEEEEEcCCCC
Q 015301 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTE---IHKGLDFSADGDEDEFGIFSVKFSTDGQ 155 (409)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (409)
.....|.-+|.+++++|++++.++++.+++|.-|++.+++......... ......+......|...+.+++.++||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 3455677799999999999999999999999999999887541111110 0011222222247888999999999999
Q ss_pred eEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccccee
Q 015301 156 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 235 (409)
Q Consensus 156 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~ 235 (409)
+|++|+.|..|.||+..+.+.++.+.+|.+.|.+++|- ...+.+++++.|+.+++|++. ....+.++.+|.+.|.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr-~gt~~lys~s~Drsvkvw~~~----~~s~vetlyGHqd~v~ 290 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFR-KGTSELYSASADRSVKVWSID----QLSYVETLYGHQDGVL 290 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeee-cCccceeeeecCCceEEEehh----HhHHHHHHhCCcccee
Confidence 99999999999999999999999999999999999998 888899999999999999964 7778888999999999
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEE
Q 015301 236 FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRC 315 (409)
Q Consensus 236 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (409)
++.....++.+-+|+.|.++++|++.. ..-..+.++.....++..
T Consensus 291 ~IdaL~reR~vtVGgrDrT~rlwKi~e-----------------------------------esqlifrg~~~sidcv~~ 335 (479)
T KOG0299|consen 291 GIDALSRERCVTVGGRDRTVRLWKIPE-----------------------------------ESQLIFRGGEGSIDCVAF 335 (479)
T ss_pred eechhcccceEEeccccceeEEEeccc-----------------------------------cceeeeeCCCCCeeeEEE
Confidence 999888888888888999999999954 233445555433333322
Q ss_pred EEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc-C-----------CcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 316 YFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF-H-----------NAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 316 ~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-~-----------~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
+ +...+++|+.+|.|.+|++...+++.+.+. | ...|++++..|...++++|+.+|+|++|.
T Consensus 336 I-------n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 336 I-------NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK 408 (479)
T ss_pred e-------cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence 2 357899999999999999999998877641 2 22789999999999999999999999999
Q ss_pred cCCCcc
Q 015301 384 IPGIGE 389 (409)
Q Consensus 384 ~~~~~~ 389 (409)
+.++..
T Consensus 409 i~~g~r 414 (479)
T KOG0299|consen 409 IEDGLR 414 (479)
T ss_pred ecCCcc
Confidence 988743
No 90
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.9e-31 Score=210.73 Aligned_cols=293 Identities=12% Similarity=0.174 Sum_probs=232.3
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCc-EEEEEecCCEEEEEEcCCCc
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQR-FLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~~w~~~~~~ 118 (409)
.+.|+++.|+|...+|++++.|++++||.++..... .+....-...+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 478999999999999999999999999999865322 2222222345899999999998 88899999999999999888
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCc
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGH 198 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 198 (409)
......+..... ..+.....++++++|+..+..|.|.+....+++.+..++ -.+.|..++|+ .++.
T Consensus 292 ~~k~~~~~g~e~------------~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fs-Sdsk 357 (514)
T KOG2055|consen 292 VTKLKPPYGVEE------------KSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFS-SDSK 357 (514)
T ss_pred cccccCCCCccc------------chhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEe-cCCc
Confidence 766555443321 247788999999999999999999999999999998887 46889999999 8899
Q ss_pred EEEEeeCCCeEEEecccccccCCceeeeeeccc-cceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccc
Q 015301 199 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL-EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYD 277 (409)
Q Consensus 199 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 277 (409)
.|++++.+|.|.+||++ ...++..+.... -.-++++.++++.+|++|+..|.|.|||.++-....
T Consensus 358 ~l~~~~~~GeV~v~nl~----~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~---------- 423 (514)
T KOG2055|consen 358 ELLASGGTGEVYVWNLR----QNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST---------- 423 (514)
T ss_pred EEEEEcCCceEEEEecC----CcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccC----------
Confidence 99999999999999987 446666554322 123567788999999999999999999977621110
Q ss_pred cccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC--CCeEEEEEccCCceEEEeccC-
Q 015301 278 WDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS--DNSVYIYDLVSGAQVAKLDFH- 354 (409)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--dg~v~i~d~~~~~~~~~~~~~- 354 (409)
..+++..+. .....+.++.|++|.++||.++. ...+++-.+.+......+...
T Consensus 424 ------------------~PkPik~~d------NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n 479 (514)
T KOG2055|consen 424 ------------------NPKPIKTVD------NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSN 479 (514)
T ss_pred ------------------CCCchhhhh------hhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCC
Confidence 112232222 33356778899999999999886 578999998887777666543
Q ss_pred --CcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 355 --NAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 355 --~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
-+.|+|++|||.+.+|+.|..+|.+.+|.+.
T Consensus 480 ~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 480 TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 3468999999999999999999999999874
No 91
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3.5e-30 Score=190.52 Aligned_cols=266 Identities=13% Similarity=0.144 Sum_probs=216.7
Q ss_pred cceeeEEecCceeEeeccce---EEEEeeecCC--CceeecCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeeee
Q 015301 3 VGREVNYSGRGRFSAADSCH---VLSRYLPVNG--PWKVDGMNSRVYTSQFSND-GSFFVAASQESNIKVYNVDKNWKIQ 76 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~---~~~~~~~~~~--~~~l~~h~~~v~~~~~s~~-~~~l~t~~~d~~i~vw~~~~~~~~~ 76 (409)
+.++++|..||..+++++.. .++...+... .....+|.+.|-.++|+|. ..+|++++.|.+|++||...+++..
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~ 101 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTA 101 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEE
Confidence 46789999999999987654 3343333322 2356799999999999874 5689999999999999999987776
Q ss_pred eeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCe
Q 015301 77 KDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQE 156 (409)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (409)
......+ -.-+.|+|+|+++++++.|..|...|.++.+......... .+..++|+.++.+
T Consensus 102 ~i~~~~e----ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~----------------e~ne~~w~~~nd~ 161 (313)
T KOG1407|consen 102 RIETKGE----NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF----------------EVNEISWNNSNDL 161 (313)
T ss_pred EeeccCc----ceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc----------------eeeeeeecCCCCE
Confidence 6544333 3457899999999999999999999998876544433322 4788999988888
Q ss_pred EEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeE
Q 015301 157 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF 236 (409)
Q Consensus 157 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 236 (409)
++.....|.|.|....+-+++..++.|.....|+.|+ |+|++|++|+.|..+.+||+. ...+.+.+..+.-+|..
T Consensus 162 Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~-p~GryfA~GsADAlvSLWD~~----ELiC~R~isRldwpVRT 236 (313)
T KOG1407|consen 162 FFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFD-PDGRYFATGSADALVSLWDVD----ELICERCISRLDWPVRT 236 (313)
T ss_pred EEEecCCceEEEEeccccccccccccCCcceEEEEEC-CCCceEeeccccceeeccChh----HhhhheeeccccCceEE
Confidence 7777778999999999999999999999999999999 999999999999999999965 77788888899999999
Q ss_pred EEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEE
Q 015301 237 IDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCY 316 (409)
Q Consensus 237 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (409)
++|+.+|++|+++++|..|-|=+++++ ..+..+.. ....
T Consensus 237 lSFS~dg~~lASaSEDh~IDIA~vetG----------------------------------d~~~eI~~-------~~~t 275 (313)
T KOG1407|consen 237 LSFSHDGRMLASASEDHFIDIAEVETG----------------------------------DRVWEIPC-------EGPT 275 (313)
T ss_pred EEeccCcceeeccCccceEEeEecccC----------------------------------CeEEEeec-------cCCc
Confidence 999999999999999999999888873 33333222 2345
Q ss_pred EeeeecCCCCEEEEEeCC
Q 015301 317 FSPEYSTAQKYIYTGSSD 334 (409)
Q Consensus 317 ~~~~~s~~~~~l~~~~~d 334 (409)
+.++|.|...+||.++.|
T Consensus 276 ~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 276 FTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eeEEecCCCceeeEEecC
Confidence 677899999999988765
No 92
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=2.1e-31 Score=211.89 Aligned_cols=269 Identities=19% Similarity=0.299 Sum_probs=209.8
Q ss_pred cCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeee-------eeecccccceEEEEEeCCC-CcEEEEEecCCE
Q 015301 38 GMNSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNWKIQK-------DIETKALRWTITDTSLSPD-QRFLVYASICAI 108 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~-------~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~ 108 (409)
.|.+.|+.+.+-|+.. ++|+.+..+.|.|||......... .+.+.+|...-.+++|++. .-.|++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 5889999999988765 567778889999999875432222 2345667766788999985 457889999999
Q ss_pred EEEEEcCCCccc-cccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECC--CCeeeeEEcCCC
Q 015301 109 VNIVDVGSSARE-SLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQ--ANKCSLRIPAHK 184 (409)
Q Consensus 109 i~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~--~~~~~~~~~~~~ 184 (409)
|.+||+...... .... ......+|...|..++|++ +..+|++++.|+.+.|||.+ +.++.....+|.
T Consensus 202 i~lwdi~~~~~~~~~~~---------p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~ 272 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVD---------PKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHS 272 (422)
T ss_pred EEEEeccccccCCcccc---------ceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccC
Confidence 999999866542 1111 1111236777899999999 56678899999999999999 556667778999
Q ss_pred CCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC-CeEEEEeCCCcEEEeeCCCC
Q 015301 185 SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG-RYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 185 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 263 (409)
++|.|++|+|.++.+||+|+.|++|++||+|. -..++..+.+|...|..+.|+|.. ..|++++.|+.+.+||+..-
T Consensus 273 ~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn---L~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 273 AEVNCVAFNPFNEFILATGSADKTVALWDLRN---LNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI 349 (422)
T ss_pred CceeEEEeCCCCCceEEeccCCCcEEEeechh---cccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccc
Confidence 99999999999999999999999999999984 344888899999999999999964 57888999999999998762
Q ss_pred cccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 264 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
...+. +.. ..||
T Consensus 350 g~eq~--------------------------------------------------~ed----------a~dg-------- 361 (422)
T KOG0264|consen 350 GEEQS--------------------------------------------------PED----------AEDG-------- 361 (422)
T ss_pred ccccC--------------------------------------------------hhh----------hccC--------
Confidence 11100 000 0111
Q ss_pred CCceEEEeccCCcceeeeEEecCcC-eEEeecCCCeEEEEecCC
Q 015301 344 SGAQVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 344 ~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~ 386 (409)
..+++..-.||...|.++.|+|... .|+|++.|+.+.||++..
T Consensus 362 ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 362 PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 2355666778999999999999988 778899999999999974
No 93
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=1.1e-29 Score=220.39 Aligned_cols=257 Identities=16% Similarity=0.206 Sum_probs=187.1
Q ss_pred EeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC-CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeec
Q 015301 58 ASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSA 136 (409)
Q Consensus 58 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 136 (409)
|+.++.|++|+...... .....+|...|.+++|+|+ +.+|++|+.|+.|++||+.++..... ...... .
T Consensus 50 GG~~gvI~L~~~~r~~~---v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-~i~~p~------~ 119 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP---VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-EIKDPQ------C 119 (568)
T ss_pred CCceeEEEeeecCCCce---EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-ccccce------E
Confidence 56678899999876532 3345678889999999997 78999999999999999976432100 000000 0
Q ss_pred CCCCcceeeEEEEEcCCCCeE-EEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 137 DGDEDEFGIFSVKFSTDGQEL-VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
...+|...|.+++|+|++..+ ++++.|+.|++||+++++.+..+. |...|.+++|+ +++.+|++++.|+.|++||++
T Consensus 120 ~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slsws-pdG~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 120 ILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWN-IKGNLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred EeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEEC-CCCCEEEEEecCCEEEEEECC
Confidence 112566789999999988764 688899999999999998777775 66789999999 899999999999999999987
Q ss_pred ccccCCceeeeeeccccceeEE-----EEcCCCCeEEEEeCCC----cEEEeeCCCCccccccccccccccccccccccc
Q 015301 216 CFISKGRANGVLMGHLEGITFI-----DSRRDGRYFISNGKDQ----TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYP 286 (409)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (409)
.+..+..+.+|.+.+... .|++++.+|++++.|+ .|++||+++..
T Consensus 198 ----sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~---------------------- 251 (568)
T PTZ00420 198 ----KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT---------------------- 251 (568)
T ss_pred ----CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC----------------------
Confidence 667777888898765432 3468889999988774 79999998632
Q ss_pred ccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce--EEEeccCCcceeeeEEe
Q 015301 287 SYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ--VAKLDFHNAPVRDCCWH 364 (409)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~v~~~~~s 364 (409)
.++..+..+.... .+... ...+++.++++|+.|+.|++|++..+.. +..+. +..++.+++|.
T Consensus 252 -----------~pl~~~~ld~~~~-~L~p~---~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~ 315 (568)
T PTZ00420 252 -----------SALVTMSIDNASA-PLIPH---YDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFL 315 (568)
T ss_pred -----------CceEEEEecCCcc-ceEEe---eeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEc
Confidence 2233222222111 11111 1234688999999999999999977642 22222 56788999999
Q ss_pred cCcC
Q 015301 365 PIYP 368 (409)
Q Consensus 365 ~~~~ 368 (409)
|...
T Consensus 316 Pkr~ 319 (568)
T PTZ00420 316 PKQI 319 (568)
T ss_pred cccc
Confidence 9643
No 94
>KOG4328 consensus WD40 protein [Function unknown]
Probab=100.00 E-value=1.1e-30 Score=207.83 Aligned_cols=309 Identities=14% Similarity=0.191 Sum_probs=233.8
Q ss_pred CceeecCCCCeEEEEECCCC--CEEEEEeCCCcEEEEEcCCCe-eeeeeeecccccceEEEEEeCCC-CcEEEEEecCCE
Q 015301 33 PWKVDGMNSRVYTSQFSNDG--SFFVAASQESNIKVYNVDKNW-KIQKDIETKALRWTITDTSLSPD-QRFLVYASICAI 108 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~--~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~ 108 (409)
..+..-|.++|++++|+|.. +++|+|..-|.|-+||+.+.+ ..........|..+|.++.|+|. ...+++.+.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 34567789999999999965 478899999999999996432 23344456678889999999994 567888999999
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCee-eeEEcCCCCCe
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC-SLRIPAHKSDV 187 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~v 187 (409)
|++-|+++............ ...+..+.|+.+...++.+..=|...+||++++.. ...+..|...|
T Consensus 259 iR~~D~~~~i~e~v~s~~~d-------------~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTD-------------NIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred eeeeeecchhhHHHhhcCcc-------------ceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccc
Confidence 99999998876655554321 12478889998888888888888999999988765 45567789999
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
+.++++|-...+|++++.|++.+|||+|.......+......|...|.+..|||.+-.|++.+.|..|+|||..-....
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~- 404 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK- 404 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc-
Confidence 9999999899999999999999999999654444444556679999999999999888999999999999997411000
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~ 347 (409)
..+...+. |.....-.-..+...|.|+..++++|..-..|-|+|-..++.
T Consensus 405 -----------------------------~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~ 454 (498)
T KOG4328|consen 405 -----------------------------DEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQM 454 (498)
T ss_pred -----------------------------CCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEE
Confidence 01111111 111111111234456888999999999999999999988888
Q ss_pred EEEeccCCc-ceeee-EEecCcCeEEe-ecCCCeEEEEecC
Q 015301 348 VAKLDFHNA-PVRDC-CWHPIYPMLIS-SSWDCNIVRWEIP 385 (409)
Q Consensus 348 ~~~~~~~~~-~v~~~-~~s~~~~~l~s-~~~dg~i~iw~~~ 385 (409)
+..+..... .|.++ .|+|-+..+++ ++..|.|+||--.
T Consensus 455 v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 455 VCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred eeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 888755443 56554 89998884555 4567889988643
No 95
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2.3e-30 Score=223.82 Aligned_cols=260 Identities=22% Similarity=0.278 Sum_probs=209.9
Q ss_pred EEEeeecCCCce-eecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEE
Q 015301 24 LSRYLPVNGPWK-VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVY 102 (409)
Q Consensus 24 ~~~~~~~~~~~~-l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 102 (409)
.+.......... +.||.+.|.+++|..-+.+|++|+.|.++++||..++.+...+ .+|...|.++... ...+++
T Consensus 232 ~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l---~gh~stv~~~~~~--~~~~~s 306 (537)
T KOG0274|consen 232 LWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSL---QGHTSSVRCLTID--PFLLVS 306 (537)
T ss_pred EeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEe---cCCCceEEEEEcc--CceEee
Confidence 334333333344 8899999999999887889999999999999999999777653 4677789888875 457888
Q ss_pred EecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcC
Q 015301 103 ASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA 182 (409)
Q Consensus 103 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 182 (409)
|+.|.+|++|++.++....... +|..+|.++..+ +.++++|+.|+.|.+||+.+++++..+.+
T Consensus 307 gs~D~tVkVW~v~n~~~l~l~~---------------~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~g 369 (537)
T KOG0274|consen 307 GSRDNTVKVWDVTNGACLNLLR---------------GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSG 369 (537)
T ss_pred ccCCceEEEEeccCcceEEEec---------------cccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecC
Confidence 8999999999999776543332 255689999996 78999999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCC-ceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 183 HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG-RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 183 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
|...|.++.+. .. +.+++|+.|++|++||++ .. +++..+.+|..-+..+.+ .+++|++++.|+.|++||..
T Consensus 370 H~~~V~sl~~~-~~-~~~~Sgs~D~~IkvWdl~----~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 370 HTGRVYSLIVD-SE-NRLLSGSLDTTIKVWDLR----TKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAE 441 (537)
T ss_pred CcceEEEEEec-Cc-ceEEeeeeccceEeecCC----chhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecc
Confidence 99999999887 33 899999999999999986 55 899999999998876665 47899999999999999998
Q ss_pred CCcccccccccccccccccccccccccceeccccCccceeeeecc-cceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEE
Q 015301 262 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGH-SVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIY 340 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~ 340 (409)
. +..+..+.+. . ..+...+.. ...+++++.||.+++|
T Consensus 442 ~----------------------------------~~~~~~~~~~~~------~~v~~l~~~--~~~il~s~~~~~~~l~ 479 (537)
T KOG0274|consen 442 E----------------------------------GECLRTLEGRHV------GGVSALALG--KEEILCSSDDGSVKLW 479 (537)
T ss_pred c----------------------------------CceeeeeccCCc------ccEEEeecC--cceEEEEecCCeeEEE
Confidence 8 4455555553 2 112222221 4678999999999999
Q ss_pred EccCCceEEEeccCC
Q 015301 341 DLVSGAQVAKLDFHN 355 (409)
Q Consensus 341 d~~~~~~~~~~~~~~ 355 (409)
|+++++.+..+-.+.
T Consensus 480 dl~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 480 DLRSGTLIRTLLSTD 494 (537)
T ss_pred ecccCchhhhhhhcc
Confidence 999999888774333
No 96
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=2.2e-31 Score=201.88 Aligned_cols=282 Identities=21% Similarity=0.280 Sum_probs=215.7
Q ss_pred ceeeEEecCceeEeeccceEEEEeeecC------C-------------C--ceeecCCCCeEEEEECCCCCEEEEEeCCC
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYLPVN------G-------------P--WKVDGMNSRVYTSQFSNDGSFFVAASQES 62 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~------~-------------~--~~l~~h~~~v~~~~~s~~~~~l~t~~~d~ 62 (409)
.|+.+||+||.++++++.+...+.+... . + .+|-.|.++|+++.|+|....|++|+.|+
T Consensus 115 cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~ 194 (430)
T KOG0640|consen 115 CRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDN 194 (430)
T ss_pred eeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCC
Confidence 5899999999999998877655554432 0 1 36778999999999999999999999999
Q ss_pred cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcc
Q 015301 63 NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDE 142 (409)
Q Consensus 63 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (409)
+|+++|+... ..++.........+|.++.|+|.|.+|++|.....+++||+.+-++-...... .+|.
T Consensus 195 tvKlFDfsK~-saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd------------~qht 261 (430)
T KOG0640|consen 195 TVKLFDFSKT-SAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPD------------DQHT 261 (430)
T ss_pred eEEEEecccH-HHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcc------------cccc
Confidence 9999998764 22222222223448999999999999999999999999999988764443332 3567
Q ss_pred eeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE-cCCC-CCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccC
Q 015301 143 FGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI-PAHK-SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK 220 (409)
Q Consensus 143 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 220 (409)
..|+++.+++.+++.++++.||.|++||--+++++.++ ..|. ..|.+..|. .+++++++.+.|..+++|.+. +
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ft-kn~kyiLsSG~DS~vkLWEi~----t 336 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFT-KNGKYILSSGKDSTVKLWEIS----T 336 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEc-cCCeEEeecCCcceeeeeeec----C
Confidence 78999999999999999999999999999999998887 3454 578888998 999999999999999999964 7
Q ss_pred Cceeeeeeccc-----cceeEEEEcCCCCeEEEEeC-CCcEEEeeCCCCcccccccccccccccccccccccccceeccc
Q 015301 221 GRANGVLMGHL-----EGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 294 (409)
Q Consensus 221 ~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (409)
+..+....+-. .--+...|+....+++.-.+ .+.+.-||.++.....
T Consensus 337 ~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~--------------------------- 389 (430)
T KOG0640|consen 337 GRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVA--------------------------- 389 (430)
T ss_pred CceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhh---------------------------
Confidence 77777766531 11234457777777766544 5689999998833211
Q ss_pred cCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEc
Q 015301 295 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 342 (409)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~ 342 (409)
..-.+|.. .+....-||.+.-+++++.|.++++|--
T Consensus 390 ------l~slgHn~------a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 390 ------LLSLGHNG------AVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ------hcccCCCC------CceEEEeCCCCCceeeecccceeeeeee
Confidence 11123331 1122246778899999999999999964
No 97
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-31 Score=195.29 Aligned_cols=257 Identities=18% Similarity=0.182 Sum_probs=205.7
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC--CCcEEEEEecCCEEEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP--DQRFLVYASICAIVNIV 112 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~~w 112 (409)
.-.+|.+.|..+...--|++|||++.|++|+|+..+.+.....+.++.+|.++|..++|.. .|.+||+++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 3457999999999988999999999999999999998877677788999999999999965 79999999999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC--CCeEEEEEecCeEEEEECCCC-e--eeeEEcCCCCCe
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD--GQELVAAGSDNFIYVYDLQAN-K--CSLRIPAHKSDV 187 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~-~--~~~~~~~~~~~v 187 (409)
.-++++-....... .|...|++++|.|. |-.|++++.||.|.|.+.++. . .......|.-.|
T Consensus 86 ke~~g~w~k~~e~~-------------~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gv 152 (299)
T KOG1332|consen 86 KEENGRWTKAYEHA-------------AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGV 152 (299)
T ss_pred ecCCCchhhhhhhh-------------hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccc
Confidence 99888654333322 45668999999994 668899999999999998654 2 223457899999
Q ss_pred EEEEEeCCC--C-----------cEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC----CeEEEEe
Q 015301 188 NTVCFADET--G-----------HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG----RYFISNG 250 (409)
Q Consensus 188 ~~~~~~~~~--~-----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~ 250 (409)
++++|.|.. + ..|++|+.|..|+||+... ........+.+|.+-|+.++|.|.- .+|++++
T Consensus 153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~--~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDS--DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCC--cchhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 999999642 2 5699999999999999762 2445556689999999999999953 4799999
Q ss_pred CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEE
Q 015301 251 KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT 330 (409)
Q Consensus 251 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 330 (409)
.||++.||..+....... ...+.. ....++.+.||+.|++|++
T Consensus 231 qDg~viIwt~~~e~e~wk----------------------------~tll~~---------f~~~~w~vSWS~sGn~LaV 273 (299)
T KOG1332|consen 231 QDGTVIIWTKDEEYEPWK----------------------------KTLLEE---------FPDVVWRVSWSLSGNILAV 273 (299)
T ss_pred CCCcEEEEEecCccCccc----------------------------cccccc---------CCcceEEEEEeccccEEEE
Confidence 999999998774211110 011111 2255788889999999999
Q ss_pred EeCCCeEEEEEcc
Q 015301 331 GSSDNSVYIYDLV 343 (409)
Q Consensus 331 ~~~dg~v~i~d~~ 343 (409)
++.|+.|.+|.-.
T Consensus 274 s~GdNkvtlwke~ 286 (299)
T KOG1332|consen 274 SGGDNKVTLWKEN 286 (299)
T ss_pred ecCCcEEEEEEeC
Confidence 9999999999753
No 98
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=3.7e-29 Score=181.54 Aligned_cols=270 Identities=20% Similarity=0.292 Sum_probs=201.6
Q ss_pred ccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec
Q 015301 84 LRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD 163 (409)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 163 (409)
....|.+++|+|.|.+.++|+...++++-....-.....................+.|.+.|+|.+|+|+|++|++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 34479999999999999999999999886543211110000000111122333445788899999999999999999999
Q ss_pred CeEEEEECCCCee-----eeEEcCCCCCeEEEEEeC--C-CCcEEEEee-CCCeEEEecccccccCCceeeeeeccccce
Q 015301 164 NFIYVYDLQANKC-----SLRIPAHKSDVNTVCFAD--E-TGHLIFSGS-DDSLCKVWDRRCFISKGRANGVLMGHLEGI 234 (409)
Q Consensus 164 ~~i~v~d~~~~~~-----~~~~~~~~~~v~~~~~~~--~-~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v 234 (409)
..|++.-++...+ -..+..|.+.|..++|.. . .+.+|++++ .|..|++-| ...++....+.+|.+.|
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~td----c~~g~~~~a~sghtghi 186 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITD----CGRGQGFHALSGHTGHI 186 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEee----cCCCCcceeecCCcccE
Confidence 9999987754332 235677999999999972 2 234566544 455666666 45888899999999999
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeE
Q 015301 235 TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIR 314 (409)
Q Consensus 235 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (409)
.++- +-++-++++|+.|.+|++||++-..+....... + |. ......
T Consensus 187 laly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~------------------------------~--~~-~gless 232 (350)
T KOG0641|consen 187 LALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDND------------------------------F--HD-GGLESS 232 (350)
T ss_pred EEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCc------------------------------c--cC-CCcccc
Confidence 8873 345889999999999999999875443322110 0 10 011123
Q ss_pred EEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcccC
Q 015301 315 CYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAP 391 (409)
Q Consensus 315 ~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 391 (409)
.+.+++..|.|++|++|-.|....+||++.+++++.+..|...|.++.|+|...||.+++.|..|++-|+.......
T Consensus 233 avaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~e 309 (350)
T KOG0641|consen 233 AVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHE 309 (350)
T ss_pred eeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhc
Confidence 45667889999999999999999999999999999999999999999999999999999999999999998754433
No 99
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=4e-31 Score=219.34 Aligned_cols=291 Identities=19% Similarity=0.334 Sum_probs=230.2
Q ss_pred cCCCCeE---EEEEC-CCCCEEEEEeCCCcEEEEEcCCCeee---eeeeecccccceEEEEEeCCCCcEEEEEecCCEEE
Q 015301 38 GMNSRVY---TSQFS-NDGSFFVAASQESNIKVYNVDKNWKI---QKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (409)
Q Consensus 38 ~h~~~v~---~~~~s-~~~~~l~t~~~d~~i~vw~~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 110 (409)
.|...|. .+..+ |.+++|+|||.||.|++|+....... .-......|...|+.+....+++.|++++.|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 3444455 44444 46778999999999999998754331 11334566888899999999999999999999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEE-cCCCCeEEEEEecCeEEEEECCCCee--ee--------E
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKF-STDGQELVAAGSDNFIYVYDLQANKC--SL--------R 179 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~--~~--------~ 179 (409)
+|+...+.......+ ..|..-|.|+++ .++...+++|+-|+.|.+||++++.. +. .
T Consensus 99 ~W~~~~~~~~c~sti-------------r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s 165 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTI-------------RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNS 165 (735)
T ss_pred EeecccCcchhHhhh-------------hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccccc
Confidence 999987642111111 245557999999 78889999999999999999997722 22 2
Q ss_pred Ec-CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEe
Q 015301 180 IP-AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLW 258 (409)
Q Consensus 180 ~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 258 (409)
+. ++..+|.+++.+ +.+..|++|+..+.+++||.| ..+.+..+++|...|..+..++||..+++++.||+|++|
T Consensus 166 l~sG~k~siYSLA~N-~t~t~ivsGgtek~lr~wDpr----t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlW 240 (735)
T KOG0308|consen 166 LGSGPKDSIYSLAMN-QTGTIIVSGGTEKDLRLWDPR----TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLW 240 (735)
T ss_pred CCCCCccceeeeecC-CcceEEEecCcccceEEeccc----cccceeeeeccccceEEEEEcCCCCeEeecCCCceEEee
Confidence 23 788899999999 888999999999999999976 788888899999999999999999999999999999999
Q ss_pred eCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEE
Q 015301 259 DIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVY 338 (409)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~ 338 (409)
|+.. .+++.++..|. ..+|++..+|+=..+++|+.||.|+
T Consensus 241 dLgq----------------------------------QrCl~T~~vH~------e~VWaL~~~~sf~~vYsG~rd~~i~ 280 (735)
T KOG0308|consen 241 DLGQ----------------------------------QRCLATYIVHK------EGVWALQSSPSFTHVYSGGRDGNIY 280 (735)
T ss_pred eccc----------------------------------cceeeeEEecc------CceEEEeeCCCcceEEecCCCCcEE
Confidence 9987 56677777777 3467777788889999999999999
Q ss_pred EEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 339 IYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 339 i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
.=|+++......+-....+|..+..+.+.+-+-+++.|+.|+-|....
T Consensus 281 ~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 281 RTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred ecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 999988533222222566788887776555556677899999998754
No 100
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.98 E-value=8.5e-29 Score=199.72 Aligned_cols=363 Identities=16% Similarity=0.227 Sum_probs=244.2
Q ss_pred cceeeEEecCceeEeeccceE-----------EEEeeecCCCceeecCCCCeEEEEECC--CCCEEEEE--eCCCcEEEE
Q 015301 3 VGREVNYSGRGRFSAADSCHV-----------LSRYLPVNGPWKVDGMNSRVYTSQFSN--DGSFFVAA--SQESNIKVY 67 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~-----------~~~~~~~~~~~~l~~h~~~v~~~~~s~--~~~~l~t~--~~d~~i~vw 67 (409)
.+.|++.+||-..++++.... +|+-......+.+......|+|++||+ .|.+|+.. +.+..+.||
T Consensus 106 dikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVW 185 (626)
T KOG2106|consen 106 DIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVW 185 (626)
T ss_pred ceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchh
Confidence 356899999888777644332 233333344455667788899999998 34555544 345678999
Q ss_pred EcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEE
Q 015301 68 NVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFS 147 (409)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (409)
|...+.......... ..|....|+|.+..|++....+.+.+|+.+.+.......+.+... ..-|.|
T Consensus 186 dWqk~~~~~~vk~sn---e~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~e-----------kk~Vl~ 251 (626)
T KOG2106|consen 186 DWQKKAKLGPVKTSN---EVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKRE-----------KKFVLC 251 (626)
T ss_pred hchhhhccCcceecc---ceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeecccccc-----------ceEEEE
Confidence 998775554443333 378999999977767666668999999998876544333322211 135999
Q ss_pred EEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccc-----------
Q 015301 148 VKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRC----------- 216 (409)
Q Consensus 148 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------- 216 (409)
++|.++|. +++|.++|.|.||+..+.+..+....|.+.|.+++.. .++.+| +|+.|..|..||-..
T Consensus 252 v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~l-r~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~ 328 (626)
T KOG2106|consen 252 VTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCML-RDGTLL-SGGKDRKIILWDDNYRKLRETELPEQ 328 (626)
T ss_pred EEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEe-cCccEe-ecCccceEEeccccccccccccCchh
Confidence 99999997 7899999999999998888777777999999999998 777555 599999999999210
Q ss_pred ------c-------------------ccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccc
Q 015301 217 ------F-------------------ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNS 271 (409)
Q Consensus 217 ------~-------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 271 (409)
. .-.........+|......++.+|+...+++++.|+.+++|+-....-......
T Consensus 329 ~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d 408 (626)
T KOG2106|consen 329 FGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIED 408 (626)
T ss_pred cCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecC
Confidence 0 000011122346778888999999999999999999999999333222222222
Q ss_pred ccccccccccc-ccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce-EE
Q 015301 272 RLRDYDWDYRW-MEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ-VA 349 (409)
Q Consensus 272 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~-~~ 349 (409)
+.....+.... ++.......+...+-.....+..|.. ...+..+.|+|+|.+||.|+.|+.|+||.+..... ..
T Consensus 409 ~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d----~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~ 484 (626)
T KOG2106|consen 409 PAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD----NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS 484 (626)
T ss_pred ceeEeeccCcceEEEeeccceEEEEecccceeEEEEec----CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE
Confidence 22222222111 11111111111111111111222221 23345668999999999999999999999876533 22
Q ss_pred Ee-ccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 350 KL-DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 350 ~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
.. +.|..+|+.+.||+|+++|.+-+-|-.|..|....
T Consensus 485 r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~ 522 (626)
T KOG2106|consen 485 RVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE 522 (626)
T ss_pred EeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc
Confidence 22 23448999999999999999999999999994433
No 101
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2.2e-30 Score=221.56 Aligned_cols=204 Identities=16% Similarity=0.272 Sum_probs=168.6
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC-CCcEEEEEecCCEEEEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIVD 113 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w~ 113 (409)
.+.||.+.|..+.||.+ .+|++++.|.+|++|++....++... .|..-|+|++|+| |.+|+++|+-||.++||+
T Consensus 364 ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F----~HndfVTcVaFnPvDDryFiSGSLD~KvRiWs 438 (712)
T KOG0283|consen 364 EFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF----SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWS 438 (712)
T ss_pred hhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE----ecCCeeEEEEecccCCCcEeecccccceEEee
Confidence 56899999999999975 58999999999999999988666543 4666899999999 789999999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc---------CCC
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP---------AHK 184 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---------~~~ 184 (409)
+...+...-....+ -|++++|.|+|++.++|+.+|.+++|+....+...... .|.
T Consensus 439 I~d~~Vv~W~Dl~~----------------lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~ 502 (712)
T KOG0283|consen 439 ISDKKVVDWNDLRD----------------LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK 502 (712)
T ss_pred cCcCeeEeehhhhh----------------hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc
Confidence 98877544333332 49999999999999999999999999998777665432 133
Q ss_pred CCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccc--ceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 185 SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE--GITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 185 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
.|+.+.|.|.+.+.+++.+.|..|+|+|.+ ....+..++++.. .-....|+.||++|++++.|..|++|++..
T Consensus 503 -rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~----~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 503 -RITGLQFFPGDPDEVLVTSNDSRIRIYDGR----DKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred -eeeeeEecCCCCCeEEEecCCCceEEEecc----chhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 799999998777788888999999999975 5666666666543 234567889999999999999999999865
Q ss_pred Cc
Q 015301 263 MS 264 (409)
Q Consensus 263 ~~ 264 (409)
..
T Consensus 578 ~~ 579 (712)
T KOG0283|consen 578 FN 579 (712)
T ss_pred Cc
Confidence 43
No 102
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=6.3e-30 Score=205.26 Aligned_cols=274 Identities=19% Similarity=0.248 Sum_probs=208.9
Q ss_pred ceeeEEecCcee--EeeccceEEEEeeec--CCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 4 GREVNYSGRGRF--SAADSCHVLSRYLPV--NGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 4 ~~~~~~s~dg~~--~~~~~~~~~~~~~~~--~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
+-.++|||..-+ ..+.+.. +..|... ....++.-....|+++.|..||++||+|...|.|+|+|+.+. .+ ..
T Consensus 29 vssl~fsp~~P~d~aVt~S~r-vqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r-~i--LR 104 (487)
T KOG0310|consen 29 VSSLCFSPKHPYDFAVTSSVR-VQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR-VI--LR 104 (487)
T ss_pred ceeEecCCCCCCceEEecccE-EEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH-HH--HH
Confidence 456889996644 3333333 3333222 222357778899999999999999999999999999996542 22 22
Q ss_pred ecccccceEEEEEeCCC-CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeE
Q 015301 80 ETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQEL 157 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l 157 (409)
...+|+.+|..+.|+|+ +..+++|+.|+.+++||+.+... ... ..+|+..|.+.+|+|. +..+
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~~-------------l~~htDYVR~g~~~~~~~hiv 169 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QAE-------------LSGHTDYVRCGDISPANDHIV 169 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EEE-------------ecCCcceeEeeccccCCCeEE
Confidence 45678889999999995 56777888999999999988763 111 1356778999999994 5588
Q ss_pred EEEEecCeEEEEECCCC-eeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeE
Q 015301 158 VAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF 236 (409)
Q Consensus 158 ~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 236 (409)
++|+.||.|++||.++. ..+.++. |..+|..+.+. |.+.++++++. ..|++||+. ..++.+.....|...|+|
T Consensus 170 vtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~l-psgs~iasAgG-n~vkVWDl~---~G~qll~~~~~H~KtVTc 243 (487)
T KOG0310|consen 170 VTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLAL-PSGSLIASAGG-NSVKVWDLT---TGGQLLTSMFNHNKTVTC 243 (487)
T ss_pred EecCCCceEEEEEeccCCceeEEec-CCCceeeEEEc-CCCCEEEEcCC-CeEEEEEec---CCceehhhhhcccceEEE
Confidence 99999999999999877 5566665 99999999999 78888888764 579999973 344555555559999999
Q ss_pred EEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEE
Q 015301 237 IDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCY 316 (409)
Q Consensus 237 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (409)
+.+..++..|++++-|+.+++||+.+. +.+..+.- ...+
T Consensus 244 L~l~s~~~rLlS~sLD~~VKVfd~t~~----------------------------------Kvv~s~~~-------~~pv 282 (487)
T KOG0310|consen 244 LRLASDSTRLLSGSLDRHVKVFDTTNY----------------------------------KVVHSWKY-------PGPV 282 (487)
T ss_pred EEeecCCceEeecccccceEEEEccce----------------------------------EEEEeeec-------ccce
Confidence 999999999999999999999997762 22222222 2456
Q ss_pred EeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 317 FSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 317 ~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
.+++.+|+++.++.|..||.+.+-+..
T Consensus 283 Lsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 283 LSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred eeEEecCCCceEEEecccceeeeehhh
Confidence 677899999999999999988876443
No 103
>PTZ00420 coronin; Provisional
Probab=99.98 E-value=7.6e-29 Score=215.12 Aligned_cols=230 Identities=12% Similarity=0.163 Sum_probs=171.6
Q ss_pred EecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCe------
Q 015301 103 ASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANK------ 175 (409)
Q Consensus 103 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~------ 175 (409)
|+.++.+++|+...... .. ...+|..+|.+++|+|+ +.+|++|+.|+.|++||+.++.
T Consensus 50 GG~~gvI~L~~~~r~~~--v~-------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i 114 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP--VI-------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI 114 (568)
T ss_pred CCceeEEEeeecCCCce--EE-------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc
Confidence 55677888888754321 11 11256778999999996 7899999999999999997642
Q ss_pred --eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC
Q 015301 176 --CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ 253 (409)
Q Consensus 176 --~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 253 (409)
++..+.+|...|.+++|+|....+|++++.|+.|++||++ .+.....+. |...|.+++|+|+|.+|++++.|+
T Consensus 115 ~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~----tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~ 189 (568)
T PTZ00420 115 KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE----NEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGK 189 (568)
T ss_pred ccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC----CCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCC
Confidence 3346788999999999994344456799999999999986 444444444 567899999999999999999999
Q ss_pred cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC
Q 015301 254 TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS 333 (409)
Q Consensus 254 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 333 (409)
.|++||+++ +..+..+.+|...... ..++...|++++.+|++++.
T Consensus 190 ~IrIwD~Rs----------------------------------g~~i~tl~gH~g~~~s-~~v~~~~fs~d~~~IlTtG~ 234 (568)
T PTZ00420 190 HMHIIDPRK----------------------------------QEIASSFHIHDGGKNT-KNIWIDGLGGDDNYILSTGF 234 (568)
T ss_pred EEEEEECCC----------------------------------CcEEEEEecccCCcee-EEEEeeeEcCCCCEEEEEEc
Confidence 999999998 3445666777643222 33444567788999999887
Q ss_pred CC----eEEEEEccC-CceEEEecc--CCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 334 DN----SVYIYDLVS-GAQVAKLDF--HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 334 dg----~v~i~d~~~-~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
|+ .|+|||+++ .+++..+.. +.+.+......+++.++++|+.|+.|++|++..+
T Consensus 235 d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 235 SKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 64 799999985 566665542 2333333334455788999999999999999765
No 104
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=2.2e-29 Score=186.91 Aligned_cols=295 Identities=16% Similarity=0.186 Sum_probs=212.9
Q ss_pred eeeEEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 5 REVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
..+.|..+|.++.+..-+ .+|.-......-++.||++.|+|++.+-+.+.++||+.|.++++||+++++++.... .
T Consensus 14 TqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~ 92 (327)
T KOG0643|consen 14 TQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-T 92 (327)
T ss_pred ceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-c
Confidence 357888899876664433 455555555556899999999999999999999999999999999999997766532 2
Q ss_pred ccccceEEEEEeCCCCcEEEEEe-----cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCe
Q 015301 82 KALRWTITDTSLSPDQRFLVYAS-----ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQE 156 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (409)
..+|..+.|+++|++++.+. ..+.|.++|++.........- +...+ ..+...++.+-|.|-++.
T Consensus 93 ---~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e--p~~kI------~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 93 ---NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEE--PYLKI------PTPDSKITSALWGPLGET 161 (327)
T ss_pred ---CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccC--ceEEe------cCCccceeeeeecccCCE
Confidence 33799999999999888775 456899999985442111100 00000 012246899999999999
Q ss_pred EEEEEecCeEEEEECCCCe-eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccccee
Q 015301 157 LVAAGSDNFIYVYDLQANK-CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 235 (409)
Q Consensus 157 l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~ 235 (409)
|++|..||.|.+||+++++ .+...+.|...|+.|.++ ++..++++++.|.+-++||.+ ....++.+. ...+|+
T Consensus 162 ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s-~d~T~FiT~s~Dttakl~D~~----tl~v~Kty~-te~PvN 235 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFS-RDRTYFITGSKDTTAKLVDVR----TLEVLKTYT-TERPVN 235 (327)
T ss_pred EEEecCCCcEEEEEcccCceeeechhhhcccccccccc-CCcceEEecccCccceeeecc----ceeeEEEee-eccccc
Confidence 9999999999999999984 455567899999999999 999999999999999999975 556666654 467899
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEeeCCCCccccc-ccccccccccccccccccccceeccccCccceeeeecccceeeeeE
Q 015301 236 FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTT-DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIR 314 (409)
Q Consensus 236 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (409)
+.+++|....++.|+..... |+.+...... .+ .+.+...-...+..+++|- .
T Consensus 236 ~aaisP~~d~VilgGGqeA~---dVTTT~~r~GKFE------------------ArFyh~i~eEEigrvkGHF------G 288 (327)
T KOG0643|consen 236 TAAISPLLDHVILGGGQEAM---DVTTTSTRAGKFE------------------ARFYHLIFEEEIGRVKGHF------G 288 (327)
T ss_pred ceecccccceEEecCCceee---eeeeecccccchh------------------hhHHHHHHHHHhccccccc------c
Confidence 99999987777776543221 2221100000 00 0000001123344556665 5
Q ss_pred EEEeeeecCCCCEEEEEeCCCeEEEEEccC
Q 015301 315 CYFSPEYSTAQKYIYTGSSDNSVYIYDLVS 344 (409)
Q Consensus 315 ~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~ 344 (409)
.+.+++|+|+|+..++|++||.|++.-...
T Consensus 289 PINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 289 PINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CcceeEECCCCcccccCCCCceEEEEEecc
Confidence 567789999999999999999999986543
No 105
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=1.5e-29 Score=200.25 Aligned_cols=274 Identities=18% Similarity=0.253 Sum_probs=210.6
Q ss_pred ecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccc
Q 015301 10 SGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRW 86 (409)
Q Consensus 10 s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 86 (409)
+|...+..+++.+ ++.+....+....+.||...|+.+.|+|+...+++++.|..|+||........ .....|..
T Consensus 228 ~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~---~~~~~h~~ 304 (506)
T KOG0289|consen 228 IPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP---TSSRPHEE 304 (506)
T ss_pred cCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc---cccccccc
Confidence 3433455665555 23333333444588999999999999999999999999999999998776432 33556778
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeE
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 166 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 166 (409)
+|+.+..+|.|.||++++.|+...+.|+.++......... ...-.+++.+|+|||..|.+|..|+.|
T Consensus 305 ~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-------------~s~v~~ts~~fHpDgLifgtgt~d~~v 371 (506)
T KOG0289|consen 305 PVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-------------TSDVEYTSAAFHPDGLIFGTGTPDGVV 371 (506)
T ss_pred cceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-------------cccceeEEeeEcCCceEEeccCCCceE
Confidence 9999999999999999999999999999988764333321 112258999999999999999999999
Q ss_pred EEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec-cccceeEEEEcCCCCe
Q 015301 167 YVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG-HLEGITFIDSRRDGRY 245 (409)
Q Consensus 167 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 245 (409)
++||+.++..+..+++|+++|..++|+ .+|.+|++++.|+.|++||+|. .+....+.- ....+.++.|.+.|.+
T Consensus 372 kiwdlks~~~~a~Fpght~~vk~i~Fs-ENGY~Lat~add~~V~lwDLRK----l~n~kt~~l~~~~~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 372 KIWDLKSQTNVAKFPGHTGPVKAISFS-ENGYWLATAADDGSVKLWDLRK----LKNFKTIQLDEKKEVNSLSFDQSGTY 446 (506)
T ss_pred EEEEcCCccccccCCCCCCceeEEEec-cCceEEEEEecCCeEEEEEehh----hcccceeeccccccceeEEEcCCCCe
Confidence 999999999999999999999999999 9999999999999999999983 333333322 2337999999999999
Q ss_pred EEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCC
Q 015301 246 FISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ 325 (409)
Q Consensus 246 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 325 (409)
|+.++.|=.|++++-.+.. ...+..+..|. .....+.|....
T Consensus 447 L~~~g~~l~Vy~~~k~~k~--------------------------------W~~~~~~~~~s------g~st~v~Fg~~a 488 (506)
T KOG0289|consen 447 LGIAGSDLQVYICKKKTKS--------------------------------WTEIKELADHS------GLSTGVRFGEHA 488 (506)
T ss_pred EEeecceeEEEEEeccccc--------------------------------ceeeehhhhcc------cccceeeecccc
Confidence 9999877666666533311 23333444443 122334577778
Q ss_pred CEEEEEeCCCeEEEEEc
Q 015301 326 KYIYTGSSDNSVYIYDL 342 (409)
Q Consensus 326 ~~l~~~~~dg~v~i~d~ 342 (409)
+++++++.|..++++.+
T Consensus 489 q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 489 QYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEeeccchhheEEeec
Confidence 89999999999888764
No 106
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=1e-28 Score=210.81 Aligned_cols=316 Identities=17% Similarity=0.198 Sum_probs=251.3
Q ss_pred ccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCc
Q 015301 19 DSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQR 98 (409)
Q Consensus 19 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 98 (409)
.+...++.....+..+++.++...|+++.=+|-=+.+|.|..+|+|.++++..++.+...... .++|++++|..||+
T Consensus 181 ~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d---~g~VtslSFrtDG~ 257 (910)
T KOG1539|consen 181 QGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD---WGRVTSLSFRTDGN 257 (910)
T ss_pred CCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcc---ccceeEEEeccCCC
Confidence 334456677777777899999999999999999999999999999999999998666554332 35899999999987
Q ss_pred EE-EEEecCCEEEEEEcCCCccccccceec--eeee---------------------eeee-cCC---------------
Q 015301 99 FL-VYASICAIVNIVDVGSSARESLANVTE--IHKG---------------------LDFS-ADG--------------- 138 (409)
Q Consensus 99 ~l-~~~~~dg~i~~w~~~~~~~~~~~~~~~--~~~~---------------------~~~~-~~~--------------- 138 (409)
.+ ++|+..|.+.+||++..+......... .... ..|. .++
T Consensus 258 p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp 337 (910)
T KOG1539|consen 258 PLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPP 337 (910)
T ss_pred eeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCc
Confidence 54 566677999999998765432211000 0000 0000 000
Q ss_pred ---------C----------------------------------------------------------------------
Q 015301 139 ---------D---------------------------------------------------------------------- 139 (409)
Q Consensus 139 ---------~---------------------------------------------------------------------- 139 (409)
.
T Consensus 338 ~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~ 417 (910)
T KOG1539|consen 338 SCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITA 417 (910)
T ss_pred hheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEE
Confidence 0
Q ss_pred ----------------------Cc------ceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE---cCCCCCeE
Q 015301 140 ----------------------ED------EFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI---PAHKSDVN 188 (409)
Q Consensus 140 ----------------------~~------~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~v~ 188 (409)
.+ ...+++++.++-|++.+.|...|.|-+|++++|-...++ +.|..+|+
T Consensus 418 h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~ 497 (910)
T KOG1539|consen 418 HKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVT 497 (910)
T ss_pred ecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCcee
Confidence 12 256889999999999999999999999999999888888 58999999
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccc
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTT 268 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 268 (409)
.++.. .-++.+++++.+|.+++||.. .......+. -...+..+.++.....++.+..|-.|+++|+.+
T Consensus 498 gla~D-~~n~~~vsa~~~Gilkfw~f~----~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t------ 565 (910)
T KOG1539|consen 498 GLAVD-GTNRLLVSAGADGILKFWDFK----KKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVT------ 565 (910)
T ss_pred EEEec-CCCceEEEccCcceEEEEecC----Ccceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchh------
Confidence 99998 788899999999999999964 444444443 345678888888888899999999999999987
Q ss_pred ccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceE
Q 015301 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV 348 (409)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~ 348 (409)
.+.++.|.+|. .-+.+.+|||||++|++++.|++|++||+.++.++
T Consensus 566 ----------------------------~kvvR~f~gh~------nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 566 ----------------------------RKVVREFWGHG------NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred ----------------------------hhhhHHhhccc------cceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence 45677888887 34567789999999999999999999999999999
Q ss_pred EEeccCCcceeeeEEecCcCeEEeecCC-CeEEEEec
Q 015301 349 AKLDFHNAPVRDCCWHPIYPMLISSSWD-CNIVRWEI 384 (409)
Q Consensus 349 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g~i~iw~~ 384 (409)
-.+. -..+++.+.|+|+|.+|||+..| .-|++|.=
T Consensus 612 D~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 612 DGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred eeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 8886 57789999999999999999988 67999954
No 107
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.1e-28 Score=201.50 Aligned_cols=247 Identities=15% Similarity=0.173 Sum_probs=193.5
Q ss_pred ceeeEEecCceeEee-cc-ceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 4 GREVNYSGRGRFSAA-DS-CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~-~~-~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
++.|+|++.+|+... .+ ...-|++...+....+....+.|++++.+|.++.++.|+.||.+..++...+ .+.....+
T Consensus 72 IE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~-~I~~~r~l 150 (691)
T KOG2048|consen 72 IESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD-KITYKRSL 150 (691)
T ss_pred eeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc-eEEEEeec
Confidence 578999988875444 33 3445667777777788889999999999999999999999998888887776 33333444
Q ss_pred ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE
Q 015301 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (409)
...++.|.+++|+|++..|+.|+.||.|++||+..+......... ..........-|+++.|..++ .|++|.
T Consensus 151 ~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~-------~d~l~k~~~~iVWSv~~Lrd~-tI~sgD 222 (691)
T KOG2048|consen 151 MRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQ-------LDRLSKREPTIVWSVLFLRDS-TIASGD 222 (691)
T ss_pred ccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeec-------ccccccCCceEEEEEEEeecC-cEEEec
Confidence 455679999999999999999999999999999988754421111 111112233458899988666 689999
Q ss_pred ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC
Q 015301 162 SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR 241 (409)
Q Consensus 162 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 241 (409)
..|+|.+||...+.+++.+..|.+.|.+++.. ++++.+++++.|+.|..|.................|...|.+++..+
T Consensus 223 S~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~-~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 223 SAGTVTFWDSIFGTLIQSHSCHDADVLALAVA-DNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE 301 (691)
T ss_pred CCceEEEEcccCcchhhhhhhhhcceeEEEEc-CCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec
Confidence 99999999999999999999999999999999 88899999999999998886422121224444567888999999986
Q ss_pred CCCeEEEEeCCCcEEEeeCCC
Q 015301 242 DGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 242 ~~~~l~~~~~dg~i~iwd~~~ 262 (409)
+ .+++|+.|..+.+-..+.
T Consensus 302 ~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 302 N--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred c--eEEecceeeEEEEccccc
Confidence 6 899999999988877655
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.6e-30 Score=213.08 Aligned_cols=243 Identities=16% Similarity=0.260 Sum_probs=203.3
Q ss_pred cCceeEeeccceEEEEeeecC---------CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 11 GRGRFSAADSCHVLSRYLPVN---------GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 11 ~dg~~~~~~~~~~~~~~~~~~---------~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
|.++|+.+++.+...+.+... ....++.|.+.|+.++...+|+.|+++|.|-+|++|+...+. .......
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~c~sti 113 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TFCMSTI 113 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-chhHhhh
Confidence 567888887776544433321 135788999999999999999999999999999999998763 2233345
Q ss_pred ccccceEEEEEe-CCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE
Q 015301 82 KALRWTITDTSL-SPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160 (409)
Q Consensus 82 ~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (409)
..|..-|.|+++ .++...+|+|+.|+.|.+||+.++.......... ........++..+|++++.++.|..|++|
T Consensus 114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~----~t~~sl~sG~k~siYSLA~N~t~t~ivsG 189 (735)
T KOG0308|consen 114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN----VTVNSLGSGPKDSIYSLAMNQTGTIIVSG 189 (735)
T ss_pred hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc----cccccCCCCCccceeeeecCCcceEEEec
Confidence 678889999999 8889999999999999999999874422222111 11112222667789999999999999999
Q ss_pred EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEc
Q 015301 161 GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (409)
+..+.+++||.++.+.+..+++|+..|.++..+ .+|..+++++.||+|++||++ ..+++.++..|...|+++..+
T Consensus 190 gtek~lr~wDprt~~kimkLrGHTdNVr~ll~~-dDGt~~ls~sSDgtIrlWdLg----qQrCl~T~~vH~e~VWaL~~~ 264 (735)
T KOG0308|consen 190 GTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVN-DDGTRLLSASSDGTIRLWDLG----QQRCLATYIVHKEGVWALQSS 264 (735)
T ss_pred CcccceEEeccccccceeeeeccccceEEEEEc-CCCCeEeecCCCceEEeeecc----ccceeeeEEeccCceEEEeeC
Confidence 999999999999999999999999999999999 999999999999999999976 888999999999999999999
Q ss_pred CCCCeEEEEeCCCcEEEeeCCCC
Q 015301 241 RDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 241 ~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
|+-..+.+|+.||.|..=|+++.
T Consensus 265 ~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 265 PSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred CCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999985
No 109
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=6.9e-29 Score=207.57 Aligned_cols=346 Identities=13% Similarity=0.178 Sum_probs=243.4
Q ss_pred eEEecCceeEeeccceEEEEeeecCC------CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC-CCeeeeeee
Q 015301 7 VNYSGRGRFSAADSCHVLSRYLPVNG------PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVD-KNWKIQKDI 79 (409)
Q Consensus 7 ~~~s~dg~~~~~~~~~~~~~~~~~~~------~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~-~~~~~~~~~ 79 (409)
.-|+|++.++.+.+...-+..+..+. ...+.||.+.|..++|+|.|.+|++.|.|.+-+++-.- .........
T Consensus 322 ~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEia 401 (764)
T KOG1063|consen 322 GLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIA 401 (764)
T ss_pred EEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeec
Confidence 45788887766655443333333222 23567999999999999999999999999999998754 222344455
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccccc-----------------cee------------ceee
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLA-----------------NVT------------EIHK 130 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~-----------------~~~------------~~~~ 130 (409)
..+-|...++|++|-+....+++|.....+|+|+....-..... ..+ ....
T Consensus 402 RPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~ 481 (764)
T KOG1063|consen 402 RPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNT 481 (764)
T ss_pred ccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccc
Confidence 55667778999999987778888999999999987531100000 000 0000
Q ss_pred eee----eec------------CC----------------CCcceeeEEEEEcCCCCeEEEEEec-----CeEEEEECCC
Q 015301 131 GLD----FSA------------DG----------------DEDEFGIFSVKFSTDGQELVAAGSD-----NFIYVYDLQA 173 (409)
Q Consensus 131 ~~~----~~~------------~~----------------~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~ 173 (409)
+.. +.. .. -+|...|++++.+|+++++++++.. ..|++|+..+
T Consensus 482 G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~ 561 (764)
T KOG1063|consen 482 GGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN 561 (764)
T ss_pred ccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc
Confidence 000 000 00 0799999999999999999998763 5799999999
Q ss_pred CeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC
Q 015301 174 NKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ 253 (409)
Q Consensus 174 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 253 (409)
...++.+.+|.-.|+.++|+ |++++|++.+.|.++.+|...............+.|..-|..+.|+|++.++++++.|+
T Consensus 562 W~~~~~L~~HsLTVT~l~FS-pdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK 640 (764)
T KOG1063|consen 562 WLQVQELEGHSLTVTRLAFS-PDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDK 640 (764)
T ss_pred hhhhheecccceEEEEEEEC-CCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCc
Confidence 98889999999999999999 99999999999999999996432222223344778999999999999999999999999
Q ss_pred cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCC-CCEEEEEe
Q 015301 254 TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA-QKYIYTGS 332 (409)
Q Consensus 254 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~ 332 (409)
.|++|....... +.+..+........+....+.+.+.++ +..+++|-
T Consensus 641 ~VkVW~~~~~~d--------------------------------~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGl 688 (764)
T KOG1063|consen 641 KVKVWEEPDLRD--------------------------------KYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGL 688 (764)
T ss_pred eEEEEeccCchh--------------------------------hhhhhhchhccCCceeeEEeeccccccccceEEEEe
Confidence 999999877421 111111111111222223333333333 34788999
Q ss_pred CCCeEEEEEccCC-------c-----eEEEeccCCcceeeeEEecCc--------C--eEEeecCCCeEEEEecC
Q 015301 333 SDNSVYIYDLVSG-------A-----QVAKLDFHNAPVRDCCWHPIY--------P--MLISSSWDCNIVRWEIP 385 (409)
Q Consensus 333 ~dg~v~i~d~~~~-------~-----~~~~~~~~~~~v~~~~~s~~~--------~--~l~s~~~dg~i~iw~~~ 385 (409)
+.|.|.+|....- . .+....+|...|+.+.|.|.. . .|++|+.|..++++++.
T Consensus 689 e~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 689 EKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 9999999996511 1 111223577899999999762 2 57999999999999874
No 110
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=2.7e-29 Score=220.62 Aligned_cols=262 Identities=19% Similarity=0.222 Sum_probs=205.7
Q ss_pred ccceEEEEEeCCCCcEEEEEe--cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE
Q 015301 84 LRWTITDTSLSPDQRFLVYAS--ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~--~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (409)
+...|.++..+|++..+++|+ .|+.+++|+.+.-...........+. ....-..|.+.|.|+.|+|||++||+|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k---~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPK---HLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccch---hheeeccccCceeEEEECCCCCeEeecc
Confidence 344699999999999999999 89999999876422111110000000 1111235777999999999999999999
Q ss_pred ecCeEEEEECCC------------------CeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCce
Q 015301 162 SDNFIYVYDLQA------------------NKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRA 223 (409)
Q Consensus 162 ~d~~i~v~d~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 223 (409)
+|+.|.||+... .+.+..+.+|...|..++|+ |++.+|++++.|++|.+|+.+ +...
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws-p~~~~lvS~s~DnsViiwn~~----tF~~ 163 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS-PDDSLLVSVSLDNSVIIWNAK----TFEL 163 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC-CCccEEEEecccceEEEEccc----ccee
Confidence 999999999762 13456788999999999999 799999999999999999975 6688
Q ss_pred eeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeee
Q 015301 224 NGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY 303 (409)
Q Consensus 224 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (409)
+..+.+|.+.|..+.|.|-|++|++-+.|++|++|++.+.. ..+.+
T Consensus 164 ~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~----------------------------------i~k~I 209 (942)
T KOG0973|consen 164 LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG----------------------------------IEKSI 209 (942)
T ss_pred eeeeecccccccceEECCccCeeeeecCCceEEEEEcccce----------------------------------eeEee
Confidence 99999999999999999999999999999999999977632 22333
Q ss_pred ecccceeeeeEEEEeeeecCCCCEEEEEeC----CCeEEEEEccCCceEEEeccCCcceeeeEEecC-----cC------
Q 015301 304 KGHSVLRTLIRCYFSPEYSTAQKYIYTGSS----DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPI-----YP------ 368 (409)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~----dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~-----~~------ 368 (409)
.++............+.|||||++|++... -..+.|.+-.+.+.-..+-+|.+++.++.|+|. .+
T Consensus 210 t~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~ 289 (942)
T KOG0973|consen 210 TKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQ 289 (942)
T ss_pred ccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccC
Confidence 333222233345567789999999998743 346889888888888899999999999999982 11
Q ss_pred ------eEEeecCCCeEEEEecCCC
Q 015301 369 ------MLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 369 ------~l~s~~~dg~i~iw~~~~~ 387 (409)
.+|+|+.|++|.||.....
T Consensus 290 ~~~~y~i~AvgSqDrSlSVW~T~~~ 314 (942)
T KOG0973|consen 290 PNCYYCIAAVGSQDRSLSVWNTALP 314 (942)
T ss_pred CCcceEEEEEecCCccEEEEecCCC
Confidence 6788999999999998543
No 111
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.7e-30 Score=216.20 Aligned_cols=293 Identities=19% Similarity=0.279 Sum_probs=218.9
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeee-ee---cccccceEEEEEeCC-CCcEEEEEecCCEEEEEEcC
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD-IE---TKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVG 115 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~-~~---~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w~~~ 115 (409)
....+|...++-..++.++. ..++||.+......... .. .......+..+.|.. +.++||+++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 44566777788888888875 46888887654221111 11 111122466778875 47899999999999999998
Q ss_pred CCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeC
Q 015301 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 194 (409)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~ 194 (409)
........... ..|...++++.|++ ...+|++|+.||.|++||++..+...++.+....|.+++|+|
T Consensus 119 k~~rnk~l~~f------------~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp 186 (839)
T KOG0269|consen 119 KSIRNKLLTVF------------NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP 186 (839)
T ss_pred ccccchhhhHh------------hhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc
Confidence 74322222222 24566899999998 556889999999999999999998888988899999999999
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccc
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLR 274 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 274 (409)
..++.|+++...|.+++||+| ....+...+.+|.++|.++.|+|++.+||+|+.|+.|+|||+.+...
T Consensus 187 ~~~~~F~s~~dsG~lqlWDlR---qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~--------- 254 (839)
T KOG0269|consen 187 GYGNKFASIHDSGYLQLWDLR---QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA--------- 254 (839)
T ss_pred CCCceEEEecCCceEEEeecc---CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc---------
Confidence 999999999999999999998 46677788899999999999999999999999999999999986321
Q ss_pred ccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC--CCeEEEEEccCC-ceEEEe
Q 015301 275 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS--DNSVYIYDLVSG-AQVAKL 351 (409)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--dg~v~i~d~~~~-~~~~~~ 351 (409)
....++... ..+.+..|.|+. ...||+++. |-.|+|||++.. -+..++
T Consensus 255 -----------------------~~~~tInTi---apv~rVkWRP~~---~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~ 305 (839)
T KOG0269|consen 255 -----------------------KPKHTINTI---APVGRVKWRPAR---SYHLATCSMVVDTSVHVWDVRRPYIPYATF 305 (839)
T ss_pred -----------------------cceeEEeec---ceeeeeeeccCc---cchhhhhhccccceEEEEeeccccccceee
Confidence 111111111 122233344442 245666654 788999999765 456788
Q ss_pred ccCCcceeeeEEec-CcCeEEeecCCCeEEEEecCCC
Q 015301 352 DFHNAPVRDCCWHP-IYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 352 ~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
..|...++.++|.. |...|.+++.||.|..-.+.+.
T Consensus 306 ~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 306 LEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 88999999999965 3448999999999887666544
No 112
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2e-28 Score=211.24 Aligned_cols=280 Identities=13% Similarity=0.175 Sum_probs=217.5
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCC
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGS 116 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~ 116 (409)
.+|+..-+.++|.|+|.++.+++.||.|++|+............. +...|.+++.. +.+|++++.+++|.+|.+.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~--~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI--SGELVSSIACY--SNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc--cCceeEEEeec--ccceEEeeccceEEEeeCCC
Confidence 478999999999999999999999999999998766332222221 33467777654 55899999999999999998
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCC
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADET 196 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 196 (409)
++......... .++.+++++-+|++++.|+.|-.|++.++........+.+|.++|.++.|+ |+
T Consensus 86 ~~~~~iL~Rft---------------lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~-p~ 149 (933)
T KOG1274|consen 86 GEEDTILARFT---------------LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD-PK 149 (933)
T ss_pred CCccceeeeee---------------ccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc-CC
Confidence 87653333221 269999999999999999999999999999999999999999999999999 89
Q ss_pred CcEEEEeeCCCeEEEecccccccCCceeeeeec--------cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccc
Q 015301 197 GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG--------HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTT 268 (409)
Q Consensus 197 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 268 (409)
+++||+.+.||.|++||+. .+.....+.+ ....+..++|+|++..++..+.|+.|++|+.....
T Consensus 150 ~~fLAvss~dG~v~iw~~~----~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we---- 221 (933)
T KOG1274|consen 150 GNFLAVSSCDGKVQIWDLQ----DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE---- 221 (933)
T ss_pred CCEEEEEecCceEEEEEcc----cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce----
Confidence 9999999999999999975 4443333322 13456788999999899999999999999988733
Q ss_pred ccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceE
Q 015301 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV 348 (409)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~ 348 (409)
....+....... .+...+|||+|+|||+++.||.|.|||+++-+.
T Consensus 222 ------------------------------~~f~Lr~~~~ss----~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~- 266 (933)
T KOG1274|consen 222 ------------------------------LQFKLRDKLSSS----KFSDLQWSPNGKYIAASTLDGQILVWNVDTHER- 266 (933)
T ss_pred ------------------------------eheeeccccccc----ceEEEEEcCCCcEEeeeccCCcEEEEecccchh-
Confidence 223333322111 134557999999999999999999999988322
Q ss_pred EEeccCCcceeeeEEecCcCeEEeecCCCeEEEE
Q 015301 349 AKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 382 (409)
Q Consensus 349 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 382 (409)
......|.+++|.|+...+-.-...|...+|
T Consensus 267 ---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 267 ---HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred ---ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 2235689999999998865554445555544
No 113
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=6.8e-29 Score=204.35 Aligned_cols=305 Identities=18% Similarity=0.236 Sum_probs=226.6
Q ss_pred eecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCc--EEEEEec
Q 015301 28 LPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQR--FLVYASI 105 (409)
Q Consensus 28 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~ 105 (409)
+|......+.||++.|.|+...|.|.+||+|+.||+|+||.+.++.++.... .. +.|.+++|+|.+. .||++-.
T Consensus 388 FPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d---~~I~~vaw~P~~~~~vLAvA~~ 463 (733)
T KOG0650|consen 388 FPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FD---SEIRSVAWNPLSDLCVLAVAVG 463 (733)
T ss_pred CcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ec---ceeEEEEecCCCCceeEEEEec
Confidence 3445556889999999999999999999999999999999999998777644 22 3699999999764 4444443
Q ss_pred CCEEEEEEcCCCccccc-------cce-ecee---eeeeeecC-----------CCCcceeeEEEEEcCCCCeEEEEEe-
Q 015301 106 CAIVNIVDVGSSARESL-------ANV-TEIH---KGLDFSAD-----------GDEDEFGIFSVKFSTDGQELVAAGS- 162 (409)
Q Consensus 106 dg~i~~w~~~~~~~~~~-------~~~-~~~~---~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~l~~~~~- 162 (409)
..+.+.+..-+..... ... .... ....+... ...|...|..+.|+..|.||++...
T Consensus 464 -~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~ 542 (733)
T KOG0650|consen 464 -ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPD 542 (733)
T ss_pred -CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccC
Confidence 3355555433311100 000 0000 00011111 0135667999999999999998765
Q ss_pred --cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEc
Q 015301 163 --DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240 (409)
Q Consensus 163 --d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (409)
...|.|.++...+...-+....+.|.++.|+ |...+|++++. ..|+|||+- ....++.+......|..++.+
T Consensus 543 ~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FH-Ps~p~lfVaTq-~~vRiYdL~----kqelvKkL~tg~kwiS~msih 616 (733)
T KOG0650|consen 543 SGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFH-PSKPYLFVATQ-RSVRIYDLS----KQELVKKLLTGSKWISSMSIH 616 (733)
T ss_pred CCcceEEEEecccccccCchhhcCCceeEEEec-CCCceEEEEec-cceEEEehh----HHHHHHHHhcCCeeeeeeeec
Confidence 3579999998777666666667889999999 55566666654 679999974 566777777777889999999
Q ss_pred CCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeee
Q 015301 241 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 320 (409)
Q Consensus 241 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (409)
|.|..|+.++.|+.+..+|+.-. .++.+.+..|. ..+.+++
T Consensus 617 p~GDnli~gs~d~k~~WfDldls---------------------------------skPyk~lr~H~------~avr~Va 657 (733)
T KOG0650|consen 617 PNGDNLILGSYDKKMCWFDLDLS---------------------------------SKPYKTLRLHE------KAVRSVA 657 (733)
T ss_pred CCCCeEEEecCCCeeEEEEcccC---------------------------------cchhHHhhhhh------hhhhhhh
Confidence 99999999999999999998762 24455566665 3445667
Q ss_pred ecCCCCEEEEEeCCCeEEEEEcc-------CC--ceEEEeccCCcc----eeeeEEecCcCeEEeecCCCeEEEE
Q 015301 321 YSTAQKYIYTGSSDNSVYIYDLV-------SG--AQVAKLDFHNAP----VRDCCWHPIYPMLISSSWDCNIVRW 382 (409)
Q Consensus 321 ~s~~~~~l~~~~~dg~v~i~d~~-------~~--~~~~~~~~~~~~----v~~~~~s~~~~~l~s~~~dg~i~iw 382 (409)
|++.-.++++|+.||++.||.-. +. -++..+++|... |.+..|+|...+|++++.||+|++|
T Consensus 658 ~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 658 FHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 88888899999999999998532 11 356788899765 9999999999999999999999998
No 114
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.3e-28 Score=207.09 Aligned_cols=375 Identities=15% Similarity=0.201 Sum_probs=237.6
Q ss_pred eeeEEecCceeEeeccceEEEEeee--cCCCceeecCCCCeEEEEECCCCCEEEEEe--CCCcEEEEEcCCCeeeeeeee
Q 015301 5 REVNYSGRGRFSAADSCHVLSRYLP--VNGPWKVDGMNSRVYTSQFSNDGSFFVAAS--QESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~--~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~--~d~~i~vw~~~~~~~~~~~~~ 80 (409)
+.|+.+|-....+......+.-+-+ ....+.+..|..+++|++||++|+|+|+|- ....++||++.....+. +
T Consensus 41 ~gLa~~p~Sgl~aYpAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVA---E 117 (1080)
T KOG1408|consen 41 NGLASVPCSGLCAYPAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVA---E 117 (1080)
T ss_pred CcccccccccceeeccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchh---h
Confidence 4455566544444322222222222 233457778999999999999999999985 56789999998765444 4
Q ss_pred cccccceEEEEEeCCCCcEEEEEec--CCEEEEEEcCCCccccccceeceeeeeeeecCCC-------------------
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASI--CAIVNIVDVGSSARESLANVTEIHKGLDFSADGD------------------- 139 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 139 (409)
+..|+..|+|++|+|.++|+++.+. |-.|.+||++.+......++........|..++.
T Consensus 118 fvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~ 197 (1080)
T KOG1408|consen 118 FVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQS 197 (1080)
T ss_pred hhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccccccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccc
Confidence 5667779999999999999997764 4467888776554433333333333333333321
Q ss_pred ----------------------------------Cccee--------------------------eEEEEEcCCCCeEEE
Q 015301 140 ----------------------------------EDEFG--------------------------IFSVKFSTDGQELVA 159 (409)
Q Consensus 140 ----------------------------------~~~~~--------------------------v~~~~~~~~~~~l~~ 159 (409)
+.... .+|++. +.++|++
T Consensus 198 KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV--s~r~I~c 275 (1080)
T KOG1408|consen 198 KYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV--SSRLIAC 275 (1080)
T ss_pred cccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee--ecceEEE
Confidence 01111 122222 4568889
Q ss_pred EEecCeEEEEECCCCeeeeEEcC-C-----------------------CCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 160 AGSDNFIYVYDLQANKCSLRIPA-H-----------------------KSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 160 ~~~d~~i~v~d~~~~~~~~~~~~-~-----------------------~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
|+.+|.|++++.++-..+.+++. | --...++.|. +....|.+...|..+++||+|
T Consensus 276 gCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fd-et~~klscVYndhSlYvWDvr 354 (1080)
T KOG1408|consen 276 GCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFD-ETTDKLSCVYNDHSLYVWDVR 354 (1080)
T ss_pred eeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEec-CCCceEEEEEcCceEEEEecc
Confidence 99999999998776544433320 0 1123466777 677889899999999999999
Q ss_pred ccccCCceeeeeeccccceeEEEEcCC-----------CCeEEEEeCCCcEEEeeCCCCccccccccccccccccccccc
Q 015301 216 CFISKGRANGVLMGHLEGITFIDSRRD-----------GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME 284 (409)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (409)
.....++... +.-|...|+.+.--|. ...+++++.|++|++||+........... +.+.-+...+.
T Consensus 355 D~~kvgk~~s-~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrR--Nils~~l~ki~ 431 (1080)
T KOG1408|consen 355 DVNKVGKCSS-MLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRR--NILSANLSKIP 431 (1080)
T ss_pred ccccccceee-eeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeec--ccchhhhhcCc
Confidence 6555555443 4457777777765441 23489999999999999987322222111 11111111111
Q ss_pred ccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEe
Q 015301 285 YPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWH 364 (409)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s 364 (409)
+......+....+..+..-..... ....-.+.+++.||+|++||+|..-|.++||++.+.+....+.+|...|.++.|+
T Consensus 432 y~d~~~q~~~d~~~~~fdka~~s~-~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS 510 (1080)
T KOG1408|consen 432 YEDSTQQIMHDASAGIFDKALVST-CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYS 510 (1080)
T ss_pred cccCchhhhhhccCCcccccchhh-cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeec
Confidence 111111111111111100000000 0001123466899999999999999999999999999999999999999999998
Q ss_pred c---CcCeEEeecCCCeEEEEecCCCcc
Q 015301 365 P---IYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 365 ~---~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
. ..++|++++.|..|.++|+...-.
T Consensus 511 ~p~~~~kLLASasrdRlIHV~Dv~rny~ 538 (1080)
T KOG1408|consen 511 FPVLTNKLLASASRDRLIHVYDVKRNYD 538 (1080)
T ss_pred CchhhhHhhhhccCCceEEEEecccccc
Confidence 5 245999999999999999976443
No 115
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.2e-28 Score=185.04 Aligned_cols=263 Identities=16% Similarity=0.221 Sum_probs=197.5
Q ss_pred CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCc--EEEEEecCCEEE
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQR--FLVYASICAIVN 110 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~ 110 (409)
.+.+..|.++|++++.+ +.++|+||.|-+|+|||+....++..+.. |.+.|+++.|.+.-. .|++|+.||.|.
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~---HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS---HAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec---cccceEEEEecCCcchhheeeecCCCcEE
Confidence 35677999999999986 79999999999999999998766665444 566999999998764 899999999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEE
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTV 190 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~ 190 (409)
+|+....+..... ..|...|+.++.+|.+++-++.+.|+.++.||+-+|+.-..++- ....+.+
T Consensus 111 iw~~~~W~~~~sl---------------K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v 174 (362)
T KOG0294|consen 111 IWRVGSWELLKSL---------------KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLV 174 (362)
T ss_pred EEEcCCeEEeeee---------------cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceee
Confidence 9999876543222 24566799999999999999999999999999998876655542 2233559
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccc
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDN 270 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 270 (409)
.|+ +.|.+++.+..+ .|-+|.+. .......+.. ...+.++.|. ++..|++|+.|+.|.+||...
T Consensus 175 ~w~-~~Gd~F~v~~~~-~i~i~q~d----~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds-------- 238 (362)
T KOG0294|consen 175 SWS-PQGDHFVVSGRN-KIDIYQLD----NASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDS-------- 238 (362)
T ss_pred EEc-CCCCEEEEEecc-EEEEEecc----cHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCC--------
Confidence 999 888888887765 48888853 3333333322 2446666665 577899999999999999886
Q ss_pred ccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC-----
Q 015301 271 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG----- 345 (409)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~----- 345 (409)
..+...+.+|.......... -.|++.+|++++.||.|+|||++..
T Consensus 239 --------------------------~~~~~~~~AH~~RVK~i~~~----~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~ 288 (362)
T KOG0294|consen 239 --------------------------DTPLTEFLAHENRVKDIASY----TNPEHEYLVTASSDGFIKVWDIDMETKKRP 288 (362)
T ss_pred --------------------------CccceeeecchhheeeeEEE----ecCCceEEEEeccCceEEEEEccccccCCc
Confidence 45567777887544433322 2356889999999999999999765
Q ss_pred ceEEEeccCCcceeeeEE
Q 015301 346 AQVAKLDFHNAPVRDCCW 363 (409)
Q Consensus 346 ~~~~~~~~~~~~v~~~~~ 363 (409)
+++..+.. ...++|+..
T Consensus 289 ~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 289 TLLAELNT-NVRLTCLRV 305 (362)
T ss_pred ceeEEeec-CCccceeee
Confidence 34444442 445555543
No 116
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=2.1e-29 Score=203.71 Aligned_cols=266 Identities=15% Similarity=0.204 Sum_probs=198.7
Q ss_pred eecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE
Q 015301 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 158 (409)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (409)
....+|...|.++++.|.|..|++|+.|..|++||+......... |..........|.++.|++.|..|+
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~----------fr~l~P~E~h~i~sl~ys~Tg~~iL 230 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS----------FRQLQPCETHQINSLQYSVTGDQIL 230 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh----------hhccCcccccccceeeecCCCCeEE
Confidence 445667789999999999999999999999999999765432111 1111123344799999999999999
Q ss_pred EEEecCeEEEEECCCCeeee------------EEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeee
Q 015301 159 AAGSDNFIYVYDLQANKCSL------------RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV 226 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~~~~------------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 226 (409)
+.+.....+|+|-...+... ..++|...++|.+|+|.+.+.+++++.||+++|||+.......+.+..
T Consensus 231 vvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~ 310 (641)
T KOG0772|consen 231 VVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT 310 (641)
T ss_pred EEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee
Confidence 99888999999975444332 236899999999999888999999999999999998633222222221
Q ss_pred e--eccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeee
Q 015301 227 L--MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK 304 (409)
Q Consensus 227 ~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (409)
. .+..-+++.++|+++++.|++|+.||.|.+|+..+.... .....-.
T Consensus 311 k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-------------------------------p~~~vk~ 359 (641)
T KOG0772|consen 311 KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-------------------------------PVMKVKD 359 (641)
T ss_pred ccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc-------------------------------cceEeee
Confidence 1 123457889999999999999999999999998763321 1123334
Q ss_pred cccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC-ceEEEeccC--CcceeeeEEecCcCeEEeec------C
Q 015301 305 GHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG-AQVAKLDFH--NAPVRDCCWHPIYPMLISSS------W 375 (409)
Q Consensus 305 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~------~ 375 (409)
.|.... .+.++.||+||++|++-+.|+++++||++.. +++....+- .-+-+.++|||+.++|++|+ .
T Consensus 360 AH~~g~----~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~ 435 (641)
T KOG0772|consen 360 AHLPGQ----DITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMT 435 (641)
T ss_pred ccCCCC----ceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCC
Confidence 444322 3456689999999999999999999999875 455555443 23568899999999999985 3
Q ss_pred CCeEEEEecCCCcc
Q 015301 376 DCNIVRWEIPGIGE 389 (409)
Q Consensus 376 dg~i~iw~~~~~~~ 389 (409)
.|.+.++|..+.+.
T Consensus 436 ~g~L~f~d~~t~d~ 449 (641)
T KOG0772|consen 436 AGTLFFFDRMTLDT 449 (641)
T ss_pred CceEEEEeccceee
Confidence 57899998766543
No 117
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=2.1e-28 Score=204.66 Aligned_cols=370 Identities=13% Similarity=0.105 Sum_probs=253.4
Q ss_pred eeeEEec-CceeEee-ccceEEEEeeecC-----CCceeecCCCCeEEEEECCCCC---EEEEEeCCCcEEEEEcCCCe-
Q 015301 5 REVNYSG-RGRFSAA-DSCHVLSRYLPVN-----GPWKVDGMNSRVYTSQFSNDGS---FFVAASQESNIKVYNVDKNW- 73 (409)
Q Consensus 5 ~~~~~s~-dg~~~~~-~~~~~~~~~~~~~-----~~~~l~~h~~~v~~~~~s~~~~---~l~t~~~d~~i~vw~~~~~~- 73 (409)
-|+++.+ .++|+.+ ++......+.... ....+.||.+.|.+++|...+. +||++|.|..|+||.+.-+.
T Consensus 149 LcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 149 LCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDD 228 (764)
T ss_pred HHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCC
Confidence 4666677 4666555 4444444443333 2347889999999999987554 78999999999999974321
Q ss_pred -------------------eee-ee-------eecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccccccee
Q 015301 74 -------------------KIQ-KD-------IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVT 126 (409)
Q Consensus 74 -------------------~~~-~~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~ 126 (409)
... .. ....+|+.-|+++.|+|.+..|++++.|.++.+|...+..-.-.....
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vR 308 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVR 308 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEE
Confidence 000 00 113478899999999999999999999999999988765322111111
Q ss_pred ceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC---eeeeEEcCCCCCeEEEEEeCCCCcEEEEe
Q 015301 127 EIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN---KCSLRIPAHKSDVNTVCFADETGHLIFSG 203 (409)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 203 (409)
-... .+...+....-|+|+++.+++-+..|..++|-.+.. .+...+.+|.+.|.+++|. |.|++|++.
T Consensus 309 lGe~--------gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~-psGeflLsv 379 (764)
T KOG1063|consen 309 LGEV--------GGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD-PSGEFLLSV 379 (764)
T ss_pred eecc--------cccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeec-CCCCEEEEe
Confidence 1110 023446889999999999999999999999983221 2344568999999999999 899999999
Q ss_pred eCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCc----------ccccc----
Q 015301 204 SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS----------SNTTD---- 269 (409)
Q Consensus 204 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------~~~~~---- 269 (409)
+.|.+-|+|-.-....+...+..-+-|...++|+++-+....+++|.....+++|+....- +....
T Consensus 380 s~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p 459 (764)
T KOG1063|consen 380 SLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELP 459 (764)
T ss_pred ccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcc
Confidence 9999999987421111123334445577889999998866779999999999999875410 00000
Q ss_pred -ccccccccccccccc--------------------------cccc-ceeccccCccceeeeecccceeeeeEEEEeeee
Q 015301 270 -NSRLRDYDWDYRWME--------------------------YPSY-ARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY 321 (409)
Q Consensus 270 -~~~~~~~~~~~~~~~--------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (409)
......+........ .++. ...........++.+.||. .-+++++.
T Consensus 460 ~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHG------yEv~~l~~ 533 (764)
T KOG1063|consen 460 DGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHG------YEVYALAI 533 (764)
T ss_pred cccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCc------eeEEEEEe
Confidence 000000000000000 0000 0000111112233334444 45678889
Q ss_pred cCCCCEEEEEeCC-----CeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 322 STAQKYIYTGSSD-----NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 322 s~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
+|+|+++|+++.. ..|++|+..+......+.+|+-.|+.|+||||+++|++.|.|.++.+|+..+...
T Consensus 534 s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~ 606 (764)
T KOG1063|consen 534 SPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIK 606 (764)
T ss_pred cCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccc
Confidence 9999999999864 4699999999999999999999999999999999999999999999999865443
No 118
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.7e-28 Score=185.38 Aligned_cols=244 Identities=18% Similarity=0.244 Sum_probs=182.2
Q ss_pred ccceEEEEEeCC-CCcEEEEEecCCEEEEEEcCCC-ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE
Q 015301 84 LRWTITDTSLSP-DQRFLVYASICAIVNIVDVGSS-ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 84 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (409)
....|.+++||| ...+++.++.||+||+|+++.. .... +.. ..|.++|.+++|+.+|..+++|+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--ka~------------~~~~~PvL~v~WsddgskVf~g~ 91 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--KAQ------------QSHDGPVLDVCWSDDGSKVFSGG 91 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc--hhh------------hccCCCeEEEEEccCCceEEeec
Confidence 344799999999 4566668899999999999874 2221 111 24566899999999999999999
Q ss_pred ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCC--cEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEE
Q 015301 162 SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETG--HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 239 (409)
Q Consensus 162 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (409)
.|+.+++||+.+++ +..+..|.++|..+.|- +.. ..|++|+.|.+|+.||+| ...++..+. -.+.+.++..
T Consensus 92 ~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv-~~~~~~cl~TGSWDKTlKfWD~R----~~~pv~t~~-LPeRvYa~Dv 164 (347)
T KOG0647|consen 92 CDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWV-PGMNYQCLVTGSWDKTLKFWDTR----SSNPVATLQ-LPERVYAADV 164 (347)
T ss_pred cCCceEEEEccCCC-eeeeeecccceeEEEEe-cCCCcceeEecccccceeecccC----CCCeeeeee-ccceeeehhc
Confidence 99999999999995 55677899999999998 444 489999999999999987 555555554 3455666554
Q ss_pred cCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEee
Q 015301 240 RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSP 319 (409)
Q Consensus 240 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (409)
- ..+++++..+..|.+|++++......... .......+ ++
T Consensus 165 ~--~pm~vVata~r~i~vynL~n~~te~k~~~-----------------------------------SpLk~Q~R---~v 204 (347)
T KOG0647|consen 165 L--YPMAVVATAERHIAVYNLENPPTEFKRIE-----------------------------------SPLKWQTR---CV 204 (347)
T ss_pred c--CceeEEEecCCcEEEEEcCCCcchhhhhc-----------------------------------Ccccceee---EE
Confidence 3 45788889999999999987432211100 00111112 22
Q ss_pred eecCCCCEEEEEeCCCeEEEEEccCC--ceEEEeccCCc---------ceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 320 EYSTAQKYIYTGSSDNSVYIYDLVSG--AQVAKLDFHNA---------PVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 320 ~~s~~~~~l~~~~~dg~v~i~d~~~~--~~~~~~~~~~~---------~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
+.-+|....|.|+-+|++.|..+..+ +.-.+++.|.. .|++++|+|....|+|+|.||++.+||-+...
T Consensus 205 a~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~ 284 (347)
T KOG0647|consen 205 ACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART 284 (347)
T ss_pred EEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh
Confidence 34446666799999999999999887 44456666652 57889999999999999999999999976543
No 119
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.8e-28 Score=184.73 Aligned_cols=289 Identities=19% Similarity=0.273 Sum_probs=208.5
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccc
Q 015301 43 VYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESL 122 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~ 122 (409)
-.|+.|++.|.+||+|+.||.|.|||+.+.. +.+ ...+|..+|++++||+||+.|++++.|..|.+||+..+.....
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar--~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IAR--MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-hhh--hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 7899999999999999999999999998863 333 3456777999999999999999999999999999998875444
Q ss_pred cceeceeeeeeeecCCCCcceeeEEEEEcCCCC-eEEEEEecCeEEEEECCCCeeeeEEcC----CC-CCeEEEEEeCCC
Q 015301 123 ANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ-ELVAAGSDNFIYVYDLQANKCSLRIPA----HK-SDVNTVCFADET 196 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~----~~-~~v~~~~~~~~~ 196 (409)
..... +|+.+.|+|... ..++.-.+..-.+.++..++.. .++. .. ....+..|. +.
T Consensus 103 irf~s----------------pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fd-r~ 164 (405)
T KOG1273|consen 103 IRFDS----------------PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFD-RR 164 (405)
T ss_pred EEccC----------------ccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCcccccccccccccc-CC
Confidence 43322 699999999443 3333333444555565543211 1111 11 111223466 88
Q ss_pred CcEEEEeeCCCeEEEecccccccCCceeeeeeccc-cceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccc
Q 015301 197 GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL-EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 275 (409)
Q Consensus 197 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 275 (409)
|+++++|...|.+.++|.. +.+++..++-.. ..|..+.++..|+.|+..+.|..|+.|+++..........
T Consensus 165 g~yIitGtsKGkllv~~a~----t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e---- 236 (405)
T KOG1273|consen 165 GKYIITGTSKGKLLVYDAE----TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGE---- 236 (405)
T ss_pred CCEEEEecCcceEEEEecc----hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCC----
Confidence 9999999999999999954 667777666555 7889999999999999999999999999875211100000
Q ss_pred cccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-CCeEEEEEccCCceEEEeccC
Q 015301 276 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLVSGAQVAKLDFH 354 (409)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~ 354 (409)
..+.+.+..--.. ...-+.+||.+|.|+++|+. ...++||.-..|..++.+.|.
T Consensus 237 ---------------------~e~~~K~qDvVNk----~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~ 291 (405)
T KOG1273|consen 237 ---------------------VEPEHKLQDVVNK----LQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT 291 (405)
T ss_pred ---------------------cChhHHHHHHHhh----hhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCC
Confidence 0000111000000 01113368889999988875 467999999999999999988
Q ss_pred C-cceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 355 N-APVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 355 ~-~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
. ....++.|+|-...+++- ..|.+++|....
T Consensus 292 kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 292 KGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred chhheeecccccceeeeeec-cCCceEEEEeec
Confidence 7 578899999998888888 679999998754
No 120
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=3.7e-30 Score=202.28 Aligned_cols=250 Identities=17% Similarity=0.202 Sum_probs=204.0
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
....|.+.+..+.|-++...|++|+.|..|++|++...+......+. +..++|+++.|.++++++++
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa-------------Gs~g~it~~d~d~~~~~~iA 236 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA-------------GSLGNITSIDFDSDNKHVIA 236 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh-------------ccCCCcceeeecCCCceEEe
Confidence 34567889999999999999999999999999999877743333222 22346999999999999999
Q ss_pred EEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEE
Q 015301 160 AGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 239 (409)
Q Consensus 160 ~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (409)
++.|+.+++|++.+.+...++.+|.+.|+++.|. .....+++|+.|.+|++||+. ...+.+... ....+..|..
T Consensus 237 as~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~-~~~~~vVsgs~DRtiK~WDl~----k~~C~kt~l-~~S~cnDI~~ 310 (459)
T KOG0288|consen 237 ASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFK-LSHSRVVSGSADRTIKLWDLQ----KAYCSKTVL-PGSQCNDIVC 310 (459)
T ss_pred ecCCCceeeeeccchhhhhhhcccccceeeehhh-ccccceeeccccchhhhhhhh----hhheecccc-ccccccceEe
Confidence 9999999999999999999999999999999998 666669999999999999975 555555443 2345666666
Q ss_pred cCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEee
Q 015301 240 RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSP 319 (409)
Q Consensus 240 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (409)
+ ...++++..|+.|++||.+.. .+......+ ..+.++
T Consensus 311 ~--~~~~~SgH~DkkvRfwD~Rs~----------------------------------~~~~sv~~g-------g~vtSl 347 (459)
T KOG0288|consen 311 S--ISDVISGHFDKKVRFWDIRSA----------------------------------DKTRSVPLG-------GRVTSL 347 (459)
T ss_pred c--ceeeeecccccceEEEeccCC----------------------------------ceeeEeecC-------cceeeE
Confidence 5 556889999999999999883 333333333 235677
Q ss_pred eecCCCCEEEEEeCCCeEEEEEccCCceEEEeccC----CcceeeeEEecCcCeEEeecCCCeEEEEecCCCcccC
Q 015301 320 EYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH----NAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAP 391 (409)
Q Consensus 320 ~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 391 (409)
..++++..|.+.+.|.++.+.|+++.+....+.+. ....+.+.|||++.|+++||.||.|+||++.+++-+.
T Consensus 348 ~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~ 423 (459)
T KOG0288|consen 348 DLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEK 423 (459)
T ss_pred eeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEE
Confidence 88899999999999999999999999888877542 2348899999999999999999999999999876553
No 121
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=2.1e-27 Score=191.79 Aligned_cols=333 Identities=15% Similarity=0.205 Sum_probs=236.1
Q ss_pred eeeEEecCceeEeeccceEEEEeeecCCCc--eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe---------
Q 015301 5 REVNYSGRGRFSAADSCHVLSRYLPVNGPW--KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW--------- 73 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~--~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~--------- 73 (409)
.|++|.++|.-+..++...+..+-+..... ....|.+.|.++..-.+|.+|- |+.|+.|..||-.-..
T Consensus 250 l~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~ 328 (626)
T KOG2106|consen 250 LCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQ 328 (626)
T ss_pred EEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchh
Confidence 589999999988887766555555544332 3348999999999999998655 9999999999932100
Q ss_pred --eee--------------------------eeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccce
Q 015301 74 --KIQ--------------------------KDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANV 125 (409)
Q Consensus 74 --~~~--------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 125 (409)
.+. ......+|......++.+|+.+.+++++.|+.+++|+ ..+.......
T Consensus 329 ~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~ 406 (626)
T KOG2106|consen 329 FGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII 406 (626)
T ss_pred cCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe
Confidence 000 0111224555677889999999999999999999999 3333222222
Q ss_pred eceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeC
Q 015301 126 TEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD 205 (409)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 205 (409)
. .++.++.|+|.| .++.|+..|...+.|.++...+..-.. +.++++++|+ |++.+||.|+.
T Consensus 407 ~----------------d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ys-p~G~~lAvgs~ 467 (626)
T KOG2106|consen 407 E----------------DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYS-PDGAFLAVGSH 467 (626)
T ss_pred c----------------CceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEc-CCCCEEEEecC
Confidence 1 168999999999 899999999999999999666554444 8999999999 99999999999
Q ss_pred CCeEEEecccccccCCceeeee-eccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccccccc
Q 015301 206 DSLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME 284 (409)
Q Consensus 206 dg~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (409)
|+.|++|.+. ..+...... ..+..+|+.+.|++|++++.+.+.|-.|..|. ... +..... ..+..|......
T Consensus 468 d~~iyiy~Vs---~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~-~~~-~~~~ts--~kDvkW~t~~c~ 540 (626)
T KOG2106|consen 468 DNHIYIYRVS---ANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK-PSE-CKQITS--VKDVKWATYTCT 540 (626)
T ss_pred CCeEEEEEEC---CCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc-ccc-Ccccce--ecceeeeeeEEE
Confidence 9999999985 233333332 23348999999999999999999999999993 221 111111 222222211000
Q ss_pred ccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC---ceEEEeccCCcceeee
Q 015301 285 YPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG---AQVAKLDFHNAPVRDC 361 (409)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~---~~~~~~~~~~~~v~~~ 361 (409)
.. ...+-+.. ...+...+-+.+++++|+|.+.|.|++|...-- .+..++.+|.+-|+++
T Consensus 541 lG-------------F~v~g~s~-----~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V 602 (626)
T KOG2106|consen 541 LG-------------FEVFGGSD-----GTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNV 602 (626)
T ss_pred EE-------------EEEecccC-----CchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEE
Confidence 00 00000000 001112234456789999999999999987543 3456778999999999
Q ss_pred EEecCcCeEEeecCCCeEEEEec
Q 015301 362 CWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 362 ~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
+|.-+...|++.+.|..|..|++
T Consensus 603 ~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 603 AFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred EEeeCCceEEecCCCceEEEEEe
Confidence 99998888888889999999986
No 122
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.97 E-value=1.5e-28 Score=203.73 Aligned_cols=296 Identities=21% Similarity=0.229 Sum_probs=214.5
Q ss_pred EEECC---CCCEEEEEeCCCcEEEEEcCCCeee---eeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcc
Q 015301 46 SQFSN---DGSFFVAASQESNIKVYNVDKNWKI---QKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119 (409)
Q Consensus 46 ~~~s~---~~~~l~t~~~d~~i~vw~~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~ 119 (409)
..|++ ....||.+.+||.|.++|....... .++.....|...|..+.|-|....|++++.|.++++||+.+.+.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 56665 3457899999999999998754211 22344567888999999999778899999999999999998876
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCCe--------------------ee-
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANK--------------------CS- 177 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~--------------------~~- 177 (409)
..... ..+|.+.|.+++|.| +...|++|+.||.|.|||++-.. +.
T Consensus 135 ~G~~~-------------~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk 201 (720)
T KOG0321|consen 135 VGGRL-------------NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK 201 (720)
T ss_pred eccee-------------ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence 44321 126777899999999 45578899999999999986322 00
Q ss_pred ------eEEcCCCCCeEE---EEEeCCCCcEEEEeeC-CCeEEEecccccccCCc----eeeeeecc---ccceeEEEEc
Q 015301 178 ------LRIPAHKSDVNT---VCFADETGHLIFSGSD-DSLCKVWDRRCFISKGR----ANGVLMGH---LEGITFIDSR 240 (409)
Q Consensus 178 ------~~~~~~~~~v~~---~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~----~~~~~~~~---~~~v~~~~~~ 240 (409)
.....+...|.+ +.+. .|...|++++. |+.|++||+|....... ....+..| .-.+.++...
T Consensus 202 p~~kr~~k~kA~s~ti~ssvTvv~f-kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD 280 (720)
T KOG0321|consen 202 PLKKRIRKWKAASNTIFSSVTVVLF-KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD 280 (720)
T ss_pred hhhccccccccccCceeeeeEEEEE-eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEec
Confidence 011233344444 4444 68888998887 99999999984322111 11112223 3457778888
Q ss_pred CCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeee
Q 015301 241 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 320 (409)
Q Consensus 241 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (409)
..|.+|++.+.|+.|++||+..... .++..+.++....... .-.
T Consensus 281 ssGt~L~AsCtD~sIy~ynm~s~s~--------------------------------sP~~~~sg~~~~sf~v----ks~ 324 (720)
T KOG0321|consen 281 SSGTYLFASCTDNSIYFYNMRSLSI--------------------------------SPVAEFSGKLNSSFYV----KSE 324 (720)
T ss_pred CCCCeEEEEecCCcEEEEeccccCc--------------------------------CchhhccCcccceeee----eee
Confidence 8889999999999999999988442 2334444443322222 224
Q ss_pred ecCCCCEEEEEeCCCeEEEEEccCCc-eEEEeccCCcceeeeEEecCcC-eEEeecCCCeEEEEecCCCcccC
Q 015301 321 YSTAQKYIYTGSSDNSVYIYDLVSGA-QVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEIPGIGEAP 391 (409)
Q Consensus 321 ~s~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~ 391 (409)
.+|++.++++|+.|...++|.+.+.+ ....+.+|...|++++|.|..- -+++++.|..+++|++..+.+..
T Consensus 325 lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 325 LSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred cCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhc
Confidence 78899999999999999999998865 4667789999999999988544 57778999999999997766554
No 123
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.6e-28 Score=182.75 Aligned_cols=281 Identities=17% Similarity=0.173 Sum_probs=200.2
Q ss_pred eecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-eeeeeeeecccccceEEEEEeCC--CCcEEEEEecCCEEEEE
Q 015301 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSP--DQRFLVYASICAIVNIV 112 (409)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~~w 112 (409)
-.+|.+-|+|+.|.+.|+.+|||+.|++|+|||.+.. ........-+.|.+.|..+.|.+ -|+.+|+++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 3589999999999999999999999999999996544 34444555677888999999965 48999999999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC--CCCeEEEEEecCeEEEEECCCCee------eeEEc---
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--DGQELVAAGSDNFIYVYDLQANKC------SLRIP--- 181 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~------~~~~~--- 181 (409)
.-........... ... ..........|+++.|.| -|-.+++++.||.++||+....-. ...++
T Consensus 89 EE~~~~~~~~~~~--Wv~----~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~ 162 (361)
T KOG2445|consen 89 EEQEKSEEAHGRR--WVR----RTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVI 162 (361)
T ss_pred eecccccccccce--eEE----EEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhcc
Confidence 8642221111000 000 011112344699999999 477899999999999998754322 22222
Q ss_pred ----CCCCCeEEEEEeCC--CCcEEEEeeCC-----CeEEEecccccccCCceeeeeeccccceeEEEEcCC----CCeE
Q 015301 182 ----AHKSDVNTVCFADE--TGHLIFSGSDD-----SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD----GRYF 246 (409)
Q Consensus 182 ----~~~~~v~~~~~~~~--~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l 246 (409)
.+..+..|+.|+|. ...+|++|+.+ +.++||...........+..+.+|..+|+.++|.|+ -.+|
T Consensus 163 ~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~l 242 (361)
T KOG2445|consen 163 DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLL 242 (361)
T ss_pred CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeE
Confidence 35667889999842 34578887765 478999865433344566678899999999999996 3478
Q ss_pred EEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCC
Q 015301 247 ISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK 326 (409)
Q Consensus 247 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 326 (409)
++++.|| |+||.++....... . +
T Consensus 243 AvA~kDg-v~I~~v~~~~s~i~-----------------------------------~---------------------e 265 (361)
T KOG2445|consen 243 AVATKDG-VRIFKVKVARSAIE-----------------------------------E---------------------E 265 (361)
T ss_pred EEeecCc-EEEEEEeeccchhh-----------------------------------h---------------------h
Confidence 9999999 99999875211100 0 0
Q ss_pred EEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 327 YIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 327 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
-+.+...-+. + .-+.+..+.+|.+.|..+.|+-.|..|++.|.||+|++|...
T Consensus 266 e~~~~~~~~~---l---~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 266 EVLAPDLMTD---L---PVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred cccCCCCccc---c---ceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 0000111111 1 224567788999999999999999999999999999999764
No 124
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.2e-28 Score=194.48 Aligned_cols=271 Identities=17% Similarity=0.194 Sum_probs=205.4
Q ss_pred EeCC-CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEEEcCCCccccccceeceeeeeeee
Q 015301 58 ASQE-SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVDVGSSARESLANVTEIHKGLDFS 135 (409)
Q Consensus 58 ~~~d-~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 135 (409)
++.| .++.+||+.++....+....... .-.++..- .+.+++++. ....+.+|.+...........
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a--~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v---------- 79 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLA--QAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIV---------- 79 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccc--cchhhhhh-chhheeeecccCccccccccCchhhhhhhcc----------
Confidence 3334 45999999999665554322111 11111111 235676665 445799999876554331111
Q ss_pred cCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 136 ADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
-.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+ .|+.+|++|+.||.|.+|++.
T Consensus 80 -----~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 80 -----LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred -----cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEe-CCCcEEEecCCCccEEEEEEE
Confidence 12269999999999999988899999999999999999999999999999999 999999999999999999875
Q ss_pred cc-----ccCCceeeeeeccccceeEEEEcCC--CCeEEEEeCCCcEEEeeCCCCccccccccccccccccccccccccc
Q 015301 216 CF-----ISKGRANGVLMGHLEGITFIDSRRD--GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSY 288 (409)
Q Consensus 216 ~~-----~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (409)
.. .....+...+..|.-+|+.+...+. ..++++++.|.++++||+...
T Consensus 154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g------------------------- 208 (476)
T KOG0646|consen 154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG------------------------- 208 (476)
T ss_pred eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-------------------------
Confidence 32 1245677888999999999987664 458999999999999999873
Q ss_pred ceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC----------------ceEEEec
Q 015301 289 ARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG----------------AQVAKLD 352 (409)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~----------------~~~~~~~ 352 (409)
..+..+.-. ..+.+++.+|-+..+++|+++|.|.+.++... ..+..+.
T Consensus 209 ---------~LLlti~fp-------~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~ 272 (476)
T KOG0646|consen 209 ---------VLLLTITFP-------SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV 272 (476)
T ss_pred ---------eeeEEEecC-------CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeec
Confidence 233332222 22334567788999999999999999887542 2356677
Q ss_pred cCCc--ceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 353 FHNA--PVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 353 ~~~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
+|.+ .|++++.+-||.+|++|+.||.|.|||+.+.+
T Consensus 273 Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 273 GHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred cccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 8988 99999999999999999999999999997654
No 125
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=1.2e-27 Score=181.37 Aligned_cols=242 Identities=17% Similarity=0.254 Sum_probs=185.7
Q ss_pred cceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC
Q 015301 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN 164 (409)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 164 (409)
...|.++.|+|.+..|++++.||.+++||+.......... |..++.+++|.++ ..+++|+.||
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~----------------~~~plL~c~F~d~-~~~~~G~~dg 75 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK----------------HGAPLLDCAFADE-STIVTGGLDG 75 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee----------------cCCceeeeeccCC-ceEEEeccCc
Confidence 3479999999999999999999999999998875433332 3447999999874 4689999999
Q ss_pred eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCC
Q 015301 165 FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR 244 (409)
Q Consensus 165 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 244 (409)
.|+.+|+.++... .+..|..+|.|+.++ +..+.+++|++|++|++||.| .......+. ....|.++... ++
T Consensus 76 ~vr~~Dln~~~~~-~igth~~~i~ci~~~-~~~~~vIsgsWD~~ik~wD~R----~~~~~~~~d-~~kkVy~~~v~--g~ 146 (323)
T KOG1036|consen 76 QVRRYDLNTGNED-QIGTHDEGIRCIEYS-YEVGCVISGSWDKTIKFWDPR----NKVVVGTFD-QGKKVYCMDVS--GN 146 (323)
T ss_pred eEEEEEecCCcce-eeccCCCceEEEEee-ccCCeEEEcccCccEEEEecc----ccccccccc-cCceEEEEecc--CC
Confidence 9999999988754 456699999999999 778889999999999999987 222223332 23478877765 77
Q ss_pred eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCC
Q 015301 245 YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA 324 (409)
Q Consensus 245 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 324 (409)
.|++|+.|..+.+||+++.....+.. .......+ -++++-|+
T Consensus 147 ~LvVg~~~r~v~iyDLRn~~~~~q~r-----------------------------------eS~lkyqt---R~v~~~pn 188 (323)
T KOG1036|consen 147 RLVVGTSDRKVLIYDLRNLDEPFQRR-----------------------------------ESSLKYQT---RCVALVPN 188 (323)
T ss_pred EEEEeecCceEEEEEcccccchhhhc-----------------------------------cccceeEE---EEEEEecC
Confidence 89999999999999999855332111 01111122 23355567
Q ss_pred CCEEEEEeCCCeEEEEEccCC----ceEEEeccCCc---------ceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 325 QKYIYTGSSDNSVYIYDLVSG----AQVAKLDFHNA---------PVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 325 ~~~l~~~~~dg~v~i~d~~~~----~~~~~~~~~~~---------~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
+.=.++++-||+|.+=.++.. +.-..++.|.. +|++|+|+|-...|+||+.||.|.+||+.+.+..
T Consensus 189 ~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl 267 (323)
T KOG1036|consen 189 GEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL 267 (323)
T ss_pred CCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhh
Confidence 888999999999988776655 34556666632 8999999999999999999999999999876543
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.97 E-value=1.5e-26 Score=193.93 Aligned_cols=276 Identities=13% Similarity=0.125 Sum_probs=193.2
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEE-EEEecCCEEEEEEcCCCccccccceeceee
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFL-VYASICAIVNIVDVGSSARESLANVTEIHK 130 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~ 130 (409)
++.+++++.|+.|++||+.++...... .. + ..+.+++|+|+++.+ ++++.++.|++||..+++.......
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~-~~--~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----- 71 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTF-PV--G-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS----- 71 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEE-EC--C-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-----
Confidence 357889999999999999887554443 22 2 246789999999877 5667889999999987654321110
Q ss_pred eeeeecCCCCcceeeEEEEEcCCCCeEEEE-EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCC-e
Q 015301 131 GLDFSADGDEDEFGIFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDS-L 208 (409)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~ 208 (409)
...+..++|+|+++.++++ ..++.|.+||+.+.+.+..+.. ...+.+++|+ +++.++++++.++ .
T Consensus 72 -----------~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~-~dg~~l~~~~~~~~~ 138 (300)
T TIGR03866 72 -----------GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVS-PDGKIVVNTSETTNM 138 (300)
T ss_pred -----------CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEEC-CCCCEEEEEecCCCe
Confidence 0124568899999877655 4589999999998887777653 3456889999 8899998888765 4
Q ss_pred EEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEE-eCCCcEEEeeCCCCcccccccccccccccccccccccc
Q 015301 209 CKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPS 287 (409)
Q Consensus 209 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (409)
+.+||.+ ......... .......++|+|++++|+++ ..++.|.+||+++.+..
T Consensus 139 ~~~~d~~----~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~--------------------- 192 (300)
T TIGR03866 139 AHFIDTK----TYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVI--------------------- 192 (300)
T ss_pred EEEEeCC----CCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceee---------------------
Confidence 6677864 333333322 23345779999999988655 45899999999874321
Q ss_pred cceeccccCccceeeeeccccee-eeeEEEEeeeecCCCCEEEEE-eCCCeEEEEEccCCceEEEeccCCcceeeeEEec
Q 015301 288 YARRLKHPHDQSLATYKGHSVLR-TLIRCYFSPEYSTAQKYIYTG-SSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHP 365 (409)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~ 365 (409)
..+..+.... ........+.++|++++++++ ..++.+.+||+.+++.+..+. +...+.+++|+|
T Consensus 193 -------------~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~ 258 (300)
T TIGR03866 193 -------------KKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTP 258 (300)
T ss_pred -------------eeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECC
Confidence 1111000000 000011234688999986554 456789999999888876654 455799999999
Q ss_pred CcCeEEee-cCCCeEEEEecCCCcc
Q 015301 366 IYPMLISS-SWDCNIVRWEIPGIGE 389 (409)
Q Consensus 366 ~~~~l~s~-~~dg~i~iw~~~~~~~ 389 (409)
++++|+++ +.+|.|.+||+.+.+.
T Consensus 259 ~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 259 DEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCcE
Confidence 99988876 5689999999988653
No 127
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.97 E-value=7.1e-28 Score=183.89 Aligned_cols=282 Identities=21% Similarity=0.281 Sum_probs=214.6
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCee-----------eeeeeecccccceEEEEEeC-------CCCcEEEEEe
Q 015301 43 VYTSQFSNDGSFFVAASQESNIKVYNVDKNWK-----------IQKDIETKALRWTITDTSLS-------PDQRFLVYAS 104 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~-----------~~~~~~~~~~~~~v~~~~~s-------~~~~~l~~~~ 104 (409)
...+.|||||..|++-+.|..+.+|++....- ....... .....|...+|- |+..++++.+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCCccceeeecc
Confidence 45678999999999999999999999863210 0011111 112367777774 6778999999
Q ss_pred cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEEC-CCCeee--eEE-
Q 015301 105 ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDL-QANKCS--LRI- 180 (409)
Q Consensus 105 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~-~~~~~~--~~~- 180 (409)
.+.-|++||.-+++........+.... -....+++|+|||.+|++|. ...|+++|+ +.|... ...
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de----------~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDE----------YTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHh----------hhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhh
Confidence 999999999999987666554433222 12477899999999998774 688999999 444322 111
Q ss_pred ----cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeC-CCcE
Q 015301 181 ----PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTT 255 (409)
Q Consensus 181 ----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i 255 (409)
.+..+-+.+++|+|.+...++.|+....+-||. .....++..+.+|.+.|+.+.|.++|+.|++|.. |..|
T Consensus 200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~----~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkI 275 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYN----DDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKI 275 (406)
T ss_pred hcccccccceeeeeeccCCCCcceeeecccceeeeEe----cCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeE
Confidence 233678899999988888999999988888877 3478888889999999999999999999999886 7789
Q ss_pred EEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC
Q 015301 256 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 335 (409)
Q Consensus 256 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 335 (409)
..||++... .++..+..|.. .+..+..|. ..|++++|++|+.||
T Consensus 276 l~WDiR~~~---------------------------------~pv~~L~rhv~-~TNQRI~FD--ld~~~~~LasG~tdG 319 (406)
T KOG2919|consen 276 LCWDIRYSR---------------------------------DPVYALERHVG-DTNQRILFD--LDPKGEILASGDTDG 319 (406)
T ss_pred EEEeehhcc---------------------------------chhhhhhhhcc-CccceEEEe--cCCCCceeeccCCCc
Confidence 999999732 23333444432 122234443 458899999999999
Q ss_pred eEEEEEccC-CceEEEeccCCcceeeeEEecCcCeEEeecCC
Q 015301 336 SVYIYDLVS-GAQVAKLDFHNAPVRDCCWHPIYPMLISSSWD 376 (409)
Q Consensus 336 ~v~i~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 376 (409)
.|++||+++ +..+..+..|+..|+.++++|--.++++++..
T Consensus 320 ~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 320 SVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 999999998 77788888899999999999998888888754
No 128
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4e-28 Score=177.97 Aligned_cols=258 Identities=19% Similarity=0.230 Sum_probs=196.7
Q ss_pred cccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC--CCCeEEEE
Q 015301 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--DGQELVAA 160 (409)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~ 160 (409)
.|+..|..+...-.|+.||+++.|++|+|+.++....... .....+|.+||..++|.. -|..|+++
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~l------------l~~L~Gh~GPVwqv~wahPk~G~iLASc 76 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKL------------LAELTGHSGPVWKVAWAHPKFGTILASC 76 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCcee------------eeEecCCCCCeeEEeecccccCcEeeEe
Confidence 4666777777777899999999999999999987764211 122247888999999976 79999999
Q ss_pred EecCeEEEEECCCCeee--eEEcCCCCCeEEEEEeCCC-CcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEE
Q 015301 161 GSDNFIYVYDLQANKCS--LRIPAHKSDVNTVCFADET-GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~~--~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 237 (409)
+.||.|.||.-++++.. .....|...|++++|.|.+ +-.|++++.||.|.|.+.+.. ...........|.-.|+++
T Consensus 77 sYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~-g~w~t~ki~~aH~~GvnsV 155 (299)
T KOG1332|consen 77 SYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS-GGWTTSKIVFAHEIGVNSV 155 (299)
T ss_pred ecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC-CCccchhhhhcccccccee
Confidence 99999999998887543 3456799999999999643 567889999999999998732 1334445567899999999
Q ss_pred EEcCC---C-----------CeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeee
Q 015301 238 DSRRD---G-----------RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY 303 (409)
Q Consensus 238 ~~~~~---~-----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (409)
+|.|. | +.|++|+.|..|+||+..+.. ...-..+
T Consensus 156 swapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~--------------------------------w~~e~~l 203 (299)
T KOG1332|consen 156 SWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS--------------------------------WKLERTL 203 (299)
T ss_pred eecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--------------------------------hhhhhhh
Confidence 99985 4 569999999999999988731 1222346
Q ss_pred ecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC-c--eEEEeccCCcceeeeEEecCcCeEEeecCCCeEE
Q 015301 304 KGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG-A--QVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 380 (409)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~-~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 380 (409)
.+|.... ....++|...--..+||+++.||+|.||..... + ....++.....+..++||..|+.|+.++.|+.|.
T Consensus 204 ~~H~dwV--RDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvt 281 (299)
T KOG1332|consen 204 EGHKDWV--RDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVT 281 (299)
T ss_pred hhcchhh--hhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEE
Confidence 6666322 233445554444578999999999999987632 1 1223344567899999999999999999999999
Q ss_pred EEecCCC
Q 015301 381 RWEIPGI 387 (409)
Q Consensus 381 iw~~~~~ 387 (409)
+|.-...
T Consensus 282 lwke~~~ 288 (299)
T KOG1332|consen 282 LWKENVD 288 (299)
T ss_pred EEEeCCC
Confidence 9986543
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.2e-27 Score=202.59 Aligned_cols=251 Identities=16% Similarity=0.226 Sum_probs=202.9
Q ss_pred cccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc-cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE
Q 015301 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA-RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (409)
.|...-+.++|.|+|++|++++.||.|++|+..... ....... +...|.+++. ++.+|++|+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~---------------~g~~v~~ia~--~s~~f~~~s 73 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI---------------SGELVSSIAC--YSNHFLTGS 73 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc---------------cCceeEEEee--cccceEEee
Confidence 466678999999999999999999999999987663 2211111 1224666655 556899999
Q ss_pred ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC
Q 015301 162 SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR 241 (409)
Q Consensus 162 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 241 (409)
.+++|.+|.+.+++.-..+...+-++.+++|+ .+|++++.|+.|-.|++.++. .......+++|.++|.++.|+|
T Consensus 74 ~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~-g~g~~iaagsdD~~vK~~~~~----D~s~~~~lrgh~apVl~l~~~p 148 (933)
T KOG1274|consen 74 EQNTVLRYKFPSGEEDTILARFTLPIRDLAVS-GSGKMIAAGSDDTAVKLLNLD----DSSQEKVLRGHDAPVLQLSYDP 148 (933)
T ss_pred ccceEEEeeCCCCCccceeeeeeccceEEEEe-cCCcEEEeecCceeEEEEecc----ccchheeecccCCceeeeeEcC
Confidence 99999999999988766666677899999999 999999999999999999964 6777888999999999999999
Q ss_pred CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeee
Q 015301 242 DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY 321 (409)
Q Consensus 242 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (409)
++.+|++.+.||.|++||+.+............... ....+.+..++|
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~--------------------------------~~~s~i~~~~aW 196 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE--------------------------------FILSRICTRLAW 196 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhhhcccCCcccc--------------------------------ccccceeeeeee
Confidence 999999999999999999997543332211111000 011345567789
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCceEEEecc--CCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 322 STAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF--HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 322 s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
+|++..++....|+.|++|+..+.+....+.. +...+.+++|+|.|+|||+++.||.|.|||+++.
T Consensus 197 ~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 197 HPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred cCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc
Confidence 99988899999999999999999988887753 4555999999999999999999999999999963
No 130
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.2e-27 Score=189.76 Aligned_cols=287 Identities=16% Similarity=0.215 Sum_probs=217.9
Q ss_pred CEEEEEe-CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeee
Q 015301 53 SFFVAAS-QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKG 131 (409)
Q Consensus 53 ~~l~t~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (409)
.+++++. ....+.+|.+.............+ +|.+++-+|+|.+|+.|+..|.|++|.+.++.......
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg---~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~------- 120 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPG---PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS------- 120 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhccccc---ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH-------
Confidence 5565554 345789999877655543333444 89999999999999999899999999999998654432
Q ss_pred eeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECC---------CCeeeeEEcCCCCCeEEEEEeCC-CCcEEE
Q 015301 132 LDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ---------ANKCSLRIPAHKSDVNTVCFADE-TGHLIF 201 (409)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~---------~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~ 201 (409)
.|...|+++.|+.||.+|++|+.||.|.+|++. +-++...+..|+-+|+++...+. ....++
T Consensus 121 --------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~ 192 (476)
T KOG0646|consen 121 --------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLY 192 (476)
T ss_pred --------hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEE
Confidence 455579999999999999999999999999863 34667788899999999998742 456899
Q ss_pred EeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccc
Q 015301 202 SGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYR 281 (409)
Q Consensus 202 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 281 (409)
+++.|.++++||+. .+..+..+. ....+.+++.+|-++.++.|+.+|.|.+.++..........
T Consensus 193 TaS~D~t~k~wdlS----~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v----------- 256 (476)
T KOG0646|consen 193 TASEDRTIKLWDLS----LGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGV----------- 256 (476)
T ss_pred EecCCceEEEEEec----cceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccc-----------
Confidence 99999999999974 565555554 56789999999999999999999999999887643211100
Q ss_pred cccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeee
Q 015301 282 WMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDC 361 (409)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~ 361 (409)
.....+..+..+..+.+|... ..+.+++++-||.+|++|+.||.|.|||+.+.++++++....++|+.+
T Consensus 257 -------~~k~~~~~~t~~~~~~Gh~~~----~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL 325 (476)
T KOG0646|consen 257 -------NQKGRHEENTQINVLVGHENE----SAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNL 325 (476)
T ss_pred -------cccccccccceeeeeccccCC----cceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhcccccee
Confidence 011222345667778888754 244566788899999999999999999999999999998778899999
Q ss_pred EEecCcCeEEe-ecCCCeEEEEec
Q 015301 362 CWHPIYPMLIS-SSWDCNIVRWEI 384 (409)
Q Consensus 362 ~~s~~~~~l~s-~~~dg~i~iw~~ 384 (409)
.+.|-.+-.+. -+..-.+-.|++
T Consensus 326 ~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 326 QINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred EeeccccceecccccCccCCchHh
Confidence 99765442222 223334444444
No 131
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.4e-28 Score=187.67 Aligned_cols=275 Identities=17% Similarity=0.217 Sum_probs=206.1
Q ss_pred eeEEecCc-eeEeecc---ceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 6 EVNYSGRG-RFSAADS---CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 6 ~~~~s~dg-~~~~~~~---~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
|++-.|.. ..+++++ ...+|.+....+..++..|.+.|..++++. ..+++++.|.+|+.|.++.. ...... .
T Consensus 71 ~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p~~til-g 146 (433)
T KOG0268|consen 71 CLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-PLHTIL-G 146 (433)
T ss_pred hhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-cceeee-c
Confidence 44445544 2234433 445677666677889999999999999987 66889999999999998864 222221 1
Q ss_pred ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEE
Q 015301 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAA 160 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 160 (409)
...+..+.-+..+..+++++. .|.|||.............. ..|.++.|+|.. ..|+++
T Consensus 147 ---~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~---------------Dti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 147 ---KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGA---------------DSISSVKFNPVETSILASC 206 (433)
T ss_pred ---cccccccccccccccccccCc--eeeecccccCCccceeecCC---------------CceeEEecCCCcchheeee
Confidence 225666776666777888764 58999997665433332211 148999999954 456777
Q ss_pred EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEc
Q 015301 161 GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (409)
+.|+.|.+||++++.++..+. -...-+.++|+| +...++++++|..++.||+|. -..++....+|.+.|.+++|+
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~---l~~p~~v~~dhvsAV~dVdfs 281 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRN---LSRPLNVHKDHVSAVMDVDFS 281 (433)
T ss_pred ccCCceEEEecccCCccceee-eeccccceecCc-cccceeeccccccceehhhhh---hcccchhhcccceeEEEeccC
Confidence 799999999999999888764 345568899994 888899999999999999983 466778889999999999999
Q ss_pred CCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeee
Q 015301 241 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 320 (409)
Q Consensus 241 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (409)
|.|+.+++|+.|.+|+||..+...... .+.. .-...++++.
T Consensus 282 ptG~EfvsgsyDksIRIf~~~~~~SRd----------------------------------iYht-----kRMq~V~~Vk 322 (433)
T KOG0268|consen 282 PTGQEFVSGSYDKSIRIFPVNHGHSRD----------------------------------IYHT-----KRMQHVFCVK 322 (433)
T ss_pred CCcchhccccccceEEEeecCCCcchh----------------------------------hhhH-----hhhheeeEEE
Confidence 999999999999999999988733211 1110 1113456778
Q ss_pred ecCCCCEEEEEeCCCeEEEEEccCCceE
Q 015301 321 YSTAQKYIYTGSSDNSVYIYDLVSGAQV 348 (409)
Q Consensus 321 ~s~~~~~l~~~~~dg~v~i~d~~~~~~~ 348 (409)
||-|.+++++|+.|+.|++|.....+.+
T Consensus 323 ~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 323 YSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred EeccccEEEecCCCcceeeeecchhhhc
Confidence 9999999999999999999987655443
No 132
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=2e-27 Score=179.22 Aligned_cols=237 Identities=15% Similarity=0.250 Sum_probs=185.4
Q ss_pred cccceEEEEEeCC-CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEE
Q 015301 83 ALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAA 160 (409)
Q Consensus 83 ~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 160 (409)
.|.+.|+++...+ .|+++++|+.||.|.+||++.............+....-.+...+|...|.++.|-| |...+.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 3556899999887 689999999999999999987653333333223333334556678999999999999 66678888
Q ss_pred EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeC--CCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEE
Q 015301 161 GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD--ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 238 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (409)
+.|.++++||..+-+....++ ..+.|.+-+++| ....++++|..+-.|++.|+. .+.....+.+|.+.|.++.
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~----SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA----SGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred cccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc----CCcceeeeccccCceEEEE
Confidence 899999999999888777665 456777777774 234678889999999999964 8999999999999999999
Q ss_pred EcCCCCe-EEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEE
Q 015301 239 SRRDGRY-FISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 317 (409)
Q Consensus 239 ~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (409)
|+|...+ |++|+.||.|++||++..
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRra------------------------------------------------------ 221 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRA------------------------------------------------------ 221 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecc------------------------------------------------------
Confidence 9998775 678899999999999861
Q ss_pred eeeecCCCCEEEEEeCCCeEEEEEccCCce---EEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcccCCCc
Q 015301 318 SPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ---VAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAPLPK 394 (409)
Q Consensus 318 ~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 394 (409)
.|..++.|..+++. +++-..|.+.|..++|+.++.++++++.|..+++|+..+++....+.
T Consensus 222 ----------------sgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~ 285 (397)
T KOG4283|consen 222 ----------------SGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREF 285 (397)
T ss_pred ----------------cceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccccc
Confidence 12233444443322 22345799999999999999999999999999999999887654443
No 133
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=5.3e-28 Score=195.25 Aligned_cols=250 Identities=19% Similarity=0.299 Sum_probs=201.7
Q ss_pred cccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe
Q 015301 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (409)
.|..-|.++++|...+.+.+|+ .|.|+|||+.......-....+.. ....-|.++...|||+.|++|+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl----------~rdnyiRSckL~pdgrtLivGGe 485 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCL----------NRDNYIRSCKLLPDGRTLIVGGE 485 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCcccccccc----------CcccceeeeEecCCCceEEeccc
Confidence 4566788999999999999888 588999999765332221111111 11235899999999999999999
Q ss_pred cCeEEEEECCCCeeee--EEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEc
Q 015301 163 DNFIYVYDLQANKCSL--RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240 (409)
Q Consensus 163 d~~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (409)
-.++.|||+....+.. .+....-...+++.+ ++.++.+++..||.|.|||++ +...+..+.+|.+.+.||..+
T Consensus 486 astlsiWDLAapTprikaeltssapaCyALa~s-pDakvcFsccsdGnI~vwDLh----nq~~VrqfqGhtDGascIdis 560 (705)
T KOG0639|consen 486 ASTLSIWDLAAPTPRIKAELTSSAPACYALAIS-PDAKVCFSCCSDGNIAVWDLH----NQTLVRQFQGHTDGASCIDIS 560 (705)
T ss_pred cceeeeeeccCCCcchhhhcCCcchhhhhhhcC-CccceeeeeccCCcEEEEEcc----cceeeecccCCCCCceeEEec
Confidence 9999999998765443 333333456778888 899999999999999999986 788899999999999999999
Q ss_pred CCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeee
Q 015301 241 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 320 (409)
Q Consensus 241 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (409)
+||..|.+|+-|.+|+.||++.....+. |. ...-+|++.
T Consensus 561 ~dGtklWTGGlDntvRcWDlregrqlqq-------------------------------------hd----F~SQIfSLg 599 (705)
T KOG0639|consen 561 KDGTKLWTGGLDNTVRCWDLREGRQLQQ-------------------------------------HD----FSSQIFSLG 599 (705)
T ss_pred CCCceeecCCCccceeehhhhhhhhhhh-------------------------------------hh----hhhhheecc
Confidence 9999999999999999999998433222 21 113457888
Q ss_pred ecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 321 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 321 ~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
++|++.+|++|-+++.+.|.... +.....+.-|.+-|.++.|.+.|+++++.+.|+.+..|..+-+...
T Consensus 600 ~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasi 668 (705)
T KOG0639|consen 600 YCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 668 (705)
T ss_pred cCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccce
Confidence 99999999999999999998864 4445667779999999999999999999999999999999877654
No 134
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.7e-26 Score=184.46 Aligned_cols=285 Identities=14% Similarity=0.261 Sum_probs=220.1
Q ss_pred cceeeEEecCceeEeeccceEEEEeeecCCC-----ceeecCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeee
Q 015301 3 VGREVNYSGRGRFSAADSCHVLSRYLPVNGP-----WKVDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNWKIQ 76 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~-----~~l~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~ 76 (409)
.++++.|.|....+..++.....+++..... +.+.--..+|.+..|.|+|. .+++++....++.||+.+.+ +.
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak-~~ 293 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK-VT 293 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc-cc
Confidence 4789999999887777666544444333222 22333468999999999999 89999999999999998873 33
Q ss_pred eeeecccc-cceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC
Q 015301 77 KDIETKAL-RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ 155 (409)
Q Consensus 77 ~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (409)
+.....++ ...+.....+|++++|+..+..|.|.+....+++.....++.. .|..++|+.+++
T Consensus 294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG----------------~v~~~~fsSdsk 357 (514)
T KOG2055|consen 294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG----------------VVSDFTFSSDSK 357 (514)
T ss_pred cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc----------------EEeeEEEecCCc
Confidence 33333333 2357778899999999999999999999998888765555443 589999999999
Q ss_pred eEEEEEecCeEEEEECCCCeeeeEEcCCCCC--eEEEEEeCCCCcEEEEeeCCCeEEEeccccc--ccCCceeeeeeccc
Q 015301 156 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSD--VNTVCFADETGHLIFSGSDDSLCKVWDRRCF--ISKGRANGVLMGHL 231 (409)
Q Consensus 156 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~ 231 (409)
.|++.+.+|.|++||+++..++..+.. .+. -++++.+ .++.+||+|+..|.|-|||.... ....+++..+..-.
T Consensus 358 ~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S-~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt 435 (514)
T KOG2055|consen 358 ELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCIS-LNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT 435 (514)
T ss_pred EEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeec-CCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh
Confidence 999999999999999999988888753 222 3567777 88999999999999999996522 22345666666677
Q ss_pred cceeEEEEcCCCCeEEEEeC--CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccce
Q 015301 232 EGITFIDSRRDGRYFISNGK--DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL 309 (409)
Q Consensus 232 ~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (409)
..|+++.|+++.++|+.++. +..+++-.+.+ ..+|..-+..
T Consensus 436 t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS-------------------------------------~TVFsNfP~~ 478 (514)
T KOG2055|consen 436 TAITSLQFNHDAQILAIASRVKKNALRLVHVPS-------------------------------------CTVFSNFPTS 478 (514)
T ss_pred eeeeeeeeCcchhhhhhhhhccccceEEEeccc-------------------------------------eeeeccCCCC
Confidence 88999999999999887775 56788887765 3344444444
Q ss_pred eeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 310 RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 310 ~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
...+..+.+++|||.+.+||.|..+|+|.+|.+.
T Consensus 479 n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 479 NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 5555677888999999999999999999999874
No 135
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7.7e-26 Score=189.08 Aligned_cols=283 Identities=17% Similarity=0.269 Sum_probs=223.4
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~ 118 (409)
-..+|.++||+.+.+.||.+-.||.|-+|++..+......+.. +.+..|.+++|+ ++..|++.+.+|.|.-||+.+.+
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g-~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG-PEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec-CCCCceeeEEEc-cCCeEEeecCCceEEEEecccCc
Confidence 3478999999999999999999999999999998777666655 456689999999 55678889999999999999887
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeE--EcCCCCCeEEEEEeCCC
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR--IPAHKSDVNTVCFADET 196 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~ 196 (409)
........ .+.|++++.+|.+..+++|+.||.+..++...++.... +...++.|.+++|+ ++
T Consensus 102 ~~~~~d~~---------------gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~-~~ 165 (691)
T KOG2048|consen 102 QKYNIDSN---------------GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN-PT 165 (691)
T ss_pred eeEEecCC---------------CcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEec-CC
Confidence 65443322 33699999999999999999999888888887766543 34457899999999 89
Q ss_pred CcEEEEeeCCCeEEEecccccccCCceeeee-------ec-cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccc
Q 015301 197 GHLIFSGSDDSLCKVWDRRCFISKGRANGVL-------MG-HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTT 268 (409)
Q Consensus 197 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 268 (409)
+..+++|+.||.|++||.. .+..+... .. ...-|+++.|-.+ ..|++|...|+|.+||...
T Consensus 166 ~~~i~~Gs~Dg~Iriwd~~----~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~------ 234 (691)
T KOG2048|consen 166 GTKIAGGSIDGVIRIWDVK----SGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIF------ 234 (691)
T ss_pred ccEEEecccCceEEEEEcC----CCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccC------
Confidence 9999999999999999975 44433311 11 2334677777754 4699999999999999887
Q ss_pred ccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce-
Q 015301 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ- 347 (409)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~- 347 (409)
+..++.+..|. .-+.+++.++++..+++++.|+.|.-|...+.+.
T Consensus 235 ----------------------------gTLiqS~~~h~------adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~ 280 (691)
T KOG2048|consen 235 ----------------------------GTLIQSHSCHD------ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE 280 (691)
T ss_pred ----------------------------cchhhhhhhhh------cceeEEEEcCCCCeEEEccCCCceEEEEecCCccc
Confidence 44555566665 3455667788899999999999999998876643
Q ss_pred ---EEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 348 ---VAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 348 ---~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
......|...|.+++..++ .|++|+.|..+.+-....
T Consensus 281 wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 281 WVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred eeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 2233568888999998876 899999999998866544
No 136
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=5.6e-29 Score=209.15 Aligned_cols=255 Identities=24% Similarity=0.331 Sum_probs=216.2
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeee
Q 015301 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGL 132 (409)
Q Consensus 53 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 132 (409)
.+++....+-.+++|+... ...|...+.++..-..++.+++|+.|..+.+|.+........
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~---------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S---------- 65 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTRE---------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS---------- 65 (825)
T ss_pred cccceeeeeeccccccchh---------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe----------
Confidence 3444555556677887653 233555677777766788999999999999998866544322
Q ss_pred eeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEe
Q 015301 133 DFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVW 212 (409)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 212 (409)
..+|..+|.++.|+++..+|++|+.+|+|++||++..+.++++.+|...+..+.|+ |-+.+.+.|+.|+.+++|
T Consensus 66 -----~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~-P~~~~~a~gStdtd~~iw 139 (825)
T KOG0267|consen 66 -----LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFH-PYGEFFASGSTDTDLKIW 139 (825)
T ss_pred -----eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeec-cceEEeccccccccceeh
Confidence 13677799999999999999999999999999999999999999999999999999 889999999999999999
Q ss_pred cccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceec
Q 015301 213 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 292 (409)
Q Consensus 213 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (409)
|.| ...+...+.+|...+..+.|+|+|++++.++.|..+++||+..
T Consensus 140 D~R----k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a------------------------------ 185 (825)
T KOG0267|consen 140 DIR----KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA------------------------------ 185 (825)
T ss_pred hhh----ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccc------------------------------
Confidence 976 7788888999999999999999999999999999999999987
Q ss_pred cccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEe
Q 015301 293 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLIS 372 (409)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 372 (409)
++.+..|+.|. ..+.++.|+|..-+++.|+.|++|++||+++.+.+.........|.++.|+|+++.+++
T Consensus 186 ----gk~~~ef~~~e------~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~ 255 (825)
T KOG0267|consen 186 ----GKLSKEFKSHE------GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLS 255 (825)
T ss_pred ----ccccccccccc------ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeec
Confidence 55666777776 33345568888889999999999999999999999998888899999999999998888
Q ss_pred ecCC
Q 015301 373 SSWD 376 (409)
Q Consensus 373 ~~~d 376 (409)
|..+
T Consensus 256 G~q~ 259 (825)
T KOG0267|consen 256 GEQI 259 (825)
T ss_pred Cchh
Confidence 8654
No 137
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=2.8e-27 Score=188.60 Aligned_cols=217 Identities=14% Similarity=0.197 Sum_probs=176.2
Q ss_pred CceeecCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCee----eeeeeecccccceEEEEEeCCC-CcEEEEEecC
Q 015301 33 PWKVDGMNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWK----IQKDIETKALRWTITDTSLSPD-QRFLVYASIC 106 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d 106 (409)
..+|.||...=+.+.|++.. -.|++++.|++|++||+..... +.......+|...|..++|++- ...+++++.|
T Consensus 170 dl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd 249 (422)
T KOG0264|consen 170 DLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD 249 (422)
T ss_pred ceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCC
Confidence 34899999988999999854 3688999999999999976533 4445567789999999999994 5677888999
Q ss_pred CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCC-eeeeEEcCCC
Q 015301 107 AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHK 184 (409)
Q Consensus 107 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~ 184 (409)
+.+.|||++++ ...... ....|..+|+|++|+| ++..||+|+.|++|.+||+++. +++.++.+|.
T Consensus 250 ~~L~iwD~R~~-~~~~~~------------~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~ 316 (422)
T KOG0264|consen 250 GKLMIWDTRSN-TSKPSH------------SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHE 316 (422)
T ss_pred CeEEEEEcCCC-CCCCcc------------cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCC
Confidence 99999999974 211111 1235677899999999 6778899999999999999875 4567889999
Q ss_pred CCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccC----------CceeeeeeccccceeEEEEcCCCC-eEEEEeCCC
Q 015301 185 SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK----------GRANGVLMGHLEGITFIDSRRDGR-YFISNGKDQ 253 (409)
Q Consensus 185 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg 253 (409)
..|.++.|+|.....|++++.|+.+.+||+...... ...+....+|...|..+.|+|+.. .|++.+.|+
T Consensus 317 dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN 396 (422)
T KOG0264|consen 317 DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDN 396 (422)
T ss_pred cceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCc
Confidence 999999999999999999999999999998632211 233456678999999999999766 577888999
Q ss_pred cEEEeeCCC
Q 015301 254 TTKLWDIRK 262 (409)
Q Consensus 254 ~i~iwd~~~ 262 (409)
.+.||.+..
T Consensus 397 ~LqIW~~s~ 405 (422)
T KOG0264|consen 397 ILQIWQMAE 405 (422)
T ss_pred eEEEeeccc
Confidence 999999874
No 138
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.3e-27 Score=178.56 Aligned_cols=255 Identities=22% Similarity=0.319 Sum_probs=214.5
Q ss_pred eecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE
Q 015301 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 158 (409)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (409)
..+.+|...|..++-......+.+++.|.+.++|.++++.+...+. +|.+.|++++|++.+.+++
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~---------------GH~GSVNsikfh~s~~L~l 206 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYT---------------GHTGSVNSIKFHNSGLLLL 206 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeec---------------ccccceeeEEeccccceEE
Confidence 3467788899999988777899999999999999999998754432 6777899999999999999
Q ss_pred EEEecCeEEEEEC------CC----------------------------------CeeeeEEcCCCCCeEEEEEeCCCCc
Q 015301 159 AAGSDNFIYVYDL------QA----------------------------------NKCSLRIPAHKSDVNTVCFADETGH 198 (409)
Q Consensus 159 ~~~~d~~i~v~d~------~~----------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~ 198 (409)
+++.|++..||.. .+ ..++..+.+|.+.|.+..|. ..+.
T Consensus 207 TaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL-~gg~ 285 (481)
T KOG0300|consen 207 TASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWL-AGGQ 285 (481)
T ss_pred EccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhh-cCcc
Confidence 9999999999962 11 01345677899999999999 8999
Q ss_pred EEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccc
Q 015301 199 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDW 278 (409)
Q Consensus 199 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 278 (409)
.+++++.|.+..+||+ +++..+..+.+|....+.++-+|..+++++++.|.+.++||++..
T Consensus 286 Q~vTaSWDRTAnlwDV----Etge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea--------------- 346 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDV----ETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA--------------- 346 (481)
T ss_pred eeeeeeccccceeeee----ccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh---------------
Confidence 9999999999999996 489999999999999999999999999999999999999999851
Q ss_pred ccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC-ceEEEeccCCcc
Q 015301 279 DYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG-AQVAKLDFHNAP 357 (409)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~ 357 (409)
-..+..|.+|... + .+..|.. +..+++|+.|.+|++||+++. .++.+++ ..++
T Consensus 347 ------------------I~sV~VFQGHtdt--V----TS~vF~~-dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~ 400 (481)
T KOG0300|consen 347 ------------------IQSVAVFQGHTDT--V----TSVVFNT-DDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSP 400 (481)
T ss_pred ------------------cceeeeecccccc--e----eEEEEec-CCceeecCCCceEEEeeeccccCcceeee-cCCc
Confidence 2457788999843 2 3333443 456899999999999999886 4677777 5778
Q ss_pred eeeeEEecCcCeEEeecCCCeEEEEecCCCcccCCCc
Q 015301 358 VRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAPLPK 394 (409)
Q Consensus 358 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 394 (409)
++.++.+..++.++.--.+..|++||+.....+..|.
T Consensus 401 ~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPr 437 (481)
T KOG0300|consen 401 ANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPR 437 (481)
T ss_pred cceeEeecCCceEEeccCCceEEEEecCCCccccCCc
Confidence 9999999888899988888999999999888777764
No 139
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=6.5e-27 Score=195.93 Aligned_cols=242 Identities=21% Similarity=0.275 Sum_probs=198.1
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEE-EEEcC-CCCeE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFS-VKFST-DGQEL 157 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~l 157 (409)
...+|...|..++..+. ..+++++.||++++|+-..++......... |.+-|.. +++.+ ++-.+
T Consensus 9 ~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~-------------~~g~i~~~i~y~e~~~~~l 74 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEG-------------PKGFIANSICYAESDKGRL 74 (745)
T ss_pred EeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceeccc-------------CcceeeccceeccccCcce
Confidence 45678888888887654 478999999999999987766543222221 1222333 66665 45569
Q ss_pred EEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEE
Q 015301 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237 (409)
Q Consensus 158 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 237 (409)
++|+.|+.|.+|...+..+...+.+|...|.++... .++. +++|+.|.++++|. .+++...+.+|+..|+++
T Consensus 75 ~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~-~~~~-~iSgSWD~TakvW~------~~~l~~~l~gH~asVWAv 146 (745)
T KOG0301|consen 75 VVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIG-EDGT-LISGSWDSTAKVWR------IGELVYSLQGHTASVWAV 146 (745)
T ss_pred EeecccceEEEEecCCCCchhhhhccccceeeeecC-CcCc-eEecccccceEEec------chhhhcccCCcchheeee
Confidence 999999999999999999999999999999999987 5555 99999999999999 567777799999999999
Q ss_pred EEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEE
Q 015301 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 317 (409)
Q Consensus 238 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (409)
..-|++ .+++|+.|.+|++|.- +..+++|.+|... +.
T Consensus 147 ~~l~e~-~~vTgsaDKtIklWk~------------------------------------~~~l~tf~gHtD~------VR 183 (745)
T KOG0301|consen 147 ASLPEN-TYVTGSADKTIKLWKG------------------------------------GTLLKTFSGHTDC------VR 183 (745)
T ss_pred eecCCC-cEEeccCcceeeeccC------------------------------------Cchhhhhccchhh------ee
Confidence 999887 7999999999999985 3567889998843 33
Q ss_pred eeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 318 SPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 318 ~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
.+++-+ +..+++++.||.|++|++ +++.+.++.+|...|.+++..+++..++++++|++++||+.....
T Consensus 184 gL~vl~-~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~ 252 (745)
T KOG0301|consen 184 GLAVLD-DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECV 252 (745)
T ss_pred eeEEec-CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCceE
Confidence 334433 456889999999999999 899999999999999999988888999999999999999987433
No 140
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=7.9e-26 Score=193.35 Aligned_cols=327 Identities=18% Similarity=0.183 Sum_probs=229.6
Q ss_pred eEEEEECCCC--CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccc
Q 015301 43 VYTSQFSNDG--SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (409)
Q Consensus 43 v~~~~~s~~~--~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (409)
|+++. +|.- +.++.|+.+|.+++|++.++..+..... +...|+++.-+|--..+|.|..+|+|.+++++.++..
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~---~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil 237 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQE---FFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL 237 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecc---cccceeEeccCCcceEEEEeccCceEEEEEcccCcEE
Confidence 66654 4432 4578899999999999999977766444 4458999999999899999999999999999988875
Q ss_pred cccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeE-EEEEecCeEEEEECCCCeeeeEEc-CCCCCeEEEEEeCCCCc
Q 015301 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL-VAAGSDNFIYVYDLQANKCSLRIP-AHKSDVNTVCFADETGH 198 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ 198 (409)
...+.. .++|++++|..||+.+ ++|+..|.+.+||++..+....+. .|.+.|....|. +...
T Consensus 238 ~sFk~d---------------~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl-~~ep 301 (910)
T KOG1539|consen 238 MSFKQD---------------WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFL-PGEP 301 (910)
T ss_pred EEEEcc---------------ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceec-CCCc
Confidence 554432 1369999999998765 556667999999999888777665 798999999999 8888
Q ss_pred EEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEc-CCCCeEEEEeCCCcEEEeeCCCCcccccccc------
Q 015301 199 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR-RDGRYFISNGKDQTTKLWDIRKMSSNTTDNS------ 271 (409)
Q Consensus 199 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------ 271 (409)
.+++.+.|..+++|=..........++.-.+|..+..++.|. .+|..+.+++.|++++.+++......+....
T Consensus 302 Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~ 381 (910)
T KOG1539|consen 302 VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKR 381 (910)
T ss_pred eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccc
Confidence 999999999999886654344456777778999999999987 6788999999999999888754221111100
Q ss_pred ---------------c--------cccccc----------------ccccccc------cc-------cceecc------
Q 015301 272 ---------------R--------LRDYDW----------------DYRWMEY------PS-------YARRLK------ 293 (409)
Q Consensus 272 ---------------~--------~~~~~~----------------~~~~~~~------~~-------~~~~~~------ 293 (409)
+ .+...| +.+.-.. +. ....+.
T Consensus 382 ~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN 461 (910)
T KOG1539|consen 382 AKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN 461 (910)
T ss_pred cccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc
Confidence 0 000011 1110000 00 000000
Q ss_pred ----ccCccceeeeecccce--------eeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce--------------
Q 015301 294 ----HPHDQSLATYKGHSVL--------RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ-------------- 347 (409)
Q Consensus 294 ----~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~-------------- 347 (409)
......+..+...... ......+..++.+.-++.+++++.+|.+.+||.....+
T Consensus 462 F~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv 541 (910)
T KOG1539|consen 462 FVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIV 541 (910)
T ss_pred eEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceee
Confidence 0001111111111000 01112344555666678899999999999999865542
Q ss_pred ---------------------------EEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 348 ---------------------------VAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 348 ---------------------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
+..+.+|...|++++|||||++|++++.|++|++||+.++..
T Consensus 542 ~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~l 610 (910)
T KOG1539|consen 542 YHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTL 610 (910)
T ss_pred eeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcce
Confidence 223456999999999999999999999999999999998754
No 141
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.9e-27 Score=200.40 Aligned_cols=248 Identities=20% Similarity=0.337 Sum_probs=193.0
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCe
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNF 165 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~ 165 (409)
...+|...++-..++.++ ...+.+|.+..........+... ........+..+.|.. +.++|++++..|.
T Consensus 41 ~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~k--------~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~ 111 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRFK--------TKQNKFYSAADVKWGQLYSNLIATCSTNGV 111 (839)
T ss_pred ccceEeecCCcceeEEec-ccceeeEeeCcccCCcceeeecc--------cccceeeehhhcccccchhhhheeecCCCc
Confidence 466777888888888777 35677887765543322222110 0011122467788876 5678999999999
Q ss_pred EEEEECCC---CeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC-
Q 015301 166 IYVYDLQA---NKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR- 241 (409)
Q Consensus 166 i~v~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 241 (409)
|.+||+.. .+.+..+..|...++++.|++...++|++|+.||.|++||+| .......+.+..+.|..+.|+|
T Consensus 112 i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR----~~~S~~t~~~nSESiRDV~fsp~ 187 (839)
T KOG0269|consen 112 ISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR----SKKSKSTFRSNSESIRDVKFSPG 187 (839)
T ss_pred EEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeee----cccccccccccchhhhceeeccC
Confidence 99999987 556667889999999999998899999999999999999988 5666667777888999999999
Q ss_pred CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeee
Q 015301 242 DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY 321 (409)
Q Consensus 242 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (409)
.+.+|+++...|.+++||+|.. .+....+..|. +.++++.|
T Consensus 188 ~~~~F~s~~dsG~lqlWDlRqp---------------------------------~r~~~k~~AH~------GpV~c~nw 228 (839)
T KOG0269|consen 188 YGNKFASIHDSGYLQLWDLRQP---------------------------------DRCEKKLTAHN------GPVLCLNW 228 (839)
T ss_pred CCceEEEecCCceEEEeeccCc---------------------------------hhHHHHhhccc------CceEEEee
Confidence 4678999999999999999984 34555666776 55667789
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCce--EEEeccCCcceeeeEEecCcC-eEEeec--CCCeEEEEecCCC
Q 015301 322 STAQKYIYTGSSDNSVYIYDLVSGAQ--VAKLDFHNAPVRDCCWHPIYP-MLISSS--WDCNIVRWEIPGI 387 (409)
Q Consensus 322 s~~~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~-~l~s~~--~dg~i~iw~~~~~ 387 (409)
+|++.+||+|+.|+.|+|||+.+.+. +.++. ...+|..+.|-|+.+ .|++++ .|-.|+|||+...
T Consensus 229 hPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 229 HPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred cCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence 99999999999999999999986643 44443 356899999999988 667665 5889999999754
No 142
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.5e-26 Score=175.32 Aligned_cols=290 Identities=16% Similarity=0.173 Sum_probs=199.7
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC--CCcEEEEEecCCEEEEEEcCCCccccccceeceee
Q 015301 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP--DQRFLVYASICAIVNIVDVGSSARESLANVTEIHK 130 (409)
Q Consensus 53 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~ 130 (409)
..+|++...|.|++||..++..+... .++...++.++|.. ....+.+|+.||+|++||++..............
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f---k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~- 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF---KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS- 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee---cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-
Confidence 56888889999999999997555553 34444677888866 4677889999999999999987654443332211
Q ss_pred eeeeecCCCCcceeeEEEEEcCCCCeEEEEEe----cCeEEEEECCCCee-eeEE-cCCCCCeEEEEEeCCCCcEEEEee
Q 015301 131 GLDFSADGDEDEFGIFSVKFSTDGQELVAAGS----DNFIYVYDLQANKC-SLRI-PAHKSDVNTVCFADETGHLIFSGS 204 (409)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~v~d~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~l~~~~ 204 (409)
..+..+++.+.+++.+++|+. +..|.+||++..+. +..+ ..|...|+++.|+|.+.++|++|+
T Consensus 117 -----------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGS 185 (376)
T KOG1188|consen 117 -----------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGS 185 (376)
T ss_pred -----------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeec
Confidence 125677777777888888765 67899999988766 4443 679999999999999999999999
Q ss_pred CCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC-CeEEEEeCCCcEEEeeCCCCcccccccccccccccccccc
Q 015301 205 DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG-RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWM 283 (409)
Q Consensus 205 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (409)
.||.|.+||+....+.. .+.....|...|..+.|..++ +.|.+-+......+|+++...+......+.......
T Consensus 186 vDGLvnlfD~~~d~EeD-aL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~---- 260 (376)
T KOG1188|consen 186 VDGLVNLFDTKKDNEED-ALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDL---- 260 (376)
T ss_pred ccceEEeeecCCCcchh-hHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhH----
Confidence 99999999987543222 333344577889999998776 458888888999999999866443332211100000
Q ss_pred cccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-CCeEEEEEcc---C---CceEEEecc-CC
Q 015301 284 EYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLV---S---GAQVAKLDF-HN 355 (409)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v~i~d~~---~---~~~~~~~~~-~~ 355 (409)
.....+-..+..|. ..++...+.++. -+...++-+. + .+.+..+++ |.
T Consensus 261 ----------r~~~~~dY~I~~~~--------------~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~ 316 (376)
T KOG1188|consen 261 ----------RKEDNCDYVINEHS--------------PGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHE 316 (376)
T ss_pred ----------Hhhhhhhheeeccc--------------CCCcceEEEeccccCceeEEEeeecccccccCccccccCCcH
Confidence 00000001111110 113344444444 4555555443 2 345566666 67
Q ss_pred cceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 356 APVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 356 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
.-|.++.|...+.++.|||+||.+.+|..+.
T Consensus 317 eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 317 EIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred HHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 7889999988888999999999999999644
No 143
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=4.2e-24 Score=179.17 Aligned_cols=263 Identities=16% Similarity=0.146 Sum_probs=183.1
Q ss_pred ceeecCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE-ecCCEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFF-VAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNI 111 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~~ 111 (409)
..+.+|. .+.+++|+|+|+.+ ++++.++.|++||..+++...... . +. .+..++|+|+++.++++ ..++.+++
T Consensus 25 ~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~--~~-~~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 25 RTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-S--GP-DPELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred EEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc-C--CC-CccEEEECCCCCEEEEEcCCCCeEEE
Confidence 3455444 46789999999976 566788999999998875543322 1 11 35678999999987655 56899999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC-eEEEEECCCCeeeeEEcCCCCCeEEE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN-FIYVYDLQANKCSLRIPAHKSDVNTV 190 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~~v~~~ 190 (409)
||+.+.+....... ...+.+++|+|++++++++..++ .+.+||..+++....+.. ...+..+
T Consensus 100 ~d~~~~~~~~~~~~----------------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~ 162 (300)
T TIGR03866 100 IDIETRKVLAEIPV----------------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFA 162 (300)
T ss_pred EECCCCeEEeEeeC----------------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEE
Confidence 99987543221110 11367899999999999888764 567789988877655542 3345789
Q ss_pred EEeCCCCcEEE-EeeCCCeEEEecccccccCCceeeeeeccc-----c--ceeEEEEcCCCCeEEE-EeCCCcEEEeeCC
Q 015301 191 CFADETGHLIF-SGSDDSLCKVWDRRCFISKGRANGVLMGHL-----E--GITFIDSRRDGRYFIS-NGKDQTTKLWDIR 261 (409)
Q Consensus 191 ~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~--~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~ 261 (409)
+|+ +++.+|+ ++..++.|++||++ .++....+..+. . ....++|+|+++++++ .+.++.+.+||++
T Consensus 163 ~~s-~dg~~l~~~~~~~~~v~i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 163 EFT-ADGKELWVSSEIGGTVSVIDVA----TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred EEC-CCCCEEEEEcCCCCEEEEEEcC----cceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 999 7787775 44569999999975 444444332211 1 2346889999998654 4556789999987
Q ss_pred CCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe-CCCeEEEE
Q 015301 262 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS-SDNSVYIY 340 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~v~i~ 340 (409)
+.+ .+...... ..++.++|+|+|++|+++. .+|.|.+|
T Consensus 238 ~~~----------------------------------~~~~~~~~-------~~~~~~~~~~~g~~l~~~~~~~~~i~v~ 276 (300)
T TIGR03866 238 TYE----------------------------------VLDYLLVG-------QRVWQLAFTPDEKYLLTTNGVSNDVSVI 276 (300)
T ss_pred CCc----------------------------------EEEEEEeC-------CCcceEEECCCCCEEEEEcCCCCeEEEE
Confidence 622 11111111 1244668999999998864 58999999
Q ss_pred EccCCceEEEeccCCcceeeeEEec
Q 015301 341 DLVSGAQVAKLDFHNAPVRDCCWHP 365 (409)
Q Consensus 341 d~~~~~~~~~~~~~~~~v~~~~~s~ 365 (409)
|+.+++.+..++.. ...+.++++|
T Consensus 277 d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 277 DVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred ECCCCcEEEEEEcc-cccceeEeCC
Confidence 99999999999754 5558888765
No 144
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.95 E-value=2.1e-25 Score=170.78 Aligned_cols=308 Identities=17% Similarity=0.250 Sum_probs=215.5
Q ss_pred eeecCCCCeEEEEECC-----CCCEEEEEeCCCcEEEEEcCCCe--eeeeeeecccccceEEEEEeCCC----CcEEEEE
Q 015301 35 KVDGMNSRVYTSQFSN-----DGSFFVAASQESNIKVYNVDKNW--KIQKDIETKALRWTITDTSLSPD----QRFLVYA 103 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~-----~~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~ 103 (409)
...+|+.+|..++|++ .-..+||++.+ .+.+|+..... .+.+......+...-..++|+-+ ..+||++
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3457899999999985 23467777654 68899877654 33333333445667778888653 4689999
Q ss_pred ecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCeeeeEE--
Q 015301 104 SICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCSLRI-- 180 (409)
Q Consensus 104 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~-- 180 (409)
+.-|.|+|.|+.+++..... .+|...|+.+.+.|+ .+++++++.|..|++|++++..++..+
T Consensus 112 G~~GvIrVid~~~~~~~~~~---------------~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNY---------------RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred cceeEEEEEecchhhhccce---------------eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc
Confidence 99999999999887653332 256678999999995 478899999999999999999998876
Q ss_pred -cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccccc--ccCCce----------------------eeeeecccccee
Q 015301 181 -PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF--ISKGRA----------------------NGVLMGHLEGIT 235 (409)
Q Consensus 181 -~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~----------------------~~~~~~~~~~v~ 235 (409)
.+|.+.|.++.|+ .++.+|++++.|.++++|++... ...-+. ..+-.-|...|.
T Consensus 177 ~egHrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred cccccCcEEEEEEc-CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 6799999999999 89999999999999999998611 000000 001223666666
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEE
Q 015301 236 FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRC 315 (409)
Q Consensus 236 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (409)
|+.|- |+++++-+-++.|..|.....+.......+.. .....+..+.-... ...
T Consensus 256 Cvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~e--------------------s~~Ti~~~~~~~~c----~iW 309 (385)
T KOG1034|consen 256 CVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPE--------------------SATTILGEFDYPMC----DIW 309 (385)
T ss_pred HHHHH--hhheeecccCceEEEEecchhhhhhhccCCCc--------------------cceeeeeEeccCcc----ceE
Confidence 77765 67899988899999998743221111000000 00011122221111 111
Q ss_pred EEeeeecCCCCEEEEEeCCCeEEEEEccCCceE--EEecc--CCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 316 YFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV--AKLDF--HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 316 ~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~--~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
...-+|.|-++.||.|...|.|++||++..++. .++.. ....|...+|+.|+..|+..+.|+.|.-||.-
T Consensus 310 firf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 310 FIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 122345667899999999999999999887663 22221 24579999999999999999999999999853
No 145
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.2e-27 Score=201.18 Aligned_cols=201 Identities=27% Similarity=0.483 Sum_probs=181.1
Q ss_pred ceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCC
Q 015301 142 EFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG 221 (409)
Q Consensus 142 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 221 (409)
...+.++..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|+ ....+|++|+.+|+|++||+. ..
T Consensus 28 saav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~-~~E~LlaagsasgtiK~wDle----eA 102 (825)
T KOG0267|consen 28 SAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFD-TSERLLAAGSASGTIKVWDLE----EA 102 (825)
T ss_pred hhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecC-cchhhhcccccCCceeeeehh----hh
Confidence 3357777776678889999999999999998888888899999999999999 888999999999999999964 88
Q ss_pred ceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcccee
Q 015301 222 RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 301 (409)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (409)
+.+..+.+|...+.++.|+|-+.+.+.++.|+.+++||++. ..+..
T Consensus 103 k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk----------------------------------~Gc~~ 148 (825)
T KOG0267|consen 103 KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK----------------------------------KGCSH 148 (825)
T ss_pred hhhhhhhccccCcceeeeccceEEeccccccccceehhhhc----------------------------------cCcee
Confidence 88899999999999999999999999999999999999997 35667
Q ss_pred eeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEE
Q 015301 302 TYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVR 381 (409)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 381 (409)
.+.+|. ..+-.+.|+|+|++++.|++|..++|||...|+.+..|+.|.+.+..+.|+|..-++++||.|+++++
T Consensus 149 ~~~s~~------~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f 222 (825)
T KOG0267|consen 149 TYKSHT------RVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRF 222 (825)
T ss_pred eecCCc------ceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeee
Confidence 777766 33445589999999999999999999999999999999999999999999999889999999999999
Q ss_pred EecCCC
Q 015301 382 WEIPGI 387 (409)
Q Consensus 382 w~~~~~ 387 (409)
||+++-
T Consensus 223 ~dletf 228 (825)
T KOG0267|consen 223 WDLETF 228 (825)
T ss_pred ecccee
Confidence 999853
No 146
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.4e-25 Score=175.63 Aligned_cols=299 Identities=15% Similarity=0.150 Sum_probs=204.3
Q ss_pred EEEEECCCCCEEEEEeCC---Cc--EEEEEcCCCeeee--eeeecccccceEEEEEeCC-------CCcEEEEEecCCEE
Q 015301 44 YTSQFSNDGSFFVAASQE---SN--IKVYNVDKNWKIQ--KDIETKALRWTITDTSLSP-------DQRFLVYASICAIV 109 (409)
Q Consensus 44 ~~~~~s~~~~~l~t~~~d---~~--i~vw~~~~~~~~~--~~~~~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i 109 (409)
-.+..-|+.++++++-.+ .. ++||+-... .+. .-+.. .....|++|.. -|+++|+|+.|..|
T Consensus 129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~-nlYvHHD~il---pafPLC~ewld~~~~~~~~gNyvAiGtmdp~I 204 (463)
T KOG0270|consen 129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEE-NLYVHHDFIL---PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEI 204 (463)
T ss_pred ccceeccCCcEEEEeeccCCceEEEEEEEcCCCc-ceeEecceec---cCcchhhhhhhcCCCCCCCcceEEEeccCcee
Confidence 355667777777776433 23 455554331 111 11111 12456777743 26899999999999
Q ss_pred EEEEcCCCccc-cccceeceeee-----eeeecCCCCcceeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCeeeeEEcC
Q 015301 110 NIVDVGSSARE-SLANVTEIHKG-----LDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCSLRIPA 182 (409)
Q Consensus 110 ~~w~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 182 (409)
.|||+.-.... +...+...... -.-.....+|+..|.+++|+.. .+.|++|+.|.+|.+||+.++++..++..
T Consensus 205 eIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~ 284 (463)
T KOG0270|consen 205 EIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH 284 (463)
T ss_pred EEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhh
Confidence 99998643211 11111100000 0011112368888999999874 45788999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC-CeEEEEeCCCcEEEeeCC
Q 015301 183 HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG-RYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 183 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~ 261 (409)
|.+.|.++.|+|..+.+|++|+.|++|.+.|.|.. ..........+.|..++|.|.. ..++++..||+|+-+|+|
T Consensus 285 ~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~----~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R 360 (463)
T KOG0270|consen 285 HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP----SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR 360 (463)
T ss_pred cCCceeEEEecCCCceEEEeccccceEEeeeccCc----cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecC
Confidence 99999999999999999999999999999999842 2222222345789999999864 467778889999999999
Q ss_pred CCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC-CCCEEEEEeCCCeEEEE
Q 015301 262 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGSSDNSVYIY 340 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~v~i~ 340 (409)
+. ++++.+++.|......+ ++++ ...++++++.|+.|++|
T Consensus 361 ~~---------------------------------~~~vwt~~AHd~~ISgl------~~n~~~p~~l~t~s~d~~Vklw 401 (463)
T KOG0270|consen 361 NP---------------------------------GKPVWTLKAHDDEISGL------SVNIQTPGLLSTASTDKVVKLW 401 (463)
T ss_pred CC---------------------------------CCceeEEEeccCCcceE------EecCCCCcceeeccccceEEEE
Confidence 84 36677888887543332 2222 34689999999999999
Q ss_pred EccCCceEEEe--ccCCcceeeeEEecCcC-eEEeecCCCeEEEEecCCCcc
Q 015301 341 DLVSGAQVAKL--DFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 341 d~~~~~~~~~~--~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~ 389 (409)
++....+.... ...-+...|.++.|+-. .|+.|+..+.+++||+.....
T Consensus 402 ~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 402 KFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred eecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 98755442211 11123456667777766 778888888999999987543
No 147
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.4e-24 Score=164.20 Aligned_cols=285 Identities=13% Similarity=0.196 Sum_probs=203.8
Q ss_pred ceeeEEecCceeEeecc---ceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 4 GREVNYSGRGRFSAADS---CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~---~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
..|+.||+-|.++|.+. ..+++++........+.+|..+|++++||+||+.|+|+|.|..|.+||+..+..+++. .
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri-r 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI-R 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE-E
Confidence 46899999999999854 4577888888888899999999999999999999999999999999999998655543 3
Q ss_pred cccccceEEEEEeCCCCcEEE-EEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE
Q 015301 81 TKALRWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
+. ++|..+.|+|.....+ +.-.+..-.+-++..+....+..-.+.. ......+..|.+.|+++++
T Consensus 105 f~---spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~d-----------ln~sas~~~fdr~g~yIit 170 (405)
T KOG1273|consen 105 FD---SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGD-----------LNSSASHGVFDRRGKYIIT 170 (405)
T ss_pred cc---CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccc-----------cccccccccccCCCCEEEE
Confidence 33 3899999999644333 3334444556666543322222111111 0112233468899999999
Q ss_pred EEecCeEEEEECCCCeeeeEEcCCC-CCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc-------c
Q 015301 160 AGSDNFIYVYDLQANKCSLRIPAHK-SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH-------L 231 (409)
Q Consensus 160 ~~~d~~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~ 231 (409)
|...|.+.++|..+.+++..++-.. ..|..+.++ ..+.+|+.-+.|..|+.|+++.....++.......| .
T Consensus 171 GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s-~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk 249 (405)
T KOG1273|consen 171 GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVS-RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNK 249 (405)
T ss_pred ecCcceEEEEecchheeeeeeeechheeeeEEEEe-ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhh
Confidence 9999999999999999998886555 788999998 899999999999999999987433332222211111 1
Q ss_pred cceeEEEEcCCCCeEEEEeC-CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeeccccee
Q 015301 232 EGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR 310 (409)
Q Consensus 232 ~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (409)
.+=.+++|+.+|.+++.++. ...++||.-.. +..++.+.|....
T Consensus 250 ~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~----------------------------------GsLVKILhG~kgE- 294 (405)
T KOG1273|consen 250 LQWKKCCFSGDGEYVCAGSARAHALYIWEKSI----------------------------------GSLVKILHGTKGE- 294 (405)
T ss_pred hhhhheeecCCccEEEeccccceeEEEEecCC----------------------------------cceeeeecCCchh-
Confidence 23357889999999887764 45799999776 4555555554421
Q ss_pred eeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccC
Q 015301 311 TLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS 344 (409)
Q Consensus 311 ~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~ 344 (409)
....+.|.|-...+++- ..|.|+||....
T Consensus 295 ----~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 295 ----ELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred ----heeecccccceeeeeec-cCCceEEEEeec
Confidence 11233455555566665 778999998754
No 148
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.7e-26 Score=204.31 Aligned_cols=292 Identities=17% Similarity=0.283 Sum_probs=213.4
Q ss_pred EEEECCCCC-EEEEE----------eCCCcEEEEEcCCCeee--eeeeecccccceEEEEEeCCCCcE----EEEEecCC
Q 015301 45 TSQFSNDGS-FFVAA----------SQESNIKVYNVDKNWKI--QKDIETKALRWTITDTSLSPDQRF----LVYASICA 107 (409)
Q Consensus 45 ~~~~s~~~~-~l~t~----------~~d~~i~vw~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~----l~~~~~dg 107 (409)
.++|+|++. ++|+| +.+.++-||.++..... .+..........-+.++|.+.+.. ||.|..||
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG 90 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG 90 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence 467888776 44543 23456666665432111 111112223346889999987765 88888999
Q ss_pred EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCeeeeEE--cCCC
Q 015301 108 IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCSLRI--PAHK 184 (409)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~ 184 (409)
.|.+||...-..... .........|.+.|..+.|++. +++|++|+.||.|.|||+.+.+..... ....
T Consensus 91 ~I~ly~p~~~~~~~~---------~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~ 161 (1049)
T KOG0307|consen 91 NIVLYDPASIIANAS---------EEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPP 161 (1049)
T ss_pred ceEEecchhhccCcc---------hHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCc
Confidence 999999876311000 0111122357779999999995 459999999999999999876544433 2245
Q ss_pred CCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccc--ceeEEEEcCCCC-eEEEEeCCC---cEEEe
Q 015301 185 SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE--GITFIDSRRDGR-YFISNGKDQ---TTKLW 258 (409)
Q Consensus 185 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~-~l~~~~~dg---~i~iw 258 (409)
+.|.+++|+.....+|++++.+|.+.|||+| ..+.+..+..+.. .+..+.|+|+.. .+++++.|. .|.+|
T Consensus 162 ~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr----~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlW 237 (1049)
T KOG0307|consen 162 SEIKCLSWNRKVSHILASGSPSGRAVIWDLR----KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLW 237 (1049)
T ss_pred ccceEeccchhhhHHhhccCCCCCceecccc----CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEee
Confidence 7899999997778899999999999999998 4455555544443 477899999864 566666544 69999
Q ss_pred eCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCC-CEEEEEeCCCeE
Q 015301 259 DIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ-KYIYTGSSDNSV 337 (409)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~v 337 (409)
|+|.. ..+++.+.+|. +.+.++.|++.+ .+|++++.|++|
T Consensus 238 DlR~a---------------------------------ssP~k~~~~H~------~GilslsWc~~D~~lllSsgkD~~i 278 (1049)
T KOG0307|consen 238 DLRFA---------------------------------SSPLKILEGHQ------RGILSLSWCPQDPRLLLSSGKDNRI 278 (1049)
T ss_pred ccccc---------------------------------CCchhhhcccc------cceeeeccCCCCchhhhcccCCCCe
Confidence 99873 34567777887 334455666544 899999999999
Q ss_pred EEEEccCCceEEEeccCCcceeeeEEecCcC-eEEeecCCCeEEEEecCCCc
Q 015301 338 YIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 338 ~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~ 388 (409)
.+|+.++++.+..+......+..+.|+|... .++.++.||.|-|+.+.+..
T Consensus 279 i~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 279 ICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999999999998888999999999887 88888999999999998765
No 149
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=6.2e-25 Score=171.23 Aligned_cols=214 Identities=17% Similarity=0.247 Sum_probs=167.5
Q ss_pred eeecCCCCeEEEEECCCC--CEEEEEeCCCcEEEEEcCCC-------------eeeeeeeecccccceEEEEEeCCC-Cc
Q 015301 35 KVDGMNSRVYTSQFSNDG--SFFVAASQESNIKVYNVDKN-------------WKIQKDIETKALRWTITDTSLSPD-QR 98 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~--~~l~t~~~d~~i~vw~~~~~-------------~~~~~~~~~~~~~~~v~~~~~s~~-~~ 98 (409)
..-+|.+.|+.+.-++-+ .+.|+=+..|.|+||++... .....+....+|...=++++|||- ..
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 455788888888887765 45566678899999997532 122334556677778899999994 33
Q ss_pred EEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCee-
Q 015301 99 FLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKC- 176 (409)
Q Consensus 99 ~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~- 176 (409)
.|++|..-+.|++|...++.-..-.... .+|...|-.++|||. ...|++|+.||+|+|||++.+..
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf------------~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~ 293 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPF------------TGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK 293 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccc------------cccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc
Confidence 5888888899999999886543222211 246668999999994 45788999999999999998732
Q ss_pred -eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC-CCeEEEEeCCCc
Q 015301 177 -SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD-GRYFISNGKDQT 254 (409)
Q Consensus 177 -~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 254 (409)
....+.|.+.|+.+.|+ ....+|++|+.||+++|||+|.+. .+.++..+.-|..+|+++.|+|. ...|++++.|..
T Consensus 294 ~~~~~kAh~sDVNVISWn-r~~~lLasG~DdGt~~iwDLR~~~-~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Q 371 (440)
T KOG0302|consen 294 AAVSTKAHNSDVNVISWN-RREPLLASGGDDGTLSIWDLRQFK-SGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQ 371 (440)
T ss_pred ceeEeeccCCceeeEEcc-CCcceeeecCCCceEEEEEhhhcc-CCCcceeEEeccCCeeEEEeccccCceEEeccCCCc
Confidence 22337899999999999 666699999999999999999754 44788899999999999999995 457888899999
Q ss_pred EEEeeCCC
Q 015301 255 TKLWDIRK 262 (409)
Q Consensus 255 i~iwd~~~ 262 (409)
|.+||+.-
T Consensus 372 itiWDlsv 379 (440)
T KOG0302|consen 372 ITIWDLSV 379 (440)
T ss_pred EEEEEeec
Confidence 99999865
No 150
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.94 E-value=1.7e-24 Score=170.43 Aligned_cols=321 Identities=15% Similarity=0.165 Sum_probs=207.5
Q ss_pred CCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCe------eeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEE
Q 015301 40 NSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNW------KIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (409)
Q Consensus 40 ~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w 112 (409)
..+|..+.|.+++. .||||+.|..|++|.++.+. .+.-...+..|...|+++.|+|+|..||+|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46899999998877 99999999999999986542 334445567788899999999999999999999999999
Q ss_pred EcCCCccccccc-eeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEE
Q 015301 113 DVGSSARESLAN-VTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC 191 (409)
Q Consensus 113 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 191 (409)
....-....... ...............+|...|..++|+|++.++++++.|..+++||+..|.....+..|...+..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 876311100000 0000001112222235777899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCcEEEEeeCCCeEEEecccccccCCceeeee-------------------ecccc----ceeEEEEcCCCCeEEE
Q 015301 192 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-------------------MGHLE----GITFIDSRRDGRYFIS 248 (409)
Q Consensus 192 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------------~~~~~----~v~~~~~~~~~~~l~~ 248 (409)
|. |-+.++++-+.|...+.+.+. ........ .-|.+ -...++|+|+|.++++
T Consensus 173 wD-pl~qyv~s~s~dr~~~~~~~~----~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvt 247 (434)
T KOG1009|consen 173 WD-PLNQYVASKSSDRHPEGFSAK----LKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVT 247 (434)
T ss_pred cc-hhhhhhhhhccCcccceeeee----eeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEc
Confidence 99 788899998888876666643 11111000 00111 2345788999998887
Q ss_pred EeC----CCcE-----EEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEee
Q 015301 249 NGK----DQTT-----KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSP 319 (409)
Q Consensus 249 ~~~----dg~i-----~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (409)
... .+.+ ++|+-.....+........... +..........+..... . ...+.
T Consensus 248 Pag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~--------------lavr~~pVy~elrp~~~--~--~~~~~- 308 (434)
T KOG1009|consen 248 PAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPA--------------LAVRFSPVYYELRPLSS--E--KFLFV- 308 (434)
T ss_pred ccceeeeCCceeeceeEeeccccccCceeecCCCCcce--------------EEEEeeeeEEEeccccc--c--ccccc-
Confidence 542 2222 2222211110000000000000 00000000000000000 0 00111
Q ss_pred eecCCCCEEEEEeCCCeEEEEEccCCceEEEec-cCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 320 EYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD-FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 320 ~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
-|-+..+|+++.+ .|+|||.++.+++.... -|-..|++++|++||.+|+..|.||...+-.++..
T Consensus 309 --lpyrlvfaiAt~~-svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 309 --LPYRLVFAIATKN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred --cccceEEEEeecc-eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 1334456666554 69999999988877664 58899999999999999999999998877666543
No 151
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.9e-25 Score=176.61 Aligned_cols=251 Identities=14% Similarity=0.194 Sum_probs=185.0
Q ss_pred CeEEEEECC-------CCCEEEEEeCCCcEEEEEcCCCeeeee------------------eeecccccceEEEEEeCCC
Q 015301 42 RVYTSQFSN-------DGSFFVAASQESNIKVYNVDKNWKIQK------------------DIETKALRWTITDTSLSPD 96 (409)
Q Consensus 42 ~v~~~~~s~-------~~~~l~t~~~d~~i~vw~~~~~~~~~~------------------~~~~~~~~~~v~~~~~s~~ 96 (409)
.-.|++|-. .|+++|.|+.|..|.|||++-...+.. .....+|+..|.+++|+..
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 345777633 367999999999999999863322111 1123367778888999875
Q ss_pred -CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCC
Q 015301 97 -QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQAN 174 (409)
Q Consensus 97 -~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~ 174 (409)
.+.||+|+.|.+|.+||+.++++..... .|...|.++.|+| ....|++|+.|++|.+.|.+..
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~---------------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSIT---------------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehh---------------hcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 5689999999999999999998765544 2344799999999 5678999999999999999853
Q ss_pred eeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC-CCeEEEEeCCC
Q 015301 175 KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD-GRYFISNGKDQ 253 (409)
Q Consensus 175 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg 253 (409)
......-...+.|..++|.|...+.++++..||+|+-+|+| ..++++..+..|.++|.++++++. ..++++++.|+
T Consensus 320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R---~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~ 396 (463)
T KOG0270|consen 320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR---NPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDK 396 (463)
T ss_pred cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecC---CCCCceeEEEeccCCcceEEecCCCCcceeeccccc
Confidence 32222222467899999998888999999999999999998 355899999999999999999874 45788999999
Q ss_pred cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCC-CCEEEEEe
Q 015301 254 TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA-QKYIYTGS 332 (409)
Q Consensus 254 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~ 332 (409)
.|++|++...... ....|...... ..+.++.|+ .-+++.|+
T Consensus 397 ~Vklw~~~~~~~~-----------------------------------~v~~~~~~~~r---l~c~~~~~~~a~~la~GG 438 (463)
T KOG0270|consen 397 VVKLWKFDVDSPK-----------------------------------SVKEHSFKLGR---LHCFALDPDVAFTLAFGG 438 (463)
T ss_pred eEEEEeecCCCCc-----------------------------------ccccccccccc---eeecccCCCcceEEEecC
Confidence 9999998763221 11111111111 122233333 24678888
Q ss_pred CCCeEEEEEccCCceE
Q 015301 333 SDNSVYIYDLVSGAQV 348 (409)
Q Consensus 333 ~dg~v~i~d~~~~~~~ 348 (409)
..+.++|||+.+...+
T Consensus 439 ~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 439 EKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccceEEEeecccChhH
Confidence 8889999999876543
No 152
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.6e-24 Score=170.16 Aligned_cols=304 Identities=16% Similarity=0.152 Sum_probs=217.9
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe--ee--eeeeecccccceEEEEEeCCCCcEEEEEecCCEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW--KI--QKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~--~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 110 (409)
-+.+|.+.|+++.||.++++||+|+.|..+++|+++.-. .. ..-.....|...|.|++|...+++|.+|..+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 567999999999999999999999999999999986431 11 11122345667899999999999999999999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCe-eee--EEcCCCCCe
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK-CSL--RIPAHKSDV 187 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~--~~~~~~~~v 187 (409)
.-|+++.+......... ..+.|+.+..+|..+.|++.+.++.|.+||.+... ... .........
T Consensus 131 ~HDiEt~qsi~V~~~~~-------------~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F 197 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENN-------------NRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNF 197 (609)
T ss_pred eeecccceeeeeecccC-------------cccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccc
Confidence 99999887654443322 23369999999999999999999999999997654 221 122234567
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeee---eeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCc
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV---LMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS 264 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 264 (409)
..+.|+|....+|++.+..+-+-+||.|.....--.... +......-.++.|+|+|..|++.-....-.+||+-+..
T Consensus 198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R 277 (609)
T KOG4227|consen 198 YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR 277 (609)
T ss_pred eeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc
Confidence 788999888999999999999999998832111111111 11111223567899999999988777777788876632
Q ss_pred ccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccC
Q 015301 265 SNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS 344 (409)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~ 344 (409)
+. +..+...+......+.+-+.+|-.| .-+++|+.+-.|++|.+..
T Consensus 278 ~~---------------------------------V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 278 CF---------------------------------VLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPR 323 (609)
T ss_pred ce---------------------------------eEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCC
Confidence 21 1111111111111222333444443 3499999999999998742
Q ss_pred C-----------------------ceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 345 G-----------------------AQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 345 ~-----------------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
. +.+..+++|..-++.+.|+|...+|++.+-.+.+++|.--
T Consensus 324 ~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 324 ANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred CccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 1 1245678999999999999999999999999999999653
No 153
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.94 E-value=1.3e-24 Score=180.98 Aligned_cols=134 Identities=15% Similarity=0.219 Sum_probs=101.7
Q ss_pred eeecCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCee--e-eeeeecccccceEEEEEeCCCCcEEEEEecCCEEE
Q 015301 35 KVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWK--I-QKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~--~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 110 (409)
.|.+|.+.|+.+.|+| +..+||||+.|..|+||.+..+-. + .......+..-.|.++.|+|...-|+..+..|.++
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~ 153 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVY 153 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEE
Confidence 6789999999999999 456789999999999999985421 1 11222333445789999999766666667789999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCC-CeeeeEEcCC
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA-NKCSLRIPAH 183 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~ 183 (409)
+||+.+++..... .+|..-|.++.|+.||.+|++++.|..|+|||.+. +++++..++|
T Consensus 154 i~D~stqk~~~el---------------~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 154 ITDISTQKTAVEL---------------SGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred EEEcccCceeecc---------------cCCchhhhccccccCCceEeeecCCcceEEeCCccCCCcccccccc
Confidence 9999987653222 24555799999999999999999999999999863 4444444444
No 154
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.94 E-value=1.7e-24 Score=174.86 Aligned_cols=284 Identities=13% Similarity=0.169 Sum_probs=203.9
Q ss_pred eEEEEeeecCCCceeecCC--CCeEEEEECCCCCEEEE--EeCCCcEEEEEcCCCee-eeeeeecccccceEEEEEeCCC
Q 015301 22 HVLSRYLPVNGPWKVDGMN--SRVYTSQFSNDGSFFVA--ASQESNIKVYNVDKNWK-IQKDIETKALRWTITDTSLSPD 96 (409)
Q Consensus 22 ~~~~~~~~~~~~~~l~~h~--~~v~~~~~s~~~~~l~t--~~~d~~i~vw~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~ 96 (409)
..++++......-.+..|+ ..|.++.|+.... |++ .+.|..+++|.-..... +.......+. .-.|++....
T Consensus 14 ~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~ 90 (673)
T KOG4378|consen 14 TKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQ 90 (673)
T ss_pred eEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhc
Confidence 3444444433333333333 3488999987664 444 45678899998654411 1111111111 2334444444
Q ss_pred CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCee
Q 015301 97 QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC 176 (409)
Q Consensus 97 ~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 176 (409)
..++++|+..+.|+|||++...+.... .+|...|+++.++....+|++++..|.|.|..+.++..
T Consensus 91 S~y~~sgG~~~~Vkiwdl~~kl~hr~l---------------kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~ 155 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLRAKLIHRFL---------------KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK 155 (673)
T ss_pred ceeeeccCcCceeeehhhHHHHHhhhc---------------cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc
Confidence 589999999999999999854432222 25666899999999999999999999999999999887
Q ss_pred eeEEcCC-CCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC-CCeEEEEeCCCc
Q 015301 177 SLRIPAH-KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD-GRYFISNGKDQT 254 (409)
Q Consensus 177 ~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 254 (409)
...+... ...|.-+.|+|....+|.+++.+|.|.+||+. ...........|..+...++|+|. ..+|++.+.|..
T Consensus 156 tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~---g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk 232 (673)
T KOG4378|consen 156 TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ---GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK 232 (673)
T ss_pred ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEecc---CCCcccchhhhccCCcCcceecCCccceEEEecccce
Confidence 7777544 34556899997777788899999999999974 233344556779999999999995 457888999999
Q ss_pred EEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC
Q 015301 255 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD 334 (409)
Q Consensus 255 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 334 (409)
|.+||++... ....+.. ......++|+++|.+|++|+..
T Consensus 233 i~~yD~~s~~----------------------------------s~~~l~y-------~~Plstvaf~~~G~~L~aG~s~ 271 (673)
T KOG4378|consen 233 INIYDIRSQA----------------------------------STDRLTY-------SHPLSTVAFSECGTYLCAGNSK 271 (673)
T ss_pred EEEeeccccc----------------------------------ccceeee-------cCCcceeeecCCceEEEeecCC
Confidence 9999998622 1111111 1223466899999999999999
Q ss_pred CeEEEEEccCC-ceEEEeccCCcceeeeEEecCc
Q 015301 335 NSVYIYDLVSG-AQVAKLDFHNAPVRDCCWHPIY 367 (409)
Q Consensus 335 g~v~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~ 367 (409)
|.|..||++.. .++..+..|...|++++|-|.-
T Consensus 272 G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 272 GELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99999999864 6789999999999999998753
No 155
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.94 E-value=2.6e-25 Score=165.22 Aligned_cols=299 Identities=15% Similarity=0.151 Sum_probs=202.7
Q ss_pred eecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCC
Q 015301 28 LPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA 107 (409)
Q Consensus 28 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 107 (409)
.|+.+.+.|.+|.+.|+++.|-.+++ |.+|..-|.|.+|++.+......... .+...|+.+.--|+ ..|.+-+.|+
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~--~g~~~it~lq~~p~-d~l~tqgRd~ 77 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL--FGRLFITNLQSIPN-DSLDTQGRDP 77 (323)
T ss_pred CCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh--hccceeeceeecCC-cchhhcCCCc
Confidence 35667789999999999999998776 88999999999999988744433221 24457888888887 5688889999
Q ss_pred EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-----CCC----eEEEEEec-CeEEEEECCCCeee
Q 015301 108 IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-----DGQ----ELVAAGSD-NFIYVYDLQANKCS 177 (409)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~----~l~~~~~d-~~i~v~d~~~~~~~ 177 (409)
.+.+|++..........+ .++++.|.+ +++ .++.-+.. ..+.+-|......+
T Consensus 78 ~L~lw~ia~s~~i~i~Si------------------~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv 139 (323)
T KOG0322|consen 78 LLILWTIAYSAFISIHSI------------------VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQV 139 (323)
T ss_pred eEEEEEccCcceEEEeee------------------eccccccccceeccCCCcchhheecCCcccchhhhhccCcccee
Confidence 999999987554332221 244444433 111 11111110 01222232222222
Q ss_pred eEE----cCCCCCeEEEEEeCCCC--cEEEEeeCCCeEEEeccccc------ccCCceeeeeeccccceeEEEEcCCCCe
Q 015301 178 LRI----PAHKSDVNTVCFADETG--HLIFSGSDDSLCKVWDRRCF------ISKGRANGVLMGHLEGITFIDSRRDGRY 245 (409)
Q Consensus 178 ~~~----~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 245 (409)
... .+..+.+.+..+....+ -++++|.++|.+.+||+... ....+.......|..+|.++.+.+.-..
T Consensus 140 ~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r 219 (323)
T KOG0322|consen 140 QIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR 219 (323)
T ss_pred EccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC
Confidence 211 12345677766542333 35678889999999997521 0111344455679999999999886666
Q ss_pred EEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCC
Q 015301 246 FISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ 325 (409)
Q Consensus 246 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 325 (409)
=++++.+..+..|++.......+. .....++. ..+....+-||+
T Consensus 220 Gisgga~dkl~~~Sl~~s~gslq~----------------------------~~e~~lkn--------pGv~gvrIRpD~ 263 (323)
T KOG0322|consen 220 GISGGADDKLVMYSLNHSTGSLQI----------------------------RKEITLKN--------PGVSGVRIRPDG 263 (323)
T ss_pred CcCCCccccceeeeeccccCcccc----------------------------cceEEecC--------CCccceEEccCC
Confidence 677888888999998752111100 00011110 112233567899
Q ss_pred CEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 326 KYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 326 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
+.+|+++-|++|+||+.++.+++..++-|...|++++|+|+...+|+++.|++|.+|++
T Consensus 264 KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 264 KILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999999999999999999999999999999999999986
No 156
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.4e-23 Score=160.30 Aligned_cols=279 Identities=16% Similarity=0.174 Sum_probs=192.0
Q ss_pred ceeeEEecCceeEeeccceEEEEeeecCCCceeecC--------CCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCee
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGM--------NSRVYTSQFSNDGSFFVAAS-QESNIKVYNVDKNWK 74 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h--------~~~v~~~~~s~~~~~l~t~~-~d~~i~vw~~~~~~~ 74 (409)
..+++||.||+++++.+.+...+++.... +.++.| -+.-+.+.|+||-+-++... ...++++|.+...+.
T Consensus 89 vt~~~FsSdGK~lat~~~Dr~Ir~w~~~D-F~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d 167 (420)
T KOG2096|consen 89 VTDVAFSSDGKKLATISGDRSIRLWDVRD-FENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD 167 (420)
T ss_pred eeeeEEcCCCceeEEEeCCceEEEEecch-hhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeeccc
Confidence 56899999999999977776666655443 333333 24568899999988665544 456799998753311
Q ss_pred ---eee------eeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceee
Q 015301 75 ---IQK------DIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGI 145 (409)
Q Consensus 75 ---~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 145 (409)
... ..-...|.-.|..+-....+++|++++.|..|.+|++. ++......... ..-
T Consensus 168 G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq---------------~~n 231 (420)
T KOG2096|consen 168 GSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ---------------SSN 231 (420)
T ss_pred CCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc---------------ccc
Confidence 000 01123355567778888889999999999999999998 33322221111 135
Q ss_pred EEEEEcCCCCeEEEEEecCeEEEEECC---CC-----eeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccccc
Q 015301 146 FSVKFSTDGQELVAAGSDNFIYVYDLQ---AN-----KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217 (409)
Q Consensus 146 ~~~~~~~~~~~l~~~~~d~~i~v~d~~---~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 217 (409)
+..+.+|+|+++++++....|++|.+- .| ..+..+++|.+.|..++|+ ++...+++.+.||++++||....
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs-n~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS-NSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeC-CCcceeEEEecCCcEEEeeccce
Confidence 668899999999999999999999863 22 2345679999999999999 89999999999999999997532
Q ss_pred ccCCceeeeee-------ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccce
Q 015301 218 ISKGRANGVLM-------GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYAR 290 (409)
Q Consensus 218 ~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (409)
...++....++ ...+....+.++|+|+.|+.+.. ..++++..++++...
T Consensus 311 Y~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~----------------------- 366 (420)
T KOG2096|consen 311 YEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYP----------------------- 366 (420)
T ss_pred EecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccch-----------------------
Confidence 22222222221 11233347899999998877654 469999887733221
Q ss_pred eccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEE
Q 015301 291 RLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d 341 (409)
.++ .....++.+++|+++|+++++++ |..++++.
T Consensus 367 -----------~~e-----~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 367 -----------ELE-----DIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred -----------hHH-----HhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 111 11124566778999999999986 56677765
No 157
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.93 E-value=2.9e-24 Score=179.95 Aligned_cols=269 Identities=15% Similarity=0.206 Sum_probs=203.8
Q ss_pred eeeEEecCcee--EeeccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecc
Q 015301 5 REVNYSGRGRF--SAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK 82 (409)
Q Consensus 5 ~~~~~s~dg~~--~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~ 82 (409)
.-++|-|||.- +++++...+.+.......++|+||.+.|+|++|+.||+.+|+|+.|..|.+|+-.-...+ ..
T Consensus 16 ~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-----kY 90 (1081)
T KOG1538|consen 16 NDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-----KY 90 (1081)
T ss_pred heeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-----ee
Confidence 45899999964 444555555555455556799999999999999999999999999999999986543222 23
Q ss_pred cccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe
Q 015301 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (409)
.|...|.||.|+|-...|++++-. ..-+|............ ...+.+++|..||++++.|-.
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~ks-----------------s~R~~~CsWtnDGqylalG~~ 152 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHKS-----------------SSRIICCSWTNDGQYLALGMF 152 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhhh-----------------heeEEEeeecCCCcEEEEecc
Confidence 477789999999999999998753 45688776554332221 225899999999999999999
Q ss_pred cCeEEEEECCCCeeeeEEc---CCCCCeEEEEEeCCC----CcEEEEeeCCCeEEEecccccccCCceeeeeecccccee
Q 015301 163 DNFIYVYDLQANKCSLRIP---AHKSDVNTVCFADET----GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 235 (409)
Q Consensus 163 d~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~ 235 (409)
+|+|.+-+- +++....+. +.+++|.+++|+|.. .+.+++..+..++.++.+ .++.+..-+.-.-...
T Consensus 153 nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-----sG~~Igk~r~L~FdP~ 226 (1081)
T KOG1538|consen 153 NGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-----SGKQIGKDRALNFDPC 226 (1081)
T ss_pred CceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-----cceeecccccCCCCch
Confidence 999999874 455444443 467899999999643 357888888888888886 4555444444444567
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEE
Q 015301 236 FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRC 315 (409)
Q Consensus 236 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (409)
++.+.++|.+++.|+.|+.+.+|.-+. -.+-+... .-..
T Consensus 227 CisYf~NGEy~LiGGsdk~L~~fTR~G-----------------------------------vrLGTvg~------~D~W 265 (1081)
T KOG1538|consen 227 CISYFTNGEYILLGGSDKQLSLFTRDG-----------------------------------VRLGTVGE------QDSW 265 (1081)
T ss_pred hheeccCCcEEEEccCCCceEEEeecC-----------------------------------eEEeeccc------ccee
Confidence 899999999999999999999996443 11222211 2267
Q ss_pred EEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 316 YFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 316 ~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
+|+++..|++++++.|+.||+|..|++.
T Consensus 266 IWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 266 IWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEEEEccCCceEEEEEccCeeehhhhH
Confidence 8899999999999999999999999874
No 158
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.1e-25 Score=197.45 Aligned_cols=251 Identities=16% Similarity=0.248 Sum_probs=195.2
Q ss_pred CCCeEEEEECCCCCE----EEEEeCCCcEEEEEcCC---CeeeeeeeecccccceEEEEEeCCCCc-EEEEEecCCEEEE
Q 015301 40 NSRVYTSQFSNDGSF----FVAASQESNIKVYNVDK---NWKIQKDIETKALRWTITDTSLSPDQR-FLVYASICAIVNI 111 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~----l~t~~~d~~i~vw~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~~ 111 (409)
..+-+.++|.+.|.. +|.|..||.|.+||... +.....+.....|.+.|..+.|++... .||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 466789999998776 88899999999999875 334444556677889999999999754 9999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCeeeeEEcCCCC--CeE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCSLRIPAHKS--DVN 188 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~--~v~ 188 (409)
||+...+........ .....|.+++|+.. ...|++++.+|.+.|||++..+++..+..+.. .+.
T Consensus 144 WDlnn~~tP~~~~~~-------------~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S 210 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQ-------------APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCS 210 (1049)
T ss_pred eccCCcCCCCCCCCC-------------CCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcccee
Confidence 999886543333211 12336999999874 45678888899999999999888877755543 578
Q ss_pred EEEEeCCCCcEEEEeeCCC---eEEEecccccccCCceeeeeeccccceeEEEEcCCC-CeEEEEeCCCcEEEeeCCCCc
Q 015301 189 TVCFADETGHLIFSGSDDS---LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG-RYFISNGKDQTTKLWDIRKMS 264 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 264 (409)
.++|+|.+...+++++.|. .|.+||+| .....++.+.+|...|.++.|++.+ ++|++++.|+.|.+|+.++.+
T Consensus 211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR---~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 211 VLAWHPDHATQLLVASGDDSAPVIQLWDLR---FASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE 287 (1049)
T ss_pred eeeeCCCCceeeeeecCCCCCceeEeeccc---ccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce
Confidence 8999988888888888664 59999998 3556777788999999999999866 889999999999999998833
Q ss_pred ccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCC-EEEEEeCCCeEEEEEcc
Q 015301 265 SNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK-YIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~v~i~d~~ 343 (409)
.+..+.... ..+|.+.|+|... .+++++.||.|.||.+.
T Consensus 288 ----------------------------------vl~~~p~~~------nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 288 ----------------------------------VLGELPAQG------NWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred ----------------------------------EeeecCCCC------cceeeeeecCCCcchhhhheeccceeeeeee
Confidence 333333222 3456666776554 88999999999999997
Q ss_pred CCc
Q 015301 344 SGA 346 (409)
Q Consensus 344 ~~~ 346 (409)
...
T Consensus 328 ~~~ 330 (1049)
T KOG0307|consen 328 GTD 330 (1049)
T ss_pred cCC
Confidence 654
No 159
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=6.7e-24 Score=176.75 Aligned_cols=205 Identities=18% Similarity=0.194 Sum_probs=152.1
Q ss_pred eeeEEEEEcC-CCCeEEEEEecCeEEEEECCCC-------eeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecc
Q 015301 143 FGIFSVKFST-DGQELVAAGSDNFIYVYDLQAN-------KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDR 214 (409)
Q Consensus 143 ~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 214 (409)
..|+.+.|.| |...|++++.||.|++|.+..+ .+...+..|...|+++.|+|--.+.|++++.|-+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 3588999999 7788999999999999998654 3455678899999999999888899999999999999997
Q ss_pred cccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccc
Q 015301 215 RCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 294 (409)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (409)
+ .......+.+|.+.|..++|+|+|+.+++.+.||+|++|+-++.+.....
T Consensus 708 ~----~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~E------------------------- 758 (1012)
T KOG1445|consen 708 A----NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYE------------------------- 758 (1012)
T ss_pred h----hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcccc-------------------------
Confidence 6 77788889999999999999999999999999999999998875432221
Q ss_pred cCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC----CeEEEEEccCC--ceEEEeccCCc-ceeeeEEecCc
Q 015301 295 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD----NSVYIYDLVSG--AQVAKLDFHNA-PVRDCCWHPIY 367 (409)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d----g~v~i~d~~~~--~~~~~~~~~~~-~v~~~~~s~~~ 367 (409)
-++... ....+..| .-+|+++++.+.| ..|.+||..+. .++.+..-... .+.--.+.+|.
T Consensus 759 --------g~gpvg-tRgARi~w----acdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds 825 (1012)
T KOG1445|consen 759 --------GKGPVG-TRGARILW----ACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDS 825 (1012)
T ss_pred --------CCCCcc-CcceeEEE----EecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCC
Confidence 111111 11112233 3368888887765 56889987654 34443321111 11222455666
Q ss_pred C-eEEeecCCCeEEEEecCCCcc
Q 015301 368 P-MLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 368 ~-~l~s~~~dg~i~iw~~~~~~~ 389 (409)
. ++++|-.|..|++|++-....
T Consensus 826 ~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 826 NVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred ceEEEecCCCceEEEEEecCCCc
Confidence 6 677888899999999865443
No 160
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=4.2e-24 Score=177.65 Aligned_cols=267 Identities=21% Similarity=0.254 Sum_probs=186.3
Q ss_pred EEEEeCC---CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCe
Q 015301 89 TDTSLSP---DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF 165 (409)
Q Consensus 89 ~~~~~s~---~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 165 (409)
.+..|++ ....|+.+..||.|.++|........... -......|...|..+.|.|....|++++.|.+
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~---------~lk~~~aH~nAifDl~wapge~~lVsasGDsT 123 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEER---------QLKKPLAHKNAIFDLKWAPGESLLVSASGDST 123 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhh---------hhcccccccceeEeeccCCCceeEEEccCCce
Confidence 3356655 35678999999999999987654431111 00112356778999999997778999999999
Q ss_pred EEEEECCCCeeeeE--EcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccc--------------cCC--------
Q 015301 166 IYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI--------------SKG-------- 221 (409)
Q Consensus 166 i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------~~~-------- 221 (409)
+++||+++.++... +.+|...|.+++|.|.+...|++|+.||.|.|||+|... .++
T Consensus 124 ~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~ 203 (720)
T KOG0321|consen 124 IRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPL 203 (720)
T ss_pred eeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchh
Confidence 99999999988876 789999999999999999999999999999999998321 000
Q ss_pred -ceeeeeeccccceeE---EEEcCCCCeEEEEeC-CCcEEEeeCCCCcccccccccccccccccccccccccceeccccC
Q 015301 222 -RANGVLMGHLEGITF---IDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPH 296 (409)
Q Consensus 222 -~~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (409)
+.......+...|.+ +.+..|...|++++. |+.|++||+++..........
T Consensus 204 ~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~------------------------ 259 (720)
T KOG0321|consen 204 KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPR------------------------ 259 (720)
T ss_pred hccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCC------------------------
Confidence 111112234444555 556678889999888 999999999986654433211
Q ss_pred ccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc--eEEEeccCCcc--eeeeEEecCcCeEEe
Q 015301 297 DQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA--QVAKLDFHNAP--VRDCCWHPIYPMLIS 372 (409)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~--~~~~~~~~~~~--v~~~~~s~~~~~l~s 372 (409)
....+..+. .-...+.++..+..|.+|++.+.|+.|++|++.+.. ++..+.++... -..-..+||+.+|++
T Consensus 260 --~~~~~~t~s---krs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~S 334 (720)
T KOG0321|consen 260 --GSDKYPTHS---KRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLS 334 (720)
T ss_pred --cccCccCcc---cceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEec
Confidence 111111111 001122344455568889888889999999997653 44555544221 112256899999999
Q ss_pred ecCCCeEEEEecCCCcccCCC
Q 015301 373 SSWDCNIVRWEIPGIGEAPLP 393 (409)
Q Consensus 373 ~~~dg~i~iw~~~~~~~~~~~ 393 (409)
|+.|...++|.+...+..+..
T Consensus 335 gSsd~~ayiw~vs~~e~~~~~ 355 (720)
T KOG0321|consen 335 GSSDEQAYIWVVSSPEAPPAL 355 (720)
T ss_pred cCCCcceeeeeecCccCChhh
Confidence 999999999999987766443
No 161
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.93 E-value=9.9e-24 Score=158.94 Aligned_cols=285 Identities=18% Similarity=0.230 Sum_probs=200.2
Q ss_pred eeecCCCCeEEEEECCCCC-EEEEEeCC-------CcEEEEEcCCCeeee------eeeec-ccccceEEEEEeCCCCcE
Q 015301 35 KVDGMNSRVYTSQFSNDGS-FFVAASQE-------SNIKVYNVDKNWKIQ------KDIET-KALRWTITDTSLSPDQRF 99 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~-~l~t~~~d-------~~i~vw~~~~~~~~~------~~~~~-~~~~~~v~~~~~s~~~~~ 99 (409)
.+..|.+.|..++-+|-.+ .|+|+-.+ -.+-||.+....... ....+ ..+-+.|.|+.|.|++..
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence 6778999999999999554 55665432 247899987653221 11111 134458999999999999
Q ss_pred EEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC--CCCeEEEEEecCeEEEEECCCCeee
Q 015301 100 LVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--DGQELVAAGSDNFIYVYDLQANKCS 177 (409)
Q Consensus 100 l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~ 177 (409)
|++-. |..|.+|++....... ..... +...++....++-+|+| +++.+++. .|+++..||+++.+..
T Consensus 138 lasm~-dn~i~l~~l~ess~~v-aev~s--------s~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 138 LASMD-DNNIVLWSLDESSKIV-AEVLS--------SESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKN 206 (370)
T ss_pred eEEec-cCceEEEEcccCcchh-eeecc--------cccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhh
Confidence 98776 8889999998775421 11111 11112344688889999 78877766 4899999999998877
Q ss_pred eEE-cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC-CCeEEEEeCCCcE
Q 015301 178 LRI-PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD-GRYFISNGKDQTT 255 (409)
Q Consensus 178 ~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i 255 (409)
..+ ..|...|..+.|+|....+|++++.||.|++||.| ....++..+.+|...|.++.|+|. .+++++++.|..|
T Consensus 207 ~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R---~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V 283 (370)
T KOG1007|consen 207 NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR---KTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAV 283 (370)
T ss_pred cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc---CCCccccccCCCceEEEEEEecCccceEEEecCCCcee
Confidence 766 56888999999998778899999999999999998 467788899999999999999995 4578899999999
Q ss_pred EEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC
Q 015301 256 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 335 (409)
Q Consensus 256 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 335 (409)
.+|....-...+...... .......+. ..-
T Consensus 284 ~Lsca~svSSE~qi~~~~-------------------------dese~e~~d-------------------------see 313 (370)
T KOG1007|consen 284 NLSCASSVSSEQQIEFED-------------------------DESESEDED-------------------------SEE 313 (370)
T ss_pred EEEecccccccccccccc-------------------------ccccCcchh-------------------------hHH
Confidence 999876533222111000 000000000 000
Q ss_pred eEEEEEccCCceEEEeccCCcceeeeEEecCcC-eEEeecCCCeEEEEecCC
Q 015301 336 SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 336 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~ 386 (409)
+++ -+ ....+.++..|...|.+++||.-.. .+|+-+.||.+.|=+++.
T Consensus 314 r~k--pL-~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 314 RVK--PL-QDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred hcc--cc-cccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 111 11 1223567778999999999998777 667789999999876653
No 162
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=4.3e-24 Score=166.62 Aligned_cols=241 Identities=13% Similarity=0.197 Sum_probs=175.9
Q ss_pred eeeEEecCceeEee---------ccceEEEEeeecCCCceeecCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCee
Q 015301 5 REVNYSGRGRFSAA---------DSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWK 74 (409)
Q Consensus 5 ~~~~~s~dg~~~~~---------~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~~~ 74 (409)
-|..||..|+.-.. .............+.+++.+|.+.=+.++|||-. ..|++|.--+.|++|...++.-
T Consensus 167 ~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W 246 (440)
T KOG0302|consen 167 LCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSW 246 (440)
T ss_pred eeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCce
Confidence 35667777763221 1111222334455667999999999999999932 2477887778899999988743
Q ss_pred eeeeeecccccceEEEEEeCCC-CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC
Q 015301 75 IQKDIETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD 153 (409)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 153 (409)
..-...+.+|...|..+.|||. ...|++|+.||+|+|||++.+........ +.|...|+.+.|+..
T Consensus 247 ~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-------------kAh~sDVNVISWnr~ 313 (440)
T KOG0302|consen 247 KVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-------------KAHNSDVNVISWNRR 313 (440)
T ss_pred eecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-------------eccCCceeeEEccCC
Confidence 3334455668889999999995 57889999999999999998754332222 234557999999998
Q ss_pred CCeEEEEEecCeEEEEECCC---CeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccccccc---------CC
Q 015301 154 GQELVAAGSDNFIYVYDLQA---NKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFIS---------KG 221 (409)
Q Consensus 154 ~~~l~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---------~~ 221 (409)
-.+|++|+.||++.|||+++ ++++..++.|..+|+++.|+|.+...|++++.|.+|.+||+..... .+
T Consensus 314 ~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~ 393 (440)
T KOG0302|consen 314 EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEG 393 (440)
T ss_pred cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccc
Confidence 88999999999999999975 5677889999999999999998899999999999999999862111 00
Q ss_pred ---ceeeeeecc--ccceeEEEEcCC-CCeEEEEeCCCcEEEee
Q 015301 222 ---RANGVLMGH--LEGITFIDSRRD-GRYFISNGKDQTTKLWD 259 (409)
Q Consensus 222 ---~~~~~~~~~--~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd 259 (409)
.+.+.+.-| ...+..+.|++. ..++++.+.|| +.||.
T Consensus 394 L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 394 LQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred hhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 111122234 335777888875 34788888888 45553
No 163
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=4.8e-23 Score=181.02 Aligned_cols=310 Identities=20% Similarity=0.208 Sum_probs=218.2
Q ss_pred eecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC--CCcEEEEEecCCEEEEEE
Q 015301 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP--DQRFLVYASICAIVNIVD 113 (409)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~~w~ 113 (409)
+.+...+-..+.|+|-...++++...-.|+|||.+.+..+............|+.+.+-. |...+++|+.||.|+||+
T Consensus 1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence 344555677888999999999998778899999999877665554444556799998865 467899999999999997
Q ss_pred cCCCc--cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcC-CCCCeEEE
Q 015301 114 VGSSA--RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA-HKSDVNTV 190 (409)
Q Consensus 114 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~v~~~ 190 (409)
--... ............+... +..+.=.-++|.....+|++++.-..|+|||......+..++. ....|+++
T Consensus 1140 ~y~~~~~~~eLVTaw~~Ls~~~~-----~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaL 1214 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLP-----GARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTAL 1214 (1387)
T ss_pred ccccccCCceeEEeeccccccCc-----cCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceee
Confidence 54332 1111111111111111 1111114467887666777777788999999998887777643 45567777
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccc--eeEEEEcCCCC-eEEEEeCCCcEEEeeCCCCcccc
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEG--ITFIDSRRDGR-YFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
.-+-..++++++|..||.|++||.|... ....+...+.|+.. |..+.+.+.|- .|++|+.||.|++||++......
T Consensus 1215 S~~~~~gn~i~AGfaDGsvRvyD~R~a~-~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~ 1293 (1387)
T KOG1517|consen 1215 SADLVHGNIIAAGFADGSVRVYDRRMAP-PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET 1293 (1387)
T ss_pred cccccCCceEEEeecCCceEEeecccCC-ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc
Confidence 7665678999999999999999998432 23456677888877 99999988665 49999999999999999832111
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~ 347 (409)
. .....|.... ....++..+++...+|+|+. +.|+||++ .|+.
T Consensus 1294 ~--------------------------------~~iv~~~~yG---s~lTal~VH~hapiiAsGs~-q~ikIy~~-~G~~ 1336 (1387)
T KOG1517|consen 1294 F--------------------------------LTIVAHWEYG---SALTALTVHEHAPIIASGSA-QLIKIYSL-SGEQ 1336 (1387)
T ss_pred c--------------------------------ceeeeccccC---ccceeeeeccCCCeeeecCc-ceEEEEec-Chhh
Confidence 0 1111111000 01334566777889999998 99999998 4555
Q ss_pred EEEeccC-------CcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 348 VAKLDFH-------NAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 348 ~~~~~~~-------~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
+..++.+ .+.+.+++|+|..-+||+|+.|..|.||..+...
T Consensus 1337 l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1337 LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 5544432 3467999999998899999999999999877643
No 164
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2e-24 Score=173.96 Aligned_cols=319 Identities=17% Similarity=0.223 Sum_probs=236.0
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC--CcEEEEEecCCEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD--QRFLVYASICAIVNI 111 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~~ 111 (409)
..|.+|.+.|..+.|...|..|++|+.|..|.+||...+..... -..+|...|....|-|. ...+++++.||++++
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceeccccCceee
Confidence 47889999999999999999999999999999999987754443 24566667888888884 578999999999998
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEEEecCeEEEEECCCCeeeeEE---cCCCC--
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKCSLRI---PAHKS-- 185 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~-- 185 (409)
=.+............ ..|.++|.-++.-|+. ..|.+++.|+.+.-+|+.++.+...+ ..+..
T Consensus 214 s~i~~t~~~e~t~rl------------~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~ 281 (559)
T KOG1334|consen 214 SEILETGYVENTKRL------------APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKER 281 (559)
T ss_pred eeeccccceecceec------------ccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccc
Confidence 876544432222211 2456689999999854 46889999999999999877654433 22333
Q ss_pred -CeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCC--ceeeeee------ccccceeEEEEcCCCCeEEEEeCCCcEE
Q 015301 186 -DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG--RANGVLM------GHLEGITFIDSRRDGRYFISNGKDQTTK 256 (409)
Q Consensus 186 -~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 256 (409)
....++..|.+.+.+++++.|..+++||.|...... ..+..+. .....|++++|+.++.-|+++..|-.|+
T Consensus 282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IY 361 (559)
T KOG1334|consen 282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIY 361 (559)
T ss_pred eeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceE
Confidence 567889998888899999999999999987432221 1112221 2234689999998888788888888899
Q ss_pred EeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCe
Q 015301 257 LWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNS 336 (409)
Q Consensus 257 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~ 336 (409)
++.-............ .......+.+++|....++...- -|.|...|+++|+.-|.
T Consensus 362 LF~~~~~~G~~p~~~s---------------------~~~~~~k~vYKGHrN~~TVKgVN---FfGPrsEyVvSGSDCGh 417 (559)
T KOG1334|consen 362 LFNKSMGDGSEPDPSS---------------------PREQYVKRVYKGHRNSRTVKGVN---FFGPRSEYVVSGSDCGH 417 (559)
T ss_pred EeccccccCCCCCCCc---------------------chhhccchhhcccccccccceee---eccCccceEEecCccce
Confidence 9943321111100000 00112233488998777755443 37788999999999999
Q ss_pred EEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 337 VYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 337 v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
|.||+-.+++.+..+.+...-|+||.=+|--..||++|-|.-|+||...+.+..
T Consensus 418 IFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~ 471 (559)
T KOG1334|consen 418 IFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERA 471 (559)
T ss_pred EEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccccc
Confidence 999999999999999887779999999999999999999999999987554443
No 165
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.1e-22 Score=152.22 Aligned_cols=256 Identities=15% Similarity=0.244 Sum_probs=183.2
Q ss_pred ceeeEEecCceeEeeccceEEEEeee---cCCCc----eeecCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCC--
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYLP---VNGPW----KVDGMNSRVYTSQFSN--DGSFFVAASQESNIKVYNVDKN-- 72 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~---~~~~~----~l~~h~~~v~~~~~s~--~~~~l~t~~~d~~i~vw~~~~~-- 72 (409)
+.++.|.+-|+..++++.+.....+. ....+ ..+.|.+.|..+.|.+ -|+.+|+++.|+++.||.-...
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~ 95 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE 95 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccc
Confidence 56889999999999877664333333 23333 4568999999999954 5899999999999999985311
Q ss_pred ----eeeeeeeecccccceEEEEEeCCC--CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeE
Q 015301 73 ----WKIQKDIETKALRWTITDTSLSPD--QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIF 146 (409)
Q Consensus 73 ----~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 146 (409)
...............|+.+.|.|. |-.||+++.||.+|||+...........+...... .......+..+..
T Consensus 96 ~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~--~~~pp~~~~~~~~ 173 (361)
T KOG2445|consen 96 EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN--VIDPPGKNKQPCF 173 (361)
T ss_pred ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh--ccCCcccccCcce
Confidence 122233334445568999999995 77899999999999998865433222222211111 1111123455788
Q ss_pred EEEEcC---CCCeEEEEEec-----CeEEEEECCCCe----eeeEEcCCCCCeEEEEEeCCCC---cEEEEeeCCCeEEE
Q 015301 147 SVKFST---DGQELVAAGSD-----NFIYVYDLQANK----CSLRIPAHKSDVNTVCFADETG---HLIFSGSDDSLCKV 211 (409)
Q Consensus 147 ~~~~~~---~~~~l~~~~~d-----~~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~dg~i~i 211 (409)
|+.|+| ...+|++|+.+ +.+.||....+. .+.++.+|+.+|++++|.|.-| .+|++++.|| |+|
T Consensus 174 CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I 252 (361)
T KOG2445|consen 174 CVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRI 252 (361)
T ss_pred EEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEE
Confidence 999998 35678888765 478888765432 3456789999999999996444 5899999999 999
Q ss_pred ecccccc----------------cCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 212 WDRRCFI----------------SKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 212 wd~~~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
|.++... -.-+.+..+..|++.|..+.|+-.|..|.+.+.||.|++|...-
T Consensus 253 ~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 253 FKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred EEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 9986210 01123445678999999999999999999999999999997643
No 166
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.5e-23 Score=167.95 Aligned_cols=225 Identities=14% Similarity=0.234 Sum_probs=159.5
Q ss_pred CCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC--CCcEEEEEecCCE
Q 015301 31 NGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP--DQRFLVYASICAI 108 (409)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~ 108 (409)
.....|.||.+-|+|++|+.+|.+|++|++|-.+.|||.-..+.+.. ...+|...|.++.|-| +.+.+++|+.|..
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs--I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS--ISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee--eecccccceeEEeeeccCCCeEEEeccCcce
Confidence 34468999999999999999999999999999999999875544443 3457888999999998 4678899999999
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEEEecCeEEEEECCCCeeee---------
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKCSL--------- 178 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~--------- 178 (409)
|+++|+...+........ .........|...|..++-.|++ ..+.+++.||+|+-+|++......
T Consensus 119 i~lfdl~~~~~~~~d~~~-----~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l 193 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGM-----EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSIL 193 (758)
T ss_pred EEEEecccccccccccCc-----cchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHH
Confidence 999999863321111000 00111112566678999999988 788999999999999997632111
Q ss_pred -EEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccC----Cc----------eeee-eeccc-----------
Q 015301 179 -RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK----GR----------ANGV-LMGHL----------- 231 (409)
Q Consensus 179 -~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~----------~~~~-~~~~~----------- 231 (409)
.+...--...++..+|.+..+|++|+.|-..++||.|..... +. ++.. ..+|.
T Consensus 194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~ 273 (758)
T KOG1310|consen 194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYI 273 (758)
T ss_pred HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccce
Confidence 111122345789999999999999999999999995521110 00 1111 11121
Q ss_pred cceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 232 EGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 232 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
..++-+.|+|+|..|++.-....|+++|+..
T Consensus 274 ~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 274 TCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred eeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 1256678999998877766666799998755
No 167
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=2.2e-23 Score=168.57 Aligned_cols=270 Identities=15% Similarity=0.194 Sum_probs=192.6
Q ss_pred CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE--ecCCEEEEEEcCCCccccccceeceeeeeeeecCC
Q 015301 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA--SICAIVNIVDVGSSARESLANVTEIHKGLDFSADG 138 (409)
Q Consensus 61 d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (409)
...+++||+...+............ .+.++.|+.... |+++ +.|..+++|.-.... ..........
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~p-g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~-~~Vp~~~k~~--------- 78 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEP-GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKT-PEVPRVRKLT--------- 78 (673)
T ss_pred CCceEEeecccccCccccccCCCCC-cceeeeccccce-EEEeecCCceeEEEecccCCC-Cccceeeccc---------
Confidence 3469999998765544443333222 489999987654 5554 467788888654431 1111111000
Q ss_pred CCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccc
Q 015301 139 DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 218 (409)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 218 (409)
...-.|++......++++|+..+.|+|||++...+.+.++.|.+.|+++.|+ ....+|++++..|.|.|..+.
T Consensus 79 ---gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN-~~DeyiAsvs~gGdiiih~~~--- 151 (673)
T KOG4378|consen 79 ---GDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYN-NTDEYIASVSDGGDIIIHGTK--- 151 (673)
T ss_pred ---cchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEec-CCcceeEEeccCCcEEEEecc---
Confidence 0023444444556899999999999999999777777889999999999999 889999999999999999964
Q ss_pred cCCceeeeeecc-ccceeEEEEcCCCCe-EEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccC
Q 015301 219 SKGRANGVLMGH-LEGITFIDSRRDGRY-FISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPH 296 (409)
Q Consensus 219 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (409)
++.....+... ...|.-+.|+|..+. |.+++.+|.|.+||+......
T Consensus 152 -t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~------------------------------ 200 (673)
T KOG4378|consen 152 -TKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI------------------------------ 200 (673)
T ss_pred -cCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc------------------------------
Confidence 44444444433 345668899997664 567888999999999874321
Q ss_pred ccceeeeecccceeeeeEEEEeeeecC-CCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecC
Q 015301 297 DQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSW 375 (409)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 375 (409)
....+.|.. .+..++|+| +..+|++.+.|..|++||....+....+. ...+.+.++|+++|.+|+.|..
T Consensus 201 ---~~~~~~HsA------P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 201 ---FHASEAHSA------PCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred ---cchhhhccC------CcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecC
Confidence 122233432 222335665 45678889999999999998877776665 4668999999999999999999
Q ss_pred CCeEEEEecCCCccc
Q 015301 376 DCNIVRWEIPGIGEA 390 (409)
Q Consensus 376 dg~i~iw~~~~~~~~ 390 (409)
.|.|..||+...+.+
T Consensus 271 ~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 271 KGELIAYDMRSTKAP 285 (673)
T ss_pred CceEEEEecccCCCC
Confidence 999999999876654
No 168
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.92 E-value=5e-23 Score=172.65 Aligned_cols=276 Identities=13% Similarity=0.114 Sum_probs=209.6
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccc
Q 015301 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARES 121 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~ 121 (409)
.|+.++|-|||..|+.+..+ .+.+||...+..+.. .++|...|++++|+.||+.+|+|+.|..|.+|+..-....
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqt---LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L- 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQP---LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL- 88 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccc---cccccceEEEEEEccCCceeccCCCceeEEEeccccccee-
Confidence 79999999999998887644 699999999866554 6778889999999999999999999999999986533221
Q ss_pred ccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEE
Q 015301 122 LANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIF 201 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 201 (409)
+. .|...|.|+.|+|-...|++++-. ..-+|..+... +...+ ....+.+++|. .+|.+++
T Consensus 89 --kY--------------SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~-V~K~k-ss~R~~~CsWt-nDGqyla 148 (1081)
T KOG1538|consen 89 --KY--------------SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS-VSKHK-SSSRIICCSWT-NDGQYLA 148 (1081)
T ss_pred --ee--------------ccCCeeeEeecCchHHHhhhcchh-hccccChhhhh-HHhhh-hheeEEEeeec-CCCcEEE
Confidence 11 244479999999998889988753 46688865443 22222 35678899999 9999999
Q ss_pred EeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC-----CeEEEEeCCCcEEEeeCCCCccccccccccccc
Q 015301 202 SGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG-----RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDY 276 (409)
Q Consensus 202 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 276 (409)
.|-.+|+|.+-+-. .+....+..--+.+++|.+++|+|.. ..+++.....++.+|.+........
T Consensus 149 lG~~nGTIsiRNk~--gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~-------- 218 (1081)
T KOG1538|consen 149 LGMFNGTISIRNKN--GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKD-------- 218 (1081)
T ss_pred EeccCceEEeecCC--CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccc--------
Confidence 99999999998742 12222333334577899999999953 3677777778888887754111000
Q ss_pred ccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCc
Q 015301 277 DWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNA 356 (409)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 356 (409)
....|.. .++.+-++|.+++.|+.|+.+.+|. +.|-.+.++-....
T Consensus 219 ----------------------r~L~FdP-----------~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~ 264 (1081)
T KOG1538|consen 219 ----------------------RALNFDP-----------CCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDS 264 (1081)
T ss_pred ----------------------ccCCCCc-----------hhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccce
Confidence 0001111 1335778999999999999999996 57888888877888
Q ss_pred ceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 357 PVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 357 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
.|+.++..|++++++.|+.||+|-.|++-.
T Consensus 265 WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 265 WIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred eEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 999999999999999999999999999854
No 169
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.91 E-value=5.6e-22 Score=170.61 Aligned_cols=281 Identities=12% Similarity=0.148 Sum_probs=200.0
Q ss_pred CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC-CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCC
Q 015301 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDE 140 (409)
Q Consensus 62 ~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (409)
+.+.||++.........+.... .|.++.|+|. ..+++.|..+|+|.+||+..+....... .......
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s---~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~---------ls~~~~s 289 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPS---EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG---------LSALEVS 289 (555)
T ss_pred ceEEEEecCCCCCceEEEecCC---ceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc---------ccccccc
Confidence 4799999988744444333333 7999999995 5677778899999999998876532111 1222235
Q ss_pred cceeeEEEEEcCCCCe--EEEEEecCeEEEEECCCCeeee------EEc------CCCCCeEEEEEeCCCCcEEEEeeCC
Q 015301 141 DEFGIFSVKFSTDGQE--LVAAGSDNFIYVYDLQANKCSL------RIP------AHKSDVNTVCFADETGHLIFSGSDD 206 (409)
Q Consensus 141 ~~~~v~~~~~~~~~~~--l~~~~~d~~i~v~d~~~~~~~~------~~~------~~~~~v~~~~~~~~~~~~l~~~~~d 206 (409)
|..+++.+.|..+..- |++++.||.|..|+++.-.... ... .....+++++|.+.+.+.+++|+.+
T Consensus 290 h~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~ 369 (555)
T KOG1587|consen 290 HSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEE 369 (555)
T ss_pred CCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCC
Confidence 7778999999875444 9999999999999876433211 011 1234689999998899999999999
Q ss_pred CeEEEecccccccCC----ceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccccc
Q 015301 207 SLCKVWDRRCFISKG----RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRW 282 (409)
Q Consensus 207 g~i~iwd~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (409)
|.|.--+........ +.......|.++|.++.++|=+..++..+.|.+++||.....
T Consensus 370 G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~------------------- 430 (555)
T KOG1587|consen 370 GKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI------------------- 430 (555)
T ss_pred cEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC-------------------
Confidence 999874322111112 234456678899999999997765555555999999987621
Q ss_pred ccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCC-CEEEEEeCCCeEEEEEccC--CceEEEeccCCccee
Q 015301 283 MEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ-KYIYTGSSDNSVYIYDLVS--GAQVAKLDFHNAPVR 359 (409)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~v~i~d~~~--~~~~~~~~~~~~~v~ 359 (409)
..++..+..+. ..++..+|||.. ..++++..||.+.+||+.. .+++.+.+.+....+
T Consensus 431 --------------~~Pl~~~~~~~------~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~ 490 (555)
T KOG1587|consen 431 --------------ASPLLSLDSSP------DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALT 490 (555)
T ss_pred --------------CCcchhhhhcc------ceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccc
Confidence 23333344333 224566777755 5777888899999999965 356666666667778
Q ss_pred eeEEecCcCeEEeecCCCeEEEEecCCCcccCCC
Q 015301 360 DCCWHPIYPMLISSSWDCNIVRWEIPGIGEAPLP 393 (409)
Q Consensus 360 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 393 (409)
.+.|++.|+.|+.|...|.+.+|++......+.+
T Consensus 491 ~~~~s~~g~~lavGd~~G~~~~~~l~~~l~~~~~ 524 (555)
T KOG1587|consen 491 RVRWSPNGKLLAVGDANGTTHILKLSESLAVPSP 524 (555)
T ss_pred eeecCCCCcEEEEecCCCcEEEEEcCchhhccCc
Confidence 8899999999999999999999999865544444
No 170
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=6.9e-21 Score=164.62 Aligned_cols=329 Identities=15% Similarity=0.168 Sum_probs=221.0
Q ss_pred ceeeEEecCceeEee-ccceEEEEeeecCCCc-----eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-Ceeee
Q 015301 4 GREVNYSGRGRFSAA-DSCHVLSRYLPVNGPW-----KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDK-NWKIQ 76 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~-~~~~~~~~~~~~~~~~-----~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~-~~~~~ 76 (409)
.+++.+++.|.|... ........+.+.+... .-..|.-.++|.++||+++++|+|..||.|.+|.--. .....
T Consensus 163 ~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~ 242 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE 242 (792)
T ss_pred CccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc
Confidence 578999999887444 2222222233332211 2235777899999999999999999999999998543 11112
Q ss_pred eeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCe
Q 015301 77 KDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQE 156 (409)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (409)
.....+=|...|.+++|+++|.+|++|+..|.+.+|.+.+++...+.++.. +|..+.++||+.+
T Consensus 243 t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs----------------~I~~i~vS~ds~~ 306 (792)
T KOG1963|consen 243 TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGS----------------PILHIVVSPDSDL 306 (792)
T ss_pred cceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCC----------------eeEEEEEcCCCCe
Confidence 222334455689999999999999999999999999999998655555433 6999999999999
Q ss_pred EEEEEecCeEEEEECCCCeeeeEEcCC-----------CCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceee
Q 015301 157 LVAAGSDNFIYVYDLQANKCSLRIPAH-----------KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG 225 (409)
Q Consensus 157 l~~~~~d~~i~v~d~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 225 (409)
.+....|..|.+....+.+....+.+- .+-.+.++++ |..+.++-.+..|.|.+||+- +...+.
T Consensus 307 ~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id-pr~~~~vln~~~g~vQ~ydl~----td~~i~ 381 (792)
T KOG1963|consen 307 YSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID-PRTNSLVLNGHPGHVQFYDLY----TDSTIY 381 (792)
T ss_pred EEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc-CCCCceeecCCCceEEEEecc----ccceee
Confidence 999999999999988776655444321 3346778888 566777778889999999975 222222
Q ss_pred eee-----------ccccceeEEEEcCCCCeEEEEe--------CC--CcEEEeeCCCCccccccccccccccccccccc
Q 015301 226 VLM-----------GHLEGITFIDSRRDGRYFISNG--------KD--QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME 284 (409)
Q Consensus 226 ~~~-----------~~~~~v~~~~~~~~~~~l~~~~--------~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (409)
.+. .+...++.++.+..|.++++.- .| -.+++|-...........
T Consensus 382 ~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~-------------- 447 (792)
T KOG1963|consen 382 KLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILN-------------- 447 (792)
T ss_pred eEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEE--------------
Confidence 221 1233567777777888888763 22 257778765532211110
Q ss_pred ccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc----------eEEEeccC
Q 015301 285 YPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA----------QVAKLDFH 354 (409)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~----------~~~~~~~~ 354 (409)
......|.. .....++.... .....++++.||.++||-+...+ +...-.-|
T Consensus 448 ---------------T~I~~PH~~--~~vat~~~~~~--rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~ 508 (792)
T KOG1963|consen 448 ---------------TKINNPHGN--AFVATIFLNPT--RSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYH 508 (792)
T ss_pred ---------------EEEecCCCc--eeEEEEEecCc--ccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccc
Confidence 111122322 22222222222 22378999999999999884322 11111237
Q ss_pred CcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 355 NAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 355 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
..++++++|+.||..|+ .+.|+.|.+||..+.
T Consensus 509 k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 509 KTPITALCFSQDGSLLA-VSFDDTITIWDYDTK 540 (792)
T ss_pred cCcccchhhcCCCcEEE-EecCCEEEEecCCCh
Confidence 88999999999996555 557889999999873
No 171
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=2.6e-22 Score=160.56 Aligned_cols=254 Identities=18% Similarity=0.276 Sum_probs=185.1
Q ss_pred cccceEEEEEeCCCC--cEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEE
Q 015301 83 ALRWTITDTSLSPDQ--RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVA 159 (409)
Q Consensus 83 ~~~~~v~~~~~s~~~--~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 159 (409)
-+.++|++++|+|.. +.+|+|...|+|-+||+.+.+....... ....|..+|.++.|+| +-..+++
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~-----------~f~~hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVY-----------LFTPHSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceE-----------EeccCCccccceEecCCChhheee
Confidence 355689999999964 5788899999999999964332211111 1124666899999999 5567999
Q ss_pred EEecCeEEEEECCCCeee--eEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEE
Q 015301 160 AGSDNFIYVYDLQANKCS--LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237 (409)
Q Consensus 160 ~~~d~~i~v~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 237 (409)
.+.||+|++-|++..... ..+.........+.|+ .+...++.+..=|...+||+|. .+.....+.-|...|.++
T Consensus 253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~-~e~~~vl~~~~~G~f~~iD~R~---~~s~~~~~~lh~kKI~sv 328 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFS-AESRSVLFGDNVGNFNVIDLRT---DGSEYENLRLHKKKITSV 328 (498)
T ss_pred eccCceeeeeeecchhhHHHhhcCccceeeeecccc-CCCccEEEeecccceEEEEeec---CCccchhhhhhhccccee
Confidence 999999999999876433 3333345567788888 5555666666667999999983 444456667788899999
Q ss_pred EEcCCC-CeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEE
Q 015301 238 DSRRDG-RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCY 316 (409)
Q Consensus 238 ~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (409)
+++|.. .+|++++.|++.+|||++....... ++.....|. ..+
T Consensus 329 ~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s------------------------------p~lst~~Hr------rsV 372 (498)
T KOG4328|consen 329 ALNPVCPWFLATASLDQTAKIWDLRQLRGKAS------------------------------PFLSTLPHR------RSV 372 (498)
T ss_pred ecCCCCchheeecccCcceeeeehhhhcCCCC------------------------------cceeccccc------cee
Confidence 999954 5789999999999999998543321 112222233 345
Q ss_pred EeeeecCCCCEEEEEeCCCeEEEEEc----cCCceEEEeccCCc------ceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 317 FSPEYSTAQKYIYTGSSDNSVYIYDL----VSGAQVAKLDFHNA------PVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 317 ~~~~~s~~~~~l~~~~~dg~v~i~d~----~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
.+..|||.+..|++.+.|..|+|||. ...++..++. |.. ......|.|+..++++|-.-..|-|+|-..
T Consensus 373 ~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~ 451 (498)
T KOG4328|consen 373 NSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNG 451 (498)
T ss_pred eeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCC
Confidence 56678888888999999999999998 3445555554 321 234568999999999999888899999876
Q ss_pred Cc
Q 015301 387 IG 388 (409)
Q Consensus 387 ~~ 388 (409)
++
T Consensus 452 ~q 453 (498)
T KOG4328|consen 452 GQ 453 (498)
T ss_pred CE
Confidence 65
No 172
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.91 E-value=1.7e-22 Score=155.20 Aligned_cols=353 Identities=14% Similarity=0.157 Sum_probs=217.4
Q ss_pred eeEEecCceeEeeccce-EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEE-EeCCCcEEEEEcCCCeeeeeeeeccc
Q 015301 6 EVNYSGRGRFSAADSCH-VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVA-ASQESNIKVYNVDKNWKIQKDIETKA 83 (409)
Q Consensus 6 ~~~~s~dg~~~~~~~~~-~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t-~~~d~~i~vw~~~~~~~~~~~~~~~~ 83 (409)
-..|||+|+|+|+.... ++.+....-....+--.-..|.-+.|+.|.-++++ ...|+.|.+|++...+-..++....
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~- 91 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ- 91 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC-
Confidence 45799999999986543 33332221111122222467888999988877654 4678899999998775444443333
Q ss_pred ccceEEEEEeCCCCcE-EEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe
Q 015301 84 LRWTITDTSLSPDQRF-LVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 84 ~~~~v~~~~~s~~~~~-l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (409)
.++.+++|||||+. |.+...+-.|.+|.+.+.+......... .+..++|+|+|++.+.++.
T Consensus 92 --agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~----------------~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 92 --AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKT----------------NVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred --CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccccc----------------CceeEEECCCCceeeeeec
Confidence 37999999999955 4566678899999998877544333222 4678999999999888775
Q ss_pred cC---eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee-ccccceeEEE
Q 015301 163 DN---FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-GHLEGITFID 238 (409)
Q Consensus 163 d~---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~ 238 (409)
-. .+.+..-.....+..+...+-..+.+.|+ |+++.|+ +||- .-....+. .-.-.+..++
T Consensus 154 rDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWs-Pdg~~la---------Vwd~------~Leykv~aYe~~lG~k~v~ 217 (447)
T KOG4497|consen 154 RDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWS-PDGNWLA---------VWDN------VLEYKVYAYERGLGLKFVE 217 (447)
T ss_pred ccHHHHHHHHhhHHHHHHHhcCCCcccccCceEC-CCCcEEE---------Eecc------hhhheeeeeeeccceeEEE
Confidence 31 12222222334455566667778999999 8887776 4551 11111111 1224688899
Q ss_pred EcCCCCeEEEEeCCCcEEEeeCCCCccccccc---------------ccccccccccccccccccceec-----------
Q 015301 239 SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDN---------------SRLRDYDWDYRWMEYPSYARRL----------- 292 (409)
Q Consensus 239 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~----------- 292 (409)
|+|.+++|++|+.|+.+++.+--+.+...... ............+.+.+.....
T Consensus 218 wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE 297 (447)
T KOG4497|consen 218 WSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYE 297 (447)
T ss_pred eccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhh
Confidence 99999999999999999987643321111100 0000001111111111111000
Q ss_pred cccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC--CeEEEEEccCCceEEEeccCCcceeeeEEecCcCeE
Q 015301 293 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD--NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPML 370 (409)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d--g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 370 (409)
.......+..++...........+--++||+|..++++-... +.+.+||++..+....+. ...+|....|+|....|
T Consensus 298 ~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL 376 (447)
T KOG4497|consen 298 QQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRL 376 (447)
T ss_pred hhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceE
Confidence 000011122222212112222334456899999999987654 689999998877655554 56789999999998888
Q ss_pred EeecCCCeEEEEecCCCcccCCCc
Q 015301 371 ISSSWDCNIVRWEIPGIGEAPLPK 394 (409)
Q Consensus 371 ~s~~~dg~i~iw~~~~~~~~~~~~ 394 (409)
+.+.....+++|..........|+
T Consensus 377 ~vctg~srLY~W~psg~~~V~vP~ 400 (447)
T KOG4497|consen 377 VVCTGKSRLYFWAPSGPRVVGVPK 400 (447)
T ss_pred EEEcCCceEEEEcCCCceEEecCC
Confidence 888777889999987755444443
No 173
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=1.3e-21 Score=149.95 Aligned_cols=210 Identities=17% Similarity=0.239 Sum_probs=158.4
Q ss_pred CCCeEEEEEC-------CCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccc---eEEEEEeCCCCcEEEEEecCCEE
Q 015301 40 NSRVYTSQFS-------NDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRW---TITDTSLSPDQRFLVYASICAIV 109 (409)
Q Consensus 40 ~~~v~~~~~s-------~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~dg~i 109 (409)
...|+..+|- |+..++|+.+.+.-|.+||.-+++.... .....|.. ...+++|+|||.+|++| ....|
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraS-y~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrci 181 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRAS-YRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCI 181 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccc-hhhhhhHHhhhhheeEEecCCCCeEeec-ccceE
Confidence 3557777763 6778999999999999999998844333 22222322 35689999999999865 47899
Q ss_pred EEEEcC-CCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCe
Q 015301 110 NIVDVG-SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV 187 (409)
Q Consensus 110 ~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v 187 (409)
++||+. .+.......... ....+..+-+.+++|+| +.+.+++|+....+-|+.-..+.++..+-+|.+.|
T Consensus 182 rvFdt~RpGr~c~vy~t~~--------~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGv 253 (406)
T KOG2919|consen 182 RVFDTSRPGRDCPVYTTVT--------KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGV 253 (406)
T ss_pred EEeeccCCCCCCcchhhhh--------cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCe
Confidence 999994 443222221111 11123344689999999 55689999999999999988999999999999999
Q ss_pred EEEEEeCCCCcEEEEeeC-CCeEEEecccccccCCceeeeeecccc-ceeE--EEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 188 NTVCFADETGHLIFSGSD-DSLCKVWDRRCFISKGRANGVLMGHLE-GITF--IDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
+.+.|. ++++.|++|+. |-.|..||+| ....++..+..|.+ .-.. ....|++++|++|+.||.|++||++..
T Consensus 254 ThL~~~-edGn~lfsGaRk~dkIl~WDiR---~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 254 THLQWC-EDGNKLFSGARKDDKILCWDIR---YSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL 329 (406)
T ss_pred eeEEec-cCcCeecccccCCCeEEEEeeh---hccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC
Confidence 999999 89999999884 7789999998 35566666766765 2233 445788999999999999999999873
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.90 E-value=9.1e-20 Score=161.70 Aligned_cols=292 Identities=29% Similarity=0.453 Sum_probs=220.9
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-eeeeeeecccccceEEEEEe-CCCCc-EEEEEec-CCEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW-KIQKDIETKALRWTITDTSL-SPDQR-FLVYASI-CAIVN 110 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~~v~~~~~-s~~~~-~l~~~~~-dg~i~ 110 (409)
.+..|...|.++.|.+.+..++.++.|+.+.+|+...+. .......... ..+..+.+ ++++. .++..+. |+.+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD--SSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC--CceeeEEEECCCcceEEeccCCCCccEE
Confidence 567899999999999999999999999999999998875 3333222121 35666666 88887 5555444 89999
Q ss_pred EEEcCC-CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCCCeeeeEEcCCCCCeE
Q 015301 111 IVDVGS-SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKCSLRIPAHKSDVN 188 (409)
Q Consensus 111 ~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~ 188 (409)
+|+... ....... ..|...|..++|+|++..+++++. ++.+++|+...+..+..+..|...|.
T Consensus 138 ~~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 202 (466)
T COG2319 138 LWDLSTPGKLIRTL---------------EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVS 202 (466)
T ss_pred EEEecCCCeEEEEE---------------ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceE
Confidence 999987 2211111 134446889999999998888875 99999999999888888888999999
Q ss_pred EEEEeCCCCc-EEEEeeCCCeEEEecccccccCCceee-eeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccc
Q 015301 189 TVCFADETGH-LIFSGSDDSLCKVWDRRCFISKGRANG-VLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSN 266 (409)
Q Consensus 189 ~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 266 (409)
+++|+ +++. .+++++.|+.+++||.+ .+.... .+..|.... ...|+|++..+++++.|+.+++|+++....
T Consensus 203 ~~~~~-~~~~~~~~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~- 275 (466)
T COG2319 203 SLAFS-PDGGLLIASGSSDGTIRLWDLS----TGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS- 275 (466)
T ss_pred EEEEc-CCcceEEEEecCCCcEEEEECC----CCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-
Confidence 99999 7776 55555999999999854 555555 577787775 448999998899999999999999987322
Q ss_pred ccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 267 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
.+..+.+|. ..+....++|++..+++++.|+.+.+|+..+..
T Consensus 276 --------------------------------~~~~~~~~~------~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 276 --------------------------------LLRTLSGHS------SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred --------------------------------EEEEEecCC------ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence 112222231 233344678888888889999999999998887
Q ss_pred eEEEec--cCCcceeeeEEecCcCeEEee-cCCCeEEEEecCCCc
Q 015301 347 QVAKLD--FHNAPVRDCCWHPIYPMLISS-SWDCNIVRWEIPGIG 388 (409)
Q Consensus 347 ~~~~~~--~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iw~~~~~~ 388 (409)
...... .|...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 318 LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred eEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 776665 788889999994332455555 688999999998765
No 175
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.7e-20 Score=138.18 Aligned_cols=284 Identities=15% Similarity=0.250 Sum_probs=191.2
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-------eeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEc
Q 015301 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKN-------WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDV 114 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~-------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~ 114 (409)
.|.+-+++|.+++|++|..+|.|-+..+.+- ..........+|+++|+.++|. ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 4666789999999999999999999998632 1122334457899999999998 45677666 599999988
Q ss_pred CCCcc-ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEe
Q 015301 115 GSSAR-ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 193 (409)
Q Consensus 115 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~ 193 (409)
..... .......+....... ..-.-..|+++...|..+-++.++.|+.++-||+++|+....+++|++.|.++.--
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~---~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R 165 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQV---DAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGR 165 (325)
T ss_pred hhhhhhccchhhhhhcCcccc---CcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeec
Confidence 65443 111111111000000 00111258999999987778888889999999999999999999999999999985
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCceeeeeec---------cc-cceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG---------HL-EGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
.....+++|++||++++||.+ +.+.+..+.. |. ..|-+++. +..+|++|+. ..+.+|.++..
T Consensus 166 -~~~~qilsG~EDGtvRvWd~k----t~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrss 237 (325)
T KOG0649|consen 166 -NANGQILSGAEDGTVRVWDTK----TQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSS 237 (325)
T ss_pred -ccCcceeecCCCccEEEEecc----ccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCC
Confidence 556678999999999999976 5555544432 22 23445544 4667777654 46999999985
Q ss_pred cccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 264 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
++... ..+.++.. ...| +.+.+++++..+.|.-|.+
T Consensus 238 e~t~v--------------------------------fpipa~v~---------~v~F--~~d~vl~~G~g~~v~~~~l- 273 (325)
T KOG0649|consen 238 ESTCV--------------------------------FPIPARVH---------LVDF--VDDCVLIGGEGNHVQSYTL- 273 (325)
T ss_pred CceEE--------------------------------Eeccccee---------Eeee--ecceEEEeccccceeeeee-
Confidence 43322 22222221 1122 2457888888888999987
Q ss_pred CCceEEEeccCCcceeeeEEecC-cCeEEeecCCCeEEEEe
Q 015301 344 SGAQVAKLDFHNAPVRDCCWHPI-YPMLISSSWDCNIVRWE 383 (409)
Q Consensus 344 ~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~ 383 (409)
+|..-...+......+...|+.. -++|-.++..+.+.++.
T Consensus 274 ~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 274 NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred ccEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 56555555555555666666533 23566667777777653
No 176
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=4.4e-22 Score=152.79 Aligned_cols=253 Identities=14% Similarity=0.139 Sum_probs=179.0
Q ss_pred eEEecCc----eeEeeccceEEEEeee---cCCCceeecCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeeeeee
Q 015301 7 VNYSGRG----RFSAADSCHVLSRYLP---VNGPWKVDGMNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWKIQKD 78 (409)
Q Consensus 7 ~~~s~dg----~~~~~~~~~~~~~~~~---~~~~~~l~~h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~ 78 (409)
++|+-|- -|+++++...+.+.+. .+....+.+|.+.|+.+.|.|+. ++++++|.|.+|++|++++...+...
T Consensus 95 csw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 95 CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred EEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 4555432 3677766554444433 33445788999999999999976 68899999999999999999999988
Q ss_pred eecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccccccee----c------e-eeeeeeec--CCCCcceee
Q 015301 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVT----E------I-HKGLDFSA--DGDEDEFGI 145 (409)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~----~------~-~~~~~~~~--~~~~~~~~v 145 (409)
-...+|...|.++.|++++.+|++++.|.++.+|++...+........ . . .....|.. ...-|...|
T Consensus 175 GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 889999999999999999999999999999999999855432211111 0 0 00011111 234566677
Q ss_pred EEEEEcCCCCeEEEEEecCeEEEEECCC-Ce-------------eeeEEcCCCCCeEEEEEe-CCCCcEEEEeeCCCeEE
Q 015301 146 FSVKFSTDGQELVAAGSDNFIYVYDLQA-NK-------------CSLRIPAHKSDVNTVCFA-DETGHLIFSGSDDSLCK 210 (409)
Q Consensus 146 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~-------------~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~ 210 (409)
-|+.|- |+++++-+-++.|..|.... ++ .+..+.-....|.-+.|. .+-.++|+.|...|.|.
T Consensus 255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~ 332 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVY 332 (385)
T ss_pred HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEE
Confidence 777774 57888888899999998721 11 122233334455555543 15678999999999999
Q ss_pred EecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 211 VWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 211 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
+||++...+..............|...+|+.|+..|+..+.|+.|.-||-.
T Consensus 333 vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 333 VWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999984322211111122234578899999999999999999999999853
No 177
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.89 E-value=5.2e-21 Score=146.45 Aligned_cols=212 Identities=13% Similarity=0.104 Sum_probs=170.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEc-CCC
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDV-GSS 117 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~-~~~ 117 (409)
-..+|+|.+|++|+..+|++.....|.||.............+..|...|+.+.|+|..+.|++++.|..-++|.. ..+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 4578999999999999999999999999999887656666778889999999999999999999999999999999 555
Q ss_pred ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeee----eEEcCCCCCeEEEEEe
Q 015301 118 ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCS----LRIPAHKSDVNTVCFA 193 (409)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~----~~~~~~~~~v~~~~~~ 193 (409)
+-.....+.... ..++++.|+|.++.|++|+....|.||-++...-= ..-+.+.+.|+++.|+
T Consensus 89 ~WkptlvLlRiN-------------rAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWh 155 (361)
T KOG1523|consen 89 TWKPTLVLLRIN-------------RAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWH 155 (361)
T ss_pred eeccceeEEEec-------------cceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeecc
Confidence 544444444332 25999999999999999999999999988654321 1224567889999999
Q ss_pred CCCCcEEEEeeCCCeEEEeccccc--------------ccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEee
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCF--------------ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 259 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 259 (409)
+++-+|++|+.|+.++++..-.. ..-+..+..+....+.+..+.|+|+|..|+-.+.|..+.+-|
T Consensus 156 -pnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 156 -PNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred -CCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence 88999999999999999974210 111222333334567899999999999999999999999999
Q ss_pred CCCCc
Q 015301 260 IRKMS 264 (409)
Q Consensus 260 ~~~~~ 264 (409)
.....
T Consensus 235 a~~p~ 239 (361)
T KOG1523|consen 235 AAGPS 239 (361)
T ss_pred cCCCc
Confidence 87644
No 178
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.89 E-value=5.1e-21 Score=144.57 Aligned_cols=290 Identities=14% Similarity=0.182 Sum_probs=196.5
Q ss_pred CCeEEEEECC--C-CCEEEEEeC----CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCc-----EEEEEecCCE
Q 015301 41 SRVYTSQFSN--D-GSFFVAASQ----ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQR-----FLVYASICAI 108 (409)
Q Consensus 41 ~~v~~~~~s~--~-~~~l~t~~~----d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-----~l~~~~~dg~ 108 (409)
-+++++.||. + +.+||.|+. .+.|.|-.++.............|..+++.+.|.|+.. .||++ +..
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDF 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCe
Confidence 4577888873 2 346888874 45677766553322222222356778999999999863 45554 467
Q ss_pred EEEEEcCCCccc--cccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCCee---eeEEcC
Q 015301 109 VNIVDVGSSARE--SLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKC---SLRIPA 182 (409)
Q Consensus 109 i~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~ 182 (409)
+|+|.+...+.. ....+.. . ....+..++++..|+. +-+++.+.+-|.+..|||++++.. ...+-.
T Consensus 123 LRlWri~~ee~~~~~~~~L~~-~-------kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA 194 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNN-N-------KNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA 194 (364)
T ss_pred EEEEeccCcCCceehhhhhcc-C-------cccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence 999999853321 1111111 1 1124455899999998 677888888999999999998733 455678
Q ss_pred CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC-CCCeEEEEeCC-CcEEEeeC
Q 015301 183 HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNGKD-QTTKLWDI 260 (409)
Q Consensus 183 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d-g~i~iwd~ 260 (409)
|...|..++|.....+.|++.+.||.+++||+|.... ...+..-.....+...++|++ |.+++++-..| ..|.+.|+
T Consensus 195 HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH-STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi 273 (364)
T KOG0290|consen 195 HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH-STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI 273 (364)
T ss_pred cCcceeEEEeccCccceEEEecCCCcEEEEEeccccc-ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEe
Confidence 9999999999955567899999999999999984321 222222222356788889987 45677776554 57999999
Q ss_pred CCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC-CCCEEEEEeCCCeEEE
Q 015301 261 RKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGSSDNSVYI 339 (409)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~v~i 339 (409)
+.+ ..++..+++|... +..++|.| ....|++++.|..+.+
T Consensus 274 R~P---------------------------------~tpva~L~~H~a~------VNgIaWaPhS~~hictaGDD~qali 314 (364)
T KOG0290|consen 274 RVP---------------------------------CTPVARLRNHQAS------VNGIAWAPHSSSHICTAGDDCQALI 314 (364)
T ss_pred cCC---------------------------------CcceehhhcCccc------ccceEecCCCCceeeecCCcceEEE
Confidence 874 3557778888733 33345555 3578999999999999
Q ss_pred EEccCCc------eEEEeccCCcceeeeEEecCcC-eEEeecCCCeEEEE
Q 015301 340 YDLVSGA------QVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRW 382 (409)
Q Consensus 340 ~d~~~~~------~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw 382 (409)
||+.+.- ++..+. -.+.|+.+.|++... .++.+. ++.+.+-
T Consensus 315 WDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kkleiL 362 (364)
T KOG0290|consen 315 WDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEIL 362 (364)
T ss_pred EecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeEE
Confidence 9997532 233333 567899999997544 666664 4555543
No 179
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.89 E-value=4e-20 Score=156.12 Aligned_cols=281 Identities=12% Similarity=0.129 Sum_probs=174.8
Q ss_pred EEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEEEcCC-Cccccccceeceeeee
Q 015301 55 FVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVDVGS-SARESLANVTEIHKGL 132 (409)
Q Consensus 55 l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w~~~~-~~~~~~~~~~~~~~~~ 132 (409)
+++...++.|.+|++.+...+...... ...+.+..++++|++++|++++ .++.|.+|++.. +.........
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~------ 77 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVV-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP------ 77 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEE-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec------
Confidence 344467899999999743232221111 1223577899999999987764 578899999963 2221111100
Q ss_pred eeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCCC-e---eeeEEcCCCCCeEEEEEeCCCCcEEEE-eeCC
Q 015301 133 DFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQAN-K---CSLRIPAHKSDVNTVCFADETGHLIFS-GSDD 206 (409)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~-~---~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~d 206 (409)
.......++++|+++++++++. ++.|.+|++.+. . .+..+. +......++++ |+++++++ ...+
T Consensus 78 --------~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~-p~g~~l~v~~~~~ 147 (330)
T PRK11028 78 --------LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANID-PDNRTLWVPCLKE 147 (330)
T ss_pred --------CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeC-CCCCEEEEeeCCC
Confidence 0113568999999999888765 789999999643 2 222232 33446778898 67777754 4567
Q ss_pred CeEEEecccccccCCcee------eeeeccccceeEEEEcCCCCeEEEEeC-CCcEEEeeCCCCcccccccccccccccc
Q 015301 207 SLCKVWDRRCFISKGRAN------GVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWD 279 (409)
Q Consensus 207 g~i~iwd~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 279 (409)
+.|.+||+.. .+... .... .......+.|+|++++++++.. ++.|.+|+++......
T Consensus 148 ~~v~v~d~~~---~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~------------ 211 (330)
T PRK11028 148 DRIRLFTLSD---DGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI------------ 211 (330)
T ss_pred CEEEEEEECC---CCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE------------
Confidence 9999999852 12111 0111 1234578999999999988876 8999999997421000
Q ss_pred cccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-CCeEEEEEccCCceEEEeccC---C
Q 015301 280 YRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLVSGAQVAKLDFH---N 355 (409)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~---~ 355 (409)
..+..+...............+.++|++++++++.. ++.|.+|++.......++.++ .
T Consensus 212 ------------------~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~ 273 (330)
T PRK11028 212 ------------------ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE 273 (330)
T ss_pred ------------------EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc
Confidence 001111100000000011123568899999999865 689999999654322222222 2
Q ss_pred cceeeeEEecCcCeEEeecC-CCeEEEEecCC
Q 015301 356 APVRDCCWHPIYPMLISSSW-DCNIVRWEIPG 386 (409)
Q Consensus 356 ~~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~~ 386 (409)
.....+.++|+|++|+++.. +++|.+|+++.
T Consensus 274 ~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 274 TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred ccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 24568999999998887764 89999998863
No 180
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=7.4e-22 Score=162.18 Aligned_cols=272 Identities=11% Similarity=0.126 Sum_probs=198.5
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-----CeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDK-----NWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAI 108 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~-----~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 108 (409)
+++..|...|+.++|.|....|++++.||++++|+++. ...+.......+|.++|.|++..+++..+.+|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 47889999999999999999999999999999999932 2455677788999999999999999999999999999
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc--CCCCC
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP--AHKSD 186 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~ 186 (409)
|+.|++.... . ..+............+|...|+.+++++....|++++.||+++.|+.....+ ..+. ...+.
T Consensus 368 I~~w~~p~n~-d----p~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 368 IRCWNLPPNQ-D----PDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred eeeeccCCCC-C----cccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 9999886221 1 1112222234444557888999999999999999999999999999876665 2231 22234
Q ss_pred eEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec-------cccceeEEEEcCCCCeEEEEeCCCcEEEee
Q 015301 187 VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG-------HLEGITFIDSRRDGRYFISNGKDQTTKLWD 259 (409)
Q Consensus 187 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 259 (409)
...+.+-.......++...-+.-.++++. ....+..+.. ....+..+.++|...+.+++..|+.|+++|
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~e----v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~d 517 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDME----VVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFD 517 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhh----hhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccc
Confidence 46666652222233333233333333322 2222222211 123467788899999999999999999999
Q ss_pred CCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEE
Q 015301 260 IRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYI 339 (409)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i 339 (409)
..+ +..+.....|. ..+.++++.|+|.+|++++.|+.+++
T Consensus 518 n~~----------------------------------~~~l~s~~a~~------~svtslai~~ng~~l~s~s~d~sv~l 557 (577)
T KOG0642|consen 518 NKT----------------------------------GKILHSMVAHK------DSVTSLAIDPNGPYLMSGSHDGSVRL 557 (577)
T ss_pred ccc----------------------------------cccchheeecc------ceecceeecCCCceEEeecCCceeeh
Confidence 887 45555555555 44567789999999999999999999
Q ss_pred EEccCCceEEEeccCC
Q 015301 340 YDLVSGAQVAKLDFHN 355 (409)
Q Consensus 340 ~d~~~~~~~~~~~~~~ 355 (409)
|.+....++.....|.
T Consensus 558 ~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 558 WKLDVKTCVLESTAHR 573 (577)
T ss_pred hhccchheeecccccc
Confidence 9998887777766664
No 181
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.89 E-value=5.1e-19 Score=138.34 Aligned_cols=280 Identities=14% Similarity=0.233 Sum_probs=197.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec--CCEEEEEEcCCC
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI--CAIVNIVDVGSS 117 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~~w~~~~~ 117 (409)
...+..+.|+.+...|..|+.|| .++|+.+....... .......|..+-|+. .++|..+. ...+++.+++..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~---~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS---KDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhc---ccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccC
Confidence 45677788999999999999998 78998876544222 111223577777874 45555543 345888888766
Q ss_pred ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc---CCCCCeEEEEEeC
Q 015301 118 ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP---AHKSDVNTVCFAD 194 (409)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~ 194 (409)
.......... +|.++.++ .+.|+++-. ..|+|||+++.+++.++. .+...+.++.++
T Consensus 79 ~~ICe~~fpt----------------~IL~VrmN--r~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n- 138 (391)
T KOG2110|consen 79 TTICEIFFPT----------------SILAVRMN--RKRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPN- 138 (391)
T ss_pred ceEEEEecCC----------------ceEEEEEc--cceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccC-
Confidence 5443333222 58888885 445666654 459999999999988874 345556666666
Q ss_pred CCCcEEEEee--CCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCc-EEEeeCCCCcccccccc
Q 015301 195 ETGHLIFSGS--DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT-TKLWDIRKMSSNTTDNS 271 (409)
Q Consensus 195 ~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~ 271 (409)
..+.+++.-+ ..|.|.+||+ .+.+....+..|.+++.+++|+++|.+||+++..|+ |+++.+.+
T Consensus 139 ~~n~ylAyp~s~t~GdV~l~d~----~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~--------- 205 (391)
T KOG2110|consen 139 NANCYLAYPGSTTSGDVVLFDT----INLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE--------- 205 (391)
T ss_pred CCCceEEecCCCCCceEEEEEc----ccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC---------
Confidence 5556776533 4689999995 478888899999999999999999999999999885 78999877
Q ss_pred cccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce----
Q 015301 272 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ---- 347 (409)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~---- 347 (409)
++.+..|+.... ...+++++|+|++++|++.++.++|+||.++.-..
T Consensus 206 -------------------------G~kl~eFRRG~~----~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~ 256 (391)
T KOG2110|consen 206 -------------------------GQKLYEFRRGTY----PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPE 256 (391)
T ss_pred -------------------------ccEeeeeeCCce----eeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCC
Confidence 455555554332 35578899999999999999999999998853210
Q ss_pred ---------------------------------EEEeccCCcce-eeeEEe--cCcCeEEeecCCCeEEEEecCCC
Q 015301 348 ---------------------------------VAKLDFHNAPV-RDCCWH--PIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 348 ---------------------------------~~~~~~~~~~v-~~~~~s--~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
..+.+...... ..+.+. +..+.+..++.||.++.|.++..
T Consensus 257 ~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 257 SPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred CCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 00001111111 223343 35568888999999999999763
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.89 E-value=8.3e-21 Score=143.45 Aligned_cols=254 Identities=20% Similarity=0.365 Sum_probs=178.9
Q ss_pred cceEEEEEeCC--C-CcEEEEEec----CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC--
Q 015301 85 RWTITDTSLSP--D-QRFLVYASI----CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ-- 155 (409)
Q Consensus 85 ~~~v~~~~~s~--~-~~~l~~~~~----dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 155 (409)
..++.++.|+. + ..+||.|+. .+.|.+..+.......... ....|..+++.+.|.|+..
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~------------a~fd~~YP~tK~~wiPd~~g~ 111 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED------------ANFDHPYPVTKLMWIPDSKGV 111 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc------------CCCCCCCCccceEecCCcccc
Confidence 34688888883 2 457888873 4566666554322211111 1135777999999999763
Q ss_pred ---eEEEEEecCeEEEEECCCCeeee----EE-----cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCce
Q 015301 156 ---ELVAAGSDNFIYVYDLQANKCSL----RI-----PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRA 223 (409)
Q Consensus 156 ---~l~~~~~d~~i~v~d~~~~~~~~----~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 223 (409)
+|++. +-.+++|.+...+... .+ ..+..++++..|+.-+.++|.+.+-|-+..|||+... ..+..
T Consensus 112 ~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~-~~~~v 188 (364)
T KOG0290|consen 112 YPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETG-VSGTV 188 (364)
T ss_pred Ccchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeec-cccce
Confidence 45544 3579999987322111 11 2467899999999888999999999999999998621 13345
Q ss_pred eeeeeccccceeEEEEcCCC-CeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceee
Q 015301 224 NGVLMGHLEGITFIDSRRDG-RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLAT 302 (409)
Q Consensus 224 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (409)
...+..|...|..++|...+ +.|++.+.||.+++||++..+.....
T Consensus 189 kTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII--------------------------------- 235 (364)
T KOG0290|consen 189 KTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII--------------------------------- 235 (364)
T ss_pred eeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEE---------------------------------
Confidence 66788899999999999855 47899999999999999985433222
Q ss_pred eecccceeeeeEEEEeeeecCCCCEEEEEeCC-CeEEEEEccCC-ceEEEeccCCcceeeeEEecCcC-eEEeecCCCeE
Q 015301 303 YKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD-NSVYIYDLVSG-AQVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNI 379 (409)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g~v~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i 379 (409)
++.........+..++.. |-+++|+-..| ..|.|.|++.. .++.++++|.+.|++++|.|... .|.|+|.|..+
T Consensus 236 YE~p~~~~pLlRLswnkq---DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qa 312 (364)
T KOG0290|consen 236 YEDPSPSTPLLRLSWNKQ---DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQA 312 (364)
T ss_pred ecCCCCCCcceeeccCcC---CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceE
Confidence 111111122223333222 45677776655 57999999875 67899999999999999999766 89999999999
Q ss_pred EEEecCCCcc
Q 015301 380 VRWEIPGIGE 389 (409)
Q Consensus 380 ~iw~~~~~~~ 389 (409)
.+||+.....
T Consensus 313 liWDl~q~~~ 322 (364)
T KOG0290|consen 313 LIWDLQQMPR 322 (364)
T ss_pred EEEecccccc
Confidence 9999987654
No 183
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.89 E-value=6.9e-21 Score=149.83 Aligned_cols=206 Identities=17% Similarity=0.256 Sum_probs=160.7
Q ss_pred CCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCC-------eeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeE
Q 015301 138 GDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQAN-------KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLC 209 (409)
Q Consensus 138 ~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 209 (409)
..+|..+|..++|+| +...|++|+.|.+|.||.+..+ +++..+.+|...|..++|+|.-.+.|++++.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 347888999999999 6778999999999999998754 45667889999999999998889999999999999
Q ss_pred EEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccc
Q 015301 210 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYA 289 (409)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (409)
.+|++. ++..+..+. |.+.|.+++|+.||.+|++.+.|..|+|||.++.
T Consensus 157 ~iWnv~----tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~-------------------------- 205 (472)
T KOG0303|consen 157 SIWNVG----TGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG-------------------------- 205 (472)
T ss_pred EEEecc----CCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCC--------------------------
Confidence 999964 777777776 9999999999999999999999999999999983
Q ss_pred eeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe---CCCeEEEEEccCCce---EEEeccCCcceeeeEE
Q 015301 290 RRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS---SDNSVYIYDLVSGAQ---VAKLDFHNAPVRDCCW 363 (409)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~---~dg~v~i~d~~~~~~---~~~~~~~~~~v~~~~~ 363 (409)
..+..-.+|...... +.+ |-.+|.++-+|. .+..+-+||..+.+. ..++. .+..|.---|
T Consensus 206 --------~~v~e~~~heG~k~~-Rai----fl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFy 271 (472)
T KOG0303|consen 206 --------TVVSEGVAHEGAKPA-RAI----FLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFY 271 (472)
T ss_pred --------cEeeecccccCCCcc-eeE----EeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeee
Confidence 333333444432222 222 333577555553 367899999876543 34444 3456766678
Q ss_pred ecCcCeEEeec-CCCeEEEEecCCCc
Q 015301 364 HPIYPMLISSS-WDCNIVRWEIPGIG 388 (409)
Q Consensus 364 s~~~~~l~s~~-~dg~i~iw~~~~~~ 388 (409)
.+|.++++.+| .|+.|+-|++.+..
T Consensus 272 D~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 272 DPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCCCCEEEEEecCCcceEEEEecCCC
Confidence 89988776654 69999999997754
No 184
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=6.6e-19 Score=152.58 Aligned_cols=341 Identities=13% Similarity=0.111 Sum_probs=230.0
Q ss_pred eeeEEecCceeEeeccceEEEEeee--cCCCceeecCCCCeEEEEECCCCC---EEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 5 REVNYSGRGRFSAADSCHVLSRYLP--VNGPWKVDGMNSRVYTSQFSNDGS---FFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~--~~~~~~l~~h~~~v~~~~~s~~~~---~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
+.-.||+|++|+.......+..|.. ..+...+.+|..+++.+.+.|... ++.+++.||.|++||...+..+....
T Consensus 20 ~~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~ 99 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFD 99 (792)
T ss_pred cccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEe
Confidence 4457899999887766655554443 344458999999999999987554 67799999999999975432211100
Q ss_pred e-------------------------------------------------------------------------------
Q 015301 80 E------------------------------------------------------------------------------- 80 (409)
Q Consensus 80 ~------------------------------------------------------------------------------- 80 (409)
.
T Consensus 100 ~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~ 179 (792)
T KOG1963|consen 100 NNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVH 179 (792)
T ss_pred cCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEE
Confidence 0
Q ss_pred ---------------------cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCC-CccccccceeceeeeeeeecCC
Q 015301 81 ---------------------TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGS-SARESLANVTEIHKGLDFSADG 138 (409)
Q Consensus 81 ---------------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~ 138 (409)
...|...+++.++||+++++|+|..||.|.+|.--. ............
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW---------- 249 (792)
T KOG1963|consen 180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW---------- 249 (792)
T ss_pred eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe----------
Confidence 001222468899999999999999999999996544 222222222222
Q ss_pred CCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccc
Q 015301 139 DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 218 (409)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 218 (409)
|..+|.+++|+++|.+|++|+..+.+.+|.+++++ .+-++.-.++|..+.++ +++++.+....|..|.+.......
T Consensus 250 --H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS-~ds~~~sl~~~DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 250 --HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVS-PDSDLYSLVLEDNQIHLIKASDLE 325 (792)
T ss_pred --cccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEc-CCCCeEEEEecCceEEEEeccchh
Confidence 33479999999999999999999999999999998 55577788999999999 899999999999999998753111
Q ss_pred cCCceeeeee--------ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccce
Q 015301 219 SKGRANGVLM--------GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYAR 290 (409)
Q Consensus 219 ~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (409)
....+..+. ...+-.+.++++|..+.++..+..|.|.+||+-+.........
T Consensus 326 -~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v------------------- 385 (792)
T KOG1963|consen 326 -IKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQV------------------- 385 (792)
T ss_pred -hhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEE-------------------
Confidence 111111111 1234467788999777888899999999999977433211110
Q ss_pred eccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe--------CC--CeEEEEEccCCceEEEe-----ccCC
Q 015301 291 RLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS--------SD--NSVYIYDLVSGAQVAKL-----DFHN 355 (409)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--------~d--g~v~i~d~~~~~~~~~~-----~~~~ 355 (409)
.....+.........+...+.+..|.++++.- .| -.+++|-......-..+ ..|.
T Consensus 386 ----------~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~ 455 (792)
T KOG1963|consen 386 ----------CDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHG 455 (792)
T ss_pred ----------EeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCC
Confidence 00111111112333444555666688888864 22 35788876554332222 3576
Q ss_pred cceeeeEEe-cCcC-eEEeecCCCeEEEEecCCCcc
Q 015301 356 APVRDCCWH-PIYP-MLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 356 ~~v~~~~~s-~~~~-~l~s~~~dg~i~iw~~~~~~~ 389 (409)
..+...++. +... ..++++.||.+++|-+.....
T Consensus 456 ~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n 491 (792)
T KOG1963|consen 456 NAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSN 491 (792)
T ss_pred ceeEEEEEecCcccceeEEeccCCeEEEEEEecccc
Confidence 665555554 3333 899999999999999965443
No 185
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=4.9e-21 Score=150.64 Aligned_cols=211 Identities=17% Similarity=0.209 Sum_probs=161.7
Q ss_pred eeecCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeee----eeeeecccccceEEEEEeCCC-CcEEEEEecCCE
Q 015301 35 KVDGMNSRVYTSQFSND-GSFFVAASQESNIKVYNVDKNWKI----QKDIETKALRWTITDTSLSPD-QRFLVYASICAI 108 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~-~~~l~t~~~d~~i~vw~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~ 108 (409)
.+.||+++|..++|+|- ...+|+||.|.+|.||.+..+... .....+.+|...|--++|+|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 67799999999999994 457899999999999999876332 223456788889999999996 578899999999
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCC-e
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSD-V 187 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-v 187 (409)
|.+|++.+++...... |...|+++.|+.+|.+|++++.|..|+|||.++++.+..-.+|.+. -
T Consensus 156 v~iWnv~tgeali~l~----------------hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~ 219 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD----------------HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKP 219 (472)
T ss_pred EEEEeccCCceeeecC----------------CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCc
Confidence 9999999997643322 3446999999999999999999999999999999999888777653 3
Q ss_pred EEEEEeCCCCcEEEEee---CCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCCC
Q 015301 188 NTVCFADETGHLIFSGS---DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKM 263 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 263 (409)
..+.|. .++.++-+|- .+..+-+||...... ......+. ....|.---|.+|.+.+..++ .|+.|+.|.+.+.
T Consensus 220 ~Raifl-~~g~i~tTGfsr~seRq~aLwdp~nl~e-P~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 220 ARAIFL-ASGKIFTTGFSRMSERQIALWDPNNLEE-PIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred ceeEEe-ccCceeeeccccccccceeccCcccccC-cceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 445566 6777555543 467899999764322 22233333 345566666788888766554 5999999998874
Q ss_pred c
Q 015301 264 S 264 (409)
Q Consensus 264 ~ 264 (409)
.
T Consensus 297 ~ 297 (472)
T KOG0303|consen 297 P 297 (472)
T ss_pred C
Confidence 4
No 186
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.88 E-value=3.5e-20 Score=159.66 Aligned_cols=278 Identities=13% Similarity=0.089 Sum_probs=191.7
Q ss_pred eEEEEeeecCCCceeecCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeee---eeeeecccccceEEEEEeCCCC
Q 015301 22 HVLSRYLPVNGPWKVDGMNSRVYTSQFSND-GSFFVAASQESNIKVYNVDKNWKI---QKDIETKALRWTITDTSLSPDQ 97 (409)
Q Consensus 22 ~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~-~~~l~t~~~d~~i~vw~~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~ 97 (409)
..+|.+.....+.....-...|+|+.|+|. ..++|.|..+|.|.+||+..+... ........|..+++.+.|..+.
T Consensus 224 ~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~ 303 (555)
T KOG1587|consen 224 LLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNE 303 (555)
T ss_pred EEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccC
Confidence 455665555555555667789999999994 567788889999999999877442 1122345678899999997654
Q ss_pred --cEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCC
Q 015301 98 --RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQAN 174 (409)
Q Consensus 98 --~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~ 174 (409)
.-+++++.||.|..|+++.-.............. .+........+++++|.+ +-..+++|+.+|.|.--+-...
T Consensus 304 ~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~---~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 304 HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH---KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred CCCceEEEecCCcEeeeeccccccchhhcccccccc---cccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 4499999999999998765443221111111110 011112234689999998 5567899999999887433222
Q ss_pred e--------eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC-Ce
Q 015301 175 K--------CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG-RY 245 (409)
Q Consensus 175 ~--------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 245 (409)
+ ....+..|.++|.++.++|-....+++++ |.+++||.-. ....++..+..+...+++++|||.. ..
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~---~~~~Pl~~~~~~~~~v~~vaWSptrpav 456 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSED---VIASPLLSLDSSPDYVTDVAWSPTRPAV 456 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeec-cceeEecccc---CCCCcchhhhhccceeeeeEEcCcCceE
Confidence 1 12345678999999999965556666666 9999999942 1556667777788889999999964 57
Q ss_pred EEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCC
Q 015301 246 FISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ 325 (409)
Q Consensus 246 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 325 (409)
|+++..||.+.+||+...... ++...+-.. .......++++|
T Consensus 457 F~~~d~~G~l~iWDLl~~~~~--------------------------------Pv~s~~~~~------~~l~~~~~s~~g 498 (555)
T KOG1587|consen 457 FATVDGDGNLDIWDLLQDDEE--------------------------------PVLSQKVCS------PALTRVRWSPNG 498 (555)
T ss_pred EEEEcCCCceehhhhhccccC--------------------------------Ccccccccc------cccceeecCCCC
Confidence 788888999999999873322 122221111 222334577789
Q ss_pred CEEEEEeCCCeEEEEEccC
Q 015301 326 KYIYTGSSDNSVYIYDLVS 344 (409)
Q Consensus 326 ~~l~~~~~dg~v~i~d~~~ 344 (409)
+.|++|...|++++|++..
T Consensus 499 ~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 499 KLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cEEEEecCCCcEEEEEcCc
Confidence 9999999999999999953
No 187
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.88 E-value=2.2e-20 Score=166.92 Aligned_cols=317 Identities=15% Similarity=0.155 Sum_probs=200.9
Q ss_pred eeecCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCC----eeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEE
Q 015301 35 KVDGMNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKN----WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIV 109 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 109 (409)
.|..|...|..++.++.. .+++|||.||+|++|+...- ..............++.++...+.+..+|+++.||.|
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence 566789999999887654 99999999999999997643 1222333333345589999999999999999999999
Q ss_pred EEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CC-CeEEEEEecCeEEEEECCCCeeeeEEc--CCCC
Q 015301 110 NIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DG-QELVAAGSDNFIYVYDLQANKCSLRIP--AHKS 185 (409)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~ 185 (409)
++.+++.............. +.......-|..-+|.. .+ ..++.+...+.|..||........+++ ...+
T Consensus 1123 ~~~~id~~~~~~~~~~~~ri------~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRI------PNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred EEEEccccccccceeeeeec------ccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 99999874222211111111 11111111233334433 23 367888888999999998876655443 3457
Q ss_pred CeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeee-eccccceeEEEEcCC---CCeEEEEe--CCCcEEEee
Q 015301 186 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRD---GRYFISNG--KDQTTKLWD 259 (409)
Q Consensus 186 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~~~~--~dg~i~iwd 259 (409)
.|++++.+ +.+++++.|+..|.+.+||+| -..++..+ .++..++..+..+|- ....++++ ..+.|.+|+
T Consensus 1197 ~vTSi~id-p~~~WlviGts~G~l~lWDLR----F~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1197 LVTSIVID-PWCNWLVIGTSRGQLVLWDLR----FRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred ceeEEEec-CCceEEEEecCCceEEEEEee----cCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 89999999 888999999999999999998 33333332 234467777776653 34455444 477899999
Q ss_pred CCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEE
Q 015301 260 IRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYI 339 (409)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i 339 (409)
+.++.+....-......... ...+.... -+.+. . ...++ .+...+.++.+|+.|..|+.
T Consensus 1272 ~~~g~~~~vl~~s~~~p~ls------------~~~Ps~~~---~kp~~--~---~~~~~-~~~~~~~~~ltggsd~kIR~ 1330 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILS------------YALPSNDA---RKPDS--L---AGISC-GVCEKNGFLLTGGSDMKIRK 1330 (1431)
T ss_pred cccCcceEEEEcCCCCcchh------------hhcccccC---CCCCc--c---cceee-ecccCCceeeecCCccceee
Confidence 99875544332110000000 00000000 00000 0 01111 12234678999999999999
Q ss_pred EEccCCceE-----------------------------EE-------------------e--------ccCCcceeeeEE
Q 015301 340 YDLVSGAQV-----------------------------AK-------------------L--------DFHNAPVRDCCW 363 (409)
Q Consensus 340 ~d~~~~~~~-----------------------------~~-------------------~--------~~~~~~v~~~~~ 363 (409)
||....+.. .. . ..|..+|+++++
T Consensus 1331 wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~ 1410 (1431)
T KOG1240|consen 1331 WDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMAT 1410 (1431)
T ss_pred ccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhh
Confidence 997543221 00 0 127788999988
Q ss_pred ecCcC-eEEeecCCCeEEEEe
Q 015301 364 HPIYP-MLISSSWDCNIVRWE 383 (409)
Q Consensus 364 s~~~~-~l~s~~~dg~i~iw~ 383 (409)
..... +|++++.||.|++|.
T Consensus 1411 ~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1411 LKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hccCccEEEEecCCCeeeecC
Confidence 66544 899999999999994
No 188
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.5e-20 Score=155.76 Aligned_cols=289 Identities=14% Similarity=0.126 Sum_probs=209.0
Q ss_pred cceeeEEecCceeEeeccceE---EEEeeecCCCceeecCCCCeEEEEECCCCC--EEEEEeCCCcEEEEEcCCC-----
Q 015301 3 VGREVNYSGRGRFSAADSCHV---LSRYLPVNGPWKVDGMNSRVYTSQFSNDGS--FFVAASQESNIKVYNVDKN----- 72 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~---~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~--~l~t~~~d~~i~vw~~~~~----- 72 (409)
+.||+...|.|.++++++... +|......+..+. ...+.|.|++|+|.++ .||++-.+ .+-|-+..-+
T Consensus 402 ~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~-~~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~G~~~e~ 479 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV-QFDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIFGDRLEV 479 (733)
T ss_pred eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE-eecceeEEEEecCCCCceeEEEEecC-ceEEeCccccchhhh
Confidence 358999999999999988765 4554444443332 3456899999999775 34444332 2333332111
Q ss_pred ----------------------------eeee-eeeecccccceEEEEEeCCCCcEEEEEecC---CEEEEEEcCCCccc
Q 015301 73 ----------------------------WKIQ-KDIETKALRWTITDTSLSPDQRFLVYASIC---AIVNIVDVGSSARE 120 (409)
Q Consensus 73 ----------------------------~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~~w~~~~~~~~ 120 (409)
.... .....-.|...|..+.|+..|.||++...+ ..|.|.++......
T Consensus 480 ~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ 559 (733)
T KOG0650|consen 480 GPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ 559 (733)
T ss_pred cchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc
Confidence 0000 001112345589999999999999988643 47888988766544
Q ss_pred cccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE
Q 015301 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI 200 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 200 (409)
..+... .+.|.++.|+|...+|++++. ..|+|||+...+.+..+......|..++.+ +.|.-|
T Consensus 560 ~PF~ks---------------kG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msih-p~GDnl 622 (733)
T KOG0650|consen 560 SPFRKS---------------KGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIH-PNGDNL 622 (733)
T ss_pred Cchhhc---------------CCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeec-CCCCeE
Confidence 322211 225999999999999998875 679999999988888887788899999999 888889
Q ss_pred EEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccc
Q 015301 201 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDY 280 (409)
Q Consensus 201 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 280 (409)
+.|+.|+.+..+|+. ...++.+.+..|...+++++|++.-.+|++|+.||++.|+.-+-..
T Consensus 623 i~gs~d~k~~WfDld---lsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~---------------- 683 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLD---LSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN---------------- 683 (733)
T ss_pred EEecCCCeeEEEEcc---cCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh----------------
Confidence 999999999999985 4667888889999999999999999999999999999998643211
Q ss_pred ccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEE
Q 015301 281 RWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIY 340 (409)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~ 340 (409)
..+..+.-.++..+.+|... ....+....|+|...+|++++.||+|++|
T Consensus 684 ---------Dl~qnpliVPlK~L~gH~~~--~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 684 ---------DLLQNPLIVPLKRLRGHEKT--NDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ---------hhhcCCceEeeeeccCceee--cccceEeecccCCCceEEecCCCceEEee
Confidence 11112223456777888743 12234556688889999999999999998
No 189
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=3.6e-18 Score=151.44 Aligned_cols=291 Identities=26% Similarity=0.416 Sum_probs=213.9
Q ss_pred CCCceeecCCCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCc-EEEEEecCCE
Q 015301 31 NGPWKVDGMNSRVYTSQFSNDGSFFVAASQ-ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQR-FLVYASICAI 108 (409)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~ 108 (409)
.....+..|...|.+++|+|+++++++++. |+.+++|+...+..... ...|...|.+++|+|++. .+++++.|+.
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 222 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST---LAGHTDPVSSLAFSPDGGLLIASGSSDGT 222 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe---eccCCCceEEEEEcCCcceEEEEecCCCc
Confidence 445678899999999999999998888885 99999999987534333 233677899999999998 5555589999
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCee-eeEEcCCCCCe
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC-SLRIPAHKSDV 187 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~v 187 (409)
+++||...+..... ....|.... ...|++++..+++++.|+.+++|+...... ...+..|...+
T Consensus 223 i~~wd~~~~~~~~~--------------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v 287 (466)
T COG2319 223 IRLWDLSTGKLLRS--------------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV 287 (466)
T ss_pred EEEEECCCCcEEee--------------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccE
Confidence 99997774433221 011222233 228999998888999999999999987664 44446789999
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee--ccccceeEEEEcCCCCeEEEE-eCCCcEEEeeCCCCc
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM--GHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRKMS 264 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~ 264 (409)
.++.|. +++..+++++.|+.+.+||.+ ......... .|...+..+.+.+++..++.+ ..|+.+.+|++....
T Consensus 288 ~~~~~~-~~~~~~~~~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 288 LSVAFS-PDGKLLASGSSDGTVRLWDLE----TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEEEC-CCCCEEEEeeCCCcEEEEEcC----CCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 999999 577778778889999999864 444444443 677788999994332455555 678899999988732
Q ss_pred ccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEE-EeCCCeEEEEEcc
Q 015301 265 SNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT-GSSDNSVYIYDLV 343 (409)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-~~~dg~v~i~d~~ 343 (409)
.......... .....+++ ...+.. +..++.+.+|+..
T Consensus 363 ----------------------------------~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 400 (466)
T COG2319 363 ----------------------------------PLKTLEGHSN-------VLSVSFSP-DGRVVSSGSTDGTVRLWDLS 400 (466)
T ss_pred ----------------------------------eeEEecCCce-------EEEEEECC-CCCEEEEecCCCceEEEecc
Confidence 0111111110 23344555 333333 6889999999999
Q ss_pred CCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 344 SGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 344 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
..........+...+....+++++..+++++.++.+++|+...
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 401 TGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 8888777765547889999999999999999999999999987
No 190
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=3.2e-21 Score=158.50 Aligned_cols=248 Identities=19% Similarity=0.248 Sum_probs=175.3
Q ss_pred CCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCC--------CeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEE
Q 015301 139 DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA--------NKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCK 210 (409)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 210 (409)
..|...|..++|.|....|++++.||.|.+|+++. -+++.++.+|.++|.|+++. .++..+++|+.||+|+
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~-~n~~~~ysgg~Dg~I~ 369 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP-SNGEHCYSGGIDGTIR 369 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEec-CCceEEEeeccCceee
Confidence 34566799999999999999999999999999932 25677889999999999998 9999999999999999
Q ss_pred Eecccc------cccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccc--ccccc
Q 015301 211 VWDRRC------FISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYD--WDYRW 282 (409)
Q Consensus 211 iwd~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~ 282 (409)
.|++.. ..........+.+|.+.++.+++++....|++++.||++++|+................+. .+...
T Consensus 370 ~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~s 449 (577)
T KOG0642|consen 370 CWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTS 449 (577)
T ss_pred eeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeecc
Confidence 996531 1112234566889999999999999999999999999999999876544111111111111 11000
Q ss_pred ----ccccccce----eccccCccceeeeecccceee-eeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc
Q 015301 283 ----MEYPSYAR----RLKHPHDQSLATYKGHSVLRT-LIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF 353 (409)
Q Consensus 283 ----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 353 (409)
+....... .........+..+........ ....+.-+...|.+.+.+++-+|+.|+++|..+++++.....
T Consensus 450 s~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a 529 (577)
T KOG0642|consen 450 SRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVA 529 (577)
T ss_pred chhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheee
Confidence 00000000 000000111122211111000 001111223456678999999999999999999999999999
Q ss_pred CCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 354 HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 354 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
|...++++++.|+|.+|++++.||.+++|.+...
T Consensus 530 ~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 530 HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccceecceeecCCCceEEeecCCceeehhhccch
Confidence 9999999999999999999999999999998653
No 191
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=9.1e-20 Score=144.94 Aligned_cols=201 Identities=22% Similarity=0.209 Sum_probs=153.8
Q ss_pred EEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceee
Q 015301 146 FSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG 225 (409)
Q Consensus 146 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 225 (409)
..++|+.+|..+++++.||.+++|+..+...+.....|.+.|.++.|+ +++++|++.+.| ..+||+.+ .+..+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS-~dgk~lasig~d-~~~VW~~~----~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFS-PDGKFLASIGAD-SARVWSVN----TGAALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeC-CCCcEEEEecCC-ceEEEEec----cCchhh
Confidence 679999999999999999999999999888888888899999999999 999999999999 89999976 443333
Q ss_pred eee--ccccceeEEEEcCCC---C--eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcc
Q 015301 226 VLM--GHLEGITFIDSRRDG---R--YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQ 298 (409)
Q Consensus 226 ~~~--~~~~~v~~~~~~~~~---~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (409)
... ........+.|+.++ . .++....-+.|+.||+......
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-------------------------------- 269 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-------------------------------- 269 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc--------------------------------
Confidence 332 223345667787766 2 2333344567777776542211
Q ss_pred ceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEe-ccCCcceeeeEEecCcCeEEeecCCC
Q 015301 299 SLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL-DFHNAPVRDCCWHPIYPMLISSSWDC 377 (409)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg 377 (409)
..++... .......+.+++.|++|+++|.|+.||.|-|++..+.+.++.. +.|...|+.+.|+||.+++++.+.|.
T Consensus 270 --~~l~~~~-~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 270 --NFLRLRK-KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred --cccchhh-hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 0000000 0011123457789999999999999999999999999887766 47999999999999999999999999
Q ss_pred eEEEEecCCC
Q 015301 378 NIVRWEIPGI 387 (409)
Q Consensus 378 ~i~iw~~~~~ 387 (409)
...+..+.-.
T Consensus 347 ~~~v~~l~vd 356 (398)
T KOG0771|consen 347 EAAVTKLAVD 356 (398)
T ss_pred ceeEEEEeec
Confidence 9999988763
No 192
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.86 E-value=4.5e-18 Score=143.71 Aligned_cols=253 Identities=15% Similarity=0.181 Sum_probs=161.1
Q ss_pred CCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEEEcCC
Q 015301 39 MNSRVYTSQFSNDGSFFVAAS-QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVDVGS 116 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w~~~~ 116 (409)
+.+....++++|++++|++++ .++.|.+|+++....+...... .....+..++|+|++++|++++ .++.|.+|++++
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 446678899999999987664 5788999999733222211111 1222467899999999998876 488999999964
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCCCeeee-------EEcCCCCCeE
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKCSL-------RIPAHKSDVN 188 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~-------~~~~~~~~v~ 188 (409)
...... ..... .+...+..++++|+++++++++. ++.|.+||+.+...+. ... ......
T Consensus 112 ~g~~~~-~~~~~-----------~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~ 178 (330)
T PRK11028 112 DGIPVA-PIQII-----------EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPR 178 (330)
T ss_pred CCCCCC-ceeec-----------cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCc
Confidence 321111 00000 00113677889999998876654 6999999997633221 112 234467
Q ss_pred EEEEeCCCCcEEEEeeC-CCeEEEecccccccCCceeeeeecc------ccceeEEEEcCCCCeEEEEeC-CCcEEEeeC
Q 015301 189 TVCFADETGHLIFSGSD-DSLCKVWDRRCFISKGRANGVLMGH------LEGITFIDSRRDGRYFISNGK-DQTTKLWDI 260 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~ 260 (409)
.++|+ +++++++++.. ++.|.+|++............+..+ ......+.++|++++++++.. ++.|.+|++
T Consensus 179 ~~~~~-pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 179 HMVFH-PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred eEEEC-CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 89999 88898888776 8999999985211111222222211 112335889999999988864 789999998
Q ss_pred CCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-CCeEEE
Q 015301 261 RKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYI 339 (409)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v~i 339 (409)
..... ...+.++.... .......++|+|++|+++.. +++|.+
T Consensus 258 ~~~~~----------------------------------~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~~~~v~v 300 (330)
T PRK11028 258 SEDGS----------------------------------VLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQKSHHISV 300 (330)
T ss_pred eCCCC----------------------------------eEEEeEEEecc---ccCCceEECCCCCEEEEEEccCCcEEE
Confidence 65211 01111111000 11224578999999998876 899999
Q ss_pred EEcc
Q 015301 340 YDLV 343 (409)
Q Consensus 340 ~d~~ 343 (409)
|++.
T Consensus 301 ~~~~ 304 (330)
T PRK11028 301 YEID 304 (330)
T ss_pred EEEc
Confidence 9874
No 193
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.86 E-value=3.1e-21 Score=165.74 Aligned_cols=281 Identities=15% Similarity=0.232 Sum_probs=207.7
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
..|.||.++|+|+.|...|.++++|++|..++||..++..++. ...+|.+.|+.++.+.+..++++++.|..|++|.
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 3678999999999999999999999999999999998876555 4678888999999999999999999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE----c-CCCCCeE
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI----P-AHKSDVN 188 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~----~-~~~~~v~ 188 (409)
+..+....+.. +|++.|++++|+|-. +.+.||++++||.+ ..++... . ....-+.
T Consensus 261 l~~~~pvsvLr---------------ghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~ 320 (1113)
T KOG0644|consen 261 LPDGAPVSVLR---------------GHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVD 320 (1113)
T ss_pred cCCCchHHHHh---------------ccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCccccccee
Confidence 99887654433 677789999999954 66789999999987 2211111 1 1234556
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC-CCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD-GRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
.+.|. .++.-+++++.|+.-..|..... ..+...+.-+..+.+ ..+.+++-.+-.+.+|++-+
T Consensus 321 s~~~~-~~~~~f~Tgs~d~ea~n~e~~~l----------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~----- 384 (1113)
T KOG0644|consen 321 SILFE-NNGDRFLTGSRDGEARNHEFEQL----------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT----- 384 (1113)
T ss_pred eeecc-ccccccccccCCcccccchhhHh----------hhhccceEEEeccccccccceeeeeeeEeeeeeccc-----
Confidence 66776 78888999999999988885311 111111122222212 24556666778899999877
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCC-CCEEEEEeCCCeEEEEEccCCc
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA-QKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
+...+...+|... .+.+.++|- .+...+++.||...|||+-.|.
T Consensus 385 -----------------------------g~l~H~l~ghsd~------~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 385 -----------------------------GQLLHNLMGHSDE------VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred -----------------------------chhhhhhcccccc------eeeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence 3445555555533 233345553 3556678899999999999998
Q ss_pred eEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 347 QVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 347 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
+++...-....+.+.+||+||..++....-|.++|.....+.
T Consensus 430 pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 430 PIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred cceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 877665445667788999999998888778999998765443
No 194
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.86 E-value=8.9e-20 Score=149.40 Aligned_cols=209 Identities=18% Similarity=0.237 Sum_probs=162.0
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeee
Q 015301 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGL 132 (409)
Q Consensus 53 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 132 (409)
..|+.++.||.+.+.+-... + ......|.+.+.+-.|+|||.-|++++.||.|++|.-...-.......
T Consensus 76 d~~~i~s~DGkf~il~k~~r--V--E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~------- 144 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR--V--ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQN------- 144 (737)
T ss_pred ceEEEEcCCceEEEecccch--h--hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhc-------
Confidence 46888889999998875432 2 223456777999999999999999999999999998654332211111
Q ss_pred eeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEe
Q 015301 133 DFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVW 212 (409)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 212 (409)
..+|+|++|.|+.+.++.+. .+.+.|=-+.....+...+.|.+-|.++.|+ +..+++++|++|-..++|
T Consensus 145 ---------~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~-~~s~lI~sgGED~kfKvW 213 (737)
T KOG1524|consen 145 ---------EESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWS-TQSNIIASGGEDFRFKIW 213 (737)
T ss_pred ---------CceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecC-ccccceeecCCceeEEee
Confidence 12699999999888776654 4678887777776777789999999999999 889999999999999999
Q ss_pred cccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceec
Q 015301 213 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 292 (409)
Q Consensus 213 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (409)
|- .+..+.....|..+|++++|+|+ +.++.++.. ++++=..+
T Consensus 214 D~-----~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~~~p~------------------------------- 255 (737)
T KOG1524|consen 214 DA-----QGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARFSSPR------------------------------- 255 (737)
T ss_pred cc-----cCcccccCChhccceeeeeeccc-cceeeeeee-eeeecCCC-------------------------------
Confidence 94 67888888889999999999999 556655543 34421111
Q ss_pred cccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEE
Q 015301 293 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d 341 (409)
...+++++||+||..+++|+..|.+.+-.
T Consensus 256 --------------------~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 256 --------------------VGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred --------------------ccceEEEEEcCCCceeeccccCceEEEee
Confidence 25678889999999999999999876543
No 195
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.86 E-value=1.9e-17 Score=129.69 Aligned_cols=234 Identities=15% Similarity=0.181 Sum_probs=167.4
Q ss_pred eeeEEecCceeEeeccceEEEEeeec--CCCceeecCCCCeEEEEECCCCCEEEEEeCC--CcEEEEEcCCCeeeeeeee
Q 015301 5 REVNYSGRGRFSAADSCHVLSRYLPV--NGPWKVDGMNSRVYTSQFSNDGSFFVAASQE--SNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~--~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d--~~i~vw~~~~~~~~~~~~~ 80 (409)
....|..|..++..+.......+... ..........-.|.-+-||. .++|..+.+ +.+++.++..+..+....
T Consensus 9 ~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~- 85 (391)
T KOG2110|consen 9 NFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIF- 85 (391)
T ss_pred eeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEe-
Confidence 34556677777776665544333222 11111222234466667764 566666554 459999998775554432
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (409)
... .|.++.++. +.|+++-. ..|+|||+.+.+.......... +..++.++.+++.+.+++.-
T Consensus 86 fpt---~IL~VrmNr--~RLvV~Le-e~IyIydI~~MklLhTI~t~~~------------n~~gl~AlS~n~~n~ylAyp 147 (391)
T KOG2110|consen 86 FPT---SILAVRMNR--KRLVVCLE-ESIYIYDIKDMKLLHTIETTPP------------NPKGLCALSPNNANCYLAYP 147 (391)
T ss_pred cCC---ceEEEEEcc--ceEEEEEc-ccEEEEecccceeehhhhccCC------------CccceEeeccCCCCceEEec
Confidence 333 699999874 45666654 4499999998876544333221 22357777777777788864
Q ss_pred Ee--cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCe-EEEecccccccCCceeeeeeccc--ccee
Q 015301 161 GS--DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSL-CKVWDRRCFISKGRANGVLMGHL--EGIT 235 (409)
Q Consensus 161 ~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~--~~v~ 235 (409)
+. .|.|.+||..+-+++..+..|.+++.+++|+ ++|.+||+++..|+ ||++.+ ..++.+..++... ..|.
T Consensus 148 ~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs-~~G~llATASeKGTVIRVf~v----~~G~kl~eFRRG~~~~~Iy 222 (391)
T KOG2110|consen 148 GSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFS-PDGTLLATASEKGTVIRVFSV----PEGQKLYEFRRGTYPVSIY 222 (391)
T ss_pred CCCCCceEEEEEcccceeeeEEEecCCceeEEEEC-CCCCEEEEeccCceEEEEEEc----CCccEeeeeeCCceeeEEE
Confidence 43 6899999999999999999999999999999 99999999999998 689996 4777777776543 4678
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEeeCCCCc
Q 015301 236 FIDSRRDGRYFISNGKDQTTKLWDIRKMS 264 (409)
Q Consensus 236 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 264 (409)
+++|+|++++|.+.+..++|.+|.+....
T Consensus 223 SL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 223 SLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 99999999999999999999999998755
No 196
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.85 E-value=1.3e-19 Score=157.54 Aligned_cols=235 Identities=19% Similarity=0.203 Sum_probs=161.8
Q ss_pred CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC---CEEEEEEcCCCccccccceeceeeeeeeecC
Q 015301 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---AIVNIVDVGSSARESLANVTEIHKGLDFSAD 137 (409)
Q Consensus 61 d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (409)
+..|.+||.+... .... ..+...+.+.+|+|||+.|+.++.+ ..|++||+.+++........
T Consensus 183 ~~~i~i~d~dg~~-~~~l---t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~----------- 247 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIV---NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR----------- 247 (429)
T ss_pred eEEEEEECCCCCC-ceEe---ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-----------
Confidence 4689999987653 2222 2344579999999999999988654 47999999876543222111
Q ss_pred CCCcceeeEEEEEcCCCCeEEEEE-ecCeE--EEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEe-eCCCeEEEec
Q 015301 138 GDEDEFGIFSVKFSTDGQELVAAG-SDNFI--YVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSG-SDDSLCKVWD 213 (409)
Q Consensus 138 ~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i--~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iwd 213 (409)
+ ....++|+|||+.|+.+. .+|.+ ++||+.+++. ..+..+...+....|+ |+++.|+.+ ..+|...||+
T Consensus 248 --g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wS-pDG~~i~f~s~~~g~~~I~~ 320 (429)
T PRK01742 248 --G---HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWS-PDGQSILFTSDRSGSPQVYR 320 (429)
T ss_pred --C---ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEEC-CCCCEEEEEECCCCCceEEE
Confidence 1 134689999999888765 46754 4557766654 4556677778899999 788766654 4678889998
Q ss_pred ccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceecc
Q 015301 214 RRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK 293 (409)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (409)
+.. .+.....+ .+.. ....|+|+|++|+..+.++ +.+||+.+....
T Consensus 321 ~~~---~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~--------------------------- 366 (429)
T PRK01742 321 MSA---SGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE--------------------------- 366 (429)
T ss_pred EEC---CCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE---------------------------
Confidence 652 12222222 3333 4578999999998887765 666898763211
Q ss_pred ccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc--CCceEEEeccCCcceeeeEEecC
Q 015301 294 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV--SGAQVAKLDFHNAPVRDCCWHPI 366 (409)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~--~~~~~~~~~~~~~~v~~~~~s~~ 366 (409)
.+.... ...++.|+|||++|+.++.++.+.+|++. +++.+..+..|.+.+...+|+|-
T Consensus 367 --------~lt~~~-------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 367 --------VLSSTF-------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred --------EecCCC-------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 111000 01356799999999999999988888763 57888889888888999999984
No 197
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=1.6e-19 Score=136.48 Aligned_cols=209 Identities=17% Similarity=0.250 Sum_probs=160.8
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee---cccccceEEEEEeCC--CCcEEEEEecCCEEEEE
Q 015301 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE---TKALRWTITDTSLSP--DQRFLVYASICAIVNIV 112 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~---~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~~w 112 (409)
.+-+.|.|+.|.|++..+|+-. |..|.+|+++.+..+..... ..++....++-+|+| +++.+++.+ |++++.|
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEE
Confidence 4567999999999999999876 77899999988755322111 122445688889999 688888665 8999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC-eEEEEEecCeEEEEECCC-CeeeeEEcCCCCCeEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ-ELVAAGSDNFIYVYDLQA-NKCSLRIPAHKSDVNTV 190 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~v~~~ 190 (409)
|+++....... . ..|...|..+.|+|+.+ +|++|+.||.|++||.+. ..++..+.+|...|.++
T Consensus 199 D~RT~~~~~sI--~------------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~V 264 (370)
T KOG1007|consen 199 DLRTMKKNNSI--E------------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAV 264 (370)
T ss_pred Eccchhhhcch--h------------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEE
Confidence 99977653222 2 23455799999999765 578889999999999975 45788899999999999
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccc-------------------------cCCceeeeeeccccceeEEEEcCC-CC
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFI-------------------------SKGRANGVLMGHLEGITFIDSRRD-GR 244 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------------------------~~~~~~~~~~~~~~~v~~~~~~~~-~~ 244 (409)
.|+|....++++|+.|..|.+|...... -....+..+..|.+.|.+++|+.- .-
T Consensus 265 Rfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPW 344 (370)
T KOG1007|consen 265 RFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPW 344 (370)
T ss_pred EecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCe
Confidence 9998889999999999999999753110 011234456779999999999874 45
Q ss_pred eEEEEeCCCcEEEeeCCC
Q 015301 245 YFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 245 ~l~~~~~dg~i~iwd~~~ 262 (409)
.|++-+.||++.|=.+..
T Consensus 345 iFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 345 IFASLSYDGRVIISSVPR 362 (370)
T ss_pred eEEEeccCceEEeecCCh
Confidence 678889999998876643
No 198
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.5e-19 Score=142.56 Aligned_cols=263 Identities=13% Similarity=0.114 Sum_probs=186.1
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (409)
..+|.+.|+++.|+.++++|++|+.|..+++|+++..-.....+. +......|...|.|++|......+++|
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KP--------I~~~~~~H~SNIF~L~F~~~N~~~~SG 123 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKP--------IGVMEHPHRSNIFSLEFDLENRFLYSG 123 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCC--------ceeccCccccceEEEEEccCCeeEecC
Confidence 456888999999999999999999999999999975433222211 111223556689999999999999999
Q ss_pred EecCeEEEEECCCCeeeeEEcC--CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEE
Q 015301 161 GSDNFIYVYDLQANKCSLRIPA--HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 238 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (409)
..+++|...|+++.+.+..+.. ..+.|..+..+ |..+.|++.+.++.|.+||.|.......+.. ..........+.
T Consensus 124 ~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~-P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~-~AN~~~~F~t~~ 201 (609)
T KOG4227|consen 124 ERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQH-PTDNTLIVVTRAKLVSFIDNRDRQNPISLVL-PANSGKNFYTAE 201 (609)
T ss_pred CCcceeEeeecccceeeeeecccCcccceeecccC-CCCceEEEEecCceEEEEeccCCCCCCceee-ecCCCccceeee
Confidence 9999999999999988776642 33589999999 5688999999999999999884322222222 223345567788
Q ss_pred EcCC-CCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEE
Q 015301 239 SRRD-GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 317 (409)
Q Consensus 239 ~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (409)
|+|. ..+|++.+..+-+-+||.+....... .+.+............
T Consensus 202 F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~---------------------------------~~~~~~~L~~~~~~~M 248 (609)
T KOG4227|consen 202 FHPETPALILVNSETGGPNVFDRRMQARPVY---------------------------------QRSMFKGLPQENTEWM 248 (609)
T ss_pred ecCCCceeEEeccccCCCCceeeccccchHH---------------------------------hhhccccCcccchhhh
Confidence 9985 45778888888999999988443221 1111111111111123
Q ss_pred eeeecCCCCEEEEEeCCCeEEEEEccCCce-EEEeccCC-------cceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 318 SPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ-VAKLDFHN-------APVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 318 ~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~-------~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
+..|+|+|..|++--....-.+||+.+.++ +..+. |. ..+.+++|..|. .+++|+.+-.|++|.++...
T Consensus 249 ~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 249 GSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRAN 325 (609)
T ss_pred heeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCc
Confidence 446888898888776666667888876443 33333 32 256778887654 49999999999999997543
No 199
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=2.9e-19 Score=141.29 Aligned_cols=273 Identities=13% Similarity=0.216 Sum_probs=190.7
Q ss_pred ceEEEEEeCCCCc-EEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC
Q 015301 86 WTITDTSLSPDQR-FLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN 164 (409)
Q Consensus 86 ~~v~~~~~s~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 164 (409)
.+|..+.|.++.. .|++|+.|..|++|.+......... ..+.+......|...|+++.|+|+|..|++|+.+|
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~------~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g 87 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD------MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGG 87 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCc------eeEEEeecccCCcceeEEEEEcCCcCeeeecCCCc
Confidence 3799999998776 9999999999999999766543211 23445666678888999999999999999999999
Q ss_pred eEEEEECC--------C--------CeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee
Q 015301 165 FIYVYDLQ--------A--------NKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM 228 (409)
Q Consensus 165 ~i~v~d~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 228 (409)
.|.+|-.. + ......+.+|...|..++|+ ++++++++++.|..+++||++ .+.....+.
T Consensus 88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws-~d~~~l~s~s~dns~~l~Dv~----~G~l~~~~~ 162 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS-PDSNFLVSGSVDNSVRLWDVH----AGQLLAILD 162 (434)
T ss_pred eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc-CCCceeeeeeccceEEEEEec----cceeEeecc
Confidence 99999765 2 12234567899999999999 899999999999999999976 889999999
Q ss_pred ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccc
Q 015301 229 GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV 308 (409)
Q Consensus 229 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (409)
.|...+..++|.|-++++++-+.|...+.+.+............. ..........+...+.+...
T Consensus 163 dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~-------------m~~~~~~~~e~~s~rLfhDe-- 227 (434)
T KOG1009|consen 163 DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDI-------------MPAKAFNEREGKSTRLFHDE-- 227 (434)
T ss_pred ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeE-------------eeecccCCCCcceeeeeecC--
Confidence 999999999999999999999999877777765432221111000 00000000111112222111
Q ss_pred eeeeeEEEEeeeecCCCCEEEEEeC----CC-----eEEEEEccC-CceEEEeccCCcceeeeEEecC------------
Q 015301 309 LRTLIRCYFSPEYSTAQKYIYTGSS----DN-----SVYIYDLVS-GAQVAKLDFHNAPVRDCCWHPI------------ 366 (409)
Q Consensus 309 ~~~~~~~~~~~~~s~~~~~l~~~~~----dg-----~v~i~d~~~-~~~~~~~~~~~~~v~~~~~s~~------------ 366 (409)
+.......++|+|+|.+|++... .+ ..++|+-.. .+++..+.....++..+.|+|-
T Consensus 228 --TlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~ 305 (434)
T KOG1009|consen 228 --TLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKF 305 (434)
T ss_pred --chhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccccccc
Confidence 12233445678999999998653 22 345665443 2456666666666666666551
Q ss_pred ------cCeEEeecCCCeEEEEecCCC
Q 015301 367 ------YPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 367 ------~~~l~s~~~dg~i~iw~~~~~ 387 (409)
+-.++.++ ...|++||.+..
T Consensus 306 ~~~lpyrlvfaiAt-~~svyvydtq~~ 331 (434)
T KOG1009|consen 306 LFVLPYRLVFAIAT-KNSVYVYDTQTL 331 (434)
T ss_pred ccccccceEEEEee-cceEEEeccccc
Confidence 12344554 458999998763
No 200
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1e-18 Score=128.99 Aligned_cols=258 Identities=14% Similarity=0.246 Sum_probs=174.5
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeE
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 166 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 166 (409)
.|.+-+|+|.+++|++|..+|.|.+..+.+-........ +....-....|.++++.++|. ..+|++|+ ||.|
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~-----gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V 83 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPP-----GKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLV 83 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCC-----CCcceeeccccCCCeeeeeee--hhheeecc-CceE
Confidence 466678999999999999999999999875432211110 000111125788899999997 34566665 5999
Q ss_pred EEEECCCCee------eeE--EcCCC-----CCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccc
Q 015301 167 YVYDLQANKC------SLR--IPAHK-----SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEG 233 (409)
Q Consensus 167 ~v~d~~~~~~------~~~--~~~~~-----~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 233 (409)
+-|..+.... +.. .+.|. -.|++|...|..+.+| .++.|+.++-||+ +.++....+++|.+.
T Consensus 84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dl----E~G~i~r~~rGHtDY 158 (325)
T KOG0649|consen 84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDL----EDGRIQREYRGHTDY 158 (325)
T ss_pred EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecCCeEEEEEEe----cCCEEEEEEcCCcce
Confidence 9998754322 111 12222 3578888885555555 4458999999996 489999999999999
Q ss_pred eeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeee
Q 015301 234 ITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLI 313 (409)
Q Consensus 234 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (409)
+.++.--.....+++|++||++++||+++.++......... ...++.+- -
T Consensus 159 vH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~-------------------------~~~lRp~~-----g 208 (325)
T KOG0649|consen 159 VHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKN-------------------------PNLLRPDW-----G 208 (325)
T ss_pred eeeeeecccCcceeecCCCccEEEEeccccceeEEeccccC-------------------------hhhcCccc-----C
Confidence 99999855556799999999999999999655433321100 00011110 0
Q ss_pred EEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcccCCC
Q 015301 314 RCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAPLP 393 (409)
Q Consensus 314 ~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 393 (409)
. |-.+..-+..+|++|+. ..+.+|++++.++...+. -..+|..+.|.. ..+++++.-+.|.-|.+....+...|
T Consensus 209 ~--wigala~~edWlvCGgG-p~lslwhLrsse~t~vfp-ipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~Gvl~a~ip 282 (325)
T KOG0649|consen 209 K--WIGALAVNEDWLVCGGG-PKLSLWHLRSSESTCVFP-IPARVHLVDFVD--DCVLIGGEGNHVQSYTLNGVLQANIP 282 (325)
T ss_pred c--eeEEEeccCceEEecCC-CceeEEeccCCCceEEEe-cccceeEeeeec--ceEEEeccccceeeeeeccEEEEecc
Confidence 1 11233445678888865 468999999999888876 456788888854 46777887788999988765554433
No 201
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.83 E-value=1.5e-18 Score=133.19 Aligned_cols=255 Identities=13% Similarity=0.123 Sum_probs=177.0
Q ss_pred ceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCe
Q 015301 86 WTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF 165 (409)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 165 (409)
.+|+|.+|++|...+|++.....|.||.......-...... ..|...|+.++|+|..+.|++++.|..
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl------------s~Hd~~vtgvdWap~snrIvtcs~drn 78 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL------------SEHDKIVTGVDWAPKSNRIVTCSHDRN 78 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceeh------------hhhCcceeEEeecCCCCceeEccCCCC
Confidence 38999999999999999999999999998877632222222 245557999999999999999999999
Q ss_pred EEEEEC-CCC--eeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC
Q 015301 166 IYVYDL-QAN--KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD 242 (409)
Q Consensus 166 i~v~d~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 242 (409)
-++|.. ..+ ++...+..++...+++.|+ |.++.|++|+....|.||-+.....-......-+.+...|.+++|+|+
T Consensus 79 ayVw~~~~~~~WkptlvLlRiNrAAt~V~Ws-P~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn 157 (361)
T KOG1523|consen 79 AYVWTQPSGGTWKPTLVLLRINRAATCVKWS-PKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN 157 (361)
T ss_pred ccccccCCCCeeccceeEEEeccceeeEeec-CcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence 999998 333 3444566789999999999 899999999999999999864211111122334456788999999999
Q ss_pred CCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeec
Q 015301 243 GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYS 322 (409)
Q Consensus 243 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 322 (409)
+-+|++|+.|+..+++..--.... .......|. -..+-+..+..+.. .-..+....|+
T Consensus 158 nVLlaaGs~D~k~rVfSayIK~Vd----ekpap~pWg------------sk~PFG~lm~E~~~------~ggwvh~v~fs 215 (361)
T KOG1523|consen 158 NVLLAAGSTDGKCRVFSAYIKGVD----EKPAPTPWG------------SKMPFGQLMSEASS------SGGWVHGVLFS 215 (361)
T ss_pred cceecccccCcceeEEEEeeeccc----cCCCCCCCc------------cCCcHHHHHHhhcc------CCCceeeeEeC
Confidence 999999999999999864210000 000000010 00011222222221 11345667899
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCc-eEEEeccCCcceeeeEEecCcCeEEeecCC
Q 015301 323 TAQKYIYTGSSDNSVYIYDLVSGA-QVAKLDFHNAPVRDCCWHPIYPMLISSSWD 376 (409)
Q Consensus 323 ~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 376 (409)
|+|..|+-.+.|+.+.+-|..... .+..+....-+..++.|-.+. .++.++.|
T Consensus 216 ~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 216 PSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred CCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC-ceeecCCC
Confidence 999999999999999999987664 344444334677777776543 34444444
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.3e-19 Score=144.09 Aligned_cols=197 Identities=18% Similarity=0.199 Sum_probs=145.4
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccccc
Q 015301 44 YTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLA 123 (409)
Q Consensus 44 ~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 123 (409)
.+++|+++|..|++++.||++|||+..+...+. ....|...|.++.|+|||+.|++.+.| ..+||++.++......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l---~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL---EEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh---hhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 789999999999999999999999987654433 345566689999999999999999999 8999999998443332
Q ss_pred ceeceeeeeeeecCCCCcceeeEEEEEcCCC---CeEEEE--EecCeEEEEECCCCee-----eeEEcCCCCCeEEEEEe
Q 015301 124 NVTEIHKGLDFSADGDEDEFGIFSVKFSTDG---QELVAA--GSDNFIYVYDLQANKC-----SLRIPAHKSDVNTVCFA 193 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~--~~d~~i~v~d~~~~~~-----~~~~~~~~~~v~~~~~~ 193 (409)
..... ......+.|+.++ .+.+.+ ...+.|..||+...+. ..+.......|++++.+
T Consensus 224 t~~~k-------------~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS 290 (398)
T KOG0771|consen 224 TPFSK-------------DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS 290 (398)
T ss_pred CCccc-------------chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc
Confidence 22111 1235667777766 333322 2345566666533221 11111234579999999
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCcee-eeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRAN-GVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
.+|++++.|+.||.|.|++.. ..+.. ..-+.|..-|+.+.|+|+.+++++.+.|.+..+..+.-
T Consensus 291 -~dGkf~AlGT~dGsVai~~~~----~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 291 -DDGKFLALGTMDGSVAIYDAK----SLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred -CCCcEEEEeccCCcEEEEEec----eeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999999964 33333 34467999999999999999999999999888887654
No 203
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.83 E-value=3.7e-19 Score=132.81 Aligned_cols=287 Identities=12% Similarity=0.070 Sum_probs=180.5
Q ss_pred eeEEecCceeEee--ccceEEEEeeecCCCceee-cCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecc
Q 015301 6 EVNYSGRGRFSAA--DSCHVLSRYLPVNGPWKVD-GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK 82 (409)
Q Consensus 6 ~~~~s~dg~~~~~--~~~~~~~~~~~~~~~~~l~-~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~ 82 (409)
++.|-.+++.... .+....|.+........+. .|...|+.+.--|+ ..|.+-+.|+.+.+|++..+.-+..
T Consensus 19 s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i----- 92 (323)
T KOG0322|consen 19 SVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISI----- 92 (323)
T ss_pred ehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEE-----
Confidence 4555555654333 2234556666666666777 67789999999997 5688888999999999987533222
Q ss_pred cccceEEEEEeCCCCcEEEEEecCC-EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCC--eEE
Q 015301 83 ALRWTITDTSLSPDQRFLVYASICA-IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQ--ELV 158 (409)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~dg-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~--~l~ 158 (409)
|.-.++++.|.+.. +...+... ..-.++-+...............-....+......+.+.+..+.- .+. +++
T Consensus 93 -~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lll 169 (323)
T KOG0322|consen 93 -HSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLL 169 (323)
T ss_pred -eeeeccccccccce--eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEE
Confidence 22245555555421 11111111 111111111000000000000000000111112334577766433 233 456
Q ss_pred EEEecCeEEEEECCCCee----------eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee
Q 015301 159 AAGSDNFIYVYDLQANKC----------SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM 228 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 228 (409)
+|..+|.+.+||+.++.. ......|..+|.++.|. +.-+.=++|+.+..+..|.+..............
T Consensus 170 aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldya-s~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~ 248 (323)
T KOG0322|consen 170 AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYA-SSCDRGISGGADDKLVMYSLNHSTGSLQIRKEIT 248 (323)
T ss_pred EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeec-hhhcCCcCCCccccceeeeeccccCcccccceEE
Confidence 777799999999998733 33345799999999998 5555567788888899998763322223333333
Q ss_pred ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccc
Q 015301 229 GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV 308 (409)
Q Consensus 229 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (409)
-..-.|..+..-||++.+++++.|++|++|+-++ ..++..++-|.
T Consensus 249 lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt----------------------------------l~pLAVLkyHs- 293 (323)
T KOG0322|consen 249 LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT----------------------------------LNPLAVLKYHS- 293 (323)
T ss_pred ecCCCccceEEccCCcEEeecccCCcEEEEEecc----------------------------------CCchhhhhhhh-
Confidence 3456788999999999999999999999999998 46677777777
Q ss_pred eeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEc
Q 015301 309 LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 342 (409)
Q Consensus 309 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~ 342 (409)
..+.+++|+|+..++|+++.|++|.+|++
T Consensus 294 -----agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 294 -----AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred -----cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 44567789999999999999999999986
No 204
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.83 E-value=9e-19 Score=143.61 Aligned_cols=264 Identities=13% Similarity=0.152 Sum_probs=180.4
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC-------CCcEEEEEecCCEEE
Q 015301 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-------DQRFLVYASICAIVN 110 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i~ 110 (409)
-|...|.|+.|+.+...+.+++++..+.-|++.+. .......... .-.+.+-.-+ ....++.++.||.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p~d--f~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKLPDD--FVPTDMHLGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhCCcc--cCCccccccccccCCCCCcceEEEEcCCceEE
Confidence 57777889999988887777665554445555433 1111110100 0111111111 235788889999998
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEE
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTV 190 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~ 190 (409)
+.+-...-. ... ..|.+.+.+-.|+|+|.-|++++.||.|++|.- +|-...++.....+|.|+
T Consensus 89 il~k~~rVE----~sv------------~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 89 ILNKSARVE----RSI------------SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCA 151 (737)
T ss_pred Eecccchhh----hhh------------hhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEE
Confidence 876433211 111 245668999999999999999999999999994 555555555567899999
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccc
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDN 270 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 270 (409)
+|.|...+.+++.+ +.+.|=.+. ....+...+.|.+-|.++.|++..+++++|++|-..++||-..
T Consensus 152 ~W~p~S~~vl~c~g--~h~~IKpL~----~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-------- 217 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQG--GHISIKPLA----ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-------- 217 (737)
T ss_pred EECCCCCceEEecC--CeEEEeecc----cccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC--------
Confidence 99966666666654 455555542 4555667889999999999999999999999999999999653
Q ss_pred ccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEE
Q 015301 271 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK 350 (409)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 350 (409)
..+..-..|. ..+.+++|.|+ +.++.++.+ +++ -
T Consensus 218 ---------------------------~~Lf~S~~~e------y~ITSva~npd-~~~~v~S~n-t~R-----------~ 251 (737)
T KOG1524|consen 218 ---------------------------ANLFTSAAEE------YAITSVAFNPE-KDYLLWSYN-TAR-----------F 251 (737)
T ss_pred ---------------------------cccccCChhc------cceeeeeeccc-cceeeeeee-eee-----------e
Confidence 3333333444 34567789898 666666543 233 1
Q ss_pred eccCCcceeeeEEecCcCeEEeecCCCeEEE
Q 015301 351 LDFHNAPVRDCCWHPIYPMLISSSWDCNIVR 381 (409)
Q Consensus 351 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 381 (409)
-+...+.|..++||+||..++.|+..|.+.+
T Consensus 252 ~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 252 SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 1234578999999999999999998888765
No 205
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.83 E-value=1e-16 Score=134.67 Aligned_cols=309 Identities=15% Similarity=0.113 Sum_probs=182.9
Q ss_pred CEE-EEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeee
Q 015301 53 SFF-VAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKG 131 (409)
Q Consensus 53 ~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (409)
+++ ++-..++.|.|.|.++.+.+........ .-..+.|+||++++.+++.||.|.++|+.+.+.........
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~---~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---- 78 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGA---PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG---- 78 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STT---EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS----
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCC---ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC----
Confidence 444 4556689999999998866665443322 33457899999999999999999999999988544433222
Q ss_pred eeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCCCeeeeEEcCC-------CCCeEEEEEeCCCCcEEEEe
Q 015301 132 LDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKCSLRIPAH-------KSDVNTVCFADETGHLIFSG 203 (409)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~ 203 (409)
....+++++||+++++++. .+.+.++|.++.++++.++.. ...+..+..+|....++++.
T Consensus 79 ------------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 79 ------------NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp ------------EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred ------------CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence 4678999999999988764 799999999999998887532 34677888884545566666
Q ss_pred eCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEE-eCCCcEEEeeCCCCcccccccccccccc-----
Q 015301 204 SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRKMSSNTTDNSRLRDYD----- 277 (409)
Q Consensus 204 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~----- 277 (409)
-+.+.|.+.|... ...................|+|++++++++ ..++.|.++|..+...............
T Consensus 147 kd~~~I~vVdy~d---~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~ 223 (369)
T PF02239_consen 147 KDTGEIWVVDYSD---PKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGAN 223 (369)
T ss_dssp TTTTEEEEEETTT---SSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEE
T ss_pred ccCCeEEEEEecc---ccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccccccc
Confidence 6668888888642 122222223334556788999999987665 4567899999887654433221111000
Q ss_pred ---------cccccccc------cccc-eeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEE----eCCCeE
Q 015301 278 ---------WDYRWMEY------PSYA-RRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG----SSDNSV 337 (409)
Q Consensus 278 ---------~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~----~~dg~v 337 (409)
|....... .... ........+.++.+...... .-+..+|+++++.+. ...+.|
T Consensus 224 ~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-------lFi~thP~s~~vwvd~~~~~~~~~v 296 (369)
T PF02239_consen 224 FPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-------LFIKTHPDSRYVWVDTFLNPDADTV 296 (369)
T ss_dssp EEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---------EE--TT-SEEEEE-TT-SSHT-E
T ss_pred ccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-------ceeecCCCCccEEeeccCCCCCceE
Confidence 10000000 0000 00111222333333332211 233568999999998 445899
Q ss_pred EEEEccCCceEEEeccC-CcceeeeEEecCcCeEEeec--CCCeEEEEecCCCccc
Q 015301 338 YIYDLVSGAQVAKLDFH-NAPVRDCCWHPIYPMLISSS--WDCNIVRWEIPGIGEA 390 (409)
Q Consensus 338 ~i~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~--~dg~i~iw~~~~~~~~ 390 (409)
.++|.++.+.+.++... ...+..+.|+++|+.+..+. .+|.|.+||..+.++.
T Consensus 297 ~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 297 QVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp EEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred EEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence 99999999888887532 23589999999999555443 3447999999887654
No 206
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.82 E-value=1.8e-18 Score=141.77 Aligned_cols=252 Identities=16% Similarity=0.172 Sum_probs=171.8
Q ss_pred EEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEE-----cCCCCeEEEEEe
Q 015301 88 ITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKF-----STDGQELVAAGS 162 (409)
Q Consensus 88 v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~ 162 (409)
+....++-.|.+|+..- ...+.+|+...+........... +... ...|-+| .|.+--+++|-.
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~-----y~gt------~P~cHdfn~~~a~~~g~dllIGf~ 193 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKRE-----YKGT------SPTCHDFNSFTATPKGLDLLIGFT 193 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhc-----ccCC------CCceecccccccCCCCcceEEeec
Confidence 44445555677776543 35688888875322111110000 1100 1333344 346667888888
Q ss_pred cCeEEEEECCCCeeeeEE----cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccccccc-------------------
Q 015301 163 DNFIYVYDLQANKCSLRI----PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFIS------------------- 219 (409)
Q Consensus 163 d~~i~v~d~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------------- 219 (409)
-|.|.+.|....+..+.+ ......|+++.|-|.+...++++-.+|.+++||......
T Consensus 194 tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t 273 (636)
T KOG2394|consen 194 TGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILT 273 (636)
T ss_pred cCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEee
Confidence 899999987663322212 123478999999988888899999999999997531000
Q ss_pred -----CCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccc
Q 015301 220 -----KGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 294 (409)
Q Consensus 220 -----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (409)
...++..+.--.+.|...+|+|||++|++.+.||.++|||..+.+
T Consensus 274 ~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e------------------------------ 323 (636)
T KOG2394|consen 274 SKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE------------------------------ 323 (636)
T ss_pred eeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH------------------------------
Confidence 001122222234578899999999999999999999999998732
Q ss_pred cCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEec---------
Q 015301 295 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHP--------- 365 (409)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~--------- 365 (409)
.+..++. ......+++|||||+||++|++|--|.||.+..++.+..-++|.+.|+.++|.|
T Consensus 324 ----Llg~mkS------YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~ 393 (636)
T KOG2394|consen 324 ----LLGVMKS------YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWN 393 (636)
T ss_pred ----HHHHHHh------hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeeccccccccccc
Confidence 1111211 123345668999999999999999999999999999999999999999999982
Q ss_pred ----------------------C----c-------------CeEEeecCCCeEEEEecCCCcccC
Q 015301 366 ----------------------I----Y-------------PMLISSSWDCNIVRWEIPGIGEAP 391 (409)
Q Consensus 366 ----------------------~----~-------------~~l~s~~~dg~i~iw~~~~~~~~~ 391 (409)
+ + -.+.+.+.|-.+.+||+......+
T Consensus 394 ~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 394 NFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred ccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 0 1 146788899999999998755443
No 207
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.82 E-value=3.7e-20 Score=159.25 Aligned_cols=239 Identities=18% Similarity=0.316 Sum_probs=168.8
Q ss_pred CCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccc
Q 015301 139 DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 218 (409)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 218 (409)
.+|...|+|+.|...|.++++|+.|..++||.++++.++....+|.+.|+.++.+ .+..++++++.|..|++|.++
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs-~~n~~iaaaS~D~vIrvWrl~--- 262 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVS-SNNTMIAAASNDKVIRVWRLP--- 262 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccc-hhhhhhhhcccCceEEEEecC---
Confidence 4788889999999999999999999999999999999999999999999999998 888899999999999999965
Q ss_pred cCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccccccc----ccc-cceecc
Q 015301 219 SKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME----YPS-YARRLK 293 (409)
Q Consensus 219 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~ 293 (409)
.+.++..+.+|.+.|++++|+|-. +.+.||++++||.+- ...... .....+....+. +.. ......
T Consensus 263 -~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~-~~~~y~---prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 263 -DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-EPRIYV---PRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred -CCchHHHHhccccceeeeccCccc----cCCCCCceEeccccc-cccccC---CCCCCcccccceeeeecccccccccc
Confidence 889999999999999999999954 778899999999882 111100 000000000000 000 000000
Q ss_pred ccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcC-eEEe
Q 015301 294 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP-MLIS 372 (409)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s 372 (409)
..........+...........+|....+.-..+.+++-.+-.+.+|++.+|...+.+.+|...+..+.++|-+. ...+
T Consensus 334 gs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ms 413 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMS 413 (1113)
T ss_pred ccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhh
Confidence 000000000000000000011112111111124666677788899999999999999999999999999999776 5668
Q ss_pred ecCCCeEEEEecCCCccc
Q 015301 373 SSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 373 ~~~dg~i~iw~~~~~~~~ 390 (409)
++.||...|||+..+...
T Consensus 414 ag~dgst~iwdi~eg~pi 431 (1113)
T KOG0644|consen 414 AGYDGSTIIWDIWEGIPI 431 (1113)
T ss_pred ccCCCceEeeecccCCcc
Confidence 999999999999876543
No 208
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.4e-17 Score=137.85 Aligned_cols=293 Identities=18% Similarity=0.261 Sum_probs=200.6
Q ss_pred cCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCC
Q 015301 38 GMNSRVYTSQFSNDGSFF-VAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGS 116 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~ 116 (409)
+|...-+.|..+|||+|+ |||..--.|++||+..- .+.....+ ....|.-.-.+.|-..++.-..|..|.+-.-..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL-SLKFERhl--Dae~V~feiLsDD~SK~v~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL-SLKFERHL--DAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccc-eeeeeecc--cccceeEEEeccchhhheEeecCceeeehhhcC
Confidence 678888999999999986 67777889999999764 22221111 222455555566666666666777776543221
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCC
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADET 196 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 196 (409)
... ...++. .-..++++.-..-|++++....|+-++++.|..+..+....+.++++..+ +.
T Consensus 126 ~hy--~~RIP~----------------~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in-~~ 186 (703)
T KOG2321|consen 126 RHY--RTRIPK----------------FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSIN-EE 186 (703)
T ss_pred eee--eeecCc----------------CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeec-Cc
Confidence 110 011111 23456666544445566667789999999999999998888999999999 77
Q ss_pred CcEEEEeeCCCeEEEecccccccCCc--eeeeeecccc-----ceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccc
Q 015301 197 GHLIFSGSDDSLCKVWDRRCFISKGR--ANGVLMGHLE-----GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTD 269 (409)
Q Consensus 197 ~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 269 (409)
..+|++|+.+|.|..||.|....-+. ....+..|.+ .|+++.|+.+|-.+++|..+|.+.|||++...+
T Consensus 187 hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p---- 262 (703)
T KOG2321|consen 187 HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP---- 262 (703)
T ss_pred cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc----
Confidence 88999999999999999873211111 1111223333 499999999999999999999999999998332
Q ss_pred cccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEE
Q 015301 270 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA 349 (409)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~ 349 (409)
...+.|.....+....|... .+++.|++. ....++|||-.+|+...
T Consensus 263 -------------------------------l~~kdh~~e~pi~~l~~~~~--~~q~~v~S~-Dk~~~kiWd~~~Gk~~a 308 (703)
T KOG2321|consen 263 -------------------------------LLVKDHGYELPIKKLDWQDT--DQQNKVVSM-DKRILKIWDECTGKPMA 308 (703)
T ss_pred -------------------------------eeecccCCccceeeeccccc--CCCceEEec-chHHhhhcccccCCcee
Confidence 12223332223333333222 123444443 45679999999999998
Q ss_pred EeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcccC
Q 015301 350 KLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAP 391 (409)
Q Consensus 350 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 391 (409)
.+.. ...++.+|+-|++-+++++-.++.+..|=++...+.|
T Consensus 309 siEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaP 349 (703)
T KOG2321|consen 309 SIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAP 349 (703)
T ss_pred eccc-cCCcCceeeecCCceEEEecCCCcceeEEccccCCCc
Confidence 8874 4569999999999999999999999888887766543
No 209
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.82 E-value=3e-18 Score=132.91 Aligned_cols=307 Identities=17% Similarity=0.278 Sum_probs=198.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee----eeeeeecc----------cccceEEEEEeCCCC--cEEEEE
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK----IQKDIETK----------ALRWTITDTSLSPDQ--RFLVYA 103 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~----~~~~~~~~----------~~~~~v~~~~~s~~~--~~l~~~ 103 (409)
..-|.++.|...|.+||||..+|.|.++.-+.... .......+ .....|..+.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 46689999999999999999999999997554321 11111110 113468999998865 456677
Q ss_pred ecCCEEEEEEcCCCcccc------------------ccceeceeeeee---eecCCCCcceeeEEEEEcCCCCeEEEEEe
Q 015301 104 SICAIVNIVDVGSSARES------------------LANVTEIHKGLD---FSADGDEDEFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 104 ~~dg~i~~w~~~~~~~~~------------------~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (409)
+.|.+|++|.+....... ..........+. -......|..-|+++.++.|+..++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 889999999987654332 000000000011 1112347888999999999999888874
Q ss_pred cCeEEEEECCCCeeeeE---EcCC-----CCCeEEEEEeCCCCcEEEEeeCCCeEEEeccccccc------------CCc
Q 015301 163 DNFIYVYDLQANKCSLR---IPAH-----KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFIS------------KGR 222 (409)
Q Consensus 163 d~~i~v~d~~~~~~~~~---~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------~~~ 222 (409)
|=.|.+|+++-...... ++.+ +.-|++..|+|...++++-.+..|+|++.|+|...- .+.
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 77899999864332222 2222 345889999988889999999999999999983110 011
Q ss_pred eeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceee
Q 015301 223 ANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLAT 302 (409)
Q Consensus 223 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (409)
....+.+--..|..+.|+++|+++++-.. -+|++||+... .+++.+
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme---------------------------------~~pv~t 309 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNME---------------------------------AKPVET 309 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecccc---------------------------------CCcceE
Confidence 11112223346788999999999997654 47999999653 233444
Q ss_pred eecccceee---------eeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceE-EEe-------------------c-
Q 015301 303 YKGHSVLRT---------LIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV-AKL-------------------D- 352 (409)
Q Consensus 303 ~~~~~~~~~---------~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~-~~~-------------------~- 352 (409)
+.-|..... .+-..|..+|+.++.++++|+....+++|++..|... .++ .
T Consensus 310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~ 389 (433)
T KOG1354|consen 310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSS 389 (433)
T ss_pred EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecC
Confidence 444332211 1112345578888999999999999999996544210 000 0
Q ss_pred c-------------CCcceeeeEEecCcCeEEeecCCCeEEEE
Q 015301 353 F-------------HNAPVRDCCWHPIYPMLISSSWDCNIVRW 382 (409)
Q Consensus 353 ~-------------~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 382 (409)
+ ....+...+|+|..+.+|.+..+ .++++
T Consensus 390 g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatn-nlyif 431 (433)
T KOG1354|consen 390 GKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATN-NLYIF 431 (433)
T ss_pred CCccccccccchhhhhhHHHhhccCCccceeeeeecC-ceEEe
Confidence 0 12245567899988888877654 55554
No 210
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.81 E-value=1.6e-19 Score=145.14 Aligned_cols=270 Identities=17% Similarity=0.248 Sum_probs=203.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcc
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~ 119 (409)
.-.-+.+.|+.+|+.|+.|+..|.+-.+|..++.... .+.... .|.++.|..+.+++|++- ...++|||-..-+.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~-Ei~v~E---tv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtEl 203 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF-EINVME---TVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTEL 203 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeee-eeehhh---hhhhhhhhcchHHHHhhh-hceEEEecCCCcEE
Confidence 3445788999999999999999999999999884433 333333 699999999988888775 57899999877665
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcE
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHL 199 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 199 (409)
..+.... +|..+.|.|..-+|++++..|.+.--|+.+|+.+..+....+.+..|+-+ |-+..
T Consensus 204 HClk~~~-----------------~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN-P~NaV 265 (545)
T KOG1272|consen 204 HCLKRHI-----------------RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN-PYNAV 265 (545)
T ss_pred eehhhcC-----------------chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC-Cccce
Confidence 4444322 58899999999999999999999999999999999998888899999999 67778
Q ss_pred EEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccc
Q 015301 200 IFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWD 279 (409)
Q Consensus 200 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 279 (409)
+-+|...|+|.+|... ...++..+..|.++|.++++.++|+++++.+.|..++|||+++....
T Consensus 266 ih~GhsnGtVSlWSP~----skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql------------- 328 (545)
T KOG1272|consen 266 IHLGHSNGTVSLWSPN----SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL------------- 328 (545)
T ss_pred EEEcCCCceEEecCCC----CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccc-------------
Confidence 9999999999999954 77788888899999999999999999999999999999999984321
Q ss_pred cccccccccceeccccCccceeeeec-ccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc-CCc--eEEEecc--
Q 015301 280 YRWMEYPSYARRLKHPHDQSLATYKG-HSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV-SGA--QVAKLDF-- 353 (409)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~-~~~--~~~~~~~-- 353 (409)
.++.. +. ...+++|. ..+||.+ ....|.||.-. .+. .-..+-.
T Consensus 329 ---------------------~t~~tp~~--------a~~ls~Sq-kglLA~~-~G~~v~iw~d~~~~s~~~~~pYm~H~ 377 (545)
T KOG1272|consen 329 ---------------------HTYRTPHP--------ASNLSLSQ-KGLLALS-YGDHVQIWKDALKGSGHGETPYMNHR 377 (545)
T ss_pred ---------------------ceeecCCC--------cccccccc-ccceeee-cCCeeeeehhhhcCCCCCCcchhhhc
Confidence 22111 11 11223443 2344444 44568999532 211 1111111
Q ss_pred CCcceeeeEEecCcCeEEeecCCCeEE
Q 015301 354 HNAPVRDCCWHPIYPMLISSSWDCNIV 380 (409)
Q Consensus 354 ~~~~v~~~~~s~~~~~l~s~~~dg~i~ 380 (409)
..++|.++.|.|-...|-.|..-|.-.
T Consensus 378 ~~~~V~~l~FcP~EDvLGIGH~~G~ts 404 (545)
T KOG1272|consen 378 CGGPVEDLRFCPYEDVLGIGHAGGITS 404 (545)
T ss_pred cCcccccceeccHHHeeeccccCCcee
Confidence 245899999999877776665555433
No 211
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.7e-16 Score=123.00 Aligned_cols=239 Identities=18% Similarity=0.155 Sum_probs=152.1
Q ss_pred eeeEEecCce-eEeeccceEEEEeee-cCCCceeec-CCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeee-----
Q 015301 5 REVNYSGRGR-FSAADSCHVLSRYLP-VNGPWKVDG-MNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWKI----- 75 (409)
Q Consensus 5 ~~~~~s~dg~-~~~~~~~~~~~~~~~-~~~~~~l~~-h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~~~~----- 75 (409)
|-++|.+--. |..+...+.+..+-. ...+..|+. -...|+|++|-|.+ +-|+.|+..| |.+|..+.....
T Consensus 102 r~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~ 180 (445)
T KOG2139|consen 102 RGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIR 180 (445)
T ss_pred eeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccc
Confidence 5567776322 222233333333322 234445543 34689999999964 5688888766 999997643221
Q ss_pred ------eeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEE
Q 015301 76 ------QKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSV 148 (409)
Q Consensus 76 ------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (409)
.+.....+| .+|++|.|.+||..|++++ .+..|.|||.+++......... .+.+.-+
T Consensus 181 ~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g---------------lgg~slL 244 (445)
T KOG2139|consen 181 MMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG---------------LGGFSLL 244 (445)
T ss_pred cccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC---------------CCceeeE
Confidence 123344455 4899999999999999987 4678999999998876555211 1258889
Q ss_pred EEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCce-----
Q 015301 149 KFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRA----- 223 (409)
Q Consensus 149 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----- 223 (409)
.||||+.+|++++-|+..++|+..............+.|...+|+ |.|.+|+.... |.-++|.+....+....
T Consensus 245 kwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWs-pcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~ 322 (445)
T KOG2139|consen 245 KWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWS-PCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQS 322 (445)
T ss_pred EEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeec-CCCCEEEEEEc-CCceEEEEeecCCCccccCccc
Confidence 999999999999999999999655443333333345699999999 66665544332 33344443210100000
Q ss_pred ------eeee---------eccccceeEEEEcCCCCeEEEEeCCC--------cEEEeeCCC
Q 015301 224 ------NGVL---------MGHLEGITFIDSRRDGRYFISNGKDQ--------TTKLWDIRK 262 (409)
Q Consensus 224 ------~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~dg--------~i~iwd~~~ 262 (409)
+..+ .--.+.+.+++|.|.|.+|++.-..+ .|.+||.+.
T Consensus 323 ~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 323 IKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred ceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence 0000 01246788999999999999876544 366677665
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.1e-16 Score=125.20 Aligned_cols=317 Identities=12% Similarity=0.113 Sum_probs=190.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCC-cEEEEEecCCEEEEEEcCCCc
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ-RFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~~w~~~~~~ 118 (409)
+..+..++|++.-..+|++..|-.|++|+-... .... +... ....|++++|-|.+ +.|++|+ .+-|.+|......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~-Lks~-sQrnvtclawRPlsaselavgC-r~gIciW~~s~tl 173 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTK-LKSV-SQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTL 173 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCC-CCce-ecch-hhcceeEEEeccCCcceeeeee-cceeEEEEcCccc
Confidence 345778999997777899999999999997763 2222 2222 23379999999964 5566666 4568899876432
Q ss_pred cccc-cceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCC
Q 015301 119 RESL-ANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADET 196 (409)
Q Consensus 119 ~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 196 (409)
.... ......+....+. ..+| .+|+++.|.+||..+++++. |..|.|||..++..+.......+.++-+.|+ |+
T Consensus 174 n~~r~~~~~s~~~~qvl~--~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS-Pd 249 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQ--DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS-PD 249 (445)
T ss_pred ccccccccccccchhhee--CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEc-CC
Confidence 2111 1111111111111 1233 57999999999999998876 6789999999988766554566788999999 89
Q ss_pred CcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccc
Q 015301 197 GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDY 276 (409)
Q Consensus 197 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 276 (409)
+.+|++++-|+..++|... ....... .....+.|...+|+|+|++|+..+. |.-++|.+.-......... ..
T Consensus 250 gd~lfaAt~davfrlw~e~---q~wt~er-w~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~-~~-- 321 (445)
T KOG2139|consen 250 GDVLFAATCDAVFRLWQEN---QSWTKER-WILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLR-PQ-- 321 (445)
T ss_pred CCEEEEecccceeeeehhc---ccceecc-eeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccC-cc--
Confidence 9999999999999999642 1222222 2233458999999999998766553 3455666543222111110 00
Q ss_pred ccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC--------eEEEEEccCCceE
Q 015301 277 DWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN--------SVYIYDLVSGAQV 348 (409)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg--------~v~i~d~~~~~~~ 348 (409)
.....+...+-..+....+ ...+.....+++++|.|.+||+.-..+ .|.+||.+..-.+
T Consensus 322 ----------~~k~~lliaDL~e~ti~ag---~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v 388 (445)
T KOG2139|consen 322 ----------SIKRVLLIADLQEVTICAG---QRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV 388 (445)
T ss_pred ----------cceeeeeeccchhhhhhcC---cccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce
Confidence 0000000000011111111 112223445678999999999976543 3667776554333
Q ss_pred EEec-c--CCcceeeeEEec---CcCeEEeecCCCeEEEEecC
Q 015301 349 AKLD-F--HNAPVRDCCWHP---IYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 349 ~~~~-~--~~~~v~~~~~s~---~~~~l~s~~~dg~i~iw~~~ 385 (409)
.-.. + ....-..++|+| ++++|..+=..|.+.-|++.
T Consensus 389 els~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 389 ELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 2221 1 111244566665 34456555556777777663
No 213
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=2.3e-17 Score=145.97 Aligned_cols=291 Identities=14% Similarity=0.095 Sum_probs=187.4
Q ss_pred ceeeEEecCceeEeeccc---eEEEEeeecCCCceeecC---CCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCCe-e
Q 015301 4 GREVNYSGRGRFSAADSC---HVLSRYLPVNGPWKVDGM---NSRVYTSQFSN--DGSFFVAASQESNIKVYNVDKNW-K 74 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~---~~~~~~~~~~~~~~l~~h---~~~v~~~~~s~--~~~~l~t~~~d~~i~vw~~~~~~-~ 74 (409)
.+.+.|+|=...+++... ..+|++-.....-.+..+ ...|+.+.+-. |..++++|+.||.|+||+--... .
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~ 1146 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK 1146 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccC
Confidence 566777776655555442 234444333322222222 35688888854 45689999999999999843221 1
Q ss_pred eeee----eecc----cccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeE
Q 015301 75 IQKD----IETK----ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIF 146 (409)
Q Consensus 75 ~~~~----~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 146 (409)
..+. .... +..+.-.-+.|.....+|++++.-..|+|||............. ....|+
T Consensus 1147 ~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~--------------s~t~vT 1212 (1387)
T KOG1517|consen 1147 KPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG--------------SSTLVT 1212 (1387)
T ss_pred CceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccC--------------CCccce
Confidence 1111 1111 11111234577777777777777899999999876643322211 122366
Q ss_pred EEEEcC-CCCeEEEEEecCeEEEEECCCCe---eeeEEcCCCCC--eEEEEEeCCCCcEEEEeeCCCeEEEecccccccC
Q 015301 147 SVKFST-DGQELVAAGSDNFIYVYDLQANK---CSLRIPAHKSD--VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK 220 (409)
Q Consensus 147 ~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 220 (409)
++.-+. .|+.+++|..||.|++||.+... .+...+.|+.. |..+.+.+..-..|++|+.||.|++||+|.. .
T Consensus 1213 aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~--~ 1290 (1387)
T KOG1517|consen 1213 ALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS--S 1290 (1387)
T ss_pred eecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC--c
Confidence 665443 57899999999999999987543 45566788887 9999998423335999999999999999942 2
Q ss_pred Cceeeeeeccc--c-ceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCc
Q 015301 221 GRANGVLMGHL--E-GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 297 (409)
Q Consensus 221 ~~~~~~~~~~~--~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (409)
......+..|- + ..+++..++....+++|+. +.|+||++.....
T Consensus 1291 ~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-------------------------------- 1337 (1387)
T KOG1517|consen 1291 KETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-------------------------------- 1337 (1387)
T ss_pred ccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh--------------------------------
Confidence 22223333333 3 5899999999999999988 8999999876322
Q ss_pred cceeeeecccc-eeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 298 QSLATYKGHSV-LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 298 ~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
..++.+.. .........+++|+|..-++|+|+.|..|.||.....+
T Consensus 1338 ---~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1338 ---NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ---cccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 11111110 01111223567899989999999999999999876543
No 214
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=1.2e-16 Score=138.55 Aligned_cols=236 Identities=17% Similarity=0.182 Sum_probs=156.6
Q ss_pred CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec---CCEEEEEEcCCCccccccceeceeeeeeeecCC
Q 015301 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI---CAIVNIVDVGSSARESLANVTEIHKGLDFSADG 138 (409)
Q Consensus 62 ~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (409)
..|.+||.+.... ..... +...+...+|+|||+.|+..+. +..|.+|++.+++.........
T Consensus 179 ~~l~~~d~dg~~~-~~lt~---~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~----------- 243 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHR---SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR----------- 243 (429)
T ss_pred eeEEEEcCCCCCC-EEeec---CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC-----------
Confidence 3688998876532 22222 2347899999999999987642 4579999998775433322111
Q ss_pred CCcceeeEEEEEcCCCCeEEEEE-ecC--eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeC-CCeEEEecc
Q 015301 139 DEDEFGIFSVKFSTDGQELVAAG-SDN--FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD-DSLCKVWDR 214 (409)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~l~~~~-~d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~ 214 (409)
.+...+|+|||+.|+... .+| .|++||+++++... +..+...+....|+ |+++.|+..+. ++...+|.+
T Consensus 244 -----~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wS-PDG~~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 244 -----HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWF-PDSQNLAYTSDQAGRPQVYKV 316 (429)
T ss_pred -----CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEEC-CCCCEEEEEeCCCCCceEEEE
Confidence 244689999999888653 344 59999998887554 44445567889999 78887766654 455556643
Q ss_pred cccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC---CcEEEeeCCCCccccccccccccccccccccccccccee
Q 015301 215 RCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD---QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARR 291 (409)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (409)
. ...+. ...+..+........|+|||++|+..+.+ ..|.+||+.+..
T Consensus 317 d--~~~g~-~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~--------------------------- 366 (429)
T PRK03629 317 N--INGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--------------------------- 366 (429)
T ss_pred E--CCCCC-eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC---------------------------
Confidence 2 11222 23333344455678899999998876653 357888886632
Q ss_pred ccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCe---EEEEEccCCceEEEeccCCcceeeeEEec
Q 015301 292 LKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNS---VYIYDLVSGAQVAKLDFHNAPVRDCCWHP 365 (409)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~---v~i~d~~~~~~~~~~~~~~~~v~~~~~s~ 365 (409)
...+.... ...++.|+|||++|+.++.++. ++++++ +++....+.+|.+.+...+|+|
T Consensus 367 --------~~~Lt~~~-------~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 367 --------VQVLTDTF-------LDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred --------eEEeCCCC-------CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 11111100 1125679999999999988764 677777 5666777888888999999997
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=9.9e-16 Score=117.84 Aligned_cols=278 Identities=16% Similarity=0.203 Sum_probs=177.9
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccc--eEEEEEeCCCCcEEEE-EecC------CEEEEEE
Q 015301 43 VYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRW--TITDTSLSPDQRFLVY-ASIC------AIVNIVD 113 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~-~~~d------g~i~~w~ 113 (409)
...++|+.|...+++|.++| .+||+.+--.+.. ....+.+ .+..|-| ..++|+. |+.+ ..+.|||
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEe
Confidence 44599999999999998887 9999987521111 1111111 2222333 2345553 3322 4799999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECC-CCeeeeEEcCC--CCCeEEE
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ-ANKCSLRIPAH--KSDVNTV 190 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~~~~~~~~--~~~v~~~ 190 (409)
-........... ..+|.++.+.++ .|++.- .+.|+||... +.+.+..+..- .....++
T Consensus 82 D~k~~~i~el~f----------------~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~ 142 (346)
T KOG2111|consen 82 DLKERCIIELSF----------------NSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSL 142 (346)
T ss_pred cccCcEEEEEEe----------------ccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEee
Confidence 433333222221 226899999765 455553 6789999997 55556555432 2333333
Q ss_pred EEeCCCCcEEEE-eeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCc-EEEeeCCCCccccc
Q 015301 191 CFADETGHLIFS-GSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT-TKLWDIRKMSSNTT 268 (409)
Q Consensus 191 ~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~ 268 (409)
+-. .+..+|+. |-.-|.|+|-|+.. ........+.+|...|.+++.+.+|..+|+++..|+ |+|||..+
T Consensus 143 ~~~-~~k~~LafPg~k~GqvQi~dL~~--~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~------ 213 (346)
T KOG2111|consen 143 CPT-SNKSLLAFPGFKTGQVQIVDLAS--TKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED------ 213 (346)
T ss_pred cCC-CCceEEEcCCCccceEEEEEhhh--cCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC------
Confidence 332 33344444 44679999999862 122245778899999999999999999999999886 89999988
Q ss_pred ccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc--
Q 015301 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA-- 346 (409)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~-- 346 (409)
+..+..++... ....+++++|||+..+||+++..|+++||.++...
T Consensus 214 ----------------------------g~~l~E~RRG~----d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~ 261 (346)
T KOG2111|consen 214 ----------------------------GTLLQELRRGV----DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENT 261 (346)
T ss_pred ----------------------------CcEeeeeecCC----chheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCC
Confidence 34444443322 12456788999999999999999999999986532
Q ss_pred -e---------------------EEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 347 -Q---------------------VAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 347 -~---------------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
. +..++-..++..-++|-.+.+.++..+.||.-+-+.+..
T Consensus 262 ~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~ 323 (346)
T KOG2111|consen 262 EDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFDP 323 (346)
T ss_pred ccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEecc
Confidence 1 111122344555567766656666667788776665543
No 216
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=5e-18 Score=139.71 Aligned_cols=244 Identities=16% Similarity=0.198 Sum_probs=165.4
Q ss_pred eeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC--CCC
Q 015301 78 DIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--DGQ 155 (409)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~ 155 (409)
..++.+|.+.|+++.|+.+|.+|++|+.|-.+.|||.-..+..... . .+|...|.++.|-| +.+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~------------TgHtaNIFsvKFvP~tnnr 108 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--S------------TGHTANIFSVKFVPYTNNR 108 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--e------------cccccceeEEeeeccCCCe
Confidence 3456789999999999999999999999999999999754432221 1 26677899999999 567
Q ss_pred eEEEEEecCeEEEEECCCC----------eeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCc---
Q 015301 156 ELVAAGSDNFIYVYDLQAN----------KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR--- 222 (409)
Q Consensus 156 ~l~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--- 222 (409)
.+++|..|..|+++|+... +....+..|...|..++-.|...+.+.++++||+++-+|+|....-..
T Consensus 109 iv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~ 188 (758)
T KOG1310|consen 109 IVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDED 188 (758)
T ss_pred EEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccc
Confidence 8899999999999999742 234445789999999999966669999999999999999984211110
Q ss_pred ee---eeeeccccceeEEEEcCC-CCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcc
Q 015301 223 AN---GVLMGHLEGITFIDSRRD-GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQ 298 (409)
Q Consensus 223 ~~---~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (409)
+. ..+....-...++..+|. ..+|++|+.|-..++||.+............. ..+. ....
T Consensus 189 ~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~----------~~pp------~~~~ 252 (758)
T KOG1310|consen 189 CPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMN----------TCPP------KDCR 252 (758)
T ss_pred ccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCcccc----------CCCC------cccc
Confidence 11 111112234567888885 56889999999999999654222111100000 0000 0001
Q ss_pred ceeeeec-c-----cceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEe
Q 015301 299 SLATYKG-H-----SVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 351 (409)
Q Consensus 299 ~~~~~~~-~-----~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 351 (409)
++..|.. | ........++.-++|+|+|.-|++.-..-.|+++|+..++....+
T Consensus 253 cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 253 CVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred hhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 1111111 1 011233345667789999988888777778999999888765443
No 217
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.2e-17 Score=127.97 Aligned_cols=172 Identities=12% Similarity=0.165 Sum_probs=128.5
Q ss_pred CCCceeecCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe----
Q 015301 31 NGPWKVDGMNSRVYTSQFSN--DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS---- 104 (409)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~--~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---- 104 (409)
+....+++|...++.+.|.. ....+.+|+.||+|++||+....+............+-.+++..-.++.+++|.
T Consensus 61 ~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~ 140 (376)
T KOG1188|consen 61 QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTR 140 (376)
T ss_pred hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecccccc
Confidence 34568889999999999976 456789999999999999998765554433332224567777776778888875
Q ss_pred cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCCee---eeEE
Q 015301 105 ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKC---SLRI 180 (409)
Q Consensus 105 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~---~~~~ 180 (409)
.+-.|.+||++..+.. ..... +.|...|++++|+| +.+.|++|+.||-|.++|++.... +...
T Consensus 141 s~A~v~lwDvR~~qq~-l~~~~------------eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~v 207 (376)
T KOG1188|consen 141 SDASVVLWDVRSEQQL-LRQLN------------ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHV 207 (376)
T ss_pred CceEEEEEEeccccch-hhhhh------------hhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHh
Confidence 4668999999887653 11122 23455799999999 567899999999999999975422 2222
Q ss_pred cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 181 PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 181 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
-.|...|.++.|..+.-+.|.+-+..++..+|++.
T Consensus 208 iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 208 INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE 242 (376)
T ss_pred hcccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence 34778899999995554678889999999999976
No 218
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=2.2e-17 Score=143.63 Aligned_cols=200 Identities=16% Similarity=0.150 Sum_probs=133.8
Q ss_pred CCCceeecCCCCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe-cC
Q 015301 31 NGPWKVDGMNSRVYTSQFSNDGSFFVAASQE---SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-IC 106 (409)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d 106 (409)
.....+..|...+.+++|||||+.|+.++.+ ..|++||+.++... ......+ ....++|+|||+.|+++. .+
T Consensus 194 ~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-~l~~~~g---~~~~~~wSPDG~~La~~~~~~ 269 (429)
T PRK01742 194 FNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-VVASFRG---HNGAPAFSPDGSRLAFASSKD 269 (429)
T ss_pred CCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-EEecCCC---ccCceeECCCCCEEEEEEecC
Confidence 3456778899999999999999999987654 46999999877432 2222333 244689999999988765 57
Q ss_pred CEEEEE--EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCCC-eeeeEEcC
Q 015301 107 AIVNIV--DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQAN-KCSLRIPA 182 (409)
Q Consensus 107 g~i~~w--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~-~~~~~~~~ 182 (409)
|.+.|| |+.++...... .+...+....|+|||+.|+.++ .++...||++... .....+ .
T Consensus 270 g~~~Iy~~d~~~~~~~~lt----------------~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~ 332 (429)
T PRK01742 270 GVLNIYVMGANGGTPSQLT----------------SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G 332 (429)
T ss_pred CcEEEEEEECCCCCeEeec----------------cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c
Confidence 765555 55554422111 1122467899999999887665 4677777776432 222223 3
Q ss_pred CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 183 HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 183 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
+.. ....|+ |+++.|+..+.++ +.+||+. .+........+ ....+.|+|+|++|+.++.++...+|++.
T Consensus 333 ~~~--~~~~~S-pDG~~ia~~~~~~-i~~~Dl~----~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 333 GRG--YSAQIS-ADGKTLVMINGDN-VVKQDLT----SGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CCC--CCccCC-CCCCEEEEEcCCC-EEEEECC----CCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 433 457898 8888888877765 5558864 33322211111 23567899999999999999988888764
No 219
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=3.5e-15 Score=123.49 Aligned_cols=313 Identities=16% Similarity=0.189 Sum_probs=201.2
Q ss_pred eeeEEecCceeEeeccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEE-----eC-----CCcEEEEEcCCCee
Q 015301 5 REVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAA-----SQ-----ESNIKVYNVDKNWK 74 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~-----~~-----d~~i~vw~~~~~~~ 74 (409)
+..++|++|++.+......++.+-.......+.-....++++.|||.|.+|.|= .. .-.+.+|+++++ .
T Consensus 38 ~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~-~ 116 (566)
T KOG2315|consen 38 NVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETG-V 116 (566)
T ss_pred eeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeeccc-e
Confidence 567899999998887777666665554434454444589999999999998862 11 245789999985 3
Q ss_pred eeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC
Q 015301 75 IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG 154 (409)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 154 (409)
....+......+ .+..|++|..+.+ --..+.+++|+..+.+..... -|...+..+.++|.+
T Consensus 117 ~~s~~q~k~Q~~--W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~k----------------l~~~~i~~f~lSpgp 177 (566)
T KOG2315|consen 117 QRSQIQKKMQNG--WVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQHK----------------LSVSGITMLSLSPGP 177 (566)
T ss_pred ehhheehhhhcC--cccccccchhhhh-hhhcceEEEEecCCccceeee----------------eeccceeeEEecCCC
Confidence 332222222222 4788988875433 233578999999773321111 112258888888863
Q ss_pred C--eEEE-----EEecCeEEEEECCCCeeeeEE---cCCCCCeEEEEEeCCCCcEEEEeeC--C---------CeEEEec
Q 015301 155 Q--ELVA-----AGSDNFIYVYDLQANKCSLRI---PAHKSDVNTVCFADETGHLIFSGSD--D---------SLCKVWD 213 (409)
Q Consensus 155 ~--~l~~-----~~~d~~i~v~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~--d---------g~i~iwd 213 (409)
. .+++ .+.-+.|+||.......-..+ .-....-..+.|++....+|+.++. | .++++.+
T Consensus 178 ~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~ 257 (566)
T KOG2315|consen 178 EPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLA 257 (566)
T ss_pred CCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEE
Confidence 2 3333 244568999987632221111 1122334577888433334443332 2 3567777
Q ss_pred ccccccCCceeeeeeccccceeEEEEcCCCCeEEEE--eCCCcEEEeeCCCCccccccccccccccccccccccccccee
Q 015301 214 RRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISN--GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARR 291 (409)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (409)
+. +.....-....++|.++.|+|+++.++++ -.--.+.|||++-
T Consensus 258 t~-----g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~----------------------------- 303 (566)
T KOG2315|consen 258 TQ-----GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG----------------------------- 303 (566)
T ss_pred ec-----CceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-----------------------------
Confidence 42 33333333357899999999999876654 4567899999875
Q ss_pred ccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC---CeEEEEEccCCceEEEeccCCcceeeeEEecCcC
Q 015301 292 LKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD---NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP 368 (409)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 368 (409)
..+..+.... ...+-|+|.|++|+.++.+ |.|-|||+.+.+++..+..... +-+.|+|||+
T Consensus 304 ------~~v~df~egp--------RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe 367 (566)
T KOG2315|consen 304 ------KPVFDFPEGP--------RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGE 367 (566)
T ss_pred ------CEeEeCCCCC--------ccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCc
Confidence 3333332221 1233588899999988764 8999999999999988876543 4578999999
Q ss_pred eEEeecC------CCeEEEEecCCC
Q 015301 369 MLISSSW------DCNIVRWEIPGI 387 (409)
Q Consensus 369 ~l~s~~~------dg~i~iw~~~~~ 387 (409)
+++|++. |+.++||+....
T Consensus 368 ~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 368 YFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred EEEEEeccccEEecCCeEEEEecCc
Confidence 9998864 788999998764
No 220
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.76 E-value=3.3e-18 Score=137.74 Aligned_cols=231 Identities=17% Similarity=0.178 Sum_probs=188.6
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeE
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 166 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 166 (409)
....+.++.+|+.|+.|+..|.|..+|+.+..........+ .|.++.|..+.++++++ ....+
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E----------------tv~Dv~~LHneq~~AVA-QK~y~ 193 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME----------------TVRDVTFLHNEQFFAVA-QKKYV 193 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhh----------------hhhhhhhhcchHHHHhh-hhceE
Confidence 46788999999999999999999999999988765554443 48889999998888877 46789
Q ss_pred EEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeE
Q 015301 167 YVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYF 246 (409)
Q Consensus 167 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 246 (409)
+|||- .|..+..++.| ..|..+.|. |..-+|++++..|.++.-|+. .++.+..+....+.+..+.-+|-...+
T Consensus 194 yvYD~-~GtElHClk~~-~~v~rLeFL-PyHfLL~~~~~~G~L~Y~DVS----~GklVa~~~t~~G~~~vm~qNP~NaVi 266 (545)
T KOG1272|consen 194 YVYDN-NGTELHCLKRH-IRVARLEFL-PYHFLLVAASEAGFLKYQDVS----TGKLVASIRTGAGRTDVMKQNPYNAVI 266 (545)
T ss_pred EEecC-CCcEEeehhhc-Cchhhhccc-chhheeeecccCCceEEEeec----hhhhhHHHHccCCccchhhcCCccceE
Confidence 99995 56667777755 578999999 888899999999999999964 888888888888999999999999999
Q ss_pred EEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCC
Q 015301 247 ISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK 326 (409)
Q Consensus 247 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 326 (409)
-+|...|+|.+|.-.. ..++..+-.|. ..+.++++.++|+
T Consensus 267 h~GhsnGtVSlWSP~s----------------------------------kePLvKiLcH~------g~V~siAv~~~G~ 306 (545)
T KOG1272|consen 267 HLGHSNGTVSLWSPNS----------------------------------KEPLVKILCHR------GPVSSIAVDRGGR 306 (545)
T ss_pred EEcCCCceEEecCCCC----------------------------------cchHHHHHhcC------CCcceEEECCCCc
Confidence 9999999999999776 23444455555 3445668999999
Q ss_pred EEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 327 YIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 327 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
|+|+.+.|..++|||++....+.++.. .-+...+++|..| |++++....|.+|.=
T Consensus 307 YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 307 YMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKD 361 (545)
T ss_pred EEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeehh
Confidence 999999999999999999887777654 4567788888655 334445568999953
No 221
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=6.5e-16 Score=134.29 Aligned_cols=237 Identities=17% Similarity=0.218 Sum_probs=150.5
Q ss_pred CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC---CEEEEEEcCCCccccccceeceeeeeeeecCC
Q 015301 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---AIVNIVDVGSSARESLANVTEIHKGLDFSADG 138 (409)
Q Consensus 62 ~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (409)
..|.++|.+.. ...... .+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++........
T Consensus 176 ~~L~~~D~dG~-~~~~l~---~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~------------ 239 (427)
T PRK02889 176 YQLQISDADGQ-NAQSAL---SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK------------ 239 (427)
T ss_pred cEEEEECCCCC-CceEec---cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC------------
Confidence 35677776443 222222 234478899999999999887643 46999999887643322111
Q ss_pred CCcceeeEEEEEcCCCCeEEE-EEecCeEEEE--ECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee-CCCeEEEecc
Q 015301 139 DEDEFGIFSVKFSTDGQELVA-AGSDNFIYVY--DLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDSLCKVWDR 214 (409)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~v~--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~ 214 (409)
......+|+|||+.|+. .+.++...+| |+.++. ...+..+........|+ ++++.|+..+ .+|...+|.+
T Consensus 240 ----g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS-pDG~~l~f~s~~~g~~~Iy~~ 313 (427)
T PRK02889 240 ----GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFS-PDGRSIYFTSDRGGAPQIYRM 313 (427)
T ss_pred ----CCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEc-CCCCEEEEEecCCCCcEEEEE
Confidence 13567899999998875 4556665554 555544 44455555566778999 7888776555 4567777765
Q ss_pred cccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC---cEEEeeCCCCccccccccccccccccccccccccccee
Q 015301 215 RCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ---TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARR 291 (409)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (409)
.. ..+. ...+..+........|+|+|++|+..+.++ .|.+||+.+...
T Consensus 314 ~~--~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~-------------------------- 364 (427)
T PRK02889 314 PA--SGGA-AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV-------------------------- 364 (427)
T ss_pred EC--CCCc-eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe--------------------------
Confidence 41 1222 222222223344678999999998777654 699999876321
Q ss_pred ccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC---eEEEEEccCCceEEEeccCCcceeeeEEecC
Q 015301 292 LKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN---SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPI 366 (409)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~ 366 (409)
..+.... ....+.|+|||+.|+.++.++ .+++.++ +++....+..+.+.+...+|+|-
T Consensus 365 ---------~~lt~~~-------~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 365 ---------TALTDTT-------RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ---------EEccCCC-------CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 1111110 013568999999998887653 4666666 56666667667788888999874
No 222
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.75 E-value=8.3e-16 Score=138.32 Aligned_cols=264 Identities=14% Similarity=0.149 Sum_probs=165.2
Q ss_pred ecccccceEEEEEeCCCC-cEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE
Q 015301 80 ETKALRWTITDTSLSPDQ-RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 158 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (409)
....|...+..++.+++. .++++|+.||+|++|+...-...... ......+.. ...++.++...+.+..+|
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s----~rS~ltys~----~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGS----ARSELTYSP----EGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcce----eeeeEEEec----cCCceEEEEeccCCCeEE
Confidence 345566678888887754 99999999999999998764432100 011111211 233688999999999999
Q ss_pred EEEecCeEEEEECCCCe--e-----eeEEcC-CCCCeEE-EEEeCCCCc-EEEEeeCCCeEEEecccccccCCceeeeee
Q 015301 159 AAGSDNFIYVYDLQANK--C-----SLRIPA-HKSDVNT-VCFADETGH-LIFSGSDDSLCKVWDRRCFISKGRANGVLM 228 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~--~-----~~~~~~-~~~~v~~-~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 228 (409)
+++.||.|.+.++...+ . ...... ..+.+.+ -+|...... .++.+..-+.|..||+|.. .........
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~--~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR--HDAWRLKNQ 1192 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh--hhHHhhhcC
Confidence 99999999999987521 1 111111 1233333 344433444 7888888999999998732 222222233
Q ss_pred ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccc
Q 015301 229 GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV 308 (409)
Q Consensus 229 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (409)
...+.|++++.+|.+.+++.|...|.+.+||+|-.. ++..+.....
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~----------------------------------~i~sw~~P~~ 1238 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV----------------------------------PILSWEHPAR 1238 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCc----------------------------------eeecccCccc
Confidence 345789999999999999999999999999998622 2222211110
Q ss_pred eeeeeEEEEeeeecCCCCEEEE-Ee-CCCeEEEEEccCCceEEEeccC-------------------CcceeeeEEecCc
Q 015301 309 LRTLIRCYFSPEYSTAQKYIYT-GS-SDNSVYIYDLVSGAQVAKLDFH-------------------NAPVRDCCWHPIY 367 (409)
Q Consensus 309 ~~~~~~~~~~~~~s~~~~~l~~-~~-~dg~v~i~d~~~~~~~~~~~~~-------------------~~~v~~~~~s~~~ 367 (409)
..+.....++ +.|.....++ ++ ..+.|.+|++.+|.+-..+... .-......+..-+
T Consensus 1239 -~~i~~v~~~~-~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~ 1316 (1431)
T KOG1240|consen 1239 -APIRHVWLCP-TYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN 1316 (1431)
T ss_pred -CCcceEEeec-cCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC
Confidence 1111111111 2222334444 44 5788999999988665555321 1112223343345
Q ss_pred CeEEeecCCCeEEEEecCCCcc
Q 015301 368 PMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 368 ~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
..+.+|+.|..|+.||......
T Consensus 1317 ~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1317 GFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred ceeeecCCccceeeccCCCccc
Confidence 5899999999999999876543
No 223
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=1.3e-15 Score=117.78 Aligned_cols=304 Identities=12% Similarity=0.126 Sum_probs=171.1
Q ss_pred ceeeEEecCceeEeeccce----EEEEeeecCCCceeecCCCCeEEEEECCCCCE-EEEEeCCCcEEEEEcCCCeeeeee
Q 015301 4 GREVNYSGRGRFSAADSCH----VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSF-FVAASQESNIKVYNVDKNWKIQKD 78 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~----~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~-l~t~~~d~~i~vw~~~~~~~~~~~ 78 (409)
+.-+.|+.|..+....... .++.+....--..++.-..++..+.|||||+. |.+..-|-.|.||.+.+......
T Consensus 51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~- 129 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL- 129 (447)
T ss_pred hhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-
Confidence 4557788888876654432 33333322222366777788999999999965 55666788999999988644332
Q ss_pred eecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCC---ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC
Q 015301 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS---ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ 155 (409)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (409)
....+ .+..++|+|||++.+.++........++..- ........ .+...+.+.|+|||.
T Consensus 130 -~~pK~--~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~---------------dT~DltgieWsPdg~ 191 (447)
T KOG4497|consen 130 -PHPKT--NVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKL---------------DTIDLTGIEWSPDGN 191 (447)
T ss_pred -ccccc--CceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCC---------------CcccccCceECCCCc
Confidence 22222 5788999999999988764321111111100 00000000 011244556666655
Q ss_pred eEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccc-------------------
Q 015301 156 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRC------------------- 216 (409)
Q Consensus 156 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------------------- 216 (409)
.|++- |-.-.-.+..+. -.-.+..++|+ |.+++|++|+.|+.+++.+--+
T Consensus 192 ~laVw---------d~~Leykv~aYe-~~lG~k~v~ws-P~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~ 260 (447)
T KOG4497|consen 192 WLAVW---------DNVLEYKVYAYE-RGLGLKFVEWS-PCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLH 260 (447)
T ss_pred EEEEe---------cchhhheeeeee-eccceeEEEec-cccceEEeeccchhhhhhceeeeeehhhhccchhccCchhh
Confidence 44432 211000011111 11234555565 5555666666665555543100
Q ss_pred -------------------------------------cc------cCCceeeeeeccccceeEEEEcCCCCeEEEEeC--
Q 015301 217 -------------------------------------FI------SKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-- 251 (409)
Q Consensus 217 -------------------------------------~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-- 251 (409)
.. ...++........-.+.-++|++|..++++-..
T Consensus 261 ~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~ 340 (447)
T KOG4497|consen 261 LLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKY 340 (447)
T ss_pred hhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCC
Confidence 00 000111111122345677999999998888654
Q ss_pred CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEE
Q 015301 252 DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG 331 (409)
Q Consensus 252 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 331 (409)
-+.+-+||+++.+.-.. +... ..+....|+|....|+.+
T Consensus 341 PnalW~Wdlq~l~l~av----------------------------------LiQk-------~piraf~WdP~~prL~vc 379 (447)
T KOG4497|consen 341 PNALWLWDLQNLKLHAV----------------------------------LIQK-------HPIRAFEWDPGRPRLVVC 379 (447)
T ss_pred CceEEEEechhhhhhhh----------------------------------hhhc-------cceeEEEeCCCCceEEEE
Confidence 46799999987332111 1100 111223577778888888
Q ss_pred eCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeE
Q 015301 332 SSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNI 379 (409)
Q Consensus 332 ~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 379 (409)
....++++|.......+. .....-.|..++|.-+|..++-.+.|...
T Consensus 380 tg~srLY~W~psg~~~V~-vP~~GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 380 TGKSRLYFWAPSGPRVVG-VPKKGFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred cCCceEEEEcCCCceEEe-cCCCCceeeeEEecCCCcEEEEEcCCceE
Confidence 888889999875433333 33344579999999999999999998643
No 224
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.74 E-value=1.6e-16 Score=123.35 Aligned_cols=323 Identities=16% Similarity=0.202 Sum_probs=197.0
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
..++||.+.|++...-|...-+++.+.|.+++||--.+..+..... ......+++++.+.++...|+++-..|++.-+.
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI-~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI-YHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFA 96 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh-hhhCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence 4678999999999998988889999999999999755442332222 122334799999999999999999999998887
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCe----------------------------
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF---------------------------- 165 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~---------------------------- 165 (409)
+...-.. +.+......|...+..+-|+....++++.+.|..
T Consensus 97 ~sedfnk-----------m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~ 165 (404)
T KOG1409|consen 97 LSEDFNK-----------MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDA 165 (404)
T ss_pred hhhhhhh-----------cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceee
Confidence 6532111 0111111233334555555444444444443332
Q ss_pred -----------EEEEEC--CCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccc
Q 015301 166 -----------IYVYDL--QANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE 232 (409)
Q Consensus 166 -----------i~v~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 232 (409)
|.+..+ ..-.++.++.+|.+.+.+++|. +...+|++|..|..+.+||+- ........+.+|..
T Consensus 166 ~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd-~~~~~LfSg~~d~~vi~wdig---g~~g~~~el~gh~~ 241 (404)
T KOG1409|consen 166 LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD-PGQRLLFSGASDHSVIMWDIG---GRKGTAYELQGHND 241 (404)
T ss_pred EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc-CCCcEEEeccccCceEEEecc---CCcceeeeeccchh
Confidence 222221 1223455677999999999999 888999999999999999984 44556677889999
Q ss_pred ceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccc-------cccccccccccccccccceeccccCccceeeeec
Q 015301 233 GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNS-------RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG 305 (409)
Q Consensus 233 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (409)
.|..+...+--+.+++++.||.|.+||++........-. ......|+...+-.........+.-.+.-..+.+
T Consensus 242 kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~ 321 (404)
T KOG1409|consen 242 KVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCG 321 (404)
T ss_pred hhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCc
Confidence 999999888888999999999999999987443222110 0011111111111100000000000000000000
Q ss_pred ccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEE--------EEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCC
Q 015301 306 HSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYI--------YDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC 377 (409)
Q Consensus 306 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i--------~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 377 (409)
. -+.+.....+-+..-.+++ +|.. ..++.....-...|+.+.+..+-.+|+|+|.|.
T Consensus 322 ~--------------c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~-~t~LA~phei~tgItamhlqetlglLvTsG~~R 386 (404)
T KOG1409|consen 322 K--------------CSSNRSSYPTMGFEFSVRVCDSCYPTIKDEE-RTPLAIPHEIKTGITAMHLQETLGLLVTSGTDR 386 (404)
T ss_pred c--------------cccCccccccccceeEEEEecccchhhhcCC-CCccccccccccceeEEEhhhhccceeecCCce
Confidence 0 0001111111112223333 3332 233444443345799999988888999999999
Q ss_pred eEEEEecCCC
Q 015301 378 NIVRWEIPGI 387 (409)
Q Consensus 378 ~i~iw~~~~~ 387 (409)
.|+|||+..-
T Consensus 387 vi~iwd~~~v 396 (404)
T KOG1409|consen 387 VIKIWDVRSV 396 (404)
T ss_pred EEEEEechhh
Confidence 9999999753
No 225
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=3.7e-15 Score=130.28 Aligned_cols=234 Identities=15% Similarity=0.166 Sum_probs=151.3
Q ss_pred CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec---CCEEEEEEcCCCccccccceeceeeeeeeecCC
Q 015301 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI---CAIVNIVDVGSSARESLANVTEIHKGLDFSADG 138 (409)
Q Consensus 62 ~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (409)
..|.+||.+.. ...... .+...+.+.+|+|||+.|+..+. +..|.+||+.+++.......
T Consensus 182 ~~l~~~d~dg~-~~~~lt---~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~------------- 244 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYLT---DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF------------- 244 (435)
T ss_pred eEEEEECCCCC-CcEEEe---cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC-------------
Confidence 36888887654 323222 34447999999999999988763 46899999988764322111
Q ss_pred CCcceeeEEEEEcCCCCeEEEE-EecC--eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee-CCC--eEEEe
Q 015301 139 DEDEFGIFSVKFSTDGQELVAA-GSDN--FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDS--LCKVW 212 (409)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~iw 212 (409)
...+...+|+|||+.|+.. +.++ .|++||+.+++. ..+..+........|+ |+++.|+..+ .+| .|.++
T Consensus 245 ---~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s-pDG~~i~f~s~~~g~~~Iy~~ 319 (435)
T PRK05137 245 ---PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS-PDGSQIVFESDRSGSPQLYVM 319 (435)
T ss_pred ---CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc-CCCCEEEEEECCCCCCeEEEE
Confidence 1146678999999987654 4444 588889987765 4455566667789999 7888777665 344 57777
Q ss_pred cccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC---CcEEEeeCCCCcccccccccccccccccccccccccc
Q 015301 213 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD---QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYA 289 (409)
Q Consensus 213 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (409)
|+. . .....+..+...+....|+|+|+.|+....+ ..|.+||+....
T Consensus 320 d~~----g-~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~------------------------- 369 (435)
T PRK05137 320 NAD----G-SNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG------------------------- 369 (435)
T ss_pred ECC----C-CCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-------------------------
Confidence 753 2 2233333344556778899999999877653 357777764411
Q ss_pred eeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC------CeEEEEEccCCceEEEeccCCcceeeeEE
Q 015301 290 RRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD------NSVYIYDLVSGAQVAKLDFHNAPVRDCCW 363 (409)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~~v~~~~~ 363 (409)
...+... .....+.|+|||+.|+..+.+ ..++++|+..++. ..+. ..+.+...+|
T Consensus 370 ----------~~~lt~~-------~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~W 430 (435)
T PRK05137 370 ----------ERILTSG-------FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAW 430 (435)
T ss_pred ----------eEeccCC-------CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCccc
Confidence 1111110 012356899999998876543 3688888866554 4454 3445777888
Q ss_pred ecC
Q 015301 364 HPI 366 (409)
Q Consensus 364 s~~ 366 (409)
+|-
T Consensus 431 sp~ 433 (435)
T PRK05137 431 SPL 433 (435)
T ss_pred CCC
Confidence 873
No 226
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=1.3e-15 Score=133.00 Aligned_cols=234 Identities=20% Similarity=0.193 Sum_probs=151.4
Q ss_pred CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec---CCEEEEEEcCCCccccccceeceeeeeeeecCC
Q 015301 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI---CAIVNIVDVGSSARESLANVTEIHKGLDFSADG 138 (409)
Q Consensus 62 ~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (409)
..|.+||.+.. ...... .+...+.+.+|+|||+.|+..+. +..|.+||+.+++........
T Consensus 184 ~~l~i~D~~g~-~~~~lt---~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~------------ 247 (433)
T PRK04922 184 YALQVADSDGY-NPQTIL---RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR------------ 247 (433)
T ss_pred EEEEEECCCCC-CceEee---cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC------------
Confidence 46889998654 333322 23347889999999999998864 347999999877543222111
Q ss_pred CCcceeeEEEEEcCCCCeEEEE-EecC--eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee-CCCe--EEEe
Q 015301 139 DEDEFGIFSVKFSTDGQELVAA-GSDN--FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDSL--CKVW 212 (409)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~--i~iw 212 (409)
....+.+|+|+|+.|+.. +.++ .|++||+.+++.. .+..+.......+|+ ++++.|+..+ .+|. |.++
T Consensus 248 ----g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~s-pDG~~l~f~sd~~g~~~iy~~ 321 (433)
T PRK04922 248 ----GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWA-PDGKSIYFTSDRGGRPQIYRV 321 (433)
T ss_pred ----CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEE
Confidence 124468999999987644 4444 6999999888754 455555556788999 7888777665 4555 5555
Q ss_pred cccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC---cEEEeeCCCCcccccccccccccccccccccccccc
Q 015301 213 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ---TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYA 289 (409)
Q Consensus 213 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (409)
|+. .+. ...+..+.......+|+|+|++|+..+.++ .|.+||+.+...
T Consensus 322 dl~----~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~------------------------ 372 (433)
T PRK04922 322 AAS----GGS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV------------------------ 372 (433)
T ss_pred ECC----CCC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe------------------------
Confidence 542 222 222222333445689999999988765443 589999866221
Q ss_pred eeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC---CeEEEEEccCCceEEEeccCCcceeeeEEec
Q 015301 290 RRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD---NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHP 365 (409)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~ 365 (409)
..+.... ....+.|+|||++|+..+.+ +.++++++. +.....+..+.+.+...+|+|
T Consensus 373 -----------~~Lt~~~-------~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 373 -----------RTLTPGS-------LDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -----------EECCCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 1111110 01245799999988877663 468888874 455666666667788888987
No 227
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=6.6e-15 Score=113.38 Aligned_cols=240 Identities=13% Similarity=0.166 Sum_probs=157.5
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE-EEEe---
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV-AAGS--- 162 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~--- 162 (409)
...+++|+.|...+++|..+| .+||+.+.-+.......... ...+..+-| ..++|+ +|+.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~-------------G~~~veMLf--R~N~laLVGGg~~p 70 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDG-------------GFKIVEMLF--RSNYLALVGGGSRP 70 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccC-------------chhhhhHhh--hhceEEEecCCCCC
Confidence 355699999999999888666 78999876332111111100 012333333 223333 3333
Q ss_pred ---cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccc--cceeEE
Q 015301 163 ---DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL--EGITFI 237 (409)
Q Consensus 163 ---d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~v~~~ 237 (409)
-..|.|||-...+++.++. ...+|.++.+. + +.|++.- ++.|++|... .+.+.+..+.... ....++
T Consensus 71 ky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~-r--~riVvvl-~~~I~VytF~---~n~k~l~~~et~~NPkGlC~~ 142 (346)
T KOG2111|consen 71 KYPPNKVIIWDDLKERCIIELS-FNSEIKAVKLR-R--DRIVVVL-ENKIYVYTFP---DNPKLLHVIETRSNPKGLCSL 142 (346)
T ss_pred CCCCceEEEEecccCcEEEEEE-eccceeeEEEc-C--CeEEEEe-cCeEEEEEcC---CChhheeeeecccCCCceEee
Confidence 2579999977777777776 57899999997 3 3455543 5789999864 2334444443222 223333
Q ss_pred EEcCCCCeEEE-EeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEE
Q 015301 238 DSRRDGRYFIS-NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCY 316 (409)
Q Consensus 238 ~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (409)
+-..+..+|+. |-.-|.|+|-|+..... .....+..|... +
T Consensus 143 ~~~~~k~~LafPg~k~GqvQi~dL~~~~~--------------------------------~~p~~I~AH~s~------I 184 (346)
T KOG2111|consen 143 CPTSNKSLLAFPGFKTGQVQIVDLASTKP--------------------------------NAPSIINAHDSD------I 184 (346)
T ss_pred cCCCCceEEEcCCCccceEEEEEhhhcCc--------------------------------CCceEEEcccCc------e
Confidence 22223334444 33468999999876321 123455666633 3
Q ss_pred EeeeecCCCCEEEEEeCCCe-EEEEEccCCceEEEeccC--CcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 317 FSPEYSTAQKYIYTGSSDNS-VYIYDLVSGAQVAKLDFH--NAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 317 ~~~~~s~~~~~l~~~~~dg~-v~i~d~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
-+++...+|.++|+++..|+ |+|||..+|+.+.+++.- ...|.+++|||+..+|+.+|.-|+|.|+.+....
T Consensus 185 acv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 185 ACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 34467778999999999987 799999999999999642 4579999999999999999999999999997644
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=4.2e-15 Score=129.07 Aligned_cols=203 Identities=15% Similarity=0.128 Sum_probs=135.5
Q ss_pred CCCceeecCCCCeEEEEECCCCCEEEEEeC---CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE-ecC
Q 015301 31 NGPWKVDGMNSRVYTSQFSNDGSFFVAASQ---ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SIC 106 (409)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d 106 (409)
.....+..+...+.+.+|||||+.|+..+. +..|.+|++.+++. .......+ .+...+|+|||+.|+.. +.+
T Consensus 189 ~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-~~l~~~~~---~~~~~~~SPDG~~La~~~~~~ 264 (429)
T PRK03629 189 YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPR---HNGAPAFSPDGSKLAFALSKT 264 (429)
T ss_pred CCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-EEccCCCC---CcCCeEECCCCCEEEEEEcCC
Confidence 345667777889999999999999986542 35799999987743 22222333 34568999999988865 334
Q ss_pred C--EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec-C--eEEEEECCCCeeeeEEc
Q 015301 107 A--IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-N--FIYVYDLQANKCSLRIP 181 (409)
Q Consensus 107 g--~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~v~d~~~~~~~~~~~ 181 (409)
| .|.+||+.+++....... ...+....|+|+|+.|+..+.+ + .|+++|+.+++.. .+.
T Consensus 265 g~~~I~~~d~~tg~~~~lt~~----------------~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt 327 (429)
T PRK03629 265 GSLNLYVMDLASGQIRQVTDG----------------RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RIT 327 (429)
T ss_pred CCcEEEEEECCCCCEEEccCC----------------CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eee
Confidence 4 588999987654322211 1136778999999998877754 3 5666677766543 343
Q ss_pred CCCCCeEEEEEeCCCCcEEEEeeCC---CeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCc---E
Q 015301 182 AHKSDVNTVCFADETGHLIFSGSDD---SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT---T 255 (409)
Q Consensus 182 ~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i 255 (409)
.+........|+ |+++.|+..+.+ ..|.+||+. .+.. ..+... .......|+|||+.|+.++.++. +
T Consensus 328 ~~~~~~~~~~~S-pDG~~Ia~~~~~~g~~~I~~~dl~----~g~~-~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 328 WEGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLA----TGGV-QVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVL 400 (429)
T ss_pred cCCCCccCEEEC-CCCCEEEEEEccCCCceEEEEECC----CCCe-EEeCCC-CCCCCceECCCCCEEEEEEcCCCceEE
Confidence 344456678899 888888776543 357888864 3322 222221 22346789999999999888764 5
Q ss_pred EEeeCC
Q 015301 256 KLWDIR 261 (409)
Q Consensus 256 ~iwd~~ 261 (409)
.++++.
T Consensus 401 ~~~~~~ 406 (429)
T PRK03629 401 NLVSTD 406 (429)
T ss_pred EEEECC
Confidence 666664
No 229
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.7e-14 Score=119.44 Aligned_cols=320 Identities=11% Similarity=0.110 Sum_probs=202.0
Q ss_pred eeeEEecCceeEeeccceEEEEeeec--CCCceeecCCCCeEEEEECCCCCEEEEEeC-----------CCcEEEEEcCC
Q 015301 5 REVNYSGRGRFSAADSCHVLSRYLPV--NGPWKVDGMNSRVYTSQFSNDGSFFVAASQ-----------ESNIKVYNVDK 71 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~--~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~-----------d~~i~vw~~~~ 71 (409)
.-+.|||-|.|+++--...+..+--. ...+++ .|. .|.-+.|||..+||+|-+. ...++|||+.+
T Consensus 214 tyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eeEEecCCceEEEEEeccceeeecCccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 45899999999988543332222111 111111 243 4889999999999999653 15699999999
Q ss_pred Ceeeeeeeec--ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEE
Q 015301 72 NWKIQKDIET--KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVK 149 (409)
Q Consensus 72 ~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (409)
|......... ....++ -..||.|++++|--.. ..|.||+..+-.......+. ..+|....
T Consensus 292 G~lkrsF~~~~~~~~~WP--~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslk---------------i~gIr~Fs 353 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWP--IFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLK---------------ISGIRDFS 353 (698)
T ss_pred cchhcceeccCCCccccc--eEEeccCCceeEEecc-ceEEEEecCceeeecccccC---------------CccccCcc
Confidence 9555444332 222223 3689999999997765 56889987664332222111 12588999
Q ss_pred EcCCCCeEEEEEe-----cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee----------CCCeEEEecc
Q 015301 150 FSTDGQELVAAGS-----DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS----------DDSLCKVWDR 214 (409)
Q Consensus 150 ~~~~~~~l~~~~~-----d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~iwd~ 214 (409)
|+|.++.||.=.. -..+.+..+.+++.+++-..|.-.=..+-|- .+|.+|+.-- .-..+.|+.+
T Consensus 354 wsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQ-k~gdyLcvkvdR~tK~~~~g~f~n~eIfri 432 (698)
T KOG2314|consen 354 WSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQ-KSGDYLCVKVDRHTKSKVKGQFSNLEIFRI 432 (698)
T ss_pred cCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEec-cCCcEEEEEEEeeccccccceEeeEEEEEe
Confidence 9999888875433 2467788888887777665555444556676 7788776521 1123566666
Q ss_pred cccccCCceeeeeeccccceeEEEEcCCCCeEEEEeC---CCcEEEeeCCCCccccccccccccccccccccccccccee
Q 015301 215 RCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK---DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARR 291 (409)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (409)
| +...++. ...-...|...+|-|.|+.+++-+. ..++.+|.+++....
T Consensus 433 r---eKdIpve-~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~------------------------- 483 (698)
T KOG2314|consen 433 R---EKDIPVE-VVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK------------------------- 483 (698)
T ss_pred e---ccCCCce-eeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc-------------------------
Confidence 5 2222222 2335678899999999998877654 346888877642111
Q ss_pred ccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe---CCCeEEEEEccCCceEEEeccCCcceeeeEEecCcC
Q 015301 292 LKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS---SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP 368 (409)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 368 (409)
...+..+.. ..+..+.|+|.|++++.+. ..|.+.++|+.......+-.......+.+.|.|.|+
T Consensus 484 -----~~lVk~~dk--------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGR 550 (698)
T KOG2314|consen 484 -----PSLVKELDK--------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGR 550 (698)
T ss_pred -----hhhhhhhcc--------cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCC
Confidence 111222222 1234557889999998875 468899999874332222222223567899999999
Q ss_pred eEEeecC------CCeEEEEecCCC
Q 015301 369 MLISSSW------DCNIVRWEIPGI 387 (409)
Q Consensus 369 ~l~s~~~------dg~i~iw~~~~~ 387 (409)
|++|++. |.--++|++...
T Consensus 551 YvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 551 YVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred EEEEeeehhhhccccceEEEEeecH
Confidence 9999874 556778887654
No 230
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.72 E-value=4.6e-15 Score=113.00 Aligned_cols=275 Identities=17% Similarity=0.150 Sum_probs=180.1
Q ss_pred CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC---CCc-EEEEEecCCEEEEEEcCCCccccccceeceeeeeeeec
Q 015301 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP---DQR-FLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSA 136 (409)
Q Consensus 61 d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 136 (409)
-|.+.+|++...+..............+..|.|.- ++. .|+-+...|.|.++.................. ..
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~k---i~- 120 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKK---IS- 120 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhh---hh-
Confidence 36788999887644331111122334577777753 344 56677788999999876544322211111100 00
Q ss_pred CCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeee--eEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecc
Q 015301 137 DGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCS--LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDR 214 (409)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 214 (409)
.....++.|++.+..++++..+|.+.+.+....... +..+.|..+....+|+..+.+++++|+.|+.+.-||+
T Consensus 121 -----~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~ 195 (339)
T KOG0280|consen 121 -----VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDI 195 (339)
T ss_pred -----heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEe
Confidence 002567889999999999999999997776655444 3788999999999999888899999999999999999
Q ss_pred cccccCCceeeeeeccccceeEEEEcC-CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceecc
Q 015301 215 RCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK 293 (409)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (409)
| .+..-.....+-|...|.+|.-+| .+.++++|+.|..|++||.|+...+.....
T Consensus 196 R--~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~---------------------- 251 (339)
T KOG0280|consen 196 R--IPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK---------------------- 251 (339)
T ss_pred c--CCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc----------------------
Confidence 8 333333333667888999998776 577999999999999999997543221100
Q ss_pred ccCccceeeeecccceeeeeEEEEeeeecCC--CCEEEEEeCCCeEEEEEccCC--c---eEEEeccCCcceeeeEEecC
Q 015301 294 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTA--QKYIYTGSSDNSVYIYDLVSG--A---QVAKLDFHNAPVRDCCWHPI 366 (409)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~~~~dg~v~i~d~~~~--~---~~~~~~~~~~~v~~~~~s~~ 366 (409)
.. ..+|....+|. +++|+++-.+| .+|-+...+ + .....+.|.+-+..-.|...
T Consensus 252 --------------v~----GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~ 312 (339)
T KOG0280|consen 252 --------------VG----GGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK 312 (339)
T ss_pred --------------cc----cceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccc
Confidence 00 22233333331 34455555555 567666544 3 34555678888888888655
Q ss_pred cCeEEeec-CCCeEE-EEecCCC
Q 015301 367 YPMLISSS-WDCNIV-RWEIPGI 387 (409)
Q Consensus 367 ~~~l~s~~-~dg~i~-iw~~~~~ 387 (409)
...|+|++ .|..++ +|-.-++
T Consensus 313 ~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 313 DSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cceeeeeeccccceeeeeeeccC
Confidence 55788875 577755 7865443
No 231
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.72 E-value=3e-14 Score=116.75 Aligned_cols=317 Identities=15% Similarity=0.154 Sum_probs=199.9
Q ss_pred eeeEEecCceeEeeccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCC---------------CcEEEEEc
Q 015301 5 REVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQE---------------SNIKVYNV 69 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d---------------~~i~vw~~ 69 (409)
+.+.+||.|.|+++.....+.-+-.........--...|.-+.|||.++||.|=+.. ..+.+||.
T Consensus 36 ~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~ 115 (561)
T COG5354 36 AYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDI 115 (561)
T ss_pred hheeecCcchheehhhccceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEec
Confidence 567899999998886644333322222222233334569999999999999986543 34999999
Q ss_pred CCCeeeeeeeecccccceEE-EEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEE
Q 015301 70 DKNWKIQKDIETKALRWTIT-DTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSV 148 (409)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (409)
.++..+........ ..... -+.|+-+.+++|-. ....++++++ +............ ...+...
T Consensus 116 ~sg~iv~sf~~~~q-~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr-------------~~gi~dF 179 (561)
T COG5354 116 ASGMIVFSFNGISQ-PYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLR-------------PVGILDF 179 (561)
T ss_pred cCceeEeeccccCC-cccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhcc-------------ccceeeE
Confidence 99855443322222 11122 46788888877654 3456899997 4333211111100 1248888
Q ss_pred EEcCCC--CeEEE-----EEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee-----------CCCeEE
Q 015301 149 KFSTDG--QELVA-----AGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-----------DDSLCK 210 (409)
Q Consensus 149 ~~~~~~--~~l~~-----~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------~dg~i~ 210 (409)
.|+|.+ ..|+. .+..+.+++|.+..+..+.+-.-....-..+.|. +.+++|+.-- ....++
T Consensus 180 sisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~-~~g~~ll~l~~t~~ksnKsyfgesnLy 258 (561)
T COG5354 180 SISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ-VLGKYLLVLVMTHTKSNKSYFGESNLY 258 (561)
T ss_pred EecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe-cCCceEEEEEEEeeecccceeccceEE
Confidence 888853 33443 3457899999998776655433233334678888 6676665421 124577
Q ss_pred EecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEe--CCCcEEEeeCCCCccccccccccccccccccccccccc
Q 015301 211 VWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG--KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSY 288 (409)
Q Consensus 211 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (409)
+++++ ...+.......++|...+|.|.++.+++.+ .+-.+.++|++..
T Consensus 259 l~~~~-----e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N------------------------- 308 (561)
T COG5354 259 LLRIT-----ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN------------------------- 308 (561)
T ss_pred EEeec-----ccccceeccccccceeeeecccCCceeEEecccccceeecccccc-------------------------
Confidence 88864 223333335678999999999988876655 6788999998862
Q ss_pred ceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC---CeEEEEEccCCceEE-EeccCCcceeeeEEe
Q 015301 289 ARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD---NSVYIYDLVSGAQVA-KLDFHNAPVRDCCWH 364 (409)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~v~i~d~~~~~~~~-~~~~~~~~v~~~~~s 364 (409)
+..+-.... -..+.|||.+++++.++-| |.+-+||......+. .+.+.+ ..-+.|+
T Consensus 309 -----------l~~~~Pe~~-------rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~ws 368 (561)
T COG5354 309 -----------LRFYFPEQK-------RNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWS 368 (561)
T ss_pred -----------eEEecCCcc-------cccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeecc
Confidence 111111111 1123588889999987765 789999987664443 565433 4557899
Q ss_pred cCcCeEEeec------CCCeEEEEecCCCc
Q 015301 365 PIYPMLISSS------WDCNIVRWEIPGIG 388 (409)
Q Consensus 365 ~~~~~l~s~~------~dg~i~iw~~~~~~ 388 (409)
||++++.+.. .|..+.+|++....
T Consensus 369 pd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 369 PDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred CCceEEEecCCCcccccCcceEEEEecCch
Confidence 9999776653 47899999997643
No 232
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=2.5e-15 Score=118.86 Aligned_cols=269 Identities=14% Similarity=0.110 Sum_probs=182.8
Q ss_pred CCCCeEEEEECCCCC--EEEEEeCCCcEEEEEcCCCeeeeee---eecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 39 MNSRVYTSQFSNDGS--FFVAASQESNIKVYNVDKNWKIQKD---IETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 39 h~~~v~~~~~s~~~~--~l~t~~~d~~i~vw~~~~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
-...|..++|.-+++ .|...+.|..+..+.+......... ........+|..++.. +..|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 446788888876654 4544546666777777665333221 0122223456666554 34677888899999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE-EEEec--CeEEEEECCCCeeeeEEcCC-------
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV-AAGSD--NFIYVYDLQANKCSLRIPAH------- 183 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d--~~i~v~d~~~~~~~~~~~~~------- 183 (409)
...+............ ..++..+.-++...+++ +|+.. ..+.+||+++.+.+.+-+.-
T Consensus 132 ~k~~d~hss~l~~la~------------g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~L 199 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLAT------------GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGL 199 (412)
T ss_pred ccCCccccccceeeec------------CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccc
Confidence 9865532111111000 11467777777655554 58877 78999999988666543221
Q ss_pred --CCCeEEEEEeCCC--CcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEee
Q 015301 184 --KSDVNTVCFADET--GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 259 (409)
Q Consensus 184 --~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 259 (409)
.-.++++.|. +. ...|++++.-+.+++||.+ ...+++..+.-...+++++...|+++.++++..-|.+..||
T Consensus 200 rVPvW~tdi~Fl-~g~~~~~fat~T~~hqvR~YDt~---~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD 275 (412)
T KOG3881|consen 200 RVPVWITDIRFL-EGSPNYKFATITRYHQVRLYDTR---HQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFD 275 (412)
T ss_pred eeeeeeccceec-CCCCCceEEEEecceeEEEecCc---ccCcceeEeccccCcceeeeecCCCcEEEEecccchhheec
Confidence 1246788888 44 6789999999999999986 45667777777788999999999999999999999999999
Q ss_pred CCCCcccccccccccccccccccccccccceeccccCccceee-eecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEE
Q 015301 260 IRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLAT-YKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVY 338 (409)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~ 338 (409)
++... .+.. +.+.. ..+.++...|.+++|++++.|..|+
T Consensus 276 ~r~~k----------------------------------l~g~~~kg~t------Gsirsih~hp~~~~las~GLDRyvR 315 (412)
T KOG3881|consen 276 LRGGK----------------------------------LLGCGLKGIT------GSIRSIHCHPTHPVLASCGLDRYVR 315 (412)
T ss_pred ccCce----------------------------------eeccccCCcc------CCcceEEEcCCCceEEeeccceeEE
Confidence 99832 2222 33322 3344556778889999999999999
Q ss_pred EEEccCCceEEEeccCCcceeeeEEecC
Q 015301 339 IYDLVSGAQVAKLDFHNAPVRDCCWHPI 366 (409)
Q Consensus 339 i~d~~~~~~~~~~~~~~~~v~~~~~s~~ 366 (409)
|+|+.+.+++.... -...++.+-+.++
T Consensus 316 IhD~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 316 IHDIKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred Eeecccchhhhhhh-hhccccEEEecCC
Confidence 99999977765543 2345566666544
No 233
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=3.5e-16 Score=127.08 Aligned_cols=266 Identities=15% Similarity=0.196 Sum_probs=189.3
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC--CCCeE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--DGQEL 157 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l 157 (409)
.+..|.+.|..+.|+..|..|++++.|..|.+||+.......... .+|...|....|-| +...+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~--------------SGH~~NvfQaKFiP~s~d~ti 202 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE--------------SGHCNNVFQAKFIPFSGDRTI 202 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc--------------cccccchhhhhccCCCCCcCc
Confidence 355688899999999999999999999999999998876543322 24555677778887 44678
Q ss_pred EEEEecCeEEEEECCC-Cee--eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccc--
Q 015301 158 VAAGSDNFIYVYDLQA-NKC--SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE-- 232 (409)
Q Consensus 158 ~~~~~d~~i~v~d~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-- 232 (409)
++++.||.+++=.+.. +.. ...+..|.++|..++.-|....-|.+++.|+.+.-+|+|......... ....+..
T Consensus 203 ~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~ 281 (559)
T KOG1334|consen 203 VTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKER 281 (559)
T ss_pred eeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccCCccc
Confidence 9999999999877643 322 234567999999999998888999999999999999998543333333 2222333
Q ss_pred -ceeEEEEcCCCC-eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeeccccee
Q 015301 233 -GITFIDSRRDGR-YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR 310 (409)
Q Consensus 233 -~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (409)
....++..|... .+++++.|..+++||.+........ ..+..+..+....
T Consensus 282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n----------------------------~~~~~f~p~hl~~ 333 (559)
T KOG1334|consen 282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENN----------------------------GVLDKFCPHHLVE 333 (559)
T ss_pred eeeeeEecCCCCccccccCChhhhhhhhcccchhhcccc----------------------------chhhhcCCccccc
Confidence 567888888655 7999999999999999874332111 1233333333222
Q ss_pred eeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccC--C----------ceEEE-eccCCc--ceeeeEE-ecCcCeEEeec
Q 015301 311 TLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS--G----------AQVAK-LDFHNA--PVRDCCW-HPIYPMLISSS 374 (409)
Q Consensus 311 ~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~--~----------~~~~~-~~~~~~--~v~~~~~-s~~~~~l~s~~ 374 (409)
.....+..+.|+.++.-|+++..|-.|+++.-.- | ..+.. +++|.. .|..+-| -|...|+++|+
T Consensus 334 d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS 413 (559)
T KOG1334|consen 334 DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS 413 (559)
T ss_pred cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecC
Confidence 2233455667886777777777888899995432 2 12223 678854 5667754 67788999999
Q ss_pred CCCeEEEEecCCCc
Q 015301 375 WDCNIVRWEIPGIG 388 (409)
Q Consensus 375 ~dg~i~iw~~~~~~ 388 (409)
.-|.|.||+-.+++
T Consensus 414 DCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 414 DCGHIFIWDKKTGE 427 (559)
T ss_pred ccceEEEEecchhH
Confidence 99999999976654
No 234
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.69 E-value=3.1e-13 Score=113.91 Aligned_cols=265 Identities=14% Similarity=0.162 Sum_probs=155.6
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVD 113 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w~ 113 (409)
++......-..+.|+|||+++++++.||.|.++|+.+.+.+.+.... . ....+++++||++++++. .++.+.++|
T Consensus 31 ~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~---~~~~i~~s~DG~~~~v~n~~~~~v~v~D 106 (369)
T PF02239_consen 31 RIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-G---NPRGIAVSPDGKYVYVANYEPGTVSVID 106 (369)
T ss_dssp EEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-S---EEEEEEE--TTTEEEEEEEETTEEEEEE
T ss_pred EEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-C---CcceEEEcCCCCEEEEEecCCCceeEec
Confidence 44433333345789999999999999999999999999766654332 2 478899999999998775 689999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCCCeeee-EEcCCCCCeEEEE
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKCSL-RIPAHKSDVNTVC 191 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~-~~~~~~~~v~~~~ 191 (409)
.++.+............ ......+..+..+|....+++.-. .+.|.+.|....+.+. .............
T Consensus 107 ~~tle~v~~I~~~~~~~--------~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~ 178 (369)
T PF02239_consen 107 AETLEPVKTIPTGGMPV--------DGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGG 178 (369)
T ss_dssp TTT--EEEEEE--EE-T--------TTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEE
T ss_pred cccccceeecccccccc--------cccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccc
Confidence 98877644332221111 012335778888888886666655 4889999987654432 2222455677889
Q ss_pred EeCCCCcEEEEe-eCCCeEEEeccccc---------------------------------------------------cc
Q 015301 192 FADETGHLIFSG-SDDSLCKVWDRRCF---------------------------------------------------IS 219 (409)
Q Consensus 192 ~~~~~~~~l~~~-~~dg~i~iwd~~~~---------------------------------------------------~~ 219 (409)
|. +++++++++ ..+..|-++|.... ..
T Consensus 179 ~d-pdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~ 257 (369)
T PF02239_consen 179 FD-PDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDY 257 (369)
T ss_dssp E--TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTT
T ss_pred cC-cccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhh
Confidence 98 777776554 45667777775410 00
Q ss_pred CCceeeeeeccccceeEEEEcCCCCeEEEE----eCCCcEEEeeCCCCcccccccccccccccccccccccccceecccc
Q 015301 220 KGRANGVLMGHLEGITFIDSRRDGRYFISN----GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHP 295 (409)
Q Consensus 220 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (409)
..+.+..+.....+ ..+..+|+++++.+. ...+.|.++|.++.+
T Consensus 258 ~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~------------------------------- 305 (369)
T PF02239_consen 258 AWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK------------------------------- 305 (369)
T ss_dssp BTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE-------------------------------
T ss_pred cCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc-------------------------------
Confidence 01111112212222 445667888888776 345788888887732
Q ss_pred CccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC--CCeEEEEEccCCceEEEec
Q 015301 296 HDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS--DNSVYIYDLVSGAQVAKLD 352 (409)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--dg~v~i~d~~~~~~~~~~~ 352 (409)
.+..+..... ..+..+.|+++|+.+..+.. ++.|.+||..+.+.+.++.
T Consensus 306 ---~~~~i~~~~~-----~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 306 ---VVKTITPGPG-----KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp ---EEE-HHHHHT-------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ---eeEEEeccCC-----CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 1222221111 11456689999997766554 3479999999999998887
No 235
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.69 E-value=6.1e-13 Score=112.48 Aligned_cols=287 Identities=16% Similarity=0.141 Sum_probs=172.9
Q ss_pred EEEEeCC----CcEEEEEcCCC-eeeeeeeecccccceEEEEEeCCCCcEEEEEec----CCEEEEEEcCCC--cccccc
Q 015301 55 FVAASQE----SNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASI----CAIVNIVDVGSS--ARESLA 123 (409)
Q Consensus 55 l~t~~~d----~~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~~w~~~~~--~~~~~~ 123 (409)
+++|+.. +.|.+|+++.. ..+..... .........++++|++++|.++.. ++.|..|++... ......
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~-~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQT-VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEE-EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeee-ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4455554 68999988322 23332222 112235777999999999998866 578999988764 322222
Q ss_pred ceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCC-CeeeeE---Ec----------CCCCCeE
Q 015301 124 NVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQA-NKCSLR---IP----------AHKSDVN 188 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~-~~~~~~---~~----------~~~~~v~ 188 (409)
..... ......++++|++++|+++.. +|.|.++++.. +..... +. .......
T Consensus 81 ~~~~~-------------g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H 147 (345)
T PF10282_consen 81 SVPSG-------------GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPH 147 (345)
T ss_dssp EEEES-------------SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEE
T ss_pred eeccC-------------CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccce
Confidence 21110 114667999999999999875 89999999976 443322 11 1234578
Q ss_pred EEEEeCCCCcEEEEee-CCCeEEEecccccccCCceeeee-eccccceeEEEEcCCCCeEEEEeC-CCcEEEeeCCCCcc
Q 015301 189 TVCFADETGHLIFSGS-DDSLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSS 265 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~ 265 (409)
++.++ |+++++++.. ....|.+|++............+ .........+.|+|+++++.+..+ ++.|.++++.....
T Consensus 148 ~v~~~-pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g 226 (345)
T PF10282_consen 148 QVVFS-PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG 226 (345)
T ss_dssp EEEE--TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred eEEEC-CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC
Confidence 89999 7888777654 34579999975211111111122 233456789999999998876655 77899998873111
Q ss_pred cccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-CCeEEEEEcc-
Q 015301 266 NTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLV- 343 (409)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v~i~d~~- 343 (409)
.. ..+..................+.++|||++|+++.. ++.|.+|++.
T Consensus 227 ~~------------------------------~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 227 SL------------------------------TEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp EE------------------------------EEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred ce------------------------------eEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 00 001111100000000012335578999999888764 6789999993
Q ss_pred -CC--ceEEEeccCCcceeeeEEecCcCeEEeec-CCCeEEEEecCC
Q 015301 344 -SG--AQVAKLDFHNAPVRDCCWHPIYPMLISSS-WDCNIVRWEIPG 386 (409)
Q Consensus 344 -~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~~ 386 (409)
++ +.+..+.........++++|+|++|+++. .++.|.+|+++.
T Consensus 277 ~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 277 ATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp TTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred CCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 23 33444444445578999999999888765 667999998853
No 236
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=4.4e-14 Score=123.57 Aligned_cols=217 Identities=15% Similarity=0.120 Sum_probs=141.0
Q ss_pred EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe---cCeEEEEECCCCeeeeEEcCCC
Q 015301 108 IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDLQANKCSLRIPAHK 184 (409)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~ 184 (409)
.|.++|.......... .+...+...+|+|||+.|+..+. +..|++||+.+++.. .+..+.
T Consensus 183 ~l~~~d~dg~~~~~lt----------------~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~ 245 (435)
T PRK05137 183 RLAIMDQDGANVRYLT----------------DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFP 245 (435)
T ss_pred EEEEECCCCCCcEEEe----------------cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCC
Confidence 6888887654432221 12235899999999999988764 468999999888654 344566
Q ss_pred CCeEEEEEeCCCCcEEE-EeeCCCe--EEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeC-CC--cEEEe
Q 015301 185 SDVNTVCFADETGHLIF-SGSDDSL--CKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQ--TTKLW 258 (409)
Q Consensus 185 ~~v~~~~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iw 258 (409)
+.+...+|+ |+++.|+ +.+.++. |.+||+. .+ ....+..+........|+|||+.|+..+. +| .|.++
T Consensus 246 g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~~----~~-~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~ 319 (435)
T PRK05137 246 GMTFAPRFS-PDGRKVVMSLSQGGNTDIYTMDLR----SG-TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVM 319 (435)
T ss_pred CcccCcEEC-CCCCEEEEEEecCCCceEEEEECC----CC-ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEE
Confidence 677889999 7777654 5566665 6666753 33 33445555566677899999998887764 33 57777
Q ss_pred eCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC---C
Q 015301 259 DIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD---N 335 (409)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g 335 (409)
|+.... ...+.... .....+.|+|||+.|+....+ .
T Consensus 320 d~~g~~-----------------------------------~~~lt~~~------~~~~~~~~SpdG~~ia~~~~~~~~~ 358 (435)
T PRK05137 320 NADGSN-----------------------------------PRRISFGG------GRYSTPVWSPRGDLIAFTKQGGGQF 358 (435)
T ss_pred ECCCCC-----------------------------------eEEeecCC------CcccCeEECCCCCEEEEEEcCCCce
Confidence 765421 11111111 112346799999999887653 3
Q ss_pred eEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCC------CeEEEEecCCCccc
Q 015301 336 SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWD------CNIVRWEIPGIGEA 390 (409)
Q Consensus 336 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------g~i~iw~~~~~~~~ 390 (409)
.|.+||+.++.. ..+. ....+..+.|+|||+.|+..+.+ ..|++.++......
T Consensus 359 ~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~ 417 (435)
T PRK05137 359 SIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER 417 (435)
T ss_pred EEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE
Confidence 688889865543 3333 23357788999999977664432 36888888665443
No 237
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.69 E-value=8.5e-16 Score=126.38 Aligned_cols=186 Identities=16% Similarity=0.243 Sum_probs=131.5
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee--cccccceEEEEEeCCCC-cEEEEEecCCEEEEEEcCCCccccccce
Q 015301 49 SNDGSFFVAASQESNIKVYNVDKNWKIQKDIE--TKALRWTITDTSLSPDQ-RFLVYASICAIVNIVDVGSSARESLANV 125 (409)
Q Consensus 49 s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 125 (409)
.|++--|+.|-.-|.|.+.|.... .+.+++. ..-.+..|+++.|-|.+ ..++++-.+|.++++|............
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~-~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~ 260 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINF-EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSY 260 (636)
T ss_pred CCCCcceEEeeccCceEEecchhh-HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcc
Confidence 345556777777788888886542 2221111 11123579999999854 4556667899999998742211100000
Q ss_pred eceeeeee------eecCC-------CCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 126 TEIHKGLD------FSADG-------DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 126 ~~~~~~~~------~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
......-. ..... .--...|+..+|+|||++||+.+.||.++|+|..+.+++..++.--+...|++|
T Consensus 261 ~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcW 340 (636)
T KOG2394|consen 261 QALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCW 340 (636)
T ss_pred cccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEE
Confidence 00000000 00000 011236899999999999999999999999999999988877777788999999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEc
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (409)
+ ||+++|++|++|.-|.||.+ ...+.+..-.+|+..|..++|.
T Consensus 341 S-PDGKyIvtGGEDDLVtVwSf----~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 341 S-PDGKYIVTGGEDDLVTVWSF----EERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred c-CCccEEEecCCcceEEEEEe----ccceEEEeccccccceeeEeec
Confidence 9 99999999999999999996 4788888889999999999998
No 238
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=2.6e-14 Score=124.35 Aligned_cols=197 Identities=17% Similarity=0.167 Sum_probs=128.5
Q ss_pred eeEEEEEcCCCCeEEEEEec---CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEE-EeeCCCeEEEeccccccc
Q 015301 144 GIFSVKFSTDGQELVAAGSD---NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIF-SGSDDSLCKVWDRRCFIS 219 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~ 219 (409)
.+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+...+|+ |+++.|+ +.+.+|...+|.+..
T Consensus 197 ~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~--- 271 (427)
T PRK02889 197 PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWS-PDGRTLAVALSRDGNSQIYTVNA--- 271 (427)
T ss_pred CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEEC-CCCCEEEEEEccCCCceEEEEEC---
Confidence 58889999999999887643 469999999887543 33334556789999 7887665 567788877776541
Q ss_pred CCceeeeeeccccceeEEEEcCCCCeEEEEeC-CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcc
Q 015301 220 KGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQ 298 (409)
Q Consensus 220 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (409)
.+.....+..+........|+|||+.|+..+. +|...+|.+.... .
T Consensus 272 ~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~---------------------------------g 318 (427)
T PRK02889 272 DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG---------------------------------G 318 (427)
T ss_pred CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC---------------------------------C
Confidence 22234444445555667889999998876654 4666777654211 0
Q ss_pred ceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC---eEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecC
Q 015301 299 SLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN---SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSW 375 (409)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 375 (409)
....+.... .....+.|||||++|+..+.++ .|++||+.+++... +.. ........|+||++.|+.++.
T Consensus 319 ~~~~lt~~g------~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 319 AAQRVTFTG------SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQ 390 (427)
T ss_pred ceEEEecCC------CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEe
Confidence 011111000 0112467999999998877654 69999998887543 332 234467899999997777664
Q ss_pred CC---eEEEEecCC
Q 015301 376 DC---NIVRWEIPG 386 (409)
Q Consensus 376 dg---~i~iw~~~~ 386 (409)
++ .+.+-++..
T Consensus 391 ~~g~~~l~~~~~~g 404 (427)
T PRK02889 391 QGGRSVLAAVSSDG 404 (427)
T ss_pred cCCCEEEEEEECCC
Confidence 43 355555543
No 239
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=3e-14 Score=124.42 Aligned_cols=205 Identities=16% Similarity=0.084 Sum_probs=136.5
Q ss_pred cCCCceeecCCCCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE-ec
Q 015301 30 VNGPWKVDGMNSRVYTSQFSNDGSFFVAASQE---SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SI 105 (409)
Q Consensus 30 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~ 105 (409)
...+..+..|...+.+.+|+|||+.|+..+.+ ..|++|++.++... ...... +...+.+|+|||+.|+.. +.
T Consensus 193 g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~---g~~~~~~~SpDG~~l~~~~s~ 268 (433)
T PRK04922 193 GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFR---GINGAPSFSPDGRRLALTLSR 268 (433)
T ss_pred CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCC---CCccCceECCCCCEEEEEEeC
Confidence 44556788888899999999999999987643 46999999877432 222222 235578999999988644 44
Q ss_pred CC--EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cC--eEEEEECCCCeeeeEE
Q 015301 106 CA--IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DN--FIYVYDLQANKCSLRI 180 (409)
Q Consensus 106 dg--~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~ 180 (409)
+| .|++||+.+++....... .......+|+|||+.|+..+. +| .|+++|+.+++... +
T Consensus 269 ~g~~~Iy~~d~~~g~~~~lt~~----------------~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-l 331 (433)
T PRK04922 269 DGNPEIYVMDLGSRQLTRLTNH----------------FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-L 331 (433)
T ss_pred CCCceEEEEECCCCCeEECccC----------------CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-e
Confidence 44 699999987764322111 112456799999999887764 33 47777887766433 3
Q ss_pred cCCCCCeEEEEEeCCCCcEEEEeeCCC---eEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC---Cc
Q 015301 181 PAHKSDVNTVCFADETGHLIFSGSDDS---LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD---QT 254 (409)
Q Consensus 181 ~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~ 254 (409)
..+......++|+ |+++.|+..+.++ .|.+||+. .+... .+. +........|+|||++++..+.+ +.
T Consensus 332 t~~g~~~~~~~~S-pDG~~Ia~~~~~~~~~~I~v~d~~----~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~ 404 (433)
T PRK04922 332 TFQGNYNARASVS-PDGKKIAMVHGSGGQYRIAVMDLS----TGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGV 404 (433)
T ss_pred ecCCCCccCEEEC-CCCCEEEEEECCCCceeEEEEECC----CCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceE
Confidence 2333445578999 7888887765433 58899964 33322 222 22234567899999988776653 35
Q ss_pred EEEeeCCC
Q 015301 255 TKLWDIRK 262 (409)
Q Consensus 255 i~iwd~~~ 262 (409)
|.++++..
T Consensus 405 L~~~~~~g 412 (433)
T PRK04922 405 LAAVSTDG 412 (433)
T ss_pred EEEEECCC
Confidence 67777643
No 240
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.68 E-value=8e-15 Score=112.05 Aligned_cols=152 Identities=11% Similarity=0.205 Sum_probs=105.8
Q ss_pred EEEEEeCCCCcEEEEeeC----------CCeEEEecccccccCCceeeeeec-cccceeEEEEcCCCCeEEEE--eCCCc
Q 015301 188 NTVCFADETGHLIFSGSD----------DSLCKVWDRRCFISKGRANGVLMG-HLEGITFIDSRRDGRYFISN--GKDQT 254 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~dg~ 254 (409)
..+.|+ ++|+.|+.-.. -|...+|.++. .......+.- ..++|.+++|+|+|+.|++. ..++.
T Consensus 9 ~~~~W~-~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~---~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~ 84 (194)
T PF08662_consen 9 AKLHWQ-PSGDYLLVKVQTRVDKSGKSYYGEFELFYLNE---KNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK 84 (194)
T ss_pred EEEEec-ccCCEEEEEEEEeeccCcceEEeeEEEEEEec---CCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcc
Confidence 467788 66666554332 13455666541 2233333332 34579999999999987654 35779
Q ss_pred EEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-
Q 015301 255 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS- 333 (409)
Q Consensus 255 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~- 333 (409)
+.+||++. ..+..+.... ...+.|||+|++|++++.
T Consensus 85 v~lyd~~~-----------------------------------~~i~~~~~~~--------~n~i~wsP~G~~l~~~g~~ 121 (194)
T PF08662_consen 85 VTLYDVKG-----------------------------------KKIFSFGTQP--------RNTISWSPDGRFLVLAGFG 121 (194)
T ss_pred cEEEcCcc-----------------------------------cEeEeecCCC--------ceEEEECCCCCEEEEEEcc
Confidence 99999863 2333333221 124579999999999874
Q ss_pred --CCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecC------CCeEEEEecCCCc
Q 015301 334 --DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSW------DCNIVRWEIPGIG 388 (409)
Q Consensus 334 --dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~iw~~~~~~ 388 (409)
.|.|.+||+++.+.+.... |. .++.++|+|||++|++++. |+.++||++....
T Consensus 122 n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 122 NLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred CCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeE
Confidence 4779999999999888876 33 4789999999999998864 7899999997543
No 241
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=1e-14 Score=115.42 Aligned_cols=213 Identities=14% Similarity=0.177 Sum_probs=155.1
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcE-EEEEecC--CEEEEEE
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRF-LVYASIC--AIVNIVD 113 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~d--g~i~~w~ 113 (409)
....++|..++.. | ..|++|-.+|.+.+|..+.+...............+..+.-++...+ +++|+.. ..+.+||
T Consensus 102 ~l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 102 SLGTKSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred ccccccccchhhc-C-CEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeee
Confidence 3445566666554 3 35777788999999999854211111111111125777777776554 5558888 7899999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC--CCeEEEEEecCeEEEEECCCC-eeeeEEcCCCCCeEEE
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD--GQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTV 190 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~ 190 (409)
++..+.....+... ...+.+ .-.-.++++.|.+. ...|++++.-+.+++||.+.+ +++..+.....+++++
T Consensus 180 le~~~qiw~aKNvp-nD~L~L-----rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~ 253 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVP-NDRLGL-----RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST 253 (412)
T ss_pred cccceeeeeccCCC-Cccccc-----eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee
Confidence 98874432222111 000000 01225778899887 788999999999999999765 5677787788999999
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeee-eeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV-LMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
... |.++++++|..-|.+..||+| .+..... +.+..+.|+++..+|.+.++++++-|..|+|+|+.+
T Consensus 254 ~l~-p~gn~Iy~gn~~g~l~~FD~r----~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 254 GLT-PSGNFIYTGNTKGQLAKFDLR----GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred eec-CCCcEEEEecccchhheeccc----CceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 999 899999999999999999987 5555555 788899999999999999999999999999999988
No 242
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.66 E-value=2.6e-14 Score=109.28 Aligned_cols=149 Identities=21% Similarity=0.295 Sum_probs=105.1
Q ss_pred EEEEECCCCCEEEEEeC----------CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE--ecCCEEEE
Q 015301 44 YTSQFSNDGSFFVAASQ----------ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA--SICAIVNI 111 (409)
Q Consensus 44 ~~~~~s~~~~~l~t~~~----------d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~~ 111 (409)
..+.|+|+|++|++-.. -+...+|.++............. .++|.+++|+|+++.+|+. ..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~-~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKK-EGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccC-CCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 45778999988765432 13466666644322222222222 3369999999999987655 35679999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe---cCeEEEEECCCCeeeeEEcCCCCCeE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDLQANKCSLRIPAHKSDVN 188 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~v~ 188 (409)
||++.... .... ...+..+.|+|+|++|++++. .|.|.+||.++.+.+.... | ..++
T Consensus 88 yd~~~~~i---~~~~---------------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t 147 (194)
T PF08662_consen 88 YDVKGKKI---FSFG---------------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDAT 147 (194)
T ss_pred EcCcccEe---Eeec---------------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEE
Confidence 99962221 1111 125788999999999999875 4679999999888877665 3 3478
Q ss_pred EEEEeCCCCcEEEEeeC------CCeEEEecc
Q 015301 189 TVCFADETGHLIFSGSD------DSLCKVWDR 214 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~------dg~i~iwd~ 214 (409)
.++|+ |+|++|+++.. |+.++||+.
T Consensus 148 ~~~Ws-PdGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 148 DVEWS-PDGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred EEEEc-CCCCEEEEEEeccceeccccEEEEEe
Confidence 99999 89999998874 677899996
No 243
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.65 E-value=1e-11 Score=105.04 Aligned_cols=284 Identities=15% Similarity=0.192 Sum_probs=167.7
Q ss_pred CCCeEEEEECCCCCEEEEEeC----CCcEEEEEcCCC-eeeeeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEEE
Q 015301 40 NSRVYTSQFSNDGSFFVAASQ----ESNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVD 113 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~----d~~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w~ 113 (409)
......++++|++++|.+... ++.|..|++... ..+...............++++|++++|+++. .+|.|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 345667889999999988866 578999998765 23333322222233567899999999999987 589999999
Q ss_pred cCCC-ccccccceeceeeeeeeecC-CCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCCCe--ee--eEE-cCCCC
Q 015301 114 VGSS-ARESLANVTEIHKGLDFSAD-GDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANK--CS--LRI-PAHKS 185 (409)
Q Consensus 114 ~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~--~~--~~~-~~~~~ 185 (409)
+... ......... .+.+. .+. .........++.++|+++++++... ...|.+|++.... .. ..+ .....
T Consensus 116 l~~~g~l~~~~~~~-~~~g~--g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 116 LDDDGSLGEVVQTV-RHEGS--GPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp ECTTSEEEEEEEEE-ESEEE--ESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred ccCCcccceeeeec-ccCCC--CCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 9874 322221111 01110 111 0112335789999999999888754 4579999987654 21 222 23456
Q ss_pred CeEEEEEeCCCCcEEEEe-eCCCeEEEecccccccCCceeeeeecc------ccceeEEEEcCCCCeEEEEeC-CCcEEE
Q 015301 186 DVNTVCFADETGHLIFSG-SDDSLCKVWDRRCFISKGRANGVLMGH------LEGITFIDSRRDGRYFISNGK-DQTTKL 257 (409)
Q Consensus 186 ~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~-dg~i~i 257 (409)
....++|+ ++++++++. ..++.|.++++................ ......+.++|||++|+++.. .+.|.+
T Consensus 193 GPRh~~f~-pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v 271 (345)
T PF10282_consen 193 GPRHLAFS-PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV 271 (345)
T ss_dssp SEEEEEE--TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred CCcEEEEc-CCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence 67999999 677776555 467889999875111111122222111 125678999999998877664 678999
Q ss_pred eeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-CCe
Q 015301 258 WDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DNS 336 (409)
Q Consensus 258 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~ 336 (409)
|++.... ..+.......... .....+.++|+|++|+++.. ++.
T Consensus 272 f~~d~~~---------------------------------g~l~~~~~~~~~G---~~Pr~~~~s~~g~~l~Va~~~s~~ 315 (345)
T PF10282_consen 272 FDLDPAT---------------------------------GTLTLVQTVPTGG---KFPRHFAFSPDGRYLYVANQDSNT 315 (345)
T ss_dssp EEECTTT---------------------------------TTEEEEEEEEESS---SSEEEEEE-TTSSEEEEEETTTTE
T ss_pred EEEecCC---------------------------------CceEEEEEEeCCC---CCccEEEEeCCCCEEEEEecCCCe
Confidence 9985411 1111111111000 11235578999999998875 578
Q ss_pred EEEEEcc--CCceEEEec-cCCcceeeeEE
Q 015301 337 VYIYDLV--SGAQVAKLD-FHNAPVRDCCW 363 (409)
Q Consensus 337 v~i~d~~--~~~~~~~~~-~~~~~v~~~~~ 363 (409)
|.+|++. +|.+...-. ..-....|+.|
T Consensus 316 v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 316 VSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 9999774 555433322 12234455554
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.65 E-value=2.4e-13 Score=119.30 Aligned_cols=233 Identities=20% Similarity=0.196 Sum_probs=147.0
Q ss_pred CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC---CEEEEEEcCCCccccccceeceeeeeeeecCC
Q 015301 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---AIVNIVDVGSSARESLANVTEIHKGLDFSADG 138 (409)
Q Consensus 62 ~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (409)
..|.++|.+.. ....... +...+...+|+|||++|+.+..+ ..|++||+.+++.......
T Consensus 170 ~~l~~~d~~g~-~~~~l~~---~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~------------- 232 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITR---SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF------------- 232 (417)
T ss_pred ceEEEEcCCCC-CCEEeec---CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-------------
Confidence 35788887644 2333222 23368889999999999987644 4799999987754322111
Q ss_pred CCcceeeEEEEEcCCCCeEEEEE-ec--CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeC-CC--eEEEe
Q 015301 139 DEDEFGIFSVKFSTDGQELVAAG-SD--NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD-DS--LCKVW 212 (409)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~l~~~~-~d--~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~i~iw 212 (409)
...+.+++|+|+|+.|+... .+ ..|++||+.+++.. .+..+........|+ ++++.|+..+. ++ .|.++
T Consensus 233 ---~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s-~dg~~l~~~s~~~g~~~iy~~ 307 (417)
T TIGR02800 233 ---PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWS-PDGKSIAFTSDRGGSPQIYMM 307 (417)
T ss_pred ---CCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEEC-CCCCEEEEEECCCCCceEEEE
Confidence 11356689999999877543 33 36999999877543 344455555677899 78887766553 34 46666
Q ss_pred cccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC---cEEEeeCCCCcccccccccccccccccccccccccc
Q 015301 213 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ---TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYA 289 (409)
Q Consensus 213 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (409)
|+. .+. ...+..+........|+|++++++..+.++ .|.+||+.+..
T Consensus 308 d~~----~~~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~------------------------- 357 (417)
T TIGR02800 308 DAD----GGE-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG------------------------- 357 (417)
T ss_pred ECC----CCC-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC-------------------------
Confidence 653 222 233444455667889999999999888765 78888876521
Q ss_pred eeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC---eEEEEEccCCceEEEeccCCcceeeeEEe
Q 015301 290 RRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN---SVYIYDLVSGAQVAKLDFHNAPVRDCCWH 364 (409)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~v~~~~~s 364 (409)
...+.... ....+.|+|++++|+..+.++ .+++.+. +++....+..+.+.+..++|+
T Consensus 358 ----------~~~l~~~~-------~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 358 ----------ERVLTDTG-------LDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred ----------eEEccCCC-------CCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCcCCCCCC
Confidence 11111110 012457899999888877754 4555554 455556665555566666653
No 245
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=2.9e-12 Score=101.29 Aligned_cols=282 Identities=17% Similarity=0.109 Sum_probs=178.9
Q ss_pred CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec---CCEEEEEEcCC--Cccccccceeceeeeeeee
Q 015301 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI---CAIVNIVDVGS--SARESLANVTEIHKGLDFS 135 (409)
Q Consensus 61 d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~~w~~~~--~~~~~~~~~~~~~~~~~~~ 135 (409)
+.-|++|++++..............+.++-++|+|+++.|.++.. +|.|..|.++. ++..........
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~------- 87 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLP------- 87 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccC-------
Confidence 456999999865444444444455567899999999999988854 46777777765 443322221111
Q ss_pred cCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCC-CeeeeE--EcCCCCC----------eEEEEEeCCCCcEEE
Q 015301 136 ADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQA-NKCSLR--IPAHKSD----------VNTVCFADETGHLIF 201 (409)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~-~~~~~~--~~~~~~~----------v~~~~~~~~~~~~l~ 201 (409)
..+.+.++++++|++++++.. .|.|.++-++. |.+... ...|.+. +....+. |++++|+
T Consensus 88 ------g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t-P~~~~l~ 160 (346)
T COG2706 88 ------GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFT-PDGRYLV 160 (346)
T ss_pred ------CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeC-CCCCEEE
Confidence 113488999999999998876 58899998865 433221 2224444 7788888 8888888
Q ss_pred EeeC-CCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeC-CCcEEEeeCCCCcccccccccccccccc
Q 015301 202 SGSD-DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWD 279 (409)
Q Consensus 202 ~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 279 (409)
+.+- .-.|.+|++....-.......+ ......+.|.|+|++++....++ +++|.+|..........
T Consensus 161 v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~----------- 228 (346)
T COG2706 161 VPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE----------- 228 (346)
T ss_pred EeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE-----------
Confidence 7653 3468999975221111111222 34456788999999998877776 88999999887311110
Q ss_pred cccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-CCeEEEEEccCC--ce--EEEeccC
Q 015301 280 YRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLVSG--AQ--VAKLDFH 354 (409)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v~i~d~~~~--~~--~~~~~~~ 354 (409)
.++....-+..-......-.+..++||++|.++.. ...|.+|.+... ++ +.....+
T Consensus 229 -------------------~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te 289 (346)
T COG2706 229 -------------------ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE 289 (346)
T ss_pred -------------------EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC
Confidence 01111111100111122234568899999998765 357888887643 21 2222334
Q ss_pred CcceeeeEEecCcCeEEeecCC-CeEEEEecCCC
Q 015301 355 NAPVRDCCWHPIYPMLISSSWD-CNIVRWEIPGI 387 (409)
Q Consensus 355 ~~~v~~~~~s~~~~~l~s~~~d-g~i~iw~~~~~ 387 (409)
...-.+..+++++++|+++..| ..|.++..+..
T Consensus 290 g~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 290 GQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 4457889999999988888765 46889988653
No 246
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=2.9e-13 Score=118.17 Aligned_cols=233 Identities=19% Similarity=0.199 Sum_probs=143.0
Q ss_pred cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC---CEEEEEEcCCCccccccceeceeeeeeeecCCC
Q 015301 63 NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---AIVNIVDVGSSARESLANVTEIHKGLDFSADGD 139 (409)
Q Consensus 63 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (409)
.+.++|.+... ...... ....+.+..|+|||+.|+..+.+ ..|.+||+.+++.........
T Consensus 199 ~l~i~d~dG~~-~~~l~~---~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g------------ 262 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLR---SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG------------ 262 (448)
T ss_pred EEEEEeCCCCC-ceEeec---CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC------------
Confidence 56677765542 222222 23368889999999999877543 368889988765432221110
Q ss_pred CcceeeEEEEEcCCCCeEEEE-EecC--eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee-CCCe--EEEec
Q 015301 140 EDEFGIFSVKFSTDGQELVAA-GSDN--FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDSL--CKVWD 213 (409)
Q Consensus 140 ~~~~~v~~~~~~~~~~~l~~~-~~d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~--i~iwd 213 (409)
.....+|+|||+.|+.. +.++ .|+++|+.+++.. .+..+.......+|+ ++++.|+..+ .++. |.++|
T Consensus 263 ----~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wS-pDG~~I~f~s~~~g~~~Iy~~d 336 (448)
T PRK04792 263 ----INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWH-PDGKSLIFTSERGGKPQIYRVN 336 (448)
T ss_pred ----CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEEE
Confidence 23467899999988764 4455 4888899877643 444455566788999 7777766554 3454 44555
Q ss_pred ccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeC-CC--cEEEeeCCCCcccccccccccccccccccccccccce
Q 015301 214 RRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQ--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYAR 290 (409)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (409)
+. .+.. ..+..........+|+|||++|+..+. ++ .|.++|+.+..
T Consensus 337 l~----~g~~-~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~-------------------------- 385 (448)
T PRK04792 337 LA----SGKV-SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA-------------------------- 385 (448)
T ss_pred CC----CCCE-EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC--------------------------
Confidence 42 2332 222222223345789999998887655 34 34556665421
Q ss_pred eccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC-C--eEEEEEccCCceEEEeccCCcceeeeEEec
Q 015301 291 RLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD-N--SVYIYDLVSGAQVAKLDFHNAPVRDCCWHP 365 (409)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g--~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~ 365 (409)
...+.... ...++.|+|||+.|+..+.+ | .+++++. +++....+..+.+.+...+|+|
T Consensus 386 ---------~~~lt~~~-------~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 386 ---------MQVLTSTR-------LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ---------eEEccCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 11111110 01245799999988876654 3 3777786 5666677776677788889987
No 247
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=4.5e-13 Score=117.55 Aligned_cols=234 Identities=18% Similarity=0.201 Sum_probs=145.5
Q ss_pred cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC---CEEEEEEcCCCccccccceeceeeeeeeecCCC
Q 015301 63 NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---AIVNIVDVGSSARESLANVTEIHKGLDFSADGD 139 (409)
Q Consensus 63 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (409)
.|.++|.+.. ....... +...+....|+|||+.|+..+.+ ..|.+|++.+++........
T Consensus 180 ~l~~~d~~g~-~~~~l~~---~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~------------- 242 (430)
T PRK00178 180 TLQRSDYDGA-RAVTLLQ---SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE------------- 242 (430)
T ss_pred EEEEECCCCC-CceEEec---CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC-------------
Confidence 4777787654 2233222 33478899999999999877643 36899999887654332211
Q ss_pred CcceeeEEEEEcCCCCeEEEE-EecC--eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee-CCC--eEEEec
Q 015301 140 EDEFGIFSVKFSTDGQELVAA-GSDN--FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDS--LCKVWD 213 (409)
Q Consensus 140 ~~~~~v~~~~~~~~~~~l~~~-~~d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~iwd 213 (409)
..+...+|+|+|+.|+.. ..++ .|+++|+.+++.. .+..+........|+ ++++.|+..+ .+| .|.++|
T Consensus 243 ---g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~s-pDg~~i~f~s~~~g~~~iy~~d 317 (430)
T PRK00178 243 ---GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWG-KDGRTLYFTSDRGGKPQIYKVN 317 (430)
T ss_pred ---CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEEC-CCCCEEEEEECCCCCceEEEEE
Confidence 124468999999988754 3344 6889999887654 354455566778999 7777665554 344 466666
Q ss_pred ccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC-C--cEEEeeCCCCcccccccccccccccccccccccccce
Q 015301 214 RRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-Q--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYAR 290 (409)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (409)
+. .+.. ..+...........|+|+|+.++..+.+ + .|.++|+.+...
T Consensus 318 ~~----~g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~------------------------- 367 (430)
T PRK00178 318 VN----GGRA-ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV------------------------- 367 (430)
T ss_pred CC----CCCE-EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-------------------------
Confidence 43 3322 2222112233457899999998877653 3 477888766221
Q ss_pred eccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC---CeEEEEEccCCceEEEeccCCcceeeeEEecC
Q 015301 291 RLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD---NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPI 366 (409)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~ 366 (409)
..+.... ....+.|+|||+.++..+.+ ..++++++. +.....+..+.+.+...+|+|-
T Consensus 368 ----------~~lt~~~-------~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 368 ----------RILTDTS-------LDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ----------EEccCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 1111100 01145799999999887654 357777774 4444556556667888888873
No 248
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.63 E-value=3.8e-14 Score=125.80 Aligned_cols=198 Identities=21% Similarity=0.260 Sum_probs=151.8
Q ss_pred eEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCC----eEEEEEeCCCCcEEEEeeCCCeEEEecccccccC
Q 015301 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSD----VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK 220 (409)
Q Consensus 145 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 220 (409)
+....+..+.+.++.++.+..+.+||...+.....+...... ..-+-++ ++.-++++|+.-+.|.+|+.. .
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s-~~~~~i~~gsv~~~iivW~~~----~ 164 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDS-AEELYIASGSVFGEIIVWKPH----E 164 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEecc-CcEEEEEeccccccEEEEecc----c
Confidence 444555557778888999999999999888777666533221 1112233 677789999999999999975 2
Q ss_pred CceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccce
Q 015301 221 GRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL 300 (409)
Q Consensus 221 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (409)
......+.+|.+.|.++.++.||+++++.++|.++++|++.+.+...
T Consensus 165 dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--------------------------------- 211 (967)
T KOG0974|consen 165 DNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--------------------------------- 211 (967)
T ss_pred cCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---------------------------------
Confidence 22223688999999999999999999999999999999999843221
Q ss_pred eeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCC-cceeeeEEecCcCeEEeecCCCeE
Q 015301 301 ATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHN-APVRDCCWHPIYPMLISSSWDCNI 379 (409)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i 379 (409)
...-+|+ .-+|...+.|+ .++++++|.+.++|+. +++.+..+..|. +.|..++..++...++|++.||.+
T Consensus 212 ~~~fgHs------aRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~l 282 (967)
T KOG0974|consen 212 CTGFGHS------ARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTL 282 (967)
T ss_pred ccccccc------ceeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcch
Confidence 1223344 44566677776 8999999999999976 566666888885 479999999998899999999999
Q ss_pred EEEecCCCcc
Q 015301 380 VRWEIPGIGE 389 (409)
Q Consensus 380 ~iw~~~~~~~ 389 (409)
++|++.....
T Consensus 283 k~~~l~~r~~ 292 (967)
T KOG0974|consen 283 KLWDLNGRGL 292 (967)
T ss_pred hhhhhhcccc
Confidence 9999976543
No 249
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.62 E-value=1e-11 Score=102.24 Aligned_cols=278 Identities=12% Similarity=0.054 Sum_probs=167.1
Q ss_pred CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec----------CCEEEEEEcCCCccccccceeceeee
Q 015301 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI----------CAIVNIVDVGSSARESLANVTEIHKG 131 (409)
Q Consensus 62 ~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (409)
++|.+.|.++.+.+........ ...+ ++||++.|.++.. +..|.+||..+.+.............
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~----P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL----PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC----Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 7899999999865554433322 2334 9999999887765 78999999999876544443221000
Q ss_pred eeeecCCCCcceeeEEEEEcCCCCeEEEEE-e-cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeE
Q 015301 132 LDFSADGDEDEFGIFSVKFSTDGQELVAAG-S-DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLC 209 (409)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 209 (409)
. .......++++|||++|++.. . +..|.+.|+.+++.+.++.... ...-...+ ++.++ +-+.||..
T Consensus 102 ~--------~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~-e~~~~--~~~~Dg~~ 169 (352)
T TIGR02658 102 L--------VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTA-NDTFF--MHCRDGSL 169 (352)
T ss_pred h--------ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEec-CCccE--EEeecCce
Confidence 0 011245789999999999876 3 6899999999999998886422 22222222 22222 23345555
Q ss_pred EEecccccccCCcee-ee---eecccccee-EEEEcC-CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccc
Q 015301 210 KVWDRRCFISKGRAN-GV---LMGHLEGIT-FIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWM 283 (409)
Q Consensus 210 ~iwd~~~~~~~~~~~-~~---~~~~~~~v~-~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (409)
....+. ..++.. .. +.....++. .-.|.+ +|+++.+... |.|.+.|+........
T Consensus 170 ~~v~~d---~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~--------------- 230 (352)
T TIGR02658 170 AKVGYG---TKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL--------------- 230 (352)
T ss_pred EEEEec---CCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec---------------
Confidence 443332 111111 11 000000000 003345 7887777666 9999999765321111
Q ss_pred cccccceeccccCccceeeeecccc-eeeeeEEEEeeeecCCCCEEEEEeC----------CCeEEEEEccCCceEEEec
Q 015301 284 EYPSYARRLKHPHDQSLATYKGHSV-LRTLIRCYFSPEYSTAQKYIYTGSS----------DNSVYIYDLVSGAQVAKLD 352 (409)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~----------dg~v~i~d~~~~~~~~~~~ 352 (409)
..+..+..... .........-.+++++++.+++... .+.|.++|..+++.+..+.
T Consensus 231 --------------~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~ 296 (352)
T TIGR02658 231 --------------PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE 296 (352)
T ss_pred --------------ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe
Confidence 00111100000 0000000112578888988887532 2579999999999999987
Q ss_pred cCCcceeeeEEecCcC-eEEeec-CCCeEEEEecCCCccc
Q 015301 353 FHNAPVRDCCWHPIYP-MLISSS-WDCNIVRWEIPGIGEA 390 (409)
Q Consensus 353 ~~~~~v~~~~~s~~~~-~l~s~~-~dg~i~iw~~~~~~~~ 390 (409)
. ...+..++++||++ +|++.. .++.|.+.|..+++..
T Consensus 297 v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 297 L-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred C-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 3 45889999999999 777665 6788999999877543
No 250
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=3.8e-13 Score=115.16 Aligned_cols=287 Identities=10% Similarity=0.113 Sum_probs=195.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee------------eeeeeecccccceEEEEEeCCCCcEEEEEecCC
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK------------IQKDIETKALRWTITDTSLSPDQRFLVYASICA 107 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 107 (409)
.....|++|+....++|+|+.||.++|..+.+... +.....+.+|...|.-+.|+.+.+.|-++..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 45678999999999999999999999999875421 112234568899999999999999999999999
Q ss_pred EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeee-eEEcCCCCC
Q 015301 108 IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCS-LRIPAHKSD 186 (409)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~ 186 (409)
.|.+|-+-.+.......... ..+-|.+++|+.+|..+.....||.|.+=.++..+.- +.+++ ..
T Consensus 94 lIiVWmlykgsW~EEMiNnR-------------nKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~ 158 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNR-------------NKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QL 158 (1189)
T ss_pred eEEEEeeecccHHHHHhhCc-------------CccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--he
Confidence 99999998776432222111 1225999999999999999999999988777644321 11222 22
Q ss_pred eEEEEEeCCCCcEEEEeeCCCeEEEecccccccCC---ceeee----eeccccceeEEEEc--------CCCCeEEEEeC
Q 015301 187 VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG---RANGV----LMGHLEGITFIDSR--------RDGRYFISNGK 251 (409)
Q Consensus 187 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~----~~~~~~~v~~~~~~--------~~~~~l~~~~~ 251 (409)
...+.|+ ++...++.+-..|.+.+||........ .+... +......|..+.|. |+...|+++..
T Consensus 159 l~hv~ws-~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~ 237 (1189)
T KOG2041|consen 159 LAHVLWS-EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA 237 (1189)
T ss_pred ccceeec-ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc
Confidence 3578899 888888888889999999953110000 01000 11111224455553 46678899988
Q ss_pred CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEE
Q 015301 252 DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG 331 (409)
Q Consensus 252 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 331 (409)
.|.+.+..-.+.. .++..-.+ -.+....|+++|..||++
T Consensus 238 nGr~QiMR~eND~---------------------------------~Pvv~dtg--------m~~vgakWnh~G~vLAvc 276 (1189)
T KOG2041|consen 238 NGRMQIMRSENDP---------------------------------EPVVVDTG--------MKIVGAKWNHNGAVLAVC 276 (1189)
T ss_pred CceehhhhhcCCC---------------------------------CCeEEecc--------cEeecceecCCCcEEEEc
Confidence 9988877544411 11111111 112344688899999998
Q ss_pred eCC---------CeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 332 SSD---------NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 332 ~~d---------g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
+.+ +.|.+|. .-|+.+.+++.....|++++|-..|-.++.+ .|+.|++=++.
T Consensus 277 G~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 277 GNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIR 337 (1189)
T ss_pred cCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeec
Confidence 864 3566665 3678888999888999999998776666555 45666654443
No 251
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.60 E-value=1.6e-12 Score=115.72 Aligned_cols=197 Identities=17% Similarity=0.260 Sum_probs=152.7
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccc-cceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccc
Q 015301 43 VYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKAL-RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARES 121 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~ 121 (409)
|....+.-+.+.++.+..+..+.+||...+............ -....-+-++++.-++++|+.-+.|.+|+....+...
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~ 169 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI 169 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc
Confidence 333444556678888888899999998876443332211110 0122334467788899999999999999987332211
Q ss_pred ccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeee-EEcCCCCCeEEEEEeCCCCcEE
Q 015301 122 LANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSL-RIPAHKSDVNTVCFADETGHLI 200 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l 200 (409)
...+|.+.|.++.++.||.++++.+.|.++++|++++.+... ..-+|+..|..++|. ++ .+
T Consensus 170 ---------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~-~n--~i 231 (967)
T KOG0974|consen 170 ---------------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL-PN--RI 231 (967)
T ss_pred ---------------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEec-cc--ee
Confidence 123678899999999999999999999999999999988776 567899999999999 55 89
Q ss_pred EEeeCCCeEEEecccccccCCceeeeeeccc-cceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 201 FSGSDDSLCKVWDRRCFISKGRANGVLMGHL-EGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 201 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
++++.|-+.++|+. .+..+..+.+|. ..+..++..++...+++++.|+.+++||+..
T Consensus 232 ~t~gedctcrvW~~-----~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGV-----NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEeccceEEEEEec-----ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99999999999974 556666777776 4689999999999999999999999999865
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=2.5e-12 Score=111.40 Aligned_cols=242 Identities=10% Similarity=0.069 Sum_probs=143.2
Q ss_pred CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEE---EEecC--CEEEEEEcCCCccccccceeceeeeeeeec
Q 015301 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV---YASIC--AIVNIVDVGSSARESLANVTEIHKGLDFSA 136 (409)
Q Consensus 62 ~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~---~~~~d--g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 136 (409)
..|.+.|.+.+. ...+.. ....+..-+|+|||+.++ +...+ ..|.+.++.+++.........
T Consensus 165 ~~l~~~d~dG~~-~~~lt~---~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g--------- 231 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQ---EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG--------- 231 (428)
T ss_pred ceEEEEcCCCCC-ceEccc---CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC---------
Confidence 357777776552 222222 223566779999997532 33333 368888888776543332211
Q ss_pred CCCCcceeeEEEEEcCCCCeEEEEEe-----cCeEEEEECCCC---eeeeEEcCCCCCeEEEEEeCCCCcEEEEee-CCC
Q 015301 137 DGDEDEFGIFSVKFSTDGQELVAAGS-----DNFIYVYDLQAN---KCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDS 207 (409)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~v~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg 207 (409)
.....+|+|||+.|+..+. +-.+..|++..+ +.......+.......+|+ |+++.|+..+ .+|
T Consensus 232 -------~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS-PDG~~Laf~s~~~g 303 (428)
T PRK01029 232 -------NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS-PDGTRLVFVSNKDG 303 (428)
T ss_pred -------CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC-CCCCEEEEEECCCC
Confidence 2445799999998887653 223444676653 3333333333445678999 8888766554 567
Q ss_pred eEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC---CcEEEeeCCCCccccccccccccccccccccc
Q 015301 208 LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD---QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME 284 (409)
Q Consensus 208 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (409)
...+|.+.... .+.....+..+...+....|+|||+.|+..+.+ ..|.+||+.+...
T Consensus 304 ~~~ly~~~~~~-~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~------------------- 363 (428)
T PRK01029 304 RPRIYIMQIDP-EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD------------------- 363 (428)
T ss_pred CceEEEEECcc-cccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-------------------
Confidence 66666542101 122233344444566788999999988876543 3688999876321
Q ss_pred ccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC---CCeEEEEEccCCceEEEeccCCcceeee
Q 015301 285 YPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS---DNSVYIYDLVSGAQVAKLDFHNAPVRDC 361 (409)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---dg~v~i~d~~~~~~~~~~~~~~~~v~~~ 361 (409)
..+.... .....+.|+|||+.|+.... ...|+++|+.+++...... ..+.+...
T Consensus 364 ----------------~~Lt~~~------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~~~~p 420 (428)
T PRK01029 364 ----------------YQLTTSP------ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GSGEKRFP 420 (428)
T ss_pred ----------------EEccCCC------CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCcccCc
Confidence 1111110 01234679999998876543 3578899998776544333 45567788
Q ss_pred EEecCc
Q 015301 362 CWHPIY 367 (409)
Q Consensus 362 ~~s~~~ 367 (409)
+|+|-.
T Consensus 421 ~Ws~~~ 426 (428)
T PRK01029 421 SWGAFP 426 (428)
T ss_pred eecCCC
Confidence 898753
No 253
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.59 E-value=2e-11 Score=99.83 Aligned_cols=320 Identities=16% Similarity=0.161 Sum_probs=196.9
Q ss_pred eEeeccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEE-----E--eCCCcEEEEEcCCCeeeeeeeecccccce
Q 015301 15 FSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVA-----A--SQESNIKVYNVDKNWKIQKDIETKALRWT 87 (409)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t-----~--~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 87 (409)
.+.+.+-.++..-+....+..+..|-+-|+...|+|+|+.+|. + ...+.+.+.+.+.++.... .-... .
T Consensus 53 IiFt~~DdlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi-TyfGr---~ 128 (668)
T COG4946 53 IIFTCCDDLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI-TYFGR---R 128 (668)
T ss_pred EEEEechHHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE-EEecc---c
Confidence 3444444455555667778899999999999999999998886 2 2235588888888844332 22221 2
Q ss_pred EEE-EEeCCCCcEEEEEecCCEE----EEEEcCCCcc--ccccc---------------------------eeceeee--
Q 015301 88 ITD-TSLSPDQRFLVYASICAIV----NIVDVGSSAR--ESLAN---------------------------VTEIHKG-- 131 (409)
Q Consensus 88 v~~-~~~s~~~~~l~~~~~dg~i----~~w~~~~~~~--~~~~~---------------------------~~~~~~~-- 131 (409)
-+. .-|.|||+.|++...-.-. .+|.+..... ..+.- ......+
T Consensus 129 fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~YkGGtrGkl 208 (668)
T COG4946 129 FTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRGKL 208 (668)
T ss_pred cceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCcccccccCCccceE
Confidence 333 4589999888875422111 1121111100 00000 0000000
Q ss_pred -----------------------------eeeecCCCCcceeeEEEE-------------------EcCCCCeEEEEEec
Q 015301 132 -----------------------------LDFSADGDEDEFGIFSVK-------------------FSTDGQELVAAGSD 163 (409)
Q Consensus 132 -----------------------------~~~~~~~~~~~~~v~~~~-------------------~~~~~~~l~~~~~d 163 (409)
+-|..+. +.-+.+.++. .+.||+.++.. ..
T Consensus 209 Wis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~-eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq-~~ 286 (668)
T COG4946 209 WISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDH-EGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQ-NA 286 (668)
T ss_pred EEEecCCcceeeeeecCCCcCCceEEcceEEEEecc-cCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEe-cC
Confidence 0000000 0011233332 23467776654 46
Q ss_pred CeEEEEECCCCeeeeE-E--cCC-----C---CCeEEEE-EeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccc
Q 015301 164 NFIYVYDLQANKCSLR-I--PAH-----K---SDVNTVC-FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL 231 (409)
Q Consensus 164 ~~i~v~d~~~~~~~~~-~--~~~-----~---~~v~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 231 (409)
|.|+++|.++.+.... + +.. . .+..-+. |++.+|++++..+. |...+.+. ..-.....+|.
T Consensus 287 GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~------~~~~~iqv~~~ 359 (668)
T COG4946 287 GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRP------WDGYSIQVGKK 359 (668)
T ss_pred CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECC------CCCeeEEcCCC
Confidence 8899999877653321 1 100 0 1111122 44567889988875 66777663 22222334577
Q ss_pred cceeEEEEcCCCCeEEEEeCCC-cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeeccccee
Q 015301 232 EGITFIDSRRDGRYFISNGKDQ-TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR 310 (409)
Q Consensus 232 ~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (409)
+.|.-..+..+++-++.|..|| .+-++|.++.+ +..+...
T Consensus 360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-----------------------------------~kr~e~~---- 400 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-----------------------------------VKRIEKD---- 400 (668)
T ss_pred CceEEEEEccCCcceEEeccCCceEEEEecCCce-----------------------------------EEEeeCC----
Confidence 7788888888888899999998 89999988732 2222222
Q ss_pred eeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCC----eEEEEecCC
Q 015301 311 TLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC----NIVRWEIPG 386 (409)
Q Consensus 311 ~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg----~i~iw~~~~ 386 (409)
...++++..+++|++++++.....+.+.|+.+++....-+...+-|+.+.|||+++++|-+=-+| .|+++|+..
T Consensus 401 --lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 401 --LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred --ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 24567778999999999999999999999999998776677788999999999999999875554 688999877
Q ss_pred Cc
Q 015301 387 IG 388 (409)
Q Consensus 387 ~~ 388 (409)
++
T Consensus 479 ~K 480 (668)
T COG4946 479 GK 480 (668)
T ss_pred Ce
Confidence 54
No 254
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.8e-13 Score=112.80 Aligned_cols=254 Identities=16% Similarity=0.167 Sum_probs=168.9
Q ss_pred cccceEEEEEeCCCCcEEE-EEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE
Q 015301 83 ALRWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~-~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (409)
.+...-+.|..+|||+|+. +|...-.|++||+.+-........... .|.-.-.+.|-..++.-.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae---------------~V~feiLsDD~SK~v~L~ 113 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAE---------------VVDFEILSDDYSKSVFLQ 113 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccccc---------------ceeEEEeccchhhheEee
Confidence 3445678899999999865 566788999999987654332222111 233334444544555556
Q ss_pred ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC
Q 015301 162 SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR 241 (409)
Q Consensus 162 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 241 (409)
.|..|.+...-.......++ ..-.+++++.++..+++.|+. ..|+-+++ ..+..+..+....+.++++..++
T Consensus 114 ~DR~IefHak~G~hy~~RIP---~~GRDm~y~~~scDly~~gsg-~evYRlNL----EqGrfL~P~~~~~~~lN~v~in~ 185 (703)
T KOG2321|consen 114 NDRTIEFHAKYGRHYRTRIP---KFGRDMKYHKPSCDLYLVGSG-SEVYRLNL----EQGRFLNPFETDSGELNVVSINE 185 (703)
T ss_pred cCceeeehhhcCeeeeeecC---cCCccccccCCCccEEEeecC-cceEEEEc----cccccccccccccccceeeeecC
Confidence 67777655432211112222 334678888666666666554 45666674 48888888888889999999999
Q ss_pred CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeee
Q 015301 242 DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY 321 (409)
Q Consensus 242 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (409)
...+|++|+.+|.|..||.+........... .....+.. ......+.++.|
T Consensus 186 ~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~----------------------------~~v~s~pg-~~~~~svTal~F 236 (703)
T KOG2321|consen 186 EHGLLACGTEDGVVEFWDPRDKSRVGTLDAA----------------------------SSVNSHPG-GDAAPSVTALKF 236 (703)
T ss_pred ccceEEecccCceEEEecchhhhhheeeecc----------------------------cccCCCcc-ccccCcceEEEe
Confidence 9999999999999999999874432222110 00111111 111233567789
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCceEEEec-cCCcceeeeEEecC--cCeEEeecCCCeEEEEecCCCcc
Q 015301 322 STAQKYIYTGSSDNSVYIYDLVSGAQVAKLD-FHNAPVRDCCWHPI--YPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 322 s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~v~~~~~s~~--~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
+.+|-.+++|+.+|.|.|||+++.+++..-. +..-+|..+.|.+. ...|+|.. ...++|||-..++.
T Consensus 237 ~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 237 RDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKP 306 (703)
T ss_pred cCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCc
Confidence 8899999999999999999999998876553 23458999999776 34677663 46899999887654
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.59 E-value=9.2e-13 Score=110.19 Aligned_cols=194 Identities=17% Similarity=0.206 Sum_probs=153.5
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEe------CC--------------CCcEEEEEecCCE
Q 015301 49 SNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSL------SP--------------DQRFLVYASICAI 108 (409)
Q Consensus 49 s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~------s~--------------~~~~l~~~~~dg~ 108 (409)
.|-..++|....||.+++|+...++............+..++..| +| +...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 455688999999999999999988555444433333444555555 22 3346778888999
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeE
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVN 188 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~ 188 (409)
|.+|++..++...... ...|.++|.++.++.+-..|.+++.|+.+..|+....+...........+.
T Consensus 82 v~~ys~~~g~it~~~s-------------t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~ 148 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLS-------------TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVS 148 (541)
T ss_pred EEEEEecCCeEEEEEe-------------cCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccc
Confidence 9999998887543322 235677899999999999999999999999999999999999998899999
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC-----CCeEEEEe-CCCcEEEeeCCC
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD-----GRYFISNG-KDQTTKLWDIRK 262 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~-~dg~i~iwd~~~ 262 (409)
+++++ +++..+++++ +.|++||+ +..+.+..+.+|.++|+++.|..+ |.+++++. .+..+.+|-++.
T Consensus 149 sl~is-~D~~~l~~as--~~ik~~~~----~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 149 SLCIS-PDGKILLTAS--RQIKVLDI----ETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eEEEc-CCCCEEEecc--ceEEEEEc----cCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99999 8899999887 68999996 489999999999999999999776 66666543 355677887655
No 256
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.58 E-value=2.3e-12 Score=113.03 Aligned_cols=193 Identities=18% Similarity=0.109 Sum_probs=125.2
Q ss_pred eeEEEEEcCCCCeEEEEEec---CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEE-EeeCCC--eEEEeccccc
Q 015301 144 GIFSVKFSTDGQELVAAGSD---NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIF-SGSDDS--LCKVWDRRCF 217 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg--~i~iwd~~~~ 217 (409)
.+...+|+|+|++|+.+..+ ..|++||+.+++... +..+...+.+++|+ ++++.|+ +.+.++ .|++||+.
T Consensus 191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~s-pDg~~l~~~~~~~~~~~i~~~d~~-- 266 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFS-PDGSKLAVSLSKDGNPDIYVMDLD-- 266 (417)
T ss_pred ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEEC-CCCCEEEEEECCCCCccEEEEECC--
Confidence 47788999999999887654 479999998886543 33355667788999 7777665 455554 47788864
Q ss_pred ccCCceeeeeeccccceeEEEEcCCCCeEEEEeC-CC--cEEEeeCCCCcccccccccccccccccccccccccceeccc
Q 015301 218 ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQ--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 294 (409)
Q Consensus 218 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (409)
.+ ....+..+........|+|+|+.|+..+. ++ .|.++|+.+..
T Consensus 267 --~~-~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~------------------------------ 313 (417)
T TIGR02800 267 --GK-QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE------------------------------ 313 (417)
T ss_pred --CC-CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC------------------------------
Confidence 22 23333344444556789999998876654 33 46666665421
Q ss_pred cCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC---eEEEEEccCCceEEEeccCCcceeeeEEecCcCeEE
Q 015301 295 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN---SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLI 371 (409)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 371 (409)
...+..+. .....+.++|+|++|+.++.++ .|.+||+.++.. ..+... .......|+||+++|+
T Consensus 314 -----~~~l~~~~------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~ 380 (417)
T TIGR02800 314 -----VRRLTFRG------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMIL 380 (417)
T ss_pred -----EEEeecCC------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEE
Confidence 11111111 1123567899999999988776 899999987654 333322 2345678999999887
Q ss_pred eecCCC---eEEEEecCC
Q 015301 372 SSSWDC---NIVRWEIPG 386 (409)
Q Consensus 372 s~~~dg---~i~iw~~~~ 386 (409)
..+.++ .+++.+...
T Consensus 381 ~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 381 YATTRGGRGVLGLVSTDG 398 (417)
T ss_pred EEEeCCCcEEEEEEECCC
Confidence 766553 455666544
No 257
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=3.3e-12 Score=112.11 Aligned_cols=203 Identities=15% Similarity=0.119 Sum_probs=130.1
Q ss_pred CCCceeecCCCCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE-ecC
Q 015301 31 NGPWKVDGMNSRVYTSQFSNDGSFFVAASQE---SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SIC 106 (409)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d 106 (409)
.....+..+...+....|||||+.|+..+.+ ..|.+|+++++.. .......+ .+....|+|||+.|+.. ..+
T Consensus 189 ~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-~~l~~~~g---~~~~~~~SpDG~~la~~~~~~ 264 (430)
T PRK00178 189 ARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-EQITNFEG---LNGAPAWSPDGSKLAFVLSKD 264 (430)
T ss_pred CCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-EEccCCCC---CcCCeEECCCCCEEEEEEccC
Confidence 4456677888899999999999999876643 3689999988743 22222222 45568999999988754 444
Q ss_pred C--EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-c--CeEEEEECCCCeeeeEEc
Q 015301 107 A--IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-D--NFIYVYDLQANKCSLRIP 181 (409)
Q Consensus 107 g--~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~v~d~~~~~~~~~~~ 181 (409)
| .|.+||+.+++....... ........|+|+|+.|+..+. + ..|+++|+.+++......
T Consensus 265 g~~~Iy~~d~~~~~~~~lt~~----------------~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~ 328 (430)
T PRK00178 265 GNPEIYVMDLASRQLSRVTNH----------------PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF 328 (430)
T ss_pred CCceEEEEECCCCCeEEcccC----------------CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 4 688889987754322211 112455789999998877664 2 368888888776443222
Q ss_pred CCCCCeEEEEEeCCCCcEEEEeeCC-C--eEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC-C--cE
Q 015301 182 AHKSDVNTVCFADETGHLIFSGSDD-S--LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-Q--TT 255 (409)
Q Consensus 182 ~~~~~v~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i 255 (409)
.........|+ ++++.|+..+.+ + .|.++|+. .+.. ..+.. ........|+|+|+.++..+.+ + .+
T Consensus 329 -~~~~~~~~~~S-pdg~~i~~~~~~~~~~~l~~~dl~----tg~~-~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l 400 (430)
T PRK00178 329 -VGNYNARPRLS-ADGKTLVMVHRQDGNFHVAAQDLQ----RGSV-RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVL 400 (430)
T ss_pred -CCCCccceEEC-CCCCEEEEEEccCCceEEEEEECC----CCCE-EEccC-CCCCCCceECCCCCEEEEEEecCCceEE
Confidence 22333457898 788888776543 3 47778864 2222 22221 1222356899999988876653 3 45
Q ss_pred EEeeCC
Q 015301 256 KLWDIR 261 (409)
Q Consensus 256 ~iwd~~ 261 (409)
.++++.
T Consensus 401 ~~~~~~ 406 (430)
T PRK00178 401 MLVSIN 406 (430)
T ss_pred EEEECC
Confidence 566654
No 258
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.57 E-value=3.4e-14 Score=132.77 Aligned_cols=221 Identities=16% Similarity=0.205 Sum_probs=166.1
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeE
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 166 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 166 (409)
.|.++.=+|...+.++|+.||.+++|....+........... ..|+.+.|+.+|+.+..+..||.+
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--------------s~vtr~~f~~qGnk~~i~d~dg~l 2275 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--------------SRVTRSRFNHQGNKFGIVDGDGDL 2275 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--------------chhhhhhhcccCCceeeeccCCce
Confidence 588888899999999999999999999987765444333221 369999999999999999999999
Q ss_pred EEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee---CCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC
Q 015301 167 YVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS---DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG 243 (409)
Q Consensus 167 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 243 (409)
.+|... .++....+.|.....++.|. . ..+++++ .++.+.+||.- ..+........|.+.++++++.|..
T Consensus 2276 ~l~q~~-pk~~~s~qchnk~~~Df~Fi-~--s~~~tag~s~d~~n~~lwDtl---~~~~~s~v~~~H~~gaT~l~~~P~~ 2348 (2439)
T KOG1064|consen 2276 SLWQAS-PKPYTSWQCHNKALSDFRFI-G--SLLATAGRSSDNRNVCLWDTL---LPPMNSLVHTCHDGGATVLAYAPKH 2348 (2439)
T ss_pred eecccC-CcceeccccCCccccceeee-e--hhhhccccCCCCCcccchhcc---cCcccceeeeecCCCceEEEEcCcc
Confidence 999986 66777788999999999998 3 6677754 57889999964 2222223337899999999999999
Q ss_pred CeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC
Q 015301 244 RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST 323 (409)
Q Consensus 244 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 323 (409)
+.|++|+.+|.|++||++.. +.++.+.. +.
T Consensus 2349 qllisggr~G~v~l~D~rqr----------------------------------ql~h~~~~---------------~~- 2378 (2439)
T KOG1064|consen 2349 QLLISGGRKGEVCLFDIRQR----------------------------------QLRHTFQA---------------LD- 2378 (2439)
T ss_pred eEEEecCCcCcEEEeehHHH----------------------------------HHHHHhhh---------------hh-
Confidence 99999999999999999872 23333332 11
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceEEEecc---CCcc--eeeeEEe-cCcCeEEeecCCCe
Q 015301 324 AQKYIYTGSSDNSVYIYDLVSGAQVAKLDF---HNAP--VRDCCWH-PIYPMLISSSWDCN 378 (409)
Q Consensus 324 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~---~~~~--v~~~~~s-~~~~~l~s~~~dg~ 378 (409)
...++++|+..|.++||++.....+.++.. |.+- ....... -....|++|+.||+
T Consensus 2379 ~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2379 TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeeccCceEEEecCCCC
Confidence 257899999999999999988877777652 2211 1111111 12346777777764
No 259
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.56 E-value=5e-13 Score=104.35 Aligned_cols=274 Identities=16% Similarity=0.241 Sum_probs=172.9
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceecee----eeeeeecCCCCcceeeEEEEEcCCC--CeEEEE
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIH----KGLDFSADGDEDEFGIFSVKFSTDG--QELVAA 160 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~ 160 (409)
-|.++.|...|.+|++|..+|.|.++.-...... ........ ..+.+... -.-...|..+.|.+++ ..++..
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqshepEFDYLkS-leieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSHEPEFDYLKS-LEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeeccccccc-ceeeeeeeeccCcccchhhh-hhhhhhhhhceecCCCCccEEEEe
Confidence 6899999999999999999999999865433221 11111000 00000000 0123358899999865 457777
Q ss_pred EecCeEEEEECCCCeeee-----------------------------------EE-cCCCCCeEEEEEeCCCCcEEEEee
Q 015301 161 GSDNFIYVYDLQANKCSL-----------------------------------RI-PAHKSDVNTVCFADETGHLIFSGS 204 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~~~-----------------------------------~~-~~~~~~v~~~~~~~~~~~~l~~~~ 204 (409)
+.|.+|++|-+....... .+ .+|+..|.++.++ .+...++++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N-sD~Et~lSA- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN-SDKETFLSA- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec-CccceEeec-
Confidence 889999999875321100 01 2688889999999 788777775
Q ss_pred CCCeEEEecccccccCCceeee----eeccccceeEEEEcCC-CCeEEEEeCCCcEEEeeCCCCcccccccccccccccc
Q 015301 205 DDSLCKVWDRRCFISKGRANGV----LMGHLEGITFIDSRRD-GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWD 279 (409)
Q Consensus 205 ~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 279 (409)
.|=.|-+|++.........+-. +..-..-|++..|+|. .+.++-.+..|+|++-|++....--..
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h---------- 252 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH---------- 252 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch----------
Confidence 5678999997632222222111 1122356888899995 567788888999999999852110000
Q ss_pred cccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEc-cCCceEEEeccCCc--
Q 015301 280 YRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL-VSGAQVAKLDFHNA-- 356 (409)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~-~~~~~~~~~~~~~~-- 356 (409)
...+..+... ........++..+..+.|+++|+++++-+. -+|++||+ ...+++.+++.|..
T Consensus 253 ---------sKlfEepedp-----~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr 317 (433)
T KOG1354|consen 253 ---------SKLFEEPEDP-----SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLR 317 (433)
T ss_pred ---------hhhhccccCC-----cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHH
Confidence 0000000000 001111233345556789999999998643 57999999 45677777766532
Q ss_pred ----------ce---eeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 357 ----------PV---RDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 357 ----------~v---~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
.| ..++|+.++.+++||+....++++++..+..
T Consensus 318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 22 3478999999999999999999999765543
No 260
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.56 E-value=1.5e-12 Score=99.53 Aligned_cols=204 Identities=17% Similarity=0.169 Sum_probs=138.9
Q ss_pred CCeEEEEECC---CCC-EEEEEeCCCcEEEEEcCCCeeeeeeeecccccc---eEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 41 SRVYTSQFSN---DGS-FFVAASQESNIKVYNVDKNWKIQKDIETKALRW---TITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 41 ~~v~~~~~s~---~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
..+..+.|+- +|. .|+-+-.+|.|.++..+..+....+.......- ...++.|++.+..++++-.+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 4455666642 455 456677789999998775544333332222211 245778999999999999999988655
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECC-CCeeeeE-EcCCCCCeEEE
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQ-ANKCSLR-IPAHKSDVNTV 190 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~-~~~~~~~-~~~~~~~v~~~ 190 (409)
.......... ..+.|..+++.+.|+. +.+.+.+|+.|+.+..||++ .++.+.. .+.|...|.++
T Consensus 150 ~t~~~le~vq-------------~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI 216 (339)
T KOG0280|consen 150 ETEMVLEKVQ-------------TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSI 216 (339)
T ss_pred cceeeeeecc-------------cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEE
Confidence 5444332211 1235666888899986 45678999999999999998 3344433 46699999999
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC--CeEEEEeCCCcEEEeeCCC
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG--RYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~ 262 (409)
.-+||.+.++++|+.|-.|++||.|. -++++..- .-.+.|..+..+|.- ..|+++-.+| .+|-+...
T Consensus 217 ~ss~~~~~~I~TGsYDe~i~~~DtRn---m~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~ 285 (339)
T KOG0280|consen 217 YSSPPKPTYIATGSYDECIRVLDTRN---MGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSD 285 (339)
T ss_pred ecCCCCCceEEEeccccceeeeehhc---ccCccccC-ccccceEEEEecchhhhHHHHHHHhcC-ceEEEecc
Confidence 99999999999999999999999873 23333322 234789999999853 2344443444 67777665
No 261
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=5.1e-12 Score=110.40 Aligned_cols=202 Identities=16% Similarity=0.109 Sum_probs=125.0
Q ss_pred CCceeecCCCCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE-ecCC
Q 015301 32 GPWKVDGMNSRVYTSQFSNDGSFFVAASQE---SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICA 107 (409)
Q Consensus 32 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg 107 (409)
....+..+...+.+..|||||+.|+..+.+ ..|++||+.+++. .......+ .....+|+|||+.|+.. +.+|
T Consensus 209 ~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-~~lt~~~g---~~~~~~wSPDG~~La~~~~~~g 284 (448)
T PRK04792 209 NEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-EKVTSFPG---INGAPRFSPDGKKLALVLSKDG 284 (448)
T ss_pred CceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-EEecCCCC---CcCCeeECCCCCEEEEEEeCCC
Confidence 345667778889999999999999876543 2588899887743 22222222 34568999999988764 4555
Q ss_pred --EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-c--CeEEEEECCCCeeeeEEcC
Q 015301 108 --IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-D--NFIYVYDLQANKCSLRIPA 182 (409)
Q Consensus 108 --~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~v~d~~~~~~~~~~~~ 182 (409)
.|.++|+.+++....... .......+|+|||+.|+..+. + ..|+++|+.+++... +..
T Consensus 285 ~~~Iy~~dl~tg~~~~lt~~----------------~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~ 347 (448)
T PRK04792 285 QPEIYVVDIATKALTRITRH----------------RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTF 347 (448)
T ss_pred CeEEEEEECCCCCeEECccC----------------CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Eec
Confidence 477788877654322211 112566789999998877654 2 357778887776543 222
Q ss_pred CCCCeEEEEEeCCCCcEEEEeeC-CCe--EEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC-Cc--EE
Q 015301 183 HKSDVNTVCFADETGHLIFSGSD-DSL--CKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-QT--TK 256 (409)
Q Consensus 183 ~~~~v~~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~--i~ 256 (409)
........+|+ ++++.|+..+. ++. |.++|+. .+.. ..+... .......|+|+|+.|+....+ +. +.
T Consensus 348 ~g~~~~~~~~S-pDG~~l~~~~~~~g~~~I~~~dl~----~g~~-~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 348 EGEQNLGGSIT-PDGRSMIMVNRTNGKFNIARQDLE----TGAM-QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred CCCCCcCeeEC-CCCCEEEEEEecCCceEEEEEECC----CCCe-EEccCC-CCCCCceECCCCCEEEEEEecCCceEEE
Confidence 22233457898 78877776554 444 4445643 2322 222221 122345799999988776543 33 55
Q ss_pred EeeCC
Q 015301 257 LWDIR 261 (409)
Q Consensus 257 iwd~~ 261 (409)
+++..
T Consensus 421 ~~~~~ 425 (448)
T PRK04792 421 AVSID 425 (448)
T ss_pred EEECC
Confidence 66653
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=8.7e-12 Score=108.06 Aligned_cols=211 Identities=15% Similarity=0.106 Sum_probs=127.3
Q ss_pred cCCCceeecCCCCeEEEEECCCCCEEE---EEeCCC--cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe
Q 015301 30 VNGPWKVDGMNSRVYTSQFSNDGSFFV---AASQES--NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS 104 (409)
Q Consensus 30 ~~~~~~l~~h~~~v~~~~~s~~~~~l~---t~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 104 (409)
...+..+......+..-+|||||+.++ +...+| .|.+.++.+++. ..+....+ .....+|+|||+.|+..+
T Consensus 174 G~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-~~lt~~~g---~~~~p~wSPDG~~Laf~s 249 (428)
T PRK01029 174 GQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-KKILALQG---NQLMPTFSPRKKLLAFIS 249 (428)
T ss_pred CCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-eEeecCCC---CccceEECCCCCEEEEEE
Confidence 344556766777788899999997532 443343 577778877643 23333333 355689999999988765
Q ss_pred c-CC----EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCe--EEEEECCC-Ce
Q 015301 105 I-CA----IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNF--IYVYDLQA-NK 175 (409)
Q Consensus 105 ~-dg----~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--i~v~d~~~-~~ 175 (409)
. +| .+..|++..+.......+... ........+|+|||+.|+..+. +|. |+++++.. +.
T Consensus 250 ~~~g~~di~~~~~~~~~g~~g~~~~lt~~------------~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~ 317 (428)
T PRK01029 250 DRYGNPDLFIQSFSLETGAIGKPRRLLNE------------AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ 317 (428)
T ss_pred CCCCCcceeEEEeecccCCCCcceEeecC------------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc
Confidence 3 22 344466654321111111100 0012356799999998887663 554 55555532 23
Q ss_pred eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCC---CeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeC-
Q 015301 176 CSLRIPAHKSDVNTVCFADETGHLIFSGSDD---SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK- 251 (409)
Q Consensus 176 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 251 (409)
....+..+...+....|+ |+++.|+..+.+ ..|.+||+. .+.. ..+......+....|+|||+.|+....
T Consensus 318 ~~~~lt~~~~~~~~p~wS-PDG~~Laf~~~~~g~~~I~v~dl~----~g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 318 SPRLLTKKYRNSSCPAWS-PDGKKIAFCSVIKGVRQICVYDLA----TGRD-YQLTTSPENKESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred ceEEeccCCCCccceeEC-CCCCEEEEEEcCCCCcEEEEEECC----CCCe-EEccCCCCCccceEECCCCCEEEEEECC
Confidence 344454455667889999 888888765543 368899964 3333 233333345677899999998875443
Q ss_pred --CCcEEEeeCCC
Q 015301 252 --DQTTKLWDIRK 262 (409)
Q Consensus 252 --dg~i~iwd~~~ 262 (409)
...|.++|+..
T Consensus 392 ~g~~~L~~vdl~~ 404 (428)
T PRK01029 392 SNESELYLISLIT 404 (428)
T ss_pred CCCceEEEEECCC
Confidence 34677888765
No 263
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.54 E-value=7.3e-14 Score=130.67 Aligned_cols=193 Identities=10% Similarity=0.190 Sum_probs=148.0
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
..+..|-..|.++.=+|...+.+||+.||.|++|....+..+........ ..|+.+.|+.+|+.+..+..||.+.+|.
T Consensus 2202 ~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2202 VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--chhhhhhhcccCCceeeeccCCceeecc
Confidence 35556668889999999999999999999999999988877665544433 5899999999999999999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe---cCeEEEEECCCC--e-eeeEEcCCCCCe
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDLQAN--K-CSLRIPAHKSDV 187 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~--~-~~~~~~~~~~~v 187 (409)
....-. .. ...|......+.|-. ..+++++. ++.+.+||.--. . .+. ..|.+.+
T Consensus 2280 ~~pk~~----~s------------~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~ga 2339 (2439)
T KOG1064|consen 2280 ASPKPY----TS------------WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGA 2339 (2439)
T ss_pred cCCcce----ec------------cccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCc
Confidence 872111 11 123444577777754 45666654 689999996422 2 222 7899999
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
+++++. |...+|++|+.+|.|++||+| ..+..+.+.. +. ...++++++..|.++||++...
T Consensus 2340 T~l~~~-P~~qllisggr~G~v~l~D~r----qrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2340 TVLAYA-PKHQLLISGGRKGEVCLFDIR----QRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred eEEEEc-CcceEEEecCCcCcEEEeehH----HHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence 999999 889999999999999999987 4444443332 34 5678999999999999999874
No 264
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1.7e-11 Score=102.22 Aligned_cols=293 Identities=18% Similarity=0.249 Sum_probs=179.8
Q ss_pred ceeeEEecCceeEeeccceEEEEeeecC-------------CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYLPVN-------------GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVD 70 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~-------------~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~ 70 (409)
-.+|.|||-|.|+.+-....++.-.+.. ....+..-...=++..|++|..+.|=- ..+.+.+|+..
T Consensus 76 ~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~ 154 (566)
T KOG2315|consen 76 TYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLG 154 (566)
T ss_pred eeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhh-hcceEEEEecC
Confidence 4578899999987764433222211111 111111111111688999988754432 24579999998
Q ss_pred CCeeeeeeeecccccceEEEEEeCCCC--cEEEE-----EecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcce
Q 015301 71 KNWKIQKDIETKALRWTITDTSLSPDQ--RFLVY-----ASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEF 143 (409)
Q Consensus 71 ~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~-----~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (409)
+...+...+ |...|+.+.+||.+ ..+|+ .+.-+.+++|...................
T Consensus 155 ~f~~~~~kl----~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFka------------ 218 (566)
T KOG2315|consen 155 SFKTIQHKL----SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKA------------ 218 (566)
T ss_pred Cccceeeee----eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccc------------
Confidence 754433333 34469999999873 34443 24566899998874333222222221111
Q ss_pred eeEEEEEcCCCCeE-EEEEe-----------cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEE--eeCCCeE
Q 015301 144 GIFSVKFSTDGQEL-VAAGS-----------DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFS--GSDDSLC 209 (409)
Q Consensus 144 ~v~~~~~~~~~~~l-~~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i 209 (409)
.=..+.|++-|.-| +.++. ..++++++++.......+. ..++|.++.|+ +++..+++ |-.-..+
T Consensus 219 dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~-~s~~EF~VvyGfMPAkv 296 (566)
T KOG2315|consen 219 DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWS-PSGREFAVVYGFMPAKV 296 (566)
T ss_pred ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEEC-CCCCEEEEEEecccceE
Confidence 23457788766533 22222 2368888887444444443 47999999999 67765554 3456789
Q ss_pred EEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeC---CCcEEEeeCCCCccccccccccccccccccccccc
Q 015301 210 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK---DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYP 286 (409)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (409)
.|||++ +..+..+ ..++-+++-|+|.|++++.++- .|.|.+||+.+.+.
T Consensus 297 tifnlr-----~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~--------------------- 348 (566)
T KOG2315|consen 297 TIFNLR-----GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL--------------------- 348 (566)
T ss_pred EEEcCC-----CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh---------------------
Confidence 999974 4454444 4577788999999999988876 47999999988332
Q ss_pred ccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC------CCeEEEEEccCCceEEEeccCCcceee
Q 015301 287 SYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS------DNSVYIYDLVSGAQVAKLDFHNAPVRD 360 (409)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~~~~~v~~ 360 (409)
+..+.... ..-.+|+|||+++++++. |+.++||+. +|..+....-. .....
T Consensus 349 -------------i~~~~a~~--------tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~-sEL~q 405 (566)
T KOG2315|consen 349 -------------IAKFKAAN--------TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFK-SELLQ 405 (566)
T ss_pred -------------ccccccCC--------ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhh-HhHhh
Confidence 33332222 112369999999999875 678999997 67666544322 25677
Q ss_pred eEEecC
Q 015301 361 CCWHPI 366 (409)
Q Consensus 361 ~~~s~~ 366 (409)
+.|-|-
T Consensus 406 v~W~P~ 411 (566)
T KOG2315|consen 406 VEWRPF 411 (566)
T ss_pred eeeeec
Confidence 777753
No 265
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.54 E-value=1.6e-12 Score=108.74 Aligned_cols=189 Identities=14% Similarity=0.154 Sum_probs=145.7
Q ss_pred CCCCeEEEEEecCeEEEEECCCCeeeeEEcC---CCCCeEEEEEe-------------------CCCCcEEEEeeCCCeE
Q 015301 152 TDGQELVAAGSDNFIYVYDLQANKCSLRIPA---HKSDVNTVCFA-------------------DETGHLIFSGSDDSLC 209 (409)
Q Consensus 152 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~v~~~~~~-------------------~~~~~~l~~~~~dg~i 209 (409)
|...++|....||.+++||...++..+.+.. -.+..++.+|. ..+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567889999999999999999987776632 23344444443 1234578888899999
Q ss_pred EEecccccccCCceeeeee--ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccc
Q 015301 210 KVWDRRCFISKGRANGVLM--GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPS 287 (409)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (409)
.+|++. .++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+...
T Consensus 83 ~~ys~~----~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~------------------------- 133 (541)
T KOG4547|consen 83 LLYSVA----GGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE------------------------- 133 (541)
T ss_pred EEEEec----CCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc-------------------------
Confidence 999964 555555544 6899999999999999999999999999999877
Q ss_pred cceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecC-
Q 015301 288 YARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPI- 366 (409)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~- 366 (409)
...++.+.... ....+.+++|||+.+++++ +.|.+||+++++.+.++.+|.++|.+++|-.+
T Consensus 134 ---------~~~~~~~~~~~------~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~ 196 (541)
T KOG4547|consen 134 ---------KVIIRIWKEQK------PLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLI 196 (541)
T ss_pred ---------ceeeeeeccCC------CccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEec
Confidence 34444454444 2234567899999999986 57999999999999999999999999999877
Q ss_pred ----cCeE-EeecCCCeEEEEecCC
Q 015301 367 ----YPML-ISSSWDCNIVRWEIPG 386 (409)
Q Consensus 367 ----~~~l-~s~~~dg~i~iw~~~~ 386 (409)
|.++ .+...+..+.+|-+..
T Consensus 197 ~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 197 DGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cccccceeeeccccccceeEEEEEc
Confidence 5544 4455667788898765
No 266
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=6.3e-11 Score=93.85 Aligned_cols=247 Identities=13% Similarity=0.175 Sum_probs=159.5
Q ss_pred cceeeEEecCceeEeeccce----EEEEee--ecCCCceeecC----CCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCC
Q 015301 3 VGREVNYSGRGRFSAADSCH----VLSRYL--PVNGPWKVDGM----NSRVYTSQFSNDGSFFVAASQ-ESNIKVYNVDK 71 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~----~~~~~~--~~~~~~~l~~h----~~~v~~~~~s~~~~~l~t~~~-d~~i~vw~~~~ 71 (409)
++.-|+++|+++.+.+.... .+..+. +.....++.++ ..+-+.++++++|++|+++.. -|.|.++-+..
T Consensus 41 nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~ 120 (346)
T COG2706 41 NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQA 120 (346)
T ss_pred CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEccc
Confidence 45678999999765553322 222222 22133333322 133388999999999999875 47899999976
Q ss_pred Ceeeeeeeecccccce----------EEEEEeCCCCcEEEEEec-CCEEEEEEcCCCccccccceeceeeeeeeecCCCC
Q 015301 72 NWKIQKDIETKALRWT----------ITDTSLSPDQRFLVYASI-CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDE 140 (409)
Q Consensus 72 ~~~~~~~~~~~~~~~~----------v~~~~~s~~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (409)
...+........|.+. +....+.|++++|++... ...|.+|++..+.........- .
T Consensus 121 dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v------------~ 188 (346)
T COG2706 121 DGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV------------K 188 (346)
T ss_pred CCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc------------C
Confidence 4344433333333333 888999999999998863 3468999999776543332221 1
Q ss_pred cceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCCC--e--eeeEE---c---CCCCCeEEEEEeCCCCcEEEEeeC-CCe
Q 015301 141 DEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQAN--K--CSLRI---P---AHKSDVNTVCFADETGHLIFSGSD-DSL 208 (409)
Q Consensus 141 ~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~--~--~~~~~---~---~~~~~v~~~~~~~~~~~~l~~~~~-dg~ 208 (409)
...+...+.|+|++++..+.++ +++|.+|..... + .++.+ + .......++..+ ++|++|+++.. ...
T Consensus 189 ~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis-~dGrFLYasNRg~ds 267 (346)
T COG2706 189 PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS-PDGRFLYASNRGHDS 267 (346)
T ss_pred CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC-CCCCEEEEecCCCCe
Confidence 1235888999999998877766 899999998763 2 12222 1 123456788888 89999998764 236
Q ss_pred EEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC-CcEEEeeCCC
Q 015301 209 CKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-QTTKLWDIRK 262 (409)
Q Consensus 209 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~ 262 (409)
|.+|.+...............+....+...+++.+++|+++..+ ..|.+|....
T Consensus 268 I~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 268 IAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred EEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 77777652211122222333344446888999999999998874 4688888765
No 267
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.54 E-value=1.4e-12 Score=100.59 Aligned_cols=270 Identities=18% Similarity=0.253 Sum_probs=172.6
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee--eeeeeecccc------------cceEEEEEeCCCC--cEEEE
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK--IQKDIETKAL------------RWTITDTSLSPDQ--RFLVY 102 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~--~~~~~~~~~~------------~~~v~~~~~s~~~--~~l~~ 102 (409)
....|+++.|...|.||+||...|.|.+|.-+.... .....+.++| ...|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 346799999999999999999999999998654321 1111122222 2368888887653 35666
Q ss_pred EecCCEEEEEEcCCCccccccc-------------------------eeceeeeeeeec---CCCCcceeeEEEEEcCCC
Q 015301 103 ASICAIVNIVDVGSSARESLAN-------------------------VTEIHKGLDFSA---DGDEDEFGIFSVKFSTDG 154 (409)
Q Consensus 103 ~~~dg~i~~w~~~~~~~~~~~~-------------------------~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~ 154 (409)
.+.|.+|++|.+.......... ......-+...+ ....|..-+.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7789999999987652211110 000000011111 124688889999999998
Q ss_pred CeEEEEEecCeEEEEECCCCeeee---EEcCCC-----CCeEEEEEeCCCCcEEEEeeCCCeEEEeccccccc--C----
Q 015301 155 QELVAAGSDNFIYVYDLQANKCSL---RIPAHK-----SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFIS--K---- 220 (409)
Q Consensus 155 ~~l~~~~~d~~i~v~d~~~~~~~~---~~~~~~-----~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~---- 220 (409)
..++++ .|-.|.+|+++-..... -++.|. .-|++..|+|...+.+.-.+..|.|++-|+|...- .
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 888876 46789999986433222 233343 45788999988888888889999999999983210 0
Q ss_pred ------CceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccc
Q 015301 221 ------GRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 294 (409)
Q Consensus 221 ------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (409)
+.....+.+-...|..+.|+++|+++++-..- ++++||++...
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k------------------------------ 312 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAK------------------------------ 312 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEeccccc------------------------------
Confidence 01111122334567889999999999876554 79999998743
Q ss_pred cCccceeeeecccce---------eeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 295 PHDQSLATYKGHSVL---------RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 295 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
.++.+...|... ...+-..|...||.|.+.+++|+.....-+|-..
T Consensus 313 ---~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 313 ---NPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred ---CCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 223333222211 1112233556788888899999888777777643
No 268
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.53 E-value=1.1e-13 Score=118.62 Aligned_cols=303 Identities=17% Similarity=0.279 Sum_probs=194.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCC--cEEEEEecCCEEEEEEcCC
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ--RFLVYASICAIVNIVDVGS 116 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~~w~~~~ 116 (409)
-.+.+.++..+|.|+-+|.++.-| +.+-|++........+. +...+.|..+.|+|.. .+-++......-.+|++..
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 346788899999999999998877 77788877644433332 2234567888898753 4555555556666898865
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEEEecCeEEEEECCCCe-eeeEEcCCCCCeEEEEEeC
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANK-CSLRIPAHKSDVNTVCFAD 194 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~ 194 (409)
.......-.. .+|...|+.+.|+|+. ..+++++.|..+..||+++.. ++.....-...-..++|+-
T Consensus 101 ss~~aIef~l------------hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwny 168 (1081)
T KOG0309|consen 101 SSSNAIEFVL------------HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNY 168 (1081)
T ss_pred CCccceEEEE------------ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecc
Confidence 4432222221 2566689999999954 467888889999999998764 3444444445668899996
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC-CCCeEEEEeCCCcEEEeeCCCCcccccccccc
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 273 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 273 (409)
.+++.+++ +....|.+||+| ....++..+++|...|..+.|.. ....+.+.+.|++|+.||..+...........
T Consensus 169 k~p~vlas-shg~~i~vwd~r---~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt 244 (1081)
T KOG0309|consen 169 KDPNVLAS-SHGNDIFVWDLR---KGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT 244 (1081)
T ss_pred cCcchhhh-ccCCceEEEecc---CCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc
Confidence 66666654 566789999987 45667788888999999998865 23468889999999999987743322221111
Q ss_pred cccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccC-CceEEEec
Q 015301 274 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS-GAQVAKLD 352 (409)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~~ 352 (409)
.-..|..+.+.+.. +..+... ..+..+..-.-+..-..|+..+ .+++.++.
T Consensus 245 ~~piw~~r~~Pfg~---------g~~~mp~-------------------~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~ 296 (1081)
T KOG0309|consen 245 NFPIWRGRYLPFGE---------GYCIMPM-------------------VGGNMVPQLRCENSDLEWNVFDLNTPVHTFV 296 (1081)
T ss_pred cCcceeccccccCc---------eeEeccc-------------------cCCeeeeeccccchhhhhccccCCcceeeec
Confidence 11112111111110 0000000 0111111111122234455444 36799999
Q ss_pred cCCcceeeeEEecC--------cC--eEEeecCCCeEEEEecCCC
Q 015301 353 FHNAPVRDCCWHPI--------YP--MLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 353 ~~~~~v~~~~~s~~--------~~--~l~s~~~dg~i~iw~~~~~ 387 (409)
||...|....|-.. .+ .|+|-+.|..+++|.+.+.
T Consensus 297 GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 297 GHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred CcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 99999988777532 22 7999999999999988653
No 269
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=5.1e-12 Score=109.31 Aligned_cols=376 Identities=11% Similarity=0.062 Sum_probs=215.4
Q ss_pred eeeEEecCceeEee-ccceEEEEeeecCCCceeecCCCCeEEEEECCCC------------CEEEEEeCCCcEEEEEcCC
Q 015301 5 REVNYSGRGRFSAA-DSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDG------------SFFVAASQESNIKVYNVDK 71 (409)
Q Consensus 5 ~~~~~s~dg~~~~~-~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~------------~~l~t~~~d~~i~vw~~~~ 71 (409)
.++-|+|.|.+... ++...+.+....+..+.+..|...|+.+.|.|-. -++|++...|.|.+||...
T Consensus 19 ~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~ 98 (1062)
T KOG1912|consen 19 NAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL 98 (1062)
T ss_pred cccccCccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh
Confidence 35678888877554 5556667777777778899999999999998732 2567777889999999987
Q ss_pred CeeeeeeeecccccceEEEEEeCC---CC-cEEEEEecCCEEEEEEcCCCccccccceeceee-eeeeecCCC-------
Q 015301 72 NWKIQKDIETKALRWTITDTSLSP---DQ-RFLVYASICAIVNIVDVGSSARESLANVTEIHK-GLDFSADGD------- 139 (409)
Q Consensus 72 ~~~~~~~~~~~~~~~~v~~~~~s~---~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~------- 139 (409)
...+.. ...+..++..++|-+ +. ..|++-.....+.+|+..+++...........- .+.+.+...
T Consensus 99 ~s~~~~---l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~ 175 (1062)
T KOG1912|consen 99 ASVINW---LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG 175 (1062)
T ss_pred hhhhhh---hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence 644333 344555888999866 33 466666778899999998887543322211110 011111110
Q ss_pred -------------------Cccee---------------------------------eEEEEEcCCCCeEEEEEecCeEE
Q 015301 140 -------------------EDEFG---------------------------------IFSVKFSTDGQELVAAGSDNFIY 167 (409)
Q Consensus 140 -------------------~~~~~---------------------------------v~~~~~~~~~~~l~~~~~d~~i~ 167 (409)
++... ...++|+|.-+.++.......+.
T Consensus 176 s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prell 255 (1062)
T KOG1912|consen 176 SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELL 255 (1062)
T ss_pred cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceE
Confidence 00000 12335566555555555667788
Q ss_pred EEECCCCeeeeEEcCCCCCeEEEEEeC-CCCcEEEEeeCCCeEEEecccccccCC------------ceeeeeecc-ccc
Q 015301 168 VYDLQANKCSLRIPAHKSDVNTVCFAD-ETGHLIFSGSDDSLCKVWDRRCFISKG------------RANGVLMGH-LEG 233 (409)
Q Consensus 168 v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~------------~~~~~~~~~-~~~ 233 (409)
++|++-..++....-..+.+.-+.+.| +..+.|++...||.+.+|-.+...... .+...+..- +..
T Consensus 256 v~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~r 335 (1062)
T KOG1912|consen 256 VFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFR 335 (1062)
T ss_pred EEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcc
Confidence 899887777777765566666667764 456789999999999999865211110 011111100 011
Q ss_pred eeEEEEcCC-CCeEEEEeCCCcEEEeeCCCCcccccccccccc--cccccccccccccc-------eeccccCccceeee
Q 015301 234 ITFIDSRRD-GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD--YDWDYRWMEYPSYA-------RRLKHPHDQSLATY 303 (409)
Q Consensus 234 v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 303 (409)
+......|. ...++.--.+|.+.+|.++++............ ..+++......-.. ..-.++.+......
T Consensus 336 p~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~ 415 (1062)
T KOG1912|consen 336 PVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRM 415 (1062)
T ss_pred cceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeec
Confidence 111222332 444555556888999999864433222111111 11111110000000 00011111111111
Q ss_pred ecccceeeeeEEEEeeeecCC-------CCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEe----
Q 015301 304 KGHSVLRTLIRCYFSPEYSTA-------QKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLIS---- 372 (409)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~s~~-------~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s---- 372 (409)
..-+.... . .-.|. -.++|.|+..|+|.++|+.++.....+..|...|.++.|-...+++-.
T Consensus 416 ~p~p~~t~----~---~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~ 488 (1062)
T KOG1912|consen 416 RPMPELTK----V---ENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSH 488 (1062)
T ss_pred ccCcccce----e---ecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeecc
Confidence 11000000 0 00111 137899999999999999999999999999999999999766553321
Q ss_pred -----ecCCCeEEEEecCCCccc
Q 015301 373 -----SSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 373 -----~~~dg~i~iw~~~~~~~~ 390 (409)
++.-+.+.+-|++++...
T Consensus 489 ~n~~sg~vrN~l~vtdLrtGlsk 511 (1062)
T KOG1912|consen 489 VNSASGGVRNDLVVTDLRTGLSK 511 (1062)
T ss_pred ccccccceeeeEEEEEccccccc
Confidence 222346778888887554
No 270
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.51 E-value=1.2e-10 Score=95.38 Aligned_cols=151 Identities=15% Similarity=0.104 Sum_probs=115.4
Q ss_pred CceeecCCCCeEEEEECCCCCEEEEEeCCC-cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEE
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQES-NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~-~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~ 111 (409)
.....+|.+.|.-..+.-+++-++.|..|| .+-|+|.++++ .......- +.|.++..+|+|++++++.....+.+
T Consensus 352 ~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~l---g~I~av~vs~dGK~~vvaNdr~el~v 427 (668)
T COG4946 352 YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDL---GNIEAVKVSPDGKKVVVANDRFELWV 427 (668)
T ss_pred eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCc---cceEEEEEcCCCcEEEEEcCceEEEE
Confidence 334458889999999998888999999998 89999999884 33333333 37999999999999999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec----CeEEEEECCCCeeeeEEcCCCCCe
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD----NFIYVYDLQANKCSLRIPAHKSDV 187 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~~~~~~v 187 (409)
.|++++......+... +-|+.+.|+|+++++|-+--+ ..|+++|+.+++...... ..+.=
T Consensus 428 ididngnv~~idkS~~---------------~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~D 491 (668)
T COG4946 428 IDIDNGNVRLIDKSEY---------------GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYD 491 (668)
T ss_pred EEecCCCeeEeccccc---------------ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccccc
Confidence 9999988654433222 249999999999999987554 479999999888654432 33333
Q ss_pred EEEEEeCCCCcEEEEee
Q 015301 188 NTVCFADETGHLIFSGS 204 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~ 204 (409)
.+-+|. +++++|.--+
T Consensus 492 fsPaFD-~d~ryLYfLs 507 (668)
T COG4946 492 FSPAFD-PDGRYLYFLS 507 (668)
T ss_pred cCcccC-CCCcEEEEEe
Confidence 566787 7888776654
No 271
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=6.2e-13 Score=113.91 Aligned_cols=262 Identities=10% Similarity=0.076 Sum_probs=176.2
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeE
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 166 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 166 (409)
...++.|+.+..++|+|+.||.+++..+.+...............+......++|...|.-+.|+.+.+.|-+...+|.|
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI 95 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI 95 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence 68899999999999999999999999998776554444434445556666778999999999999999999999999999
Q ss_pred EEEECCCCeeeeEE--cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCC
Q 015301 167 YVYDLQANKCSLRI--PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR 244 (409)
Q Consensus 167 ~v~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 244 (409)
.+|-+-.+.....+ ....+-|.+++|+ .+|..++....||.|.+=.+. +..+....-.......+.|++|.+
T Consensus 96 iVWmlykgsW~EEMiNnRnKSvV~SmsWn-~dG~kIcIvYeDGavIVGsvd-----GNRIwgKeLkg~~l~hv~ws~D~~ 169 (1189)
T KOG2041|consen 96 IVWMLYKGSWCEEMINNRNKSVVVSMSWN-LDGTKICIVYEDGAVIVGSVD-----GNRIWGKELKGQLLAHVLWSEDLE 169 (1189)
T ss_pred EEEeeecccHHHHHhhCcCccEEEEEEEc-CCCcEEEEEEccCCEEEEeec-----cceecchhcchheccceeecccHH
Confidence 99999887655433 2356778999999 999999999999998776643 221111111112344688999999
Q ss_pred eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCC
Q 015301 245 YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA 324 (409)
Q Consensus 245 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 324 (409)
.++.+-..|.+.+||....-............ .......+..+....-... .-...-||
T Consensus 170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~-------------tg~~s~~~~kia~i~w~~g--------~~~~v~pd 228 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNFERKLEKDCEVNG-------------TGIFSNFPTKIAEIEWNTG--------PYQPVPPD 228 (1189)
T ss_pred HHHhhhcCCcEEEecccccHHHhhhhceEEee-------------eeeecCCCccccceeeccC--------ccccCCCC
Confidence 99988899999999976522111100000000 0000000000000000000 00013457
Q ss_pred CCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCC
Q 015301 325 QKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWD 376 (409)
Q Consensus 325 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 376 (409)
...|+++..+|.+.|..-.+......+. ..-.|....|+++|..|+.+|.|
T Consensus 229 rP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 229 RPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred CCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCc
Confidence 8899999999999988765543322332 22578899999999999999865
No 272
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.50 E-value=2.5e-10 Score=107.06 Aligned_cols=329 Identities=14% Similarity=0.130 Sum_probs=185.3
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEE----EcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEc
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVY----NVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDV 114 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~ 114 (409)
..+.|.++.|-++...++.+..+|.|.+. +.... .+.. ....+..|.+++||||+..|+.++.++++.+.+-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~---VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEI---VGSVDSGILAASWSPDEELLALVTGEGNLLLMTR 149 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEE---EEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec
Confidence 34789999999999999999999999999 44433 2222 1223447999999999999999999998877643
Q ss_pred CCCccccccce-------------eceeeeeeeecCC-----------------CC---cceeeEEEEEcCCCCeEEEEE
Q 015301 115 GSSARESLANV-------------TEIHKGLDFSADG-----------------DE---DEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 115 ~~~~~~~~~~~-------------~~~~~~~~~~~~~-----------------~~---~~~~v~~~~~~~~~~~l~~~~ 161 (409)
. .+....... .-..+..+|.+.. .+ ....-..++|-.||.++|+.+
T Consensus 150 ~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss 228 (928)
T PF04762_consen 150 D-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSS 228 (928)
T ss_pred c-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEE
Confidence 2 100000000 0000000010000 00 222466789999999999887
Q ss_pred e---c---CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeC---CCeEEEecccccccCCceeeeeecccc
Q 015301 162 S---D---NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD---DSLCKVWDRRCFISKGRANGVLMGHLE 232 (409)
Q Consensus 162 ~---d---~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~ 232 (409)
- . ..++||+-+ |+...+-..-.+--.+++|- |.|++||+.-. ...|.+|.-. ....+.....+.....
T Consensus 229 ~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~ 305 (928)
T PF04762_consen 229 VEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWR-PSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEE 305 (928)
T ss_pred EEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCC-CCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCc
Confidence 5 2 578999965 66554444333444678998 89999998764 3457777632 1111222222223456
Q ss_pred ceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCc-cceeeeecccceee
Q 015301 233 GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD-QSLATYKGHSVLRT 311 (409)
Q Consensus 233 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 311 (409)
.|..+.|++|+..|+....|. |.+|-..+..-.....-..... .......+++.. ..+..+... ....
T Consensus 306 ~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~---------~~~~~~~Wdpe~p~~L~v~t~~-g~~~ 374 (928)
T PF04762_consen 306 KVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS---------ESVNFVKWDPEKPLRLHVLTSN-GQYE 374 (928)
T ss_pred eeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC---------CCCCceEECCCCCCEEEEEecC-CcEE
Confidence 789999999999999987665 9999887733111110000000 000001111111 111111110 1112
Q ss_pred eeEEEEeeeecC----CCCEEEEEeCCCeEEEEEccCCc-----eEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEE
Q 015301 312 LIRCYFSPEYST----AQKYIYTGSSDNSVYIYDLVSGA-----QVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 382 (409)
Q Consensus 312 ~~~~~~~~~~s~----~~~~l~~~~~dg~v~i~d~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 382 (409)
.....|..+.++ +..-++..-....+.+-.++... ....+. ...+|.+++|++++..+++-..||.|.+|
T Consensus 375 ~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~ 453 (928)
T PF04762_consen 375 IYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIY 453 (928)
T ss_pred EEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCCCEEEE
Confidence 222333333332 11112222122345555544332 123333 35789999999998888888899999999
Q ss_pred ecCCC
Q 015301 383 EIPGI 387 (409)
Q Consensus 383 ~~~~~ 387 (409)
.....
T Consensus 454 ~~~~~ 458 (928)
T PF04762_consen 454 EWDLK 458 (928)
T ss_pred EecCC
Confidence 86554
No 273
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=6.3e-11 Score=98.79 Aligned_cols=278 Identities=14% Similarity=0.136 Sum_probs=176.6
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec-----------CCEEEE
Q 015301 43 VYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI-----------CAIVNI 111 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------dg~i~~ 111 (409)
=+-+.|||.|.||+|--.-| |.+|--++-..+++. .|. .|.-+.|||..+||++=+. ...+.|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF----~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF----YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc----cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 45689999999999998877 899976554333332 233 4889999999999998652 257999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC 191 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 191 (409)
||+.++.............. .-.-+.||.|++++|.-.. ..|.||+..+..++-.-...-..|....
T Consensus 287 WDI~tG~lkrsF~~~~~~~~------------~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~Fs 353 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPYL------------KWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFS 353 (698)
T ss_pred EEccccchhcceeccCCCcc------------ccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcc
Confidence 99999987665554311110 1223689999999988766 5699999877554433233456788899
Q ss_pred EeCCCCcEEEEeeCC-----CeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeC----------CCcEE
Q 015301 192 FADETGHLIFSGSDD-----SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK----------DQTTK 256 (409)
Q Consensus 192 ~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~ 256 (409)
|+ |.+++||-=... ..+.+-.+ .....++...-++-.=..+-|..+|.+|+.--. -..+.
T Consensus 354 ws-P~~~llAYwtpe~~~~parvtL~ev----Ps~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~e 428 (698)
T KOG2314|consen 354 WS-PTSNLLAYWTPETNNIPARVTLMEV----PSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLE 428 (698)
T ss_pred cC-CCcceEEEEcccccCCcceEEEEec----CccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEE
Confidence 99 667777643221 22344442 244444444444433345667788888765321 11233
Q ss_pred EeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC--
Q 015301 257 LWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD-- 334 (409)
Q Consensus 257 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-- 334 (409)
|+.++... -++... .....+..-+|.|.|..+++-+.+
T Consensus 429 IfrireKd---------------------------------Ipve~v-------elke~vi~FaWEP~gdkF~vi~g~~~ 468 (698)
T KOG2314|consen 429 IFRIREKD---------------------------------IPVEVV-------ELKESVIAFAWEPHGDKFAVISGNTV 468 (698)
T ss_pred EEEeeccC---------------------------------CCceee-------ecchheeeeeeccCCCeEEEEEcccc
Confidence 33333311 111111 122344556788888887766543
Q ss_pred -CeEEEEEccC-C---ceEEEeccCCcceeeeEEecCcCeEEee---cCCCeEEEEecCC
Q 015301 335 -NSVYIYDLVS-G---AQVAKLDFHNAPVRDCCWHPIYPMLISS---SWDCNIVRWEIPG 386 (409)
Q Consensus 335 -g~v~i~d~~~-~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~---~~dg~i~iw~~~~ 386 (409)
.++.+|.+++ . +.+..+. ....+.+.|+|.|++++.+ |..|.+.++|++-
T Consensus 469 k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 469 KNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred ccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 5789998873 2 2334443 3567889999999977765 4678999999873
No 274
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.45 E-value=1.4e-10 Score=95.68 Aligned_cols=287 Identities=13% Similarity=0.077 Sum_probs=181.0
Q ss_pred CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC-----
Q 015301 32 GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC----- 106 (409)
Q Consensus 32 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----- 106 (409)
....+..-.-++..+.|||.|.+|++....| |.+|.......+.... |. .|..+.|+|.+++|.+=+..
T Consensus 24 ~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~----~~-~V~~~~fSP~~kYL~tw~~~pi~~p 97 (561)
T COG5354 24 IHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR----HP-DVKYLDFSPNEKYLVTWSREPIIEP 97 (561)
T ss_pred ccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee----cC-CceecccCcccceeeeeccCCccCh
Confidence 3344555677899999999999999887765 9999988765333321 22 58999999999999985533
Q ss_pred ----------CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeE-EEEEcCCCCeEEEEEecCeEEEEECCCCe
Q 015301 107 ----------AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIF-SVKFSTDGQELVAAGSDNFIYVYDLQANK 175 (409)
Q Consensus 107 ----------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 175 (409)
..+.+||..++............. -.+ -+.|+.+.++++-- ....+.|+++ ++.
T Consensus 98 e~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~-------------~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n 162 (561)
T COG5354 98 EIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY-------------LGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDN 162 (561)
T ss_pred hhccCCccccCceeEEeccCceeEeeccccCCcc-------------cccceeeeeecchhhhhh-ccCeEEEEec-CCc
Confidence 348999999887655444332210 122 57788888776654 3457999997 333
Q ss_pred ee-eEEcC-CCCCeEEEEEeCC-CCcEEEE-----eeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEE
Q 015301 176 CS-LRIPA-HKSDVNTVCFADE-TGHLIFS-----GSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFI 247 (409)
Q Consensus 176 ~~-~~~~~-~~~~v~~~~~~~~-~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 247 (409)
.. ..+.. ....|....|+|. ++..|+. .+..+.+++|.+. .+..+....-....-..+.|.+.|++|+
T Consensus 163 ~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp----~~s~l~tk~lfk~~~~qLkW~~~g~~ll 238 (561)
T COG5354 163 IEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIP----KNSVLVTKNLFKVSGVQLKWQVLGKYLL 238 (561)
T ss_pred cccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEcc----CCCeeeeeeeEeecccEEEEecCCceEE
Confidence 21 11111 1356788888864 4445543 4567889999964 4444333332333345677889888776
Q ss_pred EEe-----------CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEE
Q 015301 248 SNG-----------KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCY 316 (409)
Q Consensus 248 ~~~-----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (409)
+-- ....+.+++++...+ .... .....+
T Consensus 239 ~l~~t~~ksnKsyfgesnLyl~~~~e~~i-----------------------------------~V~~------~~~~pV 277 (561)
T COG5354 239 VLVMTHTKSNKSYFGESNLYLLRITERSI-----------------------------------PVEK------DLKDPV 277 (561)
T ss_pred EEEEEeeecccceeccceEEEEeeccccc-----------------------------------ceec------cccccc
Confidence 432 123456666553211 1110 111345
Q ss_pred EeeeecCCCCEEEEEe--CCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCC---CeEEEEecCCC
Q 015301 317 FSPEYSTAQKYIYTGS--SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWD---CNIVRWEIPGI 387 (409)
Q Consensus 317 ~~~~~s~~~~~l~~~~--~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iw~~~~~ 387 (409)
.+.+|.|.++.+++.+ .+-.+.++|++.. ....+ ....=+.+.|+|.+++++.++-| |.+-+|+....
T Consensus 278 hdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 278 HDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred eeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCc
Confidence 5667888887776654 6788999998765 43333 34455667888888888887655 67888887654
No 275
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.45 E-value=1.1e-09 Score=90.50 Aligned_cols=245 Identities=16% Similarity=0.141 Sum_probs=143.9
Q ss_pred ECCCCCEEEEEeC----------CCcEEEEEcCCCeeeeeeeeccc----ccceEEEEEeCCCCcEEEEEe-c-CCEEEE
Q 015301 48 FSNDGSFFVAASQ----------ESNIKVYNVDKNWKIQKDIETKA----LRWTITDTSLSPDQRFLVYAS-I-CAIVNI 111 (409)
Q Consensus 48 ~s~~~~~l~t~~~----------d~~i~vw~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~-~-dg~i~~ 111 (409)
+||||+.|+++.. +..|.+||..+.+....+..... .......++++|||++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999999877655 68899999999866655432211 012344789999999999876 3 689999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCC-Ceee-eE---EcCCCCC
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA-NKCS-LR---IPAHKSD 186 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~-~~---~~~~~~~ 186 (409)
.|+.+++.......... ..-...+++... +-+.||......+.+ ++.. .. +.....+
T Consensus 133 vD~~~~kvv~ei~vp~~----------------~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~ 194 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDC----------------YHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEY 194 (352)
T ss_pred EECCCCcEEEEEeCCCC----------------cEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccc
Confidence 99999886544433221 111112222211 112234333322221 1111 11 1110000
Q ss_pred eE-EEEEeCCCCcEEEEeeCCCeEEEeccccccc-CCceeeeee-------ccccceeEEEEcCCCCeEEEEe-------
Q 015301 187 VN-TVCFADETGHLIFSGSDDSLCKVWDRRCFIS-KGRANGVLM-------GHLEGITFIDSRRDGRYFISNG------- 250 (409)
Q Consensus 187 v~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~------- 250 (409)
+. .-.|.+.++.++++..+ |+|.+.|+..... .......+. -..+...-++++++++.+++..
T Consensus 195 v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~t 273 (352)
T TIGR02658 195 LINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWT 273 (352)
T ss_pred cccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcccc
Confidence 00 00445447888877666 9999999642111 111111111 0233445599999999888743
Q ss_pred ---CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCC-
Q 015301 251 ---KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK- 326 (409)
Q Consensus 251 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~- 326 (409)
..+.|.++|..+. +.+..+... ...+.++++||++
T Consensus 274 hk~~~~~V~ViD~~t~----------------------------------kvi~~i~vG-------~~~~~iavS~Dgkp 312 (352)
T TIGR02658 274 HKTASRFLFVVDAKTG----------------------------------KRLRKIELG-------HEIDSINVSQDAKP 312 (352)
T ss_pred ccCCCCEEEEEECCCC----------------------------------eEEEEEeCC-------CceeeEEECCCCCe
Confidence 1247999998773 223332211 2346778999999
Q ss_pred EEEEEe-CCCeEEEEEccCCceEEEec
Q 015301 327 YIYTGS-SDNSVYIYDLVSGAQVAKLD 352 (409)
Q Consensus 327 ~l~~~~-~dg~v~i~d~~~~~~~~~~~ 352 (409)
+|++.. .++.|.++|..+++.+.++.
T Consensus 313 ~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 313 LLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 887776 57889999999999998883
No 276
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.45 E-value=3.9e-11 Score=94.03 Aligned_cols=250 Identities=16% Similarity=0.159 Sum_probs=173.6
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcC-CCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVG-SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
..++...|++...-|...-+++.+.|.++++|--. .++..+...... ..+++++.+.++...|++
T Consensus 20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~m--------------P~~~~~~~y~~e~~~L~v 85 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYM--------------PSPCSAMEYVSESRRLYV 85 (404)
T ss_pred hcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhC--------------CCCceEeeeeccceEEEE
Confidence 44566678888888888889999999999999543 333322222211 226899999999999999
Q ss_pred EEecCeEEEEECC----CCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccccee
Q 015301 160 AGSDNFIYVYDLQ----ANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 235 (409)
Q Consensus 160 ~~~d~~i~v~d~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~ 235 (409)
|-..|++.-+.+. .....+....|...+..+-|+ ....++++.+.|..+.---.+ .+..+....- ...-+
T Consensus 86 g~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~-~~~e~V~s~~~dk~~~~hc~e----~~~~lg~Y~~-~~~~t 159 (404)
T KOG1409|consen 86 GQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFS-LTHEWVLSTGKDKQFAWHCTE----SGNRLGGYNF-ETPAS 159 (404)
T ss_pred EEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEec-CCceeEEEeccccceEEEeec----cCCcccceEe-eccCC
Confidence 9999999888653 444556667899999999999 778889998888766533321 2222211110 00111
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEE
Q 015301 236 FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRC 315 (409)
Q Consensus 236 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (409)
++.+.-. +...|...|.+..-.+.... -..+..+.+|. .+
T Consensus 160 ~~~~d~~--~~fvGd~~gqvt~lr~~~~~--------------------------------~~~i~~~~~h~------~~ 199 (404)
T KOG1409|consen 160 ALQFDAL--YAFVGDHSGQITMLKLEQNG--------------------------------CQLITTFNGHT------GE 199 (404)
T ss_pred CCceeeE--EEEecccccceEEEEEeecC--------------------------------CceEEEEcCcc------cc
Confidence 1111111 33444445555554433211 24566777776 45
Q ss_pred EEeeeecCCCCEEEEEeCCCeEEEEEccCCc-eEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 316 YFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA-QVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 316 ~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
+.+..|.+....|++|..|..+.+||+.-.+ ...++.+|...|..++..+.-+.|++++.||.|.+|++.....+
T Consensus 200 ~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 200 VTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVE 275 (404)
T ss_pred eEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeec
Confidence 5667888999999999999999999997554 45677899999999999888889999999999999999875544
No 277
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.43 E-value=3.6e-10 Score=97.59 Aligned_cols=263 Identities=13% Similarity=0.078 Sum_probs=159.8
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeee
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKG 131 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (409)
+..+++++.+|.+..+|..+++.+.+........ .... .++..+++++.++.+..+|..+++.........
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~---~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---- 135 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLS---GGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS---- 135 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc---cceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc----
Confidence 5678888889999999998886655432222211 1122 246778888899999999998887654333211
Q ss_pred eeeecCCCCcceeeEE-EEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCe-----EEEEEeCCCCcEEEEeeC
Q 015301 132 LDFSADGDEDEFGIFS-VKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV-----NTVCFADETGHLIFSGSD 205 (409)
Q Consensus 132 ~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~~~~ 205 (409)
.+.+ ... .+..++.++.++.+..+|.++++.+.......... ...... +..++.+..
T Consensus 136 ------------~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~---~~~v~~~~~ 198 (377)
T TIGR03300 136 ------------EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA---DGGVLVGFA 198 (377)
T ss_pred ------------eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE---CCEEEEECC
Confidence 1111 111 24467777789999999999999887765432211 112222 246777888
Q ss_pred CCeEEEecccccccCCceeeeeecc-c------cceeEEEEcC--CCCeEEEEeCCCcEEEeeCCCCccccccccccccc
Q 015301 206 DSLCKVWDRRCFISKGRANGVLMGH-L------EGITFIDSRR--DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDY 276 (409)
Q Consensus 206 dg~i~iwd~~~~~~~~~~~~~~~~~-~------~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 276 (409)
+|.+..+|++ +++........ . .....+.-+| .+..+++++.+|.+..+|.++++..
T Consensus 199 ~g~v~ald~~----tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~---------- 264 (377)
T TIGR03300 199 GGKLVALDLQ----TGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVL---------- 264 (377)
T ss_pred CCEEEEEEcc----CCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEE----------
Confidence 8999999965 44433222110 0 0000011111 2457788888999999998774321
Q ss_pred ccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccC-C
Q 015301 277 DWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH-N 355 (409)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~ 355 (409)
-...... ...+. .++..+++++.+|.++.+|..+++.+...... .
T Consensus 265 ------------------------W~~~~~~--------~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~ 310 (377)
T TIGR03300 265 ------------------------WKRDASS--------YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKY 310 (377)
T ss_pred ------------------------EeeccCC--------ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccC
Confidence 1111000 01111 13567888889999999999999887665322 1
Q ss_pred cceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 356 APVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 356 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
........ .+..|++++.||.|+++|..+++..
T Consensus 311 ~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 311 RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred CccccCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 22222222 3568888999999999998876553
No 278
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.43 E-value=9.8e-10 Score=94.92 Aligned_cols=260 Identities=13% Similarity=0.092 Sum_probs=155.8
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEE-EEeCCCCcEEEEEecCCEEEEEEcCCCccccccceecee
Q 015301 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITD-TSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIH 129 (409)
Q Consensus 51 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~ 129 (409)
++..++.++.++.+..+|.++++.+.+.... . .+.+ ... .+..++.++.++.+..||..+++...........
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~---~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~ 177 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-S---EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA 177 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-c---eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc
Confidence 4667888888999999999888665543211 1 2221 111 2456777788999999999988764333221110
Q ss_pred eeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCC----C------e-EEEEEeCCCCc
Q 015301 130 KGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS----D------V-NTVCFADETGH 198 (409)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~----~------v-~~~~~~~~~~~ 198 (409)
.. .. ...+.... + ..++.+..++.+..+|.++|+.+........ . + ....+ .+.
T Consensus 178 ~~--~~--------~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~ 242 (377)
T TIGR03300 178 LT--LR--------GSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGG 242 (377)
T ss_pred ee--ec--------CCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECC
Confidence 00 00 00011111 2 3677788889999999999987655421100 0 0 11112 245
Q ss_pred EEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccc
Q 015301 199 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDW 278 (409)
Q Consensus 199 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 278 (409)
.+++++.+|.+..+|.. +++....... ....... ..+..+++++.+|.+..+|..+.+...
T Consensus 243 ~vy~~~~~g~l~a~d~~----tG~~~W~~~~--~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W----------- 303 (377)
T TIGR03300 243 QVYAVSYQGRVAALDLR----SGRVLWKRDA--SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELW----------- 303 (377)
T ss_pred EEEEEEcCCEEEEEECC----CCcEEEeecc--CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEE-----------
Confidence 77788889999999964 5544443321 1111222 246678888899999999987743211
Q ss_pred ccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcce
Q 015301 279 DYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPV 358 (409)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v 358 (409)
....... ....++.. .+..|++++.+|.|+++|..+++.+.+++.+...+
T Consensus 304 -----------------------~~~~~~~-----~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~ 353 (377)
T TIGR03300 304 -----------------------KNDELKY-----RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGI 353 (377)
T ss_pred -----------------------ccccccC-----CccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcc
Confidence 1100000 00111122 25688999999999999999999999988666543
Q ss_pred e-eeEEecCcCeEEeecCCCeEEEE
Q 015301 359 R-DCCWHPIYPMLISSSWDCNIVRW 382 (409)
Q Consensus 359 ~-~~~~s~~~~~l~s~~~dg~i~iw 382 (409)
. ...+. ++ .|+.++.||.|+.+
T Consensus 354 ~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 354 ASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred ccCCEEE-CC-EEEEEeCCceEEEe
Confidence 3 33333 33 47788899999876
No 279
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=1.4e-12 Score=108.65 Aligned_cols=285 Identities=12% Similarity=0.138 Sum_probs=183.3
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe----eeeeeeecccccceEEEEEeCCCCcEEEEEecCCEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW----KIQKDIETKALRWTITDTSLSPDQRFLVYASICAIV 109 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 109 (409)
..+.||...|..++--.+.+-+++++.|++|++|.+.... ..........|+.+|.++.|-.+.++++++ ||.|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence 3567999999999877778889999999999999986531 122345667788899999999998888765 8999
Q ss_pred EEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC--CCCeEEEE-EecCeEEEEECCCCeeeeEEc-----
Q 015301 110 NIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--DGQELVAA-GSDNFIYVYDLQANKCSLRIP----- 181 (409)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~----- 181 (409)
++||.--++......-... .+.+..+...+ +...++.+ +...+|+++|.+..+....++
T Consensus 807 HlWDPFigr~Laq~~dapk-------------~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~ 873 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPK-------------EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP 873 (1034)
T ss_pred eeecccccchhHhhhcCcc-------------cCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCC
Confidence 9999876654321111110 11223333333 34444444 568899999999887766553
Q ss_pred CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEE-eeC
Q 015301 182 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKL-WDI 260 (409)
Q Consensus 182 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~ 260 (409)
+.+.-+.+++.. +.|+.++++-.+|.|.+.|.| +++.+..++.-.-....++ .|..+.|+....|.++.+ |..
T Consensus 874 ~Pna~~R~iaVa-~~GN~lAa~LSnGci~~LDaR----~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 874 GPNALTRAIAVA-DKGNKLAAALSNGCIAILDAR----NGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHA 947 (1034)
T ss_pred CCchheeEEEec-cCcchhhHHhcCCcEEEEecC----CCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehh
Confidence 445668899998 899999999999999999976 7776666655443343343 345566777777888877 764
Q ss_pred CCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEE
Q 015301 261 RKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIY 340 (409)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~ 340 (409)
-.+....+. +..+.... | .-.-|.-|+++.....+.+|
T Consensus 948 ldgimh~q~----------------------------------kpppepah-----f---lqsvgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 948 LDGIMHLQD----------------------------------KPPPEPAH-----F---LQSVGPSLVTAQNGNILGVY 985 (1034)
T ss_pred cCCeeeecc----------------------------------CCCCcchh-----h---hhccCceeEEeccCcEEEEE
Confidence 432111110 00000000 0 00114457777666777777
Q ss_pred EccCC----ceEEEec--cCCcceeeeEEecCcCeEEeecCCCeEEE
Q 015301 341 DLVSG----AQVAKLD--FHNAPVRDCCWHPIYPMLISSSWDCNIVR 381 (409)
Q Consensus 341 d~~~~----~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 381 (409)
.-... ..+..++ ...+..++++--|-+..+..|...|.|.+
T Consensus 986 ad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 986 ADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred ecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 42111 1122222 23456778888887777777888888765
No 280
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.40 E-value=2.2e-08 Score=94.38 Aligned_cols=324 Identities=12% Similarity=0.114 Sum_probs=183.4
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-------------Ce--ee--------eee---------------
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDK-------------NW--KI--------QKD--------------- 78 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~-------------~~--~~--------~~~--------------- 78 (409)
..-...|.|++||||+..||....++++.+-+-+- +. .+ .+.
T Consensus 117 G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p 196 (928)
T PF04762_consen 117 GSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDP 196 (928)
T ss_pred EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCC
Confidence 34567899999999999999999888887765320 00 00 000
Q ss_pred -------eecccccceEEEEEeCCCCcEEEEEec---C---CEEEEEEcCCCccccccceeceeeeeeeecC--------
Q 015301 79 -------IETKALRWTITDTSLSPDQRFLVYASI---C---AIVNIVDVGSSARESLANVTEIHKGLDFSAD-------- 137 (409)
Q Consensus 79 -------~~~~~~~~~v~~~~~s~~~~~l~~~~~---d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~-------- 137 (409)
.... .+..-..++|-.||+++|+.+. . ..++||+-+..-.............+.+.+.
T Consensus 197 ~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q 275 (928)
T PF04762_consen 197 TVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQ 275 (928)
T ss_pred CCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEE
Confidence 0000 2224467899999999998874 2 5799998762111111111111111111111
Q ss_pred --------------C----------CCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeee--eEEcC-CCCCeEEE
Q 015301 138 --------------G----------DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCS--LRIPA-HKSDVNTV 190 (409)
Q Consensus 138 --------------~----------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--~~~~~-~~~~v~~~ 190 (409)
+ ......|..+.|++++..|++...|. |.+|-..+-..- +.+.. ....+..+
T Consensus 276 ~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~ 354 (928)
T PF04762_consen 276 RLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFV 354 (928)
T ss_pred EcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCce
Confidence 1 12345799999999999999877555 999998876532 23322 23345569
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCC--------ceeeee-----------------------eccccceeEEEE
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKG--------RANGVL-----------------------MGHLEGITFIDS 239 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------~~~~~~-----------------------~~~~~~v~~~~~ 239 (409)
.|+|.+...|...+.+|.+..++..-....+ ..+..+ .....+|..++|
T Consensus 355 ~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf 434 (928)
T PF04762_consen 355 KWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAF 434 (928)
T ss_pred EECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEE
Confidence 9998888888888887777666543100000 001111 113467999999
Q ss_pred cCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecc----cceeeeeEE
Q 015301 240 RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGH----SVLRTLIRC 315 (409)
Q Consensus 240 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 315 (409)
++++..+++...||.+.+|............. .....+... .........
T Consensus 435 ~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~ 488 (928)
T PF04762_consen 435 SPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPP--------------------------KLLSSISLDSMDISDSELPLGS 488 (928)
T ss_pred eCCCCeEEEEECCCCEEEEEecCCCcccccCc--------------------------chhhhccccccccccccccccc
Confidence 99988899999999999998654321110000 000000000 000000111
Q ss_pred EEeeeecCCCCEEEEEeCC---CeEEEEEccCCc---eEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 316 YFSPEYSTAQKYIYTGSSD---NSVYIYDLVSGA---QVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 316 ~~~~~~s~~~~~l~~~~~d---g~v~i~d~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
.....|..+..+++....+ ..+.++++...+ .+.....-.+.+..+...++...++.-..||.+...+.....
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~ 567 (928)
T PF04762_consen 489 LRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGEL 567 (928)
T ss_pred EEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCc
Confidence 2233444445555555443 678888874432 233333335566666666665546666679998876665543
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.40 E-value=7.7e-10 Score=105.88 Aligned_cols=271 Identities=10% Similarity=0.084 Sum_probs=157.9
Q ss_pred EEEEeCCC-CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeE
Q 015301 89 TDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFI 166 (409)
Q Consensus 89 ~~~~~s~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i 166 (409)
..++++++ +..+++-+.++.|+++|............ ...+..-.......-.....+++.++++.|+++.. ...|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~--g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGST--GEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccC--CCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 46788875 55566666788899999865432111100 00000000000111224678999998887766654 5679
Q ss_pred EEEECCCCeeeeEEcCC-----------------CCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee-
Q 015301 167 YVYDLQANKCSLRIPAH-----------------KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM- 228 (409)
Q Consensus 167 ~v~d~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~- 228 (409)
+++|..++.. .++.+. -.....++++|.++.++++.+.++.|++||.. .+.. ..+.
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~----~g~v-~~~~G 722 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNIS----DGVT-RVFSG 722 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECC----CCeE-EEEec
Confidence 9999877653 333110 12346899994477777888888999999964 2211 1111
Q ss_pred --------c------cccceeEEEEcCCCCeE-EEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceecc
Q 015301 229 --------G------HLEGITFIDSRRDGRYF-ISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK 293 (409)
Q Consensus 229 --------~------~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (409)
+ .......++++|+++.| ++-..++.|++||+.+............ ..
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~----------~~------- 785 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT----------FS------- 785 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc----------cC-------
Confidence 0 11245679999998854 4555678999999876432110000000 00
Q ss_pred ccCccceeeeecccc--eeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec-------------cCCcce
Q 015301 294 HPHDQSLATYKGHSV--LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD-------------FHNAPV 358 (409)
Q Consensus 294 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-------------~~~~~v 358 (409)
.....+..... ..........++++++|+++++-+.+++|++||..++....... +.-...
T Consensus 786 ----~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P 861 (1057)
T PLN02919 786 ----DNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEP 861 (1057)
T ss_pred ----cccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCc
Confidence 00000000000 00000112245678899988888899999999998776543221 111256
Q ss_pred eeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 359 RDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 359 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
..++++++|+++++-+.++.|++||+.+..
T Consensus 862 ~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 862 AGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred eEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 789999999988888899999999998754
No 282
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.38 E-value=1.4e-11 Score=92.70 Aligned_cols=202 Identities=15% Similarity=0.206 Sum_probs=121.6
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeee---------eecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 43 VYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD---------IETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~---------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
|+.+.|+.+ ..|+++..++.+.....-.+...... .....+.++-.+-+.+--++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 666667654 45677766666555544332111110 00001111111112223367799999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-----ecCeEEEEECCCCeeeeEEcCCCCCeE
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-----SDNFIYVYDLQANKCSLRIPAHKSDVN 188 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~d~~i~v~d~~~~~~~~~~~~~~~~v~ 188 (409)
.+. ......+....+. .-.+.++...++.+.++. .-+..+.|+++..+.+..-......|+
T Consensus 118 ~~~-~~~~~~~i~~~~~-------------~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~ 183 (319)
T KOG4714|consen 118 TDK-DLALMSRIPSIHS-------------GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVT 183 (319)
T ss_pred chH-HHhhhhhcccccc-------------cccccceeecccEEecCCcceEeeccceeeecccccccccccccccccch
Confidence 876 2211111111111 112223333444444332 123455666654333222222234499
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC-CCCeEEEEeCCCcEEEeeCCC
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 262 (409)
+++-+|...+++++|+.||.+-+||.|. ...+...+..|+.+++.+-|+| ++..|+++++||.+--||..+
T Consensus 184 ~l~~hp~qq~~v~cgt~dg~~~l~d~rn---~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 184 ALCSHPAQQHLVCCGTDDGIVGLWDARN---VAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhCCcccccEEEEecCCCeEEEEEccc---ccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999988888999999999999999983 3556677889999999999999 577899999999999999875
No 283
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.36 E-value=2.5e-09 Score=82.41 Aligned_cols=229 Identities=16% Similarity=0.158 Sum_probs=133.4
Q ss_pred EEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEE
Q 015301 91 TSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYD 170 (409)
Q Consensus 91 ~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 170 (409)
++.+.+|+.||+.- |..|.+=..++.=.....+.. .. .+....=..++|+||+..||.+...|+|+++|
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcq-------Vp---kD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfd 71 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQ-------VP---KDPNPQWRKLAWSPDCTLLAYAESTGTIRVFD 71 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEe-------cC---CCCCchheEEEECCCCcEEEEEcCCCeEEEEe
Confidence 45677888777654 566655544332111101000 00 01111356799999999999999999999999
Q ss_pred CCCCeeeeEEcC-------CCCCeEEEEEeCCC-----CcEEEEeeCCCeEEEeccccc-ccCCceeeeee---ccccce
Q 015301 171 LQANKCSLRIPA-------HKSDVNTVCFADET-----GHLIFSGSDDSLCKVWDRRCF-ISKGRANGVLM---GHLEGI 234 (409)
Q Consensus 171 ~~~~~~~~~~~~-------~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~---~~~~~v 234 (409)
+...+ +..+.. -...|..|.|.+.. ...|++-..+|.++-|-+... .........+. .+...|
T Consensus 72 l~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi 150 (282)
T PF15492_consen 72 LMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGI 150 (282)
T ss_pred cccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCce
Confidence 97533 333322 23567777787433 335667777888887765311 11222222222 246789
Q ss_pred eEEEEcCCCCeEEEEeCCCc-----------EEEeeCCCCcccccccccccccccccccccccccceeccccCccceeee
Q 015301 235 TFIDSRRDGRYFISNGKDQT-----------TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY 303 (409)
Q Consensus 235 ~~~~~~~~~~~l~~~~~dg~-----------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (409)
.++.++|..++|++|+.... +..|.+-+
T Consensus 151 ~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~----------------------------------------- 189 (282)
T PF15492_consen 151 NSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILS----------------------------------------- 189 (282)
T ss_pred eEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcC-----------------------------------------
Confidence 99999999898887775322 11111111
Q ss_pred ecccceeeeeEEEEeeeecCCCCEEEEEeCCC------eEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCC
Q 015301 304 KGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN------SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC 377 (409)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg------~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 377 (409)
-+|..+.+ +..+|+ +-.+|.+-+.+...........|..|..||||+.||+...+|
T Consensus 190 -----------------~~Pyyk~v-~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG 251 (282)
T PF15492_consen 190 -----------------DSPYYKQV-TSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSG 251 (282)
T ss_pred -----------------CCCcEEEc-cccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCC
Confidence 11111111 111111 123444433333222233466899999999999999999999
Q ss_pred eEEEEecCCCccc
Q 015301 378 NIVRWEIPGIGEA 390 (409)
Q Consensus 378 ~i~iw~~~~~~~~ 390 (409)
.|.+|++++....
T Consensus 252 ~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 252 SLSLWEIPSLRLQ 264 (282)
T ss_pred eEEEEecCcchhh
Confidence 9999999986543
No 284
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.34 E-value=5.9e-10 Score=84.59 Aligned_cols=266 Identities=10% Similarity=0.023 Sum_probs=159.7
Q ss_pred CCCcEEEEEcCCCee-eeeeeecccccceEEEEEeCC-----CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeee
Q 015301 60 QESNIKVYNVDKNWK-IQKDIETKALRWTITDTSLSP-----DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLD 133 (409)
Q Consensus 60 ~d~~i~vw~~~~~~~-~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 133 (409)
....+-+|+.-+..+ +.. --+.+.|.| ...+||.|+..|...+|...+.+......-.. ..++.
T Consensus 50 ~t~sv~i~~~y~N~~~iv~---------~y~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~s-nn~v~ 119 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVE---------FYTGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVS-NNDVT 119 (344)
T ss_pred ceeeeEeccccCCchhhEE---------eeecccccchHhhccccEEEeccccceeeeecccCcccceeeeccc-ccchh
Confidence 345677888766521 111 113455555 35689999999999999998765422211110 00000
Q ss_pred eecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEec
Q 015301 134 FSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD 213 (409)
Q Consensus 134 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 213 (409)
-+...+- ....+..++.|.++++.+++-+..........-.+.+++++ +++.++++.+....|..|.
T Consensus 120 ----------~~~r~cd--~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~s-nd~~~~~~Vgds~~Vf~y~ 186 (344)
T KOG4532|consen 120 ----------LVKRYCD--LKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYS-NDPSWGSSVGDSRRVFRYA 186 (344)
T ss_pred ----------hhhhhcc--cccceeeccCCcceeEEEEecCcccceeeccccceeeeEEc-CCCceEEEecCCCcceEEE
Confidence 0111111 22346667788888888886554333221111237899999 8999999999999999998
Q ss_pred ccccccCCceee-eeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceec
Q 015301 214 RRCFISKGRANG-VLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 292 (409)
Q Consensus 214 ~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (409)
+.. ....... ......+.-.+..|+.....+|++..||++.|||++.....-....
T Consensus 187 id~--~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s--------------------- 243 (344)
T KOG4532|consen 187 IDD--ESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS--------------------- 243 (344)
T ss_pred eCC--ccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc---------------------
Confidence 762 2222222 2333445567788999999999999999999999998432211100
Q ss_pred cccCccceeeeecccceeeeeEEEEeeeecCCC--CEEEEEeCCCeEEEEEccCCceEEEecc-------CCc-ceeeeE
Q 015301 293 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ--KYIYTGSSDNSVYIYDLVSGAQVAKLDF-------HNA-PVRDCC 362 (409)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~l~~~~~dg~v~i~d~~~~~~~~~~~~-------~~~-~v~~~~ 362 (409)
.+-..|. +.+....|++.| .+|+..-.-+.+.+.|+++++..+.+.. |.. .|..-.
T Consensus 244 --------strp~hn------Ga~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~ 309 (344)
T KOG4532|consen 244 --------STRPHHN------GAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTN 309 (344)
T ss_pred --------ccCCCCC------CceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccccccc
Confidence 0111121 122223455433 3566666678899999999876554432 332 377788
Q ss_pred EecCcCeEEeecCCCeEEEEecCC
Q 015301 363 WHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 363 ~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
|+.++..+.+.+++ .+.-|++.+
T Consensus 310 f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 310 FNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred ccCCCcccccccch-hhheeeccc
Confidence 88887766666654 456666654
No 285
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.34 E-value=3.1e-09 Score=101.83 Aligned_cols=268 Identities=14% Similarity=0.157 Sum_probs=155.9
Q ss_pred EEEEECCC-CCEEEEEeCCCcEEEEEcCCCeeeeeeeecc-----------cccceEEEEEeCCCCcEEEEEe-cCCEEE
Q 015301 44 YTSQFSND-GSFFVAASQESNIKVYNVDKNWKIQKDIETK-----------ALRWTITDTSLSPDQRFLVYAS-ICAIVN 110 (409)
Q Consensus 44 ~~~~~s~~-~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~~~~l~~~~-~dg~i~ 110 (409)
..++++++ +.++++-+.++.|++||.... .+....... ..-.....++++++++.|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788875 556666677888999998754 222221100 0112368899999888776664 457899
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCC---CcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCCeeeeEEcC----
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGD---EDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRIPA---- 182 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---- 182 (409)
++|..++......... ..+..+..... ..-.....++++| ++..+++.+.++.|++||..++.... +.+
T Consensus 650 ~id~~~~~V~tlag~G--~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~ 726 (1057)
T PLN02919 650 EIDFVNETVRTLAGNG--TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYE 726 (1057)
T ss_pred EEecCCCEEEEEeccC--cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCcc
Confidence 9998776532221100 00000000000 0011346799999 55556666678899999988765431 211
Q ss_pred -----------CCCCeEEEEEeCCCCc-EEEEeeCCCeEEEecccccccCCceeee-------------ee--------c
Q 015301 183 -----------HKSDVNTVCFADETGH-LIFSGSDDSLCKVWDRRCFISKGRANGV-------------LM--------G 229 (409)
Q Consensus 183 -----------~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------~~--------~ 229 (409)
.-.....++++ ++++ ++++-+.++.|++||+.. +..... +. .
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavs-pdG~~LYVADs~n~~Irv~D~~t----g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLS-PDLKELYIADSESSSIRALDLKT----GGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred ccCCCCccccccccCccEEEEe-CCCCEEEEEECCCCeEEEEECCC----CcEEEEEecccccCcccccccCCCCchhhh
Confidence 11245679999 6666 556666789999999752 111100 00 0
Q ss_pred cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccce
Q 015301 230 HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL 309 (409)
Q Consensus 230 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (409)
.......++++++|+.+++-..++.|++||..+.............. ..+...
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~------------------~dG~~~--------- 854 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGF------------------KDGKAL--------- 854 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCC------------------CCCccc---------
Confidence 11124588999999988888889999999987643221110000000 000000
Q ss_pred eeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce
Q 015301 310 RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 310 ~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~ 347 (409)
.........++++++|+++++-+.++.|++||+.+++.
T Consensus 855 ~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 855 KAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 00001123457888999999888999999999988765
No 286
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.34 E-value=2e-11 Score=105.23 Aligned_cols=296 Identities=17% Similarity=0.155 Sum_probs=183.8
Q ss_pred eeEEecCceeEeecc--ceEEEEeeecCCCceeecCC--CCeEEEEECCCC--CEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 6 EVNYSGRGRFSAADS--CHVLSRYLPVNGPWKVDGMN--SRVYTSQFSNDG--SFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 6 ~~~~s~dg~~~~~~~--~~~~~~~~~~~~~~~l~~h~--~~v~~~~~s~~~--~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
++..+|-|+-++..+ ...+..+.....+.....|. -.|-.+.|+|.. .+-++......-.+|++.........+
T Consensus 29 a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef 108 (1081)
T KOG0309|consen 29 AVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEF 108 (1081)
T ss_pred ceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEE
Confidence 456677776544333 33334433333333444444 347788898754 344444445567799987665555566
Q ss_pred ecccccceEEEEEeCCC-CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE
Q 015301 80 ETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 158 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (409)
...+|...|+.+.|+|. ...|++++.|-.+..||+++........ .... .....++|+-....++
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-~~w~-------------s~asqVkwnyk~p~vl 174 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-SSWR-------------SAASQVKWNYKDPNVL 174 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-eccc-------------ccCceeeecccCcchh
Confidence 77889999999999996 4678999999999999998875432111 1111 1367789988655666
Q ss_pred EEEecCeEEEEECCCC-eeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEE
Q 015301 159 AAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 237 (409)
+.+....|.+||.+.| .++..+++|...|..++|+......+.+.+.||+|+.||... ..+..........+|..-
T Consensus 175 asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k---St~e~~~~vtt~~piw~~ 251 (1081)
T KOG0309|consen 175 ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK---STTESKRTVTTNFPIWRG 251 (1081)
T ss_pred hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc---cccccceeccccCcceec
Confidence 6677788999999865 567788999999999999866677899999999999999752 222222223344566666
Q ss_pred EEcCCCC--eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEE
Q 015301 238 DSRRDGR--YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRC 315 (409)
Q Consensus 238 ~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (409)
.+.|-|+ ++.-.-.+..+.+++.++....... .....++..|.||..... ..
T Consensus 252 r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~------------------------~~~~~pVh~F~GH~D~V~--eF 305 (1081)
T KOG0309|consen 252 RYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNV------------------------FDLNTPVHTFVGHDDVVL--EF 305 (1081)
T ss_pred cccccCceeEeccccCCeeeeeccccchhhhhcc------------------------ccCCcceeeecCcchHHH--HH
Confidence 6666443 2222222234444444432111000 011356788888864221 11
Q ss_pred EEe------eeecCCCCEEEEEeCCCeEEEEEccC
Q 015301 316 YFS------PEYSTAQKYIYTGSSDNSVYIYDLVS 344 (409)
Q Consensus 316 ~~~------~~~s~~~~~l~~~~~dg~v~i~d~~~ 344 (409)
.|. -++....-.|++=+.|..+++|.+.+
T Consensus 306 lWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 306 LWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred hhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 110 01222234689999999999998854
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.33 E-value=8.2e-09 Score=79.64 Aligned_cols=245 Identities=15% Similarity=0.155 Sum_probs=136.7
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCee--eeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccc
Q 015301 45 TSQFSNDGSFFVAASQESNIKVYNVDKNWK--IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESL 122 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~ 122 (409)
.++.+++|++||.. .|..|.|=...++.. +.+....+...-.=..++||||+..||.+...|+|+++|+...+.-..
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 35678899988876 466777776655421 112111222222457799999999999999999999999986543222
Q ss_pred cceeceeeeeeeecCCCCcceeeEEEEEcCCC------CeEEEEEecCeEEEEECCCC-----eeeeEE---cCCCCCeE
Q 015301 123 ANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG------QELVAAGSDNFIYVYDLQAN-----KCSLRI---PAHKSDVN 188 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~~d~~i~v~d~~~~-----~~~~~~---~~~~~~v~ 188 (409)
..... +.. .-...|..+.|.+.. ..|++-...|.++-|-+..+ +....+ ..+...|+
T Consensus 81 ~p~~~------~~~---d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~ 151 (282)
T PF15492_consen 81 PPAMS------FPG---DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGIN 151 (282)
T ss_pred Ccccc------cCC---ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCcee
Confidence 11110 111 123357777776522 24666667888887765322 222222 23467899
Q ss_pred EEEEeCCCCcEEEEeeCCCe-EEEecccccccCCceeeeeeccccceeEEEEcCCCC-e-EEEEeCCCc------EEEee
Q 015301 189 TVCFADETGHLIFSGSDDSL-CKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR-Y-FISNGKDQT------TKLWD 259 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~-l~~~~~dg~------i~iwd 259 (409)
++.|+ +..++|++|+.... -..+. +....+++-..-.+.. + .++...|+. ..+|.
T Consensus 152 ~~vy~-p~h~LLlVgG~~~~~~~~s~---------------a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~ 215 (282)
T PF15492_consen 152 SAVYH-PKHRLLLVGGCEQNQDGMSK---------------ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLR 215 (282)
T ss_pred EEEEc-CCCCEEEEeccCCCCCcccc---------------ccccCceEEEEcCCCCcEEEccccCccccccccccceee
Confidence 99999 66677776654321 00000 1111222221111111 1 111111211 11222
Q ss_pred CCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEE
Q 015301 260 IRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYI 339 (409)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i 339 (409)
+-+ +..+... ......++.+..||||++||+...+|.|.+
T Consensus 216 ~~~-------------------------------------~~~fs~~---~~~~d~i~kmSlSPdg~~La~ih~sG~lsL 255 (282)
T PF15492_consen 216 IPS-------------------------------------FKFFSRQ---GQEQDGIFKMSLSPDGSLLACIHFSGSLSL 255 (282)
T ss_pred ccc-------------------------------------eeeeecc---ccCCCceEEEEECCCCCEEEEEEcCCeEEE
Confidence 111 1111100 112255678899999999999999999999
Q ss_pred EEccCCceEEEeccCC
Q 015301 340 YDLVSGAQVAKLDFHN 355 (409)
Q Consensus 340 ~d~~~~~~~~~~~~~~ 355 (409)
|++.+.++...+.-++
T Consensus 256 W~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 256 WEIPSLRLQRSWKQDE 271 (282)
T ss_pred EecCcchhhcccchhh
Confidence 9999988877765443
No 288
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.3e-08 Score=87.95 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=93.4
Q ss_pred eEEEEEeCCCCcE-EEEEec---CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe
Q 015301 87 TITDTSLSPDQRF-LVYASI---CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 87 ~v~~~~~s~~~~~-l~~~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (409)
......|+|||+. ++..+. +..|.++|+.+++......... ......|+|||+.++....
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g----------------~~~~~~~SPDG~~la~~~~ 252 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG----------------MLVVSDVSKDGSKLLLTMA 252 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC----------------cEEeeEECCCCCEEEEEEc
Confidence 5778999999985 665443 3578999998876544432111 2456779999987765533
Q ss_pred ---cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee-CCC--eEEEecccccccCCceeeeeeccccceeE
Q 015301 163 ---DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDS--LCKVWDRRCFISKGRANGVLMGHLEGITF 236 (409)
Q Consensus 163 ---d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 236 (409)
+..|.++|+.+++.. .+..+........|+ |+++.|+..+ ..+ .|.+.|+. .+....... ... ..
T Consensus 253 ~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~S-PDG~~I~F~Sdr~g~~~Iy~~dl~----~g~~~rlt~-~g~--~~ 323 (419)
T PRK04043 253 PKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFV-EDDKRIVFVSDRLGYPNIFMKKLN----SGSVEQVVF-HGK--NN 323 (419)
T ss_pred cCCCcEEEEEECCCCcEE-EcccCCCccCccEEC-CCCCEEEEEECCCCCceEEEEECC----CCCeEeCcc-CCC--cC
Confidence 357889998887644 343344334556899 7787666554 344 45666643 333322221 111 12
Q ss_pred EEEcCCCCeEEEEeCC---------CcEEEeeCCC
Q 015301 237 IDSRRDGRYFISNGKD---------QTTKLWDIRK 262 (409)
Q Consensus 237 ~~~~~~~~~l~~~~~d---------g~i~iwd~~~ 262 (409)
..|+|+|+.|+..... ..|.+.|+.+
T Consensus 324 ~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~ 358 (419)
T PRK04043 324 SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS 358 (419)
T ss_pred ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC
Confidence 4899999988877653 2566666654
No 289
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.27 E-value=4e-08 Score=79.40 Aligned_cols=222 Identities=16% Similarity=0.153 Sum_probs=138.5
Q ss_pred EEEeCC-CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEc-CCCCeEEEEEecCeEE
Q 015301 90 DTSLSP-DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFS-TDGQELVAAGSDNFIY 167 (409)
Q Consensus 90 ~~~~s~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~ 167 (409)
++.|.+ ++.++++-...+.|..|+..++........ ....+++. +++. |+++.. +.+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~------------------~~~G~~~~~~~g~-l~v~~~-~~~~ 63 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLP------------------GPNGMAFDRPDGR-LYVADS-GGIA 63 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESS------------------SEEEEEEECTTSE-EEEEET-TCEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecC------------------CCceEEEEccCCE-EEEEEc-CceE
Confidence 567888 666666666789999999988765321110 25566777 5654 555554 4466
Q ss_pred EEECCCCeeeeEEcC-----CCCCeEEEEEeCCCCcEEEEeeCC--------CeEEEecccccccCCceeeeeeccccce
Q 015301 168 VYDLQANKCSLRIPA-----HKSDVNTVCFADETGHLIFSGSDD--------SLCKVWDRRCFISKGRANGVLMGHLEGI 234 (409)
Q Consensus 168 v~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~v 234 (409)
++|..+++....... .....+.+++. +++++.++.... |.|..++. . .............
T Consensus 64 ~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd-~~G~ly~t~~~~~~~~~~~~g~v~~~~~-----~-~~~~~~~~~~~~p 136 (246)
T PF08450_consen 64 VVDPDTGKVTVLADLPDGGVPFNRPNDVAVD-PDGNLYVTDSGGGGASGIDPGSVYRIDP-----D-GKVTVVADGLGFP 136 (246)
T ss_dssp EEETTTTEEEEEEEEETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEET-----T-SEEEEEEEEESSE
T ss_pred EEecCCCcEEEEeeccCCCcccCCCceEEEc-CCCCEEEEecCCCccccccccceEEECC-----C-CeEEEEecCcccc
Confidence 669988865443322 34567899999 788877775543 44666663 2 2233333445667
Q ss_pred eEEEEcCCCCeEE-EEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeee
Q 015301 235 TFIDSRRDGRYFI-SNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLI 313 (409)
Q Consensus 235 ~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (409)
+.++|+|+++.|+ +-+..+.|..+++......... .+.+..+....
T Consensus 137 NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~------ 183 (246)
T PF08450_consen 137 NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN---------------------------RRVFIDFPGGP------ 183 (246)
T ss_dssp EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE---------------------------EEEEEE-SSSS------
T ss_pred cceEECCcchheeecccccceeEEEeccccccceee---------------------------eeeEEEcCCCC------
Confidence 8999999998776 5566788888888642210000 00011111111
Q ss_pred EEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEe-cCcCeEEe
Q 015301 314 RCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWH-PIYPMLIS 372 (409)
Q Consensus 314 ~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s 372 (409)
...-.++++.+|++.++....+.|.+++.+ |+.+..+......+++++|. ++.+.|+.
T Consensus 184 g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 184 GYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp CEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred cCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence 112234677889988888889999999986 99888887666689999994 56564443
No 290
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.4e-10 Score=92.13 Aligned_cols=289 Identities=12% Similarity=0.063 Sum_probs=183.4
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec-CCEEEEEEcCCC
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI-CAIVNIVDVGSS 117 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~~w~~~~~ 117 (409)
|.+.|+.+.-+ ..+++.+++.||.++.|.-..-..+.-......|-..|.+++.+-++..+.+.+. |..++++|+.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 67777777655 4679999999999999986543334444456677778999999999999999777 999999999876
Q ss_pred ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC--CeEEEE-EecCeEEEEECCCCe--eeeEEcCCCCCeEEEEE
Q 015301 118 ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG--QELVAA-GSDNFIYVYDLQANK--CSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~-~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~ 192 (409)
............. ..+...++.. ..+++. -.++.+.++|-.... ....-.-|..+|.++.+
T Consensus 87 DminmiKL~~lPg--------------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y 152 (558)
T KOG0882|consen 87 DMINMIKLVDLPG--------------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRY 152 (558)
T ss_pred chhhhcccccCCC--------------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEe
Confidence 6543333332211 1111122211 133333 347899999975443 22333569999999999
Q ss_pred eCCCCcEEEEeeCCCeEEEeccccccc--CC---------ceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFIS--KG---------RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
+ +.+..+++....|.|.-|......+ .. ..+..+........++.|+|++..+.+-+.|..|++++++
T Consensus 153 ~-qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~K 231 (558)
T KOG0882|consen 153 N-QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFK 231 (558)
T ss_pred e-ccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEec
Confidence 9 8888999999999999999641000 00 1111122334567899999999999999999999999999
Q ss_pred CCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEE
Q 015301 262 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d 341 (409)
++...+............... .+.-....+.. .-..-+.++.+.. .......|+..|++|+.|+-=| |++.+
T Consensus 232 tGklvqeiDE~~t~~~~q~ks-~y~l~~VelgR-Rmaverelek~~~-----~~~~~~~fdes~~flly~t~~g-ikvin 303 (558)
T KOG0882|consen 232 TGKLVQEIDEVLTDAQYQPKS-PYGLMHVELGR-RMAVERELEKHGS-----TVGTNAVFDESGNFLLYGTILG-IKVIN 303 (558)
T ss_pred cchhhhhhhccchhhhhcccc-ccccceeehhh-hhhHHhhHhhhcC-----cccceeEEcCCCCEEEeeccee-EEEEE
Confidence 977666655443333322211 00000000000 0000011111211 1122345777899999998776 89999
Q ss_pred ccCCceEEEe
Q 015301 342 LVSGAQVAKL 351 (409)
Q Consensus 342 ~~~~~~~~~~ 351 (409)
+.++.....+
T Consensus 304 ~~tn~v~ri~ 313 (558)
T KOG0882|consen 304 LDTNTVVRIL 313 (558)
T ss_pred eecCeEEEEe
Confidence 9888776654
No 291
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.26 E-value=1.4e-10 Score=92.82 Aligned_cols=164 Identities=21% Similarity=0.224 Sum_probs=112.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCC---EEEEEEcCCCc
Q 015301 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA---IVNIVDVGSSA 118 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~~w~~~~~~ 118 (409)
.+..+..+|++++||++..+....++++.......+...........+++.|..+.....++..-| .+.+|....+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 344566788999999998888877877765533222222222222455566666655555554444 44555544333
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE-cCCCCCeEEEEEeCCCC
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI-PAHKSDVNTVCFADETG 197 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~ 197 (409)
..... +|-..++.++|+||+++|+++..|..|++-.....-.+..+ -+|+..|..++.. ++
T Consensus 144 ~~~~l----------------GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~--~~ 205 (390)
T KOG3914|consen 144 CEPIL----------------GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT--DN 205 (390)
T ss_pred cchhh----------------hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec--cC
Confidence 22211 45557999999999999999999999999888766555554 5799999999997 45
Q ss_pred cEEEEeeCCCeEEEecccccccCCceeeee
Q 015301 198 HLIFSGSDDSLCKVWDRRCFISKGRANGVL 227 (409)
Q Consensus 198 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 227 (409)
..|++++.|+++++||++ +++.+..+
T Consensus 206 ~~LlS~sGD~tlr~Wd~~----sgk~L~t~ 231 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDIT----SGKLLDTC 231 (390)
T ss_pred ceeeecCCCCcEEEEecc----cCCccccc
Confidence 669999999999999976 66655443
No 292
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=4e-11 Score=94.02 Aligned_cols=167 Identities=20% Similarity=0.311 Sum_probs=124.6
Q ss_pred EEcC--CCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeee
Q 015301 149 KFST--DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV 226 (409)
Q Consensus 149 ~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 226 (409)
+|+- .|-. ++.+.+-.|.+-|++++... .+. ..+.|.++.|. ..+++++.|..+|.|..+|+|+..........
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~-~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFA-GSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhc-ccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 5543 2334 34445677889999887543 344 57889999998 78999999999999999999965333333333
Q ss_pred eeccccceeEEEEcC-CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeec
Q 015301 227 LMGHLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG 305 (409)
Q Consensus 227 ~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (409)
..-|...|+++..-. ++++|++.+.+|.|++||++..++ ...+..+++
T Consensus 294 rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~-------------------------------~~~V~qYeG 342 (425)
T KOG2695|consen 294 RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC-------------------------------KKSVMQYEG 342 (425)
T ss_pred EEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc-------------------------------ccceeeeec
Confidence 445888999988766 788999999999999999998443 234778888
Q ss_pred ccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccC
Q 015301 306 HSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH 354 (409)
Q Consensus 306 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 354 (409)
|......... -..+....+++++.|...+||.++.+..+.+++..
T Consensus 343 HvN~~a~l~~----~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 343 HVNLSAYLPA----HVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cccccccccc----ccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 8755443322 23455778888999999999999999999988744
No 293
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=1.4e-08 Score=87.62 Aligned_cols=199 Identities=12% Similarity=0.045 Sum_probs=120.8
Q ss_pred CceeecCCCCeEEEEECCCCCE-EEEEeC---CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe-c--
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSF-FVAASQ---ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-I-- 105 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~-l~t~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-- 105 (409)
+..+.... .+....|||||+. ++..+. +..|+++|+.+++.. ......+ ......|+|||+.|+... .
T Consensus 181 ~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-~lt~~~g---~~~~~~~SPDG~~la~~~~~~g 255 (419)
T PRK04043 181 QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-KIASSQG---MLVVSDVSKDGSKLLLTMAPKG 255 (419)
T ss_pred eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-EEecCCC---cEEeeEECCCCCEEEEEEccCC
Confidence 34344333 7889999999985 554443 356889999887433 2222222 456678999998877553 2
Q ss_pred CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec---CeEEEEECCCCeeeeEEcC
Q 015301 106 CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD---NFIYVYDLQANKCSLRIPA 182 (409)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~ 182 (409)
+..|.++++.+++......... ......|+|||+.|+..+.. ..|+++|+.+++..+....
T Consensus 256 ~~~Iy~~dl~~g~~~~LT~~~~----------------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~ 319 (419)
T PRK04043 256 QPDIYLYDTNTKTLTQITNYPG----------------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH 319 (419)
T ss_pred CcEEEEEECCCCcEEEcccCCC----------------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC
Confidence 3568888887765433222111 12345799999988877642 2788899988776443321
Q ss_pred CCCCeEEEEEeCCCCcEEEEeeCC---------CeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC
Q 015301 183 HKSDVNTVCFADETGHLIFSGSDD---------SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ 253 (409)
Q Consensus 183 ~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 253 (409)
... ...|+ |+++.|+..... ..|.+.|+. .+. ...+... .......|+|||+.++....++
T Consensus 320 -g~~--~~~~S-PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~----~g~-~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~ 389 (419)
T PRK04043 320 -GKN--NSSVS-TYKNYIVYSSRETNNEFGKNTFNLYLISTN----SDY-IRRLTAN-GVNQFPRFSSDGGSIMFIKYLG 389 (419)
T ss_pred -CCc--CceEC-CCCCEEEEEEcCCCcccCCCCcEEEEEECC----CCC-eEECCCC-CCcCCeEECCCCCEEEEEEccC
Confidence 111 24899 788877766543 257777753 232 2333322 2334588999999887765432
Q ss_pred ---cEEEeeCCC
Q 015301 254 ---TTKLWDIRK 262 (409)
Q Consensus 254 ---~i~iwd~~~ 262 (409)
.+.+.++..
T Consensus 390 ~~~~L~~~~l~g 401 (419)
T PRK04043 390 NQSALGIIRLNY 401 (419)
T ss_pred CcEEEEEEecCC
Confidence 345555543
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.22 E-value=4.9e-10 Score=89.85 Aligned_cols=161 Identities=17% Similarity=0.207 Sum_probs=110.4
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcc-ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec--
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSAR-ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-- 163 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 163 (409)
.+..+..++++++||++..+....++++..... ......... ....+++.|..+.....++...
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-------------~~~~~ai~~~~~~~sv~v~dkagD 130 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-------------PKRPTAISFIREDTSVLVADKAGD 130 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-------------ccCcceeeeeeccceEEEEeecCC
Confidence 345566788899999998888887888765543 111111000 0023445555555555555444
Q ss_pred -CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC
Q 015301 164 -NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD 242 (409)
Q Consensus 164 -~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 242 (409)
..+.+|....+.+ ..+-+|-+.+++++++ +|+.+|+++..|..|++-... .....-....+|..-|..++.-+
T Consensus 131 ~~~~di~s~~~~~~-~~~lGhvSml~dVavS-~D~~~IitaDRDEkIRvs~yp---a~f~IesfclGH~eFVS~isl~~- 204 (390)
T KOG3914|consen 131 VYSFDILSADSGRC-EPILGHVSMLLDVAVS-PDDQFIITADRDEKIRVSRYP---ATFVIESFCLGHKEFVSTISLTD- 204 (390)
T ss_pred ceeeeeecccccCc-chhhhhhhhhheeeec-CCCCEEEEecCCceEEEEecC---cccchhhhccccHhheeeeeecc-
Confidence 4455555554443 3356899999999999 899999999999999997753 23333344567999999999886
Q ss_pred CCeEEEEeCCCcEEEeeCCCCccc
Q 015301 243 GRYFISNGKDQTTKLWDIRKMSSN 266 (409)
Q Consensus 243 ~~~l~~~~~dg~i~iwd~~~~~~~ 266 (409)
+..|++++.|++|++||++++.+.
T Consensus 205 ~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 205 NYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred CceeeecCCCCcEEEEecccCCcc
Confidence 455899999999999999996654
No 295
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.21 E-value=5.3e-09 Score=79.53 Aligned_cols=194 Identities=16% Similarity=0.088 Sum_probs=129.0
Q ss_pred CCCeEEEEEecCeEEEEECCCCeeee-EEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccc
Q 015301 153 DGQELVAAGSDNFIYVYDLQANKCSL-RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL 231 (409)
Q Consensus 153 ~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 231 (409)
...+|+.|+..|...+|...+.+... ....|...|+-+.-.-.....+..++.|.++++.++. ...... ..|.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~----~~s~~~--~~h~ 156 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVS----GDSNKF--AVHN 156 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEe----cCcccc--eeec
Confidence 44578999999999999998665432 2334444443222111223446677889999998864 111111 1233
Q ss_pred c--ceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccce
Q 015301 232 E--GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL 309 (409)
Q Consensus 232 ~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (409)
. .+.+++++++++++++.+....|..|.+...... .+.......
T Consensus 157 ~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey--------------------------------~~~~~~a~t-- 202 (344)
T KOG4532|consen 157 QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY--------------------------------IENIYEAPT-- 202 (344)
T ss_pred cccceeeeEEcCCCceEEEecCCCcceEEEeCCccce--------------------------------eeeeEeccc--
Confidence 2 3788999999999999999999999998763211 111111111
Q ss_pred eeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceE-E----EeccCCcceeeeEEecCcC--eEEeecCCCeEEEE
Q 015301 310 RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV-A----KLDFHNAPVRDCCWHPIYP--MLISSSWDCNIVRW 382 (409)
Q Consensus 310 ~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~-~----~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iw 382 (409)
...-|...|+.....+|++..||++.|||++..... . +-..|.+.+..+.|++-|. +|+..-.-+.+.+-
T Consensus 203 ---~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~ 279 (344)
T KOG4532|consen 203 ---SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVV 279 (344)
T ss_pred ---CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEE
Confidence 122355578888899999999999999999875432 2 2245889999999998766 45444445789999
Q ss_pred ecCCCcc
Q 015301 383 EIPGIGE 389 (409)
Q Consensus 383 ~~~~~~~ 389 (409)
|+.+...
T Consensus 280 D~R~~~~ 286 (344)
T KOG4532|consen 280 DTRNYVN 286 (344)
T ss_pred EcccCce
Confidence 9988654
No 296
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=1.7e-10 Score=96.55 Aligned_cols=250 Identities=12% Similarity=0.110 Sum_probs=162.3
Q ss_pred eeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeE
Q 015301 78 DIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157 (409)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 157 (409)
.....+|...|..++--.+.+.+++++.|.+|++|.++.......... ..-....|..+|.++.|..+.+++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsa--------CQfTY~aHkk~i~~igfL~~lr~i 799 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSA--------CQFTYQAHKKPIHDIGFLADLRSI 799 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccce--------eeeEhhhccCcccceeeeecccee
Confidence 344567777888887777788899999999999999975432211110 111113566789999999998888
Q ss_pred EEEEecCeEEEEECCCCeeeeEEc--CCCCCeEEEEEeCC-CCcEEEEe-eCCCeEEEecccccccCCceeeee-----e
Q 015301 158 VAAGSDNFIYVYDLQANKCSLRIP--AHKSDVNTVCFADE-TGHLIFSG-SDDSLCKVWDRRCFISKGRANGVL-----M 228 (409)
Q Consensus 158 ~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~-----~ 228 (409)
+++ ||.|.+||.--++++..+. ...+.+..+...|. +..++.+| +...+|+++|.| .......+ .
T Consensus 800 ~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaR----sce~~~E~kVcna~ 873 (1034)
T KOG4190|consen 800 ASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDAR----SCEWTCELKVCNAP 873 (1034)
T ss_pred eec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecc----cccceeeEEeccCC
Confidence 765 7899999987777665331 12233444444422 34444444 788899999977 33333332 3
Q ss_pred ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccc
Q 015301 229 GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV 308 (409)
Q Consensus 229 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (409)
+.+..+.+++..+.|+.++++-..|+|.+.|.+++. .+..++....
T Consensus 874 ~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~----------------------------------vINswrpmec 919 (1034)
T KOG4190|consen 874 GPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK----------------------------------VINSWRPMEC 919 (1034)
T ss_pred CCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc----------------------------------eeccCCcccc
Confidence 345668899999999999999999999999999843 3333332210
Q ss_pred eeeeeEEEEeeeecCCCCEEEEEeCCCeEEE-EEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 309 LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYI-YDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 309 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i-~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
-...+ -.|..+.|+....|.++.+ |..-++....+.+....+..-+. .-|..|+++.....+.+|.-
T Consensus 920 ------dllql-aapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflq--svgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 920 ------DLLQL-AAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQ--SVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred ------hhhhh-cCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhh--ccCceeEEeccCcEEEEEec
Confidence 00011 1234567777778888888 88777766666654444333222 23566788777677777753
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.18 E-value=9.2e-10 Score=85.43 Aligned_cols=271 Identities=15% Similarity=0.169 Sum_probs=163.4
Q ss_pred ceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcc---ccccceeceeeeeeeecCCCCcceeeEEEEEcCCC--CeEEEE
Q 015301 86 WTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR---ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG--QELVAA 160 (409)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~ 160 (409)
..|+++.|...|.+|++|...|.|.+|.-..... ......+.....+.+... -.-...|..+.|..++ ..++..
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkS-leieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKS-LEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhh-ccHHHHhhheeeecCCCcceEEEe
Confidence 3699999999999999999999999997654431 101111111101000000 0112357888887644 356677
Q ss_pred EecCeEEEEECCCCe-------------------e------------------e-----eEE-cCCCCCeEEEEEeCCCC
Q 015301 161 GSDNFIYVYDLQANK-------------------C------------------S-----LRI-PAHKSDVNTVCFADETG 197 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~-------------------~------------------~-----~~~-~~~~~~v~~~~~~~~~~ 197 (409)
+.|.+|++|.+.... + + +.. ..|...+.++.++ .+.
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N-sD~ 184 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN-SDK 184 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec-Cch
Confidence 789999999875320 0 0 001 2567778899998 676
Q ss_pred cEEEEeeCCCeEEEecccccccCCceeeeeecc-----ccceeEEEEcCC-CCeEEEEeCCCcEEEeeCCCCcccccccc
Q 015301 198 HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH-----LEGITFIDSRRD-GRYFISNGKDQTTKLWDIRKMSSNTTDNS 271 (409)
Q Consensus 198 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 271 (409)
..++++ .|=.|.+|++......... ..++.| ..-|++..|+|. ...+...+..|.|++-|++....-.....
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnI-VDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNI-VDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heeeec-cceeeeeccccccCCceEE-EeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 666664 5678999997632222222 222333 346788889985 45666777889999999985211000000
Q ss_pred cccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC-ceEEE
Q 015301 272 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG-AQVAK 350 (409)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~-~~~~~ 350 (409)
+. .....-..+.....++..+....|+++|+++++-+. -+|+|||++.. .++.+
T Consensus 263 --------------------lf----e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikT 317 (460)
T COG5170 263 --------------------LF----ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKT 317 (460)
T ss_pred --------------------hh----hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCcee
Confidence 00 000000011112233344556689999999988654 57999999764 56777
Q ss_pred eccCC------------cce---eeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 351 LDFHN------------APV---RDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 351 ~~~~~------------~~v---~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
+..|. ..| ..+.||.|.+.+.+|+..+..-++-..
T Consensus 318 i~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 318 IPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred echHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 75442 223 347888888899999988887777643
No 298
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.17 E-value=2.9e-10 Score=85.77 Aligned_cols=168 Identities=10% Similarity=0.078 Sum_probs=106.7
Q ss_pred CCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe-----c
Q 015301 31 NGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-----I 105 (409)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~ 105 (409)
.+.+.+..|.++-.+-+.+-.++.++++..||.+.+.+.+....+....... |. .-.+.+....++.+.++. .
T Consensus 80 ~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~-~~-~~as~~~~~~~~~i~s~~~g~~n~ 157 (319)
T KOG4714|consen 80 DPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSI-HS-GSASRKICRHGNSILSGGCGNWNA 157 (319)
T ss_pred CceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccc-cc-cccccceeecccEEecCCcceEee
Confidence 3344555666655555556567789999999999999987532222111110 10 111222233444444432 1
Q ss_pred CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCeee-eEEcCC
Q 015301 106 CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCS-LRIPAH 183 (409)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~-~~~~~~ 183 (409)
-+..+.|+++..+....... . ...|.+++-+|. .+.+++|+.||.+-+||.++.... ..+..|
T Consensus 158 ~d~~~a~~~~p~~t~~~~~~--------------~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah 222 (319)
T KOG4714|consen 158 QDNFYANTLDPIKTLIPSKK--------------A-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAH 222 (319)
T ss_pred ccceeeeccccccccccccc--------------c-cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHh
Confidence 23345555543322111110 0 113888998984 556777888999999999887543 345789
Q ss_pred CCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 184 KSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 184 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
..++..+-|+|.++..|+++++||.+..||..
T Consensus 223 k~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 223 KAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred hhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 99999999999999999999999999999954
No 299
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.10 E-value=7.1e-09 Score=92.05 Aligned_cols=182 Identities=16% Similarity=0.184 Sum_probs=131.9
Q ss_pred CCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccc
Q 015301 153 DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE 232 (409)
Q Consensus 153 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 232 (409)
++..++.|+....+..+|+.+.+..+...-..+.|+-|.. +++.+++|...|+|.+-|.+ +.+.++.+..|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~----s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPN----SFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCC----cCceeeeeecccc
Confidence 4556788888888999999988877766544545666664 58899999999999999975 8889999999999
Q ss_pred ceeEEEEcCCCCeEEEEeC---------CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeee
Q 015301 233 GITFIDSRRDGRYFISNGK---------DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY 303 (409)
Q Consensus 233 ~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (409)
.|..+.. .|+.|++++. |.-|++||+|++........ .
T Consensus 219 siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~-------------------------------~ 265 (1118)
T KOG1275|consen 219 SISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF-------------------------------P 265 (1118)
T ss_pred ceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccc-------------------------------c
Confidence 9987766 4888998874 55689999998654332211 0
Q ss_pred ecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc---CC-ceEEEeccCCcceeeeEEecCcCeEEeecCCCeE
Q 015301 304 KGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV---SG-AQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNI 379 (409)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~---~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 379 (409)
.+.. -..+.|.+ ...+++.+..|...+-|.. +. ..+..+......+..+.+|++++.|+.+..+|.|
T Consensus 266 ~~P~------flrf~Psl---~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v 336 (1118)
T KOG1275|consen 266 YGPQ------FLRFHPSL---TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHV 336 (1118)
T ss_pred cCch------hhhhcccc---cceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcE
Confidence 1100 00011111 2468888889999999833 22 1233333344569999999999999999999999
Q ss_pred EEEe
Q 015301 380 VRWE 383 (409)
Q Consensus 380 ~iw~ 383 (409)
.+|.
T Consensus 337 ~~wa 340 (1118)
T KOG1275|consen 337 NLWA 340 (1118)
T ss_pred eeec
Confidence 9998
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.09 E-value=2.2e-06 Score=69.26 Aligned_cols=219 Identities=20% Similarity=0.180 Sum_probs=135.1
Q ss_pred ceeeEEec-CceeEeec-cceEEEEeeecCCCceeecCCCCeEEEEEC-CCCCEEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 4 GREVNYSG-RGRFSAAD-SCHVLSRYLPVNGPWKVDGMNSRVYTSQFS-NDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 4 ~~~~~~s~-dg~~~~~~-~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s-~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
.+...|.+ +|.+..++ ....+.++.+............ ...+++. +++.+++ +..++ +.++|..++.. .....
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l~v-~~~~~-~~~~d~~~g~~-~~~~~ 77 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRLYV-ADSGG-IAVVDPDTGKV-TVLAD 77 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEEEE-EETTC-EEEEETTTTEE-EEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCCEEEE-EEcCc-eEEEecCCCcE-EEEee
Confidence 35678887 77766654 3445555555555443333333 6777777 6765544 44444 66669888733 33222
Q ss_pred c--cc-ccceEEEEEeCCCCcEEEEEecC--------CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEE
Q 015301 81 T--KA-LRWTITDTSLSPDQRFLVYASIC--------AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVK 149 (409)
Q Consensus 81 ~--~~-~~~~v~~~~~s~~~~~l~~~~~d--------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (409)
. .. ....++.+++.|+|++.++.... |.|..++.. ++........ ...+.++
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~----------------~~pNGi~ 140 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL----------------GFPNGIA 140 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE----------------SSEEEEE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc----------------ccccceE
Confidence 2 11 34578999999999977766533 557777766 3322221111 1378899
Q ss_pred EcCCCCeEEEE-EecCeEEEEECCCCee-------eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCC
Q 015301 150 FSTDGQELVAA-GSDNFIYVYDLQANKC-------SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG 221 (409)
Q Consensus 150 ~~~~~~~l~~~-~~d~~i~v~d~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 221 (409)
|+|+++.|+++ +..+.|..+++..... ...+....+..-.+++. .++++.++....+.|.++|. .+
T Consensus 141 ~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD-~~G~l~va~~~~~~I~~~~p-----~G 214 (246)
T PF08450_consen 141 FSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD-SDGNLWVADWGGGRIVVFDP-----DG 214 (246)
T ss_dssp EETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB-TTS-EEEEEETTTEEEEEET-----TS
T ss_pred ECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc-CCCCEEEEEcCCCEEEEECC-----Cc
Confidence 99999977654 4578899999853221 11222222347789998 88998888888899999994 46
Q ss_pred ceeeeeeccccceeEEEEc-CCCCeEEEE
Q 015301 222 RANGVLMGHLEGITFIDSR-RDGRYFISN 249 (409)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~-~~~~~l~~~ 249 (409)
+.+..+......+++++|. ++.+.|+..
T Consensus 215 ~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 215 KLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp CEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred cEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 6677666665688999994 565555443
No 301
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.08 E-value=4.7e-10 Score=61.22 Aligned_cols=39 Identities=28% Similarity=0.464 Sum_probs=36.9
Q ss_pred CceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 345 GAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 345 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
++++.++++|.+.|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=8.3e-10 Score=86.83 Aligned_cols=149 Identities=17% Similarity=0.296 Sum_probs=110.3
Q ss_pred EEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC-----e
Q 015301 101 VYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-----K 175 (409)
Q Consensus 101 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-----~ 175 (409)
++.+.+..+-+-|++++....... ...|.++.|...++++..|+.+|.|..+|++.+ .
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~s-----------------ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~ 290 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQS-----------------KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGW 290 (425)
T ss_pred ecccccceeEEEEeeccccccccc-----------------chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCc
Confidence 445556778888888876543332 224888999998999999999999999999765 3
Q ss_pred eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEE--EcCCCCeEEEEeCCC
Q 015301 176 CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID--SRRDGRYFISNGKDQ 253 (409)
Q Consensus 176 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~dg 253 (409)
+...+ .|.+.|+++....-++..|++.+.+|+|++||+|.. ..+.-+....+|...-.-+- ..+....+++++.|-
T Consensus 291 ~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~-K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDc 368 (425)
T KOG2695|consen 291 CAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT-KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDC 368 (425)
T ss_pred ceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhh-hcccceeeeecccccccccccccccccceEEEccCee
Confidence 34444 489999999988447889999999999999999831 22334777788865433333 455667888899999
Q ss_pred cEEEeeCCCCccccc
Q 015301 254 TTKLWDIRKMSSNTT 268 (409)
Q Consensus 254 ~i~iwd~~~~~~~~~ 268 (409)
..+||.++.+....+
T Consensus 369 ytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 369 YTRIWSLDSGHLLCT 383 (425)
T ss_pred EEEEEecccCceeec
Confidence 999999997544333
No 303
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=1.7e-08 Score=88.17 Aligned_cols=274 Identities=12% Similarity=0.042 Sum_probs=173.7
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCC------------cEEEEEecCC
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ------------RFLVYASICA 107 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------------~~l~~~~~dg 107 (409)
...-.++.|+|.| ++|-|+. ..|.+-|..+-+.++. ...|...|+.+.|.|.. -.||++...|
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqs---ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQS---IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhhhhhc---cccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3446788999977 5666654 5688888776544443 34455689999998731 2577788889
Q ss_pred EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC---CC-CeEEEEEecCeEEEEECCCCeeeeEEcCC
Q 015301 108 IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST---DG-QELVAAGSDNFIYVYDLQANKCSLRIPAH 183 (409)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 183 (409)
.|.+||........... .+..++..++|-+ +. ..|++-.....+.+|+..+|+........
T Consensus 90 rIil~d~~~~s~~~~l~---------------~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys 154 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLS---------------HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS 154 (1062)
T ss_pred cEEEEEehhhhhhhhhc---------------CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC
Confidence 99999998775543332 2233578888876 33 45666666789999999999999888777
Q ss_pred CCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 184 KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 184 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
.....|+.+.|-+...+..-+..|.+.+-+.- +.......+|.-.|++=.-++......++.. +..+
T Consensus 155 ~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l-----~~sep~~pgk~~qI~sd~Sdl~~lere~at~-------ns~t- 221 (1062)
T KOG1912|consen 155 HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL-----GLSEPDVPGKEFQITSDHSDLAHLERETATG-------NSTT- 221 (1062)
T ss_pred CcceeeeeeCCCCcceEEEEccCceEEEEecc-----CCCCCCCCceeEEEecCccchhhhhhhhhcc-------cccc-
Confidence 77888899998788888887888888877742 1111111122222221111111111111111 0000
Q ss_pred cccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 264 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
.+.. ....-++ +...+|+|.-+-++.......+.++|++
T Consensus 222 s~~~-----------------------------sa~fity------------~a~faf~p~~rn~lfi~~prellv~dle 260 (1062)
T KOG1912|consen 222 STPA-----------------------------SAYFITY------------CAQFAFSPHWRNILFITFPRELLVFDLE 260 (1062)
T ss_pred CCCc-----------------------------chhHHHH------------HHhhhcChhhhceEEEEeccceEEEcch
Confidence 0000 0000000 1122456655555555567789999999
Q ss_pred CCceEEEeccCCcceeeeEEecCcC--eEEeecCCCeEEEEecCCC
Q 015301 344 SGAQVAKLDFHNAPVRDCCWHPIYP--MLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 344 ~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iw~~~~~ 387 (409)
-..++....-..+.+.-+.|-|+.+ .|+..-.||.+.+|--...
T Consensus 261 ~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~ 306 (1062)
T KOG1912|consen 261 YECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEE 306 (1062)
T ss_pred hhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeecc
Confidence 9999888877777777788888776 8999999999999986553
No 304
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=6.8e-09 Score=84.75 Aligned_cols=264 Identities=16% Similarity=0.077 Sum_probs=167.8
Q ss_pred ccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-
Q 015301 84 LRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS- 162 (409)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 162 (409)
|...|+.+.-+ -.+++.+++.||.++.|.-..-.. ..+......|...+.+++.+-++.++.+.+.
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isG------------vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~ 74 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISG------------VEFVKHFRAHLGVILSLAVSYDGWLFRSVEDP 74 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccc------------eeehhhhHHHHHHHHhhhccccceeEeeccCc
Confidence 44456655443 567999999999999997644221 2233333345557888999999999998777
Q ss_pred cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCC--c-EEEE-eeCCCeEEEecccccccCCceeeeeeccccceeEEE
Q 015301 163 DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETG--H-LIFS-GSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 238 (409)
Q Consensus 163 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~-~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (409)
|..++++|+++-..+..++.- .....+.|.-..+ . .+++ .-.+|.+.++|-+ .........-.-|..+|..+.
T Consensus 75 Dhs~KvfDvEn~DminmiKL~-~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~--~d~~q~~~fkklH~sPV~~i~ 151 (558)
T KOG0882|consen 75 DHSVKVFDVENFDMINMIKLV-DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGF--GDFCQDGYFKKLHFSPVKKIR 151 (558)
T ss_pred ccceeEEEeeccchhhhcccc-cCCCceEEecCCCCeeeeEEeecccCCCcEEECCc--CCcCccceecccccCceEEEE
Confidence 999999999877655433321 1112223321222 1 3333 3467899999965 233344555566999999999
Q ss_pred EcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEe
Q 015301 239 SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS 318 (409)
Q Consensus 239 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (409)
+++.+..+++....|.|..|.....-+... ....|.. .....+..+... .....+
T Consensus 152 y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr-----~~l~~~~--------------K~eTdLy~f~K~------Kt~pts 206 (558)
T KOG0882|consen 152 YNQAGDSAVSIDISGMVEYWSAEGPFQFPR-----TNLNFEL--------------KHETDLYGFPKA------KTEPTS 206 (558)
T ss_pred eeccccceeeccccceeEeecCCCcccCcc-----ccccccc--------------cccchhhccccc------ccCccc
Confidence 999999999999999999999874110000 0000000 000001111111 112235
Q ss_pred eeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc--------------------------------CCc-ceeeeEEec
Q 015301 319 PEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF--------------------------------HNA-PVRDCCWHP 365 (409)
Q Consensus 319 ~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--------------------------------~~~-~v~~~~~s~ 365 (409)
..|+|++..+.+-+.|..|++++.++++.++.+.. |.. .-+.+.|..
T Consensus 207 ~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde 286 (558)
T KOG0882|consen 207 FEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE 286 (558)
T ss_pred eEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC
Confidence 57999999999999999999999999876554421 222 335678888
Q ss_pred CcCeEEeecCCCeEEEEecCCCcc
Q 015301 366 IYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 366 ~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
.+++|+-++.=| |++.++.++.-
T Consensus 287 s~~flly~t~~g-ikvin~~tn~v 309 (558)
T KOG0882|consen 287 SGNFLLYGTILG-IKVINLDTNTV 309 (558)
T ss_pred CCCEEEeeccee-EEEEEeecCeE
Confidence 899888887654 78888876543
No 305
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.07 E-value=1.1e-06 Score=76.32 Aligned_cols=264 Identities=9% Similarity=0.049 Sum_probs=151.5
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEE-EEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceee
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITD-TSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHK 130 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~ 130 (409)
+..++.++.+|.+..+|.++++.+.+.... + .+.+ ... .+..++++..++.+..+|..+++............
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~---~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ 193 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA-G---EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSL 193 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCC-C---ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcc
Confidence 456777888999999999998666543221 1 1211 111 24456677888999999999988654433221000
Q ss_pred eeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCC-------CeEEEEEeC-CCCcEEEE
Q 015301 131 GLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS-------DVNTVCFAD-ETGHLIFS 202 (409)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-------~v~~~~~~~-~~~~~l~~ 202 (409)
. . .....++ . .+..++.++.++.+..+|..+++.+........ ....+..+| -.+..++.
T Consensus 194 ~--~----~~~~sP~----v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~ 261 (394)
T PRK11138 194 T--L----RGESAPA----T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYA 261 (394)
T ss_pred c--c----cCCCCCE----E--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEE
Confidence 0 0 0000111 1 123466777889999999999987665431110 000111111 12456777
Q ss_pred eeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccccc
Q 015301 203 GSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRW 282 (409)
Q Consensus 203 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (409)
++.+|.+..+|.. +++...... ......+.. .+..++.++.+|.+..+|..+++..-....
T Consensus 262 ~~~~g~l~ald~~----tG~~~W~~~--~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~----------- 322 (394)
T PRK11138 262 LAYNGNLVALDLR----SGQIVWKRE--YGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSD----------- 322 (394)
T ss_pred EEcCCeEEEEECC----CCCEEEeec--CCCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccc-----------
Confidence 7788999999965 444433221 111112222 356777788899999999877432111000
Q ss_pred ccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceee-e
Q 015301 283 MEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRD-C 361 (409)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~-~ 361 (409)
.. .. ...++.. .+..|+.++.+|.+++.|..+|+.+...+.....+.+ .
T Consensus 323 --------------------~~-~~-------~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P 372 (394)
T PRK11138 323 --------------------LL-HR-------LLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEP 372 (394)
T ss_pred --------------------cC-CC-------cccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCC
Confidence 00 00 0011111 2567888999999999999999998877644333332 2
Q ss_pred EEecCcCeEEeecCCCeEEEEec
Q 015301 362 CWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 362 ~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
.+ .+..|+.++.||.|+.+++
T Consensus 373 ~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 373 VV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EE--ECCEEEEEeCCceEEEEeC
Confidence 22 2346888889999998875
No 306
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.05 E-value=1.4e-07 Score=81.79 Aligned_cols=153 Identities=12% Similarity=0.167 Sum_probs=109.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~ 118 (409)
|...|.--+++..+++++.|+.-|.+++|+-..++...... .+..+.+..+..+++..++|.|+..|.|.++.+....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~--~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKN--EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccc--cCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 44556666677789999999999999999987764433322 2234467777889999999999999999999887743
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC----eeeeEEcCCCCCeEEEEEeC
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN----KCSLRIPAHKSDVNTVCFAD 194 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~v~~~~~~~ 194 (409)
...... +.+....|...|++++|++++..+++|...|.|..-.+.+. -..+.+..-.+.|..+.+.
T Consensus 110 p~~~~~---------~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~- 179 (726)
T KOG3621|consen 110 PRDLDY---------VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL- 179 (726)
T ss_pred CCccee---------eccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-
Confidence 322222 22223346778999999999999999999999999888762 1123333456788888886
Q ss_pred CCCcEEEEee
Q 015301 195 ETGHLIFSGS 204 (409)
Q Consensus 195 ~~~~~l~~~~ 204 (409)
++.+|++..
T Consensus 180 -q~~LLVStl 188 (726)
T KOG3621|consen 180 -QSYLLVSTL 188 (726)
T ss_pred -cceehHhhh
Confidence 444444433
No 307
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.05 E-value=5.7e-07 Score=72.54 Aligned_cols=223 Identities=16% Similarity=0.106 Sum_probs=132.6
Q ss_pred CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCC
Q 015301 60 QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGD 139 (409)
Q Consensus 60 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (409)
.+|+|..||..+++.+............+ +. ..+++..+++++.++.+..||..+++.............
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~-------- 70 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG-------- 70 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS--------
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc--------
Confidence 36889999998887776653322122222 11 223566777788999999999999886544443221111
Q ss_pred CcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE-cCCCC---CeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 140 EDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI-PAHKS---DVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 140 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
. . ...+..+++++.++.+..+|..+|+.+... ..... ........ ..++.++++..++.|..+|++
T Consensus 71 -----~--~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~~~d~~ 140 (238)
T PF13360_consen 71 -----A--P--VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPA-VDGDRLYVGTSSGKLVALDPK 140 (238)
T ss_dssp -----G--E--EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEE-EETTEEEEEETCSEEEEEETT
T ss_pred -----e--e--eecccccccccceeeeEecccCCcceeeeeccccccccccccccCce-EecCEEEEEeccCcEEEEecC
Confidence 1 1 124455677778889999999999998874 32211 11222222 237778888889999999965
Q ss_pred ccccCCceeeeeeccccc----------eeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccc
Q 015301 216 CFISKGRANGVLMGHLEG----------ITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEY 285 (409)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (409)
+++.+......... +..-....++ .++.+..++.+..+|+.+.+.
T Consensus 141 ----tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~-------------------- 195 (238)
T PF13360_consen 141 ----TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEK-------------------- 195 (238)
T ss_dssp ----TTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEE--------------------
T ss_pred ----CCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCE--------------------
Confidence 66665555443211 1122222234 667777777544448887321
Q ss_pred cccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEE
Q 015301 286 PSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK 350 (409)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 350 (409)
+ +.... .. . ......++..|++++.++.|..||+++++.+.+
T Consensus 196 --------------~--w~~~~--~~----~-~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 196 --------------L--WSKPI--SG----I-YSLPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp --------------E--EEECS--S-----E-CECEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred --------------E--EEecC--CC----c-cCCceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 1 11110 00 0 011334678888888999999999999987643
No 308
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.03 E-value=1.8e-06 Score=69.20 Aligned_cols=235 Identities=16% Similarity=0.111 Sum_probs=145.2
Q ss_pred eEEEEEeCC-CCcEEEEEecCC-EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--
Q 015301 87 TITDTSLSP-DQRFLVYASICA-IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-- 162 (409)
Q Consensus 87 ~v~~~~~s~-~~~~l~~~~~dg-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-- 162 (409)
....++.+| +...++.+-.-| ...+||..+++......... +-.| .-...|++||++|++.-.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~---gRHF----------yGHg~fs~dG~~LytTEnd~ 72 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPP---GRHF----------YGHGVFSPDGRLLYTTENDY 72 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC---CCEE----------ecCEEEcCCCCEEEEecccc
Confidence 345678889 566777777766 47789998887654332221 1111 223679999999998744
Q ss_pred ---cCeEEEEECC-CCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeC-------CC-----------eEEEecccccccC
Q 015301 163 ---DNFIYVYDLQ-ANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD-------DS-----------LCKVWDRRCFISK 220 (409)
Q Consensus 163 ---d~~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------dg-----------~i~iwd~~~~~~~ 220 (409)
.|.|-|||.. +-+.+.++..|.-....+.+. +++..|+++.. .| ++...|. .+
T Consensus 73 ~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~-pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~----~s 147 (305)
T PF07433_consen 73 ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLM-PDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA----RS 147 (305)
T ss_pred CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEc-CCCCEEEEEcCCCccCcccCceecChhhcCCceEEEec----CC
Confidence 5899999998 667778888888788889999 78877776531 12 2333332 24
Q ss_pred Cceeee--e--eccccceeEEEEcCCCCeEEEEeCCCc-------EEEeeCCCCcccccccccccccccccccccccccc
Q 015301 221 GRANGV--L--MGHLEGITFIDSRRDGRYFISNGKDQT-------TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYA 289 (409)
Q Consensus 221 ~~~~~~--~--~~~~~~v~~~~~~~~~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (409)
+..+.. + ..|...|..+++.++|..++..-..|. |.+++-
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~----------------------------- 198 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR----------------------------- 198 (305)
T ss_pred CceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC-----------------------------
Confidence 554444 3 236678889999988876554433331 111111
Q ss_pred eeccccCccceeeeecccc-eeeeeEEEEeeeecCCCCEEEEEeC-CCeEEEEEccCCceEEEeccCCcceeeeEEecCc
Q 015301 290 RRLKHPHDQSLATYKGHSV-LRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIY 367 (409)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 367 (409)
+..+..+..... .......+-++++++++.++++.+- .+.+.+||..+++.+....-. .+..++-.+++
T Consensus 199 -------g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~ 269 (305)
T PF07433_consen 199 -------GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG 269 (305)
T ss_pred -------CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc
Confidence 111111111110 1112233456688889988876664 678999999999998776533 35566666655
Q ss_pred CeEEeecCCCeE
Q 015301 368 PMLISSSWDCNI 379 (409)
Q Consensus 368 ~~l~s~~~dg~i 379 (409)
+++|.+. |.+
T Consensus 270 -f~~ssG~-G~~ 279 (305)
T PF07433_consen 270 -FLVSSGQ-GQL 279 (305)
T ss_pred -eEEeCCC-ccE
Confidence 6666654 543
No 309
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.02 E-value=3.4e-07 Score=73.81 Aligned_cols=225 Identities=14% Similarity=0.080 Sum_probs=131.2
Q ss_pred CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCC
Q 015301 106 CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS 185 (409)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 185 (409)
+|.|..||..+++........... . ...+. ..+++..+++++.++.|..||..+|+.+..... ..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~------------~-~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~ 66 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGI------------G-GPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PG 66 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSC------------S-SEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SS
T ss_pred CCEEEEEECCCCCEEEEEECCCCC------------C-Cccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cc
Confidence 678888888887765444331100 0 11111 223556677778899999999999999887764 23
Q ss_pred CeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeee-eccc---cceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 186 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-MGHL---EGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 186 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
.+..... ..+..+++++.++.+..+|.+ +++..... .... ..........++..++.+..++.|..+|.+
T Consensus 67 ~~~~~~~--~~~~~v~v~~~~~~l~~~d~~----tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 140 (238)
T PF13360_consen 67 PISGAPV--VDGGRVYVGTSDGSLYALDAK----TGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPK 140 (238)
T ss_dssp CGGSGEE--EETTEEEEEETTSEEEEEETT----TSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETT
T ss_pred cccceee--ecccccccccceeeeEecccC----CcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecC
Confidence 2222112 235566777788899999954 66666653 2221 111222222337788888889999999998
Q ss_pred CCcccccccccccccccccccccccccceeccccCccceeeeeccccee-----eeeEEEEeeeecCCCCEEEEEeCCCe
Q 015301 262 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR-----TLIRCYFSPEYSTAQKYIYTGSSDNS 336 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~l~~~~~dg~ 336 (409)
++.... .+....... ........+.+. ++ .++.++.++.
T Consensus 141 tG~~~w----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~ 184 (238)
T PF13360_consen 141 TGKLLW----------------------------------KYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGR 184 (238)
T ss_dssp TTEEEE----------------------------------EEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSS
T ss_pred CCcEEE----------------------------------EeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCe
Confidence 854322 221111000 000001111222 34 6777777775
Q ss_pred EEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 337 VYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 337 v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
+.-+|+.+++.+.... ...+..+ ...++..|+.++.++.|..||+.+++..
T Consensus 185 ~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 185 VVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp EEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred EEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 4444999998765333 2223332 3466777887778999999999987653
No 310
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=99.00 E-value=1.7e-06 Score=70.20 Aligned_cols=280 Identities=15% Similarity=0.087 Sum_probs=158.2
Q ss_pred CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe----------cCCEEEEEEcCCCccccccceeceeee
Q 015301 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS----------ICAIVNIVDVGSSARESLANVTEIHKG 131 (409)
Q Consensus 62 ~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (409)
+.+.|+|.++++.+-...... .-.+..+|+++.+.+++ ..-.|.+||..+-.......++..+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~-----~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF-----LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES-----SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeeccc-----CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 479999998885444332222 22366899999988764 234699999998765544443322111
Q ss_pred eeeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeE
Q 015301 132 LDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLC 209 (409)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 209 (409)
.. ......++++.+++++++... ..+|.|.|++.++.+.++.... |.-..|..+.-+.+-+.||.+
T Consensus 92 ~~--------~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl 159 (342)
T PF06433_consen 92 QV--------VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDGSL 159 (342)
T ss_dssp -B--------S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEETTSCE
T ss_pred ee--------cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCCCceEEEecCCce
Confidence 00 002344688999999888755 5689999999999988876322 222223344567888899999
Q ss_pred EEecccccccCCceeeee----eccccce-eEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccccccc
Q 015301 210 KVWDRRCFISKGRANGVL----MGHLEGI-TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME 284 (409)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~----~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (409)
....+. ..++..... ....+++ ..-.+...+..++..+.+|.|+--|+.......... |.. .
T Consensus 160 ~~v~Ld---~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~-------~~~---~ 226 (342)
T PF06433_consen 160 LTVTLD---ADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKP-------WSL---L 226 (342)
T ss_dssp EEEEET---STSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEE-------EES---S
T ss_pred EEEEEC---CCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCc-------ccc---c
Confidence 888875 233332211 1111222 233344455556667888988888887633111100 000 0
Q ss_pred ccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC--------C--CeEEEEEccCCceEEEeccC
Q 015301 285 YPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS--------D--NSVYIYDLVSGAQVAKLDFH 354 (409)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--------d--g~v~i~d~~~~~~~~~~~~~ 354 (409)
.......-+.+.+.. -.++++..+.|++--. | ..|.++|+.+++.+.++..
T Consensus 227 t~~e~~~~WrPGG~Q------------------~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l- 287 (342)
T PF06433_consen 227 TDAEKADGWRPGGWQ------------------LIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL- 287 (342)
T ss_dssp -HHHHHTTEEE-SSS-------------------EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-
T ss_pred CccccccCcCCccee------------------eeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-
Confidence 000000000000111 1133333333333211 1 2488999999999999874
Q ss_pred CcceeeeEEecCcC-eEEee-cCCCeEEEEecCCCccc
Q 015301 355 NAPVRDCCWHPIYP-MLISS-SWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 355 ~~~v~~~~~s~~~~-~l~s~-~~dg~i~iw~~~~~~~~ 390 (409)
..++.+|+.+.+.+ +|++. ..++.|.+||..+++..
T Consensus 288 ~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 288 EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 45788999998877 66654 46899999999987543
No 311
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.00 E-value=1.2e-06 Score=76.23 Aligned_cols=266 Identities=10% Similarity=-0.051 Sum_probs=153.1
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEE-----EEEeCC--CCcEEEEEecCCEEEEEEcCCCccccccc
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTIT-----DTSLSP--DQRFLVYASICAIVNIVDVGSSARESLAN 124 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~-----~~~~s~--~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 124 (409)
+..+++++.+|.+.-+|.++++.+.+...... ..... .+.-.| ++..+++++.+|.+..+|.++++......
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEK-DGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCc-ccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 55777788889999999998866654322210 00000 000111 35567778889999999999988755444
Q ss_pred eeceeeeeeeecCCCCcceeeEE-EEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCe-----EEEEEeCCCCc
Q 015301 125 VTEIHKGLDFSADGDEDEFGIFS-VKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV-----NTVCFADETGH 198 (409)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~ 198 (409)
.... +.+ ... .+..+++++.++.+..+|.++|+.+.......... ...... +.
T Consensus 148 ~~~~----------------~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~---~~ 206 (394)
T PRK11138 148 VAGE----------------ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA---FG 206 (394)
T ss_pred CCCc----------------eecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE---CC
Confidence 3211 111 111 23456777788999999999999887775321111 111111 23
Q ss_pred EEEEeeCCCeEEEecccccccCCceeeeeeccc----c---ceeEEEEcC--CCCeEEEEeCCCcEEEeeCCCCcccccc
Q 015301 199 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL----E---GITFIDSRR--DGRYFISNGKDQTTKLWDIRKMSSNTTD 269 (409)
Q Consensus 199 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~---~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 269 (409)
.++.++.+|.+..+|.. +++......... . ....+..+| .+..++.++.+|.+..+|..+++..-.
T Consensus 207 ~v~~~~~~g~v~a~d~~----~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~- 281 (394)
T PRK11138 207 GAIVGGDNGRVSAVLME----QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWK- 281 (394)
T ss_pred EEEEEcCCCEEEEEEcc----CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEe-
Confidence 56667788888888854 443332221100 0 011111122 245677777889999999887432111
Q ss_pred cccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEE
Q 015301 270 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA 349 (409)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~ 349 (409)
..... . ..+.. .+..|+.++.+|.++.+|..+++.+.
T Consensus 282 ---------------------------------~~~~~----~----~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W 318 (394)
T PRK11138 282 ---------------------------------REYGS----V----NDFAV--DGGRIYLVDQNDRVYALDTRGGVELW 318 (394)
T ss_pred ---------------------------------ecCCC----c----cCcEE--ECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 00000 0 00111 35677888899999999999998765
Q ss_pred EeccCC-cceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 350 KLDFHN-APVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 350 ~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
....-. ....+... .+.+|+.++.||.|++.|..+++.
T Consensus 319 ~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 319 SQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRF 357 (394)
T ss_pred cccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 543211 11222222 245677888999999999887654
No 312
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.99 E-value=1.6e-09 Score=59.10 Aligned_cols=36 Identities=25% Similarity=0.520 Sum_probs=34.1
Q ss_pred CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYN 68 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~ 68 (409)
..++.+|.+.|++++|+|++.+|++++.|++|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357899999999999999999999999999999997
No 313
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.98 E-value=3.1e-06 Score=67.85 Aligned_cols=200 Identities=16% Similarity=0.191 Sum_probs=128.9
Q ss_pred CeEEEEECC-CCCEEEEEeCCCc-EEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe-----cCCEEEEEEc
Q 015301 42 RVYTSQFSN-DGSFFVAASQESN-IKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-----ICAIVNIVDV 114 (409)
Q Consensus 42 ~v~~~~~s~-~~~~l~t~~~d~~-i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~~w~~ 114 (409)
.-..++.+| ++..++.+-.-|+ ..+||..++..........+. .---.-.||+||++|++.- ..|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR-HFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR-HFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC-EEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 345678888 4556666766554 678999988666544332221 1223357999999999873 4578999999
Q ss_pred CCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe------------------cCeEEEEECCCCee
Q 015301 115 GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS------------------DNFIYVYDLQANKC 176 (409)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------d~~i~v~d~~~~~~ 176 (409)
... ........ .+.-....+.+.|||+.|+++.. +.++...|..+|+.
T Consensus 85 ~~~-~~ri~E~~-------------s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l 150 (305)
T PF07433_consen 85 ARG-YRRIGEFP-------------SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL 150 (305)
T ss_pred cCC-cEEEeEec-------------CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce
Confidence 832 21111111 11224677889999988887632 33566777888887
Q ss_pred eeE--E--cCCCCCeEEEEEeCCCCcEEEEeeCCCe-------EEEecccccccCCceeeee-------eccccceeEEE
Q 015301 177 SLR--I--PAHKSDVNTVCFADETGHLIFSGSDDSL-------CKVWDRRCFISKGRANGVL-------MGHLEGITFID 238 (409)
Q Consensus 177 ~~~--~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~~~~-------~~~~~~v~~~~ 238 (409)
+.. + ..|...|..+++. .++..++..-..|. +-+++. +..+..+ ..-.+.+-+|+
T Consensus 151 l~q~~Lp~~~~~lSiRHLa~~-~~G~V~~a~Q~qg~~~~~~PLva~~~~------g~~~~~~~~p~~~~~~l~~Y~gSIa 223 (305)
T PF07433_consen 151 LEQVELPPDLHQLSIRHLAVD-GDGTVAFAMQYQGDPGDAPPLVALHRR------GGALRLLPAPEEQWRRLNGYIGSIA 223 (305)
T ss_pred eeeeecCccccccceeeEEec-CCCcEEEEEecCCCCCccCCeEEEEcC------CCcceeccCChHHHHhhCCceEEEE
Confidence 766 4 3377889999998 77776665544432 444442 2212111 23346788999
Q ss_pred EcCCCCeEEEEe-CCCcEEEeeCCCC
Q 015301 239 SRRDGRYFISNG-KDQTTKLWDIRKM 263 (409)
Q Consensus 239 ~~~~~~~l~~~~-~dg~i~iwd~~~~ 263 (409)
+++++..+++.+ ..+.+.+||..+.
T Consensus 224 ~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 224 ADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred EeCCCCEEEEECCCCCEEEEEECCCC
Confidence 999998775554 5779999998873
No 314
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.96 E-value=6.4e-06 Score=63.08 Aligned_cols=139 Identities=14% Similarity=0.135 Sum_probs=90.3
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeee
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKG 131 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (409)
..+++.|+..+.+.--|..++....+.. ... +|.+-+.- -|++++.|...|.+++.++.++.........+...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~---RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk- 96 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGV---RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK- 96 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCc---eeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhc-
Confidence 3566778888888888888875544322 111 33332222 46789999999999999999996544443332211
Q ss_pred eeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEE
Q 015301 132 LDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKV 211 (409)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 211 (409)
+ .....+++..+..|+.|+..+..|..+...+.+.+...+.-.+-+..|.++.+. .+...|.+.-
T Consensus 97 -------------~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly-~a~t~G~vla 161 (354)
T KOG4649|consen 97 -------------V-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLY-AAITAGAVLA 161 (354)
T ss_pred -------------c-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEE-EEeccceEEE
Confidence 1 233456889999999999999999999999888775554445556663344444 4444454443
No 315
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.95 E-value=9.7e-10 Score=97.22 Aligned_cols=194 Identities=19% Similarity=0.169 Sum_probs=137.4
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCC--EEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA--IVNI 111 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~~ 111 (409)
..+..|+..-+|++|+-+.+.|+.|+..|.|+++++.+|.... ...+|..+|+-+.-+.||..+++.+.-. ...+
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcceeeeeccccCchHHH
Confidence 4677899999999999999999999999999999999984443 3567888999999999998877665433 4678
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc----CCCCCe
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP----AHKSDV 187 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~~v 187 (409)
|+..+- ........ .-.++.|+.....-+.|+......+||++++.++.++- +....-
T Consensus 1172 W~~~s~-~~~~Hsf~-----------------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~ 1233 (1516)
T KOG1832|consen 1172 WDASST-GGPRHSFD-----------------EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSN 1233 (1516)
T ss_pred hccccc-cCcccccc-----------------ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhc
Confidence 988652 11111111 35678888765555666666778999999998877642 122233
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCc
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS 264 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 264 (409)
++..|+ |...+++ +|| .+||+| ....++.+......+ .-.|+|.|..++..+ .|||+++..
T Consensus 1234 n~a~Fs-P~D~LIl---ndG--vLWDvR----~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1234 NLAHFS-PCDTLIL---NDG--VLWDVR----IPEAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred cccccC-CCcceEe---eCc--eeeeec----cHHHHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHH
Confidence 678888 6666665 455 579987 345555554443222 235899999888754 589999843
No 316
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.93 E-value=9.1e-06 Score=67.33 Aligned_cols=277 Identities=17% Similarity=0.153 Sum_probs=130.2
Q ss_pred EEEECCCCCEEEEEeC-C--CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccc
Q 015301 45 TSQFSNDGSFFVAASQ-E--SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARES 121 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~~-d--~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~ 121 (409)
.=+|.+||+.|+.++. | ..+.+.|+++++. .++....+. ......++|+++.++.......|+-.|+.+.+...
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i-~QLTdg~g~--~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~ 116 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEI-TQLTDGPGD--NTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV 116 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EE-EE---SS-B---TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCEE-EECccCCCC--CccceEEecCCCeEEEEECCCeEEEEECCcCcEEE
Confidence 3467889987766554 4 4577777887733 333332221 12235677888888776666788999999987655
Q ss_pred ccceeceeeeeeeecCCCCcceeeEEEEE--cCCCCeEEEEE----------------------ecCeEEEEECCCCeee
Q 015301 122 LANVTEIHKGLDFSADGDEDEFGIFSVKF--STDGQELVAAG----------------------SDNFIYVYDLQANKCS 177 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~----------------------~d~~i~v~d~~~~~~~ 177 (409)
+........ -...| +.++..++-.- ....|.-.|+.+|+..
T Consensus 117 vy~~p~~~~---------------g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~ 181 (386)
T PF14583_consen 117 VYEVPDDWK---------------GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK 181 (386)
T ss_dssp EEE--TTEE---------------EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE
T ss_pred EEECCcccc---------------cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee
Confidence 555443322 12233 23444433221 1235667788888765
Q ss_pred eEEcCCCCCeEEEEEeCCCCcEEEEeeC---CC-eEEEecccccccCCceeeeeeccc--cceeEEEEcCCCCeEEEEeC
Q 015301 178 LRIPAHKSDVNTVCFADETGHLIFSGSD---DS-LCKVWDRRCFISKGRANGVLMGHL--EGITFIDSRRDGRYFISNGK 251 (409)
Q Consensus 178 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg-~i~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~ 251 (409)
..+. -...+..+.|+|.++.+|+-|-+ +. .-+||-++. .+.....+..+. ..+..=-|.|||..|.--+.
T Consensus 182 ~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~---dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~ 257 (386)
T PF14583_consen 182 VVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT---DGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSY 257 (386)
T ss_dssp EEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET---TS---EESS---TTEEEEEEEE-TTSS-EEEEEE
T ss_pred EEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc---CCCcceeeecCCCCcccccccccCCCCEEEEEee
Confidence 5554 46678899999888888877643 33 247777653 233333333332 23333458899987654322
Q ss_pred -----CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCC
Q 015301 252 -----DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK 326 (409)
Q Consensus 252 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 326 (409)
+..|.-+|+.+.... .+.... .......++||+
T Consensus 258 ~~~~~~~~i~~~d~~t~~~~--------------------------------~~~~~p----------~~~H~~ss~Dg~ 295 (386)
T PF14583_consen 258 TPGGQDFWIAGYDPDTGERR--------------------------------RLMEMP----------WCSHFMSSPDGK 295 (386)
T ss_dssp ETTT--EEEEEE-TTT--EE--------------------------------EEEEE-----------SEEEEEE-TTSS
T ss_pred cCCCCceEEEeeCCCCCCce--------------------------------EEEeCC----------ceeeeEEcCCCC
Confidence 334555555542110 000000 111223456777
Q ss_pred EEEEEeCC----------------CeEEEEEccCCceEEEe---------ccCCc-ceeeeEEecCcC-eEEeecCCCeE
Q 015301 327 YIYTGSSD----------------NSVYIYDLVSGAQVAKL---------DFHNA-PVRDCCWHPIYP-MLISSSWDCNI 379 (409)
Q Consensus 327 ~l~~~~~d----------------g~v~i~d~~~~~~~~~~---------~~~~~-~v~~~~~s~~~~-~l~s~~~dg~i 379 (409)
+++-=+.| --|+++++..++..... .++.. .=....|+||++ .|+++...|..
T Consensus 296 L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~ 375 (386)
T PF14583_consen 296 LFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPP 375 (386)
T ss_dssp EEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-
T ss_pred EEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCc
Confidence 76543333 25677888766543211 11111 124579999999 55667778877
Q ss_pred EEEecC
Q 015301 380 VRWEIP 385 (409)
Q Consensus 380 ~iw~~~ 385 (409)
.||-++
T Consensus 376 ~vY~v~ 381 (386)
T PF14583_consen 376 AVYLVE 381 (386)
T ss_dssp EEEEEE
T ss_pred cEEEEe
Confidence 776543
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.90 E-value=1.1e-05 Score=75.03 Aligned_cols=217 Identities=15% Similarity=0.140 Sum_probs=135.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcC----
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVG---- 115 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~---- 115 (409)
.+.|.++.|-.++.-++.+..+|.|.+-|.++..... .......|.+++|+||+..++..+..+++.+-+-.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei----vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI----VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee----eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccch
Confidence 3689999999999999999999999999877652221 22234479999999999999999988887664331
Q ss_pred CCccc--------cccceeceeeeeeeecCCC-----------------CcceeeEEEEEcCCCCeEEEEEe----c-Ce
Q 015301 116 SSARE--------SLANVTEIHKGLDFSADGD-----------------EDEFGIFSVKFSTDGQELVAAGS----D-NF 165 (409)
Q Consensus 116 ~~~~~--------~~~~~~~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~l~~~~~----d-~~ 165 (409)
..+.. ......-.....+|..... .....=+.+.|--||+++++... + ..
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 11110 0000000001111221100 01112345899999999988432 3 78
Q ss_pred EEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee---CCCeEEEecccccccCCceeeeeeccccceeEEEEcCC
Q 015301 166 IYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS---DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD 242 (409)
Q Consensus 166 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 242 (409)
|++||-+ |..-..-....+--.+++|- |.|.++++-. .|+.|.+|.... ...+............+..++|+.+
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWk-Psgs~iA~iq~~~sd~~IvffErNG-L~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWK-PSGSLIAAIQCKTSDSDIVFFERNG-LRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeec-CCCCeEeeeeecCCCCcEEEEecCC-ccccccccCCcccccchheeeecCC
Confidence 9999976 54433333334445689998 6888888753 456788887421 1122222223333344899999999
Q ss_pred CCeEEE---EeCCCcEEEeeCCCC
Q 015301 243 GRYFIS---NGKDQTTKLWDIRKM 263 (409)
Q Consensus 243 ~~~l~~---~~~dg~i~iwd~~~~ 263 (409)
+..|++ ......|++|-+.+.
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCceeeeecccccceEEEEEecCe
Confidence 999887 444555999998773
No 318
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.87 E-value=4.2e-06 Score=77.57 Aligned_cols=155 Identities=14% Similarity=0.144 Sum_probs=104.5
Q ss_pred ceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCe
Q 015301 86 WTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF 165 (409)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 165 (409)
..|.++.|..+...++.+...|.|.+-|..+.......... .+|.+++|+||++.++..+..++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd----------------~GI~aaswS~Dee~l~liT~~~t 132 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD----------------NGISAASWSPDEELLALITGRQT 132 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc----------------CceEEEeecCCCcEEEEEeCCcE
Confidence 47999999999999999999999999988776654433332 26999999999999999888777
Q ss_pred EEEEECC----CCeee-------------------eEEcCC---------------------CCCeEEEEEeCCCCcEEE
Q 015301 166 IYVYDLQ----ANKCS-------------------LRIPAH---------------------KSDVNTVCFADETGHLIF 201 (409)
Q Consensus 166 i~v~d~~----~~~~~-------------------~~~~~~---------------------~~~v~~~~~~~~~~~~l~ 201 (409)
+.+.+-. ..+++ ..+.+. .+.=+.+.|- .+|.+++
T Consensus 133 ll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR-gDg~~fA 211 (1265)
T KOG1920|consen 133 LLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR-GDGEYFA 211 (1265)
T ss_pred EEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc-cCCcEEE
Confidence 7765421 00100 011110 1112458898 8898988
Q ss_pred Ee-----eCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEe---CCCcEEEeeCCC
Q 015301 202 SG-----SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG---KDQTTKLWDIRK 262 (409)
Q Consensus 202 ~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~ 262 (409)
+. .....|++||.. +.....-....+.-.+++|-|.|..+++-. .|+.|.+|.-+.
T Consensus 212 Vs~~~~~~~~RkirV~drE-----g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG 275 (1265)
T KOG1920|consen 212 VSFVESETGTRKIRVYDRE-----GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG 275 (1265)
T ss_pred EEEEeccCCceeEEEeccc-----chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCC
Confidence 83 233789999942 333222223334456799999999888764 355788887554
No 319
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.82 E-value=1.3e-05 Score=68.48 Aligned_cols=205 Identities=12% Similarity=0.150 Sum_probs=106.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccc--------------cceEEEEEeCCCCcEEEEEec
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKAL--------------RWTITDTSLSPDQRFLVYASI 105 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~--------------~~~v~~~~~s~~~~~l~~~~~ 105 (409)
...+....|||+|+.+|... ++.|.+++..++...+........ -+.-..+.||||+++||....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 57799999999999999886 578999998877333222111000 012356889999999998753
Q ss_pred C-CEEEEE---EcCCCcc--ccccceec-----e--eeee-----------eeecC--CCCcceeeEEEEEcCCCCeEEE
Q 015301 106 C-AIVNIV---DVGSSAR--ESLANVTE-----I--HKGL-----------DFSAD--GDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 106 d-g~i~~w---~~~~~~~--~~~~~~~~-----~--~~~~-----------~~~~~--~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
| ..|..+ +...... .......- . ...+ .+... ......-+..+.|.++++.|+.
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 3 222222 2222110 00000000 0 0000 00000 0122345889999999985554
Q ss_pred EEec-----CeEEEEECCCCeeeeEEcC-CCC---CeEEEEEe-CCCCcEEEEeeCCCeEEEecccccccCCceeeeeec
Q 015301 160 AGSD-----NFIYVYDLQANKCSLRIPA-HKS---DVNTVCFA-DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG 229 (409)
Q Consensus 160 ~~~d-----~~i~v~d~~~~~~~~~~~~-~~~---~v~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 229 (409)
.-.+ ..+.++|..+++....... ... .-....+. +.+..++.....+|.-+||-+. ..+.....+..
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~---~~~~~~~~lT~ 277 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYD---LDGGKPRQLTS 277 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEE---TTSSEEEESS-
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEc---ccccceecccc
Confidence 4332 3577778877655433321 122 22345554 5666777777788876666553 23333444544
Q ss_pred cccceeE-EEEcCCCCeEEE
Q 015301 230 HLEGITF-IDSRRDGRYFIS 248 (409)
Q Consensus 230 ~~~~v~~-~~~~~~~~~l~~ 248 (409)
..-.|.. +.++++++.+..
T Consensus 278 G~~~V~~i~~~d~~~~~iyf 297 (353)
T PF00930_consen 278 GDWEVTSILGWDEDNNRIYF 297 (353)
T ss_dssp SSS-EEEEEEEECTSSEEEE
T ss_pred CceeecccceEcCCCCEEEE
Confidence 4555644 667887775543
No 320
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3.3e-07 Score=74.16 Aligned_cols=239 Identities=17% Similarity=0.163 Sum_probs=132.0
Q ss_pred CcceeeEEEEEcCCCC-eEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccc
Q 015301 140 EDEFGIFSVKFSTDGQ-ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 218 (409)
Q Consensus 140 ~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 218 (409)
.+...|..++|+|..+ ++..++.+..|.|.|+++...+..+..+ ..+.+++|.-.+.++|++|...|.|.+||+|..
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~- 268 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP- 268 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC-
Confidence 3445699999999766 7888899999999999999988888877 789999998677889999999999999999832
Q ss_pred cCCceeeeeec--cccceeEEEE------cCCCCeEEEEeCCCcEEEeeCCCCccccccccccc----cccccccc----
Q 015301 219 SKGRANGVLMG--HLEGITFIDS------RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLR----DYDWDYRW---- 282 (409)
Q Consensus 219 ~~~~~~~~~~~--~~~~v~~~~~------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~---- 282 (409)
...+..+.+ ...+|..++. .+.+.+++....+ +..|++...........+.. -.++.+..
T Consensus 269 --~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh 344 (463)
T KOG1645|consen 269 --EGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNH 344 (463)
T ss_pred --CchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccce
Confidence 222222222 2234444432 2234444444333 56666543221111100000 00000000
Q ss_pred --cccc-----ccce----eccccCccceeeeecccceeeeeEEEEeee--ecCCCCEEE-EEeCCCeEEEEEccCCceE
Q 015301 283 --MEYP-----SYAR----RLKHPHDQSLATYKGHSVLRTLIRCYFSPE--YSTAQKYIY-TGSSDNSVYIYDLVSGAQV 348 (409)
Q Consensus 283 --~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~l~-~~~~dg~v~i~d~~~~~~~ 348 (409)
+.+. +..+ ......+..+..-+...............+ -.++.++++ +|...+.+.+||..+++.+
T Consensus 345 ~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evv 424 (463)
T KOG1645|consen 345 LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVV 424 (463)
T ss_pred EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhee
Confidence 0000 0000 000011111111000000000000000001 123344444 4555688999999999999
Q ss_pred EEeccCCcceeeeEEecC-cC-eEEeecCCCeEEEEecCC
Q 015301 349 AKLDFHNAPVRDCCWHPI-YP-MLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 349 ~~~~~~~~~v~~~~~s~~-~~-~l~s~~~dg~i~iw~~~~ 386 (409)
+++. -+.+|.+++.... +. +|++-. |..++|+..+.
T Consensus 425 Q~l~-~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 425 QTLA-LSEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred eecc-cCcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 9997 4588988876543 33 676664 56888887543
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=4.2e-06 Score=74.66 Aligned_cols=208 Identities=12% Similarity=0.106 Sum_probs=128.1
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccce-EEEEEeCCCCcEEEEEecCC-----EEEEEEcC
Q 015301 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWT-ITDTSLSPDQRFLVYASICA-----IVNIVDVG 115 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg-----~i~~w~~~ 115 (409)
.|+| |++.+..++.|+.+|.|.+.+-.- .. ......+... |..+....+..+|++.+.|+ .+++|+++
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s~--~~--~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSSF--QL--IRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecccc--ee--eehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 5555 578889999999999888876432 22 1223333334 44444444446777776554 59999997
Q ss_pred CCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECC----CCeeeeEEcCCCCCeEEEE
Q 015301 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ----ANKCSLRIPAHKSDVNTVC 191 (409)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~----~~~~~~~~~~~~~~v~~~~ 191 (409)
.-+..........+.- +.........++.+++.+.+-+.+|+|-.+|.|..+.-. .+....-......+|+.++
T Consensus 101 k~~~n~sP~c~~~~ri--~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~ 178 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRI--FTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA 178 (933)
T ss_pred ccCCCCCcceeeeeee--eccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeE
Confidence 6542221111111111 111112345678999999999999999999999888431 1111111223468999999
Q ss_pred EeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 192 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 192 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
+. .++..++-+.....|.+|.+. ........+..|..+..|..+++....+++++.. .+.+|+...
T Consensus 179 ~~-~d~~s~lFv~Tt~~V~~y~l~---gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~ 244 (933)
T KOG2114|consen 179 LR-SDGKSVLFVATTEQVMLYSLS---GRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDG 244 (933)
T ss_pred Ee-cCCceeEEEEecceeEEEEec---CCCcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCC
Confidence 98 566552233334678999974 1222345577788889999998765556666655 599999765
No 322
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.78 E-value=1.9e-05 Score=62.46 Aligned_cols=211 Identities=13% Similarity=0.157 Sum_probs=115.3
Q ss_pred ceeecCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w 112 (409)
+.+.+-...+..++|.|+.+ ++++....+.|..++.+ +..+ ......+. +..-.|++..++.++++.-.++.+.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vl-r~i~l~g~-~D~EgI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVL-RRIPLDGF-GDYEGITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EE-EEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEE-EEEeCCCC-CCceeEEEECCCEEEEEEcCCCcEEEE
Confidence 34556667799999999865 55566667778777764 4333 33444442 358889998888777776678999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCC---CeeeeE--------Ec
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA---NKCSLR--------IP 181 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~---~~~~~~--------~~ 181 (409)
++........... ...+.+... ..+...+-.++|.+.++.|+++-...-..++.+.. ...+.. ..
T Consensus 92 ~~~~~~~~~~~~~---~~~~~l~~~-~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~ 167 (248)
T PF06977_consen 92 TIDDDTTSLDRAD---VQKISLGFP-NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDK 167 (248)
T ss_dssp EE----TT--EEE---EEEEE---S----SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT
T ss_pred EEeccccccchhh---ceEEecccc-cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccc
Confidence 9854332111110 001111111 12344689999999888888887766666666543 111111 11
Q ss_pred CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccc---------cceeEEEEcCCCCeEEEEeCC
Q 015301 182 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL---------EGITFIDSRRDGRYFISNGKD 252 (409)
Q Consensus 182 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d 252 (409)
.....+.+++++|..+++++.......|..+|. .++.+..+.-.. .+...|+|.++|++.++ ++.
T Consensus 168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-----~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEp 241 (248)
T PF06977_consen 168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-----QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEP 241 (248)
T ss_dssp --SS---EEEEETTTTEEEEEETTTTEEEEE-T-----T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETT
T ss_pred ceeccccceEEcCCCCeEEEEECCCCeEEEECC-----CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCC
Confidence 244568999999888899999999999999994 444443332211 35678999999975554 455
Q ss_pred CcEEE
Q 015301 253 QTTKL 257 (409)
Q Consensus 253 g~i~i 257 (409)
+..++
T Consensus 242 Nlfy~ 246 (248)
T PF06977_consen 242 NLFYR 246 (248)
T ss_dssp TEEEE
T ss_pred ceEEE
Confidence 54443
No 323
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.78 E-value=3.1e-07 Score=82.06 Aligned_cols=186 Identities=15% Similarity=0.155 Sum_probs=131.9
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeee
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKG 131 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (409)
+..++-|+-...+..+|+.+...... ..... +.|.-|+. +++++.+|...|+|.+-|..+.+......
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~-~~v~a--~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~------- 214 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRT-TNVSA--SGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD------- 214 (1118)
T ss_pred Ccceeecchhhheeeeecccceeeee-eeccC--CceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee-------
Confidence 34566666666788888877633332 22221 13555554 57899999999999999998776533222
Q ss_pred eeeecCCCCcceeeEEEEEcCCCCeEEEEEe---------cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEE
Q 015301 132 LDFSADGDEDEFGIFSVKFSTDGQELVAAGS---------DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFS 202 (409)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 202 (409)
.|.+.|.++.. .|+.|++++. |..|+|||++..+.+.-+.-+.++ .-+.|+|.-...+++
T Consensus 215 --------aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V 283 (1118)
T KOG1275|consen 215 --------AHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAV 283 (1118)
T ss_pred --------ccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEE
Confidence 34556766554 7888998875 567899999988877766655554 667888777888999
Q ss_pred eeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeC
Q 015301 203 GSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 260 (409)
Q Consensus 203 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 260 (409)
++..|...+-|.............+......+..++++++++.++.+..+|.|.+|.-
T Consensus 284 ~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 284 TSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred EecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 9999999999943222222333334444556999999999999999999999999983
No 324
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=9.2e-07 Score=78.07 Aligned_cols=141 Identities=17% Similarity=0.242 Sum_probs=96.6
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC-----CcEEEEEecCCEEEEEEcCCCccccccce
Q 015301 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD-----QRFLVYASICAIVNIVDVGSSARESLANV 125 (409)
Q Consensus 51 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 125 (409)
+|.++++|+.||+|.|-.+.+...... ...+. ++.+++++|+ .+.+++|+..| +.++.-.=-......
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~-~df~r---piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-- 154 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQ-YDFKR---PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-- 154 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCcccee-EecCC---cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--
Confidence 599999999999999999888744433 22333 7999999998 57889999888 666532110000000
Q ss_pred eceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCC------CeEEEEEeCCCCcE
Q 015301 126 TEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS------DVNTVCFADETGHL 199 (409)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~ 199 (409)
......++|.++.| .|+++|-++.+| |++||..+++.+..++.... ....+.|. +...
T Consensus 155 -----------~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~--~~~~ 218 (846)
T KOG2066|consen 155 -----------VLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ--DEDR 218 (846)
T ss_pred -----------eeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec--CCCe
Confidence 00122447999999 678899888776 99999999888777643222 23467776 4455
Q ss_pred EEEeeCCCeEEEeccc
Q 015301 200 IFSGSDDSLCKVWDRR 215 (409)
Q Consensus 200 l~~~~~dg~i~iwd~~ 215 (409)
|+.| +..+|+|..++
T Consensus 219 LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 219 LVIG-WGDSVKICSIK 233 (846)
T ss_pred EEEe-cCCeEEEEEEe
Confidence 6665 45578888876
No 325
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.76 E-value=5.9e-07 Score=76.83 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=64.7
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCC
Q 015301 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS 117 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~ 117 (409)
.....|.|++++|+.+.|+.|+.||+|.+||...+..... . ..-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--k---a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--K---AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--e---ecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 5778999999999999999999999999999887633322 1 2236889999999999999999999999999755
Q ss_pred cc
Q 015301 118 AR 119 (409)
Q Consensus 118 ~~ 119 (409)
..
T Consensus 332 pi 333 (545)
T PF11768_consen 332 PI 333 (545)
T ss_pred cc
Confidence 43
No 326
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=1e-06 Score=78.34 Aligned_cols=110 Identities=12% Similarity=0.143 Sum_probs=86.2
Q ss_pred EEEEEeCCCCcEEEEEe----cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec
Q 015301 88 ITDTSLSPDQRFLVYAS----ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD 163 (409)
Q Consensus 88 v~~~~~s~~~~~l~~~~----~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 163 (409)
.+-..|+|...++++++ ..|.|.||- ++++...-... +..+++++|+|..-.|+.|-.-
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~----------------P~hatSLCWHpe~~vLa~gwe~ 80 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY----------------PVHATSLCWHPEEFVLAQGWEM 80 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc----------------ceehhhhccChHHHHHhhcccc
Confidence 34467999999999886 457888874 33332211111 1137789999999889999889
Q ss_pred CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 164 NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 164 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
|.+.+|...+.+.-.....|..+|..+.|+ ++|+.++++..-|.+.+|...
T Consensus 81 g~~~v~~~~~~e~htv~~th~a~i~~l~wS-~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 81 GVSDVQKTNTTETHTVVETHPAPIQGLDWS-HDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ceeEEEecCCceeeeeccCCCCCceeEEec-CCCCeEEEcCCCceeEEEEee
Confidence 999999988777666667899999999999 999999999999999999864
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.76 E-value=1.4e-05 Score=70.42 Aligned_cols=259 Identities=15% Similarity=0.184 Sum_probs=135.7
Q ss_pred EEEEeCCCcEEEEEcCCCeeeeeeeecccc----------cceEE-----------------EEEeC---CCCcEEEEEe
Q 015301 55 FVAASQESNIKVYNVDKNWKIQKDIETKAL----------RWTIT-----------------DTSLS---PDQRFLVYAS 104 (409)
Q Consensus 55 l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~----------~~~v~-----------------~~~~s---~~~~~l~~~~ 104 (409)
+.+|+..|.++|+-+.+...+..+-.+... ...|. .+.+. .||++|+.-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 668888899999998877555443222110 00011 11111 2577887765
Q ss_pred c-CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeE-----EEEEcCCCCeEEEEE-ecCeEEEEECCCCeee
Q 015301 105 I-CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIF-----SVKFSTDGQELVAAG-SDNFIYVYDLQANKCS 177 (409)
Q Consensus 105 ~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~ 177 (409)
. +..|...+++..+......++..............++..|. .+=+.|||+.+...+ ..+.+.+.|.++.+..
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~ 228 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVA 228 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEE
Confidence 3 45566666666555444443332211111111001111222 223455776554332 2567888898887776
Q ss_pred eEEcCCCCCeEEEEEeCCCCcEEEEee----------------------------------------CCCeEEEeccccc
Q 015301 178 LRIPAHKSDVNTVCFADETGHLIFSGS----------------------------------------DDSLCKVWDRRCF 217 (409)
Q Consensus 178 ~~~~~~~~~v~~~~~~~~~~~~l~~~~----------------------------------------~dg~i~iwd~~~~ 217 (409)
..+.... ....++++ +++.++++.+ .++.|.+.|.+..
T Consensus 229 ~qV~Vdg-npd~v~~s-pdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~ 306 (635)
T PRK02888 229 WQVMVDG-NLDNVDTD-YDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKA 306 (635)
T ss_pred EEEEeCC-CcccceEC-CCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCcc
Confidence 6654322 33555666 5666665554 1234556664310
Q ss_pred ccCCceeeeeeccccceeEEEEcCCCCeEEEEeC-CCcEEEeeCCCCcccccccccccccccccccccccccceeccccC
Q 015301 218 ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPH 296 (409)
Q Consensus 218 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (409)
...+..+.....-......+.++|||+++++++. +.++.+.|+.+......... .+.
T Consensus 307 ~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~----------------------~~~ 364 (635)
T PRK02888 307 ANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI----------------------KPR 364 (635)
T ss_pred ccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC----------------------Ccc
Confidence 0001122222223445678999999998877665 88999999988442111100 000
Q ss_pred ccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccC
Q 015301 297 DQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS 344 (409)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~ 344 (409)
...+...+-. ......+|+++|+...+-..|..|..||+.+
T Consensus 365 ~~vvaevevG-------lGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 365 DAVVAEPELG-------LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ceEEEeeccC-------CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 0001111100 0011336888898888888899999999876
No 328
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.73 E-value=1.9e-05 Score=67.53 Aligned_cols=106 Identities=18% Similarity=0.233 Sum_probs=61.1
Q ss_pred CCCCCEEEEEe---------CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcc
Q 015301 49 SNDGSFFVAAS---------QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119 (409)
Q Consensus 49 s~~~~~l~t~~---------~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~ 119 (409)
|||+++++... ..+.+.|||++++.... +... ...+....|||+|+.++... ++.|.+++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~-l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP-LTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE-SS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE-CcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 67888777632 24679999999973332 2222 33678899999999999886 67899998877643
Q ss_pred ccccceeceeeeeeeecCCC----Cc-ceeeEEEEEcCCCCeEEEEEe
Q 015301 120 ESLANVTEIHKGLDFSADGD----ED-EFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~----~~-~~~v~~~~~~~~~~~l~~~~~ 162 (409)
..+..-. ... .+....+ +. -..-..+.||||+++|+....
T Consensus 76 ~~lT~dg--~~~-i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 76 TQLTTDG--EPG-IYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp EESES----TTT-EEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred EEecccc--cee-EEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 3222211 000 0000000 00 112356889999999887644
No 329
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.73 E-value=1.5e-08 Score=90.06 Aligned_cols=192 Identities=16% Similarity=0.215 Sum_probs=125.3
Q ss_pred CcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCC--eEEEeccccc
Q 015301 140 EDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDS--LCKVWDRRCF 217 (409)
Q Consensus 140 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~ 217 (409)
.+....+|++|+-+.+.|++|+..|.|+++++.+|.......+|.++|+.+.-+ .++..+++.+.-. -..+|++.
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs-~dgs~~Ltsss~S~PlsaLW~~~-- 1175 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPS-VDGSTQLTSSSSSSPLSALWDAS-- 1175 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccccccccccccc-CCcceeeeeccccCchHHHhccc--
Confidence 455679999999999999999999999999999999999999999999999988 7887777655433 46799974
Q ss_pred ccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCc
Q 015301 218 ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 297 (409)
Q Consensus 218 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (409)
..+...+.+.+ -.++.|+.....-+.|.......+||+.+...............+..
T Consensus 1176 -s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~----------------- 1233 (1516)
T KOG1832|consen 1176 -STGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSN----------------- 1233 (1516)
T ss_pred -cccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhc-----------------
Confidence 24444444432 35677876544445555556799999998544333221111111110
Q ss_pred cceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCC
Q 015301 298 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC 377 (409)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 377 (409)
....|+|+..+++ .|| .+||++..+.++.+...+..+ .-.|+|.|..++.-+.
T Consensus 1234 -------------------n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-- 1286 (1516)
T KOG1832|consen 1234 -------------------NLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-- 1286 (1516)
T ss_pred -------------------cccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech--
Confidence 1224666666665 344 467777766666654333222 2247777776665543
Q ss_pred eEEEEecCC
Q 015301 378 NIVRWEIPG 386 (409)
Q Consensus 378 ~i~iw~~~~ 386 (409)
|||+.+
T Consensus 1287 ---IwD~RT 1292 (1516)
T KOG1832|consen 1287 ---IWDMRT 1292 (1516)
T ss_pred ---hhhhHH
Confidence 566654
No 330
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=2.9e-06 Score=75.04 Aligned_cols=149 Identities=13% Similarity=0.172 Sum_probs=108.0
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeE
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 166 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 166 (409)
.+.+++++ +++|+.|+.+|.|++++....- ..... |.. . ..+|.++++|+.||.|
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~----------------~s~-~-----~~~Gey~asCS~DGkv 95 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFD----------------HSS-S-----ILEGEYVASCSDDGKV 95 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCcc-ccccc----------------ccc-c-----ccCCceEEEecCCCcE
Confidence 46666665 6899999999999999886542 11100 000 1 4589999999999999
Q ss_pred EEEECCCCeeeeEEcCCCCCeEEEEEeCC----CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC
Q 015301 167 YVYDLQANKCSLRIPAHKSDVNTVCFADE----TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD 242 (409)
Q Consensus 167 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 242 (409)
.|-.+-+.+....+. ...++.+++++|. ....+++|+..| +.++.-+-. .......+..-.++|.++.|.
T Consensus 96 ~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wl--gnk~~v~l~~~eG~I~~i~W~-- 169 (846)
T KOG2066|consen 96 VIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWL--GNKDSVVLSEGEGPIHSIKWR-- 169 (846)
T ss_pred EEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhh--cCccceeeecCccceEEEEec--
Confidence 999998888776665 4578999999942 257899999988 877764321 112222455667899999996
Q ss_pred CCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 243 GRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 243 ~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
|++++-++.+| |++||+.......
T Consensus 170 g~lIAWand~G-v~vyd~~~~~~l~ 193 (846)
T KOG2066|consen 170 GNLIAWANDDG-VKVYDTPTRQRLT 193 (846)
T ss_pred CcEEEEecCCC-cEEEeccccceee
Confidence 78888888777 9999998855433
No 331
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.72 E-value=3.4e-05 Score=65.95 Aligned_cols=251 Identities=14% Similarity=0.078 Sum_probs=129.1
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccc-ccceec------------eeeee-------------eeecC--C
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARES-LANVTE------------IHKGL-------------DFSAD--G 138 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~-~~~~~~------------~~~~~-------------~~~~~--~ 138 (409)
.|+.+.|.++..-|+++...|.|.+|.+...+... ...... ....+ .|.+. .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999999999999999999999886543321 000000 00000 01110 0
Q ss_pred CCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE--c------CCCCCeEEEEEeC----CC---CcEEEEe
Q 015301 139 DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI--P------AHKSDVNTVCFAD----ET---GHLIFSG 203 (409)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~------~~~~~v~~~~~~~----~~---~~~l~~~ 203 (409)
+...++|++++.|.-| ++++|..+|.+.|.|++....+..- . .....|+++.|.. .+ .-.+++|
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 1236789999998555 7899999999999999888776652 1 1345688888862 22 2478899
Q ss_pred eCCCeEEEecccccccCCceeee----eeccccceeEEE-EcCC-C-------------------CeEEEEeCCCcEEEe
Q 015301 204 SDDSLCKVWDRRCFISKGRANGV----LMGHLEGITFID-SRRD-G-------------------RYFISNGKDQTTKLW 258 (409)
Q Consensus 204 ~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~v~~~~-~~~~-~-------------------~~l~~~~~dg~i~iw 258 (409)
+..|.+.+|.+.-. ..+..... ...+.++|..+. ++.+ | .-++....+..++++
T Consensus 162 Tn~G~v~~fkIlp~-~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 162 TNSGNVLTFKILPS-SNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp ETTSEEEEEEEEE--GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred eCCCCEEEEEEecC-CCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 99999999987410 11211111 113445555444 2211 0 113333345567777
Q ss_pred eCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeee-cCCCCEEEEEeCCCeE
Q 015301 259 DIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY-STAQKYIYTGSSDNSV 337 (409)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~~~~dg~v 337 (409)
...+.+ ......... .....+.+-... ...+..|++-..+|.|
T Consensus 241 ~~~~~k----------------------------------~~~K~~~~~--~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i 284 (395)
T PF08596_consen 241 KPPKSK----------------------------------GAHKSFDDP--FLCSSASVVPTISRNGGYCLVCLFNNGSI 284 (395)
T ss_dssp -TT-------------------------------------EEEEE-SS---EEEEEEEEEEEE-EEEEEEEEEEETTSEE
T ss_pred eCCCCc----------------------------------ccceeeccc--cccceEEEEeecccCCceEEEEEECCCcE
Confidence 665521 111111110 011111110000 1235678888999999
Q ss_pred EEEEccCCceEEEeccCC----cceeeeEEecCcCeEEeecC
Q 015301 338 YIYDLVSGAQVAKLDFHN----APVRDCCWHPIYPMLISSSW 375 (409)
Q Consensus 338 ~i~d~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~s~~~ 375 (409)
++|.+...+.+..++.+. ..+...+++++|..++-.+.
T Consensus 285 ~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 285 RIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp EEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred EEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCc
Confidence 999999999988876532 35667788999997766654
No 332
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=1.6e-06 Score=77.14 Aligned_cols=331 Identities=10% Similarity=0.024 Sum_probs=169.8
Q ss_pred eEEecCceeEeecc-----ceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 7 VNYSGRGRFSAADS-----CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 7 ~~~s~dg~~~~~~~-----~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
..|.|..-+.+... ..-+..+.....|.+-..-.-.+++++|+|..-.|+.|-.-|.+.+|...+.+.... .
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv---~ 97 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV---V 97 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeee---c
Confidence 45666665544322 234455555555544333344467799999988899998889999999877643332 3
Q ss_pred ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCe-----
Q 015301 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQE----- 156 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----- 156 (409)
..|..+|..+.|||+|..++++..-|.+.+|............+..... +..-...+...++++.-
T Consensus 98 ~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel---------~~~ltl~cfRL~~~~Ee~~~la 168 (1416)
T KOG3617|consen 98 ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHEL---------NDQLTLWCFRLSYDREEKFKLA 168 (1416)
T ss_pred cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHh---------hceeeEEEEecCCChHHhhhhh
Confidence 3466699999999999999999999999999886432222111111100 00112455566666421
Q ss_pred -EEEEEecCeEE-EEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccce
Q 015301 157 -LVAAGSDNFIY-VYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGI 234 (409)
Q Consensus 157 -l~~~~~d~~i~-v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v 234 (409)
.++.+.+..+- .++.+......... |.+ .+++..++.++.+|+|+-.| +.+.......... .
T Consensus 169 KaaVtgDe~alD~~fnwk~~~a~rs~~-ksg--------v~~g~~F~~~~~~GtVyyvd-----q~g~~~~V~k~dS-~- 232 (1416)
T KOG3617|consen 169 KAAVTGDESALDEPFNWKESLAERSDE-KSG--------VPKGTEFLFAGKSGTVYYVD-----QNGRQRTVHKLDS-E- 232 (1416)
T ss_pred hhhccCchhhhcccccCccchhhcccc-ccC--------CCCCcEEEEEcCCceEEEEc-----CCCcEEEEEEccc-h-
Confidence 23333333332 22222111111111 111 16788888899999999888 2444433332211 1
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccc-ccc-cccccccccccccceeccccCccceeeeecccc-eee
Q 015301 235 TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR-LRD-YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV-LRT 311 (409)
Q Consensus 235 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 311 (409)
..+-|.+....++..-.+-++.++-............. ... ....-..++.+... + .++.... ...
T Consensus 233 vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEss-------G----vLr~~eKyg~e 301 (1416)
T KOG3617|consen 233 VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESS-------G----VLRKSEKYGLE 301 (1416)
T ss_pred HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccc-------c----cccCCcchhhh
Confidence 22334443333433333333333332221100000000 000 00000000000000 0 0000000 000
Q ss_pred eeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC-------ceEEEecc---CCcceeeeEEecCcCeEEeecCC
Q 015301 312 LIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG-------AQVAKLDF---HNAPVRDCCWHPIYPMLISSSWD 376 (409)
Q Consensus 312 ~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~-------~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~d 376 (409)
.-..+.+++++..+..|..|...|.+.+|--... +-...+++ ..+.|+.+.|.|-.+.++.-+..
T Consensus 302 ~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~ 376 (1416)
T KOG3617|consen 302 LGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEE 376 (1416)
T ss_pred cCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhh
Confidence 1122345577777899999999999999953221 22334433 35689999999976666555443
No 333
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.67 E-value=9.1e-05 Score=66.20 Aligned_cols=276 Identities=9% Similarity=0.069 Sum_probs=147.3
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeeccc---ccceEE--EEEeCCCCcEEEEEecCCEEEEEEcCCCcccccccee
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKA---LRWTIT--DTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVT 126 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~---~~~~v~--~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~ 126 (409)
+..+..++.++.+.-.|..+++.+.+...... ....+. .+... ++..++.++.++.|.-+|.++++..-.....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 34566677789999999988866544322111 000010 01111 2267778888999999999998765444332
Q ss_pred ceeeeeeeecCCCCcceeeE-EEEEcCCCCeEEEEE---------ecCeEEEEECCCCeeeeEEcCCCCC----------
Q 015301 127 EIHKGLDFSADGDEDEFGIF-SVKFSTDGQELVAAG---------SDNFIYVYDLQANKCSLRIPAHKSD---------- 186 (409)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~---------~d~~i~v~d~~~~~~~~~~~~~~~~---------- 186 (409)
..... ...+. ...+. + ..++.++ .++.+..+|..+|+.+...+.....
T Consensus 140 ~~~~~----------~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~ 207 (488)
T cd00216 140 DQVPP----------GYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPD 207 (488)
T ss_pred CCcCc----------ceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCC
Confidence 21000 00010 01111 2 3444443 3678999999999988776432110
Q ss_pred ----------e-EEEEEeCCCCcEEEEeeCCC------------------eEEEecccccccCCceeeeeeccccce---
Q 015301 187 ----------V-NTVCFADETGHLIFSGSDDS------------------LCKVWDRRCFISKGRANGVLMGHLEGI--- 234 (409)
Q Consensus 187 ----------v-~~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~~~~v--- 234 (409)
+ ...++. +.+..++.++.++ .+.-+|.. +++..-....-....
T Consensus 208 ~~~~~~~g~~vw~~pa~d-~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~----tG~~~W~~~~~~~~~~~~ 282 (488)
T cd00216 208 RQMWGPGGGTSWASPTYD-PKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD----TGKVKWFYQTTPHDLWDY 282 (488)
T ss_pred cceecCCCCCccCCeeEe-CCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC----CCCEEEEeeCCCCCCccc
Confidence 0 123333 3456777776665 67777754 555554433111100
Q ss_pred ---eEEEEc----CCCC---eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeee
Q 015301 235 ---TFIDSR----RDGR---YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK 304 (409)
Q Consensus 235 ---~~~~~~----~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (409)
....+. -++. .++.++.+|.+...|.++++..-......
T Consensus 283 ~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~------------------------------- 331 (488)
T cd00216 283 DGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE------------------------------- 331 (488)
T ss_pred ccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec-------------------------------
Confidence 000111 1233 57778889999999998855433221100
Q ss_pred cccceeeeeEEEEeeeecCCCCEEEE------------------EeCCCeEEEEEccCCceEEEeccCC--------cce
Q 015301 305 GHSVLRTLIRCYFSPEYSTAQKYIYT------------------GSSDNSVYIYDLVSGAQVAKLDFHN--------APV 358 (409)
Q Consensus 305 ~~~~~~~~~~~~~~~~~s~~~~~l~~------------------~~~dg~v~i~d~~~~~~~~~~~~~~--------~~v 358 (409)
..+..+| ..++. ...+|.+.-.|+.+++.+-+..... .+.
T Consensus 332 ------------~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~ 397 (488)
T cd00216 332 ------------QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPH 397 (488)
T ss_pred ------------cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcc
Confidence 0001111 11111 2245778888888887766654320 111
Q ss_pred eeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 359 RDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 359 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
..-.....+..|+.++.||.|+.+|..+++..
T Consensus 398 ~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 398 WGGSLATAGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred cCcceEecCCeEEEECCCCeEEEEECCCCcee
Confidence 11111124568888889999999999887764
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=6.7e-06 Score=73.44 Aligned_cols=201 Identities=12% Similarity=0.116 Sum_probs=126.8
Q ss_pred EEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCC-eEEEEEeCCCCcEEEEeeCCC-----eEEEecccccccCC-
Q 015301 149 KFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSD-VNTVCFADETGHLIFSGSDDS-----LCKVWDRRCFISKG- 221 (409)
Q Consensus 149 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~- 221 (409)
+|++++..++.|+.+|.|.+++- +-+.+..++.+... |..+... ...++|++.+.|+ .+++||+.....+.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~-~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYIL-NKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcc-cCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 46788889999999999988873 34445667777766 5555444 5557888877665 48999987432222
Q ss_pred -cee--eeeec-----cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceecc
Q 015301 222 -RAN--GVLMG-----HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK 293 (409)
Q Consensus 222 -~~~--~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (409)
.+. ..+.+ ...++.+++.+.+-+.+++|-.+|.|..+.-.-..
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R----------------------------- 158 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR----------------------------- 158 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh-----------------------------
Confidence 222 12222 24578899999998999999999999988532211
Q ss_pred ccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce-EEEeccCCcceeeeEEecCcCeEEe
Q 015301 294 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ-VAKLDFHNAPVRDCCWHPIYPMLIS 372 (409)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s 372 (409)
.+-.+.-..|.... .++.+.+-.+++.++-...-..|.+|.+....+ ...+..|..++.|-++++....++.
T Consensus 159 ---Drgsr~~~~~~~~~----pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIc 231 (933)
T KOG2114|consen 159 ---DRGSRQDYSHRGKE----PITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFIC 231 (933)
T ss_pred ---ccccceeeeccCCC----CceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEE
Confidence 01111111222222 233344444566533333345699999874442 4557778889999999876664665
Q ss_pred ecCCCeEEEEecCCCc
Q 015301 373 SSWDCNIVRWEIPGIG 388 (409)
Q Consensus 373 ~~~dg~i~iw~~~~~~ 388 (409)
++ +..|.+|+.+..+
T Consensus 232 a~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 232 AG-SEFLYFYDSDGRG 246 (933)
T ss_pred ec-CceEEEEcCCCcc
Confidence 54 3579999987543
No 335
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.59 E-value=5.8e-06 Score=70.97 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=60.5
Q ss_pred ceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 142 EFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 142 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
...|.+++++|+...++.|+.||.|.+||...+... .....-.++.++|+ |++.++++|+..|.+.+||+.
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWH-p~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWH-PDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEc-CCCcEEEEEcCCceEEEEEee
Confidence 336999999999999999999999999998766433 22345668999999 899999999999999999964
No 336
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.2e-05 Score=65.35 Aligned_cols=83 Identities=16% Similarity=0.125 Sum_probs=65.9
Q ss_pred ceeecCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCC-cEEEEEecCCEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ-RFLVYASICAIVNI 111 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~~ 111 (409)
..+.+|...|..++|||... ++..++.+.+|+|.|+++.......... ..+.+++|.-|. .+|..|-.+|.|.+
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~----~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY----NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc----CCceeeeeccCCcceeEEeccCceEEE
Confidence 35667889999999999887 7788899999999999988555443322 379999998765 56677778999999
Q ss_pred EEcCCCccc
Q 015301 112 VDVGSSARE 120 (409)
Q Consensus 112 w~~~~~~~~ 120 (409)
||++..+..
T Consensus 263 yD~R~~~~~ 271 (463)
T KOG1645|consen 263 YDMRQPEGP 271 (463)
T ss_pred EEccCCCch
Confidence 999876643
No 337
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.56 E-value=0.00011 Score=63.78 Aligned_cols=185 Identities=15% Similarity=0.106 Sum_probs=97.7
Q ss_pred eecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcC
Q 015301 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVG 115 (409)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~ 115 (409)
+....-....+.++|+|++++++ .||.-.|+......... .+.-....|.++++ +|+-...+.|.++.--
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~--------~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA--------FGSGLSFVWSSRNR-YAVLESSSTIKIYKNF 97 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE--------EEE-SEEEE-TSSE-EEEE-TTS-EEEEETT
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc--------cCceeEEEEecCcc-EEEEECCCeEEEEEcC
Confidence 34455568899999999999885 47788888844331111 12455678998554 6666668889996432
Q ss_pred CCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCC
Q 015301 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE 195 (409)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 195 (409)
+........... .+..+-. |..|...+ ++.|.+||+++++.+..+... +|..+.|+ +
T Consensus 98 ~~~~~k~i~~~~----------------~~~~If~---G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws-~ 154 (443)
T PF04053_consen 98 KNEVVKSIKLPF----------------SVEKIFG---GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWS-D 154 (443)
T ss_dssp EE-TT-----SS-----------------EEEEE----SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE--T
T ss_pred ccccceEEcCCc----------------ccceEEc---CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEE-C
Confidence 222211111111 1222322 77777665 458999999999999998743 38999999 8
Q ss_pred CCcEEEEeeCCCeEEEeccccc-----ccCC--ceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEE
Q 015301 196 TGHLIFSGSDDSLCKVWDRRCF-----ISKG--RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKL 257 (409)
Q Consensus 196 ~~~~l~~~~~dg~i~iwd~~~~-----~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 257 (409)
++++++..+.+ .+.+++.... ...+ .....+......|.+..|..+ .++-.... .++.
T Consensus 155 ~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY 219 (443)
T PF04053_consen 155 DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY 219 (443)
T ss_dssp TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence 88998888755 5777764310 0000 123333333567888888755 44444433 5655
No 338
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.52 E-value=4e-08 Score=84.13 Aligned_cols=208 Identities=15% Similarity=0.118 Sum_probs=132.9
Q ss_pred CCCeEEEEECCCC--CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC-CCcEEEEEe----cCCEEEEE
Q 015301 40 NSRVYTSQFSNDG--SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYAS----ICAIVNIV 112 (409)
Q Consensus 40 ~~~v~~~~~s~~~--~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~----~dg~i~~w 112 (409)
...+.|+++.-+. ..+++|..+|.|.+-.......... ....++....++++|++ |.+.||+|- .|..+.||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~-E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSA-EVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccc-eecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 4567788876544 4788999999999988765422211 12334556789999998 556677663 46689999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
|+.+.-..+... ..|.. +......+++|..+.+++++|.....+.++|++... .....-.+..+..+..
T Consensus 135 di~s~ltvPke~-------~~fs~---~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tV 203 (783)
T KOG1008|consen 135 DINSLLTVPKES-------PLFSS---STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITV 203 (783)
T ss_pred ecccccCCCccc-------ccccc---ccccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhccccee
Confidence 998773311111 11111 011235688999889999999888899999997322 1111223456677788
Q ss_pred eCCCCcEEEEeeCCCeEEEec-ccccccCCceeeeeecc----ccceeEEEEcCCCC-eEEEEe-CCCcEEEeeCCCC
Q 015301 193 ADETGHLIFSGSDDSLCKVWD-RRCFISKGRANGVLMGH----LEGITFIDSRRDGR-YFISNG-KDQTTKLWDIRKM 263 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~ 263 (409)
.|-.++++++-. ||.|.+|| .+. -..++..+... ...+..++|.|... .+++.. ..++|+++|+...
T Consensus 204 dp~~~nY~cs~~-dg~iAiwD~~rn---ienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 204 DPFSPNYFCSNS-DGDIAIWDTYRN---IENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred cCCCCCceeccc-cCceeeccchhh---hccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence 865888887765 99999999 431 22222222211 23488999998533 344444 4578999998753
No 339
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.50 E-value=5.9e-08 Score=83.15 Aligned_cols=203 Identities=14% Similarity=0.209 Sum_probs=129.7
Q ss_pred eeEEEEEcC--CCCeEEEEEecCeEEEEECCCCeee--eEEcCCCCCeEEEEEeCCCCcEEEEee----CCCeEEEeccc
Q 015301 144 GIFSVKFST--DGQELVAAGSDNFIYVYDLQANKCS--LRIPAHKSDVNTVCFADETGHLIFSGS----DDSLCKVWDRR 215 (409)
Q Consensus 144 ~v~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~i~iwd~~ 215 (409)
.+.|+++.- +...+++|..+|.|.+-.++...-. ...+++..+.++++|++-+.+.||+|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 366666655 3356788888999999887654332 235678899999999987888888874 35679999986
Q ss_pred ccccCCceeeeee-ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccc
Q 015301 216 CFISKGRANGVLM-GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 294 (409)
Q Consensus 216 ~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (409)
......+....+. +......+++|..+.+++++|.....+.++|++.....
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~---------------------------- 189 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS---------------------------- 189 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhh----------------------------
Confidence 4322222111222 23455668899988889999999999999999841110
Q ss_pred cCccceeeeecccceeeeeEEEEeeeecC-CCCEEEEEeCCCeEEEEEc-cCC-ceEEEeccC----CcceeeeEEecCc
Q 015301 295 PHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGSSDNSVYIYDL-VSG-AQVAKLDFH----NAPVRDCCWHPIY 367 (409)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~v~i~d~-~~~-~~~~~~~~~----~~~v~~~~~s~~~ 367 (409)
...+.. ..+.....+| .+.++++-. ||.|.+||. .+- +++..+... ...+..++|.|..
T Consensus 190 -----~~svnT--------k~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr 255 (783)
T KOG1008|consen 190 -----VSSVNT--------KYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR 255 (783)
T ss_pred -----hhhhhh--------hhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence 000000 0011123444 456776655 999999993 322 233333222 2248999999976
Q ss_pred C-eEEeecC-CCeEEEEecCCCc
Q 015301 368 P-MLISSSW-DCNIVRWEIPGIG 388 (409)
Q Consensus 368 ~-~l~s~~~-dg~i~iw~~~~~~ 388 (409)
. .|++... .++|+++++....
T Consensus 256 tglla~l~RdS~tIrlydi~~v~ 278 (783)
T KOG1008|consen 256 TGLLAVLSRDSITIRLYDICVVG 278 (783)
T ss_pred cchhhhhccCcceEEEecccccC
Confidence 6 6666654 4789999986543
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.47 E-value=7.7e-05 Score=64.73 Aligned_cols=219 Identities=14% Similarity=0.183 Sum_probs=113.5
Q ss_pred cceeeEEecCceeEeeccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecc
Q 015301 3 VGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK 82 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~ 82 (409)
-++.+.++|+|+|++..+......+.... ..- ...+.-...+|.+.++ +|+-...++|.|+.--....... ....
T Consensus 34 ~p~~ls~npngr~v~V~g~geY~iyt~~~--~r~-k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~-i~~~ 108 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEYEIYTALA--WRN-KAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKS-IKLP 108 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEEEEEETTT--TEE-EEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT------S
T ss_pred CCeeEEECCCCCEEEEEcCCEEEEEEccC--Ccc-cccCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceE-EcCC
Confidence 36889999999998875544444433111 111 1234456688988555 66666688899974322211111 1121
Q ss_pred cccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe
Q 015301 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (409)
. .+..+-. |..|...+. +.|.+||+.+++........ +|..+.|++++++++..+.
T Consensus 109 ~---~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~-----------------~vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 109 F---SVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS-----------------AVKYVIWSDDGELVALVTK 164 (443)
T ss_dssp S----EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS------------------E-EEEEE-TTSSEEEEE-S
T ss_pred c---ccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC-----------------CCcEEEEECCCCEEEEEeC
Confidence 1 2333332 777777764 48999999988765444332 3789999999999998875
Q ss_pred cCeEEEEECCCC-----------eeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccc
Q 015301 163 DNFIYVYDLQAN-----------KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL 231 (409)
Q Consensus 163 d~~i~v~d~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 231 (409)
+ .+.+++.... .....+..-...|.+.+|. .+ -++++ +.. .++.+- . .....+..-.
T Consensus 165 ~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~-~d-~fiYt-T~~-~lkYl~------~-Ge~~~i~~ld 232 (443)
T PF04053_consen 165 D-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWV-ED-CFIYT-TSN-HLKYLV------N-GETGIIAHLD 232 (443)
T ss_dssp --SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEE-TT-EEEEE--TT-EEEEEE------T-TEEEEEEE-S
T ss_pred C-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEE-cC-EEEEE-cCC-eEEEEE------c-CCcceEEEcC
Confidence 5 5777765433 0222333225778999998 44 44444 333 676633 2 2222333334
Q ss_pred cceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 232 EGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 232 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
.++.-+.+.++.+.+.....|+.+..+.+..
T Consensus 233 ~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 233 KPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp S--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred CceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 5677777888778888888999998887754
No 341
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.47 E-value=0.00047 Score=56.39 Aligned_cols=249 Identities=14% Similarity=0.121 Sum_probs=131.2
Q ss_pred eEEEEECCCCCEEEEEeC----------CCcEEEEEcCCCeeeeeeeecccccc----eEEEEEeCCCCcEEEEEec--C
Q 015301 43 VYTSQFSNDGSFFVAASQ----------ESNIKVYNVDKNWKIQKDIETKALRW----TITDTSLSPDQRFLVYASI--C 106 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~~~----------d~~i~vw~~~~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~--d 106 (409)
.-.+..|||++.+++++. .-.|.+||..+-.....+.....+.. ....++++.|++++++... .
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa 117 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA 117 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCC
Confidence 344678999999887542 34699999998755444333322111 1234578889988887643 4
Q ss_pred CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECC-CCeeeeEE----c
Q 015301 107 AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ-ANKCSLRI----P 181 (409)
Q Consensus 107 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~~~~~----~ 181 (409)
..|.|.|+...+......... +..+--+++ +.|.+-|.||.+.-..+. .|+...+. .
T Consensus 118 ~SVtVVDl~~~kvv~ei~~PG-----------------C~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~ 179 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVGEIDTPG-----------------CWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFD 179 (342)
T ss_dssp EEEEEEETTTTEEEEEEEGTS-----------------EEEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEEEEESS
T ss_pred CeEEEEECCCCceeeeecCCC-----------------EEEEEecCC-CceEEEecCCceEEEEECCCCCEeEeeccccC
Confidence 578889998877644333221 222222223 347777889999888886 45544322 1
Q ss_pred CCCCCe-EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec----------cccceeEEEEcCCCCeEEEEe
Q 015301 182 AHKSDV-NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG----------HLEGITFIDSRRDGRYFISNG 250 (409)
Q Consensus 182 ~~~~~v-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~ 250 (409)
....++ ..-++. ..+..++-.+.+|.|+--|+... .......+.. -.+.-.-+++++..+.|.+.-
T Consensus 180 ~~~dp~f~~~~~~-~~~~~~~F~Sy~G~v~~~dlsg~--~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 180 PDDDPLFEHPAYS-RDGGRLYFVSYEGNVYSADLSGD--SAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp TTTS-B-S--EEE-TTTTEEEEEBTTSEEEEEEETTS--SEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred CCCcccccccceE-CCCCeEEEEecCCEEEEEeccCC--cccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence 112222 233444 44555555788999999887521 1111111110 012233455655444444321
Q ss_pred C--------CC--cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeee
Q 015301 251 K--------DQ--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 320 (409)
Q Consensus 251 ~--------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (409)
. |+ .|-++|+.+ .+.+..+... ..+.++.
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t----------------------------------~krv~Ri~l~-------~~~~Si~ 295 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKT----------------------------------HKRVARIPLE-------HPIDSIA 295 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTT----------------------------------TEEEEEEEEE-------EEESEEE
T ss_pred cCCCCCCccCCceEEEEEECCC----------------------------------CeEEEEEeCC-------CccceEE
Confidence 1 11 344445444 2333333321 1233555
Q ss_pred ecCCCC-EEEEE-eCCCeEEEEEccCCceEEEecc
Q 015301 321 YSTAQK-YIYTG-SSDNSVYIYDLVSGAQVAKLDF 353 (409)
Q Consensus 321 ~s~~~~-~l~~~-~~dg~v~i~d~~~~~~~~~~~~ 353 (409)
.+.+.+ +|++. ..++.+.+||..+++.+.++..
T Consensus 296 Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 296 VSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 666554 55444 4579999999999999988874
No 342
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.45 E-value=0.00018 Score=57.04 Aligned_cols=206 Identities=12% Similarity=0.138 Sum_probs=110.9
Q ss_pred eeEEEEEcCCCC-eEEEEEecCeEEEEECCCCeeeeEEcCC-CCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCC
Q 015301 144 GIFSVKFSTDGQ-ELVAAGSDNFIYVYDLQANKCSLRIPAH-KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG 221 (409)
Q Consensus 144 ~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 221 (409)
.+..++|+|+.+ ++++....+.|..++. +|+.+..++.. .+....+++. .++.++++--.++.+.++++.......
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcEEEEEEecccccc
Confidence 489999999755 5666666788888886 47877777533 3678999998 777666666668999999874211111
Q ss_pred ce--eeee-----eccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccc
Q 015301 222 RA--NGVL-----MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 294 (409)
Q Consensus 222 ~~--~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (409)
.. ...+ ..++..+..++|+|.++.|+.+-...-..+|.++.......
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~-------------------------- 154 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFD-------------------------- 154 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS---------------------------
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccc--------------------------
Confidence 11 1111 13456689999999988888887776677777654110000
Q ss_pred cCccceeeeecccceeeeeEEEEeeeecC-CCCEEEEEeCCCeEEEEEccCCceEEEeccCC---------cceeeeEEe
Q 015301 295 PHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHN---------APVRDCCWH 364 (409)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~---------~~v~~~~~s 364 (409)
-................-...+.+.| .+.+++....+..|..+| .+|+++..+.-.. ..--.|+|.
T Consensus 155 ---~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d 230 (248)
T PF06977_consen 155 ---LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFD 230 (248)
T ss_dssp ----EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-
T ss_pred ---eeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEEC
Confidence 00000000000000001112334454 356777777888999999 6787766654222 245679999
Q ss_pred cCcCeEEeecCCCeEEEE
Q 015301 365 PIYPMLISSSWDCNIVRW 382 (409)
Q Consensus 365 ~~~~~l~s~~~dg~i~iw 382 (409)
++|++.++ ++-+..+++
T Consensus 231 ~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 231 PDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp TT--EEEE-ETTTEEEEE
T ss_pred CCCCEEEE-cCCceEEEe
Confidence 99874444 456666554
No 343
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.43 E-value=6.3e-05 Score=66.50 Aligned_cols=106 Identities=19% Similarity=0.133 Sum_probs=69.0
Q ss_pred eeEEEEEcCCCCeEEEEEe-cCeEEEEECCCCee------------eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEE
Q 015301 144 GIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKC------------SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCK 210 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 210 (409)
....+.++|||+++++++. +.+|.|+|+++.+. +.+.+. .......+|. .+++...+-..|..|.
T Consensus 322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFD-g~G~aytslf~dsqv~ 399 (635)
T PRK02888 322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFD-GRGNAYTTLFLDSQIV 399 (635)
T ss_pred CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEEC-CCCCEEEeEeecceeE
Confidence 4778999999999887766 88999999987552 333333 2334567887 7888888888999999
Q ss_pred Eecccccc------cCCceeeeeeccccce-----eEEEEcCCCCeEEEEeC
Q 015301 211 VWDRRCFI------SKGRANGVLMGHLEGI-----TFIDSRRDGRYFISNGK 251 (409)
Q Consensus 211 iwd~~~~~------~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~ 251 (409)
.|++.... .....+..+.-|-.+- ..=.-.|+|++|++...
T Consensus 400 kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 400 KWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred EEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 99975210 0012223233332222 22223678888887654
No 344
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.38 E-value=0.00051 Score=53.08 Aligned_cols=143 Identities=15% Similarity=-0.022 Sum_probs=91.8
Q ss_pred CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCee
Q 015301 97 QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC 176 (409)
Q Consensus 97 ~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 176 (409)
..+++.|+..+.+.--|..+++.......... +.+-+.- -|++++.|+..|.+++.+.++|+.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~R----------------iE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~ 85 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVR----------------IECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ 85 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCce----------------eeeeeEE-ECCEEEEEEccCcEEEEEecchhh
Confidence 45677778888888888888775443332221 2222222 466799999999999999999988
Q ss_pred eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEE
Q 015301 177 SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTK 256 (409)
Q Consensus 177 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 256 (409)
...+.. .+.|.+-+-..+++.++..|+.|++.+..|.+ ...++...+-..+...+-+..|-...|..+...|.+.
T Consensus 86 ~w~f~~-~~~vk~~a~~d~~~glIycgshd~~~yalD~~----~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 86 IWNFVI-LETVKVRAQCDFDGGLIYCGSHDGNFYALDPK----TYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred eeeeee-hhhhccceEEcCCCceEEEecCCCcEEEeccc----ccceEEecccCCceeccceecCCCceEEEEeccceEE
Confidence 877753 23344333334789999999999999999976 5555555444333334444555333455555556555
Q ss_pred EeeCC
Q 015301 257 LWDIR 261 (409)
Q Consensus 257 iwd~~ 261 (409)
--..+
T Consensus 161 avt~~ 165 (354)
T KOG4649|consen 161 AVTKN 165 (354)
T ss_pred EEccC
Confidence 44443
No 345
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.38 E-value=0.00015 Score=62.77 Aligned_cols=181 Identities=20% Similarity=0.206 Sum_probs=105.8
Q ss_pred eeEEEEEcCCCCeEEEEEe---c-CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE-EEeeCCCeE--EEecccc
Q 015301 144 GIFSVKFSTDGQELVAAGS---D-NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI-FSGSDDSLC--KVWDRRC 216 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~---d-~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i--~iwd~~~ 216 (409)
.+..-+|+|+++.++.... . ..+.++|+++++....+. ..+.-...+|+ |+++.| ++...||.. .+.|+.
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fs-pDG~~l~f~~~rdg~~~iy~~dl~- 270 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFS-PDGSKLAFSSSRDGSPDIYLMDLD- 270 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCC-CCCCEEEEEECCCCCccEEEEcCC-
Confidence 4677789999887665532 2 469999999887655543 23334567899 555554 556667764 455553
Q ss_pred cccCCceeeeeeccccceeEEEEcCCCCeEEEEeC-CCc--EEEeeCCCCcccccccccccccccccccccccccceecc
Q 015301 217 FISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQT--TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK 293 (409)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (409)
... ...+..-.+.-..-.|+|||+.++..+. .|. |.++|.+...
T Consensus 271 ---~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~----------------------------- 317 (425)
T COG0823 271 ---GKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ----------------------------- 317 (425)
T ss_pred ---CCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc-----------------------------
Confidence 222 3333333333346679999998887654 454 4444444311
Q ss_pred ccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC-Ce--EEEEEccCCceEEEeccCCcceeeeEEecCcCeE
Q 015301 294 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD-NS--VYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPML 370 (409)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g~--v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 370 (409)
...+.... .....+.+||||++++..+.. |. |.+.|+.++..+..+. +......-.|.++++.+
T Consensus 318 ------~~riT~~~------~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i 384 (425)
T COG0823 318 ------VTRLTFSG------GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMI 384 (425)
T ss_pred ------eeEeeccC------CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceE
Confidence 11111111 111266799999999887753 44 6777776665444443 33344456777887755
Q ss_pred Eee
Q 015301 371 ISS 373 (409)
Q Consensus 371 ~s~ 373 (409)
+..
T Consensus 385 ~~~ 387 (425)
T COG0823 385 MFS 387 (425)
T ss_pred EEe
Confidence 543
No 346
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.33 E-value=0.0016 Score=56.60 Aligned_cols=193 Identities=13% Similarity=0.095 Sum_probs=100.3
Q ss_pred EEEECCCCCEEEEEeCC----------C-cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 45 TSQFSNDGSFFVAASQE----------S-NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~~d----------~-~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
-++.+|.|..+|....+ . .|.||+.... .+.... ... +.|.++.|+.+.. |++-..||.++++|
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~-ll~~i~-w~~--~~iv~~~wt~~e~-LvvV~~dG~v~vy~ 107 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGK-LLSSIP-WDS--GRIVGMGWTDDEE-LVVVQSDGTVRVYD 107 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCC-EeEEEE-ECC--CCEEEEEECCCCe-EEEEEcCCEEEEEe
Confidence 34566767666665443 2 4999987655 444432 222 4899999998654 55666899999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCe-eeeEE---cCCCC----
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK-CSLRI---PAHKS---- 185 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~---~~~~~---- 185 (409)
+.... ........... .-....+....+..+| ++.-..++.+.+..-.... ....+ +....
T Consensus 108 ~~G~~---~fsl~~~i~~~------~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~ 176 (410)
T PF04841_consen 108 LFGEF---QFSLGEEIEEE------KVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHW 176 (410)
T ss_pred CCCce---eechhhhcccc------CcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCccccccc
Confidence 86443 11111100000 0001112233344455 3333344555544322211 11111 11000
Q ss_pred --CeEE-EEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 186 --DVNT-VCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 186 --~v~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
.... ..++ .+....+....++.+.+.+-. .... + ...+++..++.||++++++.-..+|.+.+.+..-
T Consensus 177 ~~~~~~i~~l~-~~~~~~i~~~~g~~i~~i~~~----~~~~---i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 177 WPSWTVIPLLS-SDRVVEILLANGETIYIIDEN----SFKQ---I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred ccccccceEee-cCcceEEEEecCCEEEEEEcc----cccc---c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence 1111 1233 344444444555666644421 1111 1 1246899999999999999999999988886543
No 347
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.32 E-value=4.3e-05 Score=67.03 Aligned_cols=139 Identities=13% Similarity=0.095 Sum_probs=98.4
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeE
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 166 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 166 (409)
.|.--+++..+++++.|+.-|.+++|+-..+.......-. ....+.....+++..++|.|+..|.|
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~--------------~~~~~~~~~vs~~e~lvAagt~~g~V 100 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG--------------ATGITCVRSVSSVEYLVAAGTASGRV 100 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccC--------------ccceEEEEEecchhHhhhhhcCCceE
Confidence 5666667778999999999999999998877654333211 12246677888899999999999999
Q ss_pred EEEECCCCeeeeE-E-----cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEc
Q 015301 167 YVYDLQANKCSLR-I-----PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240 (409)
Q Consensus 167 ~v~d~~~~~~~~~-~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (409)
.++-+....+... + +.|...|++++|+ +++..+++|...|+|..-.+.....-....+.+....+.|..+.+.
T Consensus 101 ~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws-~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 101 SVFQLNKELPRDLDYVTPCDKSHKCRVTALEWS-KNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred EeehhhccCCCcceeeccccccCCceEEEEEec-ccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 9998876432211 1 3478899999999 9999999999999998887652111112223333345667677665
No 348
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.31 E-value=0.00026 Score=61.26 Aligned_cols=155 Identities=19% Similarity=0.187 Sum_probs=96.3
Q ss_pred eEEEEEeCCCCcEEEEEe---cC-CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe
Q 015301 87 TITDTSLSPDQRFLVYAS---IC-AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~---~d-g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (409)
.+..-+|+|+++.++... .. ..+.++++.+++......... .-..-+|+|||+.|+....
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g----------------~~~~P~fspDG~~l~f~~~ 257 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG----------------NNGAPAFSPDGSKLAFSSS 257 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC----------------ccCCccCCCCCCEEEEEEC
Confidence 677789999998877653 23 468999999887655554222 2345689999998877654
Q ss_pred -cC--eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEE-eeCCCeEEEecccccccCCceeeeeeccccceeEEE
Q 015301 163 -DN--FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFS-GSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 238 (409)
Q Consensus 163 -d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (409)
|| .|+++|+.++... .+....+.-+.-.|+ |+|+.++- .+..|.-.||-.. ..+.....+......-..-.
T Consensus 258 rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~s-pdG~~ivf~Sdr~G~p~I~~~~---~~g~~~~riT~~~~~~~~p~ 332 (425)
T COG0823 258 RDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWS-PDGSKIVFTSDRGGRPQIYLYD---LEGSQVTRLTFSGGGNSNPV 332 (425)
T ss_pred CCCCccEEEEcCCCCcce-ecccCCccccCccCC-CCCCEEEEEeCCCCCcceEEEC---CCCCceeEeeccCCCCcCcc
Confidence 44 5777788776633 344333333466788 67766655 4456665555443 12333333433333333677
Q ss_pred EcCCCCeEEEEeCC-Cc--EEEeeCCC
Q 015301 239 SRRDGRYFISNGKD-QT--TKLWDIRK 262 (409)
Q Consensus 239 ~~~~~~~l~~~~~d-g~--i~iwd~~~ 262 (409)
|+|||++|+..+.. |. |.+.|+.+
T Consensus 333 ~SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 333 WSPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred CCCCCCEEEEEeccCCceeeEEeccCC
Confidence 99999999887753 43 44555444
No 349
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.29 E-value=0.0022 Score=56.49 Aligned_cols=201 Identities=18% Similarity=0.189 Sum_probs=106.5
Q ss_pred eEEEEECCCCCEEEEE-eCC----CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC-----------
Q 015301 43 VYTSQFSNDGSFFVAA-SQE----SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC----------- 106 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~-~~d----~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----------- 106 (409)
+....+||||+++|.+ +.. ..++++|+++++.+...+.... ...+.|.++++.|+....+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~----~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK----FSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE----SEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc----cceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 3467899999998854 333 4599999999965544322211 2239999998887766532
Q ss_pred CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe---c-CeEEEEECCCC----eeee
Q 015301 107 AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---D-NFIYVYDLQAN----KCSL 178 (409)
Q Consensus 107 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d-~~i~v~d~~~~----~~~~ 178 (409)
..|+.|++.+............. .......+..++++++|+.... + ..+.+.++..+ ....
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~-----------~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~ 270 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPD-----------EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPK 270 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TT-----------CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEE
T ss_pred cEEEEEECCCChHhCeeEEeecC-----------CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcE
Confidence 34788888776543221111110 0112567888999999876544 2 46888888764 2233
Q ss_pred EEcCCCCCeE-EEEEeCCCCcEEEEee---CCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEe-CCC
Q 015301 179 RIPAHKSDVN-TVCFADETGHLIFSGS---DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG-KDQ 253 (409)
Q Consensus 179 ~~~~~~~~v~-~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg 253 (409)
.+......+. .+... ++.+++... ..+.|.-.++..... ......+..+...+.-..+...+.+|+... .++
T Consensus 271 ~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~-~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~ 347 (414)
T PF02897_consen 271 LLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSP-AEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG 347 (414)
T ss_dssp EEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSG-GGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT
T ss_pred EEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEeccccccc-ccceeEEcCCCCceeEEEEEEECCEEEEEEEECC
Confidence 3333333443 34333 444444432 235666666542111 012224555555333233333355555443 343
Q ss_pred --cEEEeeCC
Q 015301 254 --TTKLWDIR 261 (409)
Q Consensus 254 --~i~iwd~~ 261 (409)
.|+++++.
T Consensus 348 ~~~l~v~~~~ 357 (414)
T PF02897_consen 348 SSRLRVYDLD 357 (414)
T ss_dssp EEEEEEEETT
T ss_pred ccEEEEEECC
Confidence 67888877
No 350
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.29 E-value=0.0016 Score=58.35 Aligned_cols=258 Identities=12% Similarity=0.044 Sum_probs=131.4
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC--CCcEEEEEe---------cCCEEEEEEcCCCcccc
Q 015301 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP--DQRFLVYAS---------ICAIVNIVDVGSSARES 121 (409)
Q Consensus 53 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~---------~dg~i~~w~~~~~~~~~ 121 (409)
..++.++.++.|+-+|.++++.+.+...... ...-..+.-+| .+..+++++ .++.+..+|..+++..-
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~-~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQ-VPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCC-cCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 5777788899999999999876655332211 00000111112 124454543 36788999998887654
Q ss_pred ccceeceeeeeeeecCCC-----Ccc-eee-EEEEEcCCCCeEEEEEecC------------------eEEEEECCCCee
Q 015301 122 LANVTEIHKGLDFSADGD-----EDE-FGI-FSVKFSTDGQELVAAGSDN------------------FIYVYDLQANKC 176 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~-----~~~-~~v-~~~~~~~~~~~l~~~~~d~------------------~i~v~d~~~~~~ 176 (409)
......... ........ .+. ..+ ...++.+.+..+++++.++ .|.-+|.++++.
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 190 RFYTTEPDP-NAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred EeeccCCCc-CCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 433321100 00000000 000 011 1234555566777776554 799999999999
Q ss_pred eeEEcCCCCCe------EEEEEe---CCCC---cEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCC
Q 015301 177 SLRIPAHKSDV------NTVCFA---DETG---HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR 244 (409)
Q Consensus 177 ~~~~~~~~~~v------~~~~~~---~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 244 (409)
+...+.-.... ....+. +-++ ..++.++.+|.+...|.+ +++.+...... ...++.+| .
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~----tG~~~W~~~~~---~~~~~~~~--~ 339 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRT----TGKLISARPEV---EQPMAYDP--G 339 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECC----CCcEeeEeEee---ccccccCC--c
Confidence 88764211111 111111 0123 267888899999999965 66655543221 11123333 2
Q ss_pred eEEEE------------------eCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecc
Q 015301 245 YFISN------------------GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGH 306 (409)
Q Consensus 245 ~l~~~------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (409)
.+..+ ..+|.+.-.|+.+++..-....... .....+...
T Consensus 340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~-----------------------~~~~~~g~~ 396 (488)
T cd00216 340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTI-----------------------RDSWNIGFP 396 (488)
T ss_pred eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcc-----------------------ccccccCCc
Confidence 22221 1245666666666432221110000 000000000
Q ss_pred cceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc
Q 015301 307 SVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF 353 (409)
Q Consensus 307 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 353 (409)
. .. -.+. ..+.+|++++.||.|+.+|.++|+.+.+.+.
T Consensus 397 ~-----~~--~~~~--~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 397 H-----WG--GSLA--TAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred c-----cC--cceE--ecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 0 00 0011 1367899999999999999999999988764
No 351
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.26 E-value=0.00017 Score=61.77 Aligned_cols=223 Identities=12% Similarity=0.015 Sum_probs=112.9
Q ss_pred eeEEEEEcCCCCeEEEEEecCeEEEEECCCCee-------------------------------------------eeEE
Q 015301 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC-------------------------------------------SLRI 180 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-------------------------------------------~~~~ 180 (409)
.|+.+.|+++...|++|...|.|.+|.....+. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 488999999988899999999999986532110 1112
Q ss_pred cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeee--eec------cccceeEEEEcC-----CC---C
Q 015301 181 PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV--LMG------HLEGITFIDSRR-----DG---R 244 (409)
Q Consensus 181 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~------~~~~v~~~~~~~-----~~---~ 244 (409)
....++|++++.+ +--+++.|..+|.+.|.|+| ....+.. +.. ....++++.|.. |+ -
T Consensus 83 ~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~R----GPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 83 DAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLR----GPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp ---S-SEEEEEE---BTSEEEEEETTSEEEEEETT----TTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred eccCCcEeEEecC--CCcEEEEEecCCcEEEEECC----CCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence 2346889999987 66699999999999999988 2222222 111 234577777752 33 3
Q ss_pred eEEEEeCCCcEEEeeCCCCccc-ccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEee---e
Q 015301 245 YFISNGKDQTTKLWDIRKMSSN-TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSP---E 320 (409)
Q Consensus 245 ~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 320 (409)
.+++|...|.+.+|.+.-.... ............+ ..-..+..+....... ....-. .
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~---------------~~i~~I~~i~~~~G~~---a~At~~~~~~ 218 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHD---------------SPILSIIPINADTGES---ALATISAMQG 218 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS-------------------EEEEEETTT--B----B-BHHHHHG
T ss_pred EEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCC---------------CceEEEEEEECCCCCc---ccCchhHhhc
Confidence 6888999999999988521110 0000000000000 0000011110000000 000000 0
Q ss_pred ecC--CCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEe-----cCcCeEEeecCCCeEEEEecCCCccc
Q 015301 321 YST--AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWH-----PIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 321 ~s~--~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
.++ .-.-++....+..++++...+.+.........-....+.+- ..+..|++-..+|.|+++.++..++.
T Consensus 219 l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 219 LSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp GGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred cccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence 000 01123333446679999998887766554222233444552 34558888889999999999987664
No 352
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.24 E-value=0.00024 Score=47.50 Aligned_cols=101 Identities=16% Similarity=0.213 Sum_probs=68.5
Q ss_pred eEEEEEcC---CC-CeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccC
Q 015301 145 IFSVKFST---DG-QELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK 220 (409)
Q Consensus 145 v~~~~~~~---~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 220 (409)
|+++++.. +| +.|++|+.|..|++|+- .+.+..+.. ...|++++-. . +..++.+..+|+|-+|+ .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~-~-~~~F~Y~l~NGTVGvY~------~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSL-G-GGRFAYALANGTVGVYD------R 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEc-C-CCEEEEEecCCEEEEEe------C
Confidence 45555554 32 57999999999999984 456666663 5678888877 3 36789999999999998 3
Q ss_pred CceeeeeeccccceeEEEE-cCCC---CeEEEEeCCCcEEE
Q 015301 221 GRANGVLMGHLEGITFIDS-RRDG---RYFISNGKDQTTKL 257 (409)
Q Consensus 221 ~~~~~~~~~~~~~v~~~~~-~~~~---~~l~~~~~dg~i~i 257 (409)
...+...+.... +.++.+ ..++ ..|++|-.+|.|-+
T Consensus 71 ~~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 71 SQRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred cceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 444444443333 555554 3332 26888888887743
No 353
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.21 E-value=0.0015 Score=54.01 Aligned_cols=148 Identities=11% Similarity=0.025 Sum_probs=88.9
Q ss_pred CCCcEEEEEecCCEEEEEEcCCC-ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCC
Q 015301 95 PDQRFLVYASICAIVNIVDVGSS-ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA 173 (409)
Q Consensus 95 ~~~~~l~~~~~dg~i~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 173 (409)
..++.|+.|+.+| +.+++.... ....... ...|..+...|+-+.+++-+ |+.+.++++..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~-----------------~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~ 65 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK-----------------LSSITQLSVLPELNLLLVLS-DGQLYVYDLDS 65 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee-----------------cceEEEEEEecccCEEEEEc-CCccEEEEchh
Confidence 3578899998888 889988222 1111111 11488899998877766664 59999999876
Q ss_pred CeeeeE--------------EcCCCCCeEEEE-EeCCCCcEEEEeeCCCeEEEecccccccCC-ceeeeeeccccceeEE
Q 015301 174 NKCSLR--------------IPAHKSDVNTVC-FADETGHLIFSGSDDSLCKVWDRRCFISKG-RANGVLMGHLEGITFI 237 (409)
Q Consensus 174 ~~~~~~--------------~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~v~~~ 237 (409)
-..... .......+...+ -....+...++......|.+|......... ...+.+. -.+.+..+
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i 144 (275)
T PF00780_consen 66 LEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSI 144 (275)
T ss_pred hccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEE
Confidence 544331 111233445554 112344444444555689999876321222 3334433 34778889
Q ss_pred EEcCCCCeEEEEeCCCcEEEeeCCCCcc
Q 015301 238 DSRRDGRYFISNGKDQTTKLWDIRKMSS 265 (409)
Q Consensus 238 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 265 (409)
+|. ++.++.+..++ ..+.|+.+...
T Consensus 145 ~~~--~~~i~v~~~~~-f~~idl~~~~~ 169 (275)
T PF00780_consen 145 AFL--GNKICVGTSKG-FYLIDLNTGSP 169 (275)
T ss_pred EEe--CCEEEEEeCCc-eEEEecCCCCc
Confidence 998 55677776554 88889886544
No 354
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.15 E-value=0.00097 Score=60.50 Aligned_cols=189 Identities=15% Similarity=0.153 Sum_probs=105.1
Q ss_pred CCCCeEEEEECCCCCEEEEEe------CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC-CEEEE
Q 015301 39 MNSRVYTSQFSNDGSFFVAAS------QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC-AIVNI 111 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~------~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~~ 111 (409)
....+...++||||+.+|... .|+.-.||-...+........ +. ..+.-.|+|+|+.|.+.... ..+++
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~--g~--~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE--GH--SLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec--CC--CCCCceECCCCCceEEEecCcceEEE
Confidence 334688999999999887654 244334443332222222221 11 36778999998888777533 22222
Q ss_pred E-----------EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEE---EECCCCeee
Q 015301 112 V-----------DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYV---YDLQANKCS 177 (409)
Q Consensus 112 w-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v---~d~~~~~~~ 177 (409)
. +++.++... .....|..+.|||||..++... ++.|++ -....|+..
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~------------------~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~ 484 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS------------------RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYA 484 (591)
T ss_pred eccCCCceEEEEeccCchhhh------------------ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCcee
Confidence 2 222221111 1123599999999999988765 577877 444455411
Q ss_pred e----EE-cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec--cccceeEEEEcCCCCeEEEEe
Q 015301 178 L----RI-PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG--HLEGITFIDSRRDGRYFISNG 250 (409)
Q Consensus 178 ~----~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~ 250 (409)
. .+ ..-...+.++.|. .++.+ +++..++...+|.+.. .+.....+.. ...++..++-+++ .++...
T Consensus 485 l~~~~~l~~~l~~~~~~l~W~-~~~~L-~V~~~~~~~~v~~v~v---DG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~ 557 (591)
T PRK13616 485 LTNPREVGPGLGDTAVSLDWR-TGDSL-VVGRSDPEHPVWYVNL---DGSNSDALPSRNLSAPVVAVAASPS--TVYVTD 557 (591)
T ss_pred ecccEEeecccCCccccceEe-cCCEE-EEEecCCCCceEEEec---CCccccccCCCCccCceEEEecCCc--eEEEEc
Confidence 1 12 2233346889998 66664 4556555555666531 1222222122 3566777777763 455556
Q ss_pred CCCcEEE
Q 015301 251 KDQTTKL 257 (409)
Q Consensus 251 ~dg~i~i 257 (409)
.+|.+.+
T Consensus 558 ~~g~~~l 564 (591)
T PRK13616 558 ARAVLQL 564 (591)
T ss_pred CCceEEe
Confidence 6664433
No 355
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.12 E-value=0.004 Score=52.71 Aligned_cols=217 Identities=14% Similarity=0.137 Sum_probs=115.7
Q ss_pred CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC----CCeEEEEEe---------c-CeEEEEECC
Q 015301 107 AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD----GQELVAAGS---------D-NFIYVYDLQ 172 (409)
Q Consensus 107 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~---------d-~~i~v~d~~ 172 (409)
..|++.|..+.+........... +...+..+.+..+ ..+|++|+. . |.|.++++.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E-----------~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~ 70 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNE-----------HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEIS 70 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTE-----------EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEEC
T ss_pred cEEEEEeCCCCeEEEEEECCCCc-----------eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEE
Confidence 35777777666544333322211 1112344444432 567887765 2 889999998
Q ss_pred CC----eeeeEE--cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccc--cceeEEEEcCCCC
Q 015301 173 AN----KCSLRI--PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL--EGITFIDSRRDGR 244 (409)
Q Consensus 173 ~~----~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~ 244 (409)
.. ..+..+ ....++|++++-. ++. |+++. .+.|.+|++. ....+.....+. ..+.++... ++
T Consensus 71 ~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~----~~~~l~~~~~~~~~~~i~sl~~~--~~ 140 (321)
T PF03178_consen 71 ESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLD----NSKTLLKKAFYDSPFYITSLSVF--KN 140 (321)
T ss_dssp SS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEE----TTSSEEEEEEE-BSSSEEEEEEE--TT
T ss_pred cccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEcc----CcccchhhheecceEEEEEEecc--cc
Confidence 84 112211 2357889999877 444 43333 4789999986 222122222222 345555544 66
Q ss_pred eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCC
Q 015301 245 YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA 324 (409)
Q Consensus 245 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 324 (409)
+++.|.....+.++..+.. ...+..+...... ..+.+..+-++
T Consensus 141 ~I~vgD~~~sv~~~~~~~~---------------------------------~~~l~~va~d~~~----~~v~~~~~l~d 183 (321)
T PF03178_consen 141 YILVGDAMKSVSLLRYDEE---------------------------------NNKLILVARDYQP----RWVTAAEFLVD 183 (321)
T ss_dssp EEEEEESSSSEEEEEEETT---------------------------------TE-EEEEEEESS-----BEEEEEEEE-S
T ss_pred EEEEEEcccCEEEEEEEcc---------------------------------CCEEEEEEecCCC----ccEEEEEEecC
Confidence 8999988888888855431 1112222221111 12334445445
Q ss_pred CCEEEEEeCCCeEEEEEccC-------Cc--e--EEEeccCCcceeee---EEecC--cC------eEEeecCCCeEEEE
Q 015301 325 QKYIYTGSSDNSVYIYDLVS-------GA--Q--VAKLDFHNAPVRDC---CWHPI--YP------MLISSSWDCNIVRW 382 (409)
Q Consensus 325 ~~~l~~~~~dg~v~i~d~~~-------~~--~--~~~~~~~~~~v~~~---~~s~~--~~------~l~s~~~dg~i~iw 382 (409)
++.++++..+|.+.++.... +. . +..+. ....|+++ ++.|. +. .++-++.+|.|...
T Consensus 184 ~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 184 EDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 56899999999999998763 12 2 22332 34567777 55552 21 37777889998843
No 356
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.12 E-value=0.0024 Score=50.63 Aligned_cols=173 Identities=13% Similarity=0.125 Sum_probs=115.3
Q ss_pred eecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcC
Q 015301 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVG 115 (409)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~ 115 (409)
+.|-...|.++.|+|+.+.|++......-.||=...|..+.. ....+.. ....+.+..++++.++--.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirt-iPL~g~~-DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRT-IPLTGFS-DPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEE-ecccccC-ChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 456666699999999999998888777777776555644433 3333322 45678888888888888889999999887
Q ss_pred CCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeee---eEEcCC-------CC
Q 015301 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCS---LRIPAH-------KS 185 (409)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---~~~~~~-------~~ 185 (409)
........... .+.+..... ...+...++|.|....|..+-...-+.|+........ .....+ -.
T Consensus 159 ~~t~~~~~~~~----~i~L~~~~k-~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~ 233 (316)
T COG3204 159 ADTTVISAKVQ----KIPLGTTNK-KNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVL 233 (316)
T ss_pred CCccEEeccce----EEeccccCC-CCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEee
Confidence 66432222211 111111111 1446888999999888888888777777766533211 111111 24
Q ss_pred CeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 186 DVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 186 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
.|.++.|++..+.+++-+.+++.+.-.|..
T Consensus 234 DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 234 DVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred ccccceecCCCCcEEEEecCCceEEEEecC
Confidence 578889998888899999899988888863
No 357
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.10 E-value=0.0055 Score=53.43 Aligned_cols=199 Identities=11% Similarity=0.078 Sum_probs=98.1
Q ss_pred eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccc--cCCceeeeeeccccceeEEEEcCC
Q 015301 165 FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI--SKGRANGVLMGHLEGITFIDSRRD 242 (409)
Q Consensus 165 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~ 242 (409)
.|.+|+. .|+.+.++.-..+.+.++.|+ . ...|++...||.+++||+.... ..+.......-....+....+..+
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt-~-~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWT-D-DEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEEC-C-CCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCC
Confidence 5999996 466677665445899999998 4 4556677899999999974111 000001001111111222233334
Q ss_pred CCeEEEEeCCCcEEEeeCCCCc-ccc---ccccccccccccccc----ccccccceeccccCccceeeeecccc-eeeee
Q 015301 243 GRYFISNGKDQTTKLWDIRKMS-SNT---TDNSRLRDYDWDYRW----MEYPSYARRLKHPHDQSLATYKGHSV-LRTLI 313 (409)
Q Consensus 243 ~~~l~~~~~dg~i~iwd~~~~~-~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 313 (409)
|-.++ ..++.+.+.+--... ... ..........+.... .........+....+..+..+..+.. .....
T Consensus 139 GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~i~~~ 216 (410)
T PF04841_consen 139 GIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQIDSD 216 (410)
T ss_pred CEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccccccCC
Confidence 53333 334444333221111 000 000000000000000 00011111222222333333332221 00011
Q ss_pred EEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccC-CcceeeeEEecCcC
Q 015301 314 RCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH-NAPVRDCCWHPIYP 368 (409)
Q Consensus 314 ~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~ 368 (409)
..+..++.||++++||.-..+|.+.+.+..-.+.+.++... ......+.|.-+..
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 24567789999999999999999999987666666666543 34567778876544
No 358
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.10 E-value=1.1e-05 Score=43.39 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=34.4
Q ss_pred CceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 345 GAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 345 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
++++..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778899999999999999999999999999996
No 359
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.0059 Score=52.84 Aligned_cols=261 Identities=17% Similarity=0.174 Sum_probs=157.2
Q ss_pred CeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEE-EEecCCEEEEEEcCCCcc
Q 015301 42 RVYTSQFSNDGSFFVAAS-QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSAR 119 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~~w~~~~~~~ 119 (409)
....+...|++..+.... ....+..-+.... .......... .....++.++.++.+. ....++.|.+.|..+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n-~~~~~~~~g~--~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSN-TVTQSLSVGG--VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccc-eeeeeccCCC--ccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence 566778888886554433 2224555554421 2111111111 2456778888887544 445568899999665554
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe---cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCC
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADET 196 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 196 (409)
........ ....++++++++.+.++.. ++.+.+.|-.+.+..........+ ..+++. ++
T Consensus 109 ~~~~~vG~----------------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~-p~ 170 (381)
T COG3391 109 LGSIPVGL----------------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVD-PD 170 (381)
T ss_pred eeEeeecc----------------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEEC-CC
Confidence 33222221 3667999999988887766 689999999999888876544444 899999 77
Q ss_pred CcEEEEee-CCCeEEEecccccccCCceee-e---eeccccceeEEEEcCCCCeEEEEeCC---CcEEEeeCCCCccccc
Q 015301 197 GHLIFSGS-DDSLCKVWDRRCFISKGRANG-V---LMGHLEGITFIDSRRDGRYFISNGKD---QTTKLWDIRKMSSNTT 268 (409)
Q Consensus 197 ~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~---~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~ 268 (409)
++.++... .++.+.+.|.. ...... . ...-......+.++|++.++.+.... +.+...|..+......
T Consensus 171 g~~vyv~~~~~~~v~vi~~~----~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 171 GNKVYVTNSDDNTVSVIDTS----GNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCeEEEEecCCCeEEEEeCC----CcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 77555544 78999999954 222221 0 11122334668899999976655443 5788888776221111
Q ss_pred ccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC-CeEEEEEccCCce
Q 015301 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD-NSVYIYDLVSGAQ 347 (409)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g~v~i~d~~~~~~ 347 (409)
. ..... . .......+|+|+.+.+.... +.+.+.|..+.+.
T Consensus 247 ~---------------------------------~~~~~-----~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 247 D---------------------------------LPVGS-----G-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred c---------------------------------ccccc-----C-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 0 00000 0 11233577889988888554 8899999988877
Q ss_pred EEEeccCCc---ceeeeEEecC
Q 015301 348 VAKLDFHNA---PVRDCCWHPI 366 (409)
Q Consensus 348 ~~~~~~~~~---~v~~~~~s~~ 366 (409)
......... .+..+++.+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 288 VKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred eeeecccccccccceeccceee
Confidence 766543322 3445555543
No 360
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.01 E-value=0.01 Score=53.59 Aligned_cols=196 Identities=12% Similarity=0.139 Sum_probs=105.4
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccc-cceE-------EEEEeCCCCcEEEEEecCCEEEEEEcCCCcccccc
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKAL-RWTI-------TDTSLSPDQRFLVYASICAIVNIVDVGSSARESLA 123 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~-~~~v-------~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 123 (409)
+..+++++.++.|+-.|..+++.+.+....... .... ..+++ .+..+++++.++.+.-.|..+++..-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 456667777888999999988666553221110 0010 01122 2346777888999999999998875444
Q ss_pred ceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe------cCeEEEEECCCCeeeeEEcCCCC------------
Q 015301 124 NVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS------DNFIYVYDLQANKCSLRIPAHKS------------ 185 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~------------ 185 (409)
........ ..+.+.-.--++ .++++.. +|.|.-+|.++|+.+..+..-..
T Consensus 147 ~~~~~~~~-----------~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~ 214 (527)
T TIGR03075 147 KNGDYKAG-----------YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPV 214 (527)
T ss_pred cccccccc-----------ccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccc
Confidence 33211100 001110000134 4555432 68899999999988766532110
Q ss_pred -------------------Ce-EEEEEeCCCCcEEEEeeCC-----C-----------eEEEecccccccCCceeeeeec
Q 015301 186 -------------------DV-NTVCFADETGHLIFSGSDD-----S-----------LCKVWDRRCFISKGRANGVLMG 229 (409)
Q Consensus 186 -------------------~v-~~~~~~~~~~~~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~ 229 (409)
.+ ..+++. +..++++.+..+ + .|.-.|++ +++..-.++.
T Consensus 215 ~~~~~~~tw~~~~~~~gg~~~W~~~s~D-~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~----TG~~~W~~Q~ 289 (527)
T TIGR03075 215 GGEPGAKTWPGDAWKTGGGATWGTGSYD-PETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD----TGKIKWHYQT 289 (527)
T ss_pred ccccccCCCCCCccccCCCCccCceeEc-CCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc----cCCEEEeeeC
Confidence 11 123555 445555555422 2 33444432 4554444433
Q ss_pred cccce---------eEEEEcCCCC---eEEEEeCCCcEEEeeCCCCccc
Q 015301 230 HLEGI---------TFIDSRRDGR---YFISNGKDQTTKLWDIRKMSSN 266 (409)
Q Consensus 230 ~~~~v---------~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~ 266 (409)
....+ .-+.+..+|+ .++.+..+|.+.+.|-++++..
T Consensus 290 ~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 290 TPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 22111 1222334665 6778999999999999887653
No 361
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.98 E-value=0.0077 Score=50.98 Aligned_cols=181 Identities=14% Similarity=0.128 Sum_probs=104.7
Q ss_pred cEEEEEcCCCeeeeeee-ecccccceEEEEEeCCC----CcEEEEEec---------C-CEEEEEEcCCC-cccccccee
Q 015301 63 NIKVYNVDKNWKIQKDI-ETKALRWTITDTSLSPD----QRFLVYASI---------C-AIVNIVDVGSS-ARESLANVT 126 (409)
Q Consensus 63 ~i~vw~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~----~~~l~~~~~---------d-g~i~~w~~~~~-~~~~~~~~~ 126 (409)
.|++.|..+.+.+.... ....+-..+..+.+..+ ..+|++|+. . |.|.++++... .........
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 57888877765443321 22222223334445443 578887752 2 89999999884 100011100
Q ss_pred ceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCe-eeeEEc-CCCCCeEEEEEeCCCCcEEEEee
Q 015301 127 EIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK-CSLRIP-AHKSDVNTVCFADETGHLIFSGS 204 (409)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~ 204 (409)
.. . ...++|++++-- ++. |+++ ..+.|.+|++...+ ....-. .....+.++... ++++++|.
T Consensus 83 --~~-~-------~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD 146 (321)
T PF03178_consen 83 --HS-T-------EVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGD 146 (321)
T ss_dssp --EE-E-------EESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEE
T ss_pred --EE-E-------eecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEE
Confidence 00 0 113368888766 444 4444 35889999998877 443322 133467777765 56899999
Q ss_pred CCCeEEEecccccccCCceeeeeec--cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 205 DDSLCKVWDRRCFISKGRANGVLMG--HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 205 ~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
....+.++..+. ....+..+.. ....++++.+-++++.++.+..+|.+.++....
T Consensus 147 ~~~sv~~~~~~~---~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 147 AMKSVSLLRYDE---ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp SSSSEEEEEEET---TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred cccCEEEEEEEc---cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 888888886541 2222222222 244578888876667899999999999998764
No 362
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.95 E-value=0.0013 Score=59.62 Aligned_cols=192 Identities=14% Similarity=0.066 Sum_probs=98.1
Q ss_pred ceeeEEecCceeEeecc---------ceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCC-CcEEEEEcCCCe
Q 015301 4 GREVNYSGRGRFSAADS---------CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQE-SNIKVYNVDKNW 73 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~---------~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d-~~i~vw~~~~~~ 73 (409)
....++||||+.++... ...++..-.......+.. ....+.-.|+|||+.+++.... ..+++.+-....
T Consensus 352 vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~g 430 (591)
T PRK13616 352 ITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATG 430 (591)
T ss_pred cccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCCCceECCCCCceEEEecCcceEEEeccCCCc
Confidence 45678999998765433 112222211222233322 2248899999999988887543 222232221111
Q ss_pred eeeee-eec---c-cccceEEEEEeCCCCcEEEEEecCCEEEE---EEcCCCccccccceeceeeeeeeecCCCCcceee
Q 015301 74 KIQKD-IET---K-ALRWTITDTSLSPDQRFLVYASICAIVNI---VDVGSSARESLANVTEIHKGLDFSADGDEDEFGI 145 (409)
Q Consensus 74 ~~~~~-~~~---~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~~---w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 145 (409)
.+... ... . .....|..+.|||||..++... ++.|.+ -....+. .......... . .....+
T Consensus 431 ql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~------~---~l~~~~ 499 (591)
T PRK13616 431 QLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVG------P---GLGDTA 499 (591)
T ss_pred eEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEee------c---ccCCcc
Confidence 11100 000 0 1234799999999999998776 577777 3333333 1111111000 0 111135
Q ss_pred EEEEEcCCCCeEEEEEecCeEEEEECCC-CeeeeEEcC--CCCCeEEEEEeCCCCcEEEEeeCCCeEEE
Q 015301 146 FSVKFSTDGQELVAAGSDNFIYVYDLQA-NKCSLRIPA--HKSDVNTVCFADETGHLIFSGSDDSLCKV 211 (409)
Q Consensus 146 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 211 (409)
.++.|..++.++ ++..++.-.+|.+.- |.....+.. ...++..++-. + ..++....+|.+.+
T Consensus 500 ~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~-~--~~iyv~~~~g~~~l 564 (591)
T PRK13616 500 VSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAAS-P--STVYVTDARAVLQL 564 (591)
T ss_pred ccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecC-C--ceEEEEcCCceEEe
Confidence 789999999854 555554444554321 222222232 25667777766 3 34556666665444
No 363
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.95 E-value=2e-05 Score=59.46 Aligned_cols=68 Identities=13% Similarity=0.181 Sum_probs=56.3
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceEEEeccCC-cceeeeEEecCcCeEEee--cCCCeEEEEecCCCcccC
Q 015301 324 AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHN-APVRDCCWHPIYPMLISS--SWDCNIVRWEIPGIGEAP 391 (409)
Q Consensus 324 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~--~~dg~i~iw~~~~~~~~~ 391 (409)
++.+..+++.||.|+.|++.-.+.+...-.|. .++..+..+..++.|+.+ |.|..++.|++......+
T Consensus 113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~~ 183 (238)
T KOG2444|consen 113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDES 183 (238)
T ss_pred ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhccC
Confidence 45688999999999999999999888887787 677777777778888888 889999999998765543
No 364
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.94 E-value=0.0077 Score=49.81 Aligned_cols=204 Identities=17% Similarity=0.126 Sum_probs=112.1
Q ss_pred EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee--cccccceEEEEEeCCCCcEE
Q 015301 23 VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE--TKALRWTITDTSLSPDQRFL 100 (409)
Q Consensus 23 ~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l 100 (409)
.+.++-+.......-.+.+.+.++..-.++..|+++. .| +.+++.+.+........ ........+.....|+|.+.
T Consensus 48 ~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~-~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~w 125 (307)
T COG3386 48 RIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE-HG-VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIW 125 (307)
T ss_pred eEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc-cc-cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEE
Confidence 4455545433333333444455554444444555553 33 77777765544222111 11122356778888998877
Q ss_pred EEEec-----------CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEE
Q 015301 101 VYASI-----------CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYV 168 (409)
Q Consensus 101 ~~~~~-----------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v 168 (409)
+.... -|.++.++. .+....... .+-...+.++||||++.|+.+.. .+.|.-
T Consensus 126 fgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~---------------~~~~~~NGla~SpDg~tly~aDT~~~~i~r 189 (307)
T COG3386 126 FGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD---------------DDLTIPNGLAFSPDGKTLYVADTPANRIHR 189 (307)
T ss_pred EeCCCccccCccccCCcceEEEEcC-CCCEEEeec---------------CcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence 75433 122333332 121111111 11123678999999998888766 377888
Q ss_pred EECCC--Cee-----eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCC-eEEEecccccccCCceeeeeeccccceeEEEEc
Q 015301 169 YDLQA--NKC-----SLRIPAHKSDVNTVCFADETGHLIFSGSDDS-LCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240 (409)
Q Consensus 169 ~d~~~--~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (409)
+++.. +.. ........+..-.++.. .++++.+++..+| .|..|+. .++.+..+.-+...+++++|-
T Consensus 190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD-adG~lw~~a~~~g~~v~~~~p-----dG~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD-ADGNLWVAAVWGGGRVVRFNP-----DGKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred EecCcccCccCCcceEEEccCCCCCCCceEEe-CCCCEEEecccCCceEEEECC-----CCcEEEEEECCCCCCccceEe
Confidence 87752 111 11122344556667776 7788776555554 8999984 477777777666778888884
Q ss_pred -CCCCeEEEEe
Q 015301 241 -RDGRYFISNG 250 (409)
Q Consensus 241 -~~~~~l~~~~ 250 (409)
|+.+.|...+
T Consensus 264 G~~~~~L~iTs 274 (307)
T COG3386 264 GPDLNTLYITS 274 (307)
T ss_pred CCCcCEEEEEe
Confidence 3445444433
No 365
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.94 E-value=0.01 Score=51.04 Aligned_cols=96 Identities=21% Similarity=0.178 Sum_probs=59.3
Q ss_pred EEEeCCCCcEEEEEecCCEEEE---EEcCCCc-cccccceeceeeeeeeecCCCC-cceeeEEEEEcC-----------C
Q 015301 90 DTSLSPDQRFLVYASICAIVNI---VDVGSSA-RESLANVTEIHKGLDFSADGDE-DEFGIFSVKFST-----------D 153 (409)
Q Consensus 90 ~~~~s~~~~~l~~~~~dg~i~~---w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-----------~ 153 (409)
.++.+|++..||.+..+..+.+ |+..... ....... .+...... ....|+++.+-| |
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~-------~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~d 78 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSI-------SWSGPLDDEPGECITSILCLPLSSQKRSTGGPD 78 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEE-------EeeeeccCCCCCEEEEEEEEEeecccccCCCCC
Confidence 4678899999999987776555 5432211 1111110 01111111 113466665543 4
Q ss_pred CCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEe
Q 015301 154 GQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 193 (409)
Q Consensus 154 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~ 193 (409)
...+++|..+|.|++|.. +|..+..-..|..+|..+.+.
T Consensus 79 w~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 79 WTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred cEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 578999999999999996 677766666689999999886
No 366
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.011 Score=51.09 Aligned_cols=201 Identities=13% Similarity=0.091 Sum_probs=129.1
Q ss_pred eEEEEEcCCCCeEEEE-EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeC---CCeEEEecccccccC
Q 015301 145 IFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD---DSLCKVWDRRCFISK 220 (409)
Q Consensus 145 v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~ 220 (409)
...++.++.+..+.+. ..+..|.+.|..+.+......... ....++++ ++++.++++.. ++.+.+.|. ..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~-~~~~~vYV~n~~~~~~~vsvid~----~t 149 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVD-PDGKYVYVANAGNGNNTVSVIDA----AT 149 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEEC-CCCCEEEEEecccCCceEEEEeC----CC
Confidence 4567888888755544 446899999988877776664332 56788998 66666655544 688888884 35
Q ss_pred CceeeeeeccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccc
Q 015301 221 GRANGVLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQS 299 (409)
Q Consensus 221 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (409)
.........-..+ ..++++|+|..++... .++.|.+.|........ ... ...
T Consensus 150 ~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~-------------------------~~~ 202 (381)
T COG3391 150 NKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSV-------------------------GSL 202 (381)
T ss_pred CeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccc-------------------------ccc
Confidence 5555554333334 8899999999666555 68899999976532110 000 000
Q ss_pred eeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC---CeEEEEEccCCceEEEeccCCc-ceeeeEEecCcCeEEeec-
Q 015301 300 LATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD---NSVYIYDLVSGAQVAKLDFHNA-PVRDCCWHPIYPMLISSS- 374 (409)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~- 374 (409)
+... .......++|+|+.+.+.... +.+...|..++.....-..-.. ....+..+|+|+.+....
T Consensus 203 ~~~~----------~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~ 272 (381)
T COG3391 203 VGVG----------TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS 272 (381)
T ss_pred cccC----------CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec
Confidence 0111 111234678889876665544 5899999988877665221222 456788999999777763
Q ss_pred CCCeEEEEecCCCc
Q 015301 375 WDCNIVRWEIPGIG 388 (409)
Q Consensus 375 ~dg~i~iw~~~~~~ 388 (409)
..+.+.+-|.....
T Consensus 273 ~~~~V~vid~~~~~ 286 (381)
T COG3391 273 QGGTVSVIDGATDR 286 (381)
T ss_pred CCCeEEEEeCCCCc
Confidence 44788888776643
No 367
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.92 E-value=2.2e-05 Score=42.21 Aligned_cols=35 Identities=29% Similarity=0.557 Sum_probs=31.6
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYN 68 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~ 68 (409)
..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 35568899999999999999999999999999996
No 368
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.90 E-value=0.0095 Score=49.29 Aligned_cols=222 Identities=11% Similarity=0.106 Sum_probs=122.8
Q ss_pred EEeCCCCcEEEEE-ecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEE
Q 015301 91 TSLSPDQRFLVYA-SICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVY 169 (409)
Q Consensus 91 ~~~s~~~~~l~~~-~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~ 169 (409)
..|.++...|+.+ -..+.|.-|+..+++........ .+.++..-..+..|+++. ..+.++
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~-----------------~~~~~~~~d~~g~Lv~~~--~g~~~~ 90 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPG-----------------GFSSGALIDAGGRLIACE--HGVRLL 90 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCC-----------------CcccceeecCCCeEEEEc--cccEEE
Confidence 3577777755544 46678888888766433222211 233333333444454442 346777
Q ss_pred ECCCCeeeeEEc----C-CCCCeEEEEEeCCCCcEEEEeeC-----------CCeEEEecccccccCCceeeeeeccccc
Q 015301 170 DLQANKCSLRIP----A-HKSDVNTVCFADETGHLIFSGSD-----------DSLCKVWDRRCFISKGRANGVLMGHLEG 233 (409)
Q Consensus 170 d~~~~~~~~~~~----~-~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 233 (409)
+.+++..+..+. + -....+.+... +++.+.++... -|.++.+| ..+........+-..
T Consensus 91 ~~~~~~~~t~~~~~~~~~~~~r~ND~~v~-pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~-----p~g~~~~l~~~~~~~ 164 (307)
T COG3386 91 DPDTGGKITLLAEPEDGLPLNRPNDGVVD-PDGRIWFGDMGYFDLGKSEERPTGSLYRVD-----PDGGVVRLLDDDLTI 164 (307)
T ss_pred eccCCceeEEeccccCCCCcCCCCceeEc-CCCCEEEeCCCccccCccccCCcceEEEEc-----CCCCEEEeecCcEEe
Confidence 776665533321 1 12345667777 66766665433 13333333 134555555555666
Q ss_pred eeEEEEcCCCCeEEEEeC-CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccc-eeeeecccceee
Q 015301 234 ITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQS-LATYKGHSVLRT 311 (409)
Q Consensus 234 v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 311 (409)
-+.++||||++.|+.+.. .+.|.-|++........ ++. ...+.... ..
T Consensus 165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~----------------------------~~~~~~~~~~~~--G~ 214 (307)
T COG3386 165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIG----------------------------GRRGFVDFDEEP--GL 214 (307)
T ss_pred cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccC----------------------------CcceEEEccCCC--CC
Confidence 788999999988777765 47788887753100000 000 00111000 00
Q ss_pred eeEEEEeeeecCCCCEEEEEeCCC-eEEEEEccCCceEEEeccCCcceeeeEEe-cCcCeEEe
Q 015301 312 LIRCYFSPEYSTAQKYIYTGSSDN-SVYIYDLVSGAQVAKLDFHNAPVRDCCWH-PIYPMLIS 372 (409)
Q Consensus 312 ~~~~~~~~~~s~~~~~l~~~~~dg-~v~i~d~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s 372 (409)
.-..+...+|.+-+++..+| .|.+|+.. ++.+..+..+...+++++|- |+.+.|+.
T Consensus 215 ----PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 215 ----PDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred ----CCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence 01123445677775554454 89999987 99999998777888999995 44454443
No 369
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.89 E-value=0.0026 Score=42.66 Aligned_cols=100 Identities=20% Similarity=0.233 Sum_probs=62.1
Q ss_pred eEEEEECC---CC-CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc
Q 015301 43 VYTSQFSN---DG-SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 43 v~~~~~s~---~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~ 118 (409)
|+++++.. || +.|++|+.|..|++|+-+. .+....+ ...|+++.-... ..++.+-.+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~e----~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEITE----TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEEec----ccceEEEEEcCC-CEEEEEecCCEEEEEeCccee
Confidence 56666644 33 5799999999999998653 3333222 225888877765 568889999999888763322
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcC---CC-CeEEEEEecCeEE
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFST---DG-QELVAAGSDNFIY 167 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~d~~i~ 167 (409)
.. ... ...+.++.+.. +| ..|++|-.+|.|-
T Consensus 75 WR----iKS--------------K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WR----IKS--------------KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ee----ecc--------------CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 11 111 01244454433 22 3688888888774
No 370
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=9.1e-05 Score=64.23 Aligned_cols=71 Identities=18% Similarity=0.227 Sum_probs=63.8
Q ss_pred eeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCccee-eeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 319 PEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVR-DCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 319 ~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
+.|+|.-.++|.+..+|.|.+..+. .+.+.++..|...++ +++|.|||+.||.|=.||+|++.|++.+...
T Consensus 26 ~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 26 IEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred EEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 4577778999999999999999987 888999988888888 9999999999999999999999999887654
No 371
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.84 E-value=0.013 Score=49.22 Aligned_cols=226 Identities=12% Similarity=0.088 Sum_probs=104.6
Q ss_pred EeCCCCcEEEEEec---CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEE
Q 015301 92 SLSPDQRFLVYASI---CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYV 168 (409)
Q Consensus 92 ~~s~~~~~l~~~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v 168 (409)
+|.+||+.|+.++. ...+.+.|+.+++..++...... ......++|+.+.++-......|.-
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~---------------~~~g~~~s~~~~~~~Yv~~~~~l~~ 106 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD---------------NTFGGFLSPDDRALYYVKNGRSLRR 106 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B----------------TTT-EE-TTSSEEEEEETTTEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCC---------------CccceEEecCCCeEEEEECCCeEEE
Confidence 57788977776654 44688888888876554432211 1223556788887766655678999
Q ss_pred EECCCCeeeeEEcCCCCCeEEEEEe-CCCCcEEEEeeC---C-------------------CeEEEecccccccCCceee
Q 015301 169 YDLQANKCSLRIPAHKSDVNTVCFA-DETGHLIFSGSD---D-------------------SLCKVWDRRCFISKGRANG 225 (409)
Q Consensus 169 ~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~---d-------------------g~i~iwd~~~~~~~~~~~~ 225 (409)
.|+++.+....+......+....|. ..++..++-.-. | ..|...|+ ..++ ..
T Consensus 107 vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl----~tG~-~~ 181 (386)
T PF14583_consen 107 VDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL----KTGE-RK 181 (386)
T ss_dssp EETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET----TT---EE
T ss_pred EECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC----CCCc-ee
Confidence 9999988766565555555555664 244444433211 1 11222222 1222 23
Q ss_pred eeeccccceeEEEEcCCCCeEEEEeCCC-----cEEEeeCCCCcccccccccccccccccccccccccceeccccCccce
Q 015301 226 VLMGHLEGITFIDSRRDGRYFISNGKDQ-----TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL 300 (409)
Q Consensus 226 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (409)
.+......+..+.|+|....+++-|..| .-+||-++... ...
T Consensus 182 ~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg---------------------------------~~~ 228 (386)
T PF14583_consen 182 VVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG---------------------------------SNV 228 (386)
T ss_dssp EEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------------------------------------
T ss_pred EEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC---------------------------------Ccc
Confidence 3333455677888998655455444332 23667665421 111
Q ss_pred eeeecccceeeeeEEEEeeeecCCCCEEEEEe-----CCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecC
Q 015301 301 ATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS-----SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSW 375 (409)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-----~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 375 (409)
..+..+... ..+..--|+|||..|.--+ .+..|.-+|+.+++....... .....+.-++|+++++-=+.
T Consensus 229 ~~v~~~~~~----e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 229 KKVHRRMEG----ESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp EESS---TT----EEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-
T ss_pred eeeecCCCC----cccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCC
Confidence 222222111 1222335888888776532 245677788888765433222 24456667788887765444
Q ss_pred C
Q 015301 376 D 376 (409)
Q Consensus 376 d 376 (409)
|
T Consensus 303 d 303 (386)
T PF14583_consen 303 D 303 (386)
T ss_dssp -
T ss_pred C
Confidence 3
No 372
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.84 E-value=0.0013 Score=60.73 Aligned_cols=140 Identities=9% Similarity=0.137 Sum_probs=87.7
Q ss_pred CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC-----CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeee
Q 015301 60 QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-----DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDF 134 (409)
Q Consensus 60 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~ 134 (409)
....|+-.|++.|+.+.. ..... ..+|..++-.. .....+.|-.+..+..||.+-........ .. ..+
T Consensus 502 ~~~~ly~mDLe~GKVV~e-W~~~~-~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~--~~---k~Y 574 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEE-WKVHD-DIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS--QS---KQY 574 (794)
T ss_pred CCCceEEEecCCCcEEEE-eecCC-CcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec--cc---ccc
Confidence 456788888888854443 22222 12244443211 12345667778889999987543111100 00 001
Q ss_pred ecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecc
Q 015301 135 SADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDR 214 (409)
Q Consensus 135 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 214 (409)
.......|++-+.+| +||+|+.+|.|++||--..+....+++-..+|.+|..+ .+|+++++.+ +..+.+++.
T Consensus 575 -----~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt-~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 575 -----SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVT-ADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred -----ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEec-CCCcEEEEee-cceEEEEEE
Confidence 112247778777777 69999999999999954333344567778999999999 9999988766 456777775
No 373
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.0099 Score=47.23 Aligned_cols=157 Identities=16% Similarity=0.151 Sum_probs=96.0
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeE
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 166 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 166 (409)
-+..+.++ +++...+..+.-+++.|+.+............. +--.++. -.|++..++..|.-+
T Consensus 88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~-------------gyaygv~--vsGn~aYVadlddgf 150 (370)
T COG5276 88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD-------------GYAYGVY--VSGNYAYVADLDDGF 150 (370)
T ss_pred hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCC-------------ceEEEEE--ecCCEEEEeeccCcE
Confidence 46677776 456666777788999999887654443322210 0123333 368888888866667
Q ss_pred EEEECCCCe---eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC
Q 015301 167 YVYDLQANK---CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG 243 (409)
Q Consensus 167 ~v~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 243 (409)
.+.|+.+.. ...++......-..++.+ |++-+.+..|+-+.+-|+... ....+.........+.++..+++-
T Consensus 151 LivdvsdpssP~lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp--~sPvli~~~n~g~g~~sv~vsdnr 225 (370)
T COG5276 151 LIVDVSDPSSPQLAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNP--HSPVLIGSYNTGPGTYSVSVSDNR 225 (370)
T ss_pred EEEECCCCCCceeeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCC--CCCeEEEEEecCCceEEEEecCCe
Confidence 788886543 333444445555677776 778888889999999998521 111222222223367788777665
Q ss_pred CeEEEEeCCCcEEEeeCCCCcccc
Q 015301 244 RYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 244 ~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
.+++.. +--+.+-|........
T Consensus 226 ~y~vvy--~egvlivd~s~~ssp~ 247 (370)
T COG5276 226 AYLVVY--DEGVLIVDVSGPSSPT 247 (370)
T ss_pred eEEEEc--ccceEEEecCCCCCce
Confidence 555443 2337777776655443
No 374
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00015 Score=63.01 Aligned_cols=92 Identities=17% Similarity=0.214 Sum_probs=74.6
Q ss_pred eeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeE-EEEEeCCCCcEEEEeeCCCeEEEecccccccCCc
Q 015301 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVN-TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR 222 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 222 (409)
.+..+.|+|.-.++|.+..+|.|.+..+. .+.+.+++.|...++ +++|. ++|++|++|-.||+|++.|+. .+.
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~-~DGkllaVg~kdG~I~L~Dve----~~~ 95 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWR-PDGKLLAVGFKDGTIRLHDVE----KGG 95 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeec-CCCCEEEEEecCCeEEEEEcc----CCC
Confidence 48889999999999999999999999998 777888887888888 99999 899999999999999999964 444
Q ss_pred eeee-eeccccceeEEEEcC
Q 015301 223 ANGV-LMGHLEGITFIDSRR 241 (409)
Q Consensus 223 ~~~~-~~~~~~~v~~~~~~~ 241 (409)
.+.. .......|.++.|++
T Consensus 96 ~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ceeccccccccchheeeccc
Confidence 4433 222345667777753
No 375
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.78 E-value=0.013 Score=47.38 Aligned_cols=154 Identities=16% Similarity=0.057 Sum_probs=87.6
Q ss_pred cceeeEEecCceeEeecc----ceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEE-cCCCeeeee
Q 015301 3 VGREVNYSGRGRFSAADS----CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYN-VDKNWKIQK 77 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~----~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~-~~~~~~~~~ 77 (409)
..+..++|+||..++.-. ...+...-.......+. -...+....|++++...+....+...+++. ...+.....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 467789999998655422 22233322223223322 334888999999988777766666667764 333322222
Q ss_pred eeecccccceEEEEEeCCCCcEEEEEe---cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC
Q 015301 78 DIETKALRWTITDTSLSPDQRFLVYAS---ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG 154 (409)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 154 (409)
..........|.++.+||||..+|... .++.|.+--+................ .. ......+..++|.+++
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~---~~---~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRR---VA---PPLLSDVTDVAWSDDS 177 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceE---ec---ccccCcceeeeecCCC
Confidence 222222222799999999999988765 35777776654332220001000000 00 0112368999999999
Q ss_pred CeEEEEEec
Q 015301 155 QELVAAGSD 163 (409)
Q Consensus 155 ~~l~~~~~d 163 (409)
.+++.+...
T Consensus 178 ~L~V~~~~~ 186 (253)
T PF10647_consen 178 TLVVLGRSA 186 (253)
T ss_pred EEEEEeCCC
Confidence 877766553
No 376
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.70 E-value=0.02 Score=47.13 Aligned_cols=278 Identities=10% Similarity=0.097 Sum_probs=123.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEc-CCCeeeeeeeeccc--ccceEEEEEeCCCCcEEEEEecCCEEEEEEcCC
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNV-DKNWKIQKDIETKA--LRWTITDTSLSPDQRFLVYASICAIVNIVDVGS 116 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~-~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~ 116 (409)
..++..|.|..+..-+++|. .+. |+.. +.++.-........ ......++.|..+ ..+++ +..+.| +...+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g~l-l~T~Dg 89 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPGLL-LHTTDG 89 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETTEE-EEESST
T ss_pred CCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCceE-EEecCC
Confidence 45789999996666666664 453 3444 33332222211111 1224677888643 34444 445543 333443
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC-eeeeEEcCCCCCeEEEEEeCC
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTVCFADE 195 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~ 195 (409)
++.-......... ......+....++..++ ++..|.|+.=. ..| .-......-.+.+..+..+ +
T Consensus 90 G~tW~~v~l~~~l------------pgs~~~i~~l~~~~~~l-~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~-~ 154 (302)
T PF14870_consen 90 GKTWERVPLSSKL------------PGSPFGITALGDGSAEL-AGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRS-S 154 (302)
T ss_dssp TSS-EE----TT-------------SS-EEEEEEEETTEEEE-EETT--EEEES-STTSSEEEEE-S----EEEEEE--T
T ss_pred CCCcEEeecCCCC------------CCCeeEEEEcCCCcEEE-EcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEEC-C
Confidence 4322111111000 00122333333443333 34445543322 222 2223334445778888888 8
Q ss_pred CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccc
Q 015301 196 TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 275 (409)
Q Consensus 196 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 275 (409)
++.+++++..-....-||. ....-...-+.....|..+.|.|++.+.+.+ ..|.|+.=+...
T Consensus 155 dG~~vavs~~G~~~~s~~~----G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~------------- 216 (302)
T PF14870_consen 155 DGRYVAVSSRGNFYSSWDP----GQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD------------- 216 (302)
T ss_dssp TS-EEEEETTSSEEEEE-T----T-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT-------------
T ss_pred CCcEEEEECcccEEEEecC----CCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC-------------
Confidence 9998888876666678882 1212222233346789999999998765544 788887766211
Q ss_pred cccccccccccccceeccccCccceeeeecccceeeee-EEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec--
Q 015301 276 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLI-RCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD-- 352 (409)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-- 352 (409)
....+..+....... --+..+++.+++...++|+. |.+ +.....|+.-...+
T Consensus 217 -----------------------~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~ 271 (302)
T PF14870_consen 217 -----------------------DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVG 271 (302)
T ss_dssp -----------------------EEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGG
T ss_pred -----------------------CccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccc
Confidence 011111111101001 12456678888777776654 433 34555666554443
Q ss_pred -cCCcceeeeEEecCcCeEEeecCCCeEEEE
Q 015301 353 -FHNAPVRDCCWHPIYPMLISSSWDCNIVRW 382 (409)
Q Consensus 353 -~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 382 (409)
.-...++.+.|.++.+-++. +.+|.|.-|
T Consensus 272 ~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 272 ENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp TTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred cCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 23456788888766555554 578988766
No 377
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.69 E-value=0.025 Score=47.92 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=40.0
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceEEE----eccCCcceeeeEEecCcCeEEeecCCCeEE
Q 015301 324 AQKYIYTGSSDNSVYIYDLVSGAQVAK----LDFHNAPVRDCCWHPIYPMLISSSWDCNIV 380 (409)
Q Consensus 324 ~~~~l~~~~~dg~v~i~d~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 380 (409)
.|.++++.-..+.|....+..+..+.. +......+.++++.|||.+.++.+.+|.|+
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 466777777678888888875533221 233455899999999999888888888875
No 378
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.65 E-value=0.037 Score=48.89 Aligned_cols=250 Identities=16% Similarity=0.166 Sum_probs=123.2
Q ss_pred eEEEEEeCCCCcEEEEE-ecCC----EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE
Q 015301 87 TITDTSLSPDQRFLVYA-SICA----IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~-~~dg----~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (409)
.+....++|+++++|.+ +..| .++++|+.+++..... +... ....+.|.++++.|+...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~~---------------~~~~~~W~~d~~~~~y~~ 188 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IENP---------------KFSSVSWSDDGKGFFYTR 188 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEEE---------------ESEEEEECTTSSEEEEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-cccc---------------ccceEEEeCCCCEEEEEE
Confidence 45578899999999876 3333 5999999998542211 0100 123399999988877665
Q ss_pred ecC-----------eEEEEECCCCeee--eEEcCCCCC--eEEEEEeCCCCcEEEEeeCC----CeEEEecccccccCCc
Q 015301 162 SDN-----------FIYVYDLQANKCS--LRIPAHKSD--VNTVCFADETGHLIFSGSDD----SLCKVWDRRCFISKGR 222 (409)
Q Consensus 162 ~d~-----------~i~v~d~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~ 222 (409)
.+. .|+.|.+.+.... ..+...... ...+..+ +++++|+..... ..+.+.|+........
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s-~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~ 267 (414)
T PF02897_consen 189 FDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRS-KDGRYLFISSSSGTSESEVYLLDLDDGGSPDA 267 (414)
T ss_dssp CSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE--TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-
T ss_pred eCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEec-CcccEEEEEEEccccCCeEEEEeccccCCCcC
Confidence 432 4788888766432 334333332 5677888 788887754322 3467777541100122
Q ss_pred eeeeeeccccceeEEEEcCCCCeEEEEeC---CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccc
Q 015301 223 ANGVLMGHLEGITFIDSRRDGRYFISNGK---DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQS 299 (409)
Q Consensus 223 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (409)
....+......+....-+..+.+++.... .+.|...++....... .
T Consensus 268 ~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~-------------------------------~ 316 (414)
T PF02897_consen 268 KPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAE-------------------------------W 316 (414)
T ss_dssp SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGG-------------------------------E
T ss_pred CcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEeccccccccc-------------------------------c
Confidence 33333333333333222223333333322 3456666665532100 0
Q ss_pred eeeeecccceeeeeEEEEeeeecCCCC-EEEEEeCCC--eEEEEEccCCceEEEecc-CCcceeeeEEecCcC-eEEe-e
Q 015301 300 LATYKGHSVLRTLIRCYFSPEYSTAQK-YIYTGSSDN--SVYIYDLVSGAQVAKLDF-HNAPVRDCCWHPIYP-MLIS-S 373 (409)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg--~v~i~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~-~l~s-~ 373 (409)
...+..+.....+.. ++..+. +++.-..++ .|+++++..+.....+.. -.+.|..+...++++ +.++ .
T Consensus 317 ~~~l~~~~~~~~l~~------~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~s 390 (414)
T PF02897_consen 317 WTVLIPEDEDVSLED------VSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYS 390 (414)
T ss_dssp EEEEE--SSSEEEEE------EEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEE
T ss_pred eeEEcCCCCceeEEE------EEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEe
Confidence 001111111111111 111233 444444443 688999883444444432 334566666666666 3333 3
Q ss_pred c--CCCeEEEEecCCCccc
Q 015301 374 S--WDCNIVRWEIPGIGEA 390 (409)
Q Consensus 374 ~--~dg~i~iw~~~~~~~~ 390 (409)
| .-++++.||+.+++..
T Consensus 391 s~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 391 SFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp ETTEEEEEEEEETTTTCEE
T ss_pred CCCCCCEEEEEECCCCCEE
Confidence 3 2367888888877654
No 379
>PHA02713 hypothetical protein; Provisional
Probab=97.63 E-value=0.0055 Score=55.83 Aligned_cols=189 Identities=9% Similarity=0.056 Sum_probs=97.7
Q ss_pred CCCEEEEEeCC------CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCC-----EEEEEEcCCCcc
Q 015301 51 DGSFFVAASQE------SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA-----IVNIVDVGSSAR 119 (409)
Q Consensus 51 ~~~~l~t~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~~w~~~~~~~ 119 (409)
++.+.+.||.+ ..+..||..++. ................+. -+++..+.|+.++ .+..||..+.+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~-W~~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKI-HVELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCe-EeeCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 56777777753 347778877662 222111111111122222 2577778887654 478889887654
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec-----------------------CeEEEEECCCCee
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-----------------------NFIYVYDLQANKC 176 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------------------~~i~v~d~~~~~~ 176 (409)
.....+..... ....+.. +++..+.|+.+ ..+..||..+.+.
T Consensus 380 ~~~~~mp~~r~-------------~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W 444 (557)
T PHA02713 380 KMLPDMPIALS-------------SYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW 444 (557)
T ss_pred EECCCCCcccc-------------cccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE
Confidence 43333222111 1111222 67777777654 2477888877654
Q ss_pred eeEEcCCCCCe-EEEEEeCCCCcEEEEeeCCC------eEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEE
Q 015301 177 SLRIPAHKSDV-NTVCFADETGHLIFSGSDDS------LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISN 249 (409)
Q Consensus 177 ~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 249 (409)
...-....... .+++.. ++.+.+.|+.++ .+..||.... .....+..+.........+.+ ++++.++|
T Consensus 445 ~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~-~~W~~~~~m~~~r~~~~~~~~--~~~iyv~G 519 (557)
T PHA02713 445 ETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTY-NGWELITTTESRLSALHTILH--DNTIMMLH 519 (557)
T ss_pred eecCCCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCC-CCeeEccccCcccccceeEEE--CCEEEEEe
Confidence 32221111111 223333 567777777542 4678886510 123333333333232333333 67888899
Q ss_pred eCCC--cEEEeeCCC
Q 015301 250 GKDQ--TTKLWDIRK 262 (409)
Q Consensus 250 ~~dg--~i~iwd~~~ 262 (409)
+.++ .+..||..+
T Consensus 520 g~~~~~~~e~yd~~~ 534 (557)
T PHA02713 520 CYESYMLQDTFNVYT 534 (557)
T ss_pred eecceeehhhcCccc
Confidence 8888 677777766
No 380
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.62 E-value=0.012 Score=46.64 Aligned_cols=190 Identities=15% Similarity=0.147 Sum_probs=105.0
Q ss_pred EECCCCCEEEEEeCC-----CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEE----------
Q 015301 47 QFSNDGSFFVAASQE-----SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI---------- 111 (409)
Q Consensus 47 ~~s~~~~~l~t~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~---------- 111 (409)
.|||||.+|...-.| |.|-|||...+ ....-+...|.-....+.|.+||+.++.+. |-|..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lN 195 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELN 195 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccc
Confidence 599999999766443 78999999854 344445555555778899999999998874 33333
Q ss_pred ----------EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC-----eEEEEECCCCee
Q 015301 112 ----------VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN-----FIYVYDLQANKC 176 (409)
Q Consensus 112 ----------w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~ 176 (409)
.|..+++......+.. ..+...|..++..+||..++.+-..| --.+=....++.
T Consensus 196 ldsMePSlvlld~atG~liekh~Lp~-----------~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~ 264 (366)
T COG3490 196 LDSMEPSLVLLDAATGNLIEKHTLPA-----------SLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEP 264 (366)
T ss_pred hhhcCccEEEEeccccchhhhccCch-----------hhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCc
Confidence 2322222222221110 02233588888888887554433222 111112223333
Q ss_pred eeEEc-------CCCCCeEEEEEeCCCCcEEEEee-CCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEE
Q 015301 177 SLRIP-------AHKSDVNTVCFADETGHLIFSGS-DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFIS 248 (409)
Q Consensus 177 ~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 248 (409)
+.-+. .....|-+++.+ .+..+++..+ ..+...+||.. ++..+....- .....+. +...-+++
T Consensus 265 l~~~~~pee~~~~~anYigsiA~n-~~~glV~lTSP~GN~~vi~da~----tG~vv~~a~l--~daaGva--~~~~gf~v 335 (366)
T COG3490 265 LEFLDLPEEQTAAFANYIGSIAAN-RRDGLVALTSPRGNRAVIWDAA----TGAVVSEAAL--PDAAGVA--AAKGGFAV 335 (366)
T ss_pred CcccCCCHHHHHHHHhhhhheeec-ccCCeEEEecCCCCeEEEEEcC----CCcEEecccc--cccccce--eccCceEE
Confidence 33322 123567788887 4444554444 44557789954 5554433211 1122232 23344777
Q ss_pred EeCCCcEEEeeC
Q 015301 249 NGKDQTTKLWDI 260 (409)
Q Consensus 249 ~~~dg~i~iwd~ 260 (409)
.+.+|.+.++.-
T Consensus 336 ssg~G~~~~~s~ 347 (366)
T COG3490 336 SSGQGRIIFYSR 347 (366)
T ss_pred ecCCceEEeccc
Confidence 778888888843
No 381
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.59 E-value=0.0089 Score=45.79 Aligned_cols=154 Identities=13% Similarity=0.220 Sum_probs=93.5
Q ss_pred CCCeEEEEECCCCCEEEEEeC---------CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEE-EecCCEE
Q 015301 40 NSRVYTSQFSNDGSFFVAASQ---------ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVY-ASICAIV 109 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~---------d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i 109 (409)
..+.+.-..+|+|++++-.=. .|.++.|-.... +......-. --+.++|+.+.+.+.. -+.+-.|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~--v~~i~~~v~---IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ--VELIWNCVG---ISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC--ceeeehhcc---CCccccccccCcEEEEEccCceEE
Confidence 344555567899998542211 255666655432 111111111 3466889887766554 4566678
Q ss_pred EEEE--cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCe
Q 015301 110 NIVD--VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV 187 (409)
Q Consensus 110 ~~w~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v 187 (409)
.-|| ..++.......+........+. ....-.+++..+|++.++.-..++|...|..+|+.+.++......|
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e------~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qi 256 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFE------SLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQI 256 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcC------CCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCce
Confidence 7787 5565543333222222111111 1112335556688888888888999999999999999998889999
Q ss_pred EEEEEeCCCCcEEEEee
Q 015301 188 NTVCFADETGHLIFSGS 204 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~ 204 (409)
++++|--++-..+++..
T Consensus 257 tsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 257 TSCCFGGKNLDILYVTT 273 (310)
T ss_pred EEEEecCCCccEEEEEe
Confidence 99999855555555543
No 382
>PHA02713 hypothetical protein; Provisional
Probab=97.58 E-value=0.021 Score=52.22 Aligned_cols=93 Identities=13% Similarity=0.200 Sum_probs=48.6
Q ss_pred CCcEEEEEecC------CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC-----
Q 015301 96 DQRFLVYASIC------AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN----- 164 (409)
Q Consensus 96 ~~~~l~~~~~d------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----- 164 (409)
++...++|+.+ ..+..||..+........+..... ....+. -+|+..+.|+.++
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~-------------~~~~~~--~~g~IYviGG~~~~~~~~ 367 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRC-------------RFSLAV--IDDTIYAIGGQNGTNVER 367 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhh-------------ceeEEE--ECCEEEEECCcCCCCCCc
Confidence 56677777753 347778877765433322221110 111222 2677777887653
Q ss_pred eEEEEECCCCeeee--EEcCCCCCeEEEEEeCCCCcEEEEeeCC
Q 015301 165 FIYVYDLQANKCSL--RIPAHKSDVNTVCFADETGHLIFSGSDD 206 (409)
Q Consensus 165 ~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d 206 (409)
.+..||..+.+... .++...... +++. -++.+.+.|+.+
T Consensus 368 sve~Ydp~~~~W~~~~~mp~~r~~~-~~~~--~~g~IYviGG~~ 408 (557)
T PHA02713 368 TIECYTMGDDKWKMLPDMPIALSSY-GMCV--LDQYIYIIGGRT 408 (557)
T ss_pred eEEEEECCCCeEEECCCCCcccccc-cEEE--ECCEEEEEeCCC
Confidence 48889988765433 122111111 2222 257777777765
No 383
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.54 E-value=0.0027 Score=58.78 Aligned_cols=150 Identities=12% Similarity=0.103 Sum_probs=91.2
Q ss_pred CCCcEEEEe-eCCCeEEEecccccccCCceeeeeeccccc-eeEEEEcC-----CCCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 195 ETGHLIFSG-SDDSLCKVWDRRCFISKGRANGVLMGHLEG-ITFIDSRR-----DGRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 195 ~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
.+.++|+.- .....|+-.|+ ..++.+..+..|... |..++-.. +...-+.|-.+..+..||.|-.....
T Consensus 491 ~d~~mil~~~~~~~~ly~mDL----e~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~ 566 (794)
T PF08553_consen 491 QDRNMILLDPNNPNKLYKMDL----ERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL 566 (794)
T ss_pred cccceEeecCCCCCceEEEec----CCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce
Confidence 344454443 34567777885 488888888877654 55543221 12345667778889999998522100
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~ 347 (409)
. ......+.... . ..+.+-+ ...+||+|+.+|.|++||--..+.
T Consensus 567 v----------------------------~~~~k~Y~~~~---~----Fs~~aTt-~~G~iavgs~~G~IRLyd~~g~~A 610 (794)
T PF08553_consen 567 V----------------------------DSQSKQYSSKN---N----FSCFATT-EDGYIAVGSNKGDIRLYDRLGKRA 610 (794)
T ss_pred e----------------------------eccccccccCC---C----ceEEEec-CCceEEEEeCCCcEEeecccchhh
Confidence 0 00001111111 0 1111222 356899999999999999433233
Q ss_pred EEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 348 VAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 348 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
-..+.+-..+|.+|..+.||++|++.+ +..|.+++..
T Consensus 611 KT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 611 KTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred hhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 344567788999999999999877665 5678888863
No 384
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.49 E-value=0.075 Score=48.19 Aligned_cols=159 Identities=9% Similarity=0.060 Sum_probs=85.9
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC---CCcEEEEEe------cCCEEEEEEcCCCcccccc
Q 015301 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP---DQRFLVYAS------ICAIVNIVDVGSSARESLA 123 (409)
Q Consensus 53 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~------~dg~i~~w~~~~~~~~~~~ 123 (409)
..++.++.|+.+.-.|.++++.+...... .+.. -..+.-+| ++ .++++. .+|.|..+|.++++..-..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~-~~~~-~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNG-DYKA-GYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccc-cccc-cccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 45677778899999999998766543221 1110 00111122 34 444443 2688999999988765433
Q ss_pred ceeceeee------------e---eeecCCCCc-ceeeE-EEEEcCCCCeEEEEEec----------------CeEEEEE
Q 015301 124 NVTEIHKG------------L---DFSADGDED-EFGIF-SVKFSTDGQELVAAGSD----------------NFIYVYD 170 (409)
Q Consensus 124 ~~~~~~~~------------~---~~~~~~~~~-~~~v~-~~~~~~~~~~l~~~~~d----------------~~i~v~d 170 (409)
........ . .+....-.+ ...+. .+++.|+..+++.+..+ ..|.-.|
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 32211100 0 000000000 11122 33566666666655421 1677889
Q ss_pred CCCCeeeeEEcCCCCCe---------EEEEEeCCCCc---EEEEeeCCCeEEEeccc
Q 015301 171 LQANKCSLRIPAHKSDV---------NTVCFADETGH---LIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~---~l~~~~~dg~i~iwd~~ 215 (409)
+++|+....++.....+ .-+... .++. .++.+..+|.+.+.|.+
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~-~~G~~~~~v~~~~K~G~~~vlDr~ 333 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLK-KDGKPRKLLAHADRNGFFYVLDRT 333 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEec-cCCcEEEEEEEeCCCceEEEEECC
Confidence 99999887775422222 222221 3554 78889999999999965
No 385
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.48 E-value=0.039 Score=50.39 Aligned_cols=191 Identities=15% Similarity=0.177 Sum_probs=102.8
Q ss_pred CCCCCEEEEEeCC------CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC------CEEEEEEcCC
Q 015301 49 SNDGSFFVAASQE------SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC------AIVNIVDVGS 116 (409)
Q Consensus 49 s~~~~~l~t~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~~w~~~~ 116 (409)
+..+.+++.||.+ ..+..||..++. ......... ...-.+++.. ++...++|+.| ..+..||..+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~-w~~~a~m~~-~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNE-WSSLAPMPS-PRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCc-EeecCCCCc-ccccccEEEE-CCEEEEEccccCCCcccceEEEecCCC
Confidence 3446677788776 357888887762 222111211 1123334443 45778888888 3577888887
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC-----eEEEEECCCCeeeeEEcCCCCCeEEEE
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN-----FIYVYDLQANKCSLRIPAHKSDVNTVC 191 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~~~~~~~~~v~~~~ 191 (409)
++......+...... .....+ +|...++|+.|| ++..||..+.+....-+... ......
T Consensus 359 ~~W~~~a~M~~~R~~-------------~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~g 422 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSD-------------FGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHG 422 (571)
T ss_pred CceeccCCccCcccc-------------ceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeE
Confidence 775444333322111 111112 788888898876 47778877665433222111 222222
Q ss_pred EeCCCCcEEEEeeCCC------eEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCc-----EEEeeC
Q 015301 192 FADETGHLIFSGSDDS------LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT-----TKLWDI 260 (409)
Q Consensus 192 ~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~ 260 (409)
...-++.+.++|+.++ ++..||.. .........+........ ++. -++.+.+.|+.|+. +..||.
T Consensus 423 v~~~~g~iYi~GG~~~~~~~l~sve~YDP~--t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 423 VAVLGGKLYIIGGGDGSSNCLNSVECYDPE--TNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDP 498 (571)
T ss_pred EEEECCEEEEEcCcCCCccccceEEEEcCC--CCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcC
Confidence 2224688888888654 46778865 222333333322222222 222 25777888887762 566766
Q ss_pred CC
Q 015301 261 RK 262 (409)
Q Consensus 261 ~~ 262 (409)
.+
T Consensus 499 ~~ 500 (571)
T KOG4441|consen 499 ET 500 (571)
T ss_pred CC
Confidence 55
No 386
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.47 E-value=0.055 Score=46.19 Aligned_cols=203 Identities=12% Similarity=0.024 Sum_probs=91.6
Q ss_pred CCCEEEEEe-CCCcEEEEEcCCCe---eeeeeeecc-----cccceEEEEEeCCCCcEEEEEe------cCCEEEEEEcC
Q 015301 51 DGSFFVAAS-QESNIKVYNVDKNW---KIQKDIETK-----ALRWTITDTSLSPDQRFLVYAS------ICAIVNIVDVG 115 (409)
Q Consensus 51 ~~~~l~t~~-~d~~i~vw~~~~~~---~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~------~dg~i~~w~~~ 115 (409)
+.++|+..+ ..+.|+|.|+.+.- .+.+..+.. .--.....+..-|+|+.++++- ..|.+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 66889999998541 222322220 0112344455568898888762 23457777776
Q ss_pred CCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--------------------cCeEEEEECCCCe
Q 015301 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--------------------DNFIYVYDLQANK 175 (409)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------------------d~~i~v~d~~~~~ 175 (409)
+.+.......... ...--+.+.|.|..+.+++... ...+.+||+.+.+
T Consensus 166 tf~v~g~We~~~~------------~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~ 233 (461)
T PF05694_consen 166 TFEVKGRWEKDRG------------PQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK 233 (461)
T ss_dssp T--EEEE--SB-T------------T------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE
T ss_pred cccccceeccCCC------------CCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc
Confidence 6544322221111 1112456777887777776532 3579999999999
Q ss_pred eeeEEcCCC--CCeEEEEEeC-CCCcE-EEEeeCCCeEEEecccccccCC--ceeeee-----------------ecccc
Q 015301 176 CSLRIPAHK--SDVNTVCFAD-ETGHL-IFSGSDDSLCKVWDRRCFISKG--RANGVL-----------------MGHLE 232 (409)
Q Consensus 176 ~~~~~~~~~--~~v~~~~~~~-~~~~~-l~~~~~dg~i~iwd~~~~~~~~--~~~~~~-----------------~~~~~ 232 (409)
.++++.... ..+..+.|.. |+... ++.+.-..+|..|--.. .... +.+..+ ..-..
T Consensus 234 ~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~-~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~ 312 (461)
T PF05694_consen 234 LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDD-DGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPP 312 (461)
T ss_dssp EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-E-TTEEEEEEEEEE--EE--SS---GGGGGG-EE--
T ss_pred EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcC-CCCeeeeEEEECCCcccCcccccccccccccCCC
Confidence 999886433 2355677752 23333 33333444555443210 0001 111111 11134
Q ss_pred ceeEEEEcCCCCeEEEEeC-CCcEEEeeCCCCccc
Q 015301 233 GITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSN 266 (409)
Q Consensus 233 ~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~ 266 (409)
-|+.|..|.|.++|..++. .|.|+.||+......
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence 5788999999999887765 899999999885443
No 387
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.43 E-value=0.00076 Score=37.58 Aligned_cols=31 Identities=16% Similarity=0.342 Sum_probs=28.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVD 70 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~ 70 (409)
...|.+++|+|..+++|.+..+|.|.+|.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4579999999999999999999999999983
No 388
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.43 E-value=0.00031 Score=53.18 Aligned_cols=105 Identities=12% Similarity=0.087 Sum_probs=67.3
Q ss_pred CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCee
Q 015301 97 QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC 176 (409)
Q Consensus 97 ~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 176 (409)
+..+++|+.+|.|.+|+........-....... .....+.-..++.+..+++.+|.|+.|++.-.+.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e-------------~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~ 136 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE-------------SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV 136 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccc-------------cceeccccccccceeEEeccCCceeeeccccCce
Confidence 567889999999999988732221111111000 0122222233556788899999999999988887
Q ss_pred eeEEcCCC-CCeEEEEEeCCCCcEEEEe--eCCCeEEEeccc
Q 015301 177 SLRIPAHK-SDVNTVCFADETGHLIFSG--SDDSLCKVWDRR 215 (409)
Q Consensus 177 ~~~~~~~~-~~v~~~~~~~~~~~~l~~~--~~dg~i~iwd~~ 215 (409)
+...-.|+ .++.....+ ..+.+++.. +.|..++.|++.
T Consensus 137 ~g~~g~h~~~~~e~~ivv-~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 137 LGYVGQHNFESGEELIVV-GSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeeeccccCCCcceeEEe-cCCceEEeeccccchhhhhcchh
Confidence 77776677 555555555 556666666 677777777754
No 389
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.34 E-value=0.086 Score=45.55 Aligned_cols=33 Identities=15% Similarity=-0.024 Sum_probs=27.8
Q ss_pred ccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 231 LEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 231 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
...+.+++.+|++++.++...-|+|.++|+.+.
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~ 339 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARG 339 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 345788999999998888877899999999883
No 390
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.0056 Score=52.62 Aligned_cols=150 Identities=15% Similarity=0.135 Sum_probs=94.1
Q ss_pred CCCcEEE-EeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCC-------eEEEEeCCCcEEEeeCCCCccc
Q 015301 195 ETGHLIF-SGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR-------YFISNGKDQTTKLWDIRKMSSN 266 (409)
Q Consensus 195 ~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~iwd~~~~~~~ 266 (409)
.+.++|+ ++.....++-.|+ +.++.+..+.-+.. |+-+.+.|+.+ .-+.|-.|..|.-||.|-...
T Consensus 343 ~dsnlil~~~~~~~~l~klDI----E~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~- 416 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDI----ERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK- 416 (644)
T ss_pred cccceEeeCCCCcCcceeeec----ccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc-
Confidence 3444444 4455556777774 58888888887766 77777777643 124466788899999874211
Q ss_pred ccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 267 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
..+....+|.-.... -|+..-.....++++|+.+|.|++||--..+
T Consensus 417 -------------------------------~kl~~~q~kqy~~k~---nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~ 462 (644)
T KOG2395|consen 417 -------------------------------NKLAVVQSKQYSTKN---NFSCFATTESGYIVVGSLKGDIRLYDRIGRR 462 (644)
T ss_pred -------------------------------ceeeeeecccccccc---ccceeeecCCceEEEeecCCcEEeehhhhhh
Confidence 012222222211111 0111111235689999999999999973333
Q ss_pred eEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 347 QVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 347 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
.-..+.+...+|..+..+.+|++|+..+ +..+.+-++.
T Consensus 463 AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 463 AKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred hhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 3455678889999999999999777654 5677777764
No 391
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.22 E-value=0.12 Score=44.77 Aligned_cols=158 Identities=8% Similarity=0.073 Sum_probs=89.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCe-eeeeeeecccccceEEEEEeCC-----CCcEEEEEecCCEEEEEEcCCCccccccc
Q 015301 51 DGSFFVAASQESNIKVYNVDKNW-KIQKDIETKALRWTITDTSLSP-----DQRFLVYASICAIVNIVDVGSSARESLAN 124 (409)
Q Consensus 51 ~~~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 124 (409)
+...+++||..|.++||+..... .....+-......+|..+..-. +...||+ =.-..+.+|.+.........
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~- 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH- 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc-
Confidence 34689999999999999986542 1111111222334787776532 2344554 44677888887322111000
Q ss_pred eeceeeeeeeecCCCCcceeeEEEEEcC----C-CCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcE
Q 015301 125 VTEIHKGLDFSADGDEDEFGIFSVKFST----D-GQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHL 199 (409)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 199 (409)
-....-...+...... ....+++-| . ..++.+-+.||.+.+++-+.......++. .--...++|. +..+.
T Consensus 114 g~~~~L~~~yeh~l~~---~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~-~~tDs 188 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQR---TAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYC-PRTDS 188 (418)
T ss_pred CcEEEEEEEEEEeccc---ceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEe-ecCCE
Confidence 0000000001111111 233333333 2 35778888999999999776554444443 3334567888 77788
Q ss_pred EEEeeCCCeEEEeccc
Q 015301 200 IFSGSDDSLCKVWDRR 215 (409)
Q Consensus 200 l~~~~~dg~i~iwd~~ 215 (409)
|++++.+..+.-|...
T Consensus 189 fvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 189 FVTASSSWTLECYKYQ 204 (418)
T ss_pred EEEecCceeEEEecHH
Confidence 8898888899988864
No 392
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.21 E-value=0.05 Score=49.75 Aligned_cols=194 Identities=15% Similarity=0.195 Sum_probs=105.7
Q ss_pred eEEEEECCCCCEEEEEeCC------CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCC-----EEEE
Q 015301 43 VYTSQFSNDGSFFVAASQE------SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA-----IVNI 111 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~~ 111 (409)
-.+++.. +|.+.++||.| .++..||...+. .................. -+|...|+|+.|| ++..
T Consensus 325 ~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~ 400 (571)
T KOG4441|consen 325 RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ-WTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVEC 400 (571)
T ss_pred cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc-eeccCCccCccccceeEE--ECCEEEEEeccccccccccEEE
Confidence 3344444 45788889888 357778877663 222222222111111122 2578888898886 4778
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec------CeEEEEECCCCeeeeEE--cCC
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD------NFIYVYDLQANKCSLRI--PAH 183 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~--~~~ 183 (409)
||..+.+............ ....+.+ +|...++|+.+ .++..||..+++....- ..-
T Consensus 401 YDp~~~~W~~va~m~~~r~-------------~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~ 465 (571)
T KOG4441|consen 401 YDPVTNKWTPVAPMLTRRS-------------GHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR 465 (571)
T ss_pred ecCCCCcccccCCCCccee-------------eeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccc
Confidence 8888777655444333111 1222222 77777888754 35778888877654322 211
Q ss_pred CCCeEEEEEeCCCCcEEEEeeCCCe-----EEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC-----
Q 015301 184 KSDVNTVCFADETGHLIFSGSDDSL-----CKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ----- 253 (409)
Q Consensus 184 ~~~v~~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----- 253 (409)
... ..++.. ++.+.+.|+.|+. |..||.+ ......+..+......+....+ ++...++|+.||
T Consensus 466 R~~-~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~--~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~ 538 (571)
T KOG4441|consen 466 RSG-FGVAVL--NGKIYVVGGFDGTSALSSVERYDPE--TNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLN 538 (571)
T ss_pred ccc-ceEEEE--CCEEEEECCccCCCccceEEEEcCC--CCceeEcccCccccccccEEEE--CCEEEEEecccCccccc
Confidence 111 224443 6788888888773 6778865 2233333223222222222222 467778888776
Q ss_pred cEEEeeCCC
Q 015301 254 TTKLWDIRK 262 (409)
Q Consensus 254 ~i~iwd~~~ 262 (409)
+|..||..+
T Consensus 539 ~ve~ydp~~ 547 (571)
T KOG4441|consen 539 TVECYDPET 547 (571)
T ss_pred eeEEcCCCC
Confidence 466666554
No 393
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.21 E-value=0.064 Score=41.35 Aligned_cols=44 Identities=14% Similarity=0.311 Sum_probs=38.9
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEec
Q 015301 322 STAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHP 365 (409)
Q Consensus 322 s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~ 365 (409)
..+|++.++.-..++|...|..+|+.+.+++-....|++++|--
T Consensus 220 D~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 220 DTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 33588888888899999999999999999998899999999953
No 394
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.20 E-value=0.086 Score=42.72 Aligned_cols=147 Identities=20% Similarity=0.188 Sum_probs=88.3
Q ss_pred CeEEEEECCCCCEEEEEe---CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE-cCCC
Q 015301 42 RVYTSQFSNDGSFFVAAS---QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD-VGSS 117 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~---~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~-~~~~ 117 (409)
.+...+++++|+.+|... ....++++.... ...... .+ ..+..-.|++++...++...+...+++. ..++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~--~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVL--TG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeec--cC--CccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 688999999999887665 234455555443 332222 11 1577889999988888777677667764 2222
Q ss_pred ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe---cCeEEEEECC---CC------eeeeEEcCCCC
Q 015301 118 ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDLQ---AN------KCSLRIPAHKS 185 (409)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~---~~------~~~~~~~~~~~ 185 (409)
.......... .....|..++++|||..++.... ++.|.+--+. .+ ...........
T Consensus 99 ~~~~~~v~~~------------~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~ 166 (253)
T PF10647_consen 99 TGEPVEVDWP------------GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLS 166 (253)
T ss_pred cceeEEeccc------------ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccC
Confidence 2211110000 00115999999999999887663 4677776543 23 11111223356
Q ss_pred CeEEEEEeCCCCcEEEEeeCCC
Q 015301 186 DVNTVCFADETGHLIFSGSDDS 207 (409)
Q Consensus 186 ~v~~~~~~~~~~~~l~~~~~dg 207 (409)
.++.+.|. .+..+++.+...+
T Consensus 167 ~v~~v~W~-~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 167 DVTDVAWS-DDSTLVVLGRSAG 187 (253)
T ss_pred cceeeeec-CCCEEEEEeCCCC
Confidence 88999999 6676666655443
No 395
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.18 E-value=0.1 Score=46.06 Aligned_cols=115 Identities=10% Similarity=0.123 Sum_probs=70.5
Q ss_pred eeEEEEEcCC----CCeEEEEEecCeEEEEECC-----CCeeeeEEcCC---CC--CeEEEEEeCCCCcEEEEeeCCCeE
Q 015301 144 GIFSVKFSTD----GQELVAAGSDNFIYVYDLQ-----ANKCSLRIPAH---KS--DVNTVCFADETGHLIFSGSDDSLC 209 (409)
Q Consensus 144 ~v~~~~~~~~----~~~l~~~~~d~~i~v~d~~-----~~~~~~~~~~~---~~--~v~~~~~~~~~~~~l~~~~~dg~i 209 (409)
-|..+.|.|- ...+++......|.||.+. +.+.+..-..+ .- -...+.|+ |....|++-.....-
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWH-Pk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWH-PKKAILTVLTARDVS 136 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCccccc-CCCceEEEEecCcee
Confidence 3899999984 3345555567899999885 22322221111 11 12457898 666777766655544
Q ss_pred EEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeC-CCcEEEeeCCC
Q 015301 210 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRK 262 (409)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 262 (409)
.+++++ ..+......+ ...+-|.|.+|.+||+.|+++-. .=.-++||-..
T Consensus 137 V~~sV~--~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 137 VLPSVH--CDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred Eeeeee--eCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 566665 2233333333 45678999999999998876543 33567887543
No 396
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.13 E-value=0.095 Score=42.03 Aligned_cols=163 Identities=7% Similarity=0.115 Sum_probs=100.2
Q ss_pred ccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec
Q 015301 84 LRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD 163 (409)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 163 (409)
....+.++.|+|+.+.|++......-.++=..+++..........+ ....+.+..++++.++--.+
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~--------------DpE~Ieyig~n~fvi~dER~ 149 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS--------------DPETIEYIGGNQFVIVDERD 149 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC--------------ChhHeEEecCCEEEEEehhc
Confidence 3345999999999999998887777667666666655444433322 24557777778777766668
Q ss_pred CeEEEEECCCCeeeeE-------E---cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc---
Q 015301 164 NFIYVYDLQANKCSLR-------I---PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH--- 230 (409)
Q Consensus 164 ~~i~v~d~~~~~~~~~-------~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--- 230 (409)
..+.++.+.....+.. + ...+.....++|. +....|+.+-+..-+.||.+... ...-.......+
T Consensus 150 ~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d-~~~~~l~~aKEr~P~~I~~~~~~-~~~l~~~~~~~~~~~ 227 (316)
T COG3204 150 RALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWD-PVDHRLFVAKERNPIGIFEVTQS-PSSLSVHASLDPTAD 227 (316)
T ss_pred ceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecC-CCCceEEEEEccCCcEEEEEecC-CcccccccccCcccc
Confidence 8888887765422211 1 1125667899999 66666666667777777765411 101111111111
Q ss_pred ----ccceeEEEEcCC-CCeEEEEeCCCcEEEeeCCC
Q 015301 231 ----LEGITFIDSRRD-GRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 231 ----~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~ 262 (409)
-..+.++.|++. +.+|+-+.+++.+.-.|...
T Consensus 228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 228 RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred cceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 234677778764 45566666677777777654
No 397
>PHA03098 kelch-like protein; Provisional
Probab=97.12 E-value=0.053 Score=49.69 Aligned_cols=187 Identities=13% Similarity=0.137 Sum_probs=89.4
Q ss_pred CCCEEEEEeCCC------cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC-----CEEEEEEcCCCcc
Q 015301 51 DGSFFVAASQES------NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC-----AIVNIVDVGSSAR 119 (409)
Q Consensus 51 ~~~~l~t~~~d~------~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~~w~~~~~~~ 119 (409)
++..++.||.++ .+..||..++.- ...............+.+ +++..+.|+.+ ..+..||..+.+.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSW-NKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCee-eECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 456667776542 467788776522 222111111111222222 56777778755 3477788776654
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec------CeEEEEECCCCeeeeEE--cCCCCCeEEEE
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD------NFIYVYDLQANKCSLRI--PAHKSDVNTVC 191 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~--~~~~~~v~~~~ 191 (409)
........... .. +++ .-+++..+.|+.+ ..+..||..+++....- +..... .+++
T Consensus 371 ~~~~~lp~~r~-------------~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~ 434 (534)
T PHA03098 371 REEPPLIFPRY-------------NP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAI 434 (534)
T ss_pred eeCCCcCcCCc-------------cc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEE
Confidence 33222211100 01 111 1256667777632 46888998876543321 111111 1233
Q ss_pred EeCCCCcEEEEeeCCC--------eEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC-----CcEEEe
Q 015301 192 FADETGHLIFSGSDDS--------LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-----QTTKLW 258 (409)
Q Consensus 192 ~~~~~~~~l~~~~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw 258 (409)
. .++.+++.|+.++ .+.+||... .....+..+.........+.+ +++.++.|+.+ ..+.+|
T Consensus 435 ~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~--~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~y 508 (534)
T PHA03098 435 Y--HDGKIYVIGGISYIDNIKVYNIVESYNPVT--NKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVY 508 (534)
T ss_pred E--ECCEEEEECCccCCCCCcccceEEEecCCC--CceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEE
Confidence 3 3566777776432 378888651 122222211111111122222 56677777654 367778
Q ss_pred eCCC
Q 015301 259 DIRK 262 (409)
Q Consensus 259 d~~~ 262 (409)
|..+
T Consensus 509 d~~~ 512 (534)
T PHA03098 509 DDKT 512 (534)
T ss_pred eCCC
Confidence 7765
No 398
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.042 Score=47.59 Aligned_cols=103 Identities=16% Similarity=0.246 Sum_probs=67.6
Q ss_pred CCCeEE-EEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCC-------cEEEEeeCCCeEEEecccccccCCcee
Q 015301 153 DGQELV-AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETG-------HLIFSGSDDSLCKVWDRRCFISKGRAN 224 (409)
Q Consensus 153 ~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~l~~~~~dg~i~iwd~~~~~~~~~~~ 224 (409)
+.++|+ .+.....++-.|++.|+.+.....+.. |+-+.+. |+. ..-+.|-.|..|.-||+| ......+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t-~d~K~~Ql~~e~TlvGLs~n~vfriDpR--v~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDIT-PDFKFAQLTSEQTLVGLSDNSVFRIDPR--VQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeecc-CCcchhcccccccEEeecCCceEEeccc--ccCccee
Confidence 444443 444456788999999999998887665 6666676 332 123346678889999998 2233233
Q ss_pred eeeeccc----cceeEEEEcCCCCeEEEEeCCCcEEEeeC
Q 015301 225 GVLMGHL----EGITFIDSRRDGRYFISNGKDQTTKLWDI 260 (409)
Q Consensus 225 ~~~~~~~----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 260 (409)
....+|. ....|.+-..+| ++++|+.+|.|++||-
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr 458 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR 458 (644)
T ss_pred eeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh
Confidence 3333332 234555555555 7999999999999996
No 399
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.08 E-value=0.0037 Score=34.84 Aligned_cols=31 Identities=10% Similarity=0.082 Sum_probs=28.3
Q ss_pred cceEEEEEeCCCCcEEEEEecCCEEEEEEcC
Q 015301 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVG 115 (409)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~ 115 (409)
...|..++|+|...+||.++.+|.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3479999999999999999999999999983
No 400
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.0027 Score=59.16 Aligned_cols=105 Identities=10% Similarity=0.118 Sum_probs=71.3
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceee
Q 015301 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHK 130 (409)
Q Consensus 51 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~ 130 (409)
.+..++.|++.|.+-..|+..+ +..........++|++++|+.+|+.++.|-.+|.|.+||+..++..........
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a-- 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA-- 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC--
Confidence 4567888888899988887664 222233334456899999999999999999999999999998765433332211
Q ss_pred eeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEEC
Q 015301 131 GLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDL 171 (409)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 171 (409)
.+. .|..+.+..++..++++...|. +|.+
T Consensus 174 ---------p~t-~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 ---------PVT-GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ---------ccc-eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 112 3444555556667777776675 4443
No 401
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.00 E-value=0.15 Score=42.05 Aligned_cols=196 Identities=11% Similarity=0.118 Sum_probs=104.9
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee-----------ecccccceEEEEE--eCCC-CcEEEEEe
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI-----------ETKALRWTITDTS--LSPD-QRFLVYAS 104 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~-----------~~~~~~~~v~~~~--~s~~-~~~l~~~~ 104 (409)
+...|..+...|+-+.|++-+ |+.+.+++++.-....... ........+...+ -... ...|+++
T Consensus 34 ~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va- 111 (275)
T PF00780_consen 34 KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA- 111 (275)
T ss_pred ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-
Confidence 344499999999888777765 5999999987643322110 0111112344444 1123 3445544
Q ss_pred cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCC-
Q 015301 105 ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAH- 183 (409)
Q Consensus 105 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~- 183 (409)
....|.+|..............+ +.. ...+.+++|. ++.++.|.. ....+.|+.++.....+...
T Consensus 112 ~kk~i~i~~~~~~~~~f~~~~ke----~~l-------p~~~~~i~~~--~~~i~v~~~-~~f~~idl~~~~~~~l~~~~~ 177 (275)
T PF00780_consen 112 VKKKILIYEWNDPRNSFSKLLKE----ISL-------PDPPSSIAFL--GNKICVGTS-KGFYLIDLNTGSPSELLDPSD 177 (275)
T ss_pred ECCEEEEEEEECCcccccceeEE----EEc-------CCCcEEEEEe--CCEEEEEeC-CceEEEecCCCCceEEeCccC
Confidence 45689999887642211001111 111 1258889997 556777764 45888999877654433211
Q ss_pred -----------CCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceee--eeeccccceeEEEEcCCCCeEEEEe
Q 015301 184 -----------KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG--VLMGHLEGITFIDSRRDGRYFISNG 250 (409)
Q Consensus 184 -----------~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~ 250 (409)
..++..+.. +++.+|++- |..-.+.|. .+.... .+.- .....++++. ..+|+..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~--~~~e~Ll~~--~~~g~fv~~-----~G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~ 245 (275)
T PF00780_consen 178 SSSSFKSRNSSSKPLGIFQL--SDNEFLLCY--DNIGVFVNK-----NGEPSRKSTIQW-SSAPQSVAYS--SPYLIAFS 245 (275)
T ss_pred CcchhhhcccCCCceEEEEe--CCceEEEEe--cceEEEEcC-----CCCcCcccEEEc-CCchhEEEEE--CCEEEEEC
Confidence 123334444 345566543 333444443 232222 2221 2344556653 34677665
Q ss_pred CCCcEEEeeCCCC
Q 015301 251 KDQTTKLWDIRKM 263 (409)
Q Consensus 251 ~dg~i~iwd~~~~ 263 (409)
. +.|.||++.+.
T Consensus 246 ~-~~iEV~~~~~~ 257 (275)
T PF00780_consen 246 S-NSIEVRSLETG 257 (275)
T ss_pred C-CEEEEEECcCC
Confidence 5 45999999983
No 402
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.97 E-value=0.18 Score=43.71 Aligned_cols=166 Identities=13% Similarity=0.102 Sum_probs=93.0
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC----CCCeEEEEeCCCcEEEeeCCCCccccccc
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR----DGRYFISNGKDQTTKLWDIRKMSSNTTDN 270 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 270 (409)
.+.+.|++|+..|.++||+..........+.....-..+|..+..-. .....++.-....+.+|.+.........
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~- 113 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH- 113 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc-
Confidence 35578999999999999997422111112222233457888777532 2222333355667888887432111000
Q ss_pred ccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCC-CCEEEEEeCCCeEEEEEccCCceEE
Q 015301 271 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA-QKYIYTGSSDNSVYIYDLVSGAQVA 349 (409)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~v~i~d~~~~~~~~ 349 (409)
.....+.....|.........+..+--... ..++.+-+.||.+.+|+-+.-....
T Consensus 114 ------------------------g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~ 169 (418)
T PF14727_consen 114 ------------------------GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSR 169 (418)
T ss_pred ------------------------CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEE
Confidence 001123333333332222222222211112 4688889999999999976554444
Q ss_pred EeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 350 KLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 350 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
.+.. ---..-+.+.+....+++++.+..|.-|....
T Consensus 170 ~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 170 FLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred EcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHH
Confidence 4433 11223467778888899999888999998744
No 403
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.96 E-value=0.35 Score=45.64 Aligned_cols=62 Identities=11% Similarity=0.021 Sum_probs=48.2
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 324 AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 324 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
+|++||. -+..|++|++.+.+.+..-..|..++..+...-.+..++.|..=+.+.+-.....
T Consensus 839 ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 839 NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEecc
Confidence 4666654 4567999999988777777778889999999888999999987777766555443
No 404
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.96 E-value=0.17 Score=41.88 Aligned_cols=189 Identities=12% Similarity=0.077 Sum_probs=85.5
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccc
Q 015301 43 VYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESL 122 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~ 122 (409)
.+++.|..+ ..+++| ..+ +.+...+.+.............+....+....++..++ ++..|.| |...++...-.
T Consensus 64 l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~i--y~T~DgG~tW~ 137 (302)
T PF14870_consen 64 LNSISFDGN-EGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAI--YRTTDGGKTWQ 137 (302)
T ss_dssp EEEEEEETT-EEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--E--EEESSTTSSEE
T ss_pred EEEEEecCC-ceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcE--EEeCCCCCCee
Confidence 667788643 344444 444 55555565644444321111122333344434443333 3444543 43333322111
Q ss_pred cceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEE
Q 015301 123 ANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFS 202 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 202 (409)
.... +....+..+.-+++|++++++.......-||-....-...-......|..|.|. +++.+.+.
T Consensus 138 ~~~~-------------~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~-~~~~lw~~ 203 (302)
T PF14870_consen 138 AVVS-------------ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFS-PDGNLWML 203 (302)
T ss_dssp EEE--------------S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE--TTS-EEEE
T ss_pred Eccc-------------CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceec-CCCCEEEE
Confidence 1111 112358888889999988888665555677754332232233356889999999 77766554
Q ss_pred eeCCCeEEEecccccccC-CceeeeeeccccceeEEEEcCCCCeEEEEeCC
Q 015301 203 GSDDSLCKVWDRRCFISK-GRANGVLMGHLEGITFIDSRRDGRYFISNGKD 252 (409)
Q Consensus 203 ~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 252 (409)
+ ..|.|+.=+....... .+.........-.+..++|.+++...++++..
T Consensus 204 ~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 204 A-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp E-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred e-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 4 7888887762100111 11111111223347889999887776665543
No 405
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.037 Score=52.17 Aligned_cols=73 Identities=14% Similarity=0.176 Sum_probs=55.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEc
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDV 114 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~ 114 (409)
.++|++++|+.+|+.++.|-.+|.|.+||+..+..++...........|..+.+..++..++++...|. +|.+
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 589999999999999999999999999999998666655544443334555556666667888877776 5654
No 406
>PRK10115 protease 2; Provisional
Probab=96.73 E-value=0.54 Score=44.43 Aligned_cols=197 Identities=12% Similarity=0.073 Sum_probs=99.2
Q ss_pred CeEEEEECCCCCEEEEEeC-----CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC------CEEE
Q 015301 42 RVYTSQFSNDGSFFVAASQ-----ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC------AIVN 110 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~-----d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~ 110 (409)
.+..+.+||||++|+.+.+ ...|++-|+.++..+..... . .-..++|++|++.|+....+ ..|.
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~--~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD--N---VEPSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc--C---cceEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 4677889999999886533 24588999987743322221 1 11458999999877776542 3677
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe---cCeEEEEEC--CCCeeeeEEcCCCC
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDL--QANKCSLRIPAHKS 185 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~--~~~~~~~~~~~~~~ 185 (409)
.+++.++............ .... .....+.++++++..+. ++.+.+++. .+++....+.....
T Consensus 203 ~h~lgt~~~~d~lv~~e~~-----------~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 270 (686)
T PRK10115 203 RHTIGTPASQDELVYEEKD-----------DTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD 270 (686)
T ss_pred EEECCCChhHCeEEEeeCC-----------CCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC
Confidence 7888777322111111100 0011 13333447777665544 457888884 33433222322222
Q ss_pred CeEEEEEeCCCCcEEEEeeCC-CeEEEecccccccCCceeeeeecc-c-cceeEEEEcCCCCeEEEEeCCCcEEEeeC
Q 015301 186 DVNTVCFADETGHLIFSGSDD-SLCKVWDRRCFISKGRANGVLMGH-L-EGITFIDSRRDGRYFISNGKDQTTKLWDI 260 (409)
Q Consensus 186 ~v~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 260 (409)
....+. + ..+.+++....+ ...++..+. .........+..+ . ..+..+.+. .+.++++...+|.-+++-+
T Consensus 271 ~~~~~~-~-~~~~ly~~tn~~~~~~~l~~~~--~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 271 HEYSLD-H-YQHRFYLRSNRHGKNFGLYRTR--VRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred CEEEEE-e-CCCEEEEEEcCCCCCceEEEec--CCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 222222 2 333333333222 233333322 1111122333344 2 367777776 3345555666776555544
No 407
>PHA02790 Kelch-like protein; Provisional
Probab=96.63 E-value=0.38 Score=43.37 Aligned_cols=184 Identities=9% Similarity=0.001 Sum_probs=87.8
Q ss_pred CCCEEEEEeCCC-----cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC--CEEEEEEcCCCcccccc
Q 015301 51 DGSFFVAASQES-----NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC--AIVNIVDVGSSARESLA 123 (409)
Q Consensus 51 ~~~~l~t~~~d~-----~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~~w~~~~~~~~~~~ 123 (409)
++.++++||.++ ++..||..++.- ...............+. -++...++|+.+ ..+..||..+++.....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W-~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNW-IPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEE-EECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 456667777543 466788776522 22111111111112222 357777777753 35677776655433222
Q ss_pred ceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec---CeEEEEECCCCeeeeEE--cCCCCCeEEEEEeCCCCc
Q 015301 124 NVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD---NFIYVYDLQANKCSLRI--PAHKSDVNTVCFADETGH 198 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~ 198 (409)
.+..... ....+. -+|+..+.|+.+ ..+..||..+.+....- ...... .+++. -++.
T Consensus 348 ~l~~~r~-------------~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~~--~~~~ 409 (480)
T PHA02790 348 SLLKPRC-------------NPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCALV--FGRR 409 (480)
T ss_pred CCCCCCc-------------ccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEEE--ECCE
Confidence 2211100 111222 267777777754 34678888776544321 111111 12222 2466
Q ss_pred EEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC-----CcEEEeeCCC
Q 015301 199 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-----QTTKLWDIRK 262 (409)
Q Consensus 199 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~ 262 (409)
+.+.| |.+.+||.+ .........+.........+. -+++..+.|+.+ ..+..||..+
T Consensus 410 IYv~G---G~~e~ydp~--~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 410 LFLVG---RNAEFYCES--SNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred EEEEC---CceEEecCC--CCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCC
Confidence 66666 357788865 222222222221112222222 257777777754 3566777665
No 408
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.61 E-value=0.16 Score=46.36 Aligned_cols=123 Identities=15% Similarity=0.083 Sum_probs=72.9
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeC--CCCcEEEEEecCCEEEEEEcCCCcc
Q 015301 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLS--PDQRFLVYASICAIVNIVDVGSSAR 119 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~~w~~~~~~~ 119 (409)
...-+.-|.-++..++-+....+.|||...+..... ... ...+.|.++.|. |+++.+++.+....|.++.-.....
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~-~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYE-ESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEe-eee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344444455555555555556799999988753222 122 334589999985 6889999889999999986532211
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEEC
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDL 171 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 171 (409)
............+..... ...+|.+..|.++|..++.+ ++.+.|+|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~---T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSH---TPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecC---CCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 111111111122222211 12368899999999765544 367888874
No 409
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.59 E-value=0.39 Score=40.85 Aligned_cols=243 Identities=14% Similarity=0.124 Sum_probs=113.8
Q ss_pred cceeeEEecCceeEeeccceEEEEeeecCCC-c-------eeecCCCCeEEEEECCC----CCEEEEEeCC--------C
Q 015301 3 VGREVNYSGRGRFSAADSCHVLSRYLPVNGP-W-------KVDGMNSRVYTSQFSND----GSFFVAASQE--------S 62 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~-~-------~l~~h~~~v~~~~~s~~----~~~l~t~~~d--------~ 62 (409)
+++.++|.|||+.+.+.....++.+...... . ...........++++|+ +.+.++.+.. .
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 5789999999998777665544444422221 1 12234567899999994 4433333321 2
Q ss_pred cEEEEEcCCC-------eeeeeeeec---ccccceEEEEEeCCCCcEEEEEecCC-------------EEEEEEcCCCcc
Q 015301 63 NIKVYNVDKN-------WKIQKDIET---KALRWTITDTSLSPDQRFLVYASICA-------------IVNIVDVGSSAR 119 (409)
Q Consensus 63 ~i~vw~~~~~-------~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg-------------~i~~w~~~~~~~ 119 (409)
.|.-|....+ +.+...... ..| .-..|.|.|||.+.++.+..+ .|.-.+....-.
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H--~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNH--NGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS---EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCC--CCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 3444554433 111111111 233 456799999997766655332 222222221100
Q ss_pred ccccce--eceeeeeeeecCCCCcceeeEEEEEcCC-CCeEEEEEe--cC--eEEEEECCCC------------------
Q 015301 120 ESLANV--TEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGS--DN--FIYVYDLQAN------------------ 174 (409)
Q Consensus 120 ~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~--d~--~i~v~d~~~~------------------ 174 (409)
...... ......+ +. .++. ....++|+|. |.++ ++.. +. .|.+. ..+
T Consensus 161 ~dnP~~~~~~~~~~i-~A---~GlR-N~~~~~~d~~tg~l~-~~d~G~~~~dein~i--~~G~nYGWP~~~~~~~~~~~~ 232 (331)
T PF07995_consen 161 ADNPFVGDDGADSEI-YA---YGLR-NPFGLAFDPNTGRLW-AADNGPDGWDEINRI--EPGGNYGWPYCEGGPKYSGPP 232 (331)
T ss_dssp TTSTTTTSTTSTTTE-EE---E--S-EEEEEEEETTTTEEE-EEEE-SSSSEEEEEE---TT-B--TTTBSSSCSTTSS-
T ss_pred CCCccccCCCceEEE-EE---eCCC-ccccEEEECCCCcEE-EEccCCCCCcEEEEe--ccCCcCCCCCCcCCCCCCCCc
Confidence 000000 0000000 00 0111 3568999998 6544 4332 22 23222 111
Q ss_pred -----------eeeeEEcCCCCCeEEEEEeCC------CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEE
Q 015301 175 -----------KCSLRIPAHKSDVNTVCFADE------TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237 (409)
Q Consensus 175 -----------~~~~~~~~~~~~v~~~~~~~~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 237 (409)
.+...+..| ..+..+.|... .+.+|++.-..+.|....+............+......+..+
T Consensus 233 ~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v 311 (331)
T PF07995_consen 233 IGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDV 311 (331)
T ss_dssp ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEE
T ss_pred cccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEE
Confidence 122233333 56677777621 345666665566777776541111111112222344478999
Q ss_pred EEcCCCCeEEEEeCCCcEE
Q 015301 238 DSRRDGRYFISNGKDQTTK 256 (409)
Q Consensus 238 ~~~~~~~~l~~~~~dg~i~ 256 (409)
++.|||.++++...+|.|.
T Consensus 312 ~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 312 AQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEETTSEEEEEE-TTTTEE
T ss_pred EEcCCCeEEEEECCCCeEe
Confidence 9999999888888888764
No 410
>PHA03098 kelch-like protein; Provisional
Probab=96.57 E-value=0.29 Score=45.02 Aligned_cols=103 Identities=10% Similarity=0.026 Sum_probs=52.3
Q ss_pred CCcEEEEEecCC------EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec-----C
Q 015301 96 DQRFLVYASICA------IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-----N 164 (409)
Q Consensus 96 ~~~~l~~~~~dg------~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~ 164 (409)
++..++.|+.++ .+..||..+.+........... .....+.+ +++.++.|+.+ .
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R-------------~~~~~~~~--~~~lyv~GG~~~~~~~~ 358 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPR-------------KNPGVTVF--NNRIYVIGGIYNSISLN 358 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccc-------------ccceEEEE--CCEEEEEeCCCCCEecc
Confidence 456667776432 4677887776553332221110 01122222 67777777754 3
Q ss_pred eEEEEECCCCeeeeEEcC-CCCCeEEEEEeCCCCcEEEEeeCC------CeEEEeccc
Q 015301 165 FIYVYDLQANKCSLRIPA-HKSDVNTVCFADETGHLIFSGSDD------SLCKVWDRR 215 (409)
Q Consensus 165 ~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~ 215 (409)
.+..||..+.+....-.. +...-.+++. -++.+++.|+.+ ..+..||+.
T Consensus 359 ~v~~yd~~~~~W~~~~~lp~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~ 414 (534)
T PHA03098 359 TVESWKPGESKWREEPPLIFPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLN 414 (534)
T ss_pred eEEEEcCCCCceeeCCCcCcCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCC
Confidence 577888877654321111 1111122232 356777777632 357788864
No 411
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.086 Score=47.88 Aligned_cols=180 Identities=9% Similarity=0.066 Sum_probs=92.4
Q ss_pred CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCC
Q 015301 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDE 140 (409)
Q Consensus 61 d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (409)
-..|+|+++... .+....-.++ .+-.+.|+.+.. |++...+|++++|++............+..
T Consensus 63 ~~~I~If~~sG~-lL~~~~w~~~---~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~----------- 126 (829)
T KOG2280|consen 63 RPYIRIFNISGQ-LLGRILWKHG---ELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNSVGFESQ----------- 126 (829)
T ss_pred ceeEEEEecccc-chHHHHhcCC---CeeeecccCCce-EEEEeccceEEEeecchhhhcccccccccc-----------
Confidence 345888887543 4444333332 688899997654 566788999999999765433211101100
Q ss_pred cceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc---CCCCCeEEEEEeCCCC--cEEEEee-CCCeEEEecc
Q 015301 141 DEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP---AHKSDVNTVCFADETG--HLIFSGS-DDSLCKVWDR 214 (409)
Q Consensus 141 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~--~~l~~~~-~dg~i~iwd~ 214 (409)
...|..+.+..+| +++-..+|.+.+.+-.....+.+++ ....+-+|-...++.. ..++-.. ..+ ..++-.
T Consensus 127 -~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~ 202 (829)
T KOG2280|consen 127 -MSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQV 202 (829)
T ss_pred -cCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccce
Confidence 1135556665566 4444445666554432222233332 2222223333332211 1111111 001 111111
Q ss_pred cccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 215 RCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
. ........+....+.+..+..||+.++|+--...|.+.+-+....
T Consensus 203 ~---~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 203 E---ESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred e---cccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 1 111122222222456788899999999999999999988877653
No 412
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.1 Score=44.54 Aligned_cols=100 Identities=13% Similarity=0.203 Sum_probs=70.8
Q ss_pred eeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeE----EcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccccccc
Q 015301 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR----IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFIS 219 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 219 (409)
+|.++.|++|.+.+++--.+.+|.+++....+.... .+..+..|....|. .+ .-++..+..| +.+|-.. .
T Consensus 68 ~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~-~s-~e~A~i~~~G-~e~y~v~---p 141 (657)
T KOG2377|consen 68 EIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWT-SS-TEIAFITDQG-IEFYQVL---P 141 (657)
T ss_pred ceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEe-cC-eeEEEEecCC-eEEEEEc---h
Confidence 799999999999999999999999999854433322 23345568899998 43 5555555544 5566542 3
Q ss_pred CCceeeeeeccccceeEEEEcCCCCeEEEE
Q 015301 220 KGRANGVLMGHLEGITFIDSRRDGRYFISN 249 (409)
Q Consensus 220 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 249 (409)
....++..+.|+-.|.-..|.++.+.++-+
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeee
Confidence 455566667788888888898887754433
No 413
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.46 E-value=0.34 Score=38.78 Aligned_cols=103 Identities=19% Similarity=0.212 Sum_probs=68.3
Q ss_pred EEEEEeCCC-CcEEEEEecCCE-EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec--
Q 015301 88 ITDTSLSPD-QRFLVYASICAI-VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-- 163 (409)
Q Consensus 88 v~~~~~s~~-~~~l~~~~~dg~-i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 163 (409)
-..|+|+|. ..-++.+-.-|+ ..++|..+.+........... .| .-.-.|||||.+|...-.|
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~R---Hf----------yGHGvfs~dG~~LYATEndfd 136 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGR---HF----------YGHGVFSPDGRLLYATENDFD 136 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCc---ee----------ecccccCCCCcEEEeecCCCC
Confidence 345788885 455666766665 567888776654332221110 01 1224589999998876443
Q ss_pred ---CeEEEEECCCC-eeeeEEcCCCCCeEEEEEeCCCCcEEEEee
Q 015301 164 ---NFIYVYDLQAN-KCSLRIPAHKSDVNTVCFADETGHLIFSGS 204 (409)
Q Consensus 164 ---~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 204 (409)
|.|-|||...+ +.+.++..|.-....+.+. +++..++.+.
T Consensus 137 ~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm-~DGrtlvvan 180 (366)
T COG3490 137 PNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLM-ADGRTLVVAN 180 (366)
T ss_pred CCCceEEEEecccccceecccccCCcCcceeEEe-cCCcEEEEeC
Confidence 78999998754 3456678888888899999 8999888764
No 414
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.45 E-value=0.51 Score=40.63 Aligned_cols=154 Identities=10% Similarity=0.083 Sum_probs=71.9
Q ss_pred CCCCCEEEEEe--CC----CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe------------------
Q 015301 49 SNDGSFFVAAS--QE----SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS------------------ 104 (409)
Q Consensus 49 s~~~~~l~t~~--~d----~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------------------ 104 (409)
-|+|+.++++- .+ |-+.+.|-++.+....-........--..+.|.|..+.++++.
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence 47888888752 22 4577788776533322212222233456777888888888764
Q ss_pred --cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC--CCCeEEEEE-ecCeEEEEEC-CCCee--
Q 015301 105 --ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--DGQELVAAG-SDNFIYVYDL-QANKC-- 176 (409)
Q Consensus 105 --~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~-~d~~i~v~d~-~~~~~-- 176 (409)
....+.+||+.+.+..+...+..... .+..+.|.. +..+=++++ -.++|..|-- +.++.
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~-------------~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a 284 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQ-------------MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAA 284 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES-TTEE-------------EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEE
T ss_pred ccccCeEEEEECCCCcEeeEEecCCCCC-------------ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeee
Confidence 23579999999988766655543211 255666654 344433333 3455555543 33322
Q ss_pred --eeEEcC-----C------------CCCeEEEEEeCCCCcEEEEee-CCCeEEEecccc
Q 015301 177 --SLRIPA-----H------------KSDVNTVCFADETGHLIFSGS-DDSLCKVWDRRC 216 (409)
Q Consensus 177 --~~~~~~-----~------------~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 216 (409)
+..+.. - ..-|+.|..+ .+.++|+..+ .+|.|+.||+..
T Consensus 285 ~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS-lDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 285 EKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS-LDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EEEEEE--EE--SS---GGGGGG-EE------EEE--TTS-EEEEEETTTTEEEEEE-SS
T ss_pred eEEEECCCcccCcccccccccccccCCCceEeEEEc-cCCCEEEEEcccCCcEEEEecCC
Confidence 112211 0 2457899999 7777777665 689999999863
No 415
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.067 Score=50.90 Aligned_cols=153 Identities=11% Similarity=-0.008 Sum_probs=91.6
Q ss_pred eEEEEEeCCCCcEEEEE--ecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC-eEEEEEec
Q 015301 87 TITDTSLSPDQRFLVYA--SICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ-ELVAAGSD 163 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~--~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d 163 (409)
+|..+...+|+...++. +.+-.|..||+.+-......... .+...........-..++.|+|.-. ..++...|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~----pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~d 177 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTV----PLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSD 177 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhcc----ccccccchhccccccccccccCCccchhhhhccc
Confidence 56666777787665544 34447899999765433211110 0001111111222366788888532 34566678
Q ss_pred CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec----cccceeEEEE
Q 015301 164 NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG----HLEGITFIDS 239 (409)
Q Consensus 164 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~v~~~~~ 239 (409)
+.|++..+........--.-....++++|+ +.|..++.|-..|++.-|... ......+.+ ....|.+++|
T Consensus 178 lsl~V~~~~~~~~~v~s~p~t~~~Tav~WS-prGKQl~iG~nnGt~vQy~P~-----leik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 178 LSLRVKSTKQLAQNVTSFPVTNSQTAVLWS-PRGKQLFIGRNNGTEVQYEPS-----LEIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred cchhhhhhhhhhhhhcccCcccceeeEEec-cccceeeEecCCCeEEEeecc-----cceeecccCCCcCCCcceeEEEE
Confidence 888888765433222212246778999999 899999999999999988743 222222211 1467899999
Q ss_pred cCCCCeEEEE
Q 015301 240 RRDGRYFISN 249 (409)
Q Consensus 240 ~~~~~~l~~~ 249 (409)
-....++++-
T Consensus 252 l~t~eflvvy 261 (1405)
T KOG3630|consen 252 LSTQEFLVVY 261 (1405)
T ss_pred ecceeEEEEe
Confidence 8766665543
No 416
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.31 E-value=1 Score=42.74 Aligned_cols=111 Identities=15% Similarity=0.188 Sum_probs=76.9
Q ss_pred eeEEEEEcCC-CCeEEEEEe----------cCeEEEEECCCCeeeeEEcC--CCCCeEEEEEeCCCCcEEEEeeCCCeEE
Q 015301 144 GIFSVKFSTD-GQELVAAGS----------DNFIYVYDLQANKCSLRIPA--HKSDVNTVCFADETGHLIFSGSDDSLCK 210 (409)
Q Consensus 144 ~v~~~~~~~~-~~~l~~~~~----------d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 210 (409)
.+.++.|..| +.++++|+. .|.|.++.+..+..+..... -.+.+.++... +++++|. -...|+
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vr 851 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVR 851 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEE
Confidence 3555567776 677777764 47788888876433333321 24556666543 5666655 456799
Q ss_pred EecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 211 VWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 211 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
+|++. ..+.++.-..+..++..+...-.+..+++|.--+++.+...+.
T Consensus 852 Lye~t----~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 852 LYEWT----TERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred EEEcc----ccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEec
Confidence 99964 5556666777888999999988999999998888888776655
No 417
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.19 Score=42.97 Aligned_cols=143 Identities=11% Similarity=0.072 Sum_probs=83.4
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccccc
Q 015301 44 YTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLA 123 (409)
Q Consensus 44 ~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 123 (409)
+.+-|...++.|++.. .|-+.=|-+.....-....-.....++|.++.||+|.+.||+--.+.+|.+++....+.....
T Consensus 26 ngvFfDDaNkqlfavr-SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVR-SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEEEe-cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 4455554444444332 233555554332111111112223458999999999999999999999999998555433222
Q ss_pred ceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC-eeeeEEcCCCCCeEEEEEeCCCCcEEE
Q 015301 124 NVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTVCFADETGHLIF 201 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~ 201 (409)
...... ....|....|+.+ .-++.....| +-+|..... ..++..+.|...|.-..|+ ++.+.++
T Consensus 105 ~~~ck~-----------k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc-~et~v~L 169 (657)
T KOG2377|consen 105 TQECKT-----------KNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYC-PETAVIL 169 (657)
T ss_pred HHHhcc-----------CcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEc-cccceEe
Confidence 221111 1224888999876 4455555444 666655432 3344556788889999998 5555443
No 418
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.12 Score=49.33 Aligned_cols=114 Identities=11% Similarity=-0.001 Sum_probs=76.0
Q ss_pred eeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeee-----EE------cCCCCCeEEEEEeCCCCcEEEEeeCCCeEE
Q 015301 144 GIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSL-----RI------PAHKSDVNTVCFADETGHLIFSGSDDSLCK 210 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~-----~~------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 210 (409)
++..+...+|+...++... +-.|..||+++-..-. -+ ........++.|+|.-....++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 5666777777765554433 3478899987532211 11 112345678889976666677888899999
Q ss_pred EecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 211 VWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 211 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
+..+.. ....... .......++++|+|.|+.++.|-..|++.-|...
T Consensus 182 V~~~~~---~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 182 VKSTKQ---LAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred hhhhhh---hhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 988641 1112222 2345678999999999999999999999888654
No 419
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.88 Score=41.82 Aligned_cols=192 Identities=9% Similarity=0.116 Sum_probs=92.5
Q ss_pred CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeee--e--eccccceeEEEE
Q 015301 164 NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV--L--MGHLEGITFIDS 239 (409)
Q Consensus 164 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~--~~~~~~v~~~~~ 239 (409)
-.|+|++. +|..+..+.-....+..+.|+ +...|++...+|++.+|++- +..... . ......|..+.+
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~-----ge~ie~~svg~e~~~~~I~ec~~ 135 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWS--DDEELICVQKDGTVHVYGLL-----GEFIESNSVGFESQMSDIVECRF 135 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeeccc--CCceEEEEeccceEEEeecc-----hhhhcccccccccccCceeEEEE
Confidence 45888886 466666554444588899998 45567777899999999963 222211 1 112233444555
Q ss_pred cCCCCeEEEEeCCCcEEE-eeCCCCccccccccc---ccccccccccccccccce-ecc-----ccCccceeeeecccce
Q 015301 240 RRDGRYFISNGKDQTTKL-WDIRKMSSNTTDNSR---LRDYDWDYRWMEYPSYAR-RLK-----HPHDQSLATYKGHSVL 309 (409)
Q Consensus 240 ~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~ 309 (409)
..+|-.+++ .+|.+.+ -+...+........+ .....|....-....... .+. +...........|..
T Consensus 136 f~~GVavlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~- 212 (829)
T KOG2280|consen 136 FHNGVAVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL- 212 (829)
T ss_pred ecCceEEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc-
Confidence 445543333 3333333 233221111100000 000112111110000000 000 000000000001110
Q ss_pred eeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec--cCCcceeeeEEecCc
Q 015301 310 RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD--FHNAPVRDCCWHPIY 367 (409)
Q Consensus 310 ~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~--~~~~~v~~~~~s~~~ 367 (409)
......+..+..||+.++|+-=...|.|.+-+.+..+....+. .|. +-..++|..+.
T Consensus 213 ~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgnd 271 (829)
T KOG2280|consen 213 SWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGND 271 (829)
T ss_pred CCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecCC
Confidence 1112334455788999999999999999999888777766665 232 22356665443
No 420
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.20 E-value=0.34 Score=44.27 Aligned_cols=110 Identities=19% Similarity=0.233 Sum_probs=70.8
Q ss_pred EEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEc--CCCCeEEEEEecCe
Q 015301 88 ITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFS--TDGQELVAAGSDNF 165 (409)
Q Consensus 88 v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~ 165 (409)
+.-+.-+.-++.-++-+....+.|||...+........ .....|.++.|. |+++.+++.+....
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--------------~~~~~I~dLDWtst~d~qsiLaVGf~~~ 97 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--------------SEDDPIRDLDWTSTPDGQSILAVGFPHH 97 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--------------cCCCceeeceeeecCCCCEEEEEEcCcE
Confidence 44445555555555555566899999988764332222 112368999986 58888888888999
Q ss_pred EEEEECC---------CCeeeeEE--cCCC-CCeEEEEEeCCCCcEEEEeeCCCeEEEecc
Q 015301 166 IYVYDLQ---------ANKCSLRI--PAHK-SDVNTVCFADETGHLIFSGSDDSLCKVWDR 214 (409)
Q Consensus 166 i~v~d~~---------~~~~~~~~--~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 214 (409)
|.++.-. +..++..+ ..|+ .+|.+..|. ++|.+++.+ ++.+.|+|-
T Consensus 98 v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl-~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 98 VLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWL-KDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred EEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEe-cCCeEEEEe--CCEEEEECC
Confidence 9988532 11223332 3344 679999999 777666554 356888883
No 421
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.16 E-value=0.9 Score=40.58 Aligned_cols=155 Identities=14% Similarity=0.148 Sum_probs=85.2
Q ss_pred CCCeEEEEECCCCCEEE-EEe--CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC----CcEEEEEecCCEEEEE
Q 015301 40 NSRVYTSQFSNDGSFFV-AAS--QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD----QRFLVYASICAIVNIV 112 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~-t~~--~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~dg~i~~w 112 (409)
-.+|..++|. ||+.++ |.- .+|.+++=|. ....... .|..+.|.|- ...|++......|.+|
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds-------~viGqFE---hV~GlsW~P~~~~~~paLLAVQHkkhVtVW 87 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS-------KVIGQFE---HVHGLSWAPPCTADTPALLAVQHKKHVTVW 87 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCCc-------cEeeccc---eeeeeeecCcccCCCCceEEEeccceEEEE
Confidence 3678899998 565544 432 2333332221 1222223 4899999985 3345555667889999
Q ss_pred EcCCCccc--cccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCC--CeeeeEEcCCCCCeE
Q 015301 113 DVGSSARE--SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA--NKCSLRIPAHKSDVN 188 (409)
Q Consensus 113 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~--~~~~~~~~~~~~~v~ 188 (409)
.+...... .....+...-...|. --...+.|+|....|++-.....-.++++.. .....-+. ..+.|.
T Consensus 88 qL~~s~~e~~K~l~sQtcEi~e~~p-------vLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~Ih 159 (671)
T PF15390_consen 88 QLCPSTTERNKLLMSQTCEIREPFP-------VLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIH 159 (671)
T ss_pred EeccCccccccceeeeeeeccCCcc-------cCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEE
Confidence 98632211 111111111000000 0124578999988887766544434555543 23333343 567899
Q ss_pred EEEEeCCCCcEEEEe-eCCCeEEEecc
Q 015301 189 TVCFADETGHLIFSG-SDDSLCKVWDR 214 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~-~~dg~i~iwd~ 214 (409)
|.+|. ++|+.|+++ +..=.-++||-
T Consensus 160 CACWT-~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 160 CACWT-KDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred EEEec-CcCCEEEEEeCCeEEEEEecC
Confidence 99999 777776654 33345678983
No 422
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.14 E-value=0.023 Score=30.62 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=26.8
Q ss_pred CCeEEEEEeCCCC--cEEEEeeCCCeEEEeccc
Q 015301 185 SDVNTVCFADETG--HLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 185 ~~v~~~~~~~~~~--~~l~~~~~dg~i~iwd~~ 215 (409)
+.+.+++|+|..+ ++|+.+-..|.|.++|+|
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 4688999996666 799999899999999987
No 423
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.12 E-value=0.044 Score=29.57 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=26.6
Q ss_pred CCeEEEEECCCC---CEEEEEeCCCcEEEEEcCCC
Q 015301 41 SRVYTSQFSNDG---SFFVAASQESNIKVYNVDKN 72 (409)
Q Consensus 41 ~~v~~~~~s~~~---~~l~t~~~d~~i~vw~~~~~ 72 (409)
++|.++.|||+. ++|+.+-..|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 578999999854 58888888899999999854
No 424
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.06 E-value=0.64 Score=40.26 Aligned_cols=157 Identities=13% Similarity=0.166 Sum_probs=75.9
Q ss_pred CCeEEEEECCCCCEEEEEe-----------CCC-cEEEEEcCCC-eeeeeeeecccccceEEEEEeCCCCcEEEEEecCC
Q 015301 41 SRVYTSQFSNDGSFFVAAS-----------QES-NIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASICA 107 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~-----------~d~-~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 107 (409)
.....|+|.++|+++++-. ..+ .|.+++-.++ ....+.......-.....+++.+++ |.++....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4467889999998776642 123 6766654322 1111111111111246889999888 44444443
Q ss_pred EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec-------------------CeEEE
Q 015301 108 IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-------------------NFIYV 168 (409)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------------~~i~v 168 (409)
..++.+........ ......... +......+......++|.|||.+.++-+.. |.|.-
T Consensus 92 i~~~~d~~gdg~ad-~~~~~l~~~--~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 92 ILFLRDKDGDDKAD-GEREVLLSG--FGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred EEEEeCCCCCCCCC-CccEEEEEc--cCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence 33333443221110 000000000 101001122347789999999866654421 34555
Q ss_pred EECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee
Q 015301 169 YDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS 204 (409)
Q Consensus 169 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 204 (409)
++..+++......++ .....++|+ ++++++++-.
T Consensus 169 ~~pdg~~~e~~a~G~-rnp~Gl~~d-~~G~l~~tdn 202 (367)
T TIGR02604 169 YNPDGGKLRVVAHGF-QNPYGHSVD-SWGDVFFCDN 202 (367)
T ss_pred EecCCCeEEEEecCc-CCCccceEC-CCCCEEEEcc
Confidence 565554433222332 334678888 6777766533
No 425
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.04 E-value=0.79 Score=38.90 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=66.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCCc------EEEEEcCCC------eeeeeeeecccccc--------eEEEEEeCCCCcEE
Q 015301 41 SRVYTSQFSNDGSFFVAASQESN------IKVYNVDKN------WKIQKDIETKALRW--------TITDTSLSPDQRFL 100 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~------i~vw~~~~~------~~~~~~~~~~~~~~--------~v~~~~~s~~~~~l 100 (409)
+.+..+.+.|++..+++.+++|. +...++... .............+ ...+|++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 66889999976667777777777 666665431 01111111111111 34478887788887
Q ss_pred EEEecC------CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe
Q 015301 101 VYASIC------AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 101 ~~~~~d------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (409)
++.-.+ ..|..++.. ++...........................-+++++|+|+.|+++..
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 776666 678777766 4432222111111000000011233456899999999997776644
No 426
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.04 E-value=0.58 Score=37.35 Aligned_cols=229 Identities=14% Similarity=0.140 Sum_probs=129.1
Q ss_pred cceeeEEecCce-eEeeccceEEEEeeecCCCc--eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 3 VGREVNYSGRGR-FSAADSCHVLSRYLPVNGPW--KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 3 ~~~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~--~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
+.+.|+-+|||. +.........-.+-|..... .-.+....-..|..-|||..-++=+.. -|.-.|-++.+.....+
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 345677778883 33333333344444443332 223445556677788888766664433 35545555543333333
Q ss_pred ecccccceEEEEEeCCCCcEEEEEec---------CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASI---------CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKF 150 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~---------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 150 (409)
.............|.+.|...+++.. .+.|++|+...+. ..+.++.
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~-------------------------gpyGi~a 196 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGG-------------------------GPYGICA 196 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCC-------------------------CCcceEE
Confidence 33333456778899999999888752 2345555443221 3677888
Q ss_pred cCCCCeEEEEEecCeEEEEECCCCeeeeEEcCC---CCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeee
Q 015301 151 STDGQELVAAGSDNFIYVYDLQANKCSLRIPAH---KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL 227 (409)
Q Consensus 151 ~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 227 (409)
.|+|..-++.-.+..|-..|..++... .+... ...-..+ |+.+.+..-++-...+.+..+|.. ...-....+
T Consensus 197 tpdGsvwyaslagnaiaridp~~~~ae-v~p~P~~~~~gsRri-wsdpig~~wittwg~g~l~rfdPs---~~sW~eypL 271 (353)
T COG4257 197 TPDGSVWYASLAGNAIARIDPFAGHAE-VVPQPNALKAGSRRI-WSDPIGRAWITTWGTGSLHRFDPS---VTSWIEYPL 271 (353)
T ss_pred CCCCcEEEEeccccceEEcccccCCcc-eecCCCccccccccc-ccCccCcEEEeccCCceeeEeCcc---cccceeeeC
Confidence 999987777666777777787666322 22111 1122233 444677777777777888888853 111222333
Q ss_pred eccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 228 MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 228 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
.+.+..-.++.....++.-++--..|.|.-+|-++
T Consensus 272 Pgs~arpys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 272 PGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred CCCCCCcceeeeccCCcEEeeccccCceeecCccc
Confidence 44444455666666666555444556677777655
No 427
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.02 E-value=0.76 Score=39.83 Aligned_cols=59 Identities=7% Similarity=0.018 Sum_probs=34.2
Q ss_pred EeeeecCCCCEEEEEeC-------------------CCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCC
Q 015301 317 FSPEYSTAQKYIYTGSS-------------------DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWD 376 (409)
Q Consensus 317 ~~~~~s~~~~~l~~~~~-------------------dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 376 (409)
..+.+.|||.+.++-+. .|.|.-++..+++. ..+...-.....++|+++|+++++-..+
T Consensus 127 ~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 127 NSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence 34567788876665442 14455566554443 2332223345789999999887765433
No 428
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.97 E-value=0.69 Score=37.66 Aligned_cols=231 Identities=11% Similarity=0.116 Sum_probs=118.1
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccc-----cccceeceeeeeeeecCCCCcceeeEEEEEcCCC-------
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARE-----SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG------- 154 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------- 154 (409)
....|+++|.+.+.++....+...+||....... ....+... .........+.+.|+...
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~--------~~~~~~~~PTGiVfN~~~~F~vt~~ 95 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAP--------PPLAAEGTPTGQVFNGSDTFVVSGE 95 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCC--------CCCCCCCCccEEEEeCCCceEEcCC
Confidence 3567899999999998888899999999722111 11111100 000112235556665322
Q ss_pred -----CeEEEEEecCeEEEEECCCCee-----eeEEc-CCCCCe-EEEEEeC-CCCcEEEEee-CCCeEEEecccccccC
Q 015301 155 -----QELVAAGSDNFIYVYDLQANKC-----SLRIP-AHKSDV-NTVCFAD-ETGHLIFSGS-DDSLCKVWDRRCFISK 220 (409)
Q Consensus 155 -----~~l~~~~~d~~i~v~d~~~~~~-----~~~~~-~~~~~v-~~~~~~~-~~~~~l~~~~-~dg~i~iwd~~~~~~~ 220 (409)
..++.+++||+|.-|...-+.. ...+. .....| ..+++.. ..+++|+.+. ..++|.+||-.
T Consensus 96 g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~----- 170 (336)
T TIGR03118 96 GITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS----- 170 (336)
T ss_pred CcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-----
Confidence 2367788999999998533222 11221 112333 3344441 2356666554 57899999942
Q ss_pred CceeeeeeccccceeEEEEcC------CCCeEE-------------EEeCCCcEEEeeCCCCcccccccccccccccccc
Q 015301 221 GRANGVLMGHLEGITFIDSRR------DGRYFI-------------SNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYR 281 (409)
Q Consensus 221 ~~~~~~~~~~~~~v~~~~~~~------~~~~l~-------------~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 281 (409)
...+..-....++-.-..|.| .+++++ .+..-|.|-+||+..
T Consensus 171 f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G------------------- 231 (336)
T TIGR03118 171 FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG------------------- 231 (336)
T ss_pred cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-------------------
Confidence 121111000111100001111 122222 222335666666543
Q ss_pred cccccccceeccccCccceeeeecccceeeeeEEEEeee-e-cCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCc---
Q 015301 282 WMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE-Y-STAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNA--- 356 (409)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~--- 356 (409)
..++.+...............|+ | ...+.+|+---.||+|..||..+++.+..+....+
T Consensus 232 ----------------~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi 295 (336)
T TIGR03118 232 ----------------QLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPV 295 (336)
T ss_pred ----------------cEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeE
Confidence 44444433322222222222221 1 12466777666799999999999998888865433
Q ss_pred ---ceeeeEEec
Q 015301 357 ---PVRDCCWHP 365 (409)
Q Consensus 357 ---~v~~~~~s~ 365 (409)
.++.|.|..
T Consensus 296 ~i~GLWgL~fGn 307 (336)
T TIGR03118 296 KVDGLWSLTFGN 307 (336)
T ss_pred EecCeEEeeeCC
Confidence 457778765
No 429
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.91 E-value=1.7 Score=41.53 Aligned_cols=111 Identities=14% Similarity=0.151 Sum_probs=66.0
Q ss_pred CCeEEEEEecCeEEEEECCCCeeeeEEcCCCCC--------eEEEEEeC---------------CCCcEEEEeeCCCeEE
Q 015301 154 GQELVAAGSDNFIYVYDLQANKCSLRIPAHKSD--------VNTVCFAD---------------ETGHLIFSGSDDSLCK 210 (409)
Q Consensus 154 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~--------v~~~~~~~---------------~~~~~l~~~~~dg~i~ 210 (409)
+..++.++.++.|.-.|.++|+.+.++...... ...+++.. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 446777778899999999999988776432211 12233321 1234788888999998
Q ss_pred EecccccccCCceeeeeeccccce-------------eEEEEcC--CCCeEEEEeC----------CCcEEEeeCCCCcc
Q 015301 211 VWDRRCFISKGRANGVLMGHLEGI-------------TFIDSRR--DGRYFISNGK----------DQTTKLWDIRKMSS 265 (409)
Q Consensus 211 iwd~~~~~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~~----------dg~i~iwd~~~~~~ 265 (409)
-.|.+ +++....+.. .+.+ ..+.-.| .+..+++++. +|.|+-+|.++++.
T Consensus 274 ALDA~----TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 274 ALDAD----TGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred EEECC----CCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 88854 6665544321 1111 0111122 1334555542 68899999998776
Q ss_pred cccc
Q 015301 266 NTTD 269 (409)
Q Consensus 266 ~~~~ 269 (409)
.-..
T Consensus 349 ~W~~ 352 (764)
T TIGR03074 349 VWAW 352 (764)
T ss_pred eeEE
Confidence 5443
No 430
>PHA02790 Kelch-like protein; Provisional
Probab=95.86 E-value=1.2 Score=40.16 Aligned_cols=103 Identities=10% Similarity=-0.005 Sum_probs=49.1
Q ss_pred CCCeEEEEEec-----CeEEEEECCCCeeeeE--EcCCCCCeEEEEEeCCCCcEEEEeeCCC--eEEEecccccccCCce
Q 015301 153 DGQELVAAGSD-----NFIYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDDS--LCKVWDRRCFISKGRA 223 (409)
Q Consensus 153 ~~~~l~~~~~d-----~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~ 223 (409)
++..+++|+.+ ..+..||..+++.... +...... .+++. -++.+.+.|+.++ .+..||.. ......
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~--~~~~iYviGG~~~~~sve~ydp~--~n~W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGVP--ANNKLYVVGGLPNPTSVERWFHG--DAAWVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEEE--ECCEEEEECCcCCCCceEEEECC--CCeEEE
Confidence 45556677653 3577788877654332 2111111 22232 3577777777543 57777753 111122
Q ss_pred eeeeeccccceeEEEEcCCCCeEEEEeCCC---cEEEeeCCC
Q 015301 224 NGVLMGHLEGITFIDSRRDGRYFISNGKDQ---TTKLWDIRK 262 (409)
Q Consensus 224 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~ 262 (409)
...+.........+ .-+|+..+.|+.++ .+..||.++
T Consensus 346 ~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 346 MPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred CCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCC
Confidence 22222111111122 22567777777543 355666544
No 431
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.65 E-value=0.3 Score=45.10 Aligned_cols=71 Identities=7% Similarity=0.134 Sum_probs=50.8
Q ss_pred EEEEeeeec--CCCCEEEEEeCCCeEEEEEccCCc-eEEE--eccCCcceeeeEEecCc---C---eEEeecCCCeEEEE
Q 015301 314 RCYFSPEYS--TAQKYIYTGSSDNSVYIYDLVSGA-QVAK--LDFHNAPVRDCCWHPIY---P---MLISSSWDCNIVRW 382 (409)
Q Consensus 314 ~~~~~~~~s--~~~~~l~~~~~dg~v~i~d~~~~~-~~~~--~~~~~~~v~~~~~s~~~---~---~l~s~~~dg~i~iw 382 (409)
..+|.+++. ...++||+++....|.||-..... .... -..|...|.+++|-++. . .|++++-.|.+.+|
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~ 243 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTF 243 (717)
T ss_pred CceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEE
Confidence 356788887 778899999988888888665421 1111 11255678899997654 2 78888999999999
Q ss_pred ec
Q 015301 383 EI 384 (409)
Q Consensus 383 ~~ 384 (409)
++
T Consensus 244 ~I 245 (717)
T PF08728_consen 244 KI 245 (717)
T ss_pred EE
Confidence 88
No 432
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.59 E-value=0.95 Score=36.37 Aligned_cols=184 Identities=14% Similarity=0.104 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCeEEEEEecC--eEEEEECCCCeeeeEEcCC-CCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCC
Q 015301 145 IFSVKFSTDGQELVAAGSDN--FIYVYDLQANKCSLRIPAH-KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG 221 (409)
Q Consensus 145 v~~~~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 221 (409)
...+.|..+|.++-+.+.-| .|+.+|+.+++......-. .---..++.. ++.+..-.-.++...+||.. ..
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~----tl 120 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPN----TL 120 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETT----TT
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccc----cc
Confidence 55677777888777777654 7999999999877655322 2333556665 44555556678999999964 44
Q ss_pred ceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcccee
Q 015301 222 RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 301 (409)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (409)
+.+..+.- .+.=..++ .+++.|+.+.....+.++|..+....... .
T Consensus 121 ~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i-------------------------------~ 166 (264)
T PF05096_consen 121 KKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTI-------------------------------Q 166 (264)
T ss_dssp EEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEE-------------------------------E
T ss_pred eEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEE-------------------------------E
Confidence 55554432 23446666 45777777777778999997764322211 1
Q ss_pred eeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc------------C---CcceeeeEEecC
Q 015301 302 TYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF------------H---NAPVRDCCWHPI 366 (409)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~------------~---~~~v~~~~~s~~ 366 (409)
....... .....-+.+- +|.+.|=.-....|...|..+|+....+.. + ..-.+.++|.|.
T Consensus 167 V~~~g~p----v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~ 241 (264)
T PF05096_consen 167 VTDNGRP----VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE 241 (264)
T ss_dssp -EETTEE-------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT
T ss_pred EEECCEE----CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC
Confidence 1111110 1111112221 466666666667788889889988776521 1 245789999987
Q ss_pred cC-eEEee
Q 015301 367 YP-MLISS 373 (409)
Q Consensus 367 ~~-~l~s~ 373 (409)
.. +++||
T Consensus 242 ~~~l~vTG 249 (264)
T PF05096_consen 242 TDRLFVTG 249 (264)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEe
Confidence 77 45554
No 433
>PRK10115 protease 2; Provisional
Probab=95.59 E-value=2.2 Score=40.52 Aligned_cols=113 Identities=9% Similarity=0.065 Sum_probs=67.4
Q ss_pred ceEEEEEeCCCCcEEEEEecC-----CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE
Q 015301 86 WTITDTSLSPDQRFLVYASIC-----AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160 (409)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~~d-----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (409)
..+..+.|+||+++|+.+... -.|++.|+.++..... .+. . .-..++|.+|++.|+..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-~i~----~------------~~~~~~w~~D~~~~~y~ 189 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-LLD----N------------VEPSFVWANDSWTFYYV 189 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-ccc----C------------cceEEEEeeCCCEEEEE
Confidence 357788999999999876432 2588888877642111 000 0 11458999999877766
Q ss_pred Eec------CeEEEEECCCC--eeeeEEcCCCCCeEEEEEeCCCCcEEEEeeC---CCeEEEeccc
Q 015301 161 GSD------NFIYVYDLQAN--KCSLRIPAHKSDVNTVCFADETGHLIFSGSD---DSLCKVWDRR 215 (409)
Q Consensus 161 ~~d------~~i~v~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~ 215 (409)
..+ ..|+.+++.++ +-...+........-..+.+.++.+++..+. ++.+.+++..
T Consensus 190 ~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 190 RKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 542 36888898887 3333343323333322333356776655443 3568888853
No 434
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.49 E-value=2.3 Score=40.22 Aligned_cols=89 Identities=17% Similarity=0.217 Sum_probs=54.3
Q ss_pred cceEEEEEeCCCCcEEEEEecCCEEEEEEcCCC-c----ccc-ccceeceeeeeeeecCCCCcceeeEEEEEcCC---CC
Q 015301 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVGSS-A----RES-LANVTEIHKGLDFSADGDEDEFGIFSVKFSTD---GQ 155 (409)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~-~----~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~ 155 (409)
.-.|..+.++|+|++|+..+..|. .|..+... . ... ..........+.-.-........|..+.|+|. +.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 347899999999999999987664 44444221 0 000 00000000000001111234557999999995 57
Q ss_pred eEEEEEecCeEEEEECCCC
Q 015301 156 ELVAAGSDNFIYVYDLQAN 174 (409)
Q Consensus 156 ~l~~~~~d~~i~v~d~~~~ 174 (409)
.|++-+.|+.+++||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8999999999999999654
No 435
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.45 E-value=0.88 Score=42.25 Aligned_cols=172 Identities=10% Similarity=0.061 Sum_probs=95.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeee------eee-------------cccccceEEEEEeCC--CC
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQK------DIE-------------TKALRWTITDTSLSP--DQ 97 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~------~~~-------------~~~~~~~v~~~~~s~--~~ 97 (409)
..+..+++. . ..+|++|. .+.|.||+.+.-..... ... .......|+.|.... +.
T Consensus 39 fKNNLtals--q-~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~ 114 (717)
T PF08728_consen 39 FKNNLTALS--Q-RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGE 114 (717)
T ss_pred cccceeEEe--c-CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCe
Confidence 334444443 2 66777765 67899999865422110 000 000111455555433 45
Q ss_pred cEEEEEecCCEEEEEEcCCCccccccc---eeceeeeeeeecC-CCCcceeeEEEEEc--CCCCeEEEEEecCeEEEEEC
Q 015301 98 RFLVYASICAIVNIVDVGSSARESLAN---VTEIHKGLDFSAD-GDEDEFGIFSVKFS--TDGQELVAAGSDNFIYVYDL 171 (409)
Q Consensus 98 ~~l~~~~~dg~i~~w~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~v~d~ 171 (409)
..|+.+..||.|.+|.+++-....... ...........+. ...-...++.++++ ...++||+++....|.||-+
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence 688999999999999874321000000 0000000000000 00112368999998 78888998888888888765
Q ss_pred CCC--eee-eEEcCCCCCeEEEEEeCCC----C-cEEEEeeCCCeEEEecc
Q 015301 172 QAN--KCS-LRIPAHKSDVNTVCFADET----G-HLIFSGSDDSLCKVWDR 214 (409)
Q Consensus 172 ~~~--~~~-~~~~~~~~~v~~~~~~~~~----~-~~l~~~~~dg~i~iwd~ 214 (409)
... +.. ..-..|...|.+++|.+.+ | ..+++++-.|.+.+|++
T Consensus 195 ~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 195 ALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 432 111 1111256678899998432 2 27888899999998887
No 436
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.26 E-value=0.046 Score=50.60 Aligned_cols=171 Identities=17% Similarity=0.201 Sum_probs=89.4
Q ss_pred eeecCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCe-eeeeee---ecccccceEEEEEeCC---CCcEEEEEecC
Q 015301 35 KVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNW-KIQKDI---ETKALRWTITDTSLSP---DQRFLVYASIC 106 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~-~~~~~~---~~~~~~~~v~~~~~s~---~~~~l~~~~~d 106 (409)
.++|..+.|-.++|.. +-..++ -.-|.+.||+++--+ .+...+ ....-...+.-+.|.| +..++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 4568888888888832 111122 223678899976310 111111 0111112345555655 56778888888
Q ss_pred CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECC-----CCeeeeEEc
Q 015301 107 AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ-----ANKCSLRIP 181 (409)
Q Consensus 107 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-----~~~~~~~~~ 181 (409)
+.+++..+.+...............+.+...+ -+.--..+|||..++.++.||.+..|.+. ...++...+
T Consensus 205 ~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g-----~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewk 279 (1283)
T KOG1916|consen 205 GEIRLLNINRALRSLFRSHSQRVTDMAFFAEG-----VLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWK 279 (1283)
T ss_pred CceeEeeechHHHHHHHhcCCCcccHHHHhhc-----hhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccC
Confidence 99999888765542222211111111111100 11112379999999999999998888653 233444556
Q ss_pred CCC-CCeEEEEEeCCCC---------cEEEEee-CCCeEEEec
Q 015301 182 AHK-SDVNTVCFADETG---------HLIFSGS-DDSLCKVWD 213 (409)
Q Consensus 182 ~~~-~~v~~~~~~~~~~---------~~l~~~~-~dg~i~iwd 213 (409)
.|. .+-.|.-++ .+. .++++++ .+..+++|.
T Consensus 280 phd~~p~vC~lc~-~~~~~~v~i~~w~~~Itttd~nre~k~w~ 321 (1283)
T KOG1916|consen 280 PHDKHPRVCWLCH-KQEILVVSIGKWVLRITTTDVNREEKFWA 321 (1283)
T ss_pred CCCCCCceeeeec-cccccCCccceeEEEEecccCCcceeEee
Confidence 666 333333333 221 1233333 445688887
No 437
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.21 E-value=1.3 Score=35.63 Aligned_cols=183 Identities=11% Similarity=0.115 Sum_probs=103.8
Q ss_pred CeEEEEECCCCCEEEEEeCCC--cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcc
Q 015301 42 RVYTSQFSNDGSFFVAASQES--NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~ 119 (409)
-...+.|..+|.++-+.+.-| .|+.+|+++++......-.... --..++.. +++.....-.++...+||..+-+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~--FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY--FGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----EEEEEEE-TTEEEEEESSSSEEEEEETTTTEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc--cceeEEEE-CCEEEEEEecCCeEEEEccccceE
Confidence 345688877888887777665 6999999998554332211111 11223333 344555566789999999987655
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCC-----CCCeEEEEEeC
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAH-----KSDVNTVCFAD 194 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-----~~~v~~~~~~~ 194 (409)
........ .=+.++ .+++.|+.......++.+|.++.+....+... -..++.+.|.
T Consensus 123 ~~~~~y~~----------------EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i- 183 (264)
T PF05096_consen 123 IGTFPYPG----------------EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI- 183 (264)
T ss_dssp EEEEE-SS----------------S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-
T ss_pred EEEEecCC----------------cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-
Confidence 43332221 123444 46777887777789999999888776665321 1345667775
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeeee---------------ccccceeEEEEcCCCCeEEEEeC
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM---------------GHLEGITFIDSRRDGRYFISNGK 251 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~ 251 (409)
++.+.|=.-....|...|.. ++.....+. ...+-.+.|++.|..+.|...+.
T Consensus 184 -~G~IyANVW~td~I~~Idp~----tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 184 -NGKIYANVWQTDRIVRIDPE----TGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp -TTEEEEEETTSSEEEEEETT----T-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred -cCEEEEEeCCCCeEEEEeCC----CCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 55555555555555555632 343333221 11345789999987776665553
No 438
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.06 E-value=1.4 Score=35.28 Aligned_cols=201 Identities=13% Similarity=0.069 Sum_probs=120.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (409)
..-..++-+|||..-.++...+.|-=.|-.+++.....+.... ....+..-||+...++-+.. -|.-.|-++.+..
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga---~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt 137 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGA---SPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT 137 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCC---CCceEEECCCCCeeEecCcc-eeEEecCcccceE
Confidence 4566788899999888888888888888888865554444433 45667788888877764433 4555555554433
Q ss_pred cccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcC-CCCCeEEEEEeCCCCcE
Q 015301 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA-HKSDVNTVCFADETGHL 199 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 199 (409)
......+ ..........|.+.|++-+++.. |.---.|..++ .+..+.. .......|+.. +++..
T Consensus 138 ~f~lp~~------------~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~-~i~vfpaPqG~gpyGi~at-pdGsv 202 (353)
T COG4257 138 RFPLPLE------------HADANLETAVFDPWGNLWFTGQI-GAYGRLDPARN-VISVFPAPQGGGPYGICAT-PDGSV 202 (353)
T ss_pred Eeecccc------------cCCCcccceeeCCCccEEEeecc-ccceecCcccC-ceeeeccCCCCCCcceEEC-CCCcE
Confidence 2222111 11224777889999988777753 21111222221 1222221 23345678888 88888
Q ss_pred EEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 200 IFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 200 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
-++.-.+..|-..|... ...+.+..-......-..+..+|.|+.-++-...+.+..+|-..
T Consensus 203 wyaslagnaiaridp~~--~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 203 WYASLAGNAIARIDPFA--GHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred EEEeccccceEEccccc--CCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 88877778888777531 11122222222233445566677888778777777888877654
No 439
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.57 E-value=0.32 Score=38.33 Aligned_cols=82 Identities=11% Similarity=0.163 Sum_probs=51.1
Q ss_pred eCCCCcEEEEEecCCEEEEEEcCCCcccccc-ceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEEC
Q 015301 93 LSPDQRFLVYASICAIVNIVDVGSSARESLA-NVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDL 171 (409)
Q Consensus 93 ~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 171 (409)
+..++.+|++.+.+|.+++||+.+.+..... .+.......... .......|..+.++.+|.-+++-+ +|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~--~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVS--DKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccc--cCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 3346888999999999999999988754333 111111000000 002344688888888887766654 578888887
Q ss_pred CCCeee
Q 015301 172 QANKCS 177 (409)
Q Consensus 172 ~~~~~~ 177 (409)
.-+..+
T Consensus 95 ~L~~W~ 100 (219)
T PF07569_consen 95 DLGCWI 100 (219)
T ss_pred ccceeE
Confidence 654443
No 440
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=1.3 Score=43.62 Aligned_cols=32 Identities=13% Similarity=0.106 Sum_probs=26.6
Q ss_pred eeEEEEEcCCCCeEEEEEecCeEEEEECCCCe
Q 015301 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANK 175 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 175 (409)
....++|+|.-..++.++..|.|.++-...-+
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccceE
Confidence 45678999999999999999999999765443
No 441
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.49 E-value=1.7 Score=33.57 Aligned_cols=102 Identities=18% Similarity=0.224 Sum_probs=63.9
Q ss_pred cEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec---C---eEEEE--
Q 015301 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD---N---FIYVY-- 169 (409)
Q Consensus 98 ~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~---~i~v~-- 169 (409)
..|+.+.....|.+|++.............. +.|..+.++..|++|++--.+ . .+++|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv--------------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~N 94 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV--------------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFN 94 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch--------------hheeEEEeccccceEEEEEeecCCccceEEEEEEE
Confidence 4555556678899999985555444333322 258999999999999986542 2 45554
Q ss_pred -ECC--CCeeee-EEcC---------------------CCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 170 -DLQ--ANKCSL-RIPA---------------------HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 170 -d~~--~~~~~~-~~~~---------------------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
+.. ..+++. .+-+ -..++.+++..|-.|++++.. ++.+.+|.++
T Consensus 95 Wr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~ 163 (215)
T PF14761_consen 95 WRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLK 163 (215)
T ss_pred hhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEE
Confidence 221 111111 1111 234678888887778877654 5679999876
No 442
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.47 E-value=0.064 Score=49.72 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=64.1
Q ss_pred eeEEEEEcC-CCCeEEEEEecCeEEEEECC--CCeeeeEE-----cCCCCCeEEEEEeC--CCCcEEEEeeCCCeEEEec
Q 015301 144 GIFSVKFST-DGQELVAAGSDNFIYVYDLQ--ANKCSLRI-----PAHKSDVNTVCFAD--ETGHLIFSGSDDSLCKVWD 213 (409)
Q Consensus 144 ~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~--~~~~~~~~-----~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd 213 (409)
.+..+.|.. +...+. -.-|.+.|||+. .|+....+ ..-..++.-+.|+| .+.-++..+..++.+++..
T Consensus 134 ~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~ 211 (1283)
T KOG1916|consen 134 GVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLN 211 (1283)
T ss_pred CcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEee
Confidence 566677643 222222 223678888875 34432222 22334555666664 4556777777888888766
Q ss_pred ccccccCCceeeeeeccccceeEEE-----------EcCCCCeEEEEeCCCcEEEeeC
Q 015301 214 RRCFISKGRANGVLMGHLEGITFID-----------SRRDGRYFISNGKDQTTKLWDI 260 (409)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~~~~~dg~i~iwd~ 260 (409)
.. ......+++|...+..++ .+|||..++..+.||.++.|.+
T Consensus 212 ~~-----ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 212 IN-----RALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred ec-----hHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 43 111244455665554443 5788888888888888877765
No 443
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.45 E-value=2.3 Score=34.83 Aligned_cols=204 Identities=16% Similarity=0.119 Sum_probs=110.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcC------CCeeeeeeeec-c--cccceEEEEEeCCCCc------------E
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVD------KNWKIQKDIET-K--ALRWTITDTSLSPDQR------------F 99 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~------~~~~~~~~~~~-~--~~~~~v~~~~~s~~~~------------~ 99 (409)
..-+.|+|+|.+.+-++...-+...+||.. ....+...... . .....++.+.|+.... .
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 345789999999887777777889999986 12122221111 0 1123577777875332 2
Q ss_pred EEEEecCCEEEEEEcCCCcc---ccccceeceeeeeeeecCCCCcceeeEEEEEcC--CCCeEEEEEe-cCeEEEEECCC
Q 015301 100 LVYASICAIVNIVDVGSSAR---ESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--DGQELVAAGS-DNFIYVYDLQA 173 (409)
Q Consensus 100 l~~~~~dg~i~~w~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~-d~~i~v~d~~~ 173 (409)
++.+++||+|.-|...-... ........... ..--..+++.. .+.+|..+.. .++|.++|-.-
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~-----------gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f 171 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQ-----------GNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF 171 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCC-----------cceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence 56778899999998543322 11111110000 11123344443 3556655543 68888888532
Q ss_pred Ceeee--E-----EcCCCCCeEEEEEeCCCCcEEE-------------EeeCCCeEEEecccccccCCceeeeee--ccc
Q 015301 174 NKCSL--R-----IPAHKSDVNTVCFADETGHLIF-------------SGSDDSLCKVWDRRCFISKGRANGVLM--GHL 231 (409)
Q Consensus 174 ~~~~~--~-----~~~~~~~v~~~~~~~~~~~~l~-------------~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~ 231 (409)
.+... . ++..- ....+.-. .+++++ .|..-|.|-+||+ .+..++.+. +.-
T Consensus 172 ~~~~~~g~F~DP~iPagy-APFnIqni--g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-----~G~l~~r~as~g~L 243 (336)
T TIGR03118 172 RPPPLPGSFIDPALPAGY-APFNVQNL--GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-----NGQLLRRVASSGRL 243 (336)
T ss_pred ccccCCCCccCCCCCCCC-CCcceEEE--CCeEEEEEEecCCcccccccCCCcceEEEEcC-----CCcEEEEeccCCcc
Confidence 22110 0 11100 11111111 122222 3334578999996 566666552 233
Q ss_pred cceeEEEEcC------CCCeEEEEeCCCcEEEeeCCCC
Q 015301 232 EGITFIDSRR------DGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 232 ~~v~~~~~~~------~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
...+.|+..| .+.+|+---.||+|..||..+.
T Consensus 244 NaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 244 NAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred cCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC
Confidence 4556677655 4677777777999999998763
No 444
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.34 E-value=0.0076 Score=51.40 Aligned_cols=144 Identities=13% Similarity=0.147 Sum_probs=95.9
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEE-EEecCCEEEEEEcCCCcc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSAR 119 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~~w~~~~~~~ 119 (409)
..-....|-|.+.-++.++.+..+..||-... .... .. ..+....++|..++..++ .+-..+.+.+||+.+...
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~agq-~~le-~n---~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt 109 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILE-LN---PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT 109 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhhhcc-eecc-cC---CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence 33344567787777888888989999986543 2221 11 122466788888776655 456778999999987654
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcE
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHL 199 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 199 (409)
......... . -.-+.|++....++.+...|.+.|++..+.+.....-.|...++++++. +.+ +
T Consensus 110 qqLE~gg~~-------------s--~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~-lEd-~ 172 (615)
T KOG2247|consen 110 QQLESGGTS-------------S--KSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT-LED-Y 172 (615)
T ss_pred HHHhccCcc-------------h--HHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEec-ccc-e
Confidence 333222111 1 1127789988899999889999999988776665555589999999998 443 3
Q ss_pred EEEeeCC
Q 015301 200 IFSGSDD 206 (409)
Q Consensus 200 l~~~~~d 206 (409)
.+.++.|
T Consensus 173 vil~dcd 179 (615)
T KOG2247|consen 173 VILCDCD 179 (615)
T ss_pred eeecCcH
Confidence 3333333
No 445
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.29 E-value=5.3 Score=38.34 Aligned_cols=127 Identities=12% Similarity=0.055 Sum_probs=68.8
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccc-----eEEEEEeC----------------CCCcEEEEEecCCEEE
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRW-----TITDTSLS----------------PDQRFLVYASICAIVN 110 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~-----~v~~~~~s----------------~~~~~l~~~~~dg~i~ 110 (409)
+..|..++.++.|.-.|..+++.+.+......... ....+++. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 45677777788888889888866655332211110 11122221 1345788888999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC--CCCeEEEEEe----------cCeEEEEECCCCeeee
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--DGQELVAAGS----------DNFIYVYDLQANKCSL 178 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~----------d~~i~v~d~~~~~~~~ 178 (409)
-.|.++++........... .+..........-..+.-.| .+..+++|+. +|.|+-+|.++|+.+.
T Consensus 274 ALDA~TGk~~W~fg~~G~v---dl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTV---DLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEEEEecCCCce---eeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 9999988765432211100 00000000000001111112 1335666643 6889999999999988
Q ss_pred EEc
Q 015301 179 RIP 181 (409)
Q Consensus 179 ~~~ 181 (409)
.+.
T Consensus 351 ~~~ 353 (764)
T TIGR03074 351 AWD 353 (764)
T ss_pred EEe
Confidence 774
No 446
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.12 E-value=0.42 Score=37.67 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=48.8
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCeeeeee------eec-----ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCC
Q 015301 48 FSNDGSFFVAASQESNIKVYNVDKNWKIQKD------IET-----KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGS 116 (409)
Q Consensus 48 ~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~------~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~ 116 (409)
+..++++|++...+|.+++||+.+++..... +.. ......|..+.++.+|.-|++-+ +|..+.|+.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3456889999999999999999987554332 111 02345788889998887777655 57788887754
Q ss_pred C
Q 015301 117 S 117 (409)
Q Consensus 117 ~ 117 (409)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 4
No 447
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.01 E-value=2 Score=42.39 Aligned_cols=151 Identities=15% Similarity=0.313 Sum_probs=84.9
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEe--------CCCCcEEEEEecCCEEEEEEcCCCcccccc
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSL--------SPDQRFLVYASICAIVNIVDVGSSARESLA 123 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~--------s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 123 (409)
++.-+| .|+.+.+|+++++......-.... .|..+.. -|.=+++++-+.--.|.++-+.-.+.....
T Consensus 91 ~RaWiT--iDn~L~lWny~~~~e~~~~d~~sh---tIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~ 165 (1311)
T KOG1900|consen 91 GRAWIT--IDNNLFLWNYESDNELAEYDGLSH---TILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL 165 (1311)
T ss_pred cceEEE--eCCeEEEEEcCCCCccccccchhh---hheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc
Confidence 444444 467899999998655444322222 4555442 333345555554566666655433221111
Q ss_pred ceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEE--ECCCC---e-e----------------eeEEc
Q 015301 124 NVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVY--DLQAN---K-C----------------SLRIP 181 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~--d~~~~---~-~----------------~~~~~ 181 (409)
...... ..... ....|.++....+|+.+++| .||.|+-. ....+ + + +..+.
T Consensus 166 ~~f~~~--~~i~~----dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~ 238 (1311)
T KOG1900|consen 166 SIFNTS--FKISV----DGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP 238 (1311)
T ss_pred cccccc--eeeec----CCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC
Confidence 111111 11111 12258899988888866655 56644322 11211 0 0 11223
Q ss_pred -CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 182 -AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 182 -~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
.+..+|..++.. ...+++.+-+..|+|.+||+.
T Consensus 239 ~~~~dpI~qi~ID-~SR~IlY~lsek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 239 GSSKDPIRQITID-NSRNILYVLSEKGTVSAYDIG 272 (1311)
T ss_pred CCCCCcceeeEec-cccceeeeeccCceEEEEEcc
Confidence 567799999998 788899999999999999985
No 448
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.89 E-value=4.3 Score=35.86 Aligned_cols=63 Identities=24% Similarity=0.288 Sum_probs=47.9
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
....++++++..|.|++||.- .......+.+....|..+..+.+|+++++.+.. .+.+-|++-
T Consensus 571 TesGyIa~as~kGDirLyDRi----g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~i 633 (776)
T COG5167 571 TESGYIAAASRKGDIRLYDRI----GKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVPI 633 (776)
T ss_pred ccCceEEEecCCCceeeehhh----cchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEeccc
Confidence 345689999999999999942 333344456677889999999999988877754 688888764
No 449
>PRK13684 Ycf48-like protein; Provisional
Probab=93.62 E-value=4.1 Score=34.78 Aligned_cols=154 Identities=10% Similarity=0.044 Sum_probs=79.9
Q ss_pred CCCeEEEEEeCCCCcEEEEeeCCCeEEE-ecccccccCCc-eeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 184 KSDVNTVCFADETGHLIFSGSDDSLCKV-WDRRCFISKGR-ANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 184 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
...+.++.+. +++.++++ +..|.+.. +|- .+. -..........+.++.+.++++.++++ ..|.+.+=...
T Consensus 172 ~g~~~~i~~~-~~g~~v~~-g~~G~i~~s~~~-----gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRS-PDGKYVAV-SSRGNFYSTWEP-----GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEEC-CCCeEEEE-eCCceEEEEcCC-----CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC
Confidence 4568889988 66655554 44565543 231 111 111222334678889999988876654 55655432122
Q ss_pred CCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEE
Q 015301 262 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d 341 (409)
... .-....... .......+++.+.+++..+++| .+|.+. ..
T Consensus 244 ~G~----------------------------------sW~~~~~~~--~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S 285 (334)
T PRK13684 244 DLE----------------------------------SWSKPIIPE--ITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VS 285 (334)
T ss_pred CCC----------------------------------ccccccCCc--cccccceeeEEEcCCCCEEEEc-CCCeEE-Ee
Confidence 110 000000000 0000122345567767765554 567554 34
Q ss_pred ccCCceEEEecc---CCcceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 342 LVSGAQVAKLDF---HNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 342 ~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
...++.-...+. -....+.+.|..+++.+++ +..|.|..|+-
T Consensus 286 ~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~~ 330 (334)
T PRK13684 286 KDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYVG 330 (334)
T ss_pred CCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEecC
Confidence 455554444322 2235777888776666554 56799988764
No 450
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.59 E-value=6.9 Score=37.24 Aligned_cols=28 Identities=18% Similarity=0.413 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCeEEEEEecCeEEEEECC
Q 015301 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQ 172 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 172 (409)
.|..+.++|+|.+++..|..| |.|..+.
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP 113 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLELP 113 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEec
Confidence 599999999999999888755 5555553
No 451
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=93.55 E-value=4.7 Score=35.19 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=20.6
Q ss_pred CeEEEEECCCCeeeeEEcCC--CCCeEEEEEeCCCCcEEEEeeC
Q 015301 164 NFIYVYDLQANKCSLRIPAH--KSDVNTVCFADETGHLIFSGSD 205 (409)
Q Consensus 164 ~~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~ 205 (409)
..+.+||..+.+....-... ...-.++... ++++.+.|+.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~--~~~iYv~GG~ 230 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIK--GNKLWLINGE 230 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEE--CCEEEEEeee
Confidence 35888998876654321111 1112234443 5666666664
No 452
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.52 E-value=1.9 Score=30.48 Aligned_cols=114 Identities=14% Similarity=0.195 Sum_probs=68.3
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCeee-------eeeeecccccceEEEEE---eCC--CCcEEEEEecCCEEEEE
Q 015301 45 TSQFSNDGSFFVAASQESNIKVYNVDKNWKI-------QKDIETKALRWTITDTS---LSP--DQRFLVYASICAIVNIV 112 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~-------~~~~~~~~~~~~v~~~~---~s~--~~~~l~~~~~dg~i~~w 112 (409)
.-.|......|++++.-|.|.|++....... ...+.... .|++++ |.| +...|+.|+ ...+..|
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~---~italaaG~l~~~~~~D~LliGt-~t~llaY 78 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQ---EITALAAGRLKPDDGRDCLLIGT-QTSLLAY 78 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCC---ceEEEEEEecCCCCCcCEEEEec-cceEEEE
Confidence 3456666678888888899999986543211 12222333 566665 432 345666666 5678899
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC----CCCeEEEEEecCeEEEEECCCCeeeeE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST----DGQELVAAGSDNFIYVYDLQANKCSLR 179 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~v~d~~~~~~~~~ 179 (409)
|+............+ .|.++.+-. +..++++|+ +..|.-+|.+..+...+
T Consensus 79 DV~~N~d~Fyke~~D----------------Gvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 79 DVENNSDLFYKEVPD----------------GVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWT 132 (136)
T ss_pred EcccCchhhhhhCcc----------------ceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEE
Confidence 998876554444433 356665532 344455554 56787788765554443
No 453
>PRK13615 lipoprotein LpqB; Provisional
Probab=93.41 E-value=6.2 Score=36.15 Aligned_cols=160 Identities=5% Similarity=-0.031 Sum_probs=83.5
Q ss_pred ceeeEEecCceeEeeccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeeccc
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKA 83 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~ 83 (409)
....+.|+||...+...........+.........-...++.-.|.++| .+-+.-.+...++.................
T Consensus 336 ~~s~avS~dg~~~A~v~~~~~l~vg~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~~~ 414 (557)
T PRK13615 336 ADAATLSADGRQAAVRNASGVWSVGDGDRDAVLLDTRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVSWT 414 (557)
T ss_pred cccceEcCCCceEEEEcCCceEEEecCCCcceeeccCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeecccc
Confidence 4677889999876664433222222222222221223357788888888 666665544455555433212222111111
Q ss_pred ccceEEEEEeCCCCcEEEEEec---CCEEEEEEcCCCccccccce-eceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE
Q 015301 84 LRWTITDTSLSPDQRFLVYASI---CAIVNIVDVGSSARESLANV-TEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~---dg~i~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
....|..+..|+||..++.-.. .++|.+--+...... -..+ ... .... .... .+.++.|..++...+.
T Consensus 415 ~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~-P~~L~~~p---~~l~---~~l~-~v~sl~W~~~~~laVl 486 (557)
T PRK13615 415 ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGV-PTSLTTTP---LELL---ASPG-TPLDATWVDELDVATL 486 (557)
T ss_pred CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCc-ceEeeecc---EEcc---cCcC-cceeeEEcCCCEEEEE
Confidence 2357999999999988876542 356666544431110 0011 010 0000 0111 5899999999887666
Q ss_pred EEe---cCeEEEEECC
Q 015301 160 AGS---DNFIYVYDLQ 172 (409)
Q Consensus 160 ~~~---d~~i~v~d~~ 172 (409)
+.. +..+++..+.
T Consensus 487 ~~~~~~~~~v~~v~v~ 502 (557)
T PRK13615 487 TLAPDGERQVELHQVG 502 (557)
T ss_pred eccCCCCceEEEEECC
Confidence 532 3456666665
No 454
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.38 E-value=0.0079 Score=51.31 Aligned_cols=146 Identities=16% Similarity=0.130 Sum_probs=94.4
Q ss_pred EEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE-EEecCeE
Q 015301 88 ITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA-AGSDNFI 166 (409)
Q Consensus 88 v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i 166 (409)
.....|-|.+.-++.++.+..+..||-.......... +.....++|..++..+++ +-..+.+
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~-----------------tg~aldm~wDkegdvlavlAek~~pi 99 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNP-----------------TGKALDMAWDKEGDVLAVLAEKTGPI 99 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcceecccCC-----------------chhHhhhhhccccchhhhhhhcCCCe
Confidence 3445788887779989888888888865443221111 113667888887776544 4457899
Q ss_pred EEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeE
Q 015301 167 YVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYF 246 (409)
Q Consensus 167 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 246 (409)
.+||+.+....+.-.+.+..-.-+.|+ +....++.+...|.+.|++.+ ..+.....-.|...++++++.+.+. .
T Consensus 100 ylwd~n~eytqqLE~gg~~s~sll~ws-Kg~~el~ig~~~gn~viynhg----tsR~iiv~Gkh~RRgtq~av~lEd~-v 173 (615)
T KOG2247|consen 100 YLWDVNSEYTQQLESGGTSSKSLLAWS-KGTPELVIGNNAGNIVIYNHG----TSRRIIVMGKHQRRGTQIAVTLEDY-V 173 (615)
T ss_pred eechhhhhhHHHHhccCcchHHHHhhc-cCCccccccccccceEEEecc----chhhhhhhcccccceeEEEecccce-e
Confidence 999997653222111222222337788 778888889899999999953 4444444444888999999998765 4
Q ss_pred EEEeCCCcEE
Q 015301 247 ISNGKDQTTK 256 (409)
Q Consensus 247 ~~~~~dg~i~ 256 (409)
+.++.|..+.
T Consensus 174 il~dcd~~L~ 183 (615)
T KOG2247|consen 174 ILCDCDNTLS 183 (615)
T ss_pred eecCcHHHHH
Confidence 4444444433
No 455
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.37 E-value=4.4 Score=40.17 Aligned_cols=152 Identities=17% Similarity=0.243 Sum_probs=84.0
Q ss_pred EEEeCCC-CcEEEEEecCCEEEEEEcCCCccc-cccceeceeeeeeeecCCCCcceeeEEEE--------EcCCCCeEEE
Q 015301 90 DTSLSPD-QRFLVYASICAIVNIVDVGSSARE-SLANVTEIHKGLDFSADGDEDEFGIFSVK--------FSTDGQELVA 159 (409)
Q Consensus 90 ~~~~s~~-~~~l~~~~~dg~i~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~ 159 (409)
.+-+-|. ++..++ .|+.+.+|+.+++... ....... .|..+. |.|.=+++++
T Consensus 83 ~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~sh----------------tIl~V~LvkPkpgvFv~~IqhlLv 144 (1311)
T KOG1900|consen 83 DMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSH----------------TILKVGLVKPKPGVFVPEIQHLLV 144 (1311)
T ss_pred eeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhh----------------hheeeeeecCCCCcchhhhheeEE
Confidence 3444443 444444 4788999999884432 2211111 122222 3333344444
Q ss_pred EEecCeEEEEECCC----Cee-----eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCC---c-----
Q 015301 160 AGSDNFIYVYDLQA----NKC-----SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG---R----- 222 (409)
Q Consensus 160 ~~~d~~i~v~d~~~----~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~----- 222 (409)
-+.--.|.++-+.- +.. ..++......|+++... .+|+.+++|- || .+|.+--....+ +
T Consensus 145 vaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t-~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Ki 220 (1311)
T KOG1900|consen 145 VATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYT-ENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKI 220 (1311)
T ss_pred ecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEec-cCCcEEEeec-CC--CEEEEEEeccCchhhcccccc
Confidence 44445566654321 111 02233346678999966 7787777654 55 444432000000 0
Q ss_pred ------------eeeeee-ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 223 ------------ANGVLM-GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 223 ------------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
.+..+. .+.++|..+.....-..+.+-+..|.|.+||+...
T Consensus 221 clt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 221 CLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred cCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 011122 56779999999888888999999999999999873
No 456
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.30 E-value=0.17 Score=43.19 Aligned_cols=163 Identities=9% Similarity=0.122 Sum_probs=95.0
Q ss_pred ceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeE-EEEEcCCCCeEEEEEecC
Q 015301 86 WTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIF-SVKFSTDGQELVAAGSDN 164 (409)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~ 164 (409)
..|..+-..|||+.|.+-+. .++.++++.+.......-..+... +....|+ .+.....|..++++..||
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg---------~~~~~Vte~l~lL~Gg~SLLv~~~dG 290 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPG---------DSRHQVTEQLYLLSGGFSLLVVHEDG 290 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCC---------chHHHHHHHHHHHhCceeEEEEcCCC
Confidence 36777889999998887765 788899987765433322111110 0001122 122233566788888899
Q ss_pred eEEEE-ECCCC-ee----eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEE
Q 015301 165 FIYVY-DLQAN-KC----SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 238 (409)
Q Consensus 165 ~i~v~-d~~~~-~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (409)
.|.-| |...+ .+ ++.++-...++..+.-- .+.+-+++-+..|++.++... ..+.+ .+..-...+.-++
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st----~~~~l-L~~~~~~~~~~~~ 364 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYST----SEKLL-LFERAYQAPQLVA 364 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecc----cCcce-ehhhhhcCcceee
Confidence 88877 44322 21 12222223344444332 445567778888988887732 22222 2222334667789
Q ss_pred EcCCCCeEEEEeCCCcEEEeeCCCCcc
Q 015301 239 SRRDGRYFISNGKDQTTKLWDIRKMSS 265 (409)
Q Consensus 239 ~~~~~~~l~~~~~dg~i~iwd~~~~~~ 265 (409)
+||++.++++-. .|.++++.+++...
T Consensus 365 ~Sp~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 365 MSPNQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred eCcccchheeec-CCceEEEEecCCCC
Confidence 999999888653 56799998887443
No 457
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.25 E-value=0.66 Score=24.94 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=27.2
Q ss_pred CCCCEEEEEe-CCCeEEEEEccCCceEEEeccCCcceeeeEE
Q 015301 323 TAQKYIYTGS-SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCW 363 (409)
Q Consensus 323 ~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~ 363 (409)
|+++.|+++. .++.|.++|..+++.+..+... ..-..+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 4566666655 5789999999999888887652 33334444
No 458
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.19 E-value=3.8 Score=36.26 Aligned_cols=87 Identities=16% Similarity=0.184 Sum_probs=53.0
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcC---------CCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC---
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVG---------SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG--- 154 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--- 154 (409)
.|..+..++.|..++.++.+|.+.++=.+ +++....-....... .+ ......-.+..++|+|+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~--~~--ftss~~ltl~Qa~WHP~S~~D 180 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE--RF--FTSSTSLTLKQAAWHPSSILD 180 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc--ee--eccCCceeeeeccccCCccCC
Confidence 57888899999999999999976654311 111110000000000 00 011123357889999965
Q ss_pred CeEEEEEecCeEEEEECCCCeee
Q 015301 155 QELVAAGSDNFIYVYDLQANKCS 177 (409)
Q Consensus 155 ~~l~~~~~d~~i~v~d~~~~~~~ 177 (409)
..|..-+.|..|++||+.....+
T Consensus 181 ~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 181 PHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred ceEEEEecCcEEEEEecCCcchh
Confidence 66777888999999999765443
No 459
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.69 E-value=0.59 Score=40.17 Aligned_cols=166 Identities=13% Similarity=0.081 Sum_probs=92.9
Q ss_pred eecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeee-eeec-cc-ccceEE-EEEeCCCCcEEEEEecCCEEEE
Q 015301 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQK-DIET-KA-LRWTIT-DTSLSPDQRFLVYASICAIVNI 111 (409)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~-~~~~-~~-~~~~v~-~~~~s~~~~~l~~~~~dg~i~~ 111 (409)
+..-...|..+-..|||+.|..-+. ..+.|+++.+.....+ .... .+ ....|+ .+..-..|..|.+++.||.|.-
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ 294 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ 294 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence 3444567888889999998877654 5788998876522111 1111 11 001122 1222335667888888998887
Q ss_pred E-EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEE
Q 015301 112 V-DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTV 190 (409)
Q Consensus 112 w-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~ 190 (409)
| |+..+........... .+. ..++..+.-..+.+-+++-+.+|++.++.-...+.+.. ..--..+..+
T Consensus 295 WFdvr~~~~p~l~h~R~f----~l~------pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~ 363 (733)
T COG4590 295 WFDVRRDGQPHLNHIRNF----KLA------PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLV 363 (733)
T ss_pred eeeeecCCCCcceeeecc----ccC------cccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhcCccee
Confidence 7 5544433222211111 010 11233333333455677777788888877554443322 2223356778
Q ss_pred EEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
+++ |+++++++- ..|.++++.+.
T Consensus 364 ~~S-p~~~~Ll~e-~~gki~~~~l~ 386 (733)
T COG4590 364 AMS-PNQAYLLSE-DQGKIRLAQLE 386 (733)
T ss_pred eeC-cccchheee-cCCceEEEEec
Confidence 898 778877764 45778888864
No 460
>PLN02193 nitrile-specifier protein
Probab=92.63 E-value=7.6 Score=35.11 Aligned_cols=105 Identities=11% Similarity=0.073 Sum_probs=51.7
Q ss_pred CCcEEEEEecC-----CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec-----Ce
Q 015301 96 DQRFLVYASIC-----AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-----NF 165 (409)
Q Consensus 96 ~~~~l~~~~~d-----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~ 165 (409)
++++.+.|+.+ ..+..||+.+.+............ . . .-.+++. -+++.++.|+.+ ..
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~------~----R-~~h~~~~-~~~~iYv~GG~~~~~~~~~ 295 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPT------P----R-SFHSMAA-DEENVYVFGGVSATARLKT 295 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCC------C----c-cceEEEE-ECCEEEEECCCCCCCCcce
Confidence 45666777654 357788887765433322110000 0 0 0112222 256666677653 34
Q ss_pred EEEEECCCCeeeeEEc-----CCCCCeEEEEEeCCCCcEEEEeeCC----CeEEEeccc
Q 015301 166 IYVYDLQANKCSLRIP-----AHKSDVNTVCFADETGHLIFSGSDD----SLCKVWDRR 215 (409)
Q Consensus 166 i~v~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~iwd~~ 215 (409)
+..||+.+.+....-. ..... ..++.. ++++++.++.+ ..+.+||+.
T Consensus 296 ~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~ 351 (470)
T PLN02193 296 LDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEVV--QGKVWVVYGFNGCEVDDVHYYDPV 351 (470)
T ss_pred EEEEECCCCEEEeCCCCCCCCCCCCC-cEEEEE--CCcEEEEECCCCCccCceEEEECC
Confidence 6788887765432111 01111 122222 45677777655 457888864
No 461
>PLN02193 nitrile-specifier protein
Probab=92.58 E-value=7.7 Score=35.07 Aligned_cols=140 Identities=10% Similarity=0.104 Sum_probs=65.3
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCCeeeeeeeecc--cccceEEEEEeCCCCcEEEEEecCC-----EEEEEEcCCCc
Q 015301 51 DGSFFVAASQE-----SNIKVYNVDKNWKIQKDIETK--ALRWTITDTSLSPDQRFLVYASICA-----IVNIVDVGSSA 118 (409)
Q Consensus 51 ~~~~l~t~~~d-----~~i~vw~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~~w~~~~~~ 118 (409)
++++.+.|+.+ ..+.+||+.+.. ........ .....-.+++. -++++.+.|+.++ .+..||+.+.+
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~-W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNE-WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK 305 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCE-EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE
Confidence 45666777654 357788887652 22211110 00001111221 2466677776543 46677777665
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec----CeEEEEECCCCeeeeEEcC----CCCCeEEE
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD----NFIYVYDLQANKCSLRIPA----HKSDVNTV 190 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~~----~~~~v~~~ 190 (409)
........... ........+.+ +++.++.++.+ ..+.+||+.+.+....-.. ......++
T Consensus 306 W~~~~~~~~~~----------~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~ 373 (470)
T PLN02193 306 WFHCSTPGDSF----------SIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS 373 (470)
T ss_pred EEeCCCCCCCC----------CCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE
Confidence 43222110000 00001111222 56666766654 4689999988765432211 11112223
Q ss_pred EEeCCCCcEEEEeeCC
Q 015301 191 CFADETGHLIFSGSDD 206 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~d 206 (409)
+. -++++++.|+.+
T Consensus 374 ~~--~~~~iyv~GG~~ 387 (470)
T PLN02193 374 AA--VGKHIVIFGGEI 387 (470)
T ss_pred EE--ECCEEEEECCcc
Confidence 32 356777777753
No 462
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.57 E-value=0.92 Score=24.35 Aligned_cols=40 Identities=30% Similarity=0.321 Sum_probs=27.5
Q ss_pred CCCCeEEEEEe-cCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 152 TDGQELVAAGS-DNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 152 ~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
|++++|+++.. ++.|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 56776666554 789999999998888877653 33344444
No 463
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.53 E-value=5 Score=35.50 Aligned_cols=62 Identities=11% Similarity=0.133 Sum_probs=48.7
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 324 AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 324 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
...++|+++..|.|++||--.-+.-..+.+....|..+..+.+|+++++.+. ..+.+-|++-
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPI 633 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence 4579999999999999996554445566777889999999999997666654 5788888753
No 464
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=92.52 E-value=13 Score=37.38 Aligned_cols=298 Identities=14% Similarity=0.094 Sum_probs=0.0
Q ss_pred eccceEEEEeeecCCCceeecCCCCeEEEEECC---CCCEEE----EEeCCCcEEEEEcCCCeeeeeeeecccccceEEE
Q 015301 18 ADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSN---DGSFFV----AASQESNIKVYNVDKNWKIQKDIETKALRWTITD 90 (409)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~---~~~~l~----t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~ 90 (409)
.++..++....+.-......||..+|.|..-.- ..++|| +.+-||++.|=|. ...+.....+....|..
T Consensus 325 nG~n~~it~~Prvitt~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDf----NyIRRI~~dg~v~tIl~ 400 (1899)
T KOG4659|consen 325 NGGNRLITEEPRVITTAMGDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDF----NYIRRISQDGQVSTILT 400 (1899)
T ss_pred CCcceEeecCCceEEEeccCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccc----hheeeecCCCceEEEEE
Q ss_pred EEeCC--CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEE
Q 015301 91 TSLSP--DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYV 168 (409)
Q Consensus 91 ~~~s~--~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v 168 (409)
+.... ..-++|..--||++.+=|..+.+......... ... .+++=++++......=
T Consensus 401 L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~-~d~---------------------~~N~evvaG~Ge~Clp 458 (1899)
T KOG4659|consen 401 LGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEP-QDS---------------------RNNYEVVAGDGEVCLP 458 (1899)
T ss_pred ecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCc-ccc---------------------ccCeeEEeccCcCccc
Q ss_pred EECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec-------------------
Q 015301 169 YDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG------------------- 229 (409)
Q Consensus 169 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------------------- 229 (409)
.|-.-|.--....+.-.....+++. .++.+.++-+ ..|++.| ....+.++.+
T Consensus 459 ~desCGDGalA~dA~L~~PkGIa~d-k~g~lYfaD~--t~IR~iD------~~giIstlig~~~~~~~p~~C~~~~kl~~ 529 (1899)
T KOG4659|consen 459 ADESCGDGALAQDAQLIFPKGIAFD-KMGNLYFADG--TRIRVID------TTGIISTLIGTTPDQHPPRTCAQITKLVD 529 (1899)
T ss_pred cccccCcchhcccceeccCCceeEc-cCCcEEEecc--cEEEEec------cCceEEEeccCCCCccCccccccccchhh
Q ss_pred -cccceeEEEEcC--------CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccce
Q 015301 230 -HLEGITFIDSRR--------DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL 300 (409)
Q Consensus 230 -~~~~v~~~~~~~--------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (409)
|-...+.++.+| |.+.++--..++.|+|---+...|.... +
T Consensus 530 ~~leWPT~LaV~Pmdnsl~Vld~nvvlrit~~~rV~Ii~GrP~hC~~a~------------------------------~ 579 (1899)
T KOG4659|consen 530 LQLEWPTSLAVDPMDNSLLVLDTNVVLRITVVHRVRIILGRPTHCDLAN------------------------------A 579 (1899)
T ss_pred eeeecccceeecCCCCeEEEeecceEEEEccCccEEEEcCCccccccCC------------------------------C
Q ss_pred eeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeE-EEEEccCCceEEEecc--------------------------
Q 015301 301 ATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSV-YIYDLVSGAQVAKLDF-------------------------- 353 (409)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v-~i~d~~~~~~~~~~~~-------------------------- 353 (409)
..+..............+++++++|.+.++-+....| ++-.+.+...+..+.+
T Consensus 580 t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A 659 (1899)
T KOG4659|consen 580 TSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQA 659 (1899)
T ss_pred chhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhcc
Q ss_pred CCcceeeeEEecCcCeEEeecCCCeEE
Q 015301 354 HNAPVRDCCWHPIYPMLISSSWDCNIV 380 (409)
Q Consensus 354 ~~~~v~~~~~s~~~~~l~s~~~dg~i~ 380 (409)
|-..+.+++.+|||...++-..+-.|+
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN~rIr 686 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGNSRIR 686 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCchhhh
No 465
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.50 E-value=8.5 Score=35.92 Aligned_cols=70 Identities=19% Similarity=0.075 Sum_probs=45.7
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcC
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVG 115 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~ 115 (409)
...++++.-+|.|+-++.+..||+|++|+....... ++.... .+-..+.|...| |+++..|..+.-|.-+
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qs-ki~~~~---~p~~nlv~tnhg--l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQS-KICEEA---KPKENLVFTNHG--LVTATSDRRALAWKED 83 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchh-hhhhhc---CCccceeeeccc--eEEEeccchhheeecc
Confidence 355778888999999999999999999998654221 111111 134445665544 5666667776667543
No 466
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.48 E-value=3.9 Score=31.43 Aligned_cols=102 Identities=17% Similarity=0.083 Sum_probs=54.0
Q ss_pred CCCeEEEEEe--cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE-EEeeCCCeEEEecccccccCCceeeeeec
Q 015301 153 DGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI-FSGSDDSLCKVWDRRCFISKGRANGVLMG 229 (409)
Q Consensus 153 ~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 229 (409)
+|.++.+.+. ...|++||+.+++.+.+-+-....+..=-.. .-++.+ .-.-.+|.-..+|.+ ..+.+..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit-~~gd~~y~LTw~egvaf~~d~~----t~~~lg~~~- 128 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGIT-KLGDYFYQLTWKEGVAFKYDAD----TLEELGRFS- 128 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCcccccccee-eccceEEEEEeccceeEEEChH----Hhhhhcccc-
Confidence 4556666555 3579999999998776544321122111111 112223 333467888888865 333333332
Q ss_pred cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 230 HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 230 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
..+.=..++. |+..|+.+....+++.-|.++
T Consensus 129 y~GeGWgLt~--d~~~LimsdGsatL~frdP~t 159 (262)
T COG3823 129 YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKT 159 (262)
T ss_pred cCCcceeeec--CCcceEeeCCceEEEecCHHH
Confidence 1233344443 455566665555677766655
No 467
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.37 E-value=5.3 Score=32.62 Aligned_cols=189 Identities=16% Similarity=0.151 Sum_probs=104.3
Q ss_pred eeEEecCceeEeeccceE-EEEeeecCCCceeecC---CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 6 EVNYSGRGRFSAADSCHV-LSRYLPVNGPWKVDGM---NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 6 ~~~~s~dg~~~~~~~~~~-~~~~~~~~~~~~l~~h---~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
-+.+|.+-.|++..+..+ +.+...+..+ ++.+. .+--+++..+ |+++.++.-|.-+.+.|+.+.......-..
T Consensus 91 Dv~vse~yvyvad~ssGL~IvDIS~P~sP-~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP~lagry 167 (370)
T COG5276 91 DVRVSEEYVYVADWSSGLRIVDISTPDSP-TLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQLAGRY 167 (370)
T ss_pred eeEecccEEEEEcCCCceEEEeccCCCCc-ceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCCCCCceeeeee
Confidence 355666666666644433 3333333333 33322 2344555554 788888875555888898876443332222
Q ss_pred ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE
Q 015301 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (409)
....+.-..++.| |++-..+..|+-+.+-|+............... ..+.++..+++-.+++..
T Consensus 168 a~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g-------------~g~~sv~vsdnr~y~vvy- 231 (370)
T COG5276 168 ALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTG-------------PGTYSVSVSDNRAYLVVY- 231 (370)
T ss_pred ccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecC-------------CceEEEEecCCeeEEEEc-
Confidence 2222333455665 666777778999999999877654333322211 147788888776666655
Q ss_pred ecCeEEEEECCCCeeeeEEcC-CCCCeEEE-EEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 162 SDNFIYVYDLQANKCSLRIPA-HKSDVNTV-CFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 162 ~d~~i~v~d~~~~~~~~~~~~-~~~~v~~~-~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
+.-+.+-|..+.+....+-. .+..+.++ .+. -.+++......+.-+.+-|+.
T Consensus 232 -~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~-Vs~~~~Yvadga~gl~~idis 285 (370)
T COG5276 232 -DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVP-VSGEYAYVADGAKGLPIIDIS 285 (370)
T ss_pred -ccceEEEecCCCCCceEeeccccCCccccccee-cccceeeeeccccCceeEecc
Confidence 34577788776654333311 12222222 121 346666666666667777754
No 468
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.21 E-value=4.4 Score=31.42 Aligned_cols=153 Identities=12% Similarity=0.058 Sum_probs=76.2
Q ss_pred CEEEEEeCCCcEEEEEcCCC-eeeeeeeecccccceEEEEEeCCCCcEEEEEecC---C---EEEEE-EcCCC--ccccc
Q 015301 53 SFFVAASQESNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---A---IVNIV-DVGSS--ARESL 122 (409)
Q Consensus 53 ~~l~t~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g---~i~~w-~~~~~--~~~~~ 122 (409)
+.|+.+...+.|.+|++... ......+.. -+.|..+.++..|++|++--.+ . .+|+| +++.. +....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T---v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST---VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc---hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 44444455678999999833 122222222 2479999999999999986422 2 56664 23222 11000
Q ss_pred c-ceec-----e---eeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCee-ee-----EE-----cC
Q 015301 123 A-NVTE-----I---HKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC-SL-----RI-----PA 182 (409)
Q Consensus 123 ~-~~~~-----~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~-----~~-----~~ 182 (409)
. .+.. . .....+.--.-.-..++.+++..|-...|++|+ ++.+.+|.+..... .. -+ ..
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~ 184 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDH 184 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhhe
Confidence 0 0000 0 000000000001233577888888433455555 46788888764432 11 11 11
Q ss_pred CC-CCeEEEEEeCCCCcEEEEeeCCCeEEEec
Q 015301 183 HK-SDVNTVCFADETGHLIFSGSDDSLCKVWD 213 (409)
Q Consensus 183 ~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 213 (409)
|. -.+..+++. ++++|..+ +-.+++..
T Consensus 185 ~~~~~p~~v~ic---~~yiA~~s-~~ev~Vlk 212 (215)
T PF14761_consen 185 IDNFKPTQVAIC---EGYIAVMS-DLEVLVLK 212 (215)
T ss_pred ecCceEEEEEEE---eeEEEEec-CCEEEEEE
Confidence 22 235666666 55666654 44566554
No 469
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.11 E-value=14 Score=36.91 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=29.4
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 015301 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKN 72 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~ 72 (409)
|.......++|+|...++|.+...|.|++|-...-
T Consensus 33 G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 33 GFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred CCCCCCcceeeccccceEEEEEecccEEEecccce
Confidence 44456788999999999999999999999986543
No 470
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=91.57 E-value=0.94 Score=23.93 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=20.9
Q ss_pred eecCCCCeEEEEECCCCCEEEEEeC-C--CcEEEE
Q 015301 36 VDGMNSRVYTSQFSNDGSFFVAASQ-E--SNIKVY 67 (409)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~-d--~~i~vw 67 (409)
+....+.-....|||||+.|+-++. + |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445567888999999998876553 4 555555
No 471
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.33 E-value=8.3 Score=32.79 Aligned_cols=61 Identities=21% Similarity=0.410 Sum_probs=33.2
Q ss_pred CCCeEEEEEe-----cCeEEEEECCCCeeeeE--EcCCCCCeEEEEEeCCCCcEEEEeeCCCe----EEEeccc
Q 015301 153 DGQELVAAGS-----DNFIYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDDSL----CKVWDRR 215 (409)
Q Consensus 153 ~~~~l~~~~~-----d~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~----i~iwd~~ 215 (409)
+++..+.|+. ...+..||+.+.+.... +... ......+.. .++.+.+.|+.++. +..||+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~~yd~~ 194 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE-PRVQPVCVK-LQNELYVFGGGSNIAYTDGYKYSPK 194 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-CCCcceEEE-ECCEEEEEcCCCCccccceEEEecC
Confidence 5666666664 24688899887654332 2211 111222222 35677777876543 4577764
No 472
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.86 E-value=9.9 Score=32.81 Aligned_cols=201 Identities=15% Similarity=0.181 Sum_probs=101.8
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccc-cceEEEEEeCCCCcE--EEEEecC----CEEEEEEcCCCccccc
Q 015301 50 NDGSFFVAASQESNIKVYNVDKNWKIQKDIETKAL-RWTITDTSLSPDQRF--LVYASIC----AIVNIVDVGSSARESL 122 (409)
Q Consensus 50 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~--l~~~~~d----g~i~~w~~~~~~~~~~ 122 (409)
|...+++....++-+.+||++.. .++........ -.-...+.+ .++. |++++.. ..|++|.+...... +
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk-~lq~~~~Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGK-ELQSLPVGRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-L 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE-SS-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-E
T ss_pred cccceEEEEeCCCCEEEEcCCCc-EEEeecCCCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCc-c
Confidence 45567888888888999999876 33332111100 011122233 2332 4555432 47999988642111 1
Q ss_pred cceeceeeeeeeecCCCCcceeeEEEEE--cC-CCC-eEEEEEecCeEEEEECC---CC----eeeeEEcCCCCCeEEEE
Q 015301 123 ANVTEIHKGLDFSADGDEDEFGIFSVKF--ST-DGQ-ELVAAGSDNFIYVYDLQ---AN----KCSLRIPAHKSDVNTVC 191 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~~-~l~~~~~d~~i~v~d~~---~~----~~~~~~~~~~~~v~~~~ 191 (409)
......... +.. ....++.+|+ ++ +|. +.++...+|.+..|.+. .+ +.++.+.. ...+..|.
T Consensus 142 ~~v~~~~~p--~~~----~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCV 214 (381)
T PF02333_consen 142 TDVTDPAAP--IAT----DLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCV 214 (381)
T ss_dssp EE-CBTTC---EE-----SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEE
T ss_pred eEcCCCCcc--ccc----ccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEE
Confidence 111100000 000 0113666666 33 454 55566678888877663 33 34566653 45788999
Q ss_pred EeCCCCcEEEEeeCCCeEEEecccccccC-Cceeeeee--ccccceeEEEEc--CCCC-eEEEEe-CCCcEEEeeCCC
Q 015301 192 FADETGHLIFSGSDDSLCKVWDRRCFISK-GRANGVLM--GHLEGITFIDSR--RDGR-YFISNG-KDQTTKLWDIRK 262 (409)
Q Consensus 192 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~--~~~~~v~~~~~~--~~~~-~l~~~~-~dg~i~iwd~~~ 262 (409)
.. .....|+.+-++.-|.-|+....... ...+.... .....|..|++- ++++ +|++++ .+++..+|+.+.
T Consensus 215 VD-De~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 215 VD-DETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EE-TTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred Ee-cccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 98 67778888988877777775421111 12221221 234567777763 3333 555544 477899999775
No 473
>PLN02153 epithiospecifier protein
Probab=90.81 E-value=9.8 Score=32.68 Aligned_cols=68 Identities=9% Similarity=0.159 Sum_probs=34.0
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCCeeeeeeeecc----cccceEEEEEeCCCCcEEEEEecC-----------CEEE
Q 015301 51 DGSFFVAASQE-----SNIKVYNVDKNWKIQKDIETK----ALRWTITDTSLSPDQRFLVYASIC-----------AIVN 110 (409)
Q Consensus 51 ~~~~l~t~~~d-----~~i~vw~~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~ 110 (409)
++++++.|+.+ ..+.+||..+.. ........ .....-.+++. -++++++.|+.+ ..+.
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~-W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~ 162 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNE-WTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIE 162 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCE-EEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEE
Confidence 45677777753 347788887652 22111110 00001112222 356677777643 2467
Q ss_pred EEEcCCCccc
Q 015301 111 IVDVGSSARE 120 (409)
Q Consensus 111 ~w~~~~~~~~ 120 (409)
+||..+.+-.
T Consensus 163 ~yd~~~~~W~ 172 (341)
T PLN02153 163 AYNIADGKWV 172 (341)
T ss_pred EEECCCCeEe
Confidence 7888776543
No 474
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=90.75 E-value=8.4 Score=31.80 Aligned_cols=118 Identities=15% Similarity=0.211 Sum_probs=64.0
Q ss_pred CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe------cCCEEEEEEcCCCccccccceeceeeeeeee
Q 015301 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS------ICAIVNIVDVGSSARESLANVTEIHKGLDFS 135 (409)
Q Consensus 62 ~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 135 (409)
..|++||..+. +.... ..+..+.|+++.|..+.+.++.|. ....+..||+.+...........
T Consensus 16 ~~lC~yd~~~~-qW~~~--g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s-------- 84 (281)
T PF12768_consen 16 PGLCLYDTDNS-QWSSP--GNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSS-------- 84 (281)
T ss_pred CEEEEEECCCC-EeecC--CCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCccc--------
Confidence 34999998876 22222 222556899999987777777664 34578889988776433322110
Q ss_pred cCCCCcceeeEEEEEcC-CCCeEE-EEE-e--cCeEEEEECCCCeeeeE-EcCCCCCeEEEEEe
Q 015301 136 ADGDEDEFGIFSVKFST-DGQELV-AAG-S--DNFIYVYDLQANKCSLR-IPAHKSDVNTVCFA 193 (409)
Q Consensus 136 ~~~~~~~~~v~~~~~~~-~~~~l~-~~~-~--d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~ 193 (409)
..-.++|..+.+.. ++..+. .|. . +..|..||-.+...+.. .......|..+.+.
T Consensus 85 ---~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~ 145 (281)
T PF12768_consen 85 ---NSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL 145 (281)
T ss_pred ---ccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence 01123577776643 333343 333 2 33466666544443333 22223455555554
No 475
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.37 E-value=18 Score=35.12 Aligned_cols=115 Identities=15% Similarity=0.147 Sum_probs=68.0
Q ss_pred eeeEEEEEcC-CCCeEEEEEecCeEEEEECCCCee----eeEE-cCCC----------CCeEEEEEeCCCCcEEEEeeCC
Q 015301 143 FGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKC----SLRI-PAHK----------SDVNTVCFADETGHLIFSGSDD 206 (409)
Q Consensus 143 ~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~----~~~~-~~~~----------~~v~~~~~~~~~~~~l~~~~~d 206 (409)
.+...++|+| +...||+....|...||++..... ...+ ..+. +.-..+.|. .+.+.|++++.
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~-~~~~~lLv~~r- 223 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWV-SDSNRLLVCNR- 223 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEec-CCCCEEEEEcC-
Confidence 3678899998 556899999999999999921111 1111 1111 222367787 56666666554
Q ss_pred CeEEEecccccccCCceeeeeeccccceeEEEEcCC--CCeEEEEeCCCcEEEeeCCCC
Q 015301 207 SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD--GRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 207 g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~ 263 (409)
..+.++|++.. ..............|..+.-+|. +..++. ....|...++...
T Consensus 224 ~~l~~~d~~~~--~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 224 SKLMLIDFESN--WQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKSS 278 (765)
T ss_pred CceEEEECCCC--CccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccCC
Confidence 56888887521 11111222334567888887776 222322 3357888887763
No 476
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.26 E-value=3.5 Score=31.19 Aligned_cols=31 Identities=6% Similarity=-0.014 Sum_probs=25.1
Q ss_pred cceeEEEEcCCC------CeEEEEeCCCcEEEeeCCC
Q 015301 232 EGITFIDSRRDG------RYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 232 ~~v~~~~~~~~~------~~l~~~~~dg~i~iwd~~~ 262 (409)
..+..++|||.| -+|++...++.|.+|.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999944 3688888999999998654
No 477
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.20 E-value=1.6 Score=23.03 Aligned_cols=31 Identities=6% Similarity=0.041 Sum_probs=19.2
Q ss_pred ccCCcceeeeEEecCcCeEEee-cCC--CeEEEE
Q 015301 352 DFHNAPVRDCCWHPIYPMLISS-SWD--CNIVRW 382 (409)
Q Consensus 352 ~~~~~~v~~~~~s~~~~~l~s~-~~d--g~i~iw 382 (409)
......-....|||||+.|+-+ ..+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3345566788999999966544 445 665555
No 478
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.12 E-value=19 Score=34.98 Aligned_cols=173 Identities=12% Similarity=0.113 Sum_probs=99.0
Q ss_pred cCCCCeEEEEEC---C----CCCEEEEEeCCCcEEEEEcCCC---------------eeeeeeeecccccceEEEEEeCC
Q 015301 38 GMNSRVYTSQFS---N----DGSFFVAASQESNIKVYNVDKN---------------WKIQKDIETKALRWTITDTSLSP 95 (409)
Q Consensus 38 ~h~~~v~~~~~s---~----~~~~l~t~~~d~~i~vw~~~~~---------------~~~~~~~~~~~~~~~v~~~~~s~ 95 (409)
.-..+|..|.|+ . ..++|++=. ...+.|+...-. ..+..+........+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 567889999998 2 224665543 455777772111 01111111111123678899998
Q ss_pred -CCcEEEEEecCCEEEEEEcCCCccccc--cceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECC
Q 015301 96 -DQRFLVYASICAIVNIVDVGSSARESL--ANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ 172 (409)
Q Consensus 96 -~~~~l~~~~~dg~i~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 172 (409)
+.+.||+....|.-.||++........ ........+. +..+ ......-..+.|.++.+.|++++. ..+.++|++
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gs-i~~d-~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~ 232 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGS-IIFD-PEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFE 232 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCcc-ccCC-CcccCcceeeEecCCCCEEEEEcC-CceEEEECC
Confidence 457899999999999999932221111 1111111110 0011 111234568889888888888764 568999998
Q ss_pred CCeeee--EEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 173 ANKCSL--RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 173 ~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
+..... ........|.++.-+|.+...++.-+ ...|...++.
T Consensus 233 ~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~ 276 (765)
T PF10214_consen 233 SNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVK 276 (765)
T ss_pred CCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEcc
Confidence 876533 12334577889988855444444433 2567777765
No 479
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=90.11 E-value=11 Score=32.34 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=21.0
Q ss_pred CeEEEEECCCCeeeeE--EcCCCCCeEEEEEeCCCCcEEEEeeCC
Q 015301 164 NFIYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDD 206 (409)
Q Consensus 164 ~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d 206 (409)
..+.+||..+.+.... +......-.+++. .++++++.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~--~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVH--KGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEE--ECCEEEEEeeee
Confidence 4688899877654332 2211111223333 356777777653
No 480
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=90.11 E-value=3.3 Score=33.16 Aligned_cols=136 Identities=15% Similarity=0.159 Sum_probs=70.6
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe---cCeEEEEECCC----Ceee---e
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDLQA----NKCS---L 178 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~----~~~~---~ 178 (409)
-.+||+.+++........+. -+.+-.+.+||++|.+|+. ...+++++... .... .
T Consensus 48 s~~yD~~tn~~rpl~v~td~---------------FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~ 112 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDT---------------FCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPN 112 (243)
T ss_pred EEEEecCCCcEEeccCCCCC---------------cccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcc
Confidence 34789888776544332221 1444567889999998876 23577777644 1111 0
Q ss_pred EEcCCCCCeEEEEEeCCCCcEEEEeeCCC-eEEEecccccccCCceeeeeec-----cccceeEEEEcCCCCeEEEEeCC
Q 015301 179 RIPAHKSDVNTVCFADETGHLIFSGSDDS-LCKVWDRRCFISKGRANGVLMG-----HLEGITFIDSRRDGRYFISNGKD 252 (409)
Q Consensus 179 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d 252 (409)
.+.... .=...... ++|+.|+.|+.+. +..+|.-+...........+.. ...---.+...|+|++++.+..+
T Consensus 113 ~m~~~R-WYpT~~~L-~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 113 DMQSGR-WYPTATTL-PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred cccCCC-ccccceEC-CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC
Confidence 111111 11222333 6889998888764 3445553211001111111110 11112245568999999888765
Q ss_pred CcEEEeeCCCC
Q 015301 253 QTTKLWDIRKM 263 (409)
Q Consensus 253 g~i~iwd~~~~ 263 (409)
. .|||..+.
T Consensus 191 s--~i~d~~~n 199 (243)
T PF07250_consen 191 S--IIYDYKTN 199 (243)
T ss_pred c--EEEeCCCC
Confidence 4 55677664
No 481
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=90.09 E-value=8.6 Score=30.88 Aligned_cols=125 Identities=15% Similarity=0.202 Sum_probs=63.9
Q ss_pred EECCCCCEEEEEeC-C--CcEEEEEcCC---Ceeeeeee-ecccccceEEEEEeCCCCcEEEEEecCCE-EEEEEcCCCc
Q 015301 47 QFSNDGSFFVAASQ-E--SNIKVYNVDK---NWKIQKDI-ETKALRWTITDTSLSPDQRFLVYASICAI-VNIVDVGSSA 118 (409)
Q Consensus 47 ~~s~~~~~l~t~~~-d--~~i~vw~~~~---~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~~w~~~~~~ 118 (409)
+|-|||++|.+|+. + ..+++++... ........ .....+ .--...-.|||+.|+.|+.... ..+|.-....
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~R-WYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~ 151 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGR-WYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPG 151 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCC-ccccceECCCCCEEEEeCcCCCcccccCCccCC
Confidence 46789999999875 2 4588888654 11111110 111122 2333445679999999987632 2333321110
Q ss_pred cccccceeceeeeeeeecCC--CCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcC
Q 015301 119 RESLANVTEIHKGLDFSADG--DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA 182 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 182 (409)
.. ... ..+.... .....---.+...|+|+.|+.+..+ -.|||..+.+.+..++.
T Consensus 152 ~~-~~~-------~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 152 PG-PVT-------LPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLPD 207 (243)
T ss_pred CC-cee-------eecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCCC
Confidence 00 000 0000000 0001112245668999999888754 45678888877666653
No 482
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.04 E-value=1.6 Score=40.33 Aligned_cols=86 Identities=17% Similarity=0.146 Sum_probs=44.7
Q ss_pred CCCcEEEEEecCCEEEEEEcCCCc----cccccceece-----eeee-eee-cCCCCcceeeEEEEEcC----CCCeEEE
Q 015301 95 PDQRFLVYASICAIVNIVDVGSSA----RESLANVTEI-----HKGL-DFS-ADGDEDEFGIFSVKFST----DGQELVA 159 (409)
Q Consensus 95 ~~~~~l~~~~~dg~i~~w~~~~~~----~~~~~~~~~~-----~~~~-~~~-~~~~~~~~~v~~~~~~~----~~~~l~~ 159 (409)
++...++++..||.+......... .......... ..++ ... .........+..++++. +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 466788888899988888776511 1000000000 0000 000 00011123355555555 6778999
Q ss_pred EEecCeEEEEECCCCeeeeEE
Q 015301 160 AGSDNFIYVYDLQANKCSLRI 180 (409)
Q Consensus 160 ~~~d~~i~v~d~~~~~~~~~~ 180 (409)
.+.|+.+++||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999986554
No 483
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.97 E-value=13 Score=32.58 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=26.4
Q ss_pred CCCeEEEEEec-----------CeEEEEECCCCeeeeEEcCCCCCe--EEEEEeCCCCcEEEEeeCC
Q 015301 153 DGQELVAAGSD-----------NFIYVYDLQANKCSLRIPAHKSDV--NTVCFADETGHLIFSGSDD 206 (409)
Q Consensus 153 ~~~~l~~~~~d-----------~~i~v~d~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~d 206 (409)
++...+.|+.. ..+..||..+.+....-....... .+.... .++.+.+.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~-~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSL-HNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEe-eCCEEEEECCCC
Confidence 56666666643 247788887765433211001111 122221 256777777754
No 484
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.86 E-value=2 Score=39.72 Aligned_cols=71 Identities=11% Similarity=0.079 Sum_probs=42.6
Q ss_pred CCCCEEEEEeCCCcEEEEEcCC----Ceeeeeeee-c------------------ccccceEEEEEeCC----CCcEEEE
Q 015301 50 NDGSFFVAASQESNIKVYNVDK----NWKIQKDIE-T------------------KALRWTITDTSLSP----DQRFLVY 102 (409)
Q Consensus 50 ~~~~~l~t~~~d~~i~vw~~~~----~~~~~~~~~-~------------------~~~~~~v~~~~~s~----~~~~l~~ 102 (409)
++...++.+..||.+....... +........ . ......+..++.++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667788888899888877664 111111100 0 01123456666666 7789999
Q ss_pred EecCCEEEEEEcCCCccc
Q 015301 103 ASICAIVNIVDVGSSARE 120 (409)
Q Consensus 103 ~~~dg~i~~w~~~~~~~~ 120 (409)
.+.|+.+|+||+.++++.
T Consensus 236 l~~D~~LRiW~l~t~~~~ 253 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCL 253 (547)
T ss_dssp EETTSEEEEEETTTTCEE
T ss_pred EeCCCeEEEEECCCCeEE
Confidence 999999999999999873
No 485
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=89.13 E-value=13 Score=31.62 Aligned_cols=105 Identities=12% Similarity=0.192 Sum_probs=49.0
Q ss_pred CCCeEEEEEec-----CeEEEEECCCCeee---eEEcCCCCC--eEEEEEeCCCCcEEEEeeC-----CCeEEEeccccc
Q 015301 153 DGQELVAAGSD-----NFIYVYDLQANKCS---LRIPAHKSD--VNTVCFADETGHLIFSGSD-----DSLCKVWDRRCF 217 (409)
Q Consensus 153 ~~~~l~~~~~d-----~~i~v~d~~~~~~~---~~~~~~~~~--v~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~ 217 (409)
++..++.|+.+ ..+..+|+.+.+.. ..+..-..+ -.+++.. ++.+.+.|+. ...+..||+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~-- 147 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLE-- 147 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCC--
Confidence 55666777653 35777787665531 122111111 1233333 4667777764 2357788865
Q ss_pred ccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCc----EEEeeCCC
Q 015301 218 ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT----TKLWDIRK 262 (409)
Q Consensus 218 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----i~iwd~~~ 262 (409)
......+..+... ......+...++++.+.|+.++. +..||.++
T Consensus 148 ~~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 148 TQEWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CCCeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 1222222222111 11111222335667777776542 34566554
No 486
>PRK13684 Ycf48-like protein; Provisional
Probab=89.06 E-value=14 Score=31.71 Aligned_cols=105 Identities=13% Similarity=0.117 Sum_probs=57.2
Q ss_pred eeEEEEEcCCCCeEEEEEecCeEEEE-ECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCc
Q 015301 144 GIFSVKFSTDGQELVAAGSDNFIYVY-DLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR 222 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d~~i~v~-d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 222 (409)
.+..+.+.|++.+++++ ..|.+..- |-...........-...+.++.+. +++..++++ ..|.+.+=... .+.
T Consensus 174 ~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~-~~g~~~~vg-~~G~~~~~s~d----~G~ 246 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQ-PDGNLWMLA-RGGQIRFNDPD----DLE 246 (334)
T ss_pred eEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEc-CCCCEEEEe-cCCEEEEccCC----CCC
Confidence 58889999988766555 45655432 222111222222345678899998 667766654 56776542211 222
Q ss_pred eeeeeec----cccceeEEEEcCCCCeEEEEeCCCcEE
Q 015301 223 ANGVLMG----HLEGITFIDSRRDGRYFISNGKDQTTK 256 (409)
Q Consensus 223 ~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~ 256 (409)
.-..... ....+..+.+.+++..++ ++.+|.+.
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~ 283 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL 283 (334)
T ss_pred ccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE
Confidence 1111111 123567888988776544 55666544
No 487
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=89.03 E-value=16 Score=32.53 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=25.2
Q ss_pred cceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 356 APVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 356 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
..|..+...+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488999998889999999999999999986
No 488
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=89.02 E-value=19 Score=33.36 Aligned_cols=203 Identities=11% Similarity=0.109 Sum_probs=104.7
Q ss_pred CeEEEEECCCCCEEEEE-----eCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCE---EEEEE
Q 015301 42 RVYTSQFSNDGSFFVAA-----SQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAI---VNIVD 113 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~-----~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---i~~w~ 113 (409)
.+-.++.|||++++|-+ +..-++++-|+.+++.+..... +....++|.+|++.|.....|.. =++|-
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~-----~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~ 204 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT-----NTSGSFAWAADGKTLFYTRLDENHRPDKVWR 204 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc-----ccccceEEecCCCeEEEEEEcCCCCcceEEE
Confidence 45677889999998854 3345699999998855544322 13567899999988877654432 22332
Q ss_pred --cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe---cCeEEEEECCCCeeeeE--EcCCCCC
Q 015301 114 --VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDLQANKCSLR--IPAHKSD 186 (409)
Q Consensus 114 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~--~~~~~~~ 186 (409)
+.+........ +.... .. --.++.-+.+.++|+.... .+.+++.+......... .+...+-
T Consensus 205 h~~gt~~~~d~lv---------yeE~d--~~-f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~ 272 (682)
T COG1770 205 HRLGTPGSSDELV---------YEEKD--DR-FFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGV 272 (682)
T ss_pred EecCCCCCcceEE---------EEcCC--Cc-EEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCc
Confidence 22211111100 00000 00 1233333445666665543 35677887765543222 2211111
Q ss_pred eEEEEEeCCCCcEEEEeeCCC-eEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC---cEEEeeCCC
Q 015301 187 VNTVCFADETGHLIFSGSDDS-LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ---TTKLWDIRK 262 (409)
Q Consensus 187 v~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~ 262 (409)
=..+.- ....+++-...+| ..++..... ......-..+..|...+.--.++--..+|+....++ .|++++..+
T Consensus 273 eY~~eh--~~d~f~i~sN~~gknf~l~~ap~-~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~ 349 (682)
T COG1770 273 EYSVEH--GGDRFYILSNADGKNFKLVRAPV-SADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKT 349 (682)
T ss_pred EEeeee--cCcEEEEEecCCCcceEEEEccC-CCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCC
Confidence 111221 2333444444555 455555432 123333445566777666666665566666655433 677777765
Q ss_pred Cc
Q 015301 263 MS 264 (409)
Q Consensus 263 ~~ 264 (409)
++
T Consensus 350 ~~ 351 (682)
T COG1770 350 GE 351 (682)
T ss_pred Cc
Confidence 44
No 489
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=88.90 E-value=18 Score=32.86 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=39.0
Q ss_pred ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccc---ceeEEE
Q 015301 162 SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE---GITFID 238 (409)
Q Consensus 162 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~v~~~~ 238 (409)
..+...++|. +|..+..+.........+... +++.+++... ..+..+|+ .++.........+ .-..+.
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l-~nG~ll~~~~--~~~~e~D~-----~G~v~~~~~l~~~~~~~HHD~~ 196 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQL-PNGNLLIGSG--NRLYEIDL-----LGKVIWEYDLPGGYYDFHHDID 196 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE--TTS-EEEEEB--TEEEEE-T-----T--EEEEEE--TTEE-B-S-EE
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEc-CCCCEEEecC--CceEEEcC-----CCCEEEeeecCCcccccccccE
Confidence 4566777775 466555553222222125566 7888776655 77888886 3444433332221 135577
Q ss_pred EcCCCCeEEEEe
Q 015301 239 SRRDGRYFISNG 250 (409)
Q Consensus 239 ~~~~~~~l~~~~ 250 (409)
..|+|++|+.+.
T Consensus 197 ~l~nGn~L~l~~ 208 (477)
T PF05935_consen 197 ELPNGNLLILAS 208 (477)
T ss_dssp E-TTS-EEEEEE
T ss_pred ECCCCCEEEEEe
Confidence 788999888776
No 490
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.40 E-value=15 Score=31.35 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=39.9
Q ss_pred EEEeeeecCCCCEEEEEeCC-----C-----------eEEEEEccC-CceE----EEecc-----CCcceeeeEEecCcC
Q 015301 315 CYFSPEYSTAQKYIYTGSSD-----N-----------SVYIYDLVS-GAQV----AKLDF-----HNAPVRDCCWHPIYP 368 (409)
Q Consensus 315 ~~~~~~~s~~~~~l~~~~~d-----g-----------~v~i~d~~~-~~~~----~~~~~-----~~~~v~~~~~s~~~~ 368 (409)
....++++|+|+.|+++.+. + .|..||..+ ++.. ..+.. ....|+.+.+-++++
T Consensus 148 G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~ 227 (326)
T PF13449_consen 148 GFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR 227 (326)
T ss_pred CeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc
Confidence 34566788899866665432 2 234445544 3222 22222 346789999999999
Q ss_pred eEEee-----cCCCeEEEEecC
Q 015301 369 MLISS-----SWDCNIVRWEIP 385 (409)
Q Consensus 369 ~l~s~-----~~dg~i~iw~~~ 385 (409)
+|+-= +....++++.+.
T Consensus 228 lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 228 LLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred EEEEEccCCCCccceEEEEEEE
Confidence 66642 123445555443
No 491
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=88.38 E-value=22 Score=33.27 Aligned_cols=156 Identities=16% Similarity=0.204 Sum_probs=0.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEc---------CCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec-CC--
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNV---------DKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI-CA-- 107 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~---------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg-- 107 (409)
.+.|-.+.|.++++.+++.-.+|.|.+||. .............. -|..........++++.+. ++
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~---fv~~~~~~~~~~~ll~v~~~~~~k 205 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSK---FVNDFELENGKDLLLTVSQLSNSK 205 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhh---hhcccccccCCceEEEEEEcCCCc
Q ss_pred -EEEEEEc--CCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCC
Q 015301 108 -IVNIVDV--GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHK 184 (409)
Q Consensus 108 -~i~~w~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 184 (409)
..+++.+ ................. .....|+-+...|..- .++.|.+|++.+.+...++. -.
T Consensus 206 ~~ykL~~l~~~~~~~~El~s~~~e~~~-------------~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~-l~ 270 (670)
T PF10395_consen 206 LSYKLISLSNESSSIFELSSTILENFG-------------LEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTIS-LP 270 (670)
T ss_pred EEEEEEEeccCCcceEEeehheeccCC-------------cccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEE-ec
Q ss_pred CCeEEE-----EEeCCCCcEEEEeeCCCeEEEecc
Q 015301 185 SDVNTV-----CFADETGHLIFSGSDDSLCKVWDR 214 (409)
Q Consensus 185 ~~v~~~-----~~~~~~~~~l~~~~~dg~i~iwd~ 214 (409)
.-|..- .+.|+..++++.+. +..|++.|+
T Consensus 271 ~ii~~~~~~~vSl~~~s~nRvLLs~-~nkIyLld~ 304 (670)
T PF10395_consen 271 SIIDKESDDLVSLKPPSPNRVLLSV-NNKIYLLDL 304 (670)
T ss_pred hhhccccccceEeecCCCCeEEEEc-CCEEEEEee
No 492
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=88.32 E-value=1.7 Score=21.71 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=21.4
Q ss_pred CEEEEEeCCCeEEEEEccCCceEEEe
Q 015301 326 KYIYTGSSDNSVYIYDLVSGAQVAKL 351 (409)
Q Consensus 326 ~~l~~~~~dg~v~i~d~~~~~~~~~~ 351 (409)
..+++++.+|.++.+|..+|+.+.++
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36778889999999999999877553
No 493
>PLN02153 epithiospecifier protein
Probab=88.11 E-value=16 Score=31.38 Aligned_cols=67 Identities=4% Similarity=0.080 Sum_probs=33.6
Q ss_pred CCCEEEEEeCC-------CcEEEEEcCCCeeeeeeeeccc-cc---ceEEEEEeCCCCcEEEEEecC-----CEEEEEEc
Q 015301 51 DGSFFVAASQE-------SNIKVYNVDKNWKIQKDIETKA-LR---WTITDTSLSPDQRFLVYASIC-----AIVNIVDV 114 (409)
Q Consensus 51 ~~~~l~t~~~d-------~~i~vw~~~~~~~~~~~~~~~~-~~---~~v~~~~~s~~~~~l~~~~~d-----g~i~~w~~ 114 (409)
++++++.|+.+ ..+.+||..+.. ......... .. .....+.+ ++++++.|+.+ ..+.+||.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHT-WSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCE-EEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEEC
Confidence 45666777653 257788887652 221111100 00 01122222 46677777643 24777888
Q ss_pred CCCccc
Q 015301 115 GSSARE 120 (409)
Q Consensus 115 ~~~~~~ 120 (409)
.+.+-.
T Consensus 109 ~t~~W~ 114 (341)
T PLN02153 109 VKNEWT 114 (341)
T ss_pred CCCEEE
Confidence 766543
No 494
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=87.40 E-value=18 Score=31.27 Aligned_cols=152 Identities=11% Similarity=0.112 Sum_probs=82.5
Q ss_pred CCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCe--EEEEEe-c---CeEEE
Q 015301 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQE--LVAAGS-D---NFIYV 168 (409)
Q Consensus 95 ~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~-d---~~i~v 168 (409)
|...+++....++-+.+||+..........- ....+. -...+.+ +|+. |++++. + ..|++
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~~G--r~NNVD----------vrygf~l--~g~~vDlavas~R~~g~n~l~~ 131 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKELQSLPVG--RPNNVD----------VRYGFPL--NGKTVDLAVASDRSDGRNSLRL 131 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EEEEE-SS---EEEEE----------EEEEEEE--TTEEEEEEEEEE-CCCT-EEEE
T ss_pred cccceEEEEeCCCCEEEEcCCCcEEEeecCC--Ccceee----------eecceec--CCceEEEEEEecCcCCCCeEEE
Confidence 3456777778889999999987765433211 111110 1222333 3433 445543 2 46888
Q ss_pred EECC--CCeeeeEEcC-------CCCCeEEEEEe--CCCCc-EEEEeeCCCeEEEeccccccc---CCceeeeeeccccc
Q 015301 169 YDLQ--ANKCSLRIPA-------HKSDVNTVCFA--DETGH-LIFSGSDDSLCKVWDRRCFIS---KGRANGVLMGHLEG 233 (409)
Q Consensus 169 ~d~~--~~~~~~~~~~-------~~~~v~~~~~~--~~~~~-~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~ 233 (409)
|.+. ++. +..+.. ....+..+|+. |.++. +++....+|.+..|.+..... ..+.++.+.. ...
T Consensus 132 f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ 209 (381)
T PF02333_consen 132 FRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQ 209 (381)
T ss_dssp EEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-
T ss_pred EEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCc
Confidence 8775 343 332221 12345666663 33444 566677889998888752111 1234444443 347
Q ss_pred eeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 234 ITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 234 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
+..+........|..+-++.-|.-|+.+.
T Consensus 210 ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep 238 (381)
T PF02333_consen 210 PEGCVVDDETGRLYVGEEDVGIWRYDAEP 238 (381)
T ss_dssp EEEEEEETTTTEEEEEETTTEEEEEESSC
T ss_pred ceEEEEecccCCEEEecCccEEEEEecCC
Confidence 88888888778898888887676666653
No 495
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=87.03 E-value=17 Score=30.56 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=40.2
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC-eeeeeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEEEcCCC
Q 015301 51 DGSFFVAASQESNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVDVGSS 117 (409)
Q Consensus 51 ~~~~l~t~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w~~~~~ 117 (409)
++++|+.|.++| +.+.++... ....+.. +...|+++...+..+.|++-+ ....++++++..-
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~----~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L 75 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI----GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSAL 75 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEec----CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHh
Confidence 346899999999 555556542 2233322 233699999988777666554 4445999998543
No 496
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=86.88 E-value=16 Score=30.16 Aligned_cols=92 Identities=17% Similarity=0.293 Sum_probs=56.3
Q ss_pred CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE------ecCeEEEEECCCCeeeeE
Q 015301 106 CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG------SDNFIYVYDLQANKCSLR 179 (409)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~v~d~~~~~~~~~ 179 (409)
-..|.+||..+.+...... +-.+.|+++.|..+.+.++.|. ....+..||+.+.....
T Consensus 15 C~~lC~yd~~~~qW~~~g~---------------~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~- 78 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGN---------------GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSS- 78 (281)
T ss_pred CCEEEEEECCCCEeecCCC---------------CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeee-
Confidence 3468899988766433322 2234799999987766666664 24568889988765422
Q ss_pred EcC-----CCCCeEEEEEeCCCCc-EEEEee-C--CCeEEEec
Q 015301 180 IPA-----HKSDVNTVCFADETGH-LIFSGS-D--DSLCKVWD 213 (409)
Q Consensus 180 ~~~-----~~~~v~~~~~~~~~~~-~l~~~~-~--dg~i~iwd 213 (409)
+.. -.++|+.+.+...+.. +.++|. . +..|..||
T Consensus 79 ~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 79 LGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred cCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEc
Confidence 222 2478888887544444 443433 2 33466777
No 497
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.69 E-value=10 Score=28.66 Aligned_cols=30 Identities=13% Similarity=0.135 Sum_probs=21.3
Q ss_pred EEEeeeecCCC------CEEEEEeCCCeEEEEEccC
Q 015301 315 CYFSPEYSTAQ------KYIYTGSSDNSVYIYDLVS 344 (409)
Q Consensus 315 ~~~~~~~s~~~------~~l~~~~~dg~v~i~d~~~ 344 (409)
.+..++|||.| -+|++-+.+|.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 34455666643 4788889999999998653
No 498
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.51 E-value=22 Score=31.26 Aligned_cols=106 Identities=14% Similarity=0.054 Sum_probs=56.4
Q ss_pred eEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCc--
Q 015301 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR-- 222 (409)
Q Consensus 145 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-- 222 (409)
...+..++++.+++++.....++-||-........-......++.+.+. +++.+++++ ..|.+..-+- .+.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~-~dg~l~l~g-~~G~l~~S~d-----~G~~~ 313 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWR-ADGGLWLLT-RGGGLYVSKG-----TGLTE 313 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEc-CCCCEEEEe-CCceEEEecC-----CCCcc
Confidence 4456677888877766543333334432211111122235568899998 777777665 5566544331 221
Q ss_pred ---eeeeeec--cccceeEEEEcCCCCeEEEEeCCCcEEEe
Q 015301 223 ---ANGVLMG--HLEGITFIDSRRDGRYFISNGKDQTTKLW 258 (409)
Q Consensus 223 ---~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 258 (409)
....... ....+..+.+.+++..+ .++..|.+...
T Consensus 314 ~~~~f~~~~~~~~~~~l~~v~~~~d~~~~-a~G~~G~v~~s 353 (398)
T PLN00033 314 EDFDFEEADIKSRGFGILDVGYRSKKEAW-AAGGSGILLRS 353 (398)
T ss_pred cccceeecccCCCCcceEEEEEcCCCcEE-EEECCCcEEEe
Confidence 1121111 12347888898777654 45566755554
No 499
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=86.45 E-value=7.1 Score=25.54 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=26.4
Q ss_pred CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe
Q 015301 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS 104 (409)
Q Consensus 61 d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 104 (409)
+|.+.-||..+++.......+. -.+.+++++|+.+|+++-
T Consensus 36 ~GRll~ydp~t~~~~vl~~~L~----fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDGLY----FPNGVALSPDESFVLVAE 75 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEEES----SEEEEEE-TTSSEEEEEE
T ss_pred CcCEEEEECCCCeEEEehhCCC----ccCeEEEcCCCCEEEEEe
Confidence 5788889998884322222222 478899999999888763
No 500
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=85.68 E-value=22 Score=34.70 Aligned_cols=74 Identities=9% Similarity=0.110 Sum_probs=51.2
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCeee--eeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc
Q 015301 45 TSQFSNDGSFFVAASQESNIKVYNVDKNWKI--QKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~ 118 (409)
|......+..+++|...|.+.+++.+..... ........++.++..+.|.|+.+.++.+-..|...+|......
T Consensus 153 c~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~~~ti~~~~~~~~p~~~~~av~~~~g~ls~wS~~g~~ 228 (1023)
T KOG2006|consen 153 CCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDDTLTVPDNNSSWRPDQNGFAVTWEKGFLAFWSNQGNI 228 (1023)
T ss_pred eeeccchhhhheecccccceeehhhhhhccceeeecccCccccccccccCcCCccceeeeeecccceEEecccccc
Confidence 4444556778899999999999987643211 1111222333367778999999999999888999999876543
Done!